Citrus Sinensis ID: 010274
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 514 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZV7 | 612 | Probable methyltransferas | yes | no | 0.982 | 0.825 | 0.769 | 0.0 | |
| Q93YV7 | 608 | Probable methyltransferas | no | no | 0.809 | 0.684 | 0.696 | 0.0 | |
| Q8H118 | 611 | Probable methyltransferas | no | no | 0.828 | 0.697 | 0.693 | 0.0 | |
| Q940J9 | 623 | Probable methyltransferas | no | no | 0.974 | 0.804 | 0.629 | 0.0 | |
| O22285 | 694 | Probable methyltransferas | no | no | 0.904 | 0.670 | 0.452 | 1e-116 | |
| Q9FG39 | 682 | Probable methyltransferas | no | no | 0.805 | 0.607 | 0.457 | 1e-114 | |
| Q9LZA4 | 600 | Probable methyltransferas | no | no | 0.824 | 0.706 | 0.466 | 1e-113 | |
| Q84TJ0 | 591 | Probable methyltransferas | no | no | 0.824 | 0.717 | 0.468 | 1e-112 | |
| Q94KE1 | 655 | Probable methyltransferas | no | no | 0.819 | 0.642 | 0.444 | 1e-111 | |
| Q9C884 | 639 | Probable methyltransferas | no | no | 0.799 | 0.643 | 0.454 | 1e-107 |
| >sp|Q8VZV7|PMT9_ARATH Probable methyltransferase PMT9 OS=Arabidopsis thaliana GN=At5g14430 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 800 bits (2066), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/513 (76%), Positives = 442/513 (86%), Gaps = 8/513 (1%)
Query: 1 MKQKSEQQIR-TSKQLTYVLLGLISVLGLVCLYYGSTSAPGLRRSDDESSGFDGSDPVLG 59
MK +++R T K TYVL+G I++LGL CLYYGS+ APG R+SD+ FDGS+ +
Sbjct: 1 MKHFRTERVRATPKLFTYVLVGFIALLGLTCLYYGSSFAPGSRKSDE----FDGSNNRVR 56
Query: 60 T-FGRNRDFDDLFEDQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHY 118
T G R+ D + EVPKS+PICD R+SELIPCLDRNL YQLKLK NLSLMEHY
Sbjct: 57 TGIGSLRNRDIVLAVSRF--EVPKSVPICDSRHSELIPCLDRNLHYQLKLKLNLSLMEHY 114
Query: 119 ERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEK 178
E HCPP ERR+NCLVPPP GYKIP+RWP SRDEVWKANIPHTHLA+EKSDQ+WMVVNG+K
Sbjct: 115 EHHCPPSERRFNCLVPPPVGYKIPLRWPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDK 174
Query: 179 INFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDI 238
INFPGGGTHFH+GADKYI++LA+MLKFP DKLNNGG+IRNVLDVGCGVASFGAYLLSHDI
Sbjct: 175 INFPGGGTHFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDI 234
Query: 239 IAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI 298
IAMSLAPNDVH+NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI
Sbjct: 235 IAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI 294
Query: 299 LLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKP 358
LLLELDRLLRPGGYFVYSSPEAYAHDPENR+I NAM+DL K MCWK+V+K+DQ+VIW KP
Sbjct: 295 LLLELDRLLRPGGYFVYSSPEAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKP 354
Query: 359 ISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTA 418
ISNSCYLKR PG PPLC S DDPD TWNV MKACISPYS +MH E+ +GLVPWP RLTA
Sbjct: 355 ISNSCYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVPWPRRLTA 414
Query: 419 PPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALK 478
PPPRLEE+GVT E+F ED W++RV++YWK +K + QKN+ RNVMDM+SNLGGFAAAL
Sbjct: 415 PPPRLEEIGVTPEQFREDTETWRLRVIEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALN 474
Query: 479 DKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDW 511
DKDVWVMNV PV+ S R+KIIYDRGLIG HDW
Sbjct: 475 DKDVWVMNVMPVQSSPRMKIIYDRGLIGATHDW 507
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q93YV7|PMT3_ARATH Probable methyltransferase PMT3 OS=Arabidopsis thaliana GN=At4g14360 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/432 (69%), Positives = 357/432 (82%)
Query: 80 VPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGY 139
P+S P+CD R+SELIPCLDRNLIYQ++LK +LSLMEHYERHCPPPERR+NCL+PPP GY
Sbjct: 72 TPRSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPNGY 131
Query: 140 KIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILAL 199
K+P++WP SRDEVWK NIPHTHLA EKSDQ+WMVV G+KINFPGGGTHFH GADKYI ++
Sbjct: 132 KVPIKWPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGDKINFPGGGTHFHYGADKYIASM 191
Query: 200 ARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER 259
A ML +P++ LNNGG +R V DVGCGVASFG YLLS DI+ MSLAPNDVH+NQIQFALER
Sbjct: 192 ANMLNYPNNVLNNGGRLRTVFDVGCGVASFGGYLLSSDILTMSLAPNDVHQNQIQFALER 251
Query: 260 GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319
GIP++LGVLGTKRLPYPSRSFEL+HCSRCRIDWLQRDGILLLELDR+LRPGGYF YSSPE
Sbjct: 252 GIPASLGVLGTKRLPYPSRSFELSHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPE 311
Query: 320 AYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSD 379
AYA D E+ RIW M L++ MCWKI +K++QTVIW KP++N CYL+R PG++PPLC SD
Sbjct: 312 AYAQDEEDLRIWREMSALVERMCWKIAAKRNQTVIWQKPLTNDCYLEREPGTQPPLCRSD 371
Query: 380 DDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGI 439
+DPD W V M+ACI+ YS H KG+GL PWPARLT+PPPRL + G +T F +D +
Sbjct: 372 NDPDAVWGVNMEACITSYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTGMFEKDTEL 431
Query: 440 WQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKII 499
W+ RV YW + + +T RN+MDM +++G FAAALK+KDVWVMNV P LK+I
Sbjct: 432 WRQRVDTYWDLLSPRIESDTVRNIMDMKASMGSFAAALKEKDVWVMNVVPEDGPNTLKLI 491
Query: 500 YDRGLIGTVHDW 511
YDRGL+G VH W
Sbjct: 492 YDRGLMGAVHSW 503
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8H118|PMT1_ARATH Probable methyltransferase PMT1 OS=Arabidopsis thaliana GN=At3g23300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/440 (69%), Positives = 356/440 (80%)
Query: 72 EDQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNC 131
ED N P+S P+CD R+SELIPCLDRNLIYQ++LK +LSLMEHYERHCPPPERR+NC
Sbjct: 67 EDVVGNGFTPRSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNC 126
Query: 132 LVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDG 191
L+PPP GYKIP++WP SRDEVWK NIPHTHLA EKSDQ+WMVV GEKINFPGGGTHFH G
Sbjct: 127 LIPPPPGYKIPIKWPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGEKINFPGGGTHFHYG 186
Query: 192 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHEN 251
ADKYI ++A ML FP++ LNNGG +R LDVGCGVASFG YLL+ +I+ MSLAPNDVH+N
Sbjct: 187 ADKYIASMANMLNFPNNVLNNGGRLRTFLDVGCGVASFGGYLLASEIMTMSLAPNDVHQN 246
Query: 252 QIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGG 311
QIQFALERGIP+ LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDR+LRPGG
Sbjct: 247 QIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGG 306
Query: 312 YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGS 371
YF YSSPEAYA D E+ RIW M L+ MCW I +K++QTVIW KP++N CYL R PG+
Sbjct: 307 YFAYSSPEAYAQDEEDLRIWREMSALVGRMCWTIAAKRNQTVIWQKPLTNDCYLGREPGT 366
Query: 372 RPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTE 431
+PPLC+SD DPD + V M+ACI+ YS H KG+GL PWPARLT+PPPRL + G +T+
Sbjct: 367 QPPLCNSDSDPDAVYGVNMEACITQYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTD 426
Query: 432 EFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVR 491
F +D W+ RV YW + Q +T RN+MDM +++G FAAALK+KDVWVMNV P
Sbjct: 427 IFEKDTETWRQRVDTYWDLLSPKIQSDTVRNIMDMKASMGSFAAALKEKDVWVMNVVPED 486
Query: 492 MSARLKIIYDRGLIGTVHDW 511
LK+IYDRGL+G VH W
Sbjct: 487 GPNTLKLIYDRGLMGAVHSW 506
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q940J9|PMT8_ARATH Probable methyltransferase PMT8 OS=Arabidopsis thaliana GN=At1g04430 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/508 (62%), Positives = 384/508 (75%), Gaps = 7/508 (1%)
Query: 10 RTSKQLTYVLLGLISVLGL-VC---LYYGSTSAPGLRRSDDESSGFDGSDPVLGTFGRNR 65
R+ L L+ + V+ L VC +YYGS+S S GS + G N
Sbjct: 5 RSDGGLKKRLIASVCVVALFVCFLFMYYGSSSQGASALEYGRSLRKLGSSYLSGD-DDNG 63
Query: 66 DF--DDLFEDQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCP 123
D DD + E + V KS P+CD R+SE+IPCLDRN IYQ++LK +LSLMEHYERHCP
Sbjct: 64 DTKQDDSVANAEDSLVVAKSFPVCDDRHSEIIPCLDRNFIYQMRLKLDLSLMEHYERHCP 123
Query: 124 PPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPG 183
PPERR+NCL+PPP GYK+P++WP SRDEVWKANIPHTHLA+EKSDQ+WMV GEKI+FPG
Sbjct: 124 PPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAKEKSDQNWMVEKGEKISFPG 183
Query: 184 GGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSL 243
GGTHFH GADKYI ++A ML F +D LN+ G +R VLDVGCGVASFGAYLL+ DI+ MSL
Sbjct: 184 GGTHFHYGADKYIASIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIMTMSL 243
Query: 244 APNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLEL 303
APNDVH+NQIQFALERGIP+ LGVLGTKRLPYPSRSFE AHCSRCRIDWLQRDG+LLLEL
Sbjct: 244 APNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGLLLLEL 303
Query: 304 DRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSC 363
DR+LRPGGYF YSSPEAYA D EN +IW M L++ MCW+I K++QTV+W KP+SN C
Sbjct: 304 DRVLRPGGYFAYSSPEAYAQDEENLKIWKEMSALVERMCWRIAVKRNQTVVWQKPLSNDC 363
Query: 364 YLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRL 423
YL+R PG++PPLC SD DPD V M+ACI+PYS H KG+GL PWPARLT+ PPRL
Sbjct: 364 YLEREPGTQPPLCRSDADPDAVAGVSMEACITPYSKHDHKTKGSGLAPWPARLTSSPPRL 423
Query: 424 EEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVW 483
+ G +T+ F +D +W+ +V YW M + + NT RN+MDM +++G FAAALKDKDVW
Sbjct: 424 ADFGYSTDMFEKDTELWKQQVDSYWNLMSSKVKSNTVRNIMDMKAHMGSFAAALKDKDVW 483
Query: 484 VMNVAPVRMSARLKIIYDRGLIGTVHDW 511
VMNV LK+IYDRGLIGT H+W
Sbjct: 484 VMNVVSPDGPNTLKLIYDRGLIGTNHNW 511
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O22285|PMTB_ARATH Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 420 bits (1079), Expect = e-116, Method: Compositional matrix adjust.
Identities = 221/488 (45%), Positives = 294/488 (60%), Gaps = 23/488 (4%)
Query: 33 YGSTSAPGLRRSDDESSGFDGSDPVLGTFGRNRDFDDLFEDQELNPEVP-KSIPICDMRY 91
+G A G+ SDD G SD V +G + + D + V K +C
Sbjct: 127 FGIVDANGVM-SDDFEVGEVESDTV-EDWGNQTEIVEAKSDGDSKARVRIKKFGMCPESM 184
Query: 92 SELIPCLDR-NLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRD 150
E IPCLD ++I +LK + E +ERHCP + NCLVPPPKGY+ P+ WP SRD
Sbjct: 185 REYIPCLDNTDVIKKLK---STERGERFERHCPEKGKGLNCLVPPPKGYRQPIPWPKSRD 241
Query: 151 EVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKL 210
EVW +N+PHT L E+K Q+W+ + K FPGGGT F GAD+Y+ +++M+ +
Sbjct: 242 EVWFSNVPHTRLVEDKGGQNWISRDKNKFKFPGGGTQFIHGADQYLDQMSKMVS----DI 297
Query: 211 NNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT 270
G +IR +DVGCGVASFGAYLLS D++ MS+AP DVHENQIQFALERG+P+ T
Sbjct: 298 TFGKHIRVAMDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQIQFALERGVPAMAAAFAT 357
Query: 271 KRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRI 330
+RL YPS++F+L HCSRCRI+W + DGILLLE++R+LR GGYF +++ Y H+P
Sbjct: 358 RRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYFAWAAQPVYKHEPALEEQ 417
Query: 331 WNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLM 390
W M +L S+CWK+V K+ IW KP +N CYL R G++PPLC DDPD W +
Sbjct: 418 WTEMLNLTISLCWKLVKKEGYVAIWQKPFNNDCYLSREAGTKPPLCDESDDPDNVWYTNL 477
Query: 391 KACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTT-----EEFHEDIGIWQVRVV 445
K CIS K + G + WPARL PP RL+ + + E F + W +
Sbjct: 478 KPCISRIPEKGY---GGNVPLWPARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEIIG 534
Query: 446 DYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMSARLKIIYDRG 503
Y + +K +K RNV+DM + GGFAAAL D D WV++V PV L +IYDRG
Sbjct: 535 GYVRALKW--KKMKLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRG 592
Query: 504 LIGTVHDW 511
L+G +HDW
Sbjct: 593 LLGVMHDW 600
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT12 OS=Arabidopsis thaliana GN=At5g06050 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 413 bits (1061), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/442 (45%), Positives = 277/442 (62%), Gaps = 28/442 (6%)
Query: 82 KSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKI 141
+ IC +E IPCLD + +K + + E +ER+CP NC VP P+GY+
Sbjct: 147 RKFEICSENMTEYIPCLDN--VEAIKRLNSTARGERFERNCPNDGMGLNCTVPIPQGYRS 204
Query: 142 PVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALAR 201
P+ WP SRDEVW N+PHT L E+K Q+W+ +K FPGGGT F GAD+Y+ +++
Sbjct: 205 PIPWPRSRDEVWFNNVPHTKLVEDKGGQNWIYKENDKFKFPGGGTQFIHGADQYLDQISQ 264
Query: 202 MLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI 261
M+ ++ G + R VLD+GCGVASFGAYL+S +++ MS+AP DVHENQIQFALERG+
Sbjct: 265 MIP----DISFGNHTRVVLDIGCGVASFGAYLMSRNVLTMSIAPKDVHENQIQFALERGV 320
Query: 262 PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY 321
P+ + T+RL YPS++F+L HCSRCRI+W + DGILLLE++R+LR GGYFV+++ Y
Sbjct: 321 PAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVY 380
Query: 322 AHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDD 381
H+ W M +L +CW +V K+ IW KP++N+CYL R G PPLC+S+DD
Sbjct: 381 KHEKALEEQWEEMLNLTTRLCWVLVKKEGYIAIWQKPVNNTCYLSRGAGVSPPLCNSEDD 440
Query: 382 PDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTT-----EEFHED 436
PD W V +KACI+ + G L PWPARL PP RL+ + + + E F +
Sbjct: 441 PDNVWYVDLKACITRIEENGY---GANLAPWPARLLTPPDRLQTIQIDSYIARKELFVAE 497
Query: 437 IGIWQVRVVDY-----WKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD--KDVWVMNVAP 489
W+ + +Y WKQ+ RNV+DM + GGFAAAL + D WV+NV P
Sbjct: 498 SKYWKEIISNYVNALHWKQIG-------LRNVLDMRAGFGGFAAALAELKVDCWVLNVIP 550
Query: 490 VRMSARLKIIYDRGLIGTVHDW 511
V L +IYDRGL+G +HDW
Sbjct: 551 VSGPNTLPVIYDRGLLGVMHDW 572
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LZA4|PMT7_ARATH Probable methyltransferase PMT7 OS=Arabidopsis thaliana GN=At5g04060 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/433 (46%), Positives = 271/433 (62%), Gaps = 9/433 (2%)
Query: 80 VPKS-IPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKG 138
+P+S + +C ++++E IPC + + QL NLS E ERHCPP E+R CLVPPPK
Sbjct: 78 IPESGVNVCPLKFNEYIPCHNVTYVQQLLPSLNLSRREELERHCPPLEQRLFCLVPPPKD 137
Query: 139 YKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILA 198
YKIP+RWP SRD VW++N+ HTHLAE K Q+W+ G+ FPGGGTHF GA +YI
Sbjct: 138 YKIPIRWPTSRDYVWRSNVNHTHLAEVKGGQNWVHEQGQLWWFPGGGTHFKHGAPEYIQR 197
Query: 199 LARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE 258
L M + L + G + VLDVGCGVASF AYLL I MS AP D HENQIQFALE
Sbjct: 198 LGNMTTNETGDLLSAG-VEQVLDVGCGVASFAAYLLPLGIKTMSFAPKDGHENQIQFALE 256
Query: 259 RGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318
RGI + + + TK++PYP+ SF++ HCSRCR+DW + DG+L+ E++RLLRP GYFVYS+P
Sbjct: 257 RGIRAMISAIATKQMPYPAASFDMVHCSRCRVDWHENDGVLMKEVNRLLRPNGYFVYSAP 316
Query: 319 EAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSS 378
AY D + IW+ + +L +MCWK++S+K QT IW K +C K +C
Sbjct: 317 PAYRKDKDFPVIWDKLVNLTSAMCWKLISRKVQTAIWVKEDDEACLRKNAELELITICGV 376
Query: 379 DDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIG 438
+D +W V ++ C+ ++ +K + L RL++ P L E G++ +EF D
Sbjct: 377 EDVSKASWKVPLRDCVD--ISENRQQKPSSLTD---RLSSYPTSLREKGISEDEFTLDTN 431
Query: 439 IWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI 498
W+ +V YW+ M K RNVMD N+ +GGFAAA+ +WVMNV P M+ L
Sbjct: 432 FWREQVNQYWELMN--VNKTEVRNVMDTNAFIGGFAAAMNSYPLWVMNVVPATMNDTLSG 489
Query: 499 IYDRGLIGTVHDW 511
IY RGL G HDW
Sbjct: 490 IYQRGLTGAYHDW 502
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q84TJ0|PMT6_ARATH Probable methyltransferase PMT6 OS=Arabidopsis thaliana GN=At3g10200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/433 (46%), Positives = 271/433 (62%), Gaps = 9/433 (2%)
Query: 80 VPKS-IPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKG 138
+P+S + +C + ++E IPC + ++QL NLS E ERHCPP E R CLVPPP
Sbjct: 67 IPESGMNVCPLEFNEYIPCHNVTYVHQLLPSLNLSRREDLERHCPPLEHRLFCLVPPPND 126
Query: 139 YKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILA 198
YKIP+RWP SRD VW++N+ HTHLA+ K Q+W+ G+ FPGGGTHF GA +YI
Sbjct: 127 YKIPIRWPTSRDYVWRSNVNHTHLAQVKGGQNWVHEQGQFWWFPGGGTHFKHGAAEYIQR 186
Query: 199 LARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE 258
L M+ + L + G ++ VLDVGCGVASF AYLL I +S AP D HENQIQFALE
Sbjct: 187 LGNMMTNETGDLRSAGVVQ-VLDVGCGVASFAAYLLPLGIQTISFAPKDGHENQIQFALE 245
Query: 259 RGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318
RGI + + + TK+LPYP+ SFE+ HCSRCR+DW DGILL E+ RLLRP G+FVYSSP
Sbjct: 246 RGIGAMISAVATKQLPYPAASFEMVHCSRCRVDWHTNDGILLKEVHRLLRPNGFFVYSSP 305
Query: 319 EAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSS 378
AY D E IW+ + +L +MCWK++S+K QT IW K C ++ LC
Sbjct: 306 PAYRKDKEYPMIWDKLVNLTSAMCWKLISRKVQTAIWIKEEKEVCLKQKAELKLISLCDV 365
Query: 379 DDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIG 438
+D +W V +K C+ + E+ + L RL+A P L ++G++ +E+ D
Sbjct: 366 EDVLKPSWKVPLKDCVQ--ISGQTEERPSSLA---ERLSAYPATLRKIGISEDEYTSDTV 420
Query: 439 IWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI 498
W+ +V YW+ M + RNVMDMN+ +GGFAAA+ VWVMN+ P M+ L
Sbjct: 421 FWREQVNHYWRLMNV--NETEVRNVMDMNAFIGGFAAAMNSYPVWVMNIVPATMNDTLSG 478
Query: 499 IYDRGLIGTVHDW 511
I++RGL G HDW
Sbjct: 479 IFERGLNGAFHDW 491
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94KE1|PMTA_ARATH Probable methyltransferase PMT10 OS=Arabidopsis thaliana GN=At1g77260 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 402 bits (1033), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/454 (44%), Positives = 279/454 (61%), Gaps = 33/454 (7%)
Query: 73 DQELNPEVP---KSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRY 129
+++ +PEV + + +CD + IPCLD ++K N E+YERHCP ++
Sbjct: 129 EEKESPEVGFQIEKLKLCDKTKIDYIPCLDNE--EEIKRLNNTDRGENYERHCP--KQSL 184
Query: 130 NCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFH 189
+CL+PPP GYK P++WP SRD++W N+PHT L E+K Q+W+ +K FPGGGT F
Sbjct: 185 DCLIPPPDGYKKPIQWPQSRDKIWFNNVPHTRLVEDKGGQNWIRREKDKFVFPGGGTQFI 244
Query: 190 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVH 249
GAD+Y+ +++M+ + G R LD+GCGVASFGA+L+ + +S+AP DVH
Sbjct: 245 HGADQYLDQISQMIP----DITFGSRTRVALDIGCGVASFGAFLMQRNTTTLSVAPKDVH 300
Query: 250 ENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRP 309
ENQIQFALERG+P+ + V T+RL YPS+SFE+ HCSRCRI+W + DGILLLE++R+LR
Sbjct: 301 ENQIQFALERGVPAMVAVFATRRLLYPSQSFEMIHCSRCRINWTRDDGILLLEVNRMLRA 360
Query: 310 GGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVP 369
GGYFV+++ Y H+ + W M DL +CW+++ K+ +W KP++NSCY+ R
Sbjct: 361 GGYFVWAAQPVYKHEDNLQEQWKEMLDLTNRICWELIKKEGYIAVWRKPLNNSCYVSREA 420
Query: 370 GSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVT 429
G++PPLC DDDPD W V MK CI+ + G + WPARL PP RL+ + +
Sbjct: 421 GTKPPLCRPDDDPDDVWYVDMKPCITRLPDNGY---GANVSTWPARLHDPPERLQSIQMD 477
Query: 430 T-----EEFHEDIGIWQVRVVDY-----WKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD 479
E + W V Y WK+ K RNV+DM + GGFAAAL D
Sbjct: 478 AYISRKEIMKAESRFWLEVVESYVRVFRWKEFK-------LRNVLDMRAGFGGFAAALND 530
Query: 480 --KDVWVMNVAPVRMSARLKIIYDRGLIGTVHDW 511
D WVMN+ PV L +IYDRGL G +HDW
Sbjct: 531 LGLDCWVMNIVPVSGFNTLPVIYDRGLQGAMHDW 564
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C884|PMTI_ARATH Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/444 (45%), Positives = 277/444 (62%), Gaps = 33/444 (7%)
Query: 87 CDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWP 146
CDM SE PC DR + + + ++M++ ERHCP + CL+PPP YKIP +WP
Sbjct: 113 CDMSLSEYTPCEDR----ERGRRFDRNMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWP 168
Query: 147 ASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFP 206
SRD W NIPH L+ EK+ Q+W+ V GE+ FPGGGT F GAD YI +AR++
Sbjct: 169 QSRDYAWYDNIPHKELSIEKAIQNWIQVEGERFRFPGGGTMFPRGADAYIDDIARLIPL- 227
Query: 207 SDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLG 266
G IR +D GCGVASFGAYLL DI+AMS AP D HE Q+QFALERG+P+ +G
Sbjct: 228 -----TDGAIRTAIDTGCGVASFGAYLLKRDIVAMSFAPRDTHEAQVQFALERGVPAIIG 282
Query: 267 VLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP-------- 318
++G++RLPYP+R+F+LAHCSRC I W Q DG+ L E+DR+LRPGGY++ S P
Sbjct: 283 IMGSRRLPYPARAFDLAHCSRCLIPWFQNDGLYLTEVDRVLRPGGYWILSGPPINWKKYW 342
Query: 319 EAYAHDPEN-RRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISN-SC-YLKRVPGSRPPL 375
+ + E+ ++ +++ D +S+CWK V++K IW KPI++ C LKRV + PPL
Sbjct: 343 KGWERSQEDLKQEQDSIEDAARSLCWKKVTEKGDLSIWQKPINHVECNKLKRVHKT-PPL 401
Query: 376 CSSDDDPDVTWNVLMKACISPYSAKMHHEK--GTGLVPWPARLTAPPPRLEEVG-----V 428
CS D PD W +++C++P ++ G L WP R A PPR+ +G +
Sbjct: 402 CSKSDLPDFAWYKDLESCVTPLPEANSSDEFAGGALEDWPNRAFAVPPRI--IGGTIPDI 459
Query: 429 TTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVA 488
E+F ED +W+ R + Y+KQ+ + FRN+MDMN+ LGGFAAA+ WVMNV
Sbjct: 460 NAEKFREDNEVWKER-ISYYKQIMPELSRGRFRNIMDMNAYLGGFAAAMMKYPSWVMNVV 518
Query: 489 PVRMSAR-LKIIYDRGLIGTVHDW 511
PV + L +I++RG IGT DW
Sbjct: 519 PVDAEKQTLGVIFERGFIGTYQDW 542
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 514 | ||||||
| 359488775 | 612 | PREDICTED: probable methyltransferase PM | 0.990 | 0.831 | 0.812 | 0.0 | |
| 147767455 | 651 | hypothetical protein VITISV_010901 [Viti | 0.996 | 0.786 | 0.793 | 0.0 | |
| 255560962 | 603 | S-adenosylmethionine-dependent methyltra | 0.966 | 0.824 | 0.808 | 0.0 | |
| 22326809 | 612 | putative methyltransferase PMT9 [Arabido | 0.982 | 0.825 | 0.769 | 0.0 | |
| 449450056 | 610 | PREDICTED: probable methyltransferase PM | 0.928 | 0.781 | 0.803 | 0.0 | |
| 449483797 | 610 | PREDICTED: probable methyltransferase PM | 0.928 | 0.781 | 0.803 | 0.0 | |
| 42573369 | 612 | putative methyltransferase PMT9 [Arabido | 0.982 | 0.825 | 0.764 | 0.0 | |
| 157849758 | 608 | dehydration-responsive protein-related [ | 0.972 | 0.822 | 0.748 | 0.0 | |
| 7573468 | 632 | putative protein [Arabidopsis thaliana] | 0.982 | 0.799 | 0.741 | 0.0 | |
| 224060159 | 528 | predicted protein [Populus trichocarpa] | 0.815 | 0.793 | 0.854 | 0.0 |
| >gi|359488775|ref|XP_002271722.2| PREDICTED: probable methyltransferase PMT9-like [Vitis vinifera] gi|296087585|emb|CBI34841.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/512 (81%), Positives = 456/512 (89%), Gaps = 3/512 (0%)
Query: 1 MKQKSEQQIRTSKQLTYVLLGLISVLGLVCLYYGSTSAPGLRRSDDESSGFDGSDPVLGT 60
MK KSE +K + YVL+GL+ LGL+CLY GS APG RR+DD+++ DG DPVLG
Sbjct: 1 MKHKSEPA-HVTKLVKYVLVGLVVFLGLICLYCGSLLAPGSRRADDDATA-DGVDPVLGG 58
Query: 61 FGR-NRDFDDLFEDQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYE 119
+ R + DFDDLFEDQE NPEVPKSIP+CDMR+SELIPCLDRNLIYQLKLKPNL+LMEHYE
Sbjct: 59 YVREDGDFDDLFEDQEHNPEVPKSIPVCDMRFSELIPCLDRNLIYQLKLKPNLALMEHYE 118
Query: 120 RHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKI 179
RHCPPPERRYNCL+PPP GYKIP+RWPASRDEVWK NIPHTHLA EKSDQ+WMVVNG+KI
Sbjct: 119 RHCPPPERRYNCLIPPPIGYKIPIRWPASRDEVWKVNIPHTHLASEKSDQNWMVVNGDKI 178
Query: 180 NFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDII 239
NFPGGGTHFH+GADKYI+ALARMLKFP DKLNNGGNIRNVLDVGCGVASFGAYLL H+I+
Sbjct: 179 NFPGGGTHFHNGADKYIIALARMLKFPDDKLNNGGNIRNVLDVGCGVASFGAYLLPHNIM 238
Query: 240 AMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIL 299
AMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFE+AHCSRCRIDWLQRDGIL
Sbjct: 239 AMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFEMAHCSRCRIDWLQRDGIL 298
Query: 300 LLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 359
LLELDRLLRPGGYFVYSSPEAYA D NRRIWNA DLLK MCW++VSKKDQTVIWAKP
Sbjct: 299 LLELDRLLRPGGYFVYSSPEAYARDAVNRRIWNATSDLLKRMCWRVVSKKDQTVIWAKPT 358
Query: 360 SNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAP 419
SNSC+ KR PG+ PPLCSSDDDPD +WNV MKACI+PYS K+H +KG+GLVPWP RLT
Sbjct: 359 SNSCFAKRDPGTLPPLCSSDDDPDASWNVFMKACITPYSGKVHRQKGSGLVPWPQRLTTA 418
Query: 420 PPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD 479
P RLEE G++ EEF ED IW RV +YWKQMK+V +K++FRNVMDMNSNLGGFAAALKD
Sbjct: 419 PSRLEEFGISAEEFQEDTSIWYFRVFEYWKQMKSVVEKDSFRNVMDMNSNLGGFAAALKD 478
Query: 480 KDVWVMNVAPVRMSARLKIIYDRGLIGTVHDW 511
KDVWVMNVAPV SA+LKIIYDRGLIGTVHDW
Sbjct: 479 KDVWVMNVAPVNASAKLKIIYDRGLIGTVHDW 510
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147767455|emb|CAN71260.1| hypothetical protein VITISV_010901 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/528 (79%), Positives = 458/528 (86%), Gaps = 16/528 (3%)
Query: 1 MKQKSEQQIRTSKQLTYVLLGLISVLGLVCLYYGSTSAPGLRRSDDESSGFDGSDPVLGT 60
MK KSE +K + YVL+GL+ LGL+CLY GS APG RR+DD+++ DG DPVLG
Sbjct: 53 MKHKSEPA-HVTKLVKYVLVGLVVFLGLICLYCGSLLAPGSRRADDDATA-DGVDPVLGG 110
Query: 61 F-GRNRDFDDLFEDQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYE 119
+ + DFDDLFEDQE NPEVPKSIP+CDMR+SELIPCLDRNLIYQLKLKPNL+LMEHYE
Sbjct: 111 YVXEDGDFDDLFEDQEHNPEVPKSIPVCDMRFSELIPCLDRNLIYQLKLKPNLALMEHYE 170
Query: 120 RHCPPPERRYNCLVPPPKGYK-------------IPVRWPASRDEVWKANIPHTHLAEEK 166
RHCPPPERRYNCL+PPP GYK IP+RWPASRDEVWK NIPHTHLA EK
Sbjct: 171 RHCPPPERRYNCLIPPPIGYKLVFILIRLLLGYQIPIRWPASRDEVWKVNIPHTHLASEK 230
Query: 167 SDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGV 226
SDQ+WMVVNG+KINFPGGGTHFH+GADKYI+ALARMLKFP DKLNNGGNIRNVLDVGCGV
Sbjct: 231 SDQNWMVVNGDKINFPGGGTHFHNGADKYIIALARMLKFPDDKLNNGGNIRNVLDVGCGV 290
Query: 227 ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCS 286
ASFGAYLL HDI+AMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFE+AHCS
Sbjct: 291 ASFGAYLLPHDIMAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFEMAHCS 350
Query: 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346
RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA D NRRIWNA DLLK MCW++V
Sbjct: 351 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYARDAVNRRIWNATSDLLKRMCWRVV 410
Query: 347 SKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKG 406
SKKDQTVIWAKP SNSC+ KR PG+ PPLCSSDDDPD +WNV MKACI+PYS K+H +KG
Sbjct: 411 SKKDQTVIWAKPTSNSCFAKRDPGTLPPLCSSDDDPDASWNVFMKACITPYSGKVHRQKG 470
Query: 407 TGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDM 466
+GLVPWP RLT P RLEE G++ EEF ED IW RV +YWKQMK+V +K++FRNVMDM
Sbjct: 471 SGLVPWPQRLTTAPSRLEEFGISAEEFQEDTSIWYFRVFEYWKQMKSVVEKDSFRNVMDM 530
Query: 467 NSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWYAF 514
NSNLGGFAAALKDKDVWVMNVAPV SA+LKIIYDRGLIGTVHDWYAF
Sbjct: 531 NSNLGGFAAALKDKDVWVMNVAPVNASAKLKIIYDRGLIGTVHDWYAF 578
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255560962|ref|XP_002521494.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223539393|gb|EEF40984.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/506 (80%), Positives = 449/506 (88%), Gaps = 9/506 (1%)
Query: 7 QQIRTSKQLTYVLLGLISVLGLVCLYYGSTSAPGLRRSDDESSGFDGSDPVLGTFGRNRD 66
+QIRTSK +TY+L+GLI+ LGL+CLYYGST AP L RSD + +DPV + R D
Sbjct: 2 KQIRTSKLITYILIGLITFLGLICLYYGSTIAPALYRSDRFG---EATDPVSTGYARTPD 58
Query: 67 FDD-LFEDQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPP 125
DD LF QEL VP+SIPICDM+YSELIPCLDRNLIYQLKLKPNL+LMEHYERHCPPP
Sbjct: 59 LDDDLF--QEL---VPQSIPICDMKYSELIPCLDRNLIYQLKLKPNLTLMEHYERHCPPP 113
Query: 126 ERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGG 185
ERRYNCL+PPP GYKIP+RWP SRDE+WK NIPHTHLA+EKSDQ+WMVVNG+KINFPGGG
Sbjct: 114 ERRYNCLIPPPIGYKIPIRWPESRDEIWKVNIPHTHLAQEKSDQNWMVVNGDKINFPGGG 173
Query: 186 THFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAP 245
THFH GADKYI +LARMLKFP+DKL+NGG IRNVLDVGCGVASFGAYLL+HDII MSLAP
Sbjct: 174 THFHYGADKYIASLARMLKFPNDKLHNGGYIRNVLDVGCGVASFGAYLLAHDIITMSLAP 233
Query: 246 NDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDR 305
NDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDR
Sbjct: 234 NDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDR 293
Query: 306 LLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYL 365
LLRPGGYF YSSPEAYAHDPENRRIW+AM+DLL MCW++V +KDQTVIWAKP SNSC+L
Sbjct: 294 LLRPGGYFAYSSPEAYAHDPENRRIWSAMHDLLGRMCWRVVVRKDQTVIWAKPTSNSCFL 353
Query: 366 KRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEE 425
KR PG++PPLCSSDDDPD TWNV MKACISPYS+KMH E+G+GLVPWP RL A PPRLEE
Sbjct: 354 KREPGTQPPLCSSDDDPDATWNVHMKACISPYSSKMHKERGSGLVPWPRRLIAAPPRLEE 413
Query: 426 VGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVM 485
+GV+ EEF ED IWQ RV +YWKQMK+V +++ FRNVMDMNSNLGGF A LKD DVWVM
Sbjct: 414 IGVSPEEFQEDTRIWQFRVSEYWKQMKSVVRRSYFRNVMDMNSNLGGFGAVLKDTDVWVM 473
Query: 486 NVAPVRMSARLKIIYDRGLIGTVHDW 511
NVAPV SARLKIIYDRGLIGTVHDW
Sbjct: 474 NVAPVNQSARLKIIYDRGLIGTVHDW 499
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22326809|ref|NP_196947.2| putative methyltransferase PMT9 [Arabidopsis thaliana] gi|75248535|sp|Q8VZV7.1|PMT9_ARATH RecName: Full=Probable methyltransferase PMT9 gi|17380666|gb|AAL36163.1| unknown protein [Arabidopsis thaliana] gi|21280807|gb|AAM45045.1| unknown protein [Arabidopsis thaliana] gi|332004649|gb|AED92032.1| putative methyltransferase PMT9 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 800 bits (2066), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/513 (76%), Positives = 442/513 (86%), Gaps = 8/513 (1%)
Query: 1 MKQKSEQQIR-TSKQLTYVLLGLISVLGLVCLYYGSTSAPGLRRSDDESSGFDGSDPVLG 59
MK +++R T K TYVL+G I++LGL CLYYGS+ APG R+SD+ FDGS+ +
Sbjct: 1 MKHFRTERVRATPKLFTYVLVGFIALLGLTCLYYGSSFAPGSRKSDE----FDGSNNRVR 56
Query: 60 T-FGRNRDFDDLFEDQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHY 118
T G R+ D + EVPKS+PICD R+SELIPCLDRNL YQLKLK NLSLMEHY
Sbjct: 57 TGIGSLRNRDIVLAVSRF--EVPKSVPICDSRHSELIPCLDRNLHYQLKLKLNLSLMEHY 114
Query: 119 ERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEK 178
E HCPP ERR+NCLVPPP GYKIP+RWP SRDEVWKANIPHTHLA+EKSDQ+WMVVNG+K
Sbjct: 115 EHHCPPSERRFNCLVPPPVGYKIPLRWPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDK 174
Query: 179 INFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDI 238
INFPGGGTHFH+GADKYI++LA+MLKFP DKLNNGG+IRNVLDVGCGVASFGAYLLSHDI
Sbjct: 175 INFPGGGTHFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDI 234
Query: 239 IAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI 298
IAMSLAPNDVH+NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI
Sbjct: 235 IAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI 294
Query: 299 LLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKP 358
LLLELDRLLRPGGYFVYSSPEAYAHDPENR+I NAM+DL K MCWK+V+K+DQ+VIW KP
Sbjct: 295 LLLELDRLLRPGGYFVYSSPEAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKP 354
Query: 359 ISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTA 418
ISNSCYLKR PG PPLC S DDPD TWNV MKACISPYS +MH E+ +GLVPWP RLTA
Sbjct: 355 ISNSCYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVPWPRRLTA 414
Query: 419 PPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALK 478
PPPRLEE+GVT E+F ED W++RV++YWK +K + QKN+ RNVMDM+SNLGGFAAAL
Sbjct: 415 PPPRLEEIGVTPEQFREDTETWRLRVIEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALN 474
Query: 479 DKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDW 511
DKDVWVMNV PV+ S R+KIIYDRGLIG HDW
Sbjct: 475 DKDVWVMNVMPVQSSPRMKIIYDRGLIGATHDW 507
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450056|ref|XP_004142780.1| PREDICTED: probable methyltransferase PMT9-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/483 (80%), Positives = 430/483 (89%), Gaps = 6/483 (1%)
Query: 30 CLYYGSTSAPGLRRSDDESSGFDGSDPVLGTFGRNRDFDDLFE-DQELNPEVPKSIPICD 88
CLYYGS+ AP RRSD E S DP+ N DFDDL E ++L+ +VP+SIPICD
Sbjct: 29 CLYYGSSFAPSSRRSDGEDS-----DPLFAGDLSNHDFDDLHEPHRDLSLQVPQSIPICD 83
Query: 89 MRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPAS 148
R+SELIPCLDRNLIYQLKLK NLSLMEHYERHCPPPERRYNCL+PPP GYKIP+RWP S
Sbjct: 84 ERFSELIPCLDRNLIYQLKLKLNLSLMEHYERHCPPPERRYNCLIPPPTGYKIPIRWPNS 143
Query: 149 RDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSD 208
RDEVWKANIPHTHLA+EKSDQ+WMVVNG+KINFPGGGTHFH GADKYI+ALARMLKFP D
Sbjct: 144 RDEVWKANIPHTHLAQEKSDQNWMVVNGDKINFPGGGTHFHYGADKYIIALARMLKFPGD 203
Query: 209 KLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVL 268
KLNNGGN+RNVLDVGCGVASFGAYLLSHDI+AMSLAPNDVHENQIQFALERGIPSTLGVL
Sbjct: 204 KLNNGGNLRNVLDVGCGVASFGAYLLSHDIVAMSLAPNDVHENQIQFALERGIPSTLGVL 263
Query: 269 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR 328
GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF YSSPEAYAHD ENR
Sbjct: 264 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAHDQENR 323
Query: 329 RIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNV 388
RI AM+D+LK MCWK+V+KKDQTVIW KP+SNSCYLKR PG+ PPLC+ DDD D+TWNV
Sbjct: 324 RIGMAMHDILKRMCWKVVAKKDQTVIWGKPMSNSCYLKRDPGTLPPLCNLDDDSDLTWNV 383
Query: 389 LMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYW 448
M+ACIS YSAKMH +KG+GLVPWP RLT+ PPRLEEVGV+ EEF ED +WQ+RV +YW
Sbjct: 384 SMQACISRYSAKMHKQKGSGLVPWPQRLTSAPPRLEEVGVSAEEFKEDSTVWQLRVAEYW 443
Query: 449 KQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTV 508
K+M+ V Q+++ RNVMDMNSNLGGFAAAL +KDVWVMNVAP+ SA+LKI+YDRGL+GTV
Sbjct: 444 KEMRLVIQRDSIRNVMDMNSNLGGFAAALINKDVWVMNVAPINSSAKLKIVYDRGLLGTV 503
Query: 509 HDW 511
HDW
Sbjct: 504 HDW 506
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483797|ref|XP_004156694.1| PREDICTED: probable methyltransferase PMT9-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/483 (80%), Positives = 430/483 (89%), Gaps = 6/483 (1%)
Query: 30 CLYYGSTSAPGLRRSDDESSGFDGSDPVLGTFGRNRDFDDLFE-DQELNPEVPKSIPICD 88
CLYYGS+ AP RRSD E S DP+ N DFDDL E ++L+ +VP+SIPICD
Sbjct: 29 CLYYGSSFAPSSRRSDGEDS-----DPLFAGDLSNHDFDDLHEPRRDLSLQVPQSIPICD 83
Query: 89 MRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPAS 148
R+SELIPCLDRNLIYQLKLK NLSLMEHYERHCPPPERRYNCL+PPP GYKIP+RWP S
Sbjct: 84 ERFSELIPCLDRNLIYQLKLKLNLSLMEHYERHCPPPERRYNCLIPPPTGYKIPIRWPNS 143
Query: 149 RDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSD 208
RDEVWKANIPHTHLA+EKSDQ+WMVVNG+KINFPGGGTHFH GADKYI+ALARMLKFP D
Sbjct: 144 RDEVWKANIPHTHLAQEKSDQNWMVVNGDKINFPGGGTHFHYGADKYIIALARMLKFPGD 203
Query: 209 KLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVL 268
KLNNGGN+RNVLDVGCGVASFGAYLLSHDI+AMSLAPNDVHENQIQFALERGIPSTLGVL
Sbjct: 204 KLNNGGNLRNVLDVGCGVASFGAYLLSHDIVAMSLAPNDVHENQIQFALERGIPSTLGVL 263
Query: 269 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR 328
GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF YSSPEAYAHD ENR
Sbjct: 264 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAHDQENR 323
Query: 329 RIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNV 388
RI AM+D+LK MCWK+V+KKDQTVIW KP+SNSCYLKR PG+ PPLC+ DDD D+TWNV
Sbjct: 324 RIGMAMHDILKRMCWKVVAKKDQTVIWGKPMSNSCYLKRDPGTLPPLCNLDDDSDLTWNV 383
Query: 389 LMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYW 448
M+ACIS YSAKMH +KG+GLVPWP RLT+ PPRLEEVGV+ EEF ED +WQ+RV +YW
Sbjct: 384 SMQACISRYSAKMHKQKGSGLVPWPQRLTSAPPRLEEVGVSAEEFKEDSTVWQLRVAEYW 443
Query: 449 KQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTV 508
K+M+ V Q+++ RNVMDMNSNLGGFAAAL +KDVWVMNVAP+ SA+LKI+YDRGL+GTV
Sbjct: 444 KEMRLVIQRDSIRNVMDMNSNLGGFAAALINKDVWVMNVAPINSSAKLKIVYDRGLLGTV 503
Query: 509 HDW 511
HDW
Sbjct: 504 HDW 506
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42573369|ref|NP_974781.1| putative methyltransferase PMT9 [Arabidopsis thaliana] gi|332004650|gb|AED92033.1| putative methyltransferase PMT9 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/513 (76%), Positives = 441/513 (85%), Gaps = 8/513 (1%)
Query: 1 MKQKSEQQIR-TSKQLTYVLLGLISVLGLVCLYYGSTSAPGLRRSDDESSGFDGSDPVLG 59
MK +++R T K TYVL+G I++LGL CLYYGS+ APG R+SD+ FDGS+ +
Sbjct: 1 MKHFRTERVRATPKLFTYVLVGFIALLGLTCLYYGSSFAPGSRKSDE----FDGSNNRVR 56
Query: 60 T-FGRNRDFDDLFEDQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHY 118
T G R+ D + EVPKS+PICD R+SELIPCLDRNL YQLKLK NLSLMEHY
Sbjct: 57 TGIGSLRNRDIVLAVSRF--EVPKSVPICDSRHSELIPCLDRNLHYQLKLKLNLSLMEHY 114
Query: 119 ERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEK 178
E HCPP ERR+NCLVPPP ++IP+RWP SRDEVWKANIPHTHLA+EKSDQ+WMVVNG+K
Sbjct: 115 EHHCPPSERRFNCLVPPPVVFQIPLRWPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDK 174
Query: 179 INFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDI 238
INFPGGGTHFH+GADKYI++LA+MLKFP DKLNNGG+IRNVLDVGCGVASFGAYLLSHDI
Sbjct: 175 INFPGGGTHFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDI 234
Query: 239 IAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI 298
IAMSLAPNDVH+NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI
Sbjct: 235 IAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI 294
Query: 299 LLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKP 358
LLLELDRLLRPGGYFVYSSPEAYAHDPENR+I NAM+DL K MCWK+V+K+DQ+VIW KP
Sbjct: 295 LLLELDRLLRPGGYFVYSSPEAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKP 354
Query: 359 ISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTA 418
ISNSCYLKR PG PPLC S DDPD TWNV MKACISPYS +MH E+ +GLVPWP RLTA
Sbjct: 355 ISNSCYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVPWPRRLTA 414
Query: 419 PPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALK 478
PPPRLEE+GVT E+F ED W++RV++YWK +K + QKN+ RNVMDM+SNLGGFAAAL
Sbjct: 415 PPPRLEEIGVTPEQFREDTETWRLRVIEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALN 474
Query: 479 DKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDW 511
DKDVWVMNV PV+ S R+KIIYDRGLIG HDW
Sbjct: 475 DKDVWVMNVMPVQSSPRMKIIYDRGLIGATHDW 507
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|157849758|gb|ABV89662.1| dehydration-responsive protein-related [Brassica rapa] | Back alignment and taxonomy information |
|---|
Score = 791 bits (2044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/513 (74%), Positives = 437/513 (85%), Gaps = 13/513 (2%)
Query: 1 MKQKSEQQIRTS--KQLTYVLLGLISVLGLVCLYYGSTSAPGLRRSDDESSGFDGSDPVL 58
MK +++R + K TYVL+G I++LGL CLYYGS+ APG R+SD+ FDGS P
Sbjct: 1 MKPSRSERVRATPPKLFTYVLVGFIALLGLTCLYYGSSFAPGSRKSDE----FDGSSPAR 56
Query: 59 GTFGRNRDFDDLFEDQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHY 118
F NRD E EVP+SIPICD ++S+LIPCLDR+L +QLKL+ NL+LMEHY
Sbjct: 57 AGFASNRD-------GESRVEVPRSIPICDSKHSDLIPCLDRDLYHQLKLRLNLTLMEHY 109
Query: 119 ERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEK 178
E HCPPPERR+NCLVPPP GY IP++WP SRDEVWKANIPHTHLA+EKSDQ+WMVVNG+K
Sbjct: 110 EHHCPPPERRFNCLVPPPAGYMIPIKWPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDK 169
Query: 179 INFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDI 238
INFPGGGTHFH GADKYI++LA+MLKFP DKLNNGG+IRNVLDVGCGVASFGAYLLSHDI
Sbjct: 170 INFPGGGTHFHYGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDI 229
Query: 239 IAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI 298
IAMSLAPNDVH+NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI
Sbjct: 230 IAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI 289
Query: 299 LLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKP 358
LLLELDRLLRPGGYFVYSSPEAYAHDPENR+I AM+DL + MCW++V+K+DQ+VIW KP
Sbjct: 290 LLLELDRLLRPGGYFVYSSPEAYAHDPENRKIGTAMHDLFRRMCWRVVAKRDQSVIWGKP 349
Query: 359 ISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTA 418
ISNSCYLKR PG +PPLC S DDPD TWNV MKACI+PYS +MH E+ +GLVPWP RLTA
Sbjct: 350 ISNSCYLKRGPGVQPPLCPSGDDPDATWNVSMKACITPYSVRMHKERWSGLVPWPRRLTA 409
Query: 419 PPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALK 478
PPPRLEE+GVT E+F ED W+ RV++YWK +K + QKN+ RNVMDM+SNLGGFAAAL
Sbjct: 410 PPPRLEEIGVTPEQFREDTETWRHRVMEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALN 469
Query: 479 DKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDW 511
DKDVWVMNV PV+ R+KIIYDRGLIG HDW
Sbjct: 470 DKDVWVMNVIPVQSQPRMKIIYDRGLIGATHDW 502
|
Source: Brassica rapa Species: Brassica rapa Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7573468|emb|CAB87782.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/533 (74%), Positives = 442/533 (82%), Gaps = 28/533 (5%)
Query: 1 MKQKSEQQIR-TSKQLTYVLLGLISVLGLVCLYYGSTSAPGLRRSDDESSGFDGSDPVLG 59
MK +++R T K TYVL+G I++LGL CLYYGS+ APG R+SD+ FDGS+ +
Sbjct: 1 MKHFRTERVRATPKLFTYVLVGFIALLGLTCLYYGSSFAPGSRKSDE----FDGSNNRVR 56
Query: 60 T-FGRNRDFDDLFEDQELNPEVPKSIPI--------------------CDMRYSELIPCL 98
T G R+ D + EVPKS+PI CD R+SELIPCL
Sbjct: 57 TGIGSLRNRDIVLAVSRF--EVPKSVPISSLNLGFSCSGCTHFDPVQICDSRHSELIPCL 114
Query: 99 DRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIP 158
DRNL YQLKLK NLSLMEHYE HCPP ERR+NCLVPPP GYKIP+RWP SRDEVWKANIP
Sbjct: 115 DRNLHYQLKLKLNLSLMEHYEHHCPPSERRFNCLVPPPVGYKIPLRWPVSRDEVWKANIP 174
Query: 159 HTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRN 218
HTHLA+EKSDQ+WMVVNG+KINFPGGGTHFH+GADKYI++LA+MLKFP DKLNNGG+IRN
Sbjct: 175 HTHLAQEKSDQNWMVVNGDKINFPGGGTHFHNGADKYIVSLAQMLKFPGDKLNNGGSIRN 234
Query: 219 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSR 278
VLDVGCGVASFGAYLLSHDIIAMSLAPNDVH+NQIQFALERGIPSTLGVLGTKRLPYPSR
Sbjct: 235 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSR 294
Query: 279 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLL 338
SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR+I NAM+DL
Sbjct: 295 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRKIGNAMHDLF 354
Query: 339 KSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYS 398
K MCWK+V+K+DQ+VIW KPISNSCYLKR PG PPLC S DDPD TWNV MKACISPYS
Sbjct: 355 KRMCWKVVAKRDQSVIWGKPISNSCYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYS 414
Query: 399 AKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKN 458
+MH E+ +GLVPWP RLTAPPPRLEE+GVT E+F ED W++RV++YWK +K + QKN
Sbjct: 415 VRMHKERWSGLVPWPRRLTAPPPRLEEIGVTPEQFREDTETWRLRVIEYWKLLKPMVQKN 474
Query: 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDW 511
+ RNVMDM+SNLGGFAAAL DKDVWVMNV PV+ S R+KIIYDRGLIG HDW
Sbjct: 475 SIRNVMDMSSNLGGFAAALNDKDVWVMNVMPVQSSPRMKIIYDRGLIGATHDW 527
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224060159|ref|XP_002300064.1| predicted protein [Populus trichocarpa] gi|222847322|gb|EEE84869.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/426 (85%), Positives = 397/426 (93%)
Query: 86 ICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRW 145
ICD+++SELIPCLDRNLIYQLKLKPNL+LMEHYERHCPPPERR+NCL+PPP GYKIP+RW
Sbjct: 1 ICDIKHSELIPCLDRNLIYQLKLKPNLTLMEHYERHCPPPERRFNCLIPPPIGYKIPIRW 60
Query: 146 PASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKF 205
P SRDEVWKANIPHTHLA+EKSDQ+WMVVNGEKINFPGGGTHFHDGA+KYI++LARMLKF
Sbjct: 61 PESRDEVWKANIPHTHLAQEKSDQNWMVVNGEKINFPGGGTHFHDGANKYIVSLARMLKF 120
Query: 206 PSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTL 265
P+DKL+NGGNIRNVLDVGCGVASFGAYLLSH IIAMS+APNDVHENQIQFALERGIPSTL
Sbjct: 121 PNDKLHNGGNIRNVLDVGCGVASFGAYLLSHSIIAMSIAPNDVHENQIQFALERGIPSTL 180
Query: 266 GVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDP 325
GVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF YSSPEAYA DP
Sbjct: 181 GVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYALDP 240
Query: 326 ENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVT 385
ENRRIWNAM+DLL+ MCW++ KKDQTVIW KP+ N CYLKR PG++PPLCS+ DDPD T
Sbjct: 241 ENRRIWNAMHDLLRRMCWRVAVKKDQTVIWQKPLGNGCYLKRDPGTQPPLCSTGDDPDAT 300
Query: 386 WNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVV 445
WNV MKACI+PYSAKMH E+G+GLVPWP RLTA PRLE++GV+ E+FHED IWQ RV
Sbjct: 301 WNVHMKACIAPYSAKMHKERGSGLVPWPKRLTAASPRLEDIGVSPEQFHEDTNIWQFRVN 360
Query: 446 DYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLI 505
+YWKQMK+V +KN FRNVMDMNSNLGGF AALKD DVWVMNVAPV MSARLKIIYDRGLI
Sbjct: 361 EYWKQMKSVVRKNYFRNVMDMNSNLGGFGAALKDTDVWVMNVAPVNMSARLKIIYDRGLI 420
Query: 506 GTVHDW 511
GTVHDW
Sbjct: 421 GTVHDW 426
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 514 | ||||||
| TAIR|locus:2145658 | 612 | AT5G14430 [Arabidopsis thalian | 0.984 | 0.826 | 0.724 | 9.5e-208 | |
| TAIR|locus:2129660 | 608 | AT4G14360 [Arabidopsis thalian | 0.838 | 0.708 | 0.677 | 1.1e-172 | |
| TAIR|locus:2090935 | 611 | AT3G23300 [Arabidopsis thalian | 0.856 | 0.720 | 0.672 | 4.4e-171 | |
| TAIR|locus:2018329 | 623 | AT1G04430 [Arabidopsis thalian | 0.931 | 0.768 | 0.626 | 3.1e-170 | |
| TAIR|locus:2063947 | 694 | AT2G39750 [Arabidopsis thalian | 0.811 | 0.600 | 0.476 | 8.3e-106 | |
| TAIR|locus:2150670 | 600 | AT5G04060 [Arabidopsis thalian | 0.824 | 0.706 | 0.452 | 3.7e-103 | |
| TAIR|locus:2153704 | 682 | AT5G06050 [Arabidopsis thalian | 0.856 | 0.645 | 0.427 | 7.7e-103 | |
| TAIR|locus:2076264 | 591 | AT3G10200 [Arabidopsis thalian | 0.824 | 0.717 | 0.454 | 6.9e-102 | |
| TAIR|locus:2195955 | 655 | AT1G77260 [Arabidopsis thalian | 0.828 | 0.650 | 0.435 | 4.9e-101 | |
| TAIR|locus:2196651 | 639 | AT1G33170 [Arabidopsis thalian | 0.840 | 0.676 | 0.435 | 1.7e-98 |
| TAIR|locus:2145658 AT5G14430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2009 (712.3 bits), Expect = 9.5e-208, P = 9.5e-208
Identities = 371/512 (72%), Positives = 413/512 (80%)
Query: 1 MKQKSEQQIR-TSKQLTYXXXXXXXXXXXXXXYYGSTSAPGLRRXXXXXXXXXXXXPVLG 59
MK +++R T K TY YYGS+ APG R+ +G
Sbjct: 1 MKHFRTERVRATPKLFTYVLVGFIALLGLTCLYYGSSFAPGSRKSDEFDGSNNRVRTGIG 60
Query: 60 TFGRNRDFDDLFEDQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYE 119
+ RNRD + EVPKS+PICD R+SELIPCLDRNL YQLKLK NLSLMEHYE
Sbjct: 61 SL-RNRDI--VLAVSRF--EVPKSVPICDSRHSELIPCLDRNLHYQLKLKLNLSLMEHYE 115
Query: 120 RHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKI 179
HCPP ERR+NCLVPPP GYKIP+RWP SRDEVWKANIPHTHLA+EKSDQ+WMVVNG+KI
Sbjct: 116 HHCPPSERRFNCLVPPPVGYKIPLRWPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDKI 175
Query: 180 NFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDII 239
NFPGGGTHFH+GADKYI++LA+MLKFP DKLNNGG+IRNVLDVGCGVASFGAYLLSHDII
Sbjct: 176 NFPGGGTHFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDII 235
Query: 240 AMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIX 299
AMSLAPNDVH+NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI
Sbjct: 236 AMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIL 295
Query: 300 XXXXXXXXXPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 359
PGGYFVYSSPEAYAHDPENR+I NAM+DL K MCWK+V+K+DQ+VIW KPI
Sbjct: 296 LLELDRLLRPGGYFVYSSPEAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKPI 355
Query: 360 SNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAP 419
SNSCYLKR PG PPLC S DDPD TWNV MKACISPYS +MH E+ +GLVPWP RLTAP
Sbjct: 356 SNSCYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVPWPRRLTAP 415
Query: 420 PPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD 479
PPRLEE+GVT E+F ED W++RV++YWK +K + QKN+ RNVMDM+SNLGGFAAAL D
Sbjct: 416 PPRLEEIGVTPEQFREDTETWRLRVIEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALND 475
Query: 480 KDVWVMNVAPVRMSARLKIIYDRGLIGTVHDW 511
KDVWVMNV PV+ S R+KIIYDRGLIG HDW
Sbjct: 476 KDVWVMNVMPVQSSPRMKIIYDRGLIGATHDW 507
|
|
| TAIR|locus:2129660 AT4G14360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1678 (595.7 bits), Expect = 1.1e-172, P = 1.1e-172
Identities = 292/431 (67%), Positives = 347/431 (80%)
Query: 81 PKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYK 140
P+S P+CD R+SELIPCLDRNLIYQ++LK +LSLMEHYERHCPPPERR+NCL+PPP GYK
Sbjct: 73 PRSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPNGYK 132
Query: 141 IPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALA 200
+P++WP SRDEVWK NIPHTHLA EKSDQ+WMVV G+KINFPGGGTHFH GADKYI ++A
Sbjct: 133 VPIKWPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGDKINFPGGGTHFHYGADKYIASMA 192
Query: 201 RMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG 260
ML +P++ LNNGG +R V DVGCGVASFG YLLS DI+ MSLAPNDVH+NQIQFALERG
Sbjct: 193 NMLNYPNNVLNNGGRLRTVFDVGCGVASFGGYLLSSDILTMSLAPNDVHQNQIQFALERG 252
Query: 261 IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXXPGGYFVYSSPEA 320
IP++LGVLGTKRLPYPSRSFEL+HCSRCRIDWLQRDGI PGGYF YSSPEA
Sbjct: 253 IPASLGVLGTKRLPYPSRSFELSHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEA 312
Query: 321 YAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDD 380
YA D E+ RIW M L++ MCWKI +K++QTVIW KP++N CYL+R PG++PPLC SD+
Sbjct: 313 YAQDEEDLRIWREMSALVERMCWKIAAKRNQTVIWQKPLTNDCYLEREPGTQPPLCRSDN 372
Query: 381 DPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIW 440
DPD W V M+ACI+ YS H KG+GL PWPARLT+PPPRL + G +T F +D +W
Sbjct: 373 DPDAVWGVNMEACITSYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTGMFEKDTELW 432
Query: 441 QVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIY 500
+ RV YW + + +T RN+MDM +++G FAAALK+KDVWVMNV P LK+IY
Sbjct: 433 RQRVDTYWDLLSPRIESDTVRNIMDMKASMGSFAAALKEKDVWVMNVVPEDGPNTLKLIY 492
Query: 501 DRGLIGTVHDW 511
DRGL+G VH W
Sbjct: 493 DRGLMGAVHSW 503
|
|
| TAIR|locus:2090935 AT3G23300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1663 (590.5 bits), Expect = 4.4e-171, P = 4.4e-171
Identities = 296/440 (67%), Positives = 346/440 (78%)
Query: 72 EDQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNC 131
ED N P+S P+CD R+SELIPCLDRNLIYQ++LK +LSLMEHYERHCPPPERR+NC
Sbjct: 67 EDVVGNGFTPRSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNC 126
Query: 132 LVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDG 191
L+PPP GYKIP++WP SRDEVWK NIPHTHLA EKSDQ+WMVV GEKINFPGGGTHFH G
Sbjct: 127 LIPPPPGYKIPIKWPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGEKINFPGGGTHFHYG 186
Query: 192 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHEN 251
ADKYI ++A ML FP++ LNNGG +R LDVGCGVASFG YLL+ +I+ MSLAPNDVH+N
Sbjct: 187 ADKYIASMANMLNFPNNVLNNGGRLRTFLDVGCGVASFGGYLLASEIMTMSLAPNDVHQN 246
Query: 252 QIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXXPGG 311
QIQFALERGIP+ LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI PGG
Sbjct: 247 QIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGG 306
Query: 312 YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGS 371
YF YSSPEAYA D E+ RIW M L+ MCW I +K++QTVIW KP++N CYL R PG+
Sbjct: 307 YFAYSSPEAYAQDEEDLRIWREMSALVGRMCWTIAAKRNQTVIWQKPLTNDCYLGREPGT 366
Query: 372 RPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTE 431
+PPLC+SD DPD + V M+ACI+ YS H KG+GL PWPARLT+PPPRL + G +T+
Sbjct: 367 QPPLCNSDSDPDAVYGVNMEACITQYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTD 426
Query: 432 EFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVR 491
F +D W+ RV YW + Q +T RN+MDM +++G FAAALK+KDVWVMNV P
Sbjct: 427 IFEKDTETWRQRVDTYWDLLSPKIQSDTVRNIMDMKASMGSFAAALKEKDVWVMNVVPED 486
Query: 492 MSARLKIIYDRGLIGTVHDW 511
LK+IYDRGL+G VH W
Sbjct: 487 GPNTLKLIYDRGLMGAVHSW 506
|
|
| TAIR|locus:2018329 AT1G04430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1655 (587.6 bits), Expect = 3.1e-170, P = 3.1e-170
Identities = 302/482 (62%), Positives = 359/482 (74%)
Query: 32 YYGSTSAPGLRRXXXXXXXXXXXXPVLGTFGRNRDF--DDLFEDQELNPEVPKSIPICDM 89
YYGS+S G L N D DD + E + V KS P+CD
Sbjct: 31 YYGSSSQ-GASALEYGRSLRKLGSSYLSGDDDNGDTKQDDSVANAEDSLVVAKSFPVCDD 89
Query: 90 RYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPASR 149
R+SE+IPCLDRN IYQ++LK +LSLMEHYERHCPPPERR+NCL+PPP GYK+P++WP SR
Sbjct: 90 RHSEIIPCLDRNFIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPSGYKVPIKWPKSR 149
Query: 150 DEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDK 209
DEVWKANIPHTHLA+EKSDQ+WMV GEKI+FPGGGTHFH GADKYI ++A ML F +D
Sbjct: 150 DEVWKANIPHTHLAKEKSDQNWMVEKGEKISFPGGGTHFHYGADKYIASIANMLNFSNDV 209
Query: 210 LNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLG 269
LN+ G +R VLDVGCGVASFGAYLL+ DI+ MSLAPNDVH+NQIQFALERGIP+ LGVLG
Sbjct: 210 LNDEGRLRTVLDVGCGVASFGAYLLASDIMTMSLAPNDVHQNQIQFALERGIPAYLGVLG 269
Query: 270 TKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXXPGGYFVYSSPEAYAHDPENRR 329
TKRLPYPSRSFE AHCSRCRIDWLQRDG+ PGGYF YSSPEAYA D EN +
Sbjct: 270 TKRLPYPSRSFEFAHCSRCRIDWLQRDGLLLLELDRVLRPGGYFAYSSPEAYAQDEENLK 329
Query: 330 IWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVL 389
IW M L++ MCW+I K++QTV+W KP+SN CYL+R PG++PPLC SD DPD V
Sbjct: 330 IWKEMSALVERMCWRIAVKRNQTVVWQKPLSNDCYLEREPGTQPPLCRSDADPDAVAGVS 389
Query: 390 MKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWK 449
M+ACI+PYS H KG+GL PWPARLT+ PPRL + G +T+ F +D +W+ +V YW
Sbjct: 390 MEACITPYSKHDHKTKGSGLAPWPARLTSSPPRLADFGYSTDMFEKDTELWKQQVDSYWN 449
Query: 450 QMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVH 509
M + + NT RN+MDM +++G FAAALKDKDVWVMNV LK+IYDRGLIGT H
Sbjct: 450 LMSSKVKSNTVRNIMDMKAHMGSFAAALKDKDVWVMNVVSPDGPNTLKLIYDRGLIGTNH 509
Query: 510 DW 511
+W
Sbjct: 510 NW 511
|
|
| TAIR|locus:2063947 AT2G39750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1047 (373.6 bits), Expect = 8.3e-106, P = 8.3e-106
Identities = 209/439 (47%), Positives = 266/439 (60%)
Query: 82 KSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKI 141
K +C E IPCLD + + KLK + E +ERHCP + NCLVPPPKGY+
Sbjct: 175 KKFGMCPESMREYIPCLDNTDVIK-KLK-STERGERFERHCPEKGKGLNCLVPPPKGYRQ 232
Query: 142 PVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALAR 201
P+ WP SRDEVW +N+PHT L E+K Q+W+ + K FPGGGT F GAD+Y L +
Sbjct: 233 PIPWPKSRDEVWFSNVPHTRLVEDKGGQNWISRDKNKFKFPGGGTQFIHGADQY---LDQ 289
Query: 202 MLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI 261
M K SD + G +IR +DVGCGVASFGAYLLS D++ MS+AP DVHENQIQFALERG+
Sbjct: 290 MSKMVSD-ITFGKHIRVAMDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQIQFALERGV 348
Query: 262 PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXXPGGYFVYSSPEAY 321
P+ T+RL YPS++F+L HCSRCRI+W + DGI GGYF +++ Y
Sbjct: 349 PAMAAAFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYFAWAAQPVY 408
Query: 322 AHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDD 381
H+P W M +L S+CWK+V K+ IW KP +N CYL R G++PPLC DD
Sbjct: 409 KHEPALEEQWTEMLNLTISLCWKLVKKEGYVAIWQKPFNNDCYLSREAGTKPPLCDESDD 468
Query: 382 PDVTWNVLMKACISPYSAKMHHEKGTG-LVP-WPARLTAPPPRLEEVGVTT-----EEFH 434
PD W +K CIS EKG G VP WPARL PP RL+ + + E F
Sbjct: 469 PDNVWYTNLKPCISRIP-----EKGYGGNVPLWPARLHTPPDRLQTIKFDSYIARKELFK 523
Query: 435 EDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM 492
+ W + Y + +K +K RNV+DM + GGFAAAL D D WV++V PV
Sbjct: 524 AESKYWNEIIGGYVRALKW--KKMKLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSG 581
Query: 493 SARLKIIYDRGLIGTVHDW 511
L +IYDRGL+G +HDW
Sbjct: 582 PNTLPVIYDRGLLGVMHDW 600
|
|
| TAIR|locus:2150670 AT5G04060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
Identities = 196/433 (45%), Positives = 262/433 (60%)
Query: 80 VPKS-IPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKG 138
+P+S + +C ++++E IPC + + QL NLS E ERHCPP E+R CLVPPPK
Sbjct: 78 IPESGVNVCPLKFNEYIPCHNVTYVQQLLPSLNLSRREELERHCPPLEQRLFCLVPPPKD 137
Query: 139 YKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILA 198
YKIP+RWP SRD VW++N+ HTHLAE K Q+W+ G+ FPGGGTHF GA +YI
Sbjct: 138 YKIPIRWPTSRDYVWRSNVNHTHLAEVKGGQNWVHEQGQLWWFPGGGTHFKHGAPEYIQR 197
Query: 199 LARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE 258
L M + L + G + VLDVGCGVASF AYLL I MS AP D HENQIQFALE
Sbjct: 198 LGNMTTNETGDLLSAG-VEQVLDVGCGVASFAAYLLPLGIKTMSFAPKDGHENQIQFALE 256
Query: 259 RGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXXPGGYFVYSSP 318
RGI + + + TK++PYP+ SF++ HCSRCR+DW + DG+ P GYFVYS+P
Sbjct: 257 RGIRAMISAIATKQMPYPAASFDMVHCSRCRVDWHENDGVLMKEVNRLLRPNGYFVYSAP 316
Query: 319 EAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSS 378
AY D + IW+ + +L +MCWK++S+K QT IW K +C K +C
Sbjct: 317 PAYRKDKDFPVIWDKLVNLTSAMCWKLISRKVQTAIWVKEDDEACLRKNAELELITICGV 376
Query: 379 DDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIG 438
+D +W V ++ C+ ++ +K + L RL++ P L E G++ +EF D
Sbjct: 377 EDVSKASWKVPLRDCVD--ISENRQQKPSSLTD---RLSSYPTSLREKGISEDEFTLDTN 431
Query: 439 IWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI 498
W+ +V YW+ M K RNVMD N+ +GGFAAA+ +WVMNV P M+ L
Sbjct: 432 FWREQVNQYWELMNV--NKTEVRNVMDTNAFIGGFAAAMNSYPLWVMNVVPATMNDTLSG 489
Query: 499 IYDRGLIGTVHDW 511
IY RGL G HDW
Sbjct: 490 IYQRGLTGAYHDW 502
|
|
| TAIR|locus:2153704 AT5G06050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1019 (363.8 bits), Expect = 7.7e-103, P = 7.7e-103
Identities = 198/463 (42%), Positives = 278/463 (60%)
Query: 60 TFGRNRDFDDLFEDQELNPEVPKSI---PICDMRYSELIPCLDRNLIYQLKLKPNLSLME 116
T G +F+ +D + S+ IC +E IPCLD + +K + + E
Sbjct: 122 TLGNQTEFESSDDDDIKSTTARVSVRKFEICSENMTEYIPCLDN--VEAIKRLNSTARGE 179
Query: 117 HYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNG 176
+ER+CP NC VP P+GY+ P+ WP SRDEVW N+PHT L E+K Q+W+
Sbjct: 180 RFERNCPNDGMGLNCTVPIPQGYRSPIPWPRSRDEVWFNNVPHTKLVEDKGGQNWIYKEN 239
Query: 177 EKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH 236
+K FPGGGT F GAD+Y+ +++M+ P ++ G + R VLD+GCGVASFGAYL+S
Sbjct: 240 DKFKFPGGGTQFIHGADQYLDQISQMI--PD--ISFGNHTRVVLDIGCGVASFGAYLMSR 295
Query: 237 DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 296
+++ MS+AP DVHENQIQFALERG+P+ + T+RL YPS++F+L HCSRCRI+W + D
Sbjct: 296 NVLTMSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRDD 355
Query: 297 GIXXXXXXXXXXPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWA 356
GI GGYFV+++ Y H+ W M +L +CW +V K+ IW
Sbjct: 356 GILLLEVNRMLRAGGYFVWAAQPVYKHEKALEEQWEEMLNLTTRLCWVLVKKEGYIAIWQ 415
Query: 357 KPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARL 416
KP++N+CYL R G PPLC+S+DDPD W V +KACI+ + G L PWPARL
Sbjct: 416 KPVNNTCYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITRIEENGY---GANLAPWPARL 472
Query: 417 TAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQM-----KTVAQKNT-FRNVMDMNSNL 470
PP RL+ + + + +++ + + + YWK++ + K RNV+DM +
Sbjct: 473 LTPPDRLQTIQIDSYIARKELFVAESK---YWKEIISNYVNALHWKQIGLRNVLDMRAGF 529
Query: 471 GGFAAALKDK--DVWVMNVAPVRMSARLKIIYDRGLIGTVHDW 511
GGFAAAL + D WV+NV PV L +IYDRGL+G +HDW
Sbjct: 530 GGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDW 572
|
|
| TAIR|locus:2076264 AT3G10200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
Identities = 197/433 (45%), Positives = 264/433 (60%)
Query: 80 VPKS-IPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKG 138
+P+S + +C + ++E IPC + ++QL NLS E ERHCPP E R CLVPPP
Sbjct: 67 IPESGMNVCPLEFNEYIPCHNVTYVHQLLPSLNLSRREDLERHCPPLEHRLFCLVPPPND 126
Query: 139 YKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILA 198
YKIP+RWP SRD VW++N+ HTHLA+ K Q+W+ G+ FPGGGTHF GA +YI
Sbjct: 127 YKIPIRWPTSRDYVWRSNVNHTHLAQVKGGQNWVHEQGQFWWFPGGGTHFKHGAAEYIQR 186
Query: 199 LARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE 258
L M+ + L + G ++ VLDVGCGVASF AYLL I +S AP D HENQIQFALE
Sbjct: 187 LGNMMTNETGDLRSAGVVQ-VLDVGCGVASFAAYLLPLGIQTISFAPKDGHENQIQFALE 245
Query: 259 RGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXXPGGYFVYSSP 318
RGI + + + TK+LPYP+ SFE+ HCSRCR+DW DGI P G+FVYSSP
Sbjct: 246 RGIGAMISAVATKQLPYPAASFEMVHCSRCRVDWHTNDGILLKEVHRLLRPNGFFVYSSP 305
Query: 319 EAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSS 378
AY D E IW+ + +L +MCWK++S+K QT IW K C ++ LC
Sbjct: 306 PAYRKDKEYPMIWDKLVNLTSAMCWKLISRKVQTAIWIKEEKEVCLKQKAELKLISLCDV 365
Query: 379 DDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIG 438
+D +W V +K C+ S + E+ + L RL+A P L ++G++ +E+ D
Sbjct: 366 EDVLKPSWKVPLKDCVQ-ISGQTE-ERPSSLAE---RLSAYPATLRKIGISEDEYTSDTV 420
Query: 439 IWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI 498
W+ +V YW+ M + RNVMDMN+ +GGFAAA+ VWVMN+ P M+ L
Sbjct: 421 FWREQVNHYWRLMNV--NETEVRNVMDMNAFIGGFAAAMNSYPVWVMNIVPATMNDTLSG 478
Query: 499 IYDRGLIGTVHDW 511
I++RGL G HDW
Sbjct: 479 IFERGLNGAFHDW 491
|
|
| TAIR|locus:2195955 AT1G77260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1002 (357.8 bits), Expect = 4.9e-101, P = 4.9e-101
Identities = 196/450 (43%), Positives = 273/450 (60%)
Query: 72 EDQELNPEVP---KSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERR 128
E++E +PEV + + +CD + IPCLD ++K N E+YERHCP ++
Sbjct: 129 EEKE-SPEVGFQIEKLKLCDKTKIDYIPCLDNE--EEIKRLNNTDRGENYERHCP--KQS 183
Query: 129 YNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHF 188
+CL+PPP GYK P++WP SRD++W N+PHT L E+K Q+W+ +K FPGGGT F
Sbjct: 184 LDCLIPPPDGYKKPIQWPQSRDKIWFNNVPHTRLVEDKGGQNWIRREKDKFVFPGGGTQF 243
Query: 189 HDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDV 248
GAD+Y+ +++M+ P + G R LD+GCGVASFGA+L+ + +S+AP DV
Sbjct: 244 IHGADQYLDQISQMI--PD--ITFGSRTRVALDIGCGVASFGAFLMQRNTTTLSVAPKDV 299
Query: 249 HENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXX 308
HENQIQFALERG+P+ + V T+RL YPS+SFE+ HCSRCRI+W + DGI
Sbjct: 300 HENQIQFALERGVPAMVAVFATRRLLYPSQSFEMIHCSRCRINWTRDDGILLLEVNRMLR 359
Query: 309 PGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRV 368
GGYFV+++ Y H+ + W M DL +CW+++ K+ +W KP++NSCY+ R
Sbjct: 360 AGGYFVWAAQPVYKHEDNLQEQWKEMLDLTNRICWELIKKEGYIAVWRKPLNNSCYVSRE 419
Query: 369 PGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVG- 427
G++PPLC DDDPD W V MK CI+ + G + WPARL PP RL+ +
Sbjct: 420 AGTKPPLCRPDDDPDDVWYVDMKPCITRLPDNGY---GANVSTWPARLHDPPERLQSIQM 476
Query: 428 ---VTTEEFHE-DIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK--D 481
++ +E + + W V Y + + K RNV+DM + GGFAAAL D D
Sbjct: 477 DAYISRKEIMKAESRFWLEVVESYVRVFRWKEFK--LRNVLDMRAGFGGFAAALNDLGLD 534
Query: 482 VWVMNVAPVRMSARLKIIYDRGLIGTVHDW 511
WVMN+ PV L +IYDRGL G +HDW
Sbjct: 535 CWVMNIVPVSGFNTLPVIYDRGLQGAMHDW 564
|
|
| TAIR|locus:2196651 AT1G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
Identities = 203/466 (43%), Positives = 281/466 (60%)
Query: 66 DFDDLFE-DQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPP 124
DF+ + + ++ + K CDM SE PC DR + + + ++M++ ERHCP
Sbjct: 91 DFESHHKLELKITNQTVKYFEPCDMSLSEYTPCEDR----ERGRRFDRNMMKYRERHCPS 146
Query: 125 PERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGG 184
+ CL+PPP YKIP +WP SRD W NIPH L+ EK+ Q+W+ V GE+ FPGG
Sbjct: 147 KDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSIEKAIQNWIQVEGERFRFPGG 206
Query: 185 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLA 244
GT F GAD YI +AR++ P L +G IR +D GCGVASFGAYLL DI+AMS A
Sbjct: 207 GTMFPRGADAYIDDIARLI--P---LTDGA-IRTAIDTGCGVASFGAYLLKRDIVAMSFA 260
Query: 245 PNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXX 304
P D HE Q+QFALERG+P+ +G++G++RLPYP+R+F+LAHCSRC I W Q DG+
Sbjct: 261 PRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFQNDGLYLTEVD 320
Query: 305 XXXXPGGYFVYSSP--------EAYAHDPEN-RRIWNAMYDLLKSMCWKIVSKKDQTVIW 355
PGGY++ S P + + E+ ++ +++ D +S+CWK V++K IW
Sbjct: 321 RVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIEDAARSLCWKKVTEKGDLSIW 380
Query: 356 AKPISN-SCY-LKRVPGSRPPLCSSDDDPDVTWNVLMKACISPY-SAKMHHE-KGTGLVP 411
KPI++ C LKRV + PPLCS D PD W +++C++P A E G L
Sbjct: 381 QKPINHVECNKLKRVHKT-PPLCSKSDLPDFAWYKDLESCVTPLPEANSSDEFAGGALED 439
Query: 412 WPARLTAPPPRLEEVG-----VTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDM 466
WP R A PPR+ +G + E+F ED +W+ R+ Y+KQ+ + FRN+MDM
Sbjct: 440 WPNRAFAVPPRI--IGGTIPDINAEKFREDNEVWKERI-SYYKQIMPELSRGRFRNIMDM 496
Query: 467 NSNLGGFAAALKDKDVWVMNVAPVRMSAR-LKIIYDRGLIGTVHDW 511
N+ LGGFAAA+ WVMNV PV + L +I++RG IGT DW
Sbjct: 497 NAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGFIGTYQDW 542
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q8VZV7 | PMT9_ARATH | 2, ., 1, ., 1, ., - | 0.7699 | 0.9824 | 0.8251 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00020637001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (612 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 514 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 0.0 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 9e-09 | |
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 7e-06 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 1e-04 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 2e-04 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 700 bits (1808), Expect = 0.0
Identities = 244/423 (57%), Positives = 286/423 (67%), Gaps = 10/423 (2%)
Query: 93 ELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEV 152
+ IPCLD + + L + MEH ERHCPP E + CLVPPP GYK P+ WP SRD+V
Sbjct: 1 DYIPCLDNDRAIKFLL--SRERMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKV 58
Query: 153 WKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNN 212
W AN+PHT LAEEK Q+W+ V G+K FPGGGT F GAD YI LA+M+
Sbjct: 59 WYANVPHTKLAEEKGGQNWVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDI----AW 114
Query: 213 GGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR 272
GG +R LDVGCGVASFGAYLLS D++ MS AP DVHE Q+QFALERG+P+ LGVLGT+R
Sbjct: 115 GGRVRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRR 174
Query: 273 LPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN-RRIW 331
LPYPSRSF++AHCSRC I W DGILLLE+DR+LRPGGYFV S P YA D E+ + W
Sbjct: 175 LPYPSRSFDMAHCSRCLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVYARDEEDLQEEW 234
Query: 332 NAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMK 391
AM L KS+CWK+V+KK IW KP++NSCY KR PG +PPLC DDPD W V M+
Sbjct: 235 KAMEALAKSLCWKLVAKKGDIAIWQKPVNNSCYNKREPGKKPPLCKDSDDPDAAWYVPME 294
Query: 392 ACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEV---GVTTEEFHEDIGIWQVRVVDYW 448
ACI+P H G L WP RLTA PPRL GV+ E F D +W+ RV Y
Sbjct: 295 ACITPLPEVSHEVGGGWLEKWPERLTAVPPRLASGQIGGVSAEAFKADTELWKRRVSKYK 354
Query: 449 KQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTV 508
+ +K + K RNVMDMN+ GGFAAAL D VWVMNV PV L +IYDRGLIG
Sbjct: 355 RLLKLLIDKGRVRNVMDMNAGFGGFAAALIDDPVWVMNVVPVDSPDTLPVIYDRGLIGIY 414
Query: 509 HDW 511
HDW
Sbjct: 415 HDW 417
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 9e-09
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 220 LDVGCGVASFGAYL---LSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLPY 275
LDVGCG L + + D+ + A +R V+G + LP+
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGV-----DLSPEMLALARKRAPRKF--VVGDAEDLPF 53
Query: 276 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV 314
P SF++ S + L L E+ R+L+PGG V
Sbjct: 54 PDESFDVVVSSLV-LHHLPDPERALREIARVLKPGGKLV 91
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 7e-06
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 32/117 (27%)
Query: 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHE-NQIQFALERGIPSTLGV----- 267
G +RNV+D+ G F A L+ + M++ P V + + +RG+ +G+
Sbjct: 364 GRVRNVMDMNAGFGGFAAALIDDPVWVMNVVP--VDSPDTLPVIYDRGL---IGIYHDWC 418
Query: 268 --LGTKRLPYPSRSFELAHCS--------RCRIDWLQRDGILLLELDRLLRPGGYFV 314
T YP R+++L H RC ++ +LLE+DR+LRPGG +
Sbjct: 419 EPFST----YP-RTYDLLHADHLFSLYKKRCNLE------DILLEMDRILRPGGAVI 464
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 16/104 (15%)
Query: 220 LDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER------GIPSTLGVLG 269
LD+GCG + LL + + D+ ++ A ER + +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGV-----DISPAALEAAAERLAALGLLDAVRVRLDV 55
Query: 270 TKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF 313
+ SF++ S + L +L L RLL+PGG
Sbjct: 56 LDAIDLDPGSFDVVVASNV-LHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 219 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLG-TKRLPYPS 277
VLD+GCG LL ND+ + A + + + G ++LP
Sbjct: 38 VLDIGCGTGYLTRALLKR-FPQAEFIANDISAGMLAQAKTKLSENVQFICGDAEKLPLED 96
Query: 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317
SF+L + + W L EL R+L+PGG +S+
Sbjct: 97 SSFDLIVSNLA-LQWCDDLSQALSELARVLKPGGLLAFST 135
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 514 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.71 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.69 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.58 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.57 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.56 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.55 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.55 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.53 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.52 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.51 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.47 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.47 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.47 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.44 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.43 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.42 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.42 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.41 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.4 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.39 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.37 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.37 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.37 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.35 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.35 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.33 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.33 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.32 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.32 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.32 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.31 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.31 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.28 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.28 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.27 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.24 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.24 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.24 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.23 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.23 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.22 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.21 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.2 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.2 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.17 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.17 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.17 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.16 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.16 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.15 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.14 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.14 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.13 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.13 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.13 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.12 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.11 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.1 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.1 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.1 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.1 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.09 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.09 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.09 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.08 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.06 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.06 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.04 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.04 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.04 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.04 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.04 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.04 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.03 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.03 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.03 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.02 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.01 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.01 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.0 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.99 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.99 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.99 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.98 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.98 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.95 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.95 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.94 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.93 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.93 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.91 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.89 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.88 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.88 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.88 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.87 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.83 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.83 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.81 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.81 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.79 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.79 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.77 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.77 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.74 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.73 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.71 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.7 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.68 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.67 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.67 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.64 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.62 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.59 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.59 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.57 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.56 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.56 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.56 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.54 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.54 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.54 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.54 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.51 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.47 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.47 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.46 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.46 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.46 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.45 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.44 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.43 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.43 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.42 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.42 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.41 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.38 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.36 | |
| PLN02366 | 308 | spermidine synthase | 98.36 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.34 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.33 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.31 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.3 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.29 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.28 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.25 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.25 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.24 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.24 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.23 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.23 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.23 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.21 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.2 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.18 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.17 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.15 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.12 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.12 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.11 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.1 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.04 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.04 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.02 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.97 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.97 | |
| PLN02476 | 278 | O-methyltransferase | 97.96 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.96 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.96 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.93 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.91 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.9 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.89 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.83 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.74 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.73 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.71 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.66 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.63 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.62 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.61 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.6 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.58 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.57 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.52 | |
| PLN02823 | 336 | spermine synthase | 97.51 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.41 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.34 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.34 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.31 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.31 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.27 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.27 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.27 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.26 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.26 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.24 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.24 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.24 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.2 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.19 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.15 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.1 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.07 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.04 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.03 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.01 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.98 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.89 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.86 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.86 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.84 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.81 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.75 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.7 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 96.67 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.66 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.64 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 96.63 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.61 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 96.55 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.43 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.24 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.19 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.15 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.09 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.03 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 95.91 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 95.83 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 95.78 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.69 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 95.49 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 95.49 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 95.48 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 95.48 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 95.4 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 95.16 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 95.09 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.07 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.98 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 94.62 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 94.58 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 94.35 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.28 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 94.27 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 94.18 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 94.17 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 94.03 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 93.95 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 93.78 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 93.68 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 93.59 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 93.56 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 93.4 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 93.2 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 93.14 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 92.73 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 92.32 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 92.19 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 91.6 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 90.87 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 90.59 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 89.68 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 89.62 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 88.86 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 87.59 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 87.5 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 87.39 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 86.84 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 85.7 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 84.91 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 84.84 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 84.8 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 81.91 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-125 Score=986.63 Aligned_cols=415 Identities=56% Similarity=1.061 Sum_probs=395.6
Q ss_pred CcccCCChhHHhHhhcCCCcccccccccCCCCCCCCCCccCCCCCCCCCCCCCCCChhhhhhccCCCCccccccccccce
Q 010274 93 ELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWM 172 (514)
Q Consensus 93 ~~~pc~d~~~~~~~~~~~~~~~~~~~er~C~~~~~~~~Clv~~P~~y~~P~~wP~s~d~~W~~n~~~~~L~~~k~~q~Wv 172 (514)
|||||+|+.++.++ +.++++++|||||||+.+++++||||+|++|+.|++||+|||++|++|+||++|+++|+.|+||
T Consensus 1 dy~PC~D~~~~~~~--~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv 78 (506)
T PF03141_consen 1 DYIPCLDNSRAIKF--LLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWV 78 (506)
T ss_pred CCcCCCCHHHHHhh--ccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccce
Confidence 79999999986443 3589999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHH
Q 010274 173 VVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQ 252 (514)
Q Consensus 173 ~~~g~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~ 252 (514)
+.+|+.+.|||||++|.+|+++|+++|.++++.. ..++.++++||||||+|+|+++|++++|+++++++.+.++++
T Consensus 79 ~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~----~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~q 154 (506)
T PF03141_consen 79 RVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLI----KWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQ 154 (506)
T ss_pred eecCCEEEeCCCCccccCCHHHHHHHHHHHhhcc----ccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchh
Confidence 9999999999999999999999999999999863 345788999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCC-CChhHHHhH
Q 010274 253 IQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIW 331 (514)
Q Consensus 253 ~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~-~~~e~~~~~ 331 (514)
+|+|.+||+++.+.+...++|||++++||+|||+.|.+.|.++.+.+|.|++|+|||||+|+++.|+.+. ..++..+.|
T Consensus 155 vqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~ 234 (506)
T PF03141_consen 155 VQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEW 234 (506)
T ss_pred hhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHH
Confidence 9999999999999888899999999999999999999999999999999999999999999999999984 455667799
Q ss_pred HHHHHHHHhcCcEEEEEecceEEEeccCcchhhhccCCCCCCCCcCCCCCCchhhhhcccccccccccCcccccCCCCCC
Q 010274 332 NAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 411 (514)
Q Consensus 332 ~~l~~ll~~~Gf~~v~~~~~~~iw~Kp~~~~c~~~r~~~~~P~lC~~~~~~~~~wy~~L~~ci~~~~~~~~~~~~~~~~~ 411 (514)
+.++++++++||+++.++++++|||||.+++||..|+....|+||++++++|++||++|++||+++|+..+..+++++++
T Consensus 235 ~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~ 314 (506)
T PF03141_consen 235 NAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPK 314 (506)
T ss_pred HHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCC
Confidence 99999999999999999999999999999999999988889999998899999999999999999999766667899999
Q ss_pred CCCCCCCCCCCccc---cCCChhhHhHhHhhHHHHHHHHHHHhccccccCcccccccccccchhHHhhhcCCCceeeeec
Q 010274 412 WPARLTAPPPRLEE---VGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVA 488 (514)
Q Consensus 412 wp~rl~~~~~~~~~---~g~~~~~~~~d~~~W~~~v~~y~~~~~~~~~~~~~rnvmdm~a~~ggfaaal~~~~~wvmnvv 488 (514)
||+||+++|+||.. .|+++|+|++|+++|+++|++||+++...+++++|||||||||+||||||||+++||||||||
T Consensus 315 WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVV 394 (506)
T PF03141_consen 315 WPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVV 394 (506)
T ss_pred ChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEec
Confidence 99999999999998 899999999999999999999999888789999999999999999999999999999999999
Q ss_pred cCCCCCCcceeeccccccccccCCC
Q 010274 489 PVRMSARLKIIYDRGLIGTVHDWYA 513 (514)
Q Consensus 489 p~~~~~tl~~i~~rglig~~hdwce 513 (514)
|+.++|||+|||||||||+||||||
T Consensus 395 P~~~~ntL~vIydRGLIG~yhDWCE 419 (506)
T PF03141_consen 395 PVSGPNTLPVIYDRGLIGVYHDWCE 419 (506)
T ss_pred ccCCCCcchhhhhcccchhccchhh
Confidence 9999999999999999999999999
|
; GO: 0008168 methyltransferase activity |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.1e-17 Score=159.49 Aligned_cols=136 Identities=19% Similarity=0.333 Sum_probs=99.6
Q ss_pred CCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
++.+|||||||||.++..+++ ..|+++|+++.++..+...........+.++++|++.|||+|++||+|.+++ .+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~f-gl 129 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISF-GL 129 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeee-hh
Confidence 456899999999999999985 3567776666555444422221112238899999999999999999999999 59
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEe---CCC-----------------------------CCCChhHHHhH---HHHH
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSS---PEA-----------------------------YAHDPENRRIW---NAMY 335 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~---P~~-----------------------------~~~~~e~~~~~---~~l~ 335 (514)
+++++.+.+|+|++|||||||++++.. |.. |.++.+..+.+ +++.
T Consensus 130 rnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~ 209 (238)
T COG2226 130 RNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELK 209 (238)
T ss_pred hcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999999988744 111 11111111111 4788
Q ss_pred HHHHhcCcEEEEEecc
Q 010274 336 DLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 336 ~ll~~~Gf~~v~~~~~ 351 (514)
.+++++||..+..+..
T Consensus 210 ~~~~~~gf~~i~~~~~ 225 (238)
T COG2226 210 QMIEKAGFEEVRYENL 225 (238)
T ss_pred HHHHhcCceEEeeEee
Confidence 8899999998886654
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-17 Score=160.10 Aligned_cols=101 Identities=24% Similarity=0.381 Sum_probs=73.7
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
+.+|||+|||||.++..+++ ..|+++|+++.++..+..+.......++.++++|++.+|+++++||+|+|++ .+
T Consensus 48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f-gl 126 (233)
T PF01209_consen 48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF-GL 126 (233)
T ss_dssp --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES--G
T ss_pred CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh-hH
Confidence 45899999999999998874 3577887777777666544433333478999999999999999999999999 58
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+.+++....|+|+.|+|||||++++.+
T Consensus 127 rn~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 127 RNFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp GG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 888999999999999999999999743
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-14 Score=142.68 Aligned_cols=135 Identities=12% Similarity=0.113 Sum_probs=99.3
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHH--H-cCCCeEEEeecCCCCCCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFAL--E-RGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~--~-rg~~~~~~~~d~~~lp~~~~sFDlV~~s~ 287 (514)
..+|||||||+|.++..++. ..|+++|+++.++..+..+... . ...++.+..+|+..+|+++++||+|++++
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 36899999999999988874 2578887777766555422211 1 12367889999999999999999999888
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCC-----------------------Chh-------HHH---hHHHH
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH-----------------------DPE-------NRR---IWNAM 334 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~-----------------------~~e-------~~~---~~~~l 334 (514)
++|+.+++..+++|+.|+|||||++++.+...... ..+ ... ..+++
T Consensus 154 -~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el 232 (261)
T PLN02233 154 -GLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEEL 232 (261)
T ss_pred -ccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHH
Confidence 58889999999999999999999999876321100 000 001 12478
Q ss_pred HHHHHhcCcEEEEEecc
Q 010274 335 YDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 335 ~~ll~~~Gf~~v~~~~~ 351 (514)
.++++++||+.+.....
T Consensus 233 ~~ll~~aGF~~~~~~~~ 249 (261)
T PLN02233 233 EKLALEAGFSSAKHYEI 249 (261)
T ss_pred HHHHHHCCCCEEEEEEc
Confidence 89999999998876553
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-14 Score=147.83 Aligned_cols=134 Identities=19% Similarity=0.361 Sum_probs=100.3
Q ss_pred CCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
...+|||||||+|.++..|++ ..|+++|+++.++..+. +.+.+.+. ++.+.++|...+|+++++||+|++.. .
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~-~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~-~ 195 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARAN-ALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME-S 195 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHH-HHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC-c
Confidence 346899999999999999885 46888888877665554 33334443 57899999999999999999999887 5
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCCCC--CC----C-hhHH-------H--------hHHHHHHHHHhcCcEEEE
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAY--AH----D-PENR-------R--------IWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~--~~----~-~e~~-------~--------~~~~l~~ll~~~Gf~~v~ 347 (514)
++|+++...+++++.|+|||||+|++++.... .. . .... . .-+++.++++++||..+.
T Consensus 196 ~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~ 275 (340)
T PLN02244 196 GEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIK 275 (340)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeE
Confidence 88889999999999999999999999764210 00 0 0000 0 124777889999998876
Q ss_pred Eec
Q 010274 348 KKD 350 (514)
Q Consensus 348 ~~~ 350 (514)
.++
T Consensus 276 ~~d 278 (340)
T PLN02244 276 TED 278 (340)
T ss_pred eee
Confidence 554
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.3e-15 Score=122.98 Aligned_cols=93 Identities=29% Similarity=0.488 Sum_probs=73.8
Q ss_pred EEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccccccccchH
Q 010274 220 LDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 297 (514)
Q Consensus 220 LDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~ 297 (514)
||+|||+|.++..|++. .+.++...|+++.+++.++++.. ...+...+...+|+++++||+|++.. +++|.++..
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~-~~~~~~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNS-VLHHLEDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEES-HGGGSSHHH
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcccccccccccccc-ceeeccCHH
Confidence 89999999999999875 23444445666667777777643 34588899999999999999999888 688888899
Q ss_pred HHHHHHHhhCCCCeEEEE
Q 010274 298 ILLLELDRLLRPGGYFVY 315 (514)
Q Consensus 298 ~lL~el~RvLrPGG~lvi 315 (514)
.+++++.|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-14 Score=133.46 Aligned_cols=122 Identities=29% Similarity=0.520 Sum_probs=89.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
...+|||||||+|.++..|+.. .++++|+++.++. . ........+....+.++++||+|+|+. +++|
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~-~l~~ 90 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIE-----K-----RNVVFDNFDAQDPPFPDGSFDLIICND-VLEH 90 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHH-----H-----TTSEEEEEECHTHHCHSSSEEEEEEES-SGGG
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHh-----h-----hhhhhhhhhhhhhhccccchhhHhhHH-HHhh
Confidence 3468999999999999999864 5666666655443 3 223333333344556778999999997 7999
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeCCCCC----------CChh---HHH--hHHHHHHHHHhcCcEEEE
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYA----------HDPE---NRR--IWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P~~~~----------~~~e---~~~--~~~~l~~ll~~~Gf~~v~ 347 (514)
++++..+|+++.++|||||+++++++.... .... ... .-+++..+++++||++++
T Consensus 91 ~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 91 LPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp SSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred cccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999986421 1110 000 125899999999999886
|
... |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6e-14 Score=141.06 Aligned_cols=158 Identities=18% Similarity=0.226 Sum_probs=108.1
Q ss_pred CCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHc---
Q 010274 186 THFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER--- 259 (514)
Q Consensus 186 ~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~r--- 259 (514)
..++.+.....+.+.+.+... +..+|||||||+|..+..|+. ..|+++|+++.++ +.|+++
T Consensus 31 ~~~~~gg~~~~~~~l~~l~l~--------~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~-----~~a~~~~~~ 97 (263)
T PTZ00098 31 DYISSGGIEATTKILSDIELN--------ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMV-----NIAKLRNSD 97 (263)
T ss_pred CCCCCCchHHHHHHHHhCCCC--------CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHH-----HHHHHHcCc
Confidence 344555444555566555432 235899999999999988874 3566666655444 444443
Q ss_pred CCCeEEEeecCCCCCCCCCCceEEEeccccccccc--chHHHHHHHHhhCCCCeEEEEEeCCCCC--CChhHHH------
Q 010274 260 GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ--RDGILLLELDRLLRPGGYFVYSSPEAYA--HDPENRR------ 329 (514)
Q Consensus 260 g~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~--d~~~lL~el~RvLrPGG~lvis~P~~~~--~~~e~~~------ 329 (514)
...+.+...|+...++++++||+|++..+ ++|.. +...+++++.++|||||+|+++++.... .......
T Consensus 98 ~~~i~~~~~D~~~~~~~~~~FD~V~s~~~-l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~ 176 (263)
T PTZ00098 98 KNKIEFEANDILKKDFPENTFDMIYSRDA-ILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKR 176 (263)
T ss_pred CCceEEEECCcccCCCCCCCeEEEEEhhh-HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhc
Confidence 23577888888888999899999998774 44553 6788999999999999999998753211 0111110
Q ss_pred -----hHHHHHHHHHhcCcEEEEEecceEEEec
Q 010274 330 -----IWNAMYDLLKSMCWKIVSKKDQTVIWAK 357 (514)
Q Consensus 330 -----~~~~l~~ll~~~Gf~~v~~~~~~~iw~K 357 (514)
.-.++.++++++||+.+..++.+..|..
T Consensus 177 ~~~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~ 209 (263)
T PTZ00098 177 KYTLIPIQEYGDLIKSCNFQNVVAKDISDYWLE 209 (263)
T ss_pred CCCCCCHHHHHHHHHHCCCCeeeEEeCcHHHHH
Confidence 1147889999999999988776554443
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.5e-14 Score=146.48 Aligned_cols=136 Identities=14% Similarity=0.148 Sum_probs=102.0
Q ss_pred CCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
...+|||||||+|.++..|+. ..|+++|+++.++..+... +...+ .++.+..++++.+++++++||+|+|.. ++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~-vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLE-VI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhh-HH
Confidence 346899999999999998885 4678887777666555422 22222 257788888888888888999999888 79
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCC---------------ChhHHH------hHHHHHHHHHhcCcEEEEEe
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH---------------DPENRR------IWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~---------------~~e~~~------~~~~l~~ll~~~Gf~~v~~~ 349 (514)
+|+.++..+++++.++|||||.++++++..... .+.... .-+++..+++++||++++..
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 999999999999999999999999987643110 000001 12589999999999998775
Q ss_pred cce
Q 010274 350 DQT 352 (514)
Q Consensus 350 ~~~ 352 (514)
...
T Consensus 289 G~~ 291 (322)
T PLN02396 289 GFV 291 (322)
T ss_pred eeE
Confidence 543
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-13 Score=132.41 Aligned_cols=102 Identities=21% Similarity=0.263 Sum_probs=81.2
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||+|||+|.++..+++ ..|+++|+++.++..+....+.....++.+..+|...+++++++||+|++.. .+
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~-~l 124 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF-GL 124 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec-cc
Confidence 36899999999999988874 3678888877666555433322222357788888888888888999999887 58
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
++.++...+++++.++|+|||++++.++
T Consensus 125 ~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 125 RNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 8889999999999999999999998764
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.8e-14 Score=138.22 Aligned_cols=102 Identities=21% Similarity=0.371 Sum_probs=88.6
Q ss_pred CCeEEEECCCCchHHHHHh--cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La--~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..+|||||||-|.++..|| ++.|+|+|++...+..+. ..|.+.++.+.+....++++....++||+|+|.. +++|+
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmE-VlEHv 137 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCME-VLEHV 137 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhh-HHHcc
Confidence 3689999999999999999 468889988887776666 5566777777788887888876668999999999 79999
Q ss_pred cchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 294 QRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
++++.+++.+.+++||||.+++++++
T Consensus 138 ~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 138 PDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred CCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 99999999999999999999999975
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.9e-13 Score=131.44 Aligned_cols=99 Identities=24% Similarity=0.439 Sum_probs=81.7
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..+|||+|||+|.++..|+. ..++++|++ +.+++.++++.....+..+|.+.+|+++++||+|+++. .++|.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s-----~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~-~l~~~ 116 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGSQVTALDLS-----PPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNL-AVQWC 116 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCCeEEEEECC-----HHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECc-hhhhc
Confidence 46899999999999988875 355666554 55566777665555678889999999989999999887 68999
Q ss_pred cchHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 294 QRDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
.++..+|.++.++|||||.++++++..
T Consensus 117 ~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 117 GNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 999999999999999999999987643
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-13 Score=134.01 Aligned_cols=134 Identities=20% Similarity=0.270 Sum_probs=97.8
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCC-CCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP-YPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp-~~~~sFDlV~~s~~~l 290 (514)
..+|||+|||+|.++..|+. ..|+++|+++.++..+. +.+.+.+. ++.+..++...++ +.+++||+|+|.. ++
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~-~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~-vl 122 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAK-QAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA-VL 122 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHH-HHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh-HH
Confidence 46899999999999999985 46778887777766554 33333343 4677778876664 5668999999887 68
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCC---------Ch----------------hHHHhHHHHHHHHHhcCcEE
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH---------DP----------------ENRRIWNAMYDLLKSMCWKI 345 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~---------~~----------------e~~~~~~~l~~ll~~~Gf~~ 345 (514)
+|+.++..++.++.++|||||++++...+.... .. .....-+++.++++++||++
T Consensus 123 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~ 202 (255)
T PRK11036 123 EWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQI 202 (255)
T ss_pred HhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeE
Confidence 999999999999999999999999865432100 00 00001257889999999999
Q ss_pred EEEecc
Q 010274 346 VSKKDQ 351 (514)
Q Consensus 346 v~~~~~ 351 (514)
+.....
T Consensus 203 ~~~~gi 208 (255)
T PRK11036 203 MGKTGV 208 (255)
T ss_pred eeeeeE
Confidence 876654
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-13 Score=133.70 Aligned_cols=95 Identities=23% Similarity=0.420 Sum_probs=76.3
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+|||||||+|.++..|+.. .|+++|++ +.+++.|++++ +.+..+|+..++ ++++||+|+|+. ++|
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s-----~~~~~~a~~~~--~~~~~~d~~~~~-~~~~fD~v~~~~-~l~ 100 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSS-----PEMVAAARERG--VDARTGDVRDWK-PKPDTDVVVSNA-ALQ 100 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECC-----HHHHHHHHhcC--CcEEEcChhhCC-CCCCceEEEEeh-hhh
Confidence 368999999999999998853 56666555 45556666654 567778887775 557999999888 689
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
|++++..+++++.++|||||++++..+.
T Consensus 101 ~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 101 WVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 9999999999999999999999997653
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-12 Score=142.54 Aligned_cols=135 Identities=24% Similarity=0.327 Sum_probs=97.8
Q ss_pred CCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
...+|||||||+|.++..|+. ..|+|+|+++.++..+..+ +.....++.+..+|...+++++++||+|+|.. +++
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~-~l~ 343 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALER-AIGRKCSVEFEVADCTKKTYPDNSFDVIYSRD-TIL 343 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-hhcCCCceEEEEcCcccCCCCCCCEEEEEECC-ccc
Confidence 346899999999999888874 3577777776555444322 22223457888899888888888999999887 688
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCCCCC--ChhHH----------HhHHHHHHHHHhcCcEEEEEecc
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAH--DPENR----------RIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~--~~e~~----------~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
|++++..++.++.|+|||||.++++++..... ..... ..-.++.++++++||.++..++.
T Consensus 344 h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 344 HIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAEDR 415 (475)
T ss_pred ccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeecc
Confidence 89999999999999999999999987432110 11100 01246788899999988865544
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.4e-13 Score=129.51 Aligned_cols=100 Identities=23% Similarity=0.283 Sum_probs=84.0
Q ss_pred CCCeEEEECCCCchHHHHHhc----------CCCccccCChhhhhHHHHHHHHHcCC----CeEEEeecCCCCCCCCCCc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS----------HDIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGTKRLPYPSRSF 280 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~----------~~V~gvdis~~dis~a~~~~A~~rg~----~~~~~~~d~~~lp~~~~sF 280 (514)
...++||++||||.++..+.+ .+|+..|+++.++..+. +.|.+++. .+.++.+|+++|||++++|
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk-qRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK-QRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH-HHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 347899999999999888773 46888998888887666 44544543 2678888999999999999
Q ss_pred eEEEecccccccccchHHHHHHHHhhCCCCeEEEEE
Q 010274 281 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 281 DlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis 316 (514)
|+.+.++ -+....+++..|+|++|+|||||+|.+-
T Consensus 179 D~yTiaf-GIRN~th~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 179 DAYTIAF-GIRNVTHIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred eeEEEec-ceecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 9999888 5888899999999999999999999863
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-12 Score=132.05 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=97.8
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHc--CCCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~r--g~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
..+|||||||+|.++..++. ..++++|+++.++. .|+++ ..++.+..+|...+++++++||+|+++. +
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~-----~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~-~ 187 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLA-----KAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAG-S 187 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHH-----HHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcC-h
Confidence 35899999999998888764 35667766655544 44333 2356778889899999889999999877 6
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCCCC--CCChhHH------HhHHHHHHHHHhcCcEEEEEecceEEE
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAY--AHDPENR------RIWNAMYDLLKSMCWKIVSKKDQTVIW 355 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~--~~~~e~~------~~~~~l~~ll~~~Gf~~v~~~~~~~iw 355 (514)
+++.+++..+|+++.|+|||||.+++..+... ....... ...+++.++++++||+.++.++....|
T Consensus 188 L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~ 261 (340)
T PLN02490 188 IEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKW 261 (340)
T ss_pred hhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhh
Confidence 88888999999999999999999988764221 0000000 123678899999999999876654433
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.9e-13 Score=136.02 Aligned_cols=134 Identities=22% Similarity=0.189 Sum_probs=97.4
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHH-HcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFAL-ERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~-~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
+++|||||||+|.++..+++. .|+|+|.++.++.+....... ....++.+..++++.+|+ +++||+|+|.. +++
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~-vl~ 200 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMG-VLY 200 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECC-hhh
Confidence 368999999999999998852 488998887766433211111 113467888888899988 68999999877 688
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCCCC-----CChhH----------HHhHHHHHHHHHhcCcEEEEEecc
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYA-----HDPEN----------RRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~~~-----~~~e~----------~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
|..++..+|++++++|+|||.+++.+..... ..+.. ...-.++.++++++||+.++....
T Consensus 201 H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 201 HRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDV 275 (322)
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeC
Confidence 8999999999999999999999986421100 00000 011257889999999998876654
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-12 Score=129.01 Aligned_cols=132 Identities=17% Similarity=0.195 Sum_probs=95.9
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
..+|||||||+|..+..++. ..|+++|+++.++..+.... ...+ .++.+..++.+.+++++++||+|++.. +
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~-~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~-v 155 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANA-RKAGYTNVEFRLGEIEALPVADNSVDVIISNC-V 155 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHH-HHcCCCCEEEEEcchhhCCCCCCceeEEEEcC-c
Confidence 46899999999987665542 24788888877666555332 2333 357788889989999888999999765 7
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHH--------------HhHHHHHHHHHhcCcEEEEEe
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR--------------RIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~--------------~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
+++.++...+++++.|+|||||+|++++........... ....++.++++++||..+...
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~ 229 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQ 229 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEE
Confidence 888888889999999999999999997632211111110 123478889999999887553
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-12 Score=124.93 Aligned_cols=136 Identities=16% Similarity=0.276 Sum_probs=92.2
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
.+|||+|||+|.++..|++ ..|+++|+++.++..+.... ...+. ++.+.+.|...++++ ++||+|+|+. ++||.
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~-~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~-~~~~~ 108 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIK-AAENLDNLHTAVVDLNNLTFD-GEYDFILSTV-VLMFL 108 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-HHcCCCcceEEecChhhCCcC-CCcCEEEEec-chhhC
Confidence 5799999999999999985 46888988887776665333 33343 467777887777765 6799999987 46665
Q ss_pred c--chHHHHHHHHhhCCCCeEEEEEe-CC--CCC--CChhHHHhHHHHHHHHHhcCcEEEEEecceEEEec
Q 010274 294 Q--RDGILLLELDRLLRPGGYFVYSS-PE--AYA--HDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAK 357 (514)
Q Consensus 294 ~--d~~~lL~el~RvLrPGG~lvis~-P~--~~~--~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~~~iw~K 357 (514)
. +...++.++.++|||||++++.. .. ... ......-.-.++.+.++ ||+++........+++
T Consensus 109 ~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~~~~~~~~ 177 (197)
T PRK11207 109 EAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNEDVGELHR 177 (197)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeCCHHhhcc
Confidence 4 34679999999999999965432 11 110 00000001135666666 8998887665555544
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.7e-12 Score=121.59 Aligned_cols=149 Identities=21% Similarity=0.299 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEe
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGV 267 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~ 267 (514)
..|.+.+.+.+.. ....+|||+|||+|.++..++. ..++++|+++..+..+... ......++.+..
T Consensus 5 ~~~~~~~~~~~~~--------~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~ 75 (241)
T PRK08317 5 RRYRARTFELLAV--------QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVR 75 (241)
T ss_pred HHHHHHHHHHcCC--------CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEe
Confidence 3455555555543 2336899999999999998874 2467777666544333322 111244677888
Q ss_pred ecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCC----C-Ch----hHHHhH-------
Q 010274 268 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA----H-DP----ENRRIW------- 331 (514)
Q Consensus 268 ~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~----~-~~----e~~~~~------- 331 (514)
.|...+++++++||+|++.. ++++..++..+++++.++|||||++++..+.... . .. +....|
T Consensus 76 ~d~~~~~~~~~~~D~v~~~~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
T PRK08317 76 GDADGLPFPDGSFDAVRSDR-VLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADP 154 (241)
T ss_pred cccccCCCCCCCceEEEEec-hhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCC
Confidence 88888888888999999888 6888899999999999999999999998764211 0 00 111111
Q ss_pred ---HHHHHHHHhcCcEEEEEecc
Q 010274 332 ---NAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 332 ---~~l~~ll~~~Gf~~v~~~~~ 351 (514)
..+.++++++||..+..+..
T Consensus 155 ~~~~~~~~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 155 WLGRRLPGLFREAGLTDIEVEPY 177 (241)
T ss_pred cHHHHHHHHHHHcCCCceeEEEE
Confidence 35778899999987765443
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-12 Score=127.24 Aligned_cols=94 Identities=20% Similarity=0.291 Sum_probs=73.1
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
..+|||||||||.++..+++. .|+|+|+++ .|++.|+++. .+.+++++.+|+++++||+|++++ .+++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~-----~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~-~l~~ 122 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAE-----NMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSF-ALHA 122 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCH-----HHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecC-hhhc
Confidence 358999999999999998864 566665554 4555555542 356788999999999999999988 5889
Q ss_pred ccchHHHHHHHHhhCCCCe-EEEEEeC
Q 010274 293 LQRDGILLLELDRLLRPGG-YFVYSSP 318 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG-~lvis~P 318 (514)
.++++.+++|+.|+|||.+ .+-++.|
T Consensus 123 ~~d~~~~l~e~~RvLkp~~~ile~~~p 149 (226)
T PRK05785 123 SDNIEKVIAEFTRVSRKQVGFIAMGKP 149 (226)
T ss_pred cCCHHHHHHHHHHHhcCceEEEEeCCC
Confidence 9999999999999999954 3334433
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.6e-12 Score=130.35 Aligned_cols=132 Identities=17% Similarity=0.160 Sum_probs=94.0
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHH---cCCCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE---RGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~---rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
.++|||||||+|.++..++.. .|+|+|.++.++.+.. .++. ....+.+...++..++.. .+||+|+|+. +
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~--~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~g-v 197 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFE--AVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMG-V 197 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHH--HHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcc-h
Confidence 368999999999998887742 4788888876654421 2221 123456677778888764 4899999887 6
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCCCCCC-----ChhH-H---------HhHHHHHHHHHhcCcEEEEEecc
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH-----DPEN-R---------RIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~-----~~e~-~---------~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
++|..++..+|++++++|||||.|++.+...... .+.. . ..-.++..+++++||+.++..+.
T Consensus 198 L~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 198 LYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDV 274 (314)
T ss_pred hhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEec
Confidence 8889999999999999999999999865311000 0000 0 01257889999999999976654
|
Known examples to date are restricted to the proteobacteria. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-12 Score=119.37 Aligned_cols=101 Identities=23% Similarity=0.409 Sum_probs=81.8
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCC--CCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp--~~~~sFDlV~~s~ 287 (514)
..+|||+|||+|.++..|++ .+++++|+++.++..+. +.+++.+. ++.+.+.|+.+++ ++ +.||+|++..
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~-~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAK-KRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHH-HHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhh-cccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 46899999999999999982 45788887777776555 33333444 5899999988877 66 7999999887
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
++++..++..+++++.++|++||.+++..+.
T Consensus 82 -~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 -VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 6889999999999999999999999998765
|
... |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-12 Score=110.91 Aligned_cols=100 Identities=24% Similarity=0.353 Sum_probs=75.5
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHH-cCCCeEEEeecC-CCCCCCCCCceEEEecc-cc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLGT-KRLPYPSRSFELAHCSR-CR 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~-rg~~~~~~~~d~-~~lp~~~~sFDlV~~s~-~~ 289 (514)
.+|||||||+|.++..+++ ..|+++|+++..+..++.+.... ...++.+...|. ...... +.||+|++.. +.
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGFTL 81 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSGSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCCcc
Confidence 5899999999999999985 46888988888777666444232 245788898888 334433 5699999887 32
Q ss_pred cccc--cchHHHHHHHHhhCCCCeEEEEEe
Q 010274 290 IDWL--QRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 290 l~~~--~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
.++. ++...+++++.+.|+|||+|++.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2222 445779999999999999999975
|
... |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.1e-12 Score=120.09 Aligned_cols=137 Identities=15% Similarity=0.260 Sum_probs=92.8
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
.+|||+|||+|.++.+|+. ..|+++|+++.++..+. +.+...+.++.+...|....+++ ++||+|+|+. ++++..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~-~~~~~~ 108 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVL-DMKARENLPLRTDAYDINAAALN-EDYDFIFSTV-VFMFLQ 108 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHHHhCCCceeEeccchhcccc-CCCCEEEEec-ccccCC
Confidence 5799999999999999985 46888888887776655 34445566666777776666654 5899999887 466653
Q ss_pred --chHHHHHHHHhhCCCCeEEEEEe-CC--CCCC--ChhHHHhHHHHHHHHHhcCcEEEEEecceEEEecc
Q 010274 295 --RDGILLLELDRLLRPGGYFVYSS-PE--AYAH--DPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKP 358 (514)
Q Consensus 295 --d~~~lL~el~RvLrPGG~lvis~-P~--~~~~--~~e~~~~~~~l~~ll~~~Gf~~v~~~~~~~iw~Kp 358 (514)
+...+++++.++|||||++++.. .. .+.. .........++.++++ +|+++........|++.
T Consensus 109 ~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~~~~~~ 177 (195)
T TIGR00477 109 AGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVGELHAT 177 (195)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeeccccccccc
Confidence 34679999999999999966542 11 1000 0011112346666665 48888877655555443
|
Part of a tellurite-reducing operon tehA and tehB |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.6e-12 Score=121.61 Aligned_cols=132 Identities=19% Similarity=0.258 Sum_probs=93.5
Q ss_pred eEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 218 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
+|||||||+|.++..+++ ..++++|+++..+..+... ..+.+. .+.+...|....+++ ++||+|++.. +++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~-~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~-~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRER-IRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFE-VIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHhcCCCcceEEEecccccCCCC-CCCCEeehHH-HHH
Confidence 699999999999988874 3567777766555444422 223333 457777787666665 5899999877 688
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCC--CCCCh-----hHHHhHHHHHHHHHhcCcEEEEEecce
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEA--YAHDP-----ENRRIWNAMYDLLKSMCWKIVSKKDQT 352 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~--~~~~~-----e~~~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (514)
|+.+...+++++.++|||||++++.++.. +.... .......++.+++++.||+++...+..
T Consensus 79 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~ 146 (224)
T smart00828 79 HIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDAS 146 (224)
T ss_pred hCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECc
Confidence 88889999999999999999999987521 11000 001122467789999999998776643
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.7e-12 Score=126.67 Aligned_cols=96 Identities=27% Similarity=0.455 Sum_probs=73.6
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
.+|||||||+|.++..|+.. ...+..+.+.|+++.+++.|.++..++.+.++|...+|+++++||+|++... +
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~-----~ 161 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA-----P 161 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC-----C
Confidence 57999999999999988742 1111223334555666677777777788999999999999999999997652 1
Q ss_pred chHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 295 RDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 295 d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
..+.++.|+|||||+|++..|..
T Consensus 162 ---~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 162 ---CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred ---CCHHHHHhhccCCCEEEEEeCCC
Confidence 24689999999999999998765
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-11 Score=116.99 Aligned_cols=120 Identities=19% Similarity=0.145 Sum_probs=91.9
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||||||+|.++..++. ..|+++|+++.++..+... +++.+. ++.+..++...++. +++||+|+|..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~-~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~--- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREV-AAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA--- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHH-HHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc---
Confidence 46899999999998888763 4788998888777666633 334444 47888888888776 67999999754
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
..+...+++++.++|||||++++..+... -.++..+.+..||.+.+....
T Consensus 121 --~~~~~~~l~~~~~~LkpGG~lv~~~~~~~---------~~~l~~~~~~~~~~~~~~~~~ 170 (187)
T PRK00107 121 --VASLSDLVELCLPLLKPGGRFLALKGRDP---------EEEIAELPKALGGKVEEVIEL 170 (187)
T ss_pred --ccCHHHHHHHHHHhcCCCeEEEEEeCCCh---------HHHHHHHHHhcCceEeeeEEE
Confidence 24567899999999999999999765432 346788889999987765443
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.6e-12 Score=125.20 Aligned_cols=98 Identities=22% Similarity=0.366 Sum_probs=79.2
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+|||||||+|.++..++. ..|+++|++ +.+++.|+++..++.+..+|+..+. ++++||+|+|+. .++
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s-----~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~-~l~ 104 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSS-----PAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANA-SLQ 104 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECC-----HHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEcc-Chh
Confidence 46899999999999998885 346666555 4555666666666788888877664 446999999888 689
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
|+.+...+++++.++|||||.+++..|..
T Consensus 105 ~~~d~~~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 105 WLPDHLELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 99999999999999999999999987654
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.6e-11 Score=118.13 Aligned_cols=99 Identities=26% Similarity=0.453 Sum_probs=79.4
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||||||+|.++..++.. .++++|+++ .+++.++++. .++.+...|....++++++||+|+++. ++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~-----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~-~l 108 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISA-----GMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNL-AL 108 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChH-----HHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhh-hh
Confidence 368999999999999988853 346665554 4445555443 256788888888888889999999888 68
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
+|..++..++.++.++|+|||.++++.+..
T Consensus 109 ~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 109 QWCDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred hhccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 999999999999999999999999987643
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-11 Score=119.56 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=75.2
Q ss_pred CeEEEECCCCchHHHHHhc------CCCccccCChhhhhHHHHHHHHHc-CCCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 217 RNVLDVGCGVASFGAYLLS------HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~------~~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
.+|||||||+|.++..++. ..++++|+++.++..+..+..... ..++.+..+|...++++ .+|+|+++. +
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~-~ 131 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF-T 131 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec-c
Confidence 5799999999999888764 347788777766655543222111 23578888898888865 489999887 5
Q ss_pred cccccc--hHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 290 IDWLQR--DGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 290 l~~~~d--~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
+||..+ ...+++++.|+|||||.|+++++.
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 777753 467999999999999999998753
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=122.45 Aligned_cols=100 Identities=18% Similarity=0.254 Sum_probs=76.4
Q ss_pred CCeEEEECCCCchHHHHHhc------CCCccccCChhhhhHHHHHHHHHc-CCCeEEEeecCCCCCCCCCCceEEEeccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS------HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~------~~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
..+|||||||+|..+..++. ..++++|+++.++..+..+.+... ..++.+..+++..++++ .+|+|+++.
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~- 133 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF- 133 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh-
Confidence 35899999999999887764 367888887777766654443322 12578888888888765 499999877
Q ss_pred ccccccch--HHHHHHHHhhCCCCeEEEEEeC
Q 010274 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 289 ~l~~~~d~--~~lL~el~RvLrPGG~lvis~P 318 (514)
++|++++. ..+++++.++|||||.|++++.
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 57777543 5699999999999999999874
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-12 Score=110.93 Aligned_cols=92 Identities=28% Similarity=0.525 Sum_probs=68.7
Q ss_pred EEEECCCCchHHHHHhc-------CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 219 VLDVGCGVASFGAYLLS-------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 219 VLDIGCGtG~~a~~La~-------~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
|||+|||+|..+..++. ..++++|+++.++..+.. ...+.+.++.+.+.|..++++.+++||+|+|+.++++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~-~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKK-RFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHH-HSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHH-hchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 79999999999998874 356677666665544442 2222457889999999999988889999999776677
Q ss_pred cccch--HHHHHHHHhhCCCCe
Q 010274 292 WLQRD--GILLLELDRLLRPGG 311 (514)
Q Consensus 292 ~~~d~--~~lL~el~RvLrPGG 311 (514)
|..+. ..+++++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 76543 669999999999998
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-11 Score=120.84 Aligned_cols=168 Identities=15% Similarity=0.241 Sum_probs=116.4
Q ss_pred ccceeccCceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChh
Q 010274 169 QHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPN 246 (514)
Q Consensus 169 q~Wv~~~g~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~ 246 (514)
-+|+...++...+-|.|.+|-...+++.+.+..--. ...+..+..++||||+|.|..+..|+.. +|.+.
T Consensus 52 L~~f~S~T~iNG~LgRG~MFvfS~~Q~~~LL~~~~~----~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aT----- 122 (265)
T PF05219_consen 52 LSWFMSKTDINGILGRGSMFVFSEEQFRKLLRISGF----SWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYAT----- 122 (265)
T ss_pred HHHHHhHHhHhhhhcCCcEEEecHHHHHHHhhhhcc----CCCCcccCCceEEecCCCcHHHHHHHhhcceEEee-----
Confidence 345555667778889999999999888776552211 1122335578999999999999999863 45555
Q ss_pred hhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEe--CC-----
Q 010274 247 DVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS--PE----- 319 (514)
Q Consensus 247 dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~--P~----- 319 (514)
++|..|+..-+++|..+ .+..++.-.+.+||+|.|.+ ++....+|..+|+++++.|+|+|+++++. |-
T Consensus 123 E~S~~Mr~rL~~kg~~v----l~~~~w~~~~~~fDvIscLN-vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE 197 (265)
T PF05219_consen 123 EASPPMRWRLSKKGFTV----LDIDDWQQTDFKFDVISCLN-VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVE 197 (265)
T ss_pred cCCHHHHHHHHhCCCeE----EehhhhhccCCceEEEeehh-hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEE
Confidence 55566667777888643 23333443456899999999 79999999999999999999999999754 21
Q ss_pred ----CCCCChhHH----HhH----HHHHHHHHhcCcEEEEEec
Q 010274 320 ----AYAHDPENR----RIW----NAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 320 ----~~~~~~e~~----~~~----~~l~~ll~~~Gf~~v~~~~ 350 (514)
...+..+.. ..| ..+.++++.+||+++.+..
T Consensus 198 ~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 198 FGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred cCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 011111111 123 3555889999999886543
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-11 Score=123.70 Aligned_cols=131 Identities=18% Similarity=0.361 Sum_probs=90.7
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
.+|||||||+|.++.+|+. ..|+++|+++.++..+. +.+...+.++.+...|....++ +++||+|++.. +++++.
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~-vl~~l~ 198 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTV-VLMFLN 198 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcc-hhhhCC
Confidence 4799999999999999984 46888888877776554 4455566777777777766655 57899999887 577764
Q ss_pred --chHHHHHHHHhhCCCCeEEEEEeCC---CCCCC-h-hHHHhHHHHHHHHHhcCcEEEEEecce
Q 010274 295 --RDGILLLELDRLLRPGGYFVYSSPE---AYAHD-P-ENRRIWNAMYDLLKSMCWKIVSKKDQT 352 (514)
Q Consensus 295 --d~~~lL~el~RvLrPGG~lvis~P~---~~~~~-~-e~~~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (514)
+...+++++.++|+|||++++..+. .+... + .....-.++.++++. |+++......
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~e~~ 261 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYNENV 261 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEeccc
Confidence 4467999999999999997764321 11000 0 001112466677764 8888775543
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-12 Score=109.85 Aligned_cols=93 Identities=26% Similarity=0.394 Sum_probs=56.2
Q ss_pred EEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC-C-CCCCceEEEecccccccc
Q 010274 220 LDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-Y-PSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 220 LDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp-~-~~~sFDlV~~s~~~l~~~ 293 (514)
||||||+|.++..++. ..++++|+++.++..+..+.................... . ..++||+|+++. ++||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~-vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASN-VLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE--TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhh-hHhhh
Confidence 7999999999988874 467899999888865554444433333333333333322 1 225999999887 79999
Q ss_pred cchHHHHHHHHhhCCCCeEE
Q 010274 294 QRDGILLLELDRLLRPGGYF 313 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~l 313 (514)
++...+++.+.++|||||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.6e-11 Score=113.55 Aligned_cols=128 Identities=23% Similarity=0.337 Sum_probs=91.5
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCC-CCCCCCceEEEecccccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELAHCSRCRIDWLQR 295 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~l-p~~~~sFDlV~~s~~~l~~~~d 295 (514)
.+|||+|||.|.+..+|.+.. .++..+.+++++.+..+.++|+++.-...+. .+ .|++++||.|+++. +++.+.+
T Consensus 15 srVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~-gL~~f~d~sFD~VIlsq-tLQ~~~~ 90 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVARGVSVIQGDLDE-GLADFPDQSFDYVILSQ-TLQAVRR 90 (193)
T ss_pred CEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHcCCCEEECCHHH-hHhhCCCCCccEEehHh-HHHhHhH
Confidence 589999999999999998531 2233344566677788889998754433332 34 48999999999999 7999999
Q ss_pred hHHHHHHHHhhCCCCeEEEEEeCCC-C----------------------CCChhHHH--hHHHHHHHHHhcCcEEEEEec
Q 010274 296 DGILLLELDRLLRPGGYFVYSSPEA-Y----------------------AHDPENRR--IWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 296 ~~~lL~el~RvLrPGG~lvis~P~~-~----------------------~~~~e~~~--~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
++.+|+|+.|+ |...+++.|+. + +++..+.+ ....++++.++.|+++++...
T Consensus 91 P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~ 167 (193)
T PF07021_consen 91 PDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVF 167 (193)
T ss_pred HHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEE
Confidence 99999999877 55778877743 1 11111221 235888999999998887554
Q ss_pred c
Q 010274 351 Q 351 (514)
Q Consensus 351 ~ 351 (514)
.
T Consensus 168 ~ 168 (193)
T PF07021_consen 168 L 168 (193)
T ss_pred E
Confidence 3
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.5e-11 Score=114.58 Aligned_cols=198 Identities=20% Similarity=0.249 Sum_probs=126.3
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
..++|.|+|||+|..+..|+++- -...+++.|.|.+|+..|+++.+++.|..+|+..+. ++..+|+++++. +++|++
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNA-vlqWlp 106 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANA-VLQWLP 106 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhh-hhhhcc
Confidence 45789999999999999998641 123344446666777888899999999999988886 457899999555 899999
Q ss_pred chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecceEEEeccCcc-hhhhccCCCCCC
Q 010274 295 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISN-SCYLKRVPGSRP 373 (514)
Q Consensus 295 d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~~~iw~Kp~~~-~c~~~r~~~~~P 373 (514)
+-..+|..+...|.|||.|.+..|+.+... ...-|.+.+++.-|...-... ..-++++-. ..|...-. |
T Consensus 107 dH~~ll~rL~~~L~Pgg~LAVQmPdN~dep-----sH~~mr~~A~~~p~~~~l~~~--~~~r~~v~s~a~Yy~lLa---~ 176 (257)
T COG4106 107 DHPELLPRLVSQLAPGGVLAVQMPDNLDEP-----SHRLMRETADEAPFAQELGGR--GLTRAPLPSPAAYYELLA---P 176 (257)
T ss_pred ccHHHHHHHHHhhCCCceEEEECCCccCch-----hHHHHHHHHhcCchhhhhCcc--ccccCCCCCHHHHHHHhC---c
Confidence 999999999999999999999998754211 122444555544443221111 011333321 22211111 1
Q ss_pred CCcCCCCCCchhhhhcccccccccccCcccc---cCCCCCCCCCCCCCCCCCccccCCChhhHhHhHhhHHHHHHHHHHH
Q 010274 374 PLCSSDDDPDVTWNVLMKACISPYSAKMHHE---KGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQ 450 (514)
Q Consensus 374 ~lC~~~~~~~~~wy~~L~~ci~~~~~~~~~~---~~~~~~~wp~rl~~~~~~~~~~g~~~~~~~~d~~~W~~~v~~y~~~ 450 (514)
--|+- |.=.+.+|..| ++...+. +|.++.||=++|. .+.|+.-.+.|...
T Consensus 177 ~~~rv-DiW~T~Y~h~l-------~~a~aIvdWvkgTgLrP~L~~L~-------------------e~~~~~FL~~Y~~~ 229 (257)
T COG4106 177 LACRV-DIWHTTYYHQL-------PGADAIVDWVKGTGLRPYLDRLD-------------------EEERQRFLDRYLAL 229 (257)
T ss_pred cccee-eeeeeeccccC-------CCccchhhheeccccceeccccC-------------------HHHHHHHHHHHHHH
Confidence 12322 22234445433 3332221 5777888888885 36677777888766
Q ss_pred hc
Q 010274 451 MK 452 (514)
Q Consensus 451 ~~ 452 (514)
+.
T Consensus 230 l~ 231 (257)
T COG4106 230 LA 231 (257)
T ss_pred HH
Confidence 64
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.9e-11 Score=116.01 Aligned_cols=122 Identities=17% Similarity=0.160 Sum_probs=88.9
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecC-CCCC--CCCCCceEEEeccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLP--YPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~-~~lp--~~~~sFDlV~~s~~ 288 (514)
..+|||||||+|.++..++. ..++++|+++.++..+..+.......++.+.++|+ ..++ +++++||+|++.+.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP 120 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence 35799999999999998874 36888888887776665433332224678888887 6666 77789999998653
Q ss_pred cccccc--------chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 289 RIDWLQ--------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 289 ~l~~~~--------d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
.+|.. ....+++++.++|||||.|+++++.. .....+.+.+++.||...
T Consensus 121 -~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~--------~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 121 -DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE--------GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH--------HHHHHHHHHHHhCccccc
Confidence 33322 13679999999999999999976432 224567788888888544
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.4e-11 Score=120.98 Aligned_cols=132 Identities=15% Similarity=0.293 Sum_probs=82.6
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
+.+|||||||.|.++.++++. .|+|++++......+. +.+++.|. .+.+...|..+++. +||.|++.. ++
T Consensus 63 G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~-~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~-~~ 137 (273)
T PF02353_consen 63 GDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYAR-ERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIE-MF 137 (273)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHH-HHHHCSTSSSTEEEEES-GGG------S-SEEEEES-EG
T ss_pred CCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHH-HHHHhcCCCCceEEEEeeccccCC---CCCEEEEEe-ch
Confidence 468999999999999999954 5666666554443333 33344454 36777777776653 899999887 68
Q ss_pred ccc--cchHHHHHHHHhhCCCCeEEEEEe---CCC----CCCCh-hHH----------HhHHHHHHHHHhcCcEEEEEec
Q 010274 291 DWL--QRDGILLLELDRLLRPGGYFVYSS---PEA----YAHDP-ENR----------RIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 291 ~~~--~d~~~lL~el~RvLrPGG~lvis~---P~~----~~~~~-e~~----------~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+|+ .+...+++++.++|||||.+++.. +.. ..... .-. ....++...+++.||++...++
T Consensus 138 Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~~~ 217 (273)
T PF02353_consen 138 EHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDVEN 217 (273)
T ss_dssp GGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EEEEEEE
T ss_pred hhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEEEE
Confidence 888 455789999999999999999643 111 00000 001 1124677788899999888776
Q ss_pred ce
Q 010274 351 QT 352 (514)
Q Consensus 351 ~~ 352 (514)
..
T Consensus 218 ~~ 219 (273)
T PF02353_consen 218 LG 219 (273)
T ss_dssp -H
T ss_pred cC
Confidence 54
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.9e-11 Score=111.45 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=84.7
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||||||+|.++..++. ..|+++|.++.++..+. +.+++.+. ++.+..+|+..++ .+++||+|+|.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~-~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--~ 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLR-EVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--L 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh--h
Confidence 35899999999998888762 46889998887765554 33334444 5788888887764 357899998653 3
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
.+...+++.+.++|+|||.+++...... ......+.+-+...|++.++....
T Consensus 119 ---~~~~~~~~~~~~~LkpgG~lvi~~~~~~------~~~~~~~~e~~~~~~~~~~~~~~~ 170 (181)
T TIGR00138 119 ---ASLNVLLELTLNLLKVGGYFLAYKGKKY------LDEIEEAKRKCQVLGVEPLEVPPL 170 (181)
T ss_pred ---hCHHHHHHHHHHhcCCCCEEEEEcCCCc------HHHHHHHHHhhhhcCceEeecccc
Confidence 3445688999999999999998653221 112233334444478887765544
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-11 Score=122.13 Aligned_cols=98 Identities=18% Similarity=0.252 Sum_probs=71.2
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcC---CC----eEEEeecCCCCCCCCCCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERG---IP----STLGVLGTKRLPYPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg---~~----~~~~~~d~~~lp~~~~sFDlV~~s 286 (514)
+++|||+|||+|.++..|+. +.|+|+|++..++..+... +.... .+ +.+...+.+.+. +.||.|+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 36799999999999999994 5677776665555444322 11111 11 223333344333 459999999
Q ss_pred ccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 287 ~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
. +++|+.++..++..+.++|||||.+++++-
T Consensus 166 e-vleHV~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 166 E-VLEHVKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred H-HHHHHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 9 799999999999999999999999999873
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-10 Score=111.50 Aligned_cols=97 Identities=21% Similarity=0.332 Sum_probs=76.1
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhhhhHHHHHHHHHc---CCCeEEEeecCCCCCCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-----~V~gvdis~~dis~a~~~~A~~r---g~~~~~~~~d~~~lp~~~~sFDlV~~s~ 287 (514)
..+|||+|||+|.++..++.. .++++|+++..+ +.++++ ..++.+..+|+.++++++++||+|+++.
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~-----~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~ 114 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEML-----EVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAF 114 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHH-----HHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEee
Confidence 468999999999999888742 456666655443 444433 2356788888888888778999999887
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
.+++..+...+++++.++|+|||++++...
T Consensus 115 -~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 115 -GLRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred -eeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 578888999999999999999999998653
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-11 Score=118.66 Aligned_cols=134 Identities=26% Similarity=0.325 Sum_probs=98.4
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC-CC-CCCCCceEEEeccccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LP-YPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~-lp-~~~~sFDlV~~s~~~l~~ 292 (514)
..+++||+|||||..+..|... +-++.+.|+|++|+..|.+++.--.+.++++.. ++ ..++.||+|++.. ++.|
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaD-Vl~Y 200 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAAD-VLPY 200 (287)
T ss_pred ccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhh-HHHh
Confidence 3689999999999999998753 334444467788889999998755555555432 22 4467899999776 7999
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeCCC--CC--CChhHH---HhHHHHHHHHHhcCcEEEEEecce
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSPEA--YA--HDPENR---RIWNAMYDLLKSMCWKIVSKKDQT 352 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P~~--~~--~~~e~~---~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (514)
+.+.+.++.-+...|+|||.|.||.-.. +. ...... +.-.-+..+++..||+++..++.+
T Consensus 201 lG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 201 LGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred hcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence 9999999999999999999999987421 11 111111 112467899999999999887754
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-10 Score=111.06 Aligned_cols=100 Identities=19% Similarity=0.315 Sum_probs=77.0
Q ss_pred CeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHc-CCCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
.+|||+|||+|.++..++. ..++++|+++..+..+..+..... ..++.+...|...++++.++||+|+++. .+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~-~l 131 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF-GL 131 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec-cc
Confidence 5899999999999988873 456777776655544443222211 2356778888888887778999999887 57
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
++..+...++.++.++|+|||.+++.+
T Consensus 132 ~~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 132 RNVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 888889999999999999999998865
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.1e-11 Score=112.10 Aligned_cols=100 Identities=21% Similarity=0.341 Sum_probs=81.5
Q ss_pred eEEEECCCCchHHHHHh---cCCCccccCChhhhhHHHHHHHHHcCCCeE-EEeecCCCCC-CCCCCceEEEeccccccc
Q 010274 218 NVLDVGCGVASFGAYLL---SHDIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKRLP-YPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La---~~~V~gvdis~~dis~a~~~~A~~rg~~~~-~~~~d~~~lp-~~~~sFDlV~~s~~~l~~ 292 (514)
.||+||||||..-.+.. ...|+++|-++.+-+-+...+++.+..++. |++++.+++| ++++++|.|+|.. ++--
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl-vLCS 157 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL-VLCS 157 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE-EEec
Confidence 58999999998766655 346788877777666555555555566666 8899999998 8899999999998 5777
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
+.++...|+++.|+|||||++++...
T Consensus 158 ve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 158 VEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 89999999999999999999998653
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.8e-10 Score=113.67 Aligned_cols=160 Identities=14% Similarity=0.273 Sum_probs=101.9
Q ss_pred eeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHH
Q 010274 178 KINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQ 254 (514)
Q Consensus 178 ~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~ 254 (514)
...|++...........-.+.+.+.+.+. ++.+|||||||-|.++.++++ .+|+|+++|......+. +
T Consensus 43 cayf~~~~~tL~eAQ~~k~~~~~~kl~L~--------~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~-~ 113 (283)
T COG2230 43 CAYFEDPDMTLEEAQRAKLDLILEKLGLK--------PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAE-K 113 (283)
T ss_pred eEEeCCCCCChHHHHHHHHHHHHHhcCCC--------CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHH-H
Confidence 34555554444444444445555555543 347899999999999999995 45677777666555444 3
Q ss_pred HHHHcCCC--eEEEeecCCCCCCCCCCceEEEecccccccccc--hHHHHHHHHhhCCCCeEEEEEe---CCCCC-CChh
Q 010274 255 FALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSS---PEAYA-HDPE 326 (514)
Q Consensus 255 ~A~~rg~~--~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d--~~~lL~el~RvLrPGG~lvis~---P~~~~-~~~e 326 (514)
.++++|.. +.+...|...+. +.||-|++.. +++|+.. ...++..+.++|+|||.+++.+ +.... ....
T Consensus 114 r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvg-mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~ 189 (283)
T COG2230 114 RIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVG-MFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPD 189 (283)
T ss_pred HHHHcCCCcccEEEeccccccc---cccceeeehh-hHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchH
Confidence 34445654 566655555544 4599999777 7888865 6889999999999999999754 22111 1111
Q ss_pred HH-H-h--------HHHHHHHHHhcCcEEEEEec
Q 010274 327 NR-R-I--------WNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 327 ~~-~-~--------~~~l~~ll~~~Gf~~v~~~~ 350 (514)
-. + + ...+....++.||.+...+.
T Consensus 190 ~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~ 223 (283)
T COG2230 190 FIDKYIFPGGELPSISEILELASEAGFVVLDVES 223 (283)
T ss_pred HHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhh
Confidence 11 1 1 13566667888887765443
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.5e-11 Score=128.05 Aligned_cols=127 Identities=24% Similarity=0.480 Sum_probs=98.5
Q ss_pred CCCCCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 213 GGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 213 ~~~~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
.++.|.|+|+.+|.|.|+++|.+..|+.|.+.|. .....+....+||+-..++.. .+.++.-+++||+||++.. +..
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLIG~yhDW-CE~fsTYPRTYDLlHA~~l-fs~ 439 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLIGVYHDW-CEAFSTYPRTYDLLHADGL-FSL 439 (506)
T ss_pred ccceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccchhccch-hhccCCCCcchhheehhhh-hhh
Confidence 3568899999999999999999999999999998 556666888888864444332 4556655699999998763 433
Q ss_pred cc---chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 293 LQ---RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 293 ~~---d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
.. +...+|.|++|+|||||+++|.+ ......+++.+++++.|+......+
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD---------~~~vl~~v~~i~~~lrW~~~~~d~e 492 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRD---------TVDVLEKVKKIAKSLRWEVRIHDTE 492 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEec---------cHHHHHHHHHHHHhCcceEEEEecC
Confidence 22 34679999999999999999954 2344678999999999987765443
|
; GO: 0008168 methyltransferase activity |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.5e-10 Score=110.22 Aligned_cols=131 Identities=18% Similarity=0.227 Sum_probs=88.7
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+|||||||+|.++..++. ..++|+|+++.++..+..+. ...+. ++.+.+.|...++ ++||+|++... ++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~-~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~-l~ 130 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRA-QGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV-LI 130 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-HhcCCCCceEEEECChhhCC---CCcCEEEEhhH-HH
Confidence 46899999999999999985 35777877776665554332 22232 5778888877765 68999998874 55
Q ss_pred ccc--chHHHHHHHHhhCCCCeEEEEEeCCCCC-----------CChh----HHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 292 WLQ--RDGILLLELDRLLRPGGYFVYSSPEAYA-----------HDPE----NRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 292 ~~~--d~~~lL~el~RvLrPGG~lvis~P~~~~-----------~~~e----~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
|.+ +...++.++.+++++++++.+.....+. .... ....-+++.++++++||+++..+..
T Consensus 131 ~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~ 207 (219)
T TIGR02021 131 HYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLV 207 (219)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecc
Confidence 543 3467899999999988777664321110 0000 0001257889999999999877644
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-10 Score=111.47 Aligned_cols=137 Identities=20% Similarity=0.384 Sum_probs=92.6
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
+.++||+|||.|..+.+|+. ..|+++|+++..+.... +.|.+.++++...+.|+....++ +.||+|++.. +++|+
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~-~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~-v~~fL 107 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQ-RLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTV-VFMFL 107 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHH-HHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEES-SGGGS
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHhhcCceeEEEEecchhcccc-CCcCEEEEEE-EeccC
Confidence 35899999999999999995 57899999998876654 67888889999999998777775 6899999765 56666
Q ss_pred cch--HHHHHHHHhhCCCCeEEEEEeC---CCCCCChhHHHhH--HHHHHHHHhcCcEEEEEecceEEEec
Q 010274 294 QRD--GILLLELDRLLRPGGYFVYSSP---EAYAHDPENRRIW--NAMYDLLKSMCWKIVSKKDQTVIWAK 357 (514)
Q Consensus 294 ~d~--~~lL~el~RvLrPGG~lvis~P---~~~~~~~e~~~~~--~~l~~ll~~~Gf~~v~~~~~~~iw~K 357 (514)
... ..++..+...++|||++++.+. +.+.......-.+ .++..... +|+++..+....--+|
T Consensus 108 ~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~E~~g~~h~ 176 (192)
T PF03848_consen 108 QRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKYNEDVGELHR 176 (192)
T ss_dssp -GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEEEccccceee
Confidence 544 5699999999999999887431 1111100000011 24555544 6999987665544444
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.3e-10 Score=109.41 Aligned_cols=134 Identities=16% Similarity=0.319 Sum_probs=94.4
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCC-CCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYP-SRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~-~~sFDlV~~s~~~l~ 291 (514)
..+|||+|||+|.++..++. ..++++|+++..+..+..+.. ..+. ++.+...+....+.. .++||+|++.. .++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~-~l~ 123 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAK-KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCME-VLE 123 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhcCCCCCccEEEehh-HHH
Confidence 46899999999999988874 356777776665544443222 2334 467777776666543 37899999887 688
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCCCCCC---------------hh---HHH---hHHHHHHHHHhcCcEEEEEec
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD---------------PE---NRR---IWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~---------------~e---~~~---~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+..++..++.++.++|+|||.++++.+...... .. ... .-.++.++++++||++++.+.
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~~ 203 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVKG 203 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeeee
Confidence 899999999999999999999998775321000 00 000 124688899999999988765
Q ss_pred c
Q 010274 351 Q 351 (514)
Q Consensus 351 ~ 351 (514)
.
T Consensus 204 ~ 204 (224)
T TIGR01983 204 L 204 (224)
T ss_pred E
Confidence 4
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-10 Score=116.75 Aligned_cols=97 Identities=18% Similarity=0.299 Sum_probs=70.4
Q ss_pred CCeEEEECCCCch----HHHHHhc---------CCCccccCChhhhhHHHHHHHHHcC----------------------
Q 010274 216 IRNVLDVGCGVAS----FGAYLLS---------HDIIAMSLAPNDVHENQIQFALERG---------------------- 260 (514)
Q Consensus 216 ~~~VLDIGCGtG~----~a~~La~---------~~V~gvdis~~dis~a~~~~A~~rg---------------------- 260 (514)
..+|+|+|||+|. ++..|++ ..|+|+|+++. +++.|++.-
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~-----~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~ 174 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLK-----ALEKARAGIYPERELEDLPKALLARYFSRVE 174 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHH-----HHHHHHcCCCCHHHHhcCCHHHHhhhEEeCC
Confidence 4689999999995 4544443 23555555554 445554421
Q ss_pred ----------CCeEEEeecCCCCCCCCCCceEEEecccccccccch--HHHHHHHHhhCCCCeEEEEEeC
Q 010274 261 ----------IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 261 ----------~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P 318 (514)
..+.|.+.|+...++++++||+|+|.+ +++|.+++ ..++++++++|+|||+|++...
T Consensus 175 ~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crn-vl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 175 DKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRN-VLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred CeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEech-hHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 146788888888887778999999988 57777543 5799999999999999999653
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.2e-10 Score=113.74 Aligned_cols=133 Identities=23% Similarity=0.243 Sum_probs=93.4
Q ss_pred CCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHc-CCCe--EEEeecCCCCCCCCCCceEEEeccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER-GIPS--TLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~r-g~~~--~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
++++|||||||.|.++..|++ ..|+|+|-+..-. .+-+++++- +... ...-..++.+|. .++||+|+|..
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~--~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MG- 190 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFY--LQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMG- 190 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHH--HHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEee-
Confidence 347999999999999998885 3578887765433 333343332 2222 233246788887 68999999887
Q ss_pred ccccccchHHHHHHHHhhCCCCeEEEEEeC------------C-CCCCChhH--HHhHHHHHHHHHhcCcEEEEEecc
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSP------------E-AYAHDPEN--RRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~lvis~P------------~-~~~~~~e~--~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
++.|..++-..|.++...|+|||.+++.+- . .|...... ...-..+...++++||+.++.-+.
T Consensus 191 VLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 191 VLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred ehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecC
Confidence 788899999999999999999999997441 1 11111100 011258899999999998876654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.3e-10 Score=108.02 Aligned_cols=133 Identities=15% Similarity=0.312 Sum_probs=92.8
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC-CCCCCceEEEeccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-YPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp-~~~~sFDlV~~s~~~l~~ 292 (514)
..+|||||||+|.++..++.. .++++|+++..+..+.... ...+..+.+...+....+ ..+++||+|+++. .+++
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~-~l~~ 126 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHA-LESGLKIDYRQTTAEELAAEHPGQFDVVTCME-MLEH 126 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHH-HHcCCceEEEecCHHHhhhhcCCCccEEEEhh-Hhhc
Confidence 457999999999999888753 5677777665554443222 222445666666665554 3457899999988 5888
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCCh------------------hHHH---hHHHHHHHHHhcCcEEEEEec
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDP------------------ENRR---IWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~------------------e~~~---~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
..+...+++.+.++|+|||.++++.+....... .... .-.++.+++++.||+++....
T Consensus 127 ~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 127 VPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDITG 205 (233)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeeee
Confidence 889999999999999999999998753211000 0000 113688999999999987653
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-10 Score=108.83 Aligned_cols=122 Identities=15% Similarity=0.216 Sum_probs=85.0
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC---CCCCCceEEEecccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---YPSRSFELAHCSRCR 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp---~~~~sFDlV~~s~~~ 289 (514)
.+|||||||+|.++..++. .+++++|++...+..+..+.......++.++.+|+..++ +++++||.|++...
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p- 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP- 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC-
Confidence 4799999999999998884 468889888877766554333332236788888876543 45678999997653
Q ss_pred cccccch--------HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcC-cEEEE
Q 010274 290 IDWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVS 347 (514)
Q Consensus 290 l~~~~d~--------~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~G-f~~v~ 347 (514)
.+|.... ..++.++.++|||||.|++.+... ..+..+.+.+...+ |+.+.
T Consensus 97 dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~--------~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 97 DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE--------PLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH--------HHHHHHHHHHHhCCCeEecc
Confidence 4443321 469999999999999999976432 12345556666555 76553
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=9e-10 Score=113.56 Aligned_cols=129 Identities=18% Similarity=0.225 Sum_probs=80.3
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHc-----CCCeEEEeecCCCCCCCCCCceEEEeccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~r-----g~~~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
..+|||||||+|.++..|+. ..|+++|+++.++..+..+..... ...+.+...|...+ +++||+|+|...
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~v 221 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDV 221 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCE
Confidence 36899999999999999985 357788777777665553322210 22456666665543 478999999885
Q ss_pred ccccccch--HHHHHHHHhhCCCCeEEEEEeCCCCCCCh--h----------HHH----hHHHHHHHHHhcCcEEEEEe
Q 010274 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDP--E----------NRR----IWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 289 ~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~~~~--e----------~~~----~~~~l~~ll~~~Gf~~v~~~ 349 (514)
++|.++. ..+++.+.+ +.+||.++...|..+.+.. . ... .-++++++++++||++...+
T Consensus 222 -L~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 222 -LIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred -EEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 5555443 345666665 4566665544443221100 0 000 12578999999999987544
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-10 Score=123.50 Aligned_cols=130 Identities=16% Similarity=0.218 Sum_probs=91.3
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCC--CCCCCCCCceEEEeccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK--RLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~--~lp~~~~sFDlV~~s~~~l~~ 292 (514)
.+|||||||+|.++..|+. ..|+++|+++.++..+.. ......++.+...|+. .+++++++||+|+|.. .++|
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~-~l~~ 115 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNISDGSVDLIFSNW-LLMY 115 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCCCCCEEEEehhh-hHHh
Confidence 5899999999999999985 367888877766643321 1111235677777764 5678888999999888 5777
Q ss_pred ccch--HHHHHHHHhhCCCCeEEEEEeCCCCCC-------ChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 293 LQRD--GILLLELDRLLRPGGYFVYSSPEAYAH-------DPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 293 ~~d~--~~lL~el~RvLrPGG~lvis~P~~~~~-------~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
+.+. ..++.++.|+|||||++++.+...... ++........+.+++.++||......
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 181 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGN 181 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCC
Confidence 7663 679999999999999999876432111 11121223466788999998766443
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.2e-10 Score=109.55 Aligned_cols=91 Identities=15% Similarity=0.163 Sum_probs=67.9
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC--------CCCCCceE
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp--------~~~~sFDl 282 (514)
..+|||||||+|.++..+++ ..|+++|+++. ....++.+.++|+...+ +.+++||+
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~ 120 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQV 120 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence 35899999999999988874 35888888761 11235678888877643 56789999
Q ss_pred EEecccccccccch-----------HHHHHHHHhhCCCCeEEEEEeC
Q 010274 283 AHCSRCRIDWLQRD-----------GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 283 V~~s~~~l~~~~d~-----------~~lL~el~RvLrPGG~lvis~P 318 (514)
|+|+. ..++..++ ..+|.++.++|||||.|++...
T Consensus 121 V~S~~-~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 121 VMSDM-APNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred EecCC-CCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99866 35444321 4589999999999999999663
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=107.95 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=87.1
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCC----CCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL----PYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~l----p~~~~sFDlV~~s~ 287 (514)
..+|||+|||+|.++..|+.. .|+++|+++.++.... +.++++ .++.+..+|.... ++. ++||+|++..
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~ 149 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EKVDVIYQDV 149 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEEECC
Confidence 358999999999999999853 5888888887765444 344443 4567777776531 223 5699998543
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEeCCC-CCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA-YAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~-~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
. . ......++.++.|+|||||+++++.+.. ..........+++..+.++++||+.+...+.
T Consensus 150 ~-~--p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 150 A-Q--PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred C-C--hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence 1 1 1122456899999999999999965421 0011111233456679999999999877664
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-09 Score=101.46 Aligned_cols=121 Identities=12% Similarity=0.013 Sum_probs=84.7
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+|||||||+|.++..++. ..|+++|+++..+..+..+..+....++.+...+.. .+++ ++||+|++... .+
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~~-~~~D~v~~~~~-~~ 108 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IELP-GKADAIFIGGS-GG 108 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhcC-cCCCEEEECCC-cc
Confidence 35899999999999998874 368889888877666553333322234666666653 3333 58999997652 32
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
....++.++.++|+|||++++..... ....++.+++++.||+.+....
T Consensus 109 ---~~~~~l~~~~~~Lk~gG~lv~~~~~~--------~~~~~~~~~l~~~g~~~~~~~~ 156 (187)
T PRK08287 109 ---NLTAIIDWSLAHLHPGGRLVLTFILL--------ENLHSALAHLEKCGVSELDCVQ 156 (187)
T ss_pred ---CHHHHHHHHHHhcCCCeEEEEEEecH--------hhHHHHHHHHHHCCCCcceEEE
Confidence 34568999999999999999864321 2245777899999997665443
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.8e-10 Score=117.67 Aligned_cols=101 Identities=16% Similarity=0.183 Sum_probs=74.1
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
.+|||+|||+|.++..++. ..|+++|+++.++..+..+. +..+....+...|.... .+++||+|+|+.. +|+
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl-~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPP-FH~ 273 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATL-AANGLEGEVFASNVFSD--IKGRFDMIISNPP-FHD 273 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCEEEEcccccc--cCCCccEEEECCC-ccC
Confidence 3799999999999999884 25788888887776666433 33455556666665332 2578999999873 544
Q ss_pred c-----cchHHHHHHHHhhCCCCeEEEEEeCCCC
Q 010274 293 L-----QRDGILLLELDRLLRPGGYFVYSSPEAY 321 (514)
Q Consensus 293 ~-----~d~~~lL~el~RvLrPGG~lvis~P~~~ 321 (514)
. ...+.++.++.+.|||||.|+++.....
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l 307 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL 307 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCC
Confidence 2 2236799999999999999999886554
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=107.28 Aligned_cols=94 Identities=19% Similarity=0.268 Sum_probs=67.6
Q ss_pred CCCeEEEECCCCchHHHHHhc--------CCCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCCCCCCCCceEEE
Q 010274 215 NIRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAH 284 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~--------~~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~lp~~~~sFDlV~ 284 (514)
+..+|||||||+|.++..|+. ..++++|+++ .+++.|+++. .++.+.+.+...+++++++||+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~-----~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP-----RAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH-----HHHHHHHhccccCCCeEEEEecccccccCCCccEEE
Confidence 346899999999999888763 1456665554 4555555542 235566666666777778999999
Q ss_pred ecccccccccch--HHHHHHHHhhCCCCeEEEEE
Q 010274 285 CSRCRIDWLQRD--GILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 285 ~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis 316 (514)
|+. ++||+++. ..+++++.|+++ |.+++.
T Consensus 135 ~~~-~lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 135 SNH-FLHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred ECC-eeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 998 58888775 469999999998 444443
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=102.93 Aligned_cols=122 Identities=16% Similarity=0.131 Sum_probs=86.6
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
.+|||+|||+|.++..++.. .|+++|+++..+..+..+.. ..+..+.+..+|....+ .++||+|+++.. +++..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p-~~~~~ 96 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAK-LNNVGLDVVMTDLFKGV--RGKFDVILFNPP-YLPLE 96 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCceEEEEccccccc--CCcccEEEECCC-CCCCc
Confidence 57999999999999998853 47888888777665553333 34556777777765543 358999998753 32222
Q ss_pred c---------------------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 295 R---------------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 295 d---------------------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+ ...++.++.++|+|||.+++..+... .-.++.+++++.||.......
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--------~~~~~~~~l~~~gf~~~~~~~ 165 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--------GEPDTFDKLDERGFRYEIVAE 165 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--------ChHHHHHHHHhCCCeEEEEEE
Confidence 1 24589999999999999999764321 124667888999998776544
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-10 Score=125.58 Aligned_cols=101 Identities=16% Similarity=0.167 Sum_probs=76.0
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC--CCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp--~~~~sFDlV~~s~~~ 289 (514)
..+|||||||+|.++..++. ..++|+|+++.++..+..+ +...+.++.+..+|...++ +++++||+|+++..
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Arar-l~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v- 496 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKK-KQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI- 496 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-hhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH-
Confidence 35899999999999888774 4677887777666554422 2223456677788887787 78899999998874
Q ss_pred cccc-------------cchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 290 IDWL-------------QRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 290 l~~~-------------~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
+|+. .+...+|+++.++|||||.+++.+.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 5543 2446799999999999999999864
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.1e-10 Score=107.56 Aligned_cols=97 Identities=14% Similarity=0.070 Sum_probs=70.0
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc-
Q 010274 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ- 294 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~- 294 (514)
..+|||||||+|.++..|+... .+.++.+.|+++.+++.|+++..++.+.++++.. |+++++||+|++.. +++|+.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~-vL~hl~p 120 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKG-VLIHINP 120 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECC-hhhhCCH
Confidence 3579999999999999887531 1233444455556667777655566777888777 88889999999887 566664
Q ss_pred -chHHHHHHHHhhCCCCeEEEEEe
Q 010274 295 -RDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 295 -d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+...+++++.|++ ++++++..
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEE
Confidence 2367899999998 46777755
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-10 Score=107.86 Aligned_cols=100 Identities=18% Similarity=0.265 Sum_probs=70.5
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCC-eEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~-~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
.+|||+|||+|.++..++.. .|+++|+++..+..+..+. ...+.. +.+...|.... .++++||+|+|+-- ++
T Consensus 33 ~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~-~~n~~~~v~~~~~d~~~~-~~~~~fD~Iv~NPP-~~ 109 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNA-ERNGLENVEVVQSDLFEA-LPDGKFDLIVSNPP-FH 109 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHH-HHTTCTTEEEEESSTTTT-CCTTCEEEEEE----SB
T ss_pred CeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH-HhcCcccccccccccccc-ccccceeEEEEccc-hh
Confidence 57999999999999999852 4888888887776665433 334444 77777775432 33689999998753 32
Q ss_pred cccc-----hHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 292 WLQR-----DGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 292 ~~~d-----~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
...+ ...++.+..+.|+|||.|++....
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 2222 366899999999999999876643
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.3e-09 Score=104.82 Aligned_cols=123 Identities=21% Similarity=0.306 Sum_probs=84.7
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEeccccc-
Q 010274 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI- 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~l- 290 (514)
.+|||+|||+|.++..++.. .++++|+++..+..+... +...+. ++.+..+|... ++++++||+|+|+.-.+
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~-~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKN-AARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCc
Confidence 47999999999999998853 678888887776655533 333344 47777777655 45668999999853111
Q ss_pred ----ccc--------------------cchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 291 ----DWL--------------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 291 ----~~~--------------------~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
+.. .....++.++.++|+|||.+++..... .-..+.+++++.||+.+
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~---------~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD---------QGEAVRALFEAAGFADV 237 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc---------HHHHHHHHHHhCCCCce
Confidence 000 011357899999999999999865321 12467888999999876
Q ss_pred EEec
Q 010274 347 SKKD 350 (514)
Q Consensus 347 ~~~~ 350 (514)
....
T Consensus 238 ~~~~ 241 (251)
T TIGR03534 238 ETRK 241 (251)
T ss_pred EEEe
Confidence 5543
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.1e-09 Score=111.60 Aligned_cols=122 Identities=20% Similarity=0.239 Sum_probs=89.0
Q ss_pred CCeEEEECCCCchHHHHHh--cCCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEeccc----
Q 010274 216 IRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRC---- 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La--~~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~---- 288 (514)
..+|||+|||+|.++..++ +..++|+|+++.++..+..+.. ..+. ++.+..+|+.++|+.+++||+|++..-
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~-~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~ 261 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLE-HYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRS 261 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHH-HhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCc
Confidence 3589999999999877665 4578899988887776654433 3333 357788999999988889999998521
Q ss_pred -ccc--cccc-hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 289 -RID--WLQR-DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 289 -~l~--~~~d-~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
... ...+ ...++.++.++|||||++++..|... .+.++++.+|| ++....
T Consensus 262 ~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----------~~~~~~~~~g~-i~~~~~ 315 (329)
T TIGR01177 262 TTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----------DLESLAEDAFR-VVKRFE 315 (329)
T ss_pred ccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----------CHHHHHhhcCc-chheee
Confidence 011 0111 36799999999999999999887542 44577999999 665444
|
This family is found exclusively in the Archaea. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-09 Score=109.81 Aligned_cols=122 Identities=19% Similarity=0.310 Sum_probs=85.6
Q ss_pred CCCeEEEECCCCchHHHHHh--cC-CCccccCChhhhhHHHHHHHHHcCCCe--EEEeecCCCCCCCC-CCceEEEeccc
Q 010274 215 NIRNVLDVGCGVASFGAYLL--SH-DIIAMSLAPNDVHENQIQFALERGIPS--TLGVLGTKRLPYPS-RSFELAHCSRC 288 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La--~~-~V~gvdis~~dis~a~~~~A~~rg~~~--~~~~~d~~~lp~~~-~sFDlV~~s~~ 288 (514)
++++|||+|||+|.++...+ ++ .+.|+|+++..+..++ +.++.++++. .....+. +..+. +.||+|+++-
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~-eNa~~N~v~~~~~~~~~~~--~~~~~~~~~DvIVANI- 237 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR-ENARLNGVELLVQAKGFLL--LEVPENGPFDVIVANI- 237 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHH-HHHHHcCCchhhhcccccc--hhhcccCcccEEEehh-
Confidence 45789999999999888876 33 5899999999887776 4555555552 2222222 22233 5899999775
Q ss_pred ccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
+- .-...+..++.+.|||||++++|.-- . ..-+.+.+.+++.||+++.....
T Consensus 238 -LA--~vl~~La~~~~~~lkpgg~lIlSGIl-----~---~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 238 -LA--EVLVELAPDIKRLLKPGGRLILSGIL-----E---DQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred -hH--HHHHHHHHHHHHHcCCCceEEEEeeh-----H---hHHHHHHHHHHhCCCeEeEEEec
Confidence 21 12257899999999999999998721 1 12356778888999999876554
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-09 Score=108.99 Aligned_cols=117 Identities=16% Similarity=0.273 Sum_probs=79.6
Q ss_pred CeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCC--eEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~--~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
.+|||+|||+|.++..++. ..|+++|+++.++..+..+.. ..+.. +.+...+ ..+..+++||+|+++. ..+
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~-~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~-~~~ 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAE-LNQVSDRLQVKLIY--LEQPIEGKADVIVANI-LAE 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHH-HcCCCcceEEEecc--cccccCCCceEEEEec-CHH
Confidence 6899999999999888763 368899888887766654433 33333 2333332 2334457899999865 222
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
....++.++.++|||||+++++.... ....++.+.+++. |+++...
T Consensus 237 ---~l~~ll~~~~~~LkpgG~li~sgi~~--------~~~~~v~~~~~~~-f~~~~~~ 282 (288)
T TIGR00406 237 ---VIKELYPQFSRLVKPGGWLILSGILE--------TQAQSVCDAYEQG-FTVVEIR 282 (288)
T ss_pred ---HHHHHHHHHHHHcCCCcEEEEEeCcH--------hHHHHHHHHHHcc-CceeeEe
Confidence 23568999999999999999987421 1235667777776 8776543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.9e-09 Score=93.08 Aligned_cols=97 Identities=15% Similarity=0.061 Sum_probs=69.6
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC-CCCCCCCceEEEecccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~-lp~~~~sFDlV~~s~~~l~ 291 (514)
.+|||+|||+|.++..++. ..++++|+++..+..+..+.......++.+...+... ++....+||.|++... .+
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~-~~ 99 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS-GG 99 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc-ch
Confidence 5899999999999999884 3578888887766655533333322356666666544 3333468999997653 22
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
....+++++.++|+|||+|++..
T Consensus 100 ---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 100 ---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 23579999999999999999864
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.8e-09 Score=105.41 Aligned_cols=116 Identities=19% Similarity=0.266 Sum_probs=78.5
Q ss_pred CCeEEEECCCCchHHHHHhc--C-CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--H-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~-~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
..+|||+|||+|.++..++. . .|+++|+++..+..+..+. ...+....+. ++..+.+||+|+++.. .
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~-~~~~~~~~~~------~~~~~~~fD~Vvani~-~-- 189 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENA-ELNGVELNVY------LPQGDLKADVIVANIL-A-- 189 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHcCCCceEE------EccCCCCcCEEEEcCc-H--
Confidence 36899999999998887764 2 4788888887776555333 3333321111 1112237999997642 2
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
.....++.++.++|||||+++++.... ...+.+...+++.||+++....
T Consensus 190 -~~~~~l~~~~~~~LkpgG~lilsgi~~--------~~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 190 -NPLLELAPDLARLLKPGGRLILSGILE--------EQADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred -HHHHHHHHHHHHhcCCCcEEEEEECcH--------hhHHHHHHHHHHCCCEEEEEEE
Confidence 223568999999999999999986422 1235678889999999876544
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=114.69 Aligned_cols=129 Identities=12% Similarity=0.169 Sum_probs=80.7
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcC---CCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg---~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
.+|||+|||+|.++..++. ..|+++|+++.++..+..+.+.... .++.+...|.... +++.+||+|+|+-.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP- 307 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP- 307 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC-
Confidence 4799999999999999874 3688888888777666544433221 1456666654322 33468999999753
Q ss_pred cccc---cc--hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEE
Q 010274 290 IDWL---QR--DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 290 l~~~---~d--~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~ 347 (514)
+|.. .+ ...++.++.++|+|||.|++.......+.....+.+...+.+.+..+|.+++
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg~~~~va~~~kf~vl~ 370 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNCTTIATNNKFVVLK 370 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcCCceEEccCCCEEEEE
Confidence 3322 11 2568999999999999999986443322222222222333334445555544
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.8e-10 Score=103.08 Aligned_cols=111 Identities=9% Similarity=0.017 Sum_probs=77.5
Q ss_pred cccCChhhhhHHHHHHHHHc---CCCeEEEeecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEE
Q 010274 240 AMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 240 gvdis~~dis~a~~~~A~~r---g~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis 316 (514)
|+|+++.++..+..+..... ..++.+.++|+.++|+++++||+|++++ +++++++...+|++++|+|||||.|++.
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~-~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY-GLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc-hhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 56666665544432221111 1257899999999999999999999888 6888899999999999999999999976
Q ss_pred eCCCC------------------------------CCChhHHH---hHHHHHHHHHhcCcEEEEEecc
Q 010274 317 SPEAY------------------------------AHDPENRR---IWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 317 ~P~~~------------------------------~~~~e~~~---~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
+.... .+..+... ..+++.++++++||..+.....
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~ 148 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEI 148 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEEC
Confidence 53210 01111111 1247889999999988765554
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-09 Score=102.58 Aligned_cols=123 Identities=20% Similarity=0.252 Sum_probs=84.0
Q ss_pred CeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC-C-CCCCCCceEEEecccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-L-PYPSRSFELAHCSRCRID 291 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~-l-p~~~~sFDlV~~s~~~l~ 291 (514)
.+|||||||+|.++..++.. .++++|+ ++.+++.+++++ +.+..+|+.. + ++++++||+|+|+. +++
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~-----s~~~i~~a~~~~--~~~~~~d~~~~l~~~~~~sfD~Vi~~~-~l~ 86 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGIEI-----DQDGVLACVARG--VNVIQGDLDEGLEAFPDKSFDYVILSQ-TLQ 86 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEEeC-----CHHHHHHHHHcC--CeEEEEEhhhcccccCCCCcCEEEEhh-HhH
Confidence 47999999999999988743 3355554 455556666554 4556666654 4 46778999999988 689
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCCC----------------------C-CC--hhHHHhHHHHHHHHHhcCcEEE
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAY----------------------A-HD--PENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~~----------------------~-~~--~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
|+.++..+++++.|++++ .+++.|..- . .. ........++.++++++||+++
T Consensus 87 ~~~d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~ 163 (194)
T TIGR02081 87 ATRNPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRIL 163 (194)
T ss_pred cCcCHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEE
Confidence 999999999999988764 344433210 0 00 0011134688999999999988
Q ss_pred EEec
Q 010274 347 SKKD 350 (514)
Q Consensus 347 ~~~~ 350 (514)
....
T Consensus 164 ~~~~ 167 (194)
T TIGR02081 164 DRAA 167 (194)
T ss_pred EEEE
Confidence 6554
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=104.62 Aligned_cols=98 Identities=23% Similarity=0.374 Sum_probs=69.5
Q ss_pred CCCCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHc---CCCeEEEeecCCCCCCCCCCceEEEeccc
Q 010274 214 GNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~r---g~~~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
...+++||+|||.|.++..|+.+ .++++|+++..+ +.|++| ..++.+.+.+.... .|+++||+|+++.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al-----~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SE- 114 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRAL-----ARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSE- 114 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHH-----HHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHH-----HHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEeh-
Confidence 44578999999999999999974 566776665544 555554 24678888877554 4678999999998
Q ss_pred ccccccch---HHHHHHHHhhCCCCeEEEEEeC
Q 010274 289 RIDWLQRD---GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 289 ~l~~~~d~---~~lL~el~RvLrPGG~lvis~P 318 (514)
+++|+.+. ..++..+...|+|||.|++.+.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 68888653 4689999999999999999763
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.8e-10 Score=107.64 Aligned_cols=99 Identities=17% Similarity=0.073 Sum_probs=72.2
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHH------------HcCCCeEEEeecCCCCCCC-CCCce
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFAL------------ERGIPSTLGVLGTKRLPYP-SRSFE 281 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~------------~rg~~~~~~~~d~~~lp~~-~~sFD 281 (514)
.+|||+|||.|..+.+|++ ..|+|+|+++..+..++.+... .++.++.+.++|...++.. .++||
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD 115 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVD 115 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcC
Confidence 5899999999999999995 4789998888877644321100 1234577888888777643 35799
Q ss_pred EEEecccccccccch--HHHHHHHHhhCCCCeEEEEE
Q 010274 282 LAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 282 lV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis 316 (514)
.|+-..+ +++++.. ..++..+.++|||||++++.
T Consensus 116 ~i~D~~~-~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 116 AVYDRAA-LIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred EEEechh-hccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 9997664 4455333 55999999999999986654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-09 Score=110.40 Aligned_cols=160 Identities=17% Similarity=0.175 Sum_probs=97.4
Q ss_pred eeecCCCCCCCCccH-HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHH
Q 010274 178 KINFPGGGTHFHDGA-DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQ 252 (514)
Q Consensus 178 ~~~Fpggg~~F~~ga-~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~ 252 (514)
.+.|-.....|.... +.-.+.+.+.++.. .. .+|||+|||.|.+++.|+. ..++-+|++...+..++
T Consensus 128 ~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~-------~~-~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar 199 (300)
T COG2813 128 ELTFKTLPGVFSRDKLDKGSRLLLETLPPD-------LG-GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESAR 199 (300)
T ss_pred ceEEEeCCCCCcCCCcChHHHHHHHhCCcc-------CC-CcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHH
Confidence 344444444554332 34445556655532 12 2799999999999999995 35677777777776666
Q ss_pred HHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccccch----HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHH
Q 010274 253 IQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEAYAHDPENR 328 (514)
Q Consensus 253 ~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~----~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~ 328 (514)
.+.+........+...+ .-.+..+ +||+|+|+--.+.-..-. .+++.+..+.|++||.|+|+......+.....
T Consensus 200 ~Nl~~N~~~~~~v~~s~-~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~ 277 (300)
T COG2813 200 KNLAANGVENTEVWASN-LYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLK 277 (300)
T ss_pred HhHHHcCCCccEEEEec-ccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHH
Confidence 44444433333333333 3334443 999999886422222222 37999999999999999998875544444333
Q ss_pred HhHHHHHHHHHhcCcEEEE
Q 010274 329 RIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 329 ~~~~~l~~ll~~~Gf~~v~ 347 (514)
+.|..++.+.+.-||++.+
T Consensus 278 ~~Fg~v~~la~~~gf~Vl~ 296 (300)
T COG2813 278 ELFGNVEVLAKNGGFKVLR 296 (300)
T ss_pred HhcCCEEEEEeCCCEEEEE
Confidence 4444455555566666554
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.3e-09 Score=108.80 Aligned_cols=127 Identities=20% Similarity=0.304 Sum_probs=84.1
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
..+|||||||+|.++..+++. +++++|+ +..+..+. +.+.+.+. ++.+..+|....+++ .+|+|++++.
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~~~~~- 224 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGVADRMRGIAVDIYKESYP--EADAVLFCRI- 224 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCccceEEEEecCccCCCCC--CCCEEEeEhh-
Confidence 468999999999999998853 4667775 33343332 33344443 467888887766665 3799998884
Q ss_pred cccccch--HHHHHHHHhhCCCCeEEEEEeCCCCC-CChh---HH---------------HhHHHHHHHHHhcCcEEEE
Q 010274 290 IDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYA-HDPE---NR---------------RIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 290 l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~-~~~e---~~---------------~~~~~l~~ll~~~Gf~~v~ 347 (514)
+|+..+. ..+|+++.++|||||++++.+..... .... .. ..-+++.++++++||+.+.
T Consensus 225 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~ 303 (306)
T TIGR02716 225 LYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVT 303 (306)
T ss_pred hhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeE
Confidence 5544332 56999999999999999987631110 0000 00 0014688899999998764
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.00 E-value=2e-09 Score=109.94 Aligned_cols=145 Identities=20% Similarity=0.306 Sum_probs=94.3
Q ss_pred CCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHh--c-CCCccccCChhhhhHHHHHHHHHcCC
Q 010274 185 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL--S-HDIIAMSLAPNDVHENQIQFALERGI 261 (514)
Q Consensus 185 g~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La--~-~~V~gvdis~~dis~a~~~~A~~rg~ 261 (514)
|..|..|...-.+...+++.... .++++|||||||+|.++...+ + ..|+++|+++..+..+. +.++.++.
T Consensus 137 g~AFGTG~H~TT~lcl~~l~~~~------~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~~~N~~ 209 (295)
T PF06325_consen 137 GMAFGTGHHPTTRLCLELLEKYV------KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENAELNGV 209 (295)
T ss_dssp TSSS-SSHCHHHHHHHHHHHHHS------STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHHHHTT-
T ss_pred CCcccCCCCHHHHHHHHHHHHhc------cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHHcCC
Confidence 45677777666666666555321 233689999999998877665 3 36999999998887776 44555565
Q ss_pred CeEEEeecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc
Q 010274 262 PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 341 (514)
Q Consensus 262 ~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~ 341 (514)
...+.+..... .....||+|+++-. . .-...++..+.++|+|||+|++|.--. ...+.+.+.+++
T Consensus 210 ~~~~~v~~~~~--~~~~~~dlvvANI~-~---~vL~~l~~~~~~~l~~~G~lIlSGIl~--------~~~~~v~~a~~~- 274 (295)
T PF06325_consen 210 EDRIEVSLSED--LVEGKFDLVVANIL-A---DVLLELAPDIASLLKPGGYLILSGILE--------EQEDEVIEAYKQ- 274 (295)
T ss_dssp TTCEEESCTSC--TCCS-EEEEEEES--H---HHHHHHHHHCHHHEEEEEEEEEEEEEG--------GGHHHHHHHHHT-
T ss_pred CeeEEEEEecc--cccccCCEEEECCC-H---HHHHHHHHHHHHhhCCCCEEEEccccH--------HHHHHHHHHHHC-
Confidence 54444332222 33489999997641 1 223568888999999999999987211 123567777777
Q ss_pred CcEEEEEecc
Q 010274 342 CWKIVSKKDQ 351 (514)
Q Consensus 342 Gf~~v~~~~~ 351 (514)
||+++.....
T Consensus 275 g~~~~~~~~~ 284 (295)
T PF06325_consen 275 GFELVEEREE 284 (295)
T ss_dssp TEEEEEEEEE
T ss_pred CCEEEEEEEE
Confidence 9998876553
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.3e-09 Score=98.02 Aligned_cols=123 Identities=15% Similarity=0.202 Sum_probs=84.1
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCC---eEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIP---STLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~---~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
.+|||+|||+|.++..++. .+++++|+++..+..+..+. ...+.. +.+...|... ++.+++||+|+++....+
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNA-KLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYLP 102 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHH-HHcCCCCcceEEEeccccc-cccccCceEEEECCCcCC
Confidence 5799999999999998874 57788888877665554333 333332 6666676544 344568999997642211
Q ss_pred c--------------------ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 292 W--------------------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 292 ~--------------------~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
. ......+++++.++|||||.+++..+.... .+.+.++++++||++....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~--------~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 103 TEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG--------EDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred CCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC--------HHHHHHHHHHCCCeeeeee
Confidence 0 011345899999999999999987754321 2467789999999876543
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-08 Score=100.14 Aligned_cols=122 Identities=17% Similarity=0.135 Sum_probs=82.3
Q ss_pred CeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
.+|||+|||+|.++..++.. .++++|+++..+..+.. .+...+.++.+...|.... +++++||+|+++.......
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~-n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~~~ 115 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARL-NALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYVPAP 115 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCCCCC
Confidence 58999999999999888742 67888888776655543 3333455667777776542 4567899999863211111
Q ss_pred c--------------------chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEE
Q 010274 294 Q--------------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 294 ~--------------------d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~ 348 (514)
. ....++.++.++|||||.+++...... ...++.+.+++.||.....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--------~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 116 PDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--------GVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred cccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--------CHHHHHHHHHHCCCCeEEE
Confidence 1 124578899999999999998654431 1345667778888865443
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-09 Score=114.22 Aligned_cols=93 Identities=22% Similarity=0.438 Sum_probs=69.0
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHc--CCCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~r--g~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||||||+|.++..++. ..|+++|+++ .+++.|+++ +..+.+...|...+ +++||.|++.. ++
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~-----~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~-~~ 238 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHYGVSVVGVTISA-----EQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVG-MF 238 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeC-ch
Confidence 35899999999999998885 3456665554 455555544 34456666666554 36899999877 57
Q ss_pred ccccc--hHHHHHHHHhhCCCCeEEEEEe
Q 010274 291 DWLQR--DGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 291 ~~~~d--~~~lL~el~RvLrPGG~lvis~ 317 (514)
+|+.. ...+++++.++|||||++++.+
T Consensus 239 ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 239 EHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred hhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 77743 4679999999999999999865
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=107.01 Aligned_cols=153 Identities=20% Similarity=0.206 Sum_probs=103.9
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCCC--CCCCCceEEEeccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLP--YPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~lp--~~~~sFDlV~~s~~ 288 (514)
..+|||+|||+|.++..++. ..++++++.+.+...++.+.+.... .++.+...|..++. ....+||+|+|+--
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 57899999999999999985 4677887777766666655554332 35778888876654 33347999999521
Q ss_pred -----------------ccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 289 -----------------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 289 -----------------~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
.++-..+.+.+++...++|||||++.+..|+. ...++..++++.+|...+....
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---------rl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---------RLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH---------HHHHHHHHHHhcCCCceEEEEe
Confidence 11111234679999999999999999988653 2457788999999987765554
Q ss_pred eEEEeccCcchhhhccCCCC-----CCCCcC
Q 010274 352 TVIWAKPISNSCYLKRVPGS-----RPPLCS 377 (514)
Q Consensus 352 ~~iw~Kp~~~~c~~~r~~~~-----~P~lC~ 377 (514)
..--.|+.+......++.+. +|||-.
T Consensus 196 ~p~~~k~A~~vLv~~~k~~~~~l~~~ppLii 226 (248)
T COG4123 196 YPKIGKAANRVLVEAIKGGKSGLKVLPPLII 226 (248)
T ss_pred cCCCCCcceEEEEEEecCCCCCceecCCEEE
Confidence 33333444555555555443 455544
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.9e-09 Score=100.82 Aligned_cols=130 Identities=21% Similarity=0.268 Sum_probs=81.7
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+|||||||+|.++..|+. ..++++|+++.++..+...... .+. .+.+..+| ++..+++||+|++.. +++
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~i~~~~~d---~~~~~~~fD~v~~~~-~l~ 138 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPE-AGLAGNITFEVGD---LESLLGRFDTVVCLD-VLI 138 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-cCCccCcEEEEcC---chhccCCcCEEEEcc-hhh
Confidence 35899999999999999984 3577777777666555533322 232 46677666 344457899999887 455
Q ss_pred cccc--hHHHHHHHHhhCCCCeEEEEEeCCCC------------C-C-Chh--HHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 292 WLQR--DGILLLELDRLLRPGGYFVYSSPEAY------------A-H-DPE--NRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 292 ~~~d--~~~lL~el~RvLrPGG~lvis~P~~~------------~-~-~~e--~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
|.++ ...++.++.+++++++.+.+ .+... . . ... ....-.++.++++++||++...+..
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~~i~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 215 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSLIFTF-APYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERI 215 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeEEEEE-CCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeec
Confidence 5443 35688888888765554443 22110 0 0 000 0001246788999999998876554
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.1e-09 Score=102.36 Aligned_cols=118 Identities=20% Similarity=0.317 Sum_probs=85.9
Q ss_pred CCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeec-CCCCCCCCCCceEEEecccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLG-TKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d-~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
+..-|||||||+|..+..|.+ +..+|+|+++.+++.++. +.....+..+| -+.+||..++||.|++.. +++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~-----~e~egdlil~DMG~GlpfrpGtFDg~ISIS-AvQ 123 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE-----RELEGDLILCDMGEGLPFRPGTFDGVISIS-AVQ 123 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH-----hhhhcCeeeeecCCCCCCCCCccceEEEee-eee
Confidence 567899999999999988874 566788888777766553 32223344445 378999999999999765 678
Q ss_pred cccc-------h----HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcE
Q 010274 292 WLQR-------D----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (514)
Q Consensus 292 ~~~d-------~----~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~ 344 (514)
|.-+ + ..++..++.+|++|++.++.. .+++....+.+...+..+||.
T Consensus 124 WLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf------Ypen~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 124 WLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF------YPENEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred eecccCccccChHHHHHHHhhhhhhhhccCceeEEEe------cccchHHHHHHHHHHHhhccC
Confidence 7632 2 337888999999999999843 334444556677778888884
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-08 Score=103.66 Aligned_cols=131 Identities=12% Similarity=0.085 Sum_probs=85.5
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC---CCCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR---LPYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~---lp~~~~sFDlV~~s~ 287 (514)
..+|||+|||+|.++..+++. .|+++|+++.+. +.+++.+.++ .++.+++.|+.. +.....+||+|++..
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~-~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG-RDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADV 210 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEeC
Confidence 368999999999999999852 588998886433 3445665554 466777777643 122335899999876
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEeCCCCC-CChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~-~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
. ...+...++.++.++|||||+|++....... ..+.....+.+-.+.+++.||+.++..+.
T Consensus 211 a---~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L 272 (293)
T PTZ00146 211 A---QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTL 272 (293)
T ss_pred C---CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 2 1223346778999999999999995432111 11111122332237789999998866553
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.4e-09 Score=96.39 Aligned_cols=123 Identities=20% Similarity=0.261 Sum_probs=93.2
Q ss_pred eEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCC--eEEEeecCCCCCCCCCCceEEEecc--cc
Q 010274 218 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSR--CR 289 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~--~~~~~~d~~~lp~~~~sFDlV~~s~--~~ 289 (514)
+|||+|||.|.+...|++ ...+|+|+++..+.-|+ +.|+.++.+ +.|.+.|+..-.+..+.||+|+--. .+
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~-niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQ-NIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHH-HHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 899999999999999985 34788988888776655 677777765 8899999877677778899998522 11
Q ss_pred cccccc-----hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 290 IDWLQR-----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 290 l~~~~d-----~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+...++ +..++..+.++|+|||.|+|+.-+.- .+++.+.++..||+......
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T---------~dELv~~f~~~~f~~~~tvp 205 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT---------KDELVEEFENFNFEYLSTVP 205 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc---------HHHHHHHHhcCCeEEEEeec
Confidence 222221 24489999999999999999876542 46888888898988776544
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.9e-09 Score=98.76 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=82.2
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCC-CCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL-PYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~l-p~~~~sFDlV~~s~ 287 (514)
..+|||+|||+|.++..++. .+|+++|+++..+..+..+ ++..+ .++.+..+|.... +...+.||.|++..
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n-~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN-AEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 35899999999999887652 3688999888777655533 33334 3566777776543 33346899999643
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcE
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~ 344 (514)
...+...++.++.++|||||++++..... ....++...++++||.
T Consensus 120 ----~~~~~~~~l~~~~~~LkpgG~lv~~~~~~--------~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 120 ----GSEKLKEIISASWEIIKKGGRIVIDAILL--------ETVNNALSALENIGFN 164 (198)
T ss_pred ----CcccHHHHHHHHHHHcCCCcEEEEEeecH--------HHHHHHHHHHHHcCCC
Confidence 23456779999999999999999854321 2245777888999984
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.8e-09 Score=100.58 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=67.7
Q ss_pred CeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 217 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
.+|||||||+|.++..++. ..|+++|+++..+..+..+. ...+. .+.+..+|.........+||+|++...
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l-~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~- 151 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNI-ERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAA- 151 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEECCcccCCccCCCccEEEEccC-
Confidence 5899999999999988763 36888988887665554333 33343 367788887655444578999998763
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
.++. ..++.++|+|||+|++..
T Consensus 152 ~~~~------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 152 ASTI------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cchh------hHHHHHhcCcCcEEEEEE
Confidence 4443 357889999999999854
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.2e-09 Score=110.18 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=78.0
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCC--CCCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL--PYPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~l--p~~~~sFDlV~~s~~~l 290 (514)
..+||||||+|.++..++. ..++|+|++...+..+..+..+..-.++.+..+|+..+ .+++++||.|++.+ -.
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF-Pd 202 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF-PV 202 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC-CC
Confidence 4799999999999999984 47889999988887776554433334677888887654 47789999999766 35
Q ss_pred ccccch------HHHHHHHHhhCCCCeEEEEEe
Q 010274 291 DWLQRD------GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 291 ~~~~d~------~~lL~el~RvLrPGG~lvis~ 317 (514)
+|.... ..++.++.|+|+|||.+.+.+
T Consensus 203 PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 203 PWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 554332 469999999999999999966
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.5e-09 Score=101.10 Aligned_cols=98 Identities=16% Similarity=0.078 Sum_probs=70.3
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHH------------HcCCCeEEEeecCCCCCCC-CCCce
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFAL------------ERGIPSTLGVLGTKRLPYP-SRSFE 281 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~------------~rg~~~~~~~~d~~~lp~~-~~sFD 281 (514)
.+|||+|||.|..+.+|++ ..|+|+|+++..+..++.+... .....+.+.++|...++.. ...||
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd 118 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVD 118 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCee
Confidence 5899999999999999995 4788998888777654321110 0123467788888777533 25899
Q ss_pred EEEecccccccccch--HHHHHHHHhhCCCCeEEEE
Q 010274 282 LAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVY 315 (514)
Q Consensus 282 lV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvi 315 (514)
+|+-..+ +++++.. ..++..+.++|+|||++++
T Consensus 119 ~v~D~~~-~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 119 AVYDRAA-LIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred EEEehHh-HhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9997663 5555433 5699999999999997554
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-08 Score=99.98 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=68.5
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
..+|||||||+|.++..++. ..|+++|+++..+..+..+. ++.+. ++.+..+|......+.+.||+|++...
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l-~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~- 154 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTL-KKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAA- 154 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCeEEEECCcccCCCcCCCcCEEEECCC-
Confidence 36899999999999988763 36888988887665555333 33343 578888887666556678999997763
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
.+. +...+.+.|||||.|++..
T Consensus 155 ~~~------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 155 GPD------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ccc------chHHHHHhhCCCcEEEEEE
Confidence 332 3346778999999999854
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-08 Score=97.88 Aligned_cols=142 Identities=20% Similarity=0.313 Sum_probs=89.5
Q ss_pred eEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHH----HHHHcCCC-e-EEEeecCCCC--CC------CCCCceEE
Q 010274 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQ----FALERGIP-S-TLGVLGTKRL--PY------PSRSFELA 283 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~----~A~~rg~~-~-~~~~~d~~~l--p~------~~~sFDlV 283 (514)
+|||||||||..+.+++.+ ...+...|.|.....+. .+.+.+.+ + .-...|+..- +. ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 6999999999999999864 22334444454444321 12232321 1 1122333222 22 24689999
Q ss_pred Eecccccccccch--HHHHHHHHhhCCCCeEEEEEeCCCCCC--Ch----------------hHHHhHHHHHHHHHhcCc
Q 010274 284 HCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAH--DP----------------ENRRIWNAMYDLLKSMCW 343 (514)
Q Consensus 284 ~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~~--~~----------------e~~~~~~~l~~ll~~~Gf 343 (514)
+|.+ ++|..+-. +.+|+.+.++|++||.|++-.|..+.. .. ...+..+++.+++++.|+
T Consensus 107 ~~~N-~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 107 FCIN-MLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eehh-HHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 9999 68776544 669999999999999999988854321 11 111223589999999999
Q ss_pred EEEEEecceEEEeccCcchhhhcc
Q 010274 344 KIVSKKDQTVIWAKPISNSCYLKR 367 (514)
Q Consensus 344 ~~v~~~~~~~iw~Kp~~~~c~~~r 367 (514)
..++...+ |.|+.|+.+|
T Consensus 186 ~l~~~~~M------PANN~~Lvfr 203 (204)
T PF06080_consen 186 ELEEDIDM------PANNLLLVFR 203 (204)
T ss_pred ccCccccc------CCCCeEEEEe
Confidence 87766554 4555554443
|
The function of this family is unknown. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4e-08 Score=104.21 Aligned_cols=125 Identities=14% Similarity=0.099 Sum_probs=86.2
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCC-CCCceEEEecccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRID 291 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~-~~sFDlV~~s~~~l~ 291 (514)
.+|||+|||+|.++..++. ..|+++|+++.++..+..+ ++..+.++.+..+|.....++ .++||+|+|+--.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreN-a~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKN-AADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 4799999999999988873 4688999888877766643 344456788888886544332 357999998542111
Q ss_pred cc--------------------cc----hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEE
Q 010274 292 WL--------------------QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 292 ~~--------------------~d----~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~ 347 (514)
.. .+ ...++.++.+.|+|||.+++..... .-+.+.+++++.||..++
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~---------Q~e~V~~ll~~~Gf~~v~ 402 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD---------QGAAVRGVLAENGFSGVE 402 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc---------HHHHHHHHHHHCCCcEEE
Confidence 00 01 1347777788999999999865321 134788899999998766
Q ss_pred Eecc
Q 010274 348 KKDQ 351 (514)
Q Consensus 348 ~~~~ 351 (514)
...+
T Consensus 403 v~kD 406 (423)
T PRK14966 403 TLPD 406 (423)
T ss_pred EEEc
Confidence 5443
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.9e-09 Score=105.19 Aligned_cols=102 Identities=10% Similarity=0.144 Sum_probs=74.6
Q ss_pred CCCeEEEECCCCchHHHH-Hh-----cCCCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCCCCCCCCceEEEec
Q 010274 215 NIRNVLDVGCGVASFGAY-LL-----SHDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCS 286 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~-La-----~~~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~lp~~~~sFDlV~~s 286 (514)
.+++|+|||||.|.++.. ++ +..++++|+++..++.+...+....+ ..+.|..+|+.+.+...+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 457899999998855433 32 23578888888777666644333233 35889999877764334689999988
Q ss_pred ccccccc-cchHHHHHHHHhhCCCCeEEEEEe
Q 010274 287 RCRIDWL-QRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 287 ~~~l~~~-~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+++++. +++..++..+.+.|+|||+|++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 445543 678899999999999999999965
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.4e-08 Score=97.36 Aligned_cols=94 Identities=16% Similarity=0.110 Sum_probs=67.9
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-----~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
..+|||||||+|.++..|+.. .|+++|+++..+..+.. .+.+.+. ++.+..+|.........+||+|++...
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~-~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~- 155 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAER-RLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAA- 155 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCC-
Confidence 358999999999999988742 38899888877665553 3333443 577888887655444468999997753
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
... +...+.+.|+|||++++..
T Consensus 156 ~~~------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 156 GPK------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred ccc------ccHHHHHhcCcCcEEEEEE
Confidence 332 3456889999999999854
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.9e-09 Score=92.76 Aligned_cols=102 Identities=25% Similarity=0.342 Sum_probs=71.2
Q ss_pred CeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCCC--CCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLP--YPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~lp--~~~~sFDlV~~s~~~l 290 (514)
.+|||+|||+|.++..++. ..++++|+++..+..+..+...... .++.+.+.|..... +++++||+|+++--..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG 81 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence 4799999999999988873 4677887777665544433333221 35788888876664 6788999999875333
Q ss_pred cccc-------chHHHHHHHHhhCCCCeEEEEEeC
Q 010274 291 DWLQ-------RDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 291 ~~~~-------d~~~lL~el~RvLrPGG~lvis~P 318 (514)
.... ....+++++.++|||||.+++..|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 82 PRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp SBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 2211 125689999999999999998765
|
... |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-08 Score=83.00 Aligned_cols=98 Identities=23% Similarity=0.356 Sum_probs=68.7
Q ss_pred eEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCC-CCCCceEEEeccccccc-
Q 010274 218 NVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY-PSRSFELAHCSRCRIDW- 292 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~-~~~sFDlV~~s~~~l~~- 292 (514)
++||+|||+|.++..++. ..++++|+++.....+.............+...+...... ..++||+|++.. .+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~-~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDP-PLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEcc-ceeeh
Confidence 489999999999988885 3566676665444333211111122346666677655543 457899999888 4666
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEE
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis 316 (514)
......+++.+.+.|+|||.++++
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 666788999999999999999985
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.1e-08 Score=99.31 Aligned_cols=122 Identities=15% Similarity=0.193 Sum_probs=83.6
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccc-
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR- 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~- 289 (514)
.+|||+|||+|.++..++. ..|+++|+++..+..+..+ ++..+. ++.+..+|... ++++++||+|+++--.
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n-~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCC
Confidence 5799999999999999984 3688898888777666643 344444 46778777643 2345689999985110
Q ss_pred ----c-------cccc------------chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 290 ----I-------DWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 290 ----l-------~~~~------------d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
+ ++-+ ....++.++.++|+|||++++..... +..+.+++...||.-.
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~----------~~~v~~~~~~~~~~~~ 270 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS----------MEALEEAYPDVPFTWL 270 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC----------HHHHHHHHHhCCCcee
Confidence 0 1111 11457899999999999999866421 3467788888887655
Q ss_pred EEec
Q 010274 347 SKKD 350 (514)
Q Consensus 347 ~~~~ 350 (514)
....
T Consensus 271 ~~~~ 274 (284)
T TIGR03533 271 EFEN 274 (284)
T ss_pred eecC
Confidence 4433
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.4e-08 Score=97.71 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=81.3
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+|||+|||+|.++..++. ..++++|+++..+..+..+.......++.+...|... ++++++||+|+++.-.+.
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIP 187 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCC
Confidence 35799999999999999874 4577888877766555533331223357777777633 233578999998521110
Q ss_pred -------------c------------ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 292 -------------W------------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 292 -------------~------------~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
+ ......++.++.++|+|||++++..... .-..+.+++++.||..+
T Consensus 188 ~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~---------~~~~~~~~l~~~gf~~v 258 (275)
T PRK09328 188 EADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD---------QGEAVRALLAAAGFADV 258 (275)
T ss_pred cchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECch---------HHHHHHHHHHhCCCcee
Confidence 0 0112457888899999999999854211 12457788889999755
Q ss_pred EE
Q 010274 347 SK 348 (514)
Q Consensus 347 ~~ 348 (514)
..
T Consensus 259 ~~ 260 (275)
T PRK09328 259 ET 260 (275)
T ss_pred EE
Confidence 54
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-07 Score=90.41 Aligned_cols=99 Identities=13% Similarity=0.027 Sum_probs=67.9
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC-CCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~-lp~~~~sFDlV~~s~~~l 290 (514)
..+|||+|||+|.++..++. ..|+++|+++..+..++.+..+....++.+..+|+.. ++.....+|.++...
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~--- 117 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG--- 117 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC---
Confidence 35899999999999988863 4688999888777666544333222356777776543 222223467765321
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
..+...++.++.++|+|||++++..+.
T Consensus 118 --~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 118 --GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred --CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 234467999999999999999997753
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.8e-08 Score=98.80 Aligned_cols=123 Identities=15% Similarity=0.246 Sum_probs=82.6
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccc--
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC-- 288 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~-- 288 (514)
.+|||+|||+|.++..++. ..|+++|+++..+..+..+ ++..+. ++.+..+|... ++++++||+|+++--
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n-~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEEN-AEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 4799999999999999884 4688888888777666543 333344 37788777644 344458999998510
Q ss_pred ----------cccccc------------chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHH-hcCcEE
Q 010274 289 ----------RIDWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLK-SMCWKI 345 (514)
Q Consensus 289 ----------~l~~~~------------d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~-~~Gf~~ 345 (514)
...|-+ ....++.++.+.|+|||++++...... -..+.+++. ..||..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q---------~~~~~~~~~~~~~~~~ 264 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQ---------QKSLKELLRIKFTWYD 264 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccH---------HHHHHHHHHhcCCCce
Confidence 111211 234588999999999999998664321 235667777 468866
Q ss_pred EEEec
Q 010274 346 VSKKD 350 (514)
Q Consensus 346 v~~~~ 350 (514)
+....
T Consensus 265 ~~~~~ 269 (284)
T TIGR00536 265 VENGR 269 (284)
T ss_pred eEEec
Confidence 55443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-08 Score=99.96 Aligned_cols=115 Identities=18% Similarity=0.230 Sum_probs=76.8
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeE------EEeecCCCCCCCCCCceEEEeccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPST------LGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~------~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
+.++|||||+|..+..+++. +|+++| ++++|++.|.+...... +...+...|--.+++.|+|+|..|
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD-----~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATD-----VSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeec-----CCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 47999999999766667753 677774 55667777776533221 111112223233799999999995
Q ss_pred ccccccchHHHHHHHHhhCCCCe-EEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcE
Q 010274 289 RIDWLQRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG-~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~ 344 (514)
+||.. .+.+++++.|+||+.| .+++=. +.. +.-.|.++..++.+.++.
T Consensus 110 -~HWFd-le~fy~~~~rvLRk~Gg~iavW~-----Y~d-d~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 110 -VHWFD-LERFYKEAYRVLRKDGGLIAVWN-----YND-DFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred -HHhhc-hHHHHHHHHHHcCCCCCEEEEEE-----ccC-CCcCCHHHHHHHHHHhhc
Confidence 88875 4669999999999877 555421 111 233467778888887765
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.9e-08 Score=99.59 Aligned_cols=101 Identities=16% Similarity=0.260 Sum_probs=67.1
Q ss_pred CeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHc-CCCeEEEeecCCC-CCCCCCC---ceEEEec
Q 010274 217 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKR-LPYPSRS---FELAHCS 286 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d~~~-lp~~~~s---FDlV~~s 286 (514)
.+|||+|||+|..+..|++ ..++++|+++.++..++.+..... +.++..+.+|..+ ++++... .++++..
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~ 144 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFP 144 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEe
Confidence 5799999999999988874 357777777776666554433222 3456667788655 3443322 2333333
Q ss_pred ccccccccc--hHHHHHHHHhhCCCCeEEEEEe
Q 010274 287 RCRIDWLQR--DGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 287 ~~~l~~~~d--~~~lL~el~RvLrPGG~lvis~ 317 (514)
...+++.+. ...+|+++.++|+|||.|++..
T Consensus 145 gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 145 GSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred cccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 334555543 3569999999999999999865
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.3e-08 Score=93.27 Aligned_cols=112 Identities=19% Similarity=0.285 Sum_probs=72.1
Q ss_pred CCeEEEECCCCchHHHHHhc-CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
...|-|+|||.+.++..+.. ..|...|+.... -.+..+|+..+|+++++.|++++..+++ -.
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n---------------~~Vtacdia~vPL~~~svDv~VfcLSLM--GT 135 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPN---------------PRVTACDIANVPLEDESVDVAVFCLSLM--GT 135 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-SS---------------TTEEES-TTS-S--TT-EEEEEEES-----SS
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCCC---------------CCEEEecCccCcCCCCceeEEEEEhhhh--CC
Confidence 35799999999999988764 356677665421 1356788999999999999999876432 35
Q ss_pred chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 295 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 295 d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+...++.|+.|+|||||.|+|..-..- .. ..+.+.+.++++||++.....
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAEV~SR--f~----~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAEVKSR--FE----NVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGGG---S-----HHHHHHHHHCTTEEEEEEE-
T ss_pred CcHHHHHHHHheeccCcEEEEEEeccc--Cc----CHHHHHHHHHHCCCeEEeccc
Confidence 677899999999999999999763321 11 235677889999999987543
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.5e-08 Score=95.23 Aligned_cols=131 Identities=14% Similarity=0.146 Sum_probs=96.2
Q ss_pred eccCceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHH
Q 010274 173 VVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQ 252 (514)
Q Consensus 173 ~~~g~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~ 252 (514)
+...+...|-|.|.+|-...+++.+.+. ... -.++..+.++||+|+|.|.++..++.. .-++...+++..|
T Consensus 76 ms~TdING~lgrGsMFifSe~QF~klL~----i~~--p~w~~~~~~lLDlGAGdGeit~~m~p~---feevyATElS~tM 146 (288)
T KOG3987|consen 76 MSQTDINGFLGRGSMFIFSEEQFRKLLV----IGG--PAWGQEPVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTM 146 (288)
T ss_pred hhhhccccccccCceEEecHHHHHHHHh----cCC--CccCCCCeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHH
Confidence 3466788899999999999888776543 221 234455689999999999999999864 2344555778888
Q ss_pred HHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCC-CeEEEEEe
Q 010274 253 IQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRP-GGYFVYSS 317 (514)
Q Consensus 253 ~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrP-GG~lvis~ 317 (514)
+...+..+.++.- ..+..-.+-+||+|.|.+ ++.-..++..+|+.+..+|+| +|+++++.
T Consensus 147 r~rL~kk~ynVl~----~~ew~~t~~k~dli~clN-lLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 147 RDRLKKKNYNVLT----EIEWLQTDVKLDLILCLN-LLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHhhcCCceee----ehhhhhcCceeehHHHHH-HHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 7777777654422 222222345699999988 688888899999999999999 89888643
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.6e-07 Score=91.46 Aligned_cols=120 Identities=16% Similarity=0.160 Sum_probs=79.2
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC-CCC-CCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPY-PSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~-lp~-~~~sFDlV~~s~~~l 290 (514)
.+|||+|||+|.++..++. ..|+++|+++..+..++.+. ...+ ..+..+|..+ ++. ..++||+|+++--.+
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~-~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNL-ADAG--GTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcC--CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 4799999999999998873 36888888887776655333 3333 3566677543 221 125799999763111
Q ss_pred c-------------cc--------cc----hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEE
Q 010274 291 D-------------WL--------QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (514)
Q Consensus 291 ~-------------~~--------~d----~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~ 345 (514)
. |- .+ ...++..+.++|+|||.+++..... ...++..++++.||..
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~---------~~~~v~~~l~~~g~~~ 235 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER---------QAPLAVEAFARAGLIA 235 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc---------hHHHHHHHHHHCCCCc
Confidence 0 00 01 1357788889999999999876422 1346778888899865
Q ss_pred EEE
Q 010274 346 VSK 348 (514)
Q Consensus 346 v~~ 348 (514)
...
T Consensus 236 ~~~ 238 (251)
T TIGR03704 236 RVA 238 (251)
T ss_pred eee
Confidence 543
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-07 Score=91.07 Aligned_cols=96 Identities=14% Similarity=0.028 Sum_probs=66.0
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..+|||||||+|.++..|+. ..++++|+++..+..+..++.+....++.+..+|........++||+|++... .++
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~-~~~- 156 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA-APE- 156 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC-chh-
Confidence 36899999999999887764 36788888776665554333332223467777775443223478999997763 333
Q ss_pred cchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 294 QRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
+..++.+.|+|||.+++...
T Consensus 157 -----~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 157 -----IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred -----hhHHHHHhcCCCcEEEEEEc
Confidence 34567899999999998653
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-07 Score=89.95 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=63.2
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC--------CCCCCceE
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp--------~~~~sFDl 282 (514)
..+|||+|||+|.++..++. ..|+++|+++.. ...++.+...|..+.+ +++++||+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~ 101 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDV 101 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence 46899999999999887763 247888887632 1234566666765432 45678999
Q ss_pred EEecccc-------cccc---cchHHHHHHHHhhCCCCeEEEEEe
Q 010274 283 AHCSRCR-------IDWL---QRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 283 V~~s~~~-------l~~~---~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
|++..+. +++. .....++.++.++|+|||++++..
T Consensus 102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9975421 1111 112568999999999999999965
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-07 Score=96.48 Aligned_cols=120 Identities=14% Similarity=0.159 Sum_probs=81.0
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
.+|||+|||+|.++..++. ..|+++|+++..+..+..+ ++..+. ++.+..+|... ++++++||+|+|+--.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n-~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 5799999999999999874 3688898888877666643 333443 47788877543 23456899999862100
Q ss_pred ------------cccc------------chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 291 ------------DWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 291 ------------~~~~------------d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
+|-+ ....++.++.+.|+|||++++..... ...+.+++...+|.-.
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~----------~~~~~~~~~~~~~~~~ 282 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS----------RVHLEEAYPDVPFTWL 282 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC----------HHHHHHHHhhCCCEEE
Confidence 1111 11457899999999999999865321 2346677777776544
Q ss_pred EE
Q 010274 347 SK 348 (514)
Q Consensus 347 ~~ 348 (514)
..
T Consensus 283 ~~ 284 (307)
T PRK11805 283 EF 284 (307)
T ss_pred Ee
Confidence 33
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-07 Score=94.48 Aligned_cols=105 Identities=17% Similarity=0.109 Sum_probs=70.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHH-----cCCCeEEEeecCCC-CCCCCCCceEEE
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE-----RGIPSTLGVLGTKR-LPYPSRSFELAH 284 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~-----rg~~~~~~~~d~~~-lp~~~~sFDlV~ 284 (514)
.+++|||||||+|.++..++.. +|+++|+++..+..+...+... ...++.+...|... +...+++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 3578999999999999988753 4677777776655444322211 12356777777544 233457899999
Q ss_pred ecccccccccc----hHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 285 CSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 285 ~s~~~l~~~~d----~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
+.. ..++.+. ...+++.+.+.|+|||.+++.....
T Consensus 156 ~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~ 194 (283)
T PRK00811 156 VDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSP 194 (283)
T ss_pred ECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 754 2333222 2568899999999999999865433
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.2e-07 Score=101.85 Aligned_cols=124 Identities=14% Similarity=0.177 Sum_probs=82.8
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
..+|||+|||+|.++..++. ..|+++|+++..+..+..+. ...+. .+.+..+|... ++++++||+|+|+--.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~-~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNA-IKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHH-HHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 35899999999999988873 46889988887776666443 33343 46677776532 2345689999984211
Q ss_pred c-------------cccc------------chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcE
Q 010274 290 I-------------DWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (514)
Q Consensus 290 l-------------~~~~------------d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~ 344 (514)
+ .|-+ ....++.++.++|+|||.+++..... .-+.+.+++++.||.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~---------q~~~v~~~~~~~g~~ 287 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK---------QEEAVTQIFLDHGYN 287 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc---------hHHHHHHHHHhcCCC
Confidence 1 1100 11336788899999999999864211 134678888899997
Q ss_pred EEEEec
Q 010274 345 IVSKKD 350 (514)
Q Consensus 345 ~v~~~~ 350 (514)
.+....
T Consensus 288 ~~~~~~ 293 (506)
T PRK01544 288 IESVYK 293 (506)
T ss_pred ceEEEe
Confidence 665443
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.4e-07 Score=98.64 Aligned_cols=124 Identities=20% Similarity=0.221 Sum_probs=83.5
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCC----CCCCCceEEEe
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP----YPSRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp----~~~~sFDlV~~ 285 (514)
+.+|||+|||+|..+..++. ..|+++|+++..+.....+ ++..|. ++.+...|...++ +..++||.|++
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n-~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 331 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN-AQRLGLKSIKILAADSRNLLELKPQWRGYFDRILL 331 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHH-HHHcCCCeEEEEeCChhhcccccccccccCCEEEE
Confidence 36899999999999988874 3588888887777655533 344454 5677788877665 44578999995
Q ss_pred ----cc-cccccccc----------------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc-Cc
Q 010274 286 ----SR-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CW 343 (514)
Q Consensus 286 ----s~-~~l~~~~d----------------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~-Gf 343 (514)
+. .++.+.++ ...+|.++.++|||||+|++++-..+. .++ -..+..++++. +|
T Consensus 332 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~--~En---e~~v~~~l~~~~~~ 406 (434)
T PRK14901 332 DAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP--AEN---EAQIEQFLARHPDW 406 (434)
T ss_pred eCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh--hhH---HHHHHHHHHhCCCc
Confidence 21 22332222 246899999999999999998755431 222 23455666665 46
Q ss_pred EE
Q 010274 344 KI 345 (514)
Q Consensus 344 ~~ 345 (514)
++
T Consensus 407 ~~ 408 (434)
T PRK14901 407 KL 408 (434)
T ss_pred Ee
Confidence 53
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.2e-07 Score=97.78 Aligned_cols=125 Identities=21% Similarity=0.318 Sum_probs=82.5
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC--CCCCCceEEEe----
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHC---- 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp--~~~~sFDlV~~---- 285 (514)
+.+|||+|||+|..+..++. ..|+++|+++..+...+ +.+...+..+.+..+|...++ +..++||.|++
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~-~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 323 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR-ENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPC 323 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCC
Confidence 46899999999999988874 36888888887776555 344445666777888877654 34578999994
Q ss_pred ccc-cc------ccccc----------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc-CcEEE
Q 010274 286 SRC-RI------DWLQR----------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKIV 346 (514)
Q Consensus 286 s~~-~l------~~~~d----------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~-Gf~~v 346 (514)
+.. ++ .|... ...+|.++.++|||||++++++-..... ++. ..+...+++. +|+++
T Consensus 324 s~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~--Ene---~~v~~~l~~~~~~~~~ 397 (427)
T PRK10901 324 SATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE--ENE---QQIKAFLARHPDAELL 397 (427)
T ss_pred CcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh--hCH---HHHHHHHHhCCCCEEe
Confidence 321 11 12111 1358999999999999999988654321 221 2445555554 45543
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-07 Score=92.28 Aligned_cols=137 Identities=19% Similarity=0.242 Sum_probs=83.2
Q ss_pred CCCCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcC-----CCeEEEeecCCCCCCCCCCceEEEeccc
Q 010274 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG-----IPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg-----~~~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
....++||.|||.|+++..|+-.....+|+. +..+..++.|++.. .-..+....+++...+.++||+|++--|
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlV--Ep~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLV--EPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEE--ES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEe--ccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 3457899999999999998874333344443 44555556666432 2235555667766545579999999996
Q ss_pred ccccccch--HHHHHHHHhhCCCCeEEEEEeC----CCCCCChhH---HHhHHHHHHHHHhcCcEEEEEecceE
Q 010274 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSP----EAYAHDPEN---RRIWNAMYDLLKSMCWKIVSKKDQTV 353 (514)
Q Consensus 289 ~l~~~~d~--~~lL~el~RvLrPGG~lvis~P----~~~~~~~e~---~~~~~~l~~ll~~~Gf~~v~~~~~~~ 353 (514)
+.|+.|. -.+|+.+...|+|+|.+++-.. .....+.++ .+.-+.+.++++++|++++..+.+..
T Consensus 132 -lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~ 204 (218)
T PF05891_consen 132 -LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKG 204 (218)
T ss_dssp -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT
T ss_pred -hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccC
Confidence 5555544 5699999999999999998442 111112222 12346889999999999998877643
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.9e-07 Score=97.20 Aligned_cols=105 Identities=14% Similarity=0.150 Sum_probs=72.0
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEE--EeecCCCCCC--CCCCceEEEe--
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTL--GVLGTKRLPY--PSRSFELAHC-- 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~--~~~d~~~lp~--~~~sFDlV~~-- 285 (514)
+.+|||+|||+|..+..++. ..|+++|+++..+.... +.++..|..+.+ ..+|....++ ++++||.|++
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~-~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVY-ENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 36899999999999988874 46888888877665554 333444555433 4455444443 4578999995
Q ss_pred --c-ccccccccc----------------hHHHHHHHHhhCCCCeEEEEEeCCCC
Q 010274 286 --S-RCRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAY 321 (514)
Q Consensus 286 --s-~~~l~~~~d----------------~~~lL~el~RvLrPGG~lvis~P~~~ 321 (514)
+ ..+++..++ ...+|.++.++|||||+|++++-...
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 2 223333332 25699999999999999999986553
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.7e-07 Score=88.02 Aligned_cols=121 Identities=17% Similarity=0.255 Sum_probs=83.7
Q ss_pred eEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC-CC--CCCCCceEEEeccccc
Q 010274 218 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LP--YPSRSFELAHCSRCRI 290 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~-lp--~~~~sFDlV~~s~~~l 290 (514)
.+||||||.|.+...+|. ..++|+|+...-+..+..+..+....++.+..+|+.. +. ++++++|.|+..+ --
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F-PD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF-PD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC-CC
Confidence 699999999999999983 5789999998888777755555555578888888765 22 4568999999765 24
Q ss_pred ccccch--------HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc--CcEEEE
Q 010274 291 DWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM--CWKIVS 347 (514)
Q Consensus 291 ~~~~d~--------~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~--Gf~~v~ 347 (514)
+|.... ..++..+.++|+|||.|.+.+-. ...++.+.+.++.. +|+.+.
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~--------~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV--------EEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES---------HHHHHHHHHHHHHHSTTEEEE-
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC--------HHHHHHHHHHHHhcCcCeEEcc
Confidence 443321 55999999999999999997622 12345666677764 776653
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.7e-07 Score=89.86 Aligned_cols=100 Identities=16% Similarity=0.024 Sum_probs=74.7
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHH------------HHHcCCCeEEEeecCCCCCCC---CCC
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQF------------ALERGIPSTLGVLGTKRLPYP---SRS 279 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~------------A~~rg~~~~~~~~d~~~lp~~---~~s 279 (514)
.+||+.|||.|.-+.+|++ ..|+|+|+++..+.....+. ...++..+.+.++|...++.. .+.
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~ 124 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPV 124 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCC
Confidence 5899999999999999995 57899999888776553311 112356788999999888642 257
Q ss_pred ceEEEeccccccccc-ch-HHHHHHHHhhCCCCeEEEEEe
Q 010274 280 FELAHCSRCRIDWLQ-RD-GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 280 FDlV~~s~~~l~~~~-d~-~~lL~el~RvLrPGG~lvis~ 317 (514)
||+|+-..+ +..++ +. ..+.+.+.++|+|||.+++..
T Consensus 125 fD~VyDra~-~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 125 FDIWYDRGA-YIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred cCeeeeehh-HhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 999986553 44443 32 569999999999999988754
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-07 Score=92.13 Aligned_cols=134 Identities=17% Similarity=0.249 Sum_probs=96.2
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHc---CCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~r---g~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..++|||||.|.+...|.+..|- .+.-.|.+..|++.++.. ++.....+.|.+.++|.+++||+|+++. .+||+
T Consensus 74 p~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSl-slHW~ 150 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSL-SLHWT 150 (325)
T ss_pred cceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhh-hhhhh
Confidence 46999999999999999865422 222234555566666544 4556778899999999999999999988 59999
Q ss_pred cchHHHHHHHHhhCCCCeEEEEEeCCC---CC-----CChhH---------H---HhHHHHHHHHHhcCcEEEEEecceE
Q 010274 294 QRDGILLLELDRLLRPGGYFVYSSPEA---YA-----HDPEN---------R---RIWNAMYDLLKSMCWKIVSKKDQTV 353 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~lvis~P~~---~~-----~~~e~---------~---~~~~~l~~ll~~~Gf~~v~~~~~~~ 353 (514)
.+....+.++...|||+|.|+-+.-.. |. .+.+. . ..-+.+..++.++||.......+..
T Consensus 151 NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDtDEi 230 (325)
T KOG2940|consen 151 NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDTDEI 230 (325)
T ss_pred ccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceecccce
Confidence 999999999999999999998543110 00 00000 0 1124678899999998877655543
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-06 Score=83.38 Aligned_cols=118 Identities=16% Similarity=0.053 Sum_probs=83.9
Q ss_pred CCeEEEECCCCchHHHHHh----cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCC-CCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La----~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~l-p~~~~sFDlV~~s~~~l 290 (514)
..+++|||||||+++..++ ...|+++|-++..+.....+.++-...++.++.+++-.. +-. .+||.|+....
T Consensus 35 g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~-~~~daiFIGGg-- 111 (187)
T COG2242 35 GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL-PSPDAIFIGGG-- 111 (187)
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC-CCCCEEEECCC--
Confidence 3589999999999999988 357888988877666655454444445677777775433 322 27999996552
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCc-EEEE
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW-KIVS 347 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf-~~v~ 347 (514)
.+.+.+|+.+...|||||+++...- ..+......+.+++.|+ +++.
T Consensus 112 ---~~i~~ile~~~~~l~~ggrlV~nai--------tlE~~~~a~~~~~~~g~~ei~~ 158 (187)
T COG2242 112 ---GNIEEILEAAWERLKPGGRLVANAI--------TLETLAKALEALEQLGGREIVQ 158 (187)
T ss_pred ---CCHHHHHHHHHHHcCcCCeEEEEee--------cHHHHHHHHHHHHHcCCceEEE
Confidence 4567899999999999999997431 12233456677889999 4443
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.4e-07 Score=89.46 Aligned_cols=113 Identities=16% Similarity=0.254 Sum_probs=82.7
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
....|-|+|||.+.++..- ...|..+|+.+. +-.+..+|+.++|+++++.|++++..++ ...
T Consensus 180 ~~~vIaD~GCGEakiA~~~-~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CLSL--Mgt 241 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIASSE-RHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCLSL--MGT 241 (325)
T ss_pred CceEEEecccchhhhhhcc-ccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeHhh--hcc
Confidence 3457999999999887622 236777776542 2235678899999999999999866532 357
Q ss_pred chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 295 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 295 d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
+...++.|++|+|++||.|+|..-.. +..+ -..+.+.+..+||.+......
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv~S--Rf~d----v~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEVKS--RFSD----VKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEehhh--hccc----HHHHHHHHHHcCCeeeehhhh
Confidence 78889999999999999999965322 1111 235778899999988765543
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.9e-07 Score=89.17 Aligned_cols=128 Identities=18% Similarity=0.265 Sum_probs=81.5
Q ss_pred eEEEECCCCchHHHHHhc------CCCccccCChhhhhHHHHHHHHHcC----CCeEEEeec--CC--CCCCCCCCceEE
Q 010274 218 NVLDVGCGVASFGAYLLS------HDIIAMSLAPNDVHENQIQFALERG----IPSTLGVLG--TK--RLPYPSRSFELA 283 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~------~~V~gvdis~~dis~a~~~~A~~rg----~~~~~~~~d--~~--~lp~~~~sFDlV 283 (514)
+||+||||.|.....+.+ -.|.+.|+++.++ +..+++. ..+...+.| .. .-|.+.+++|+|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai-----~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI-----ELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH-----HHHHhccccchhhhcccceeccchhccCCCCcCccceE
Confidence 799999999988888774 2466777777655 4433331 112222223 22 234567899999
Q ss_pred Eecccccccccch-HHHHHHHHhhCCCCeEEEEEeCCCCC------------------CChhHH---HhHHHHHHHHHhc
Q 010274 284 HCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYSSPEAYA------------------HDPENR---RIWNAMYDLLKSM 341 (514)
Q Consensus 284 ~~s~~~l~~~~d~-~~lL~el~RvLrPGG~lvis~P~~~~------------------~~~e~~---~~~~~l~~ll~~~ 341 (514)
++.+++....++. ...+.++.++|||||.+++.+-..+. +..... -.-+++..++.++
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhc
Confidence 9888543333333 66999999999999999997643221 000000 0125888999999
Q ss_pred CcEEEEEec
Q 010274 342 CWKIVSKKD 350 (514)
Q Consensus 342 Gf~~v~~~~ 350 (514)
||..+....
T Consensus 229 gf~~~~~~~ 237 (264)
T KOG2361|consen 229 GFEEVQLEV 237 (264)
T ss_pred ccchhcccc
Confidence 998775443
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.3e-07 Score=96.89 Aligned_cols=123 Identities=19% Similarity=0.219 Sum_probs=81.1
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEe----
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHC---- 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~---- 285 (514)
+.+|||+|||+|..+..++. ..|+++|+++..+..+. +.+++.|. ++.+...|+..++ ++++||+|++
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~-~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR-SHASALGITIIETIEGDARSFS-PEEQPDAILLDAPC 328 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCC
Confidence 36899999999998877763 36888988887776655 34444455 4677788877665 4568999995
Q ss_pred cc-cccc------ccc----------chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc-CcEE
Q 010274 286 SR-CRID------WLQ----------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKI 345 (514)
Q Consensus 286 s~-~~l~------~~~----------d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~-Gf~~ 345 (514)
+. .++. |.. ....+|.++.++|||||++++++-.... .++ -..+..++++. +|..
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~--~En---e~~v~~~l~~~~~~~~ 401 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP--EEN---ELQIEAFLQRHPEFSA 401 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh--hhH---HHHHHHHHHhCCCCEE
Confidence 22 1111 111 1235899999999999999998865432 121 12445666654 4543
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.3e-07 Score=91.96 Aligned_cols=93 Identities=12% Similarity=0.051 Sum_probs=65.8
Q ss_pred CeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
.+|||||||+|.++..++. ..|+++|+++..+..+.. .+++.+. ++.+..+|....+....+||+|++... .
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~-~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g-~ 159 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR-NVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVG-V 159 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEeCChhhcccccCCccEEEECCc-h
Confidence 5899999999999998884 237888888776655543 3333343 467777776655544568999997753 3
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+. ....+.+.|+|||.+++..
T Consensus 160 ~~------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 160 DE------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred HH------hHHHHHHhcCCCCEEEEEe
Confidence 22 2345678999999998854
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.9e-07 Score=89.25 Aligned_cols=121 Identities=12% Similarity=0.104 Sum_probs=80.3
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
.+|||+|||+|.++..++. ..|+++|+++ .+++.++++..++.+...|+..+.. +.+||+|+++....+.
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp-----~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNP-----EFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKI 139 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCcccc
Confidence 4799999999999887764 3566776655 4556666555567788888776653 4689999986533321
Q ss_pred ccc-------------------hHHHHHHHHhhCCCCeEEEEEeC--CCCCCChhHHHhHHHHHHHHHhcCcEEEE
Q 010274 293 LQR-------------------DGILLLELDRLLRPGGYFVYSSP--EAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 293 ~~d-------------------~~~lL~el~RvLrPGG~lvis~P--~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~ 347 (514)
... ...++..+..+|+|+|.+.+.-- +.|. .. -.-++..+++++.||....
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~-~s---l~~~~y~~~l~~~g~~~~~ 211 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYD-GT---MKSNKYLKWSKQTGLVTYA 211 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccccc-cc---CCHHHHHHHHHhcCcEecC
Confidence 110 24577888899999998776421 2221 10 1124778999999997643
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.3e-07 Score=89.87 Aligned_cols=104 Identities=16% Similarity=0.140 Sum_probs=72.0
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEe----
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHC---- 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~---- 285 (514)
+.+|||+|||+|..+..++. ..|+++|+++..+.....+.. ..+. ++.+...|...++...+.||.|++
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~-~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pc 150 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANIN-RCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPC 150 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHH-HcCCCcEEEecCCHHHhhhhccCCCEEEEcCCC
Confidence 35899999999999988764 368888888877765554333 3343 567777777666555567999985
Q ss_pred cc-ccccccc----------------chHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 286 SR-CRIDWLQ----------------RDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 286 s~-~~l~~~~----------------d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
+. .++...+ ....+|.++.++|||||++++++-..
T Consensus 151 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 151 SGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 21 1111111 12348999999999999999988654
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.8e-07 Score=91.18 Aligned_cols=103 Identities=14% Similarity=0.175 Sum_probs=66.2
Q ss_pred CCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHc-CCCeEEEeecCCCC-CCCCCCceEEEeccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRL-PYPSRSFELAHCSRC 288 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d~~~l-p~~~~sFDlV~~s~~ 288 (514)
.+++|||||||+|.++..++. ..++++|+++..+..+...+.... ..++.+..+|.... .-..++||+|++...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~ 145 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF 145 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence 346899999999999998874 356777766655543332222111 23567777775432 222368999997431
Q ss_pred cccccc---chHHHHHHHHhhCCCCeEEEEEe
Q 010274 289 RIDWLQ---RDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 289 ~l~~~~---d~~~lL~el~RvLrPGG~lvis~ 317 (514)
--...+ ....+++++.++|+|||.+++..
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 111111 12679999999999999999843
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2e-06 Score=87.55 Aligned_cols=121 Identities=20% Similarity=0.247 Sum_probs=80.0
Q ss_pred eEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 218 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
+|||||||+|.++..++. ..|+++|+++..+.-+.. .|...+. +..++..|.. -+.. ++||+|+|+---+..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~-Na~~~~l~~~~~~~~dlf-~~~~-~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARE-NAERNGLVRVLVVQSDLF-EPLR-GKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHH-HHHHcCCccEEEEeeecc-cccC-CceeEEEeCCCCCCC
Confidence 799999999999999984 378899998887766663 4444453 3344444321 1223 489999986321111
Q ss_pred c-----c-------------------chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcC-cEEEE
Q 010274 293 L-----Q-------------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVS 347 (514)
Q Consensus 293 ~-----~-------------------d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~G-f~~v~ 347 (514)
- + -...++.++.+.|+|||.+++..-.. .-+.+.+++++.| |..+.
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~---------q~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT---------QGEAVKALFEDTGFFEIVE 260 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC---------cHHHHHHHHHhcCCceEEE
Confidence 1 0 11348888999999999999865221 1357889999999 66554
Q ss_pred Eec
Q 010274 348 KKD 350 (514)
Q Consensus 348 ~~~ 350 (514)
...
T Consensus 261 ~~~ 263 (280)
T COG2890 261 TLK 263 (280)
T ss_pred EEe
Confidence 443
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=5e-07 Score=102.90 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=85.9
Q ss_pred CCeEEEECCCCchHHHHHhc--C-CCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCC-CCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--H-DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL-PYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~-~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~l-p~~~~sFDlV~~s~~~ 289 (514)
.++|||+|||+|.++..++. + .|+++|+++..+..+..+...... ..+.+..+|+.+. .-..++||+|++.--.
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~ 618 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT 618 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence 36899999999999999884 2 488999998888777755544322 2467888885432 1114689999985311
Q ss_pred c----------ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 290 I----------DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 290 l----------~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
+ ....+...++..+.++|+|||.++++..... +....+.+.+.|+.+...+..
T Consensus 619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~---------~~~~~~~~~~~g~~~~~i~~~ 681 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG---------FKMDEEGLAKLGLKAEEITAK 681 (702)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---------CChhHHHHHhCCCeEEEEecC
Confidence 1 1122335688899999999999988764321 112256778889877755443
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.3e-06 Score=86.55 Aligned_cols=122 Identities=14% Similarity=0.114 Sum_probs=73.9
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHc----CCCeEEEeecCCC-CCCCCCCceEEEe
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKR-LPYPSRSFELAHC 285 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~r----g~~~~~~~~d~~~-lp~~~~sFDlV~~ 285 (514)
++++||+||||+|.++..++.. .++++|+++..+..+...+.... ..++.+...|... +....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3468999999999999888643 46777777655544432222111 1245555555432 1222468999997
Q ss_pred cccccccccc----hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc
Q 010274 286 SRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 341 (514)
Q Consensus 286 s~~~l~~~~d----~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~ 341 (514)
... .+..+. ...+++.+.++|+|||.+++.....+.. ...+..+.+.+++.
T Consensus 152 D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~~~~tl~~~ 206 (270)
T TIGR00417 152 DST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQ----LELITDLKRDVKEA 206 (270)
T ss_pred eCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccC----HHHHHHHHHHHHHH
Confidence 542 222221 2568899999999999999875443321 22344555555555
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-06 Score=93.79 Aligned_cols=124 Identities=16% Similarity=0.216 Sum_probs=79.9
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCC--CCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp--~~~~sFDlV~~s~ 287 (514)
..+|||+|||+|..+..++. ..|+++|+++..+..+. +.+...|. ++.+..+|...++ ++ ++||+|++..
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~ 328 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDA 328 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcC
Confidence 35899999999999988874 35888888877765555 33344454 4677788876653 33 6899999632
Q ss_pred -----ccccccc------c----------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc-CcEE
Q 010274 288 -----CRIDWLQ------R----------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKI 345 (514)
Q Consensus 288 -----~~l~~~~------d----------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~-Gf~~ 345 (514)
..+.+.+ . ...+|.++.++|||||.+++++..... .++ -..+..++++. .|+.
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~--~En---e~vv~~~l~~~~~~~~ 403 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK--EEN---EEVIEAFLEEHPEFEL 403 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh--hhh---HHHHHHHHHhCCCcEE
Confidence 1111111 0 134899999999999999988755431 111 12445556654 3655
Q ss_pred E
Q 010274 346 V 346 (514)
Q Consensus 346 v 346 (514)
+
T Consensus 404 ~ 404 (444)
T PRK14902 404 V 404 (444)
T ss_pred e
Confidence 4
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.7e-07 Score=96.32 Aligned_cols=104 Identities=15% Similarity=0.191 Sum_probs=73.5
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCC-CCCCCceEEEe---
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHC--- 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp-~~~~sFDlV~~--- 285 (514)
+.+|||+|||+|..+.+++. ..|+++|+++..+.... +.+...|. ++.+...|...++ +.+++||.|++
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~-~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaP 316 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVE-KHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAP 316 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCC
Confidence 35899999999998887763 46888888887776555 33444454 4677788877765 44578999996
Q ss_pred -cc-ccccccc----------------chHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 286 -SR-CRIDWLQ----------------RDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 286 -s~-~~l~~~~----------------d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
+. ..+...+ ....+|.++.+.|||||++++++-..
T Consensus 317 Csg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 317 CTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 21 1221111 12457999999999999999988654
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=4e-06 Score=87.67 Aligned_cols=126 Identities=16% Similarity=0.114 Sum_probs=81.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHH------------cCCCeEEEeecCCC-CCCCC
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE------------RGIPSTLGVLGTKR-LPYPS 277 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~------------rg~~~~~~~~d~~~-lp~~~ 277 (514)
.+++||+||||+|..+..++.. .|+.+|+++ .+++.|++ ...++.+...|+.. +.-..
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDp-----eVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~ 224 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDG-----SMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPS 224 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCH-----HHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcC
Confidence 4578999999999988888753 455665555 44455553 13466777777554 33345
Q ss_pred CCceEEEecccccccc-----cchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 278 RSFELAHCSRCRIDWL-----QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~-----~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
++||+|++... -... .....+++.+.+.|+|||.+++.....+. ....+..+.+.++++++.+.....
T Consensus 225 ~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~----~~~~~~~i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 225 SLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPAD----APLVYWSIGNTIEHAGLTVKSYHT 297 (374)
T ss_pred CCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhh----hHHHHHHHHHHHHHhCCceEEEEE
Confidence 68999997631 1111 11155899999999999999886533321 122334577888999987664443
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.9e-07 Score=87.12 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc---C--CCccccCChhhhhHHHHHHHHHcCCCeEEEe
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---H--DIIAMSLAPNDVHENQIQFALERGIPSTLGV 267 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~ 267 (514)
......+.+.+... +..+|||||||+|.+++.|+. . .|+++|..+.-...+....+.....++.+..
T Consensus 58 P~~~a~~l~~L~l~--------pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 58 PSMVARMLEALDLK--------PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp HHHHHHHHHHTTC---------TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred HHHHHHHHHHHhcC--------CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 34445555666532 236899999999999998873 2 3678888886665555444443334678888
Q ss_pred ecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 268 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 268 ~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+|....--....||.|++..+ ... .-..+.+.||+||++++-.
T Consensus 130 gdg~~g~~~~apfD~I~v~~a-~~~------ip~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 130 GDGSEGWPEEAPFDRIIVTAA-VPE------IPEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp S-GGGTTGGG-SEEEEEESSB-BSS--------HHHHHTEEEEEEEEEEE
T ss_pred cchhhccccCCCcCEEEEeec-cch------HHHHHHHhcCCCcEEEEEE
Confidence 885443224468999998764 332 2245677799999999854
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3e-06 Score=83.95 Aligned_cols=118 Identities=17% Similarity=0.155 Sum_probs=84.5
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCC-eEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~-~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
+.+|||.|.|+|.++.+|+. .+|++.|+.......|..++......+ +.+...|..+.-+++ .||+|+.
T Consensus 95 g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~L---- 169 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFL---- 169 (256)
T ss_pred CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEE----
Confidence 46899999999999999993 467888776655555544443322223 667777777666664 8999982
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEE
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~ 348 (514)
. +++|..++..+..+|+|||.+++-.|..- +.++....+++.||..++.
T Consensus 170 -D-mp~PW~~le~~~~~Lkpgg~~~~y~P~ve--------Qv~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 170 -D-LPDPWNVLEHVSDALKPGGVVVVYSPTVE--------QVEKTVEALRERGFVDIEA 218 (256)
T ss_pred -c-CCChHHHHHHHHHHhCCCcEEEEEcCCHH--------HHHHHHHHHHhcCccchhh
Confidence 2 57888999999999999999999877541 2334445566679876543
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.5e-07 Score=93.05 Aligned_cols=105 Identities=19% Similarity=0.408 Sum_probs=69.1
Q ss_pred CCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHc----------CCCeEEEeecCCCC----CCC-
Q 010274 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER----------GIPSTLGVLGTKRL----PYP- 276 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~r----------g~~~~~~~~d~~~l----p~~- 276 (514)
...+|||+|||-|.-..-... ..++|+|++...+.++..+...-+ ...+.+..+|.... .+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 457899999998865544443 357899999888877775552211 12456666664322 123
Q ss_pred -CCCceEEEecccccccc-cch---HHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 277 -SRSFELAHCSRCRIDWL-QRD---GILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 277 -~~sFDlV~~s~~~l~~~-~d~---~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
...||+|-|.++ +||. .+. ..+|..+...|||||+|+.++|+.
T Consensus 142 ~~~~FDvVScQFa-lHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQFA-LHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES--GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHHH-HHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 359999999984 7775 332 449999999999999999999865
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.3e-06 Score=94.25 Aligned_cols=120 Identities=18% Similarity=0.111 Sum_probs=80.8
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHc------------CCCeEEEeecCCC-CCCCC
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER------------GIPSTLGVLGTKR-LPYPS 277 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~r------------g~~~~~~~~d~~~-lp~~~ 277 (514)
++++|||||||+|..+..++++ +++.+|+++..+ +.+++. ..++.+...|..+ +...+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi-----~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~ 371 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMT-----ELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLA 371 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHH-----HHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCC
Confidence 3578999999999999888753 456666655544 554441 1356777777654 22234
Q ss_pred CCceEEEecccccccccc-----hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcE
Q 010274 278 RSFELAHCSRCRIDWLQR-----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d-----~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~ 344 (514)
++||+|++.. ..+..+. ..++++.+.+.|||||.+++.....+.. .+.+.++.+.+++.||.
T Consensus 372 ~~fDvIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 372 EKFDVIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA----PKAFWSIEATLEAAGLA 438 (521)
T ss_pred CCCCEEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc----hHHHHHHHHHHHHcCCE
Confidence 6899999764 2332221 1458999999999999999866443322 23356788889999993
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.7e-06 Score=85.92 Aligned_cols=122 Identities=15% Similarity=0.155 Sum_probs=73.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEeecCCCC--CCCCCCceEEE
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKRL--PYPSRSFELAH 284 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~----rg~~~~~~~~d~~~l--p~~~~sFDlV~ 284 (514)
.+++||+||||.|.++..++.+ .|+.+|+++..+..+...+... ...++.++.+|.... ..++++||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 3578999999999999999854 3555666654443333222111 123577777775332 12356899999
Q ss_pred ecccccccccc----hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc
Q 010274 285 CSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 341 (514)
Q Consensus 285 ~s~~~l~~~~d----~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~ 341 (514)
+.. .-++.+. ...+++.+.++|+|||.++......+... ..+..+.+.+++.
T Consensus 171 ~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~----~~~~~i~~tl~~~ 226 (308)
T PLN02366 171 VDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHM----DLIEDLIAICRET 226 (308)
T ss_pred EcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccch----HHHHHHHHHHHHH
Confidence 753 2222221 24689999999999999987554443322 2233444445544
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1e-06 Score=89.41 Aligned_cols=105 Identities=18% Similarity=0.356 Sum_probs=73.3
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHc------CCCeEEEeecC------CCCCCCCCCc
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER------GIPSTLGVLGT------KRLPYPSRSF 280 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~r------g~~~~~~~~d~------~~lp~~~~sF 280 (514)
+..+||+|||-|.-.+.... ..++++||+...+.+++...-.-+ ...+.|..+|. ..+++++.+|
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~f 197 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRF 197 (389)
T ss_pred ccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCc
Confidence 35699999999976555443 356788887766655553332111 12467777774 2345566669
Q ss_pred eEEEecccccccc-cc---hHHHHHHHHhhCCCCeEEEEEeCCCC
Q 010274 281 ELAHCSRCRIDWL-QR---DGILLLELDRLLRPGGYFVYSSPEAY 321 (514)
Q Consensus 281 DlV~~s~~~l~~~-~d---~~~lL~el~RvLrPGG~lvis~P~~~ 321 (514)
|+|-|-+| +||. .+ ...+|..+.+.|||||+|+-+.|+..
T Consensus 198 DivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 198 DIVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred ceeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 99999885 7765 22 25599999999999999999998763
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.8e-06 Score=82.28 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=64.5
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
..+|||||||+|..++.|++ ..|++++..+.-...+..++. ..|. ++.+.++|...---+...||.|+...+ ...
T Consensus 73 g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~-~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaa-a~~ 150 (209)
T COG2518 73 GDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLE-TLGYENVTVRHGDGSKGWPEEAPYDRIIVTAA-APE 150 (209)
T ss_pred CCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHH-HcCCCceEEEECCcccCCCCCCCcCEEEEeec-cCC
Confidence 36899999999999999985 477888877655444443332 3344 677888874333223478999997764 333
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
++ ..+.+-||+||++++-.
T Consensus 151 vP------~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 151 VP------EALLDQLKPGGRLVIPV 169 (209)
T ss_pred CC------HHHHHhcccCCEEEEEE
Confidence 32 34567799999999854
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.31 E-value=2e-06 Score=80.57 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=62.9
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
.+|||||||+|.++..++.. .++++|+++..+...+.+... ..++.+..+|+.++++++..||.|+++. -.+ ..
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~-Py~-~~ 90 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNL-PYN-IS 90 (169)
T ss_pred CEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECC-Ccc-cH
Confidence 57999999999999999864 577887776555443322211 2357888899988888877799999653 222 21
Q ss_pred chHHHHHHHHhh--CCCCeEEEEE
Q 010274 295 RDGILLLELDRL--LRPGGYFVYS 316 (514)
Q Consensus 295 d~~~lL~el~Rv--LrPGG~lvis 316 (514)
..++..+.+. +.++|.+++.
T Consensus 91 --~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 91 --TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred --HHHHHHHHhcCCCcceEEEEEE
Confidence 2344444432 4578888874
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.2e-06 Score=89.16 Aligned_cols=121 Identities=15% Similarity=0.175 Sum_probs=81.1
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCC----CCCCCCCceEEEecccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR----LPYPSRSFELAHCSRCR 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~----lp~~~~sFDlV~~s~~~ 289 (514)
.+|||+|||+|.++..|+. ..|+++|+++.++..+..+. +..+. ++.+..+|+.. +++.+++||+|++.--
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~-~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPP- 376 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENA-RRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPP- 376 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHH-HHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcC-
Confidence 5899999999999999985 46889988888887766433 33343 57888888643 3355578999996532
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCC-CCCCChhHHHhHHHHHHHHHhcCcEEEEEecceE
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPE-AYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTV 353 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~-~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~~~ 353 (514)
+.. ....+..+.+ ++|++.++++..+ ... +++. .+.+.||++.+.+....
T Consensus 377 --r~g-~~~~~~~l~~-~~~~~ivyvSCnp~tla---------RDl~-~L~~~gY~l~~i~~~Dm 427 (443)
T PRK13168 377 --RAG-AAEVMQALAK-LGPKRIVYVSCNPATLA---------RDAG-VLVEAGYRLKRAGMLDM 427 (443)
T ss_pred --CcC-hHHHHHHHHh-cCCCeEEEEEeChHHhh---------ccHH-HHhhCCcEEEEEEEecc
Confidence 221 2345555555 6999999987533 322 2333 34567999887766543
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.4e-06 Score=81.08 Aligned_cols=118 Identities=15% Similarity=0.230 Sum_probs=81.3
Q ss_pred CeEEEECCCCchHHHHHhc-CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCC---CCCCceEEEeccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY---PSRSFELAHCSRCRIDW 292 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~---~~~sFDlV~~s~~~l~~ 292 (514)
-++|||||=+......-.+ -.|+.+|+.+... .+.+.|....|. ++++||+|.||. ++.+
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~---------------~I~qqDFm~rplp~~~~e~FdvIs~SL-VLNf 116 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQHP---------------GILQQDFMERPLPKNESEKFDVISLSL-VLNF 116 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCCCC---------------CceeeccccCCCCCCcccceeEEEEEE-EEee
Confidence 5899999875543332222 2466666654221 244566666555 367899999999 7999
Q ss_pred ccch---HHHHHHHHhhCCCCeE-----EEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 293 LQRD---GILLLELDRLLRPGGY-----FVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 293 ~~d~---~~lL~el~RvLrPGG~-----lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
++++ .++++.+.+.|+|+|. |+++.|..-.. ....-..+.+..+++.+||..++.+..
T Consensus 117 VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~-NSRy~~~~~l~~im~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVT-NSRYMTEERLREIMESLGFTRVKYKKS 182 (219)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhh-cccccCHHHHHHHHHhCCcEEEEEEec
Confidence 9988 5599999999999999 99988854210 000012357889999999999987654
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.7e-06 Score=83.44 Aligned_cols=133 Identities=17% Similarity=0.233 Sum_probs=90.8
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHc----C----------------------------
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----G---------------------------- 260 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~r----g---------------------------- 260 (514)
...+||--|||.|+++..++.. .+.+.+++.-|+-.. ++.... +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s--~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLAS--NFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHH--HHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 3468999999999999999854 455666665553221 222111 0
Q ss_pred ----------CCeEEEeecCCCCCCCC---CCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChh-
Q 010274 261 ----------IPSTLGVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE- 326 (514)
Q Consensus 261 ----------~~~~~~~~d~~~lp~~~---~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e- 326 (514)
.+.....+|......++ ++||+|++.+ .+.-..+.-.+|..+.++|||||+++=..|-.|.....
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 01122333333333333 6899999887 57666777889999999999999998888866554433
Q ss_pred ------HHHhHHHHHHHHHhcCcEEEEEec
Q 010274 327 ------NRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 327 ------~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
..-.++++..++++.||+++..+.
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 223689999999999999987665
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.2e-06 Score=83.84 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=67.6
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCC-C-----CCCCCceE
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-----YPSRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~l-p-----~~~~sFDl 282 (514)
.++|||||||+|..+..|+. ..++++|+++.....+..++ .+.+. .+.+..+|+.+. + .+.++||+
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~-~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFI-KKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 46899999999987776652 46889988887665555333 33343 467777776442 1 12468999
Q ss_pred EEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 283 V~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
|+.... .+....++..+.++|||||.+++..
T Consensus 148 VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 148 AFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 985431 2334568999999999999988744
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.7e-06 Score=97.04 Aligned_cols=123 Identities=13% Similarity=0.130 Sum_probs=82.8
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHc--------------C--CCeEEEeecCCCCCC
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALER--------------G--IPSTLGVLGTKRLPY 275 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~r--------------g--~~~~~~~~d~~~lp~ 275 (514)
..+|||+|||+|.++..++. ..|+++|+++..+..+..+..... . .++.+..+|.....-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 35799999999999999874 368999999988877775554421 0 146788888654321
Q ss_pred C-CCCceEEEeccccc-------------cc------------c--------cch----HHHHHHHHhhCCCCeEEEEEe
Q 010274 276 P-SRSFELAHCSRCRI-------------DW------------L--------QRD----GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 276 ~-~~sFDlV~~s~~~l-------------~~------------~--------~d~----~~lL~el~RvLrPGG~lvis~ 317 (514)
. ...||+|+++---+ ++ . .+. ..++.++.++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 13699999852100 00 0 111 457888889999999999855
Q ss_pred CCCCCCChhHHHhHHHHH-HHHHhcCcEEEE
Q 010274 318 PEAYAHDPENRRIWNAMY-DLLKSMCWKIVS 347 (514)
Q Consensus 318 P~~~~~~~e~~~~~~~l~-~ll~~~Gf~~v~ 347 (514)
-.. .-+.+. +++++.||+.+.
T Consensus 279 G~~---------q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 279 GGR---------PGQAVCERLFERRGFRITK 300 (1082)
T ss_pred Ccc---------HHHHHHHHHHHHCCCCeeE
Confidence 211 124677 689999997654
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.1e-06 Score=84.48 Aligned_cols=98 Identities=19% Similarity=0.307 Sum_probs=63.1
Q ss_pred ccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--Ce
Q 010274 190 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PS 263 (514)
Q Consensus 190 ~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~--~~ 263 (514)
++...|+..+.+++........+.+...++||||||+|.+...|+. ..++++|+++..+..++.+.+...+. .+
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 3467788888888764322122233456899999999988777763 46889999988887777655554123 34
Q ss_pred EEEe-ecCCCCC----CCCCCceEEEecc
Q 010274 264 TLGV-LGTKRLP----YPSRSFELAHCSR 287 (514)
Q Consensus 264 ~~~~-~d~~~lp----~~~~sFDlV~~s~ 287 (514)
.+.. .+...+. .+++.||+|+|+-
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNP 197 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNP 197 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCC
Confidence 4432 2222221 2456899999975
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=83.38 Aligned_cols=138 Identities=17% Similarity=0.209 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHh--cCCCccccCChhhhhHHHHHHHHHcCCCeEEEee-c
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVL-G 269 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La--~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~-d 269 (514)
.++.+.+.++... ..+..|||==||||++..... +..++|.|++..++..+..++-.-+-.+..+... |
T Consensus 183 P~lAR~mVNLa~v--------~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~D 254 (347)
T COG1041 183 PRLARAMVNLARV--------KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLD 254 (347)
T ss_pred HHHHHHHHHHhcc--------ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecc
Confidence 3445555555543 223579999999999877653 6778888777666655554443332223434444 9
Q ss_pred CCCCCCCCCCceEEEecc-----ccccc--ccc-hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc
Q 010274 270 TKRLPYPSRSFELAHCSR-----CRIDW--LQR-DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 341 (514)
Q Consensus 270 ~~~lp~~~~sFDlV~~s~-----~~l~~--~~d-~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~ 341 (514)
+..+|+++++||.|+|-. ....- +.+ ...+|+.+.++|++||++++..|.. -...+...
T Consensus 255 a~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~-------------~~~~~~~~ 321 (347)
T COG1041 255 ATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRD-------------PRHELEEL 321 (347)
T ss_pred cccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCc-------------chhhHhhc
Confidence 999999988999999831 00111 111 2569999999999999999988722 12456788
Q ss_pred CcEEEEEecc
Q 010274 342 CWKIVSKKDQ 351 (514)
Q Consensus 342 Gf~~v~~~~~ 351 (514)
+|+++....+
T Consensus 322 ~f~v~~~~~~ 331 (347)
T COG1041 322 GFKVLGRFTM 331 (347)
T ss_pred CceEEEEEEE
Confidence 9988865544
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.3e-06 Score=83.28 Aligned_cols=98 Identities=18% Similarity=0.278 Sum_probs=77.4
Q ss_pred eEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCC---CCCCCCceEEEecccc
Q 010274 218 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL---PYPSRSFELAHCSRCR 289 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~l---p~~~~sFDlV~~s~~~ 289 (514)
.+||||||.|.+...+|. ..++|+++...-+..+. +.+.+.++ ++.+...|+..+ -+++++.|-|+..+.
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l-~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP- 128 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKAL-KKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP- 128 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHH-HHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-
Confidence 699999999999999994 47889999887666555 67777788 888888886543 245569999997763
Q ss_pred cccccch--------HHHHHHHHhhCCCCeEEEEEe
Q 010274 290 IDWLQRD--------GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 290 l~~~~d~--------~~lL~el~RvLrPGG~lvis~ 317 (514)
-+|.... ..+++.+.++|+|||.|.+.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 5554322 459999999999999999976
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.23 E-value=3e-06 Score=81.81 Aligned_cols=104 Identities=20% Similarity=0.374 Sum_probs=59.1
Q ss_pred CCCeEEEECCCCc----hHHHHHhc--CCCc--cccCChhhhhHHHHHHHHHc-----------------------C---
Q 010274 215 NIRNVLDVGCGVA----SFGAYLLS--HDII--AMSLAPNDVHENQIQFALER-----------------------G--- 260 (514)
Q Consensus 215 ~~~~VLDIGCGtG----~~a~~La~--~~V~--gvdis~~dis~a~~~~A~~r-----------------------g--- 260 (514)
+.-+|+..||++| +++..|.+ .... -+.|.+.|++...++.|++. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4468999999999 34444443 1111 34555556666666666542 1
Q ss_pred -------CCeEEEeecCCCCCCCCCCceEEEecccccccccch--HHHHHHHHhhCCCCeEEEEEeCC
Q 010274 261 -------IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 261 -------~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~ 319 (514)
..+.|...++.+.+.+.+.||+|+|.+. +-|.... ..++..+++.|+|||+|++....
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNV-lIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNV-LIYFDPETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SS-GGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCE-EEEeCHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 1256777776663334578999999995 4455443 66999999999999999996543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.9e-06 Score=87.52 Aligned_cols=103 Identities=14% Similarity=0.138 Sum_probs=70.1
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC---CeEEEeecCCCCC--C--CCCCceEEEe
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRLP--Y--PSRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~---~~~~~~~d~~~lp--~--~~~sFDlV~~ 285 (514)
.++|||+|||+|.++..++. ..|+++|+++..+..+..+.+. .+. ++.+..+|+...- + ..++||+|++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~-Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL-NKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 36899999999999877552 2689999998888776644443 343 4678888865431 1 2468999997
Q ss_pred ccccccc--------ccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 286 SRCRIDW--------LQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 286 s~~~l~~--------~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
.--.+.- ..+...++..+.++|+|||.|+..+-.
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 6321110 012344666788999999999986644
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.21 E-value=1e-05 Score=79.90 Aligned_cols=119 Identities=19% Similarity=0.197 Sum_probs=72.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeE-EEeecCCCC-----CCCCCCceEEEe
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKRL-----PYPSRSFELAHC 285 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~~~~-~~~~d~~~l-----p~~~~sFDlV~~ 285 (514)
+.++|||+|||+|.|+..+++. .|+++|++..++.... .....+. +...++..+ +..-..||++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l-----~~~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKL-----RQDERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHH-----hcCCCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 3468999999999999999854 5788888776554422 2222221 222233322 212236787776
Q ss_pred cccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCC------------Chh-HHHhHHHHHHHHHhcCcEEEEE
Q 010274 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH------------DPE-NRRIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 286 s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~------------~~e-~~~~~~~l~~ll~~~Gf~~v~~ 348 (514)
|.. ..|..+.++|+| |.+++-.-+.+.- +.. ..+..+++...+.+.||.+...
T Consensus 150 S~~---------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (228)
T TIGR00478 150 SLI---------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKI 215 (228)
T ss_pred ehH---------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeE
Confidence 653 258899999999 8777544333221 111 1223456777788889987653
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.5e-06 Score=83.31 Aligned_cols=95 Identities=22% Similarity=0.263 Sum_probs=67.7
Q ss_pred CCCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 214 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
...++|||||+|+|.++..++.+ .++..|+ +..++.+++ ..++.+..+|.. -++|. +|+++.++.+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl------p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vL 168 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL------PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVL 168 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-------HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc------Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhh
Confidence 34578999999999999999853 3444443 223344444 667889988877 66774 9999999965
Q ss_pred cccccch-HHHHHHHHhhCCCC--eEEEEEeC
Q 010274 290 IDWLQRD-GILLLELDRLLRPG--GYFVYSSP 318 (514)
Q Consensus 290 l~~~~d~-~~lL~el~RvLrPG--G~lvis~P 318 (514)
++|.++. ..+|+++++.|+|| |+|+|.++
T Consensus 169 h~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 169 HDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 5554433 56999999999999 99998764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.4e-05 Score=85.95 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=78.8
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC----CCCCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR----LPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~----lp~~~~sFDlV~~s~~~l 290 (514)
.+|||+|||+|.++..|+. ..|+++|+++.++..+..+.....-.++.+..+|+.+ +++.+++||+|++.-..
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr- 372 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPR- 372 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCC-
Confidence 5899999999999999985 4688999988887766644333322367888888654 22345679999964321
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
..-...++..+.+ ++|++.++++..+. .+..-.+.+.+.||++...+..
T Consensus 373 --~G~~~~~l~~l~~-l~~~~ivyvsc~p~---------tlard~~~l~~~gy~~~~~~~~ 421 (431)
T TIGR00479 373 --KGCAAEVLRTIIE-LKPERIVYVSCNPA---------TLARDLEFLCKEGYGITWVQPV 421 (431)
T ss_pred --CCCCHHHHHHHHh-cCCCEEEEEcCCHH---------HHHHHHHHHHHCCeeEEEEEEe
Confidence 1112446666554 89999888764221 1222234456678987665543
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=5e-06 Score=82.16 Aligned_cols=90 Identities=11% Similarity=0.160 Sum_probs=60.8
Q ss_pred CeEEEECCCCchHHHHHhcC-------CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH-------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~-------~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
.+|||+|||+|.++..++.. .|+++|+++ .+.+.|++....+.+...|+...++ +++||+|+++--.
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~-----~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY 124 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNH-----TYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPF 124 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCH-----HHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCC
Confidence 58999999999999987642 455665554 4556666555567788888776654 4689999986321
Q ss_pred cc-----c------ccchHHHHHHHHhhCCCCeE
Q 010274 290 ID-----W------LQRDGILLLELDRLLRPGGY 312 (514)
Q Consensus 290 l~-----~------~~d~~~lL~el~RvLrPGG~ 312 (514)
.. . ..-...++..+.+++++|+.
T Consensus 125 ~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 125 GKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 10 0 01124588888898888876
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.8e-05 Score=79.03 Aligned_cols=120 Identities=17% Similarity=0.237 Sum_probs=81.9
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCC---CCCceEEEe
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYP---SRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~---~~sFDlV~~ 285 (514)
+.+|||.|.|+|+++.+|+. ..|...|+...-...+..++.. .+. .+.+...|+....|. +..||.|+
T Consensus 41 G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~-~gl~~~v~~~~~Dv~~~g~~~~~~~~~Davf- 118 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER-HGLDDNVTVHHRDVCEEGFDEELESDFDAVF- 118 (247)
T ss_dssp T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-TTCCTTEEEEES-GGCG--STT-TTSEEEEE-
T ss_pred CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH-cCCCCCceeEecceecccccccccCcccEEE-
Confidence 46899999999999999983 3677787776555555544433 343 467888887544442 36799998
Q ss_pred cccccccccchHHHHHHHHhhC-CCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 286 SRCRIDWLQRDGILLLELDRLL-RPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 286 s~~~l~~~~d~~~lL~el~RvL-rPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+. +++|..++..+.++| ||||++++-.|.. .+-.+....+++.||..+....
T Consensus 119 ----LD-lp~Pw~~i~~~~~~L~~~gG~i~~fsP~i--------eQv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 119 ----LD-LPDPWEAIPHAKRALKKPGGRICCFSPCI--------EQVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp ----EE-SSSGGGGHHHHHHHE-EEEEEEEEEESSH--------HHHHHHHHHHHHTTEEEEEEEE
T ss_pred ----Ee-CCCHHHHHHHHHHHHhcCCceEEEECCCH--------HHHHHHHHHHHHCCCeeeEEEE
Confidence 22 577888999999999 8999999987753 2234555667788998775433
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.1e-05 Score=81.29 Aligned_cols=120 Identities=16% Similarity=0.157 Sum_probs=77.9
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCC-CCCCceEEEeccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY-PSRSFELAHCSRCRIDW 292 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~-~~~sFDlV~~s~~~l~~ 292 (514)
.+|||+|||+|.++..++. ..|+++|+++.++..+. +.++..+. ++.+..+|+..+.. ..+.||+|++.-- .
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP---r 250 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP---R 250 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC---C
Confidence 5899999999999999985 46889999888877665 34444454 57888888766532 2357999996531 1
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecce
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQT 352 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (514)
. .....+.++...++|++.++++..+.- . -+.+..+ .||++...+...
T Consensus 251 ~-G~~~~~~~~l~~~~~~~ivyvsc~p~t--~------~rd~~~l---~~y~~~~~~~~D 298 (315)
T PRK03522 251 R-GIGKELCDYLSQMAPRFILYSSCNAQT--M------AKDLAHL---PGYRIERVQLFD 298 (315)
T ss_pred C-CccHHHHHHHHHcCCCeEEEEECCccc--c------hhHHhhc---cCcEEEEEEEec
Confidence 1 112233344455788888888764321 1 1233333 488887766543
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.5e-05 Score=78.26 Aligned_cols=134 Identities=20% Similarity=0.221 Sum_probs=79.7
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHc------------CCCeEEEeecCCCCCCCC-CCc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER------------GIPSTLGVLGTKRLPYPS-RSF 280 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~r------------g~~~~~~~~d~~~lp~~~-~sF 280 (514)
..+||..|||.|.-..+|++ .+|+|+|+++..+..+..+..... ...+.+.++|...++-.. ++|
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~f 117 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKF 117 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSE
T ss_pred CCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCc
Confidence 35899999999999999995 467788777666544321111100 113467788887776433 479
Q ss_pred eEEEecccccccccc-hHHHHHHHHhhCCCCeEEEEEe---CCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 281 ELAHCSRCRIDWLQR-DGILLLELDRLLRPGGYFVYSS---PEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 281 DlV~~s~~~l~~~~d-~~~lL~el~RvLrPGG~lvis~---P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
|+|+=..++....++ -..+.+.+.++|+|||.+++.+ +......+...-.-+++.+++. .+|++...+.
T Consensus 118 D~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 118 DLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp EEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred eEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 999954322222233 3679999999999999954332 1110001111112257788888 7888776554
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.4e-05 Score=75.80 Aligned_cols=121 Identities=10% Similarity=-0.018 Sum_probs=74.9
Q ss_pred CCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHH-hc--CCCccccCChhhhhHHHHHHHHHcCC-Ce
Q 010274 188 FHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYL-LS--HDIIAMSLAPNDVHENQIQFALERGI-PS 263 (514)
Q Consensus 188 F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~L-a~--~~V~gvdis~~dis~a~~~~A~~rg~-~~ 263 (514)
+....+...+.+.+.+... ....+|||+|||+|.++..+ +. ..|+++|+++..+..+..+ ++..+. ++
T Consensus 33 ~Rp~~d~v~e~l~~~l~~~-------~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~N-l~~~~~~~v 104 (199)
T PRK10909 33 LRPTTDRVRETLFNWLAPV-------IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKN-LATLKAGNA 104 (199)
T ss_pred cCcCCHHHHHHHHHHHhhh-------cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHH-HHHhCCCcE
Confidence 3555666666566555321 12258999999999999864 43 4688888887766555433 333333 57
Q ss_pred EEEeecCCC-CCCCCCCceEEEecccccccccc-hHHHHHHHHh--hCCCCeEEEEEeCC
Q 010274 264 TLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQR-DGILLLELDR--LLRPGGYFVYSSPE 319 (514)
Q Consensus 264 ~~~~~d~~~-lp~~~~sFDlV~~s~~~l~~~~d-~~~lL~el~R--vLrPGG~lvis~P~ 319 (514)
.+...|... ++...++||+|++.-- |... ...++..+.. +|+|+|.+++..+.
T Consensus 105 ~~~~~D~~~~l~~~~~~fDlV~~DPP---y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 105 RVVNTNALSFLAQPGTPHNVVFVDPP---FRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EEEEchHHHHHhhcCCCceEEEECCC---CCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 777777544 2223457999997642 2222 2345555544 47999999997654
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.8e-05 Score=79.84 Aligned_cols=150 Identities=19% Similarity=0.318 Sum_probs=98.4
Q ss_pred HHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc------CCCccccCChhhhhHHHHHHHHHcCCC--eEEEeec
Q 010274 198 ALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS------HDIIAMSLAPNDVHENQIQFALERGIP--STLGVLG 269 (514)
Q Consensus 198 ~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~------~~V~gvdis~~dis~a~~~~A~~rg~~--~~~~~~d 269 (514)
++.+++......+...+.+-+||||.||.|........ ..|.-.|+++..+.... +.++++|.. +.|...|
T Consensus 118 ~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~d 196 (311)
T PF12147_consen 118 HLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGD 196 (311)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecC
Confidence 33344333222333445667899999999987665542 24556677776665555 566677764 3788888
Q ss_pred CCCCC-CC--CCCceEEEecccccccccch---HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHH---------HhH---
Q 010274 270 TKRLP-YP--SRSFELAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFVYSSPEAYAHDPENR---------RIW--- 331 (514)
Q Consensus 270 ~~~lp-~~--~~sFDlV~~s~~~l~~~~d~---~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~---------~~~--- 331 (514)
+.+.. +. +-..++++.+. +++..+|. ...|..+.+++.|||+++++..+.....+... +.|
T Consensus 197 Afd~~~l~~l~p~P~l~iVsG-L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMR 275 (311)
T PF12147_consen 197 AFDRDSLAALDPAPTLAIVSG-LYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMR 275 (311)
T ss_pred CCCHhHhhccCCCCCEEEEec-chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEE
Confidence 64431 11 23569999888 68888875 44789999999999999998854432221110 123
Q ss_pred ----HHHHHHHHhcCcEEEEEe
Q 010274 332 ----NAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 332 ----~~l~~ll~~~Gf~~v~~~ 349 (514)
.+|.++++.+||+.+...
T Consensus 276 rRsq~EmD~Lv~~aGF~K~~q~ 297 (311)
T PF12147_consen 276 RRSQAEMDQLVEAAGFEKIDQR 297 (311)
T ss_pred ecCHHHHHHHHHHcCCchhhhe
Confidence 589999999999866543
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.8e-05 Score=66.44 Aligned_cols=99 Identities=29% Similarity=0.435 Sum_probs=66.3
Q ss_pred EEEECCCCchHH--HHHhcC--CCccccCChhhhhHHHHHHHHHcCCC-eEEEeecCCC--CCCCC-CCceEEEeccccc
Q 010274 219 VLDVGCGVASFG--AYLLSH--DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKR--LPYPS-RSFELAHCSRCRI 290 (514)
Q Consensus 219 VLDIGCGtG~~a--~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~-~~~~~~d~~~--lp~~~-~sFDlV~~s~~~l 290 (514)
+||+|||+|... ..+... .++++|++...+......... .... +.+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999854 333332 456667666555442211111 2222 4566666555 77776 489999 666556
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
++.. ....+.++.++|+|+|.+++.....
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 5555 7789999999999999999987654
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.2e-05 Score=78.99 Aligned_cols=101 Identities=19% Similarity=0.401 Sum_probs=62.5
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHH----HcCCC-------------------------
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFAL----ERGIP------------------------- 262 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~----~rg~~------------------------- 262 (514)
+..+|||||-.|.++..++. +.|.|+||++.-+..|..+.-. +....
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 46799999999999999984 5788998887766444322100 00000
Q ss_pred ------eEEE----eec-CCCCCCCCCCceEEEecc----cccccccc-hHHHHHHHHhhCCCCeEEEEE
Q 010274 263 ------STLG----VLG-TKRLPYPSRSFELAHCSR----CRIDWLQR-DGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 263 ------~~~~----~~d-~~~lp~~~~sFDlV~~s~----~~l~~~~d-~~~lL~el~RvLrPGG~lvis 316 (514)
+.+. +.+ .+-+.+....||+|.|.. ..+.|.++ ...+|+.+.++|.|||+|++.
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0000 000 111223456799999853 12333333 366999999999999999983
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.4e-05 Score=85.97 Aligned_cols=122 Identities=18% Similarity=0.190 Sum_probs=82.8
Q ss_pred CCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCC--CCCCCCceEEEecc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL--PYPSRSFELAHCSR 287 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~l--p~~~~sFDlV~~s~ 287 (514)
....+||||||.|.+...+|. ..++|+|+...-+..+.. .+.+.+. ++.+...++..+ -++++++|.|+..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~-~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLK-LAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHH-HHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 346799999999999999984 578999998876666653 3444454 455555554322 26788999999776
Q ss_pred cccccccch--------HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcC-cEEE
Q 010274 288 CRIDWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIV 346 (514)
Q Consensus 288 ~~l~~~~d~--------~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~G-f~~v 346 (514)
--+|.... ..++..+.++|||||.+.+.+-. + ..++.+...+++.+ |+..
T Consensus 426 -PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~------~--~y~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 426 -PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI------E--NYFYEAIELIQQNGNFEII 484 (506)
T ss_pred -CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC------H--HHHHHHHHHHHhCCCeEec
Confidence 35554321 45999999999999999996632 1 12334455555544 6654
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.7e-05 Score=78.47 Aligned_cols=54 Identities=15% Similarity=0.337 Sum_probs=40.2
Q ss_pred eEEEeecCCCCCCC-CCCceEEEecccccccccc--hHHHHHHHHhhCCCCeEEEEEe
Q 010274 263 STLGVLGTKRLPYP-SRSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 263 ~~~~~~d~~~lp~~-~~sFDlV~~s~~~l~~~~d--~~~lL~el~RvLrPGG~lvis~ 317 (514)
+.|...|+...+++ .+.||+|+|.++ +.|... ...++..+.+.|+|||+|++..
T Consensus 206 V~F~~~NL~~~~~~~~~~fD~I~cRNv-liyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 206 VDFQQLNLLAKQWAVPGPFDAIFCRNV-MIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred CEEEcccCCCCCCccCCCcceeeHhhH-HhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 35666666554443 578999999885 445533 4679999999999999998855
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.8e-05 Score=74.87 Aligned_cols=102 Identities=20% Similarity=0.169 Sum_probs=59.1
Q ss_pred CCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcC----CCeEEEeecCCC-C--C-CCCCCceE
Q 010274 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERG----IPSTLGVLGTKR-L--P-YPSRSFEL 282 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg----~~~~~~~~d~~~-l--p-~~~~sFDl 282 (514)
..++|||+|||+|..+..++. ..|+..|..+ .-+.....++..+ ..+.+...+=.+ . . ...+.||+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 456899999999987777764 3677777765 2223323333322 234444433111 1 1 23468999
Q ss_pred EEecccccccccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 283 V~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
|+++.+ +........++.-+.++|+|+|.++++.+.
T Consensus 123 IlasDv-~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 123 ILASDV-LYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEEecc-cchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 999985 555566688999999999999998887654
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.2e-05 Score=79.67 Aligned_cols=96 Identities=15% Similarity=0.102 Sum_probs=68.1
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCC-CC-C----CCCCceE
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-Y----PSRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~-lp-~----~~~sFDl 282 (514)
+++|||||+|+|..+.+++. ..++++|.++.....+...+ ++.|. .+.+..+++.+ ++ + ..++||+
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~-~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYY-ELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 46899999999999999884 25788888886665555333 34454 46777777533 22 1 1368999
Q ss_pred EEecccccccccchHHHHHHHHhhCCCCeEEEEE
Q 010274 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 283 V~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis 316 (514)
|+.-. .-.+...++..+.++|+|||.+++-
T Consensus 198 VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 198 AFVDA----DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEECC----CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 99443 2344567899999999999999874
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.5e-05 Score=76.46 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=67.6
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCC--eEEEe-ecCCC-CC-CCCCCceEEEe
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIP--STLGV-LGTKR-LP-YPSRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~--~~~~~-~d~~~-lp-~~~~sFDlV~~ 285 (514)
+++|||||.+.|.-+.+|+. ..++++|+++.....+..++++. |.. +.... +|+.+ +. ...++||+|+.
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a-g~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA-GVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc-CCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 46899999999999999983 35788888887776666444433 432 44444 35322 22 34589999983
Q ss_pred cccccccccchHHHHHHHHhhCCCCeEEEEE
Q 010274 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 286 s~~~l~~~~d~~~lL~el~RvLrPGG~lvis 316 (514)
-. .-.+...++..+.++|||||.+++-
T Consensus 139 Da----dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 139 DA----DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred eC----ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 32 3445577999999999999999974
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.4e-05 Score=78.06 Aligned_cols=132 Identities=17% Similarity=0.208 Sum_probs=85.3
Q ss_pred CCCeEEEECCCCchHHHHHhc--C-CCccccCChhhhhHHHHHHHHHcC---CCeEEEeecCCCC--CCCCCCceEEEec
Q 010274 215 NIRNVLDVGCGVASFGAYLLS--H-DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRL--PYPSRSFELAHCS 286 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~--~-~V~gvdis~~dis~a~~~~A~~rg---~~~~~~~~d~~~l--p~~~~sFDlV~~s 286 (514)
.+.+|||...|-|.+++..++ + .|+.++.+++-+.-+.++= -.++ ..+.++.+|+.+. .|+|.+||+|+--
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNP-wSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNP-WSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCC-CCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 346899999999999988774 3 6777777766553222210 0111 1356777775543 4788999999853
Q ss_pred ccccccccc--hHHHHHHHHhhCCCCeEEEEEe--CCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 287 RCRIDWLQR--DGILLLELDRLLRPGGYFVYSS--PEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 287 ~~~l~~~~d--~~~lL~el~RvLrPGG~lvis~--P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
--.+.+... -+.+.+|++|+|||||.++--+ |..-.+.. .....+.+.++++||.++....
T Consensus 213 PPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~---d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 213 PPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGL---DLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred CCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccC---ChhHHHHHHHHhcCceeeeeeh
Confidence 322222222 2669999999999999998533 33211111 2245788899999999776544
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.2e-05 Score=75.28 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=67.7
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCC-CC-----CCCCCceE
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-----YPSRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~-lp-----~~~~sFDl 282 (514)
+++||||||++|.-+.+|+. ..|+++|+++.....+. +..++.|. .+.+..+++.+ ++ ...++||+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~-~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR-ENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH-HHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH-HHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 36899999999999999983 46888888886554444 34444443 56777777543 12 12358999
Q ss_pred EEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 283 V~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
|+.-. .-.+...++..+.++|+|||.+++-.
T Consensus 125 VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 99443 23445678889999999999999854
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.91 E-value=9.5e-05 Score=78.33 Aligned_cols=120 Identities=15% Similarity=0.129 Sum_probs=78.0
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCC-CCCCCceEEEeccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp-~~~~sFDlV~~s~~~l~~ 292 (514)
.+|||+|||+|.++..++. ..|+++|+++..+..+.. .++..+. ++.+..+|+.... ....+||+|++.-- .
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~-N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP---r 310 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQ-SAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP---R 310 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHH-HHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC---C
Confidence 5799999999999999884 468899999888766663 3444444 6788888865432 11246999986532 2
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecce
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQT 352 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (514)
..-...++..+. .++|++.++++..+.- .-+.+..+ .||++...+...
T Consensus 311 ~G~~~~~l~~l~-~~~p~~ivyvsc~p~T--------laRDl~~L---~gy~l~~~~~~D 358 (374)
T TIGR02085 311 RGIGKELCDYLS-QMAPKFILYSSCNAQT--------MAKDIAEL---SGYQIERVQLFD 358 (374)
T ss_pred CCCcHHHHHHHH-hcCCCeEEEEEeCHHH--------HHHHHHHh---cCceEEEEEEec
Confidence 111234555554 4799999998763321 12344444 589887766543
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.2e-05 Score=82.58 Aligned_cols=97 Identities=19% Similarity=0.297 Sum_probs=78.4
Q ss_pred eEEEECCCCchHHHHHh---cCCCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 218 NVLDVGCGVASFGAYLL---SHDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La---~~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
.++|+|||.|....+++ ..++++++.++..............- ....++..+....|+++++||.+.+.. +..|.
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld-~~~~~ 191 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE-VVCHA 191 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe-ecccC
Confidence 69999999999888877 46788888888777666543333221 123447778889999999999999887 68899
Q ss_pred cchHHHHHHHHhhCCCCeEEEE
Q 010274 294 QRDGILLLELDRLLRPGGYFVY 315 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~lvi 315 (514)
++...++.|+.|+++|||+++.
T Consensus 192 ~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 192 PDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred CcHHHHHHHHhcccCCCceEEe
Confidence 9999999999999999999997
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.6e-05 Score=74.20 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=73.0
Q ss_pred cHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHh----cCCCccccCChhhhhHHHHHHHHHcCCC--eE
Q 010274 191 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGIP--ST 264 (514)
Q Consensus 191 ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La----~~~V~gvdis~~dis~a~~~~A~~rg~~--~~ 264 (514)
..+.+.+.+.+.++.... .+...+||+|||+|.++..|+ +..|+++|++..++.-+.. .|+..+.. +.
T Consensus 129 ETEE~V~~Vid~~~~~~~-----~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~e-N~qr~~l~g~i~ 202 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEH-----SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKE-NAQRLKLSGRIE 202 (328)
T ss_pred cHHHHHHHHHHHHhhhhh-----cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHH-HHHHHhhcCceE
Confidence 345666666666553321 223479999999999998887 3567888887777655543 33332222 22
Q ss_pred EE----eec-CCCCCCCCCCceEEEecccccccc-------------------------cchHHHHHHHHhhCCCCeEEE
Q 010274 265 LG----VLG-TKRLPYPSRSFELAHCSRCRIDWL-------------------------QRDGILLLELDRLLRPGGYFV 314 (514)
Q Consensus 265 ~~----~~d-~~~lp~~~~sFDlV~~s~~~l~~~-------------------------~d~~~lL~el~RvLrPGG~lv 314 (514)
+. ..+ ....+...+++|+++|+---+..- .....++.-+.|.|+|||.++
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred EEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 22 112 223345568999999853111100 011225667789999999999
Q ss_pred EEeC
Q 010274 315 YSSP 318 (514)
Q Consensus 315 is~P 318 (514)
+..-
T Consensus 283 le~~ 286 (328)
T KOG2904|consen 283 LELV 286 (328)
T ss_pred EEec
Confidence 8664
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.83 E-value=7.7e-05 Score=75.36 Aligned_cols=103 Identities=15% Similarity=0.244 Sum_probs=64.7
Q ss_pred CCCeEEEECCCCc----hHHHHHhcCCC----ccccCChhhhhHHHHHHHHHc---------CC----------------
Q 010274 215 NIRNVLDVGCGVA----SFGAYLLSHDI----IAMSLAPNDVHENQIQFALER---------GI---------------- 261 (514)
Q Consensus 215 ~~~~VLDIGCGtG----~~a~~La~~~V----~gvdis~~dis~a~~~~A~~r---------g~---------------- 261 (514)
+.-+|.-+||+|| +++..|.+... ..+.|.+.|++...++.|+.. ++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3568999999999 44444443211 134445555555555555432 11
Q ss_pred ---------CeEEEeecCCCCCCCCCCceEEEecccccccccch--HHHHHHHHhhCCCCeEEEEEeC
Q 010274 262 ---------PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 262 ---------~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P 318 (514)
.+.|...|....++..+.||+|+|-+. +-|...+ ..++..++..|+|||+|++-..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNV-LIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNV-LIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcce-EEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 134444454333424467999999995 5555443 5699999999999999999543
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=1.9e-05 Score=79.35 Aligned_cols=98 Identities=28% Similarity=0.252 Sum_probs=69.2
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d 295 (514)
...+||+|||.|-.+..=-...+++.|+ +...+..++..+.. ....+|+..+|+.+.+||.+++.. ++||+..
T Consensus 46 gsv~~d~gCGngky~~~~p~~~~ig~D~-----c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsia-vihhlsT 118 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVNPLCLIIGCDL-----CTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIA-VIHHLST 118 (293)
T ss_pred cceeeecccCCcccCcCCCcceeeecch-----hhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhh-hhhhhhh
Confidence 3569999999996643211223445544 44444555554443 566788999999999999999766 6777754
Q ss_pred h---HHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 296 D---GILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 296 ~---~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
. ..+++|+.|+|||||...+.....
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 4 559999999999999988766443
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.8e-05 Score=82.29 Aligned_cols=95 Identities=22% Similarity=0.292 Sum_probs=61.3
Q ss_pred CCeEEEECCCCchHHHHHhc--------CCCccccCChhhhhHHHHHHHHHc--CCCeEEEeecCCCCCCCCCCceEEEe
Q 010274 216 IRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--------~~V~gvdis~~dis~a~~~~A~~r--g~~~~~~~~d~~~lp~~~~sFDlV~~ 285 (514)
...|||||||+|.++...+. ..|.+++-++......+ +..+.. +..+.++.+|++++..+ .+.|+|++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGDKVTVIHGDMREVELP-EKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEE
Confidence 46799999999988755442 36778887776553333 222333 34688999999988876 48999996
Q ss_pred cccccccccc---hHHHHHHHHhhCCCCeEEE
Q 010274 286 SRCRIDWLQR---DGILLLELDRLLRPGGYFV 314 (514)
Q Consensus 286 s~~~l~~~~d---~~~lL~el~RvLrPGG~lv 314 (514)
-. +....+ ..+.|....|.|||||.++
T Consensus 265 El--LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 EL--LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ec--cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 32 222211 1347888999999999887
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.2e-05 Score=78.95 Aligned_cols=96 Identities=17% Similarity=0.289 Sum_probs=65.3
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCC--eEEEeecCCCCCCCCCCceEEEecc---
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSR--- 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~--~~~~~~d~~~lp~~~~sFDlV~~s~--- 287 (514)
.++|||||||+|.++..-+. +.|.++|.+.. ..-..+.++..+.. +.+..+.++++.+|..+.|+|++-.
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~i--a~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSI--ADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHH--HHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 46899999999998887764 46888887754 34444666666654 4556666666655567999999632
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEE
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFV 314 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lv 314 (514)
+++ +-.-.+.+|-.=.+.|+|||.++
T Consensus 139 ~Ll-~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLL-YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHH-HhhhhhhhhhhhhhccCCCceEc
Confidence 111 11112445666679999999987
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.66 E-value=8.8e-05 Score=70.62 Aligned_cols=119 Identities=15% Similarity=0.096 Sum_probs=76.8
Q ss_pred CCCeEEEECCCCchHHHHHh--c-CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLL--S-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La--~-~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..++|+|+|||||.++...+ + +.|+++|+++..+..+. +.+.+.+..+.+...|+.+.. ..||.++.+--.-.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r-~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIAR-ANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHH-HHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 34689999999998766544 4 67999999997765444 555556667899998887765 56898887532111
Q ss_pred ccc-chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 292 WLQ-RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 292 ~~~-d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
+.. ....+|....++- ..+.+....- ..+-+++..+.+|+.+....
T Consensus 121 ~~rhaDr~Fl~~Ale~s----~vVYsiH~a~--------~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 121 QRRHADRPFLLKALEIS----DVVYSIHKAG--------SRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred ccccCCHHHHHHHHHhh----heEEEeeccc--------cHHHHHHHHHhcCCeEEEEE
Confidence 111 1234666665554 3444432221 23456788999998776554
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00015 Score=72.94 Aligned_cols=68 Identities=15% Similarity=0.105 Sum_probs=48.6
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~ 287 (514)
..+|||||||+|.++..|+.. .++++|+++..+........ . ..++.+..+|+..++++ .||.|+++.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~-~-~~~v~ii~~D~~~~~~~--~~d~Vv~Nl 99 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEI-A-AGNVEIIEGDALKVDLP--EFNKVVSNL 99 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhc-c-CCCEEEEEeccccCCch--hceEEEEcC
Confidence 368999999999999999863 57777776655544332221 1 23578888898887765 489999764
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.62 E-value=9.4e-05 Score=73.97 Aligned_cols=95 Identities=14% Similarity=0.058 Sum_probs=64.6
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCC-CCC------CCCCce
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKR-LPY------PSRSFE 281 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~-lp~------~~~sFD 281 (514)
.++|||||+++|.-+.+|+. ..++++|..+.....+...+ .+.| ..+.+..+++.+ ++- ..++||
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~-~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVI-QKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHH-HHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 46899999999999888873 36888888775544444333 3334 346777776433 221 136899
Q ss_pred EEEecccccccccchHHHHHHHHhhCCCCeEEEE
Q 010274 282 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 315 (514)
Q Consensus 282 lV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvi 315 (514)
+|+.-. .-.....++..+.++|+|||.+++
T Consensus 159 ~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 159 FIFVDA----DKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEEecC----CHHHhHHHHHHHHHhcCCCeEEEE
Confidence 999543 233345688888999999999886
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00069 Score=64.86 Aligned_cols=142 Identities=19% Similarity=0.216 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHh----cCCCccccCChhhhhHHHHHHHHHcCCC-eEEEe
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGIP-STLGV 267 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La----~~~V~gvdis~~dis~a~~~~A~~rg~~-~~~~~ 267 (514)
+-+.+++.+.+.... .+.... .+++|||+|.|.=+..|+ +.+++-+|-...-.+ -..+.+.+-+.. +.+..
T Consensus 29 ~~~~~Hi~DSL~~~~-~~~~~~--~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~-FL~~~~~~L~L~nv~v~~ 104 (184)
T PF02527_consen 29 EIWERHILDSLALLP-FLPDFG--KKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVA-FLKEVVRELGLSNVEVIN 104 (184)
T ss_dssp HHHHHHHHHHHGGGG-CS-CCC--SEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHH-HHHHHHHHHT-SSEEEEE
T ss_pred HHHHHHHHHHHHhhh-hhccCC--ceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHH-HHHHHHHHhCCCCEEEEE
Confidence 444556665554322 122222 279999999997766665 345666666554321 122334444654 77777
Q ss_pred ecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEE
Q 010274 268 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 268 ~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~ 347 (514)
..++. +....+||+|++.. +.....++.-+.+.|++||.+++--- +.......+.....+..+.+...
T Consensus 105 ~R~E~-~~~~~~fd~v~aRA-----v~~l~~l~~~~~~~l~~~G~~l~~KG------~~~~~El~~~~~~~~~~~~~~~~ 172 (184)
T PF02527_consen 105 GRAEE-PEYRESFDVVTARA-----VAPLDKLLELARPLLKPGGRLLAYKG------PDAEEELEEAKKAWKKLGLKVLS 172 (184)
T ss_dssp S-HHH-TTTTT-EEEEEEES-----SSSHHHHHHHHGGGEEEEEEEEEEES------S--HHHHHTHHHHHHCCCEEEEE
T ss_pred eeecc-cccCCCccEEEeeh-----hcCHHHHHHHHHHhcCCCCEEEEEcC------CChHHHHHHHHhHHHHhCCEEee
Confidence 77776 44557899999543 23456788999999999999887431 11122344566677777777665
Q ss_pred Eec
Q 010274 348 KKD 350 (514)
Q Consensus 348 ~~~ 350 (514)
...
T Consensus 173 v~~ 175 (184)
T PF02527_consen 173 VPE 175 (184)
T ss_dssp EEE
T ss_pred ecc
Confidence 443
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00013 Score=73.81 Aligned_cols=67 Identities=16% Similarity=0.113 Sum_probs=47.8
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEec
Q 010274 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCS 286 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s 286 (514)
.+|||||||+|.++..|++. .|+++|+++.++.....+.. ..++.+..+|+..+++++..+|.|+++
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHHHcCcceEEEe
Confidence 57999999999999999853 67788777665544432211 246788899988887764335888855
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00038 Score=65.07 Aligned_cols=101 Identities=16% Similarity=0.067 Sum_probs=75.2
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC-----CCCCCceEEEecccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----YPSRSFELAHCSRCRID 291 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp-----~~~~sFDlV~~s~~~l~ 291 (514)
.-|||+|.|||-++..++.+.+---++...+.+........++...+.++.+|+..+. +.+..||.|+|..-++.
T Consensus 50 lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~ 129 (194)
T COG3963 50 LPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLN 129 (194)
T ss_pred CeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecccccc
Confidence 4699999999999999997655555555556666666666666667778888876654 45678999998765555
Q ss_pred cccch-HHHHHHHHhhCCCCeEEEEEe
Q 010274 292 WLQRD-GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 292 ~~~d~-~~lL~el~RvLrPGG~lvis~ 317 (514)
..... -++|+++...|++||-++-.+
T Consensus 130 ~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 130 FPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred CcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 44333 468999999999999998644
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0003 Score=66.96 Aligned_cols=121 Identities=20% Similarity=0.212 Sum_probs=76.0
Q ss_pred CCeEEEECCCCchHHHHHh--cCCCc-----------cccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCc
Q 010274 216 IRNVLDVGCGVASFGAYLL--SHDII-----------AMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSF 280 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La--~~~V~-----------gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sF 280 (514)
...+||--||+|++....+ ...+. |.|+++..+..+..+ +...+. .+.+.+.|+.++++.++++
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N-~~~ag~~~~i~~~~~D~~~l~~~~~~~ 107 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAREN-LKAAGVEDYIDFIQWDARELPLPDGSV 107 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHH-HHHTT-CGGEEEEE--GGGGGGTTSBS
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHH-HHhcccCCceEEEecchhhcccccCCC
Confidence 3579999999999986654 33444 888888887666644 344444 3678888999999777899
Q ss_pred eEEEecccccccccc---h----HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 281 ELAHCSRCRIDWLQR---D----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 281 DlV~~s~~~l~~~~d---~----~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
|.|++.--.-.-... . ..+++++.++|++...++++.. ..+.+.++..+|+......
T Consensus 108 d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~-------------~~~~~~~~~~~~~~~~~~~ 171 (179)
T PF01170_consen 108 DAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSN-------------RELEKALGLKGWRKRKLYN 171 (179)
T ss_dssp CEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESC-------------CCHHHHHTSTTSEEEEEEE
T ss_pred CEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC-------------HHHHHHhcchhhceEEEEE
Confidence 999985310000111 1 3478999999999444444331 1346677777887766544
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00071 Score=65.39 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=60.9
Q ss_pred CeEEEECCCCchHHHHHh---c---CCCccccCChhhhhHHHHHHHHH----------cCCCeEEEeecCCCCCCCCCCc
Q 010274 217 RNVLDVGCGVASFGAYLL---S---HDIIAMSLAPNDVHENQIQFALE----------RGIPSTLGVLGTKRLPYPSRSF 280 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La---~---~~V~gvdis~~dis~a~~~~A~~----------rg~~~~~~~~d~~~lp~~~~sF 280 (514)
.+.||||.|+|.++..++ . ..+.|+|..+.-+..+..+.-+. ......++++|.....-+...|
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~Y 163 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPY 163 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCc
Confidence 469999999999888776 1 22356665543332221111100 0124577888887776677899
Q ss_pred eEEEecccccccccchHHHHHHHHhhCCCCeEEEEE
Q 010274 281 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 281 DlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis 316 (514)
|.|||..++ ....+++...|++||.+++-
T Consensus 164 DaIhvGAaa-------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 164 DAIHVGAAA-------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ceEEEccCc-------cccHHHHHHhhccCCeEEEe
Confidence 999987532 24677888889999999983
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00082 Score=70.20 Aligned_cols=97 Identities=19% Similarity=0.206 Sum_probs=63.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHc---------CCCeEEEeecCCC-CCCCCCCc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKR-LPYPSRSF 280 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~r---------g~~~~~~~~d~~~-lp~~~~sF 280 (514)
.+++||.||+|.|..+..++.. .|+.+|+++..+ +.|++. ..++.+...|... +...+++|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv-----~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~y 177 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVV-----DFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKF 177 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHH-----HHHHHhcccccccccCCceEEEEChhHHHHhhCCCCc
Confidence 4578999999999999887753 356666655444 444432 2356677777543 23345789
Q ss_pred eEEEecccccccc---c---chHHHHH-HHHhhCCCCeEEEEEe
Q 010274 281 ELAHCSRCRIDWL---Q---RDGILLL-ELDRLLRPGGYFVYSS 317 (514)
Q Consensus 281 DlV~~s~~~l~~~---~---d~~~lL~-el~RvLrPGG~lvis~ 317 (514)
|+|++-. .-... + -..++++ .+.+.|+|||.+++-.
T Consensus 178 DvIi~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 178 DVIIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cEEEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999652 11110 0 1245777 8999999999998743
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00029 Score=74.83 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=67.8
Q ss_pred CeEEEECCCCchHHHHHhc-C---CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS-H---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-~---~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
.+|||++||+|.++..++. . .|+++|+++..+..+..+.....-....+...|+..+....+.||+|+..- +
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP----~ 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP----F 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----C
Confidence 4799999999999999863 2 588898888777655544333322234567777654322145799998542 1
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
..+..++..+.+.+++||.+.++..
T Consensus 135 -Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 135 -GSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred -CCcHHHHHHHHHHhcCCCEEEEEec
Confidence 3345688888888999999999864
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00055 Score=66.39 Aligned_cols=126 Identities=16% Similarity=0.117 Sum_probs=78.4
Q ss_pred eeccCceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc----CCCccccCChhh
Q 010274 172 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPND 247 (514)
Q Consensus 172 v~~~g~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~d 247 (514)
.++.|-.+.++-....|..+...-...+.+.+. ...+|||+-||.|.|+..++. ..|.++|+.|..
T Consensus 68 ~~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~----------~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a 137 (200)
T PF02475_consen 68 HKENGIRFKVDLSKVYFSPRLSTERRRIANLVK----------PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDA 137 (200)
T ss_dssp EEETTEEEEEETTTS---GGGHHHHHHHHTC------------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHH
T ss_pred EEeCCEEEEEccceEEEccccHHHHHHHHhcCC----------cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHH
Confidence 456666777776777788776655555554432 235899999999999999885 358999999977
Q ss_pred hhHHHHHHHHHcCCC--eEEEeecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEE
Q 010274 248 VHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV 314 (514)
Q Consensus 248 is~a~~~~A~~rg~~--~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lv 314 (514)
+.-.. +.++..+.. +....+|...+.. .+.||-|++.. . .....+|..+.+++|+||.+-
T Consensus 138 ~~~L~-~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l--p---~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 138 VEYLK-ENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL--P---ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHHH-HHHHHTT-TTTEEEEES-GGG----TT-EEEEEE----T---SSGGGGHHHHHHHEEEEEEEE
T ss_pred HHHHH-HHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC--h---HHHHHHHHHHHHHhcCCcEEE
Confidence 65444 444444443 5667788777654 68999999653 2 222358889999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00056 Score=70.19 Aligned_cols=69 Identities=20% Similarity=0.329 Sum_probs=49.7
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHc-CCCeEEEeecCCCCCCCCCCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d~~~lp~~~~sFDlV~~s 286 (514)
..+|||||||+|.++..|++ ..|+++|+++..+.....+++... ..++.+..+|+...+++ .||.|+++
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaN 108 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVAN 108 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEec
Confidence 35799999999999999985 468888888776655553333221 23578888888766654 68998865
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00099 Score=72.58 Aligned_cols=104 Identities=20% Similarity=0.287 Sum_probs=67.0
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCC-eEEEeecCCCCC-CCCCCceEEE----
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLP-YPSRSFELAH---- 284 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~-~~~~~~d~~~lp-~~~~sFDlV~---- 284 (514)
+.+|||++||.|.=+.+++. ..+++.|++..-+.... +.++..|.. +.+...|...+. ...+.||.|+
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~-~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaP 192 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH-ANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAP 192 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCC
Confidence 46899999999988877763 35777777665443333 333344553 455556655542 2235799999
Q ss_pred eccc-cc--------ccccc--------hHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 285 CSRC-RI--------DWLQR--------DGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 285 ~s~~-~l--------~~~~d--------~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
||.. ++ .|.+. ...+|..+.+.|||||+|+.++-..
T Consensus 193 CSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 193 CSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 5531 11 11111 1458999999999999999988654
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00031 Score=70.55 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=51.8
Q ss_pred EEeecCCCC-CCCC-----CCceEEEecccccccccch---HHHHHHHHhhCCCCeEEEEEeCC---CCCCC----hhHH
Q 010274 265 LGVLGTKRL-PYPS-----RSFELAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFVYSSPE---AYAHD----PENR 328 (514)
Q Consensus 265 ~~~~d~~~l-p~~~-----~sFDlV~~s~~~l~~~~d~---~~lL~el~RvLrPGG~lvis~P~---~~~~~----~e~~ 328 (514)
++..|..+. |+.. ..||+|++++|+-.-..+. ...++++.++|||||.|++..-- .|.-. ....
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~ 217 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLP 217 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEeccccc
Confidence 445565443 3332 3599999998733333444 45899999999999999986521 11000 0000
Q ss_pred HhHHHHHHHHHhcCcEEEEEe
Q 010274 329 RIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 329 ~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
-.-+.+++.++++||.+...+
T Consensus 218 l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 218 LNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp B-HHHHHHHHHHTTEEEEEEE
T ss_pred CCHHHHHHHHHHcCCEEEecc
Confidence 112578899999999988766
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0015 Score=69.53 Aligned_cols=128 Identities=14% Similarity=0.017 Sum_probs=83.8
Q ss_pred CCeEEEECCCCchHHHHHh--cC-CCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCC-C---CCCCCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLL--SH-DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL-P---YPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La--~~-~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~l-p---~~~~sFDlV~~s 286 (514)
+++|||+=|=||.|+.+.+ ++ .|+++|++...+.-+..++..... ....++++|+... . -...+||+|+.-
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 4789999999999998887 44 899999888877777655544332 2367888885432 2 233589999973
Q ss_pred ccc--------cccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 287 RCR--------IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 287 ~~~--------l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
--. ..-..+...++..+.++|+|||.+++++......... ..+.+...+...+....
T Consensus 298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~---f~~~i~~a~~~~~~~~~ 362 (393)
T COG1092 298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDL---FLEIIARAAAAAGRRAQ 362 (393)
T ss_pred CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHH---HHHHHHHHHHhcCCcEE
Confidence 211 1112334568999999999999999988654322222 12344455555554433
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0011 Score=60.25 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=51.9
Q ss_pred CCeEEEECCCCch-HHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCC-CCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVAS-FGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~-~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~-~~sFDlV~~s~~~l~ 291 (514)
..++||||||+|. ++..|++ ..|+++|+++ ..++.+++.+. .+.+.|..+-.+. -+.+|+|++.+.
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~-----~aV~~a~~~~~--~~v~dDlf~p~~~~y~~a~liysirp--- 86 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFDVIVIDINE-----KAVEKAKKLGL--NAFVDDLFNPNLEIYKNAKLIYSIRP--- 86 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHhCC--eEEECcCCCCCHHHHhcCCEEEEeCC---
Confidence 4689999999995 8888875 4566665555 45566666654 4556665554432 256999997763
Q ss_pred cccchHHHHHHHHhhC
Q 010274 292 WLQRDGILLLELDRLL 307 (514)
Q Consensus 292 ~~~d~~~lL~el~RvL 307 (514)
.++....+.++.+.+
T Consensus 87 -p~el~~~~~~la~~~ 101 (134)
T PRK04148 87 -PRDLQPFILELAKKI 101 (134)
T ss_pred -CHHHHHHHHHHHHHc
Confidence 233344555555544
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0017 Score=68.52 Aligned_cols=119 Identities=14% Similarity=0.124 Sum_probs=73.5
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCC-C-CC--------------C
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL-P-YP--------------S 277 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~l-p-~~--------------~ 277 (514)
.++||++||+|.++..|+. ..|+++|+++.++..+.. .+...+. ++.+..+|+.+. + +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~-N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQY-NIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 3699999999999998885 468999998888766663 3444444 577887776442 1 10 1
Q ss_pred CCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecce
Q 010274 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQT 352 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (514)
..||+|+.--- ...-...+++.+.+ |++.++++..+. . .-+.+..+. + ||++...+...
T Consensus 287 ~~~D~v~lDPP---R~G~~~~~l~~l~~---~~~ivyvSC~p~------t--larDl~~L~-~-gY~l~~v~~~D 345 (362)
T PRK05031 287 YNFSTIFVDPP---RAGLDDETLKLVQA---YERILYISCNPE------T--LCENLETLS-Q-THKVERFALFD 345 (362)
T ss_pred CCCCEEEECCC---CCCCcHHHHHHHHc---cCCEEEEEeCHH------H--HHHHHHHHc-C-CcEEEEEEEcc
Confidence 25899985431 11111334454443 788888866331 1 123455444 3 89887766543
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0016 Score=62.53 Aligned_cols=98 Identities=14% Similarity=0.014 Sum_probs=61.4
Q ss_pred CeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCC-CC-C-CCC-CceEEEecc
Q 010274 217 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-Y-PSR-SFELAHCSR 287 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~-lp-~-~~~-sFDlV~~s~ 287 (514)
.++||++||+|.++..++.+ .|+++|.++..+.....+.. ..+. ++.+...|+.+ +. + ... .||+|+.--
T Consensus 51 ~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~-~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLA-LLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH-HhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 57999999999999998843 68888888876655553333 3333 46777777633 22 1 122 478887432
Q ss_pred ccccccc-chHHHHHHHH--hhCCCCeEEEEEeC
Q 010274 288 CRIDWLQ-RDGILLLELD--RLLRPGGYFVYSSP 318 (514)
Q Consensus 288 ~~l~~~~-d~~~lL~el~--RvLrPGG~lvis~P 318 (514)
.+.. ....++..+. .+|+++|.+++..+
T Consensus 130 ---Py~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 130 ---PFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred ---CCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 1211 1233444443 47899999988654
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0023 Score=60.69 Aligned_cols=122 Identities=16% Similarity=0.230 Sum_probs=80.0
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccc-
Q 010274 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR- 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~- 289 (514)
+..+||||||+|..+..|+.. ...+.|++|... ++..+.|+.++..+..+..|...- ...++.|+++.+.-.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 457999999999999988842 346789998765 444577777777766666664322 122788888754210
Q ss_pred -------------cccc--cc----hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEE
Q 010274 290 -------------IDWL--QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 290 -------------l~~~--~d----~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~ 347 (514)
..|. .+ .+.++..+..+|.|.|.|++..-... .-.++.+.++..||....
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N--------~p~ei~k~l~~~g~~~~~ 190 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN--------KPKEILKILEKKGYGVRI 190 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc--------CHHHHHHHHhhcccceeE
Confidence 1111 11 14477888899999999998653221 123666788898986543
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0015 Score=65.35 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=46.0
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCce---EEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFE---LAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFD---lV~~s 286 (514)
..+|||||||+|.++..|+. ..++++|+++..+..+..... ...++.+..+|+..++++ .|| +|+++
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~--~~~~v~v~~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLS--LYERLEVIEGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhC--cCCcEEEEECchhcCChh--HcCCcceEEEc
Confidence 46899999999999999985 357777776655433321111 134677888888888765 466 66644
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0037 Score=63.54 Aligned_cols=120 Identities=19% Similarity=0.128 Sum_probs=68.4
Q ss_pred CCCCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHc---CCCeEE--Eeec--CCCCCCCCCCce
Q 010274 214 GNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER---GIPSTL--GVLG--TKRLPYPSRSFE 281 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~r---g~~~~~--~~~d--~~~lp~~~~sFD 281 (514)
-.+++|||+|||+|.....+.+ ..++++|.+ +.+.+.++.- ...... .... ....++. ..|
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s-----~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~D 104 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRS-----PEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDD 104 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCC-----HHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCc
Confidence 3467899999999976555443 234455544 4444444332 111110 0111 1122332 349
Q ss_pred EEEecccccccccch--HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEE
Q 010274 282 LAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 282 lV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~ 347 (514)
+|++++. +.-+++. ..+++.+.+.+.+ +|+|..|... ...+...++.+.+.+.|+.++.
T Consensus 105 Lvi~s~~-L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~----~Gf~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 105 LVIASYV-LNELPSAARAELVRSLWNKTAP--VLVLVEPGTP----AGFRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred EEEEehh-hhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh----HHHHHHHHHHHHHhhCCCceEC
Confidence 9999995 4445442 3366666666655 8888887652 3334455777778777877765
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.002 Score=65.66 Aligned_cols=104 Identities=16% Similarity=0.119 Sum_probs=67.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC---------CCeEEEeecCCCC-CCCCCCc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG---------IPSTLGVLGTKRL-PYPSRSF 280 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg---------~~~~~~~~d~~~l-p~~~~sF 280 (514)
.+++||=||-|.|..++.++.. +++.+||+ ++.++.+++.. .++.+...|.... .-..++|
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID-----~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~f 150 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEID-----PAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKF 150 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcC-----HHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcC
Confidence 3479999999999999999864 45566554 45556666542 3345566664332 2222489
Q ss_pred eEEEeccccccccc----chHHHHHHHHhhCCCCeEEEEEeCCCCCCC
Q 010274 281 ELAHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYAHD 324 (514)
Q Consensus 281 DlV~~s~~~l~~~~----d~~~lL~el~RvLrPGG~lvis~P~~~~~~ 324 (514)
|+|++-. .-.--+ ....+++.+.+.|+++|.++.-.-..+...
T Consensus 151 DvIi~D~-tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 151 DVIIVDS-TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred CEEEEcC-CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence 9999643 222111 126799999999999999998754444333
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0049 Score=60.39 Aligned_cols=143 Identities=12% Similarity=0.110 Sum_probs=87.9
Q ss_pred cHHHHHHHHHHHhcCCCCcCCCCCC-CCeEEEECCCCchHHHHHh----cCCCccccCChhhhhHHHH-HHHHHcCCC-e
Q 010274 191 GADKYILALARMLKFPSDKLNNGGN-IRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQI-QFALERGIP-S 263 (514)
Q Consensus 191 ga~~y~~~l~~ll~~~~~~l~~~~~-~~~VLDIGCGtG~~a~~La----~~~V~gvdis~~dis~a~~-~~A~~rg~~-~ 263 (514)
..+-|.+++.+.+..... ... ..+++|||+|.|.=+..|+ +.+|+-+|-...-+ +.+ +...+-+.+ +
T Consensus 46 ~~e~~~rHilDSl~~~~~----~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~--~FL~~~~~eL~L~nv 119 (215)
T COG0357 46 PEELWQRHILDSLVLLPY----LDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI--AFLREVKKELGLENV 119 (215)
T ss_pred HHHHHHHHHHHHhhhhhc----ccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH--HHHHHHHHHhCCCCe
Confidence 344556666655543221 111 4689999999998777766 33455554433222 222 233445665 7
Q ss_pred EEEeecCCCCCCCCCC-ceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcC
Q 010274 264 TLGVLGTKRLPYPSRS-FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC 342 (514)
Q Consensus 264 ~~~~~d~~~lp~~~~s-FDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~G 342 (514)
.++...++...-. .. ||+|.|.. +.+...++.=+..++|+||.++.- +.......+.+.+......+
T Consensus 120 ~i~~~RaE~~~~~-~~~~D~vtsRA-----va~L~~l~e~~~pllk~~g~~~~~------k~~~~~~e~~e~~~a~~~~~ 187 (215)
T COG0357 120 EIVHGRAEEFGQE-KKQYDVVTSRA-----VASLNVLLELCLPLLKVGGGFLAY------KGLAGKDELPEAEKAILPLG 187 (215)
T ss_pred EEehhhHhhcccc-cccCcEEEeeh-----ccchHHHHHHHHHhcccCCcchhh------hHHhhhhhHHHHHHHHHhhc
Confidence 8887777776532 23 99998543 244566788888999999987641 22233344667888888888
Q ss_pred cEEEEEecc
Q 010274 343 WKIVSKKDQ 351 (514)
Q Consensus 343 f~~v~~~~~ 351 (514)
+.+......
T Consensus 188 ~~~~~~~~~ 196 (215)
T COG0357 188 GQVEKVFSL 196 (215)
T ss_pred CcEEEEEEe
Confidence 887765544
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0019 Score=63.41 Aligned_cols=95 Identities=18% Similarity=0.144 Sum_probs=65.8
Q ss_pred CeEEEECCCCchHHHHHh-----cCCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCC-CC-----CCCCCceEE
Q 010274 217 RNVLDVGCGVASFGAYLL-----SHDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-----YPSRSFELA 283 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La-----~~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~-lp-----~~~~sFDlV 283 (514)
+++||||.=||.-+..+| +..|+++|+......... +..+..|. .+.+.++.+.+ ++ .+.++||+|
T Consensus 75 k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~-~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 75 KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGL-ELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred ceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhH-HHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 689999977775555444 357889999877665553 44444454 35666665322 21 356899999
Q ss_pred EecccccccccchHHHHHHHHhhCCCCeEEEEE
Q 010274 284 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 284 ~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis 316 (514)
+ +-++-.+...+..++.++||+||.+++-
T Consensus 154 F----vDadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 154 F----VDADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred E----EccchHHHHHHHHHHHhhcccccEEEEe
Confidence 8 3445555667999999999999999973
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00018 Score=66.71 Aligned_cols=134 Identities=14% Similarity=0.285 Sum_probs=79.4
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccC---ChhhhhHHHHHHHHHcCC-----CeEEEeec--CCCCCCCCCCceEEEec
Q 010274 217 RNVLDVGCGVASFGAYLLSHDIIAMSL---APNDVHENQIQFALERGI-----PSTLGVLG--TKRLPYPSRSFELAHCS 286 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~V~gvdi---s~~dis~a~~~~A~~rg~-----~~~~~~~d--~~~lp~~~~sFDlV~~s 286 (514)
++||++|.|--.++..|....+...++ ++++.+-..++....++. .+...... ..+......+||+|+|+
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 679999999555544443221111122 233333333333333321 11111111 11222344689999999
Q ss_pred ccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc-eEEEecc
Q 010274 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ-TVIWAKP 358 (514)
Q Consensus 287 ~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~-~~iw~Kp 358 (514)
.|++ +.+.-+.++..+.+.|+|.|..++..|.-- +....+.+.....||.+...++. ..+||+-
T Consensus 111 DClF-fdE~h~sLvdtIk~lL~p~g~Al~fsPRRg-------~sL~kF~de~~~~gf~v~l~enyde~iwqrh 175 (201)
T KOG3201|consen 111 DCLF-FDEHHESLVDTIKSLLRPSGRALLFSPRRG-------QSLQKFLDEVGTVGFTVCLEENYDEAIWQRH 175 (201)
T ss_pred cchh-HHHHHHHHHHHHHHHhCcccceeEecCccc-------chHHHHHHHHHhceeEEEecccHhHHHHHHH
Confidence 9843 445557799999999999999998887532 22456778889999998776654 5577654
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0044 Score=64.49 Aligned_cols=117 Identities=11% Similarity=0.091 Sum_probs=73.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
.+.++|||||++|.|+..|.++ .|+++|..+.+. . ......+.....+..+...+.+.+|+++|-.
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~--~-----L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDm----- 278 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ--S-----LMDTGQVEHLRADGFKFRPPRKNVDWLVCDM----- 278 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH--h-----hhCCCCEEEEeccCcccCCCCCCCCEEEEec-----
Confidence 4568999999999999999964 577777544221 1 1223456666666544432257899999875
Q ss_pred ccchHHHHHHHHhhCCCC--eEEEEEeCCCCCCC-hhHHHhHHHHHHHHHhcCc
Q 010274 293 LQRDGILLLELDRLLRPG--GYFVYSSPEAYAHD-PENRRIWNAMYDLLKSMCW 343 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPG--G~lvis~P~~~~~~-~e~~~~~~~l~~ll~~~Gf 343 (514)
...|..+.+-+.+.|..| ..+++..--..... ++-....+.+...+.+.|.
T Consensus 279 ve~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~ 332 (357)
T PRK11760 279 VEKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGI 332 (357)
T ss_pred ccCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 345667777777777666 45665543222222 2223334456677777775
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0042 Score=62.66 Aligned_cols=114 Identities=12% Similarity=0.110 Sum_probs=72.1
Q ss_pred CCCCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHc---------CCCeEEEeecCCCCCCCCCCceE
Q 010274 214 GNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRLPYPSRSFEL 282 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~r---------g~~~~~~~~d~~~lp~~~~sFDl 282 (514)
+.+++||=||.|.|..++.++++ +|+-+|+++ ..++.+++- .+++.+.. ...+ -..++||+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~-----~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~--~~~~~fDV 142 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADE-----KILDSFISFFPHFHEVKNNKNFTHAK-QLLD--LDIKKYDL 142 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCH-----HHHHHHHHHCHHHHHhhcCCCEEEee-hhhh--ccCCcCCE
Confidence 45689999999999999999975 455555544 445555552 22333332 1111 12368999
Q ss_pred EEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 283 V~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
|++-. . ....+.+.+.|.|+|||.++......+.. ...+..+.+.+++ .|..+
T Consensus 143 IIvDs-~-----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~----~~~~~~i~~~l~~-~F~~v 195 (262)
T PRK00536 143 IICLQ-E-----PDIHKIDGLKRMLKEDGVFISVAKHPLLE----HVSMQNALKNMGD-FFSIA 195 (262)
T ss_pred EEEcC-C-----CChHHHHHHHHhcCCCcEEEECCCCcccC----HHHHHHHHHHHHh-hCCce
Confidence 99553 1 33568899999999999999865444322 1223455555555 46544
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0024 Score=67.19 Aligned_cols=117 Identities=12% Similarity=0.099 Sum_probs=70.8
Q ss_pred eEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCC-C-------C---C-----CC
Q 010274 218 NVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL-P-------Y---P-----SR 278 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~l-p-------~---~-----~~ 278 (514)
+|||++||+|.++..|+. ..|+++|+++.++..+..+ +...+. ++.+..+|+.++ + + . ..
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n-~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYN-IAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHH-HHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 599999999999999885 4689999988887666643 444444 577877776442 1 1 0 12
Q ss_pred CceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 279 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 279 sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
.||+|+..-- ...-...++..+. +|++.++++..+. ..-+++..+.+ +|++...+..
T Consensus 279 ~~d~v~lDPP---R~G~~~~~l~~l~---~~~~ivYvsC~p~--------tlaRDl~~L~~--~Y~l~~v~~~ 335 (353)
T TIGR02143 279 NCSTIFVDPP---RAGLDPDTCKLVQ---AYERILYISCNPE--------TLKANLEQLSE--THRVERFALF 335 (353)
T ss_pred CCCEEEECCC---CCCCcHHHHHHHH---cCCcEEEEEcCHH--------HHHHHHHHHhc--CcEEEEEEEc
Confidence 3798884321 1111133444443 4788888875331 11234554442 3877766554
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0035 Score=65.03 Aligned_cols=95 Identities=20% Similarity=0.197 Sum_probs=66.8
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecC-CCCCCCCCCceEEEeccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~-~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
....+|+|.|.|..+..+.. .+|.+++++...+.++..+.+ ..+..+-+|. ++.| +-|+|++-.+++||
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~----~gV~~v~gdmfq~~P----~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA----PGVEHVAGDMFQDTP----KGDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc----CCcceecccccccCC----CcCeEEEEeecccC
Confidence 56899999999999998875 246677776555544433332 2355555553 3344 23699999976666
Q ss_pred ccch-HHHHHHHHhhCCCCeEEEEEeC
Q 010274 293 LQRD-GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 293 ~~d~-~~lL~el~RvLrPGG~lvis~P 318 (514)
.++. ..+|+++...|+|||.+++...
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 5433 6799999999999999998764
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0034 Score=62.78 Aligned_cols=125 Identities=15% Similarity=0.185 Sum_probs=76.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHc----CCCeEEEeecCCCC-CCCCC-CceEEE
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRL-PYPSR-SFELAH 284 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~r----g~~~~~~~~d~~~l-p~~~~-sFDlV~ 284 (514)
++++||=||-|.|..+..+... .++.+|+++.-+..+..-+.... ..++.++..|.... .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 4679999999999999999864 46667666654433322222111 24677777775332 11223 899999
Q ss_pred ecccccccccc----hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcE
Q 010274 285 CSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (514)
Q Consensus 285 ~s~~~l~~~~d----~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~ 344 (514)
.-.. -...+. ...+++.+.+.|+|||.+++-....+. . ......+.+.+++....
T Consensus 156 ~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~-~---~~~~~~i~~tl~~~F~~ 214 (246)
T PF01564_consen 156 VDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFL-H---PELFKSILKTLRSVFPQ 214 (246)
T ss_dssp EESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTT-T---HHHHHHHHHHHHTTSSE
T ss_pred EeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCccc-c---hHHHHHHHHHHHHhCCc
Confidence 6431 111111 257999999999999999986533321 1 22355667777877663
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0056 Score=63.90 Aligned_cols=153 Identities=15% Similarity=0.084 Sum_probs=101.2
Q ss_pred ccCceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc--C-CCccccCChhhhhH
Q 010274 174 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--H-DIIAMSLAPNDVHE 250 (514)
Q Consensus 174 ~~g~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~-~V~gvdis~~dis~ 250 (514)
.+|-.|.++-...+|..+...-...++++... +.+|||+=||.|.|+..++. + .|.++|++|..+.-
T Consensus 157 E~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~----------GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~ 226 (341)
T COG2520 157 ENGCRFKVDVAKVYFSPRLSTERARVAELVKE----------GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEY 226 (341)
T ss_pred cCCEEEEEchHHeEECCCchHHHHHHHhhhcC----------CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHH
Confidence 34445555555666777766555555555542 35899999999999999884 3 38899999987755
Q ss_pred HHHHHHHHcCCC-eEEEeecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHH
Q 010274 251 NQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRR 329 (514)
Q Consensus 251 a~~~~A~~rg~~-~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~ 329 (514)
...+....+-.. +....+|.......-+.||-|++.. ..+...++..+.+.+++||.+-+..-.......+ .
T Consensus 227 L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~-----p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~--~ 299 (341)
T COG2520 227 LKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL-----PKSAHEFLPLALELLKDGGIIHYYEFVPEDDIEE--R 299 (341)
T ss_pred HHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC-----CCcchhhHHHHHHHhhcCcEEEEEeccchhhccc--c
Confidence 554433333222 5678888877775557899999554 3344568999999999999998754221100000 1
Q ss_pred hHHHHHHHHHhcCc
Q 010274 330 IWNAMYDLLKSMCW 343 (514)
Q Consensus 330 ~~~~l~~ll~~~Gf 343 (514)
....+.....+.|+
T Consensus 300 ~~~~i~~~~~~~~~ 313 (341)
T COG2520 300 PEKRIKSAARKGGY 313 (341)
T ss_pred hHHHHHHHHhhccC
Confidence 34577777888876
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.003 Score=67.97 Aligned_cols=98 Identities=23% Similarity=0.405 Sum_probs=74.3
Q ss_pred eEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc-
Q 010274 218 NVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL- 293 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~- 293 (514)
++|-+|||.-.+...+.+ ..|+.+|+++..++......+++ .....+...|...+.|++++||+|+--. .++.+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~-~~~~~~~~~d~~~l~fedESFdiVIdkG-tlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE-RPEMQMVEMDMDQLVFEDESFDIVIDKG-TLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC-CcceEEEEecchhccCCCcceeEEEecC-cccccc
Confidence 799999999999888874 57888988888876665555422 2346788889999999999999999755 34433
Q ss_pred cch---------HHHHHHHHhhCCCCeEEEEEe
Q 010274 294 QRD---------GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 294 ~d~---------~~lL~el~RvLrPGG~lvis~ 317 (514)
.+. ...+.++.|+|+|||+++..+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 221 236889999999999977543
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0092 Score=64.45 Aligned_cols=120 Identities=19% Similarity=0.174 Sum_probs=79.4
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCC---CCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP---SRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~---~~sFDlV~~s~~~l 290 (514)
..++||+=||.|.|+..|+. ..|+|+++++.++..+..+.+.....++.|..+++++.... ...||.|+..--
T Consensus 294 ~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPP-- 371 (432)
T COG2265 294 GERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPP-- 371 (432)
T ss_pred CCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCC--
Confidence 35899999999999999995 57999999999998887554444445688888887766532 357899984320
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEE
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~ 348 (514)
-..-...+++.+. .++|-..+++|-.+. .+.+=...+.+.|+++.+.
T Consensus 372 -R~G~~~~~lk~l~-~~~p~~IvYVSCNP~---------TlaRDl~~L~~~gy~i~~v 418 (432)
T COG2265 372 -RAGADREVLKQLA-KLKPKRIVYVSCNPA---------TLARDLAILASTGYEIERV 418 (432)
T ss_pred -CCCCCHHHHHHHH-hcCCCcEEEEeCCHH---------HHHHHHHHHHhCCeEEEEE
Confidence 0000123555544 457777888876432 1333345567778765443
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0022 Score=67.96 Aligned_cols=96 Identities=9% Similarity=0.100 Sum_probs=68.1
Q ss_pred CeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCC-CCCCCceEEEecccc
Q 010274 217 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHCSRCR 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp-~~~~sFDlV~~s~~~ 289 (514)
-+|||+.||+|..+..++. ..|+++|+++..+.....+. +..+. ++.+...|+..+- .....||+|..--
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~-~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNV-EYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHH-HHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 4799999999999999874 24788999887776555433 33333 4566666654432 1235799998432
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
+ ..+..++..+.+.+++||.+.++..
T Consensus 123 --f-Gs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 123 --F-GTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred --C-CCcHHHHHHHHHhcccCCEEEEEec
Confidence 2 3445799999999999999999753
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0022 Score=65.77 Aligned_cols=119 Identities=17% Similarity=0.205 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc-----------CCCccccCChhhhhHHHHHHHHHcCC
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----------HDIIAMSLAPNDVHENQIQFALERGI 261 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-----------~~V~gvdis~~dis~a~~~~A~~rg~ 261 (514)
....+.+.+++.. ....+|||-.||+|.|...+.. ..+.|+|+++....-+..+.... +.
T Consensus 32 ~~i~~l~~~~~~~--------~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~-~~ 102 (311)
T PF02384_consen 32 REIVDLMVKLLNP--------KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH-GI 102 (311)
T ss_dssp HHHHHHHHHHHTT---------TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT-TH
T ss_pred HHHHHHHHhhhhc--------cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh-cc
Confidence 3444556666632 2335799999999998777653 35677888776665555444332 22
Q ss_pred ---CeEEEeecCCCCCCC--CCCceEEEeccccccc--c------------------cchHHHHHHHHhhCCCCeEEEEE
Q 010274 262 ---PSTLGVLGTKRLPYP--SRSFELAHCSRCRIDW--L------------------QRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 262 ---~~~~~~~d~~~lp~~--~~sFDlV~~s~~~l~~--~------------------~d~~~lL~el~RvLrPGG~lvis 316 (514)
...+...|....+.. ...||+|+++--.... . .....++..+.+.|++||++++.
T Consensus 103 ~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 103 DNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp HCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 123556665444332 4689999985211111 0 01124888999999999999998
Q ss_pred eCCC
Q 010274 317 SPEA 320 (514)
Q Consensus 317 ~P~~ 320 (514)
.|..
T Consensus 183 lp~~ 186 (311)
T PF02384_consen 183 LPNG 186 (311)
T ss_dssp EEHH
T ss_pred ecch
Confidence 8764
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0083 Score=61.34 Aligned_cols=73 Identities=12% Similarity=0.199 Sum_probs=54.3
Q ss_pred CCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChh-------HH-HhHHHHHHHHHhcCcEEEEEe
Q 010274 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE-------NR-RIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e-------~~-~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
++||+|+..+ .+.-..+.-+++..+..+|||||+++=..|-.|....+ .. -..+++..+++..||++++.+
T Consensus 258 ~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 258 GSYDVVVTCF-FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CccceEEEEE-EeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 3699998776 46555666779999999999999999877754432211 11 246789999999999999877
Q ss_pred cc
Q 010274 350 DQ 351 (514)
Q Consensus 350 ~~ 351 (514)
..
T Consensus 337 ~I 338 (369)
T KOG2798|consen 337 GI 338 (369)
T ss_pred ee
Confidence 43
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.00097 Score=61.57 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=56.1
Q ss_pred CCCCCCCCCCceEEEecccccccccch--HHHHHHHHhhCCCCeEEEEEeCCCCCC-------------------ChhHH
Q 010274 270 TKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAH-------------------DPENR 328 (514)
Q Consensus 270 ~~~lp~~~~sFDlV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~~-------------------~~e~~ 328 (514)
....+|.+++.|+|+|.+ +++|+.-. ..++++++|.|||||+|-++.|+.... +....
T Consensus 38 s~e~~F~dns~d~iyaeH-vlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v 116 (185)
T COG4627 38 SNESMFEDNSVDAIYAEH-VLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIV 116 (185)
T ss_pred hhhccCCCcchHHHHHHH-HHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHH
Confidence 455679999999999988 67776433 558999999999999999999854211 11112
Q ss_pred HhHHHHHHHHHhcCcEEE
Q 010274 329 RIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 329 ~~~~~l~~ll~~~Gf~~v 346 (514)
..++.+.+.+.++||.+-
T Consensus 117 ~t~r~m~n~~m~~~~~~k 134 (185)
T COG4627 117 KTMRMMFNGFMDAGFVVK 134 (185)
T ss_pred HHHHHHHHHHHhhhheeh
Confidence 355678888888888543
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0012 Score=60.38 Aligned_cols=71 Identities=15% Similarity=0.219 Sum_probs=54.6
Q ss_pred CCeEEEECCCCchHHHHHh---cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLL---SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La---~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~ 287 (514)
++.++|+|||.|-+....+ ...|+|+|+.+..+.... +.|.+-.+++.+.+++...+-+..+.||.++.+.
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~-rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT-RNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh-hchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 4679999999998774443 357899999987775444 5556666777888899888887778999998653
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0015 Score=61.63 Aligned_cols=91 Identities=25% Similarity=0.327 Sum_probs=51.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecC---------CCC-CCCCCC
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT---------KRL-PYPSRS 279 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~---------~~l-p~~~~s 279 (514)
+..+|||+||++|.|+..+... .|+++|+.+.+.. ..+....+|. ... +-..+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-----------~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-----------QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------------TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-----------cceeeeecccchhhHHHhhhhhccccccC
Confidence 4578999999999999999853 4788888765211 1112222221 111 111268
Q ss_pred ceEEEeccccccccc----ch-------HHHHHHHHhhCCCCeEEEEEe
Q 010274 280 FELAHCSRCRIDWLQ----RD-------GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 280 FDlV~~s~~~l~~~~----d~-------~~lL~el~RvLrPGG~lvis~ 317 (514)
||+|+|-. ...... +. ...+.-+...|+|||.+++..
T Consensus 92 ~dlv~~D~-~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 92 FDLVLSDM-APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp ESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred cceecccc-ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 99999854 111111 11 224455567899999988755
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0084 Score=66.34 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=19.1
Q ss_pred HHHHhhCCCCeEEEEEeCCCCCC
Q 010274 301 LELDRLLRPGGYFVYSSPEAYAH 323 (514)
Q Consensus 301 ~el~RvLrPGG~lvis~P~~~~~ 323 (514)
+.+.++|++||++.+..|..+..
T Consensus 180 ~~~~~lL~~~G~~~~I~P~s~l~ 202 (524)
T TIGR02987 180 EISLEIANKNGYVSIISPASWLG 202 (524)
T ss_pred HHHHHhcCCCCEEEEEEChHHhc
Confidence 45789999999999999976543
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.019 Score=56.40 Aligned_cols=131 Identities=14% Similarity=0.176 Sum_probs=84.8
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC-C--CCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-Y--PSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp-~--~~~sFDlV~~s~ 287 (514)
+.+||-+|+.+|....++++ ..|.++++++... ...++.|++|. ++.-+..|+..-. | --+..|+|++--
T Consensus 74 gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~~la~~R~-NIiPIl~DAr~P~~Y~~lv~~VDvI~~DV 151 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLLNLAKKRP-NIIPILEDARHPEKYRMLVEMVDVIFQDV 151 (229)
T ss_dssp T-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHST-TEEEEES-TTSGGGGTTTS--EEEEEEE-
T ss_pred CCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHHHHhccCC-ceeeeeccCCChHHhhcccccccEEEecC
Confidence 46899999999998888873 3578999998654 45557888773 5554555554221 1 124799999653
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEeCCC-CCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA-YAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~-~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
+ ...+.+.++.++..-||+||.++++.... ..........|.+-.+.+++.||+..+....
T Consensus 152 a---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~L 213 (229)
T PF01269_consen 152 A---QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITL 213 (229)
T ss_dssp S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-
T ss_pred C---ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEecc
Confidence 1 22334668889999999999999876421 0111222345777777888889998876543
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.02 Score=55.55 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=61.7
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC--------CCCCCceE
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp--------~~~~sFDl 282 (514)
..+|+|+|+-.|+++..+++ ..|+++|+.|.+.. ..+.++++|+..-+ +....+|+
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-----------~~V~~iq~d~~~~~~~~~l~~~l~~~~~Dv 114 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-----------PGVIFLQGDITDEDTLEKLLEALGGAPVDV 114 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-----------CCceEEeeeccCccHHHHHHHHcCCCCcce
Confidence 46899999999999998874 23889999887652 33677777765433 33445799
Q ss_pred EEecccc---cccccch-------HHHHHHHHhhCCCCeEEEEEe
Q 010274 283 AHCSRCR---IDWLQRD-------GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 283 V~~s~~~---l~~~~d~-------~~lL~el~RvLrPGG~lvis~ 317 (514)
|+|-... -++..|. ..++.-+..+|+|||.|++..
T Consensus 115 V~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 115 VLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred EEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 9963311 1111111 336666778999999999854
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.015 Score=60.42 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=61.0
Q ss_pred CeEEEECCCCchHHHHHhc--------CCCccccCChhhhhHHHHHHHHHcCCCeEE--EeecCCC----CCC--CCCCc
Q 010274 217 RNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGIPSTL--GVLGTKR----LPY--PSRSF 280 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--------~~V~gvdis~~dis~a~~~~A~~rg~~~~~--~~~d~~~----lp~--~~~sF 280 (514)
..++|+|||.|.=+..|++ ...+++||+...+..+..+........+.+ +.+|..+ ++- .....
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 4799999999976665542 123455555555544443333122223333 4555322 221 12346
Q ss_pred eEEEecccccccccch--HHHHHHHHh-hCCCCeEEEEEe
Q 010274 281 ELAHCSRCRIDWLQRD--GILLLELDR-LLRPGGYFVYSS 317 (514)
Q Consensus 281 DlV~~s~~~l~~~~d~--~~lL~el~R-vLrPGG~lvis~ 317 (514)
.+++.....+...+.. ..+|+++.+ .|+|||.|++..
T Consensus 158 r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 158 TTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 7887766566665544 458999999 999999999854
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0043 Score=63.74 Aligned_cols=91 Identities=18% Similarity=0.285 Sum_probs=57.6
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHc----CC--CeEEEeecCCCCCCCCCCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~r----g~--~~~~~~~d~~~lp~~~~sFDlV~~s 286 (514)
.+.|||||||+|.++...+. ++|.+++.+. |.+.|+.. .. ++.++.+.+++..+| ++.|+|++-
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~------MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISE 250 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE------MAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISE 250 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceEEEEehhH------HHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEec
Confidence 46899999999987776653 4677775543 23444332 22 345555667777777 688999964
Q ss_pred ccccccccchHHHH---HHHHhhCCCCeEEEE
Q 010274 287 RCRIDWLQRDGILL---LELDRLLRPGGYFVY 315 (514)
Q Consensus 287 ~~~l~~~~d~~~lL---~el~RvLrPGG~lvi 315 (514)
- +.++.-.+.+| .-..+.|+|.|..+=
T Consensus 251 P--MG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 251 P--MGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred c--chhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 2 33332223332 235599999999873
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0035 Score=64.08 Aligned_cols=104 Identities=16% Similarity=0.139 Sum_probs=66.9
Q ss_pred CeEEEECCCCchHHHHHh--c-CCCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCC-CC--CCCCCceEEEeccc
Q 010274 217 RNVLDVGCGVASFGAYLL--S-HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKR-LP--YPSRSFELAHCSRC 288 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La--~-~~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~-lp--~~~~sFDlV~~s~~ 288 (514)
++|||+=|=||.|+.+.+ + ..|+.+|.+...+..+..+.+...- ....+...|+.. +. -..++||+|++---
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPP 204 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPP 204 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--S
T ss_pred CceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECCC
Confidence 689999999999999865 2 3588999888888777755554431 246777777543 21 12368999998321
Q ss_pred c-----cccccchHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 289 R-----IDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 289 ~-----l~~~~d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
. ..-..+...++..+.++|+|||.|++++...
T Consensus 205 sF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 205 SFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp SEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 1 1112344668999999999999999877543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.017 Score=55.52 Aligned_cols=97 Identities=15% Similarity=0.145 Sum_probs=60.5
Q ss_pred CCCeEEEECCCCchHHHHHh--c-CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLL--S-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La--~-~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..++|||+|+|+|..+..-+ + ..|+..|+.|.- ..+..-.+..++..+.+...|... .+..||+++.+..+..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~-~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWL-EQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHH-HHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 45789999999997665544 3 367788887643 333334455567777666655433 4578999998874333
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+. .-..++. +.+.|+..|.-++..
T Consensus 155 ~~-~a~~l~~-~~~~l~~~g~~vlvg 178 (218)
T COG3897 155 HT-EADRLIP-WKDRLAEAGAAVLVG 178 (218)
T ss_pred ch-HHHHHHH-HHHHHHhCCCEEEEe
Confidence 32 2234555 666666666555444
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.016 Score=58.32 Aligned_cols=69 Identities=19% Similarity=0.144 Sum_probs=49.7
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCC-CceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSR-SFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~-sFDlV~~s 286 (514)
..+|||||+|.|.++..|++ ..|+++++++..+..-....+ ...+..++.+|+...++++. .++.|+++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchhhcCCCEEEEc
Confidence 46899999999999999995 468888887654422221111 23567888999988888753 67888855
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.087 Score=53.14 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=83.5
Q ss_pred HHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHc-CCCeEEEeec
Q 010274 196 ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLG 269 (514)
Q Consensus 196 ~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d 269 (514)
+..|..++.... +.+||+-|.|+|+++.+++. .++...|+...-...+..++-... +.++.+..-|
T Consensus 94 ia~I~~~L~i~P--------GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrD 165 (314)
T KOG2915|consen 94 IAMILSMLEIRP--------GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRD 165 (314)
T ss_pred HHHHHHHhcCCC--------CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEee
Confidence 345667776532 35899999999999999884 356677664433333333332222 3356777777
Q ss_pred CCCCCCC--CCCceEEEecccccccccchHHHHHHHHhhCCCCe-EEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 270 TKRLPYP--SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 270 ~~~lp~~--~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG-~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
....-|. +..+|.|+-- ++.|..++--++.+||.+| +|+-.+|- .+..+.-.+++.++||..+
T Consensus 166 Vc~~GF~~ks~~aDaVFLD------lPaPw~AiPha~~~lk~~g~r~csFSPC--------IEQvqrtce~l~~~gf~~i 231 (314)
T KOG2915|consen 166 VCGSGFLIKSLKADAVFLD------LPAPWEAIPHAAKILKDEGGRLCSFSPC--------IEQVQRTCEALRSLGFIEI 231 (314)
T ss_pred cccCCccccccccceEEEc------CCChhhhhhhhHHHhhhcCceEEeccHH--------HHHHHHHHHHHHhCCCceE
Confidence 7666554 5679998722 4556667777888999877 55543321 1223345577888999766
Q ss_pred EEec
Q 010274 347 SKKD 350 (514)
Q Consensus 347 ~~~~ 350 (514)
..-.
T Consensus 232 ~~vE 235 (314)
T KOG2915|consen 232 ETVE 235 (314)
T ss_pred EEEE
Confidence 5433
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.018 Score=56.08 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=50.7
Q ss_pred CCeEEEECCCCchHHHHHh---cCC-CccccCChhhhhHHH--HHHHHH----cCC---CeEEEeecCCCCCCCC---CC
Q 010274 216 IRNVLDVGCGVASFGAYLL---SHD-IIAMSLAPNDVHENQ--IQFALE----RGI---PSTLGVLGTKRLPYPS---RS 279 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La---~~~-V~gvdis~~dis~a~--~~~A~~----rg~---~~~~~~~d~~~lp~~~---~s 279 (514)
....+|||||.|......+ +.. ..|+++.+.-...+. .+..++ .|. ++.+..+|..+.++.. ..
T Consensus 43 ~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~ 122 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWSD 122 (205)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGHC
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhcC
Confidence 3589999999997765554 333 789998875333222 121111 122 3455555544332110 23
Q ss_pred ceEEEecccccccccchHHHHHHHHhhCCCCeEEEE
Q 010274 280 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 315 (514)
Q Consensus 280 FDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvi 315 (514)
-|+|++++. -+.++....|.+....||+|-+++-
T Consensus 123 AdvVf~Nn~--~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 123 ADVVFVNNT--CFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp -SEEEE--T--TT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred CCEEEEecc--ccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 599998873 2445556677888889999877663
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.028 Score=54.86 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcCCC---ccccCChhhhhHHHHHHHHHcCC----CeEE
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDI---IAMSLAPNDVHENQIQFALERGI----PSTL 265 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~V---~gvdis~~dis~a~~~~A~~rg~----~~~~ 265 (514)
..+.+.+++.+. .++++||.||-|-|.....+.++.. +.++.. +...+..+..|. ++.+
T Consensus 88 tpiMha~A~ai~---------tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~h-----p~V~krmr~~gw~ek~nVii 153 (271)
T KOG1709|consen 88 TPIMHALAEAIS---------TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAH-----PDVLKRMRDWGWREKENVII 153 (271)
T ss_pred hHHHHHHHHHHh---------hCCceEEEeccchHHHHHHHhhcCCcceEEEecC-----HHHHHHHHhcccccccceEE
Confidence 345555555554 3446899999999988887775432 234333 333444444432 3444
Q ss_pred EeecCCC-C-CCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEE
Q 010274 266 GVLGTKR-L-PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 266 ~~~d~~~-l-p~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis 316 (514)
..+-=++ + .++++.||-|+--. .-++-++...+.+.+.|+|||+|.|-+.
T Consensus 154 l~g~WeDvl~~L~d~~FDGI~yDT-y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 154 LEGRWEDVLNTLPDKHFDGIYYDT-YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred EecchHhhhccccccCcceeEeec-hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 3332111 1 25678899998543 3366677788999999999999999874
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.0089 Score=57.17 Aligned_cols=131 Identities=18% Similarity=0.168 Sum_probs=75.1
Q ss_pred ceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHH
Q 010274 177 EKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQI 253 (514)
Q Consensus 177 ~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~ 253 (514)
-.+..|.+ ....+..++..+.+.+++... . -...++||+-||+|.++...+. ..|+.+|.+......-.
T Consensus 11 r~l~~p~~-~~~RPT~drvrealFniL~~~-~-----~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~- 82 (183)
T PF03602_consen 11 RKLKTPKG-DNTRPTTDRVREALFNILQPR-N-----LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIK- 82 (183)
T ss_dssp -EEE-TT---TS-SSSHHHHHHHHHHHHCH-------HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHH-
T ss_pred CEecCCCC-CCcCCCcHHHHHHHHHHhccc-c-----cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHH-
Confidence 34444433 334455566777777777642 0 1236899999999999998774 36778888776554333
Q ss_pred HHHHHcCC--CeEEEeecCC-CCC---CCCCCceEEEecccccccccc--hHHHHHHHH--hhCCCCeEEEEEeC
Q 010274 254 QFALERGI--PSTLGVLGTK-RLP---YPSRSFELAHCSRCRIDWLQR--DGILLLELD--RLLRPGGYFVYSSP 318 (514)
Q Consensus 254 ~~A~~rg~--~~~~~~~d~~-~lp---~~~~sFDlV~~s~~~l~~~~d--~~~lL~el~--RvLrPGG~lvis~P 318 (514)
+.++.-+. ...+...|.. .+. .....||+|+.-- +|... ...++..+. .+|+++|.+++...
T Consensus 83 ~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 83 KNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 33333333 2556666632 221 2457899999643 33333 255777776 79999999999664
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.039 Score=58.20 Aligned_cols=125 Identities=19% Similarity=0.210 Sum_probs=74.5
Q ss_pred CCeEEEECCCCchHHHHHhcC-----C-CccccCChhhhhHHHHHHHHHcCCC-eEEEeecCCCCC---CCCCCceEEEe
Q 010274 216 IRNVLDVGCGVASFGAYLLSH-----D-IIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLP---YPSRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-----~-V~gvdis~~dis~a~~~~A~~rg~~-~~~~~~d~~~lp---~~~~sFDlV~~ 285 (514)
+.+|||+.++.|.=+.++++. . |+++|+++.=+. .+.+..+..|.. +.....|...++ ...+.||.|+.
T Consensus 157 ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~-~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLl 235 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLK-RLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILL 235 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHH-HHHHHHHHcCCCceEEEecccccccccccccCcCcEEEE
Confidence 468999999999877777632 2 477777664432 222344444654 456666665543 22235999995
Q ss_pred ----c-ccccccccc----------------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc-Cc
Q 010274 286 ----S-RCRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CW 343 (514)
Q Consensus 286 ----s-~~~l~~~~d----------------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~-Gf 343 (514)
| ..++.-.++ ...+|..+.++|||||.|++++-.... +|+ -..+...+++. +|
T Consensus 236 DaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~--eEN---E~vV~~~L~~~~~~ 310 (355)
T COG0144 236 DAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP--EEN---EEVVERFLERHPDF 310 (355)
T ss_pred CCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch--hcC---HHHHHHHHHhCCCc
Confidence 2 112211111 134899999999999999999865432 121 12445566554 55
Q ss_pred EEE
Q 010274 344 KIV 346 (514)
Q Consensus 344 ~~v 346 (514)
+.+
T Consensus 311 ~~~ 313 (355)
T COG0144 311 ELE 313 (355)
T ss_pred eee
Confidence 444
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.032 Score=56.23 Aligned_cols=69 Identities=19% Similarity=0.186 Sum_probs=49.4
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCCCCCCCCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~lp~~~~sFDlV~~s 286 (514)
...|||||-|||.++..|.+ +.|+++++++.++.+-.....-.-. ....+..+|....++| .||.++++
T Consensus 59 tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsN 130 (315)
T KOG0820|consen 59 TDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSN 130 (315)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeecc
Confidence 46899999999999999985 5899999988877554432221110 1356777777776665 69999964
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.13 Score=51.06 Aligned_cols=126 Identities=17% Similarity=0.239 Sum_probs=81.2
Q ss_pred CCCCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEE-eecCCCCC---CCCCCceEEEec
Q 010274 214 GNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLG-VLGTKRLP---YPSRSFELAHCS 286 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~~~~~~-~~d~~~lp---~~~~sFDlV~~s 286 (514)
.+.+.+||||+-||.|+..+++. .|.++|+.-..++... +...++... ..++..+. +. +..|+|+|-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kL-----R~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~D 151 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKL-----RNDPRVIVLERTNVRYLTPEDFT-EKPDLIVID 151 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhH-----hcCCcEEEEecCChhhCCHHHcc-cCCCeEEEE
Confidence 34578999999999999999853 6888887665554443 223333322 22233332 22 367899876
Q ss_pred ccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCC------------CChhH-HHhHHHHHHHHHhcCcEEEEEe
Q 010274 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA------------HDPEN-RRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 287 ~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~------------~~~e~-~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
-+.+ ....+|-.+..+|+|+|.++.-.-+.+. +++.. .....++.+.++..||.+....
T Consensus 152 vSFI----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 152 VSFI----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred eehh----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeE
Confidence 5423 2456899999999999998875543322 22222 2244688899999999877543
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.17 Score=48.60 Aligned_cols=134 Identities=21% Similarity=0.189 Sum_probs=79.7
Q ss_pred CceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHH
Q 010274 176 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQ 252 (514)
Q Consensus 176 g~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~ 252 (514)
|-.+.+|.+ ....+..++..+.+.+++... .-.+.++||+=+|+|.++...+.+ .++.+|.+........
T Consensus 11 gr~L~~p~~-~~~RPT~drVREalFNil~~~------~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~ 83 (187)
T COG0742 11 GRKLKTPDG-PGTRPTTDRVREALFNILAPD------EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILK 83 (187)
T ss_pred CCcccCCCC-CCcCCCchHHHHHHHHhcccc------ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHH
Confidence 344555543 344566677777777777631 123468999999999999998753 5677777765544333
Q ss_pred HHHHHHcC--CCeEEEeecCCCC-CCCCC--CceEEEecccccc-cccchHHHHH--HHHhhCCCCeEEEEEeC
Q 010274 253 IQFALERG--IPSTLGVLGTKRL-PYPSR--SFELAHCSRCRID-WLQRDGILLL--ELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 253 ~~~A~~rg--~~~~~~~~d~~~l-p~~~~--sFDlV~~s~~~l~-~~~d~~~lL~--el~RvLrPGG~lvis~P 318 (514)
+..+.-+ .+..+...|+... +.... .||+|+.--- .+ -+.+....+. +-..+|+|+|.+++...
T Consensus 84 -~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP-y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 84 -ENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP-YAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred -HHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC-CccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 2233334 4566666775532 21222 4999995431 11 1111122233 35578999999999654
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.025 Score=59.50 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=38.1
Q ss_pred eEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC
Q 010274 218 NVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR 272 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~ 272 (514)
+|||+-||+|.|+..|+. ..|+|+++.+..+..+..+.....-.++.+..+++++
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 799999999999999996 4799999999888777744444333467787665443
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.04 Score=63.22 Aligned_cols=101 Identities=15% Similarity=0.050 Sum_probs=61.4
Q ss_pred CeEEEECCCCchHHHHHhc----------------------------------------------CCCccccCChhhhhH
Q 010274 217 RNVLDVGCGVASFGAYLLS----------------------------------------------HDIIAMSLAPNDVHE 250 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----------------------------------------------~~V~gvdis~~dis~ 250 (514)
..++|.+||+|++.+..+. ..++|+|+++..+..
T Consensus 192 ~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~ 271 (702)
T PRK11783 192 TPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQA 271 (702)
T ss_pred CeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHH
Confidence 5799999999998866541 135677777766655
Q ss_pred HHHHHHHHcCC--CeEEEeecCCCCCCC--CCCceEEEeccccccccc---chHHHHHH---HHhhCCCCeEEEEEeC
Q 010274 251 NQIQFALERGI--PSTLGVLGTKRLPYP--SRSFELAHCSRCRIDWLQ---RDGILLLE---LDRLLRPGGYFVYSSP 318 (514)
Q Consensus 251 a~~~~A~~rg~--~~~~~~~d~~~lp~~--~~sFDlV~~s~~~l~~~~---d~~~lL~e---l~RvLrPGG~lvis~P 318 (514)
+..+. ...|. .+.+.++|..+++.+ .++||+|+++--...-+. +...+..+ ..+...+|+.+++.++
T Consensus 272 A~~N~-~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 272 ARKNA-RRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHH-HHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 55333 33354 367888888777644 357999998742111121 11233333 3344448988877554
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.5 Score=45.90 Aligned_cols=153 Identities=16% Similarity=0.191 Sum_probs=95.0
Q ss_pred CCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCC
Q 010274 187 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIP 262 (514)
Q Consensus 187 ~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~ 262 (514)
.|.+...+....|..-+.. + +-....+||=+|+.+|+...++++ ..+.++++++.... ..+..|.+|. +
T Consensus 53 ~Wnp~RSKLaAaIl~Gl~~----~-pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~r-eLl~~a~~R~-N 125 (231)
T COG1889 53 EWNPRRSKLAAAILKGLKN----F-PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMR-ELLDVAEKRP-N 125 (231)
T ss_pred eeCcchhHHHHHHHcCccc----C-CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHH-HHHHHHHhCC-C
Confidence 3444445554444433331 1 123446899999999988888773 35789999997664 4457777763 3
Q ss_pred eEEEeecCCCCC--C--CCCCceEEEecccccccccch-HHHHHHHHhhCCCCeEEEEEeCC-CCCCChhHHHhHHHHHH
Q 010274 263 STLGVLGTKRLP--Y--PSRSFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYSSPE-AYAHDPENRRIWNAMYD 336 (514)
Q Consensus 263 ~~~~~~d~~~lp--~--~~~sFDlV~~s~~~l~~~~d~-~~lL~el~RvLrPGG~lvis~P~-~~~~~~e~~~~~~~l~~ 336 (514)
+.-+..|+. .| | --+..|+|++--+ .++. +.+..++..-||+||+++++.-. ......+....|++-.+
T Consensus 126 i~PIL~DA~-~P~~Y~~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~ 200 (231)
T COG1889 126 IIPILEDAR-KPEKYRHLVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVE 200 (231)
T ss_pred ceeeecccC-CcHHhhhhcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHH
Confidence 333444442 22 1 1246899985431 2333 55888999999999988876532 11122333456776677
Q ss_pred HHHhcCcEEEEEecc
Q 010274 337 LLKSMCWKIVSKKDQ 351 (514)
Q Consensus 337 ll~~~Gf~~v~~~~~ 351 (514)
-+++.+|++.+..+.
T Consensus 201 kL~~~~f~i~e~~~L 215 (231)
T COG1889 201 KLEEGGFEILEVVDL 215 (231)
T ss_pred HHHhcCceeeEEecc
Confidence 788889998877655
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.12 Score=50.26 Aligned_cols=119 Identities=13% Similarity=0.104 Sum_probs=73.5
Q ss_pred EEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHc-CCCeEEEeecC-CCCCCCCCCceEEEeccccccc
Q 010274 219 VLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGT-KRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 219 VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d~-~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
|.||||-.|.+..+|.+. .++++|+++.-+..+..+.++.. ...+.+..+|. ..++ +.+..|.|+.+. +.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAG--MG- 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAG--MG- 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEE--E--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEec--CC-
Confidence 689999999999999853 57889999887777765554432 22466777774 3343 223368877554 11
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
-.-...+|.+....++..-.|++.-.. ....+++.+.+.||.++...-.
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lILqP~~----------~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLILQPNT----------HAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEEEESS-----------HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHhhHHHhccCCeEEEeCCC----------ChHHHHHHHHHCCCEEEEeEEE
Confidence 112345777777777776677774322 1468899999999998876543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.12 Score=46.87 Aligned_cols=97 Identities=15% Similarity=0.090 Sum_probs=55.0
Q ss_pred CCCCeEEEECCCCchHHHHHhc--------CCCccccCChhhhhHHHHHHHHHcCC----CeEEEeecCCCCCCCCCCce
Q 010274 214 GNIRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGTKRLPYPSRSFE 281 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~--------~~V~gvdis~~dis~a~~~~A~~rg~----~~~~~~~d~~~lp~~~~sFD 281 (514)
....+|+|+|||.|.++..|+. ..|+++|..+.....+. +.+++.+. ...+...+..... .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQ-KRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHH-HHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 3456899999999999998886 36778887775543333 33333331 2233333322221 135567
Q ss_pred EEEecccccccccchH-HHHHHHHhhCCCCeEEEEEeCC
Q 010274 282 LAHCSRCRIDWLQRDG-ILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 282 lV~~s~~~l~~~~d~~-~lL~el~RvLrPGG~lvis~P~ 319 (514)
+++ .+|--.+.. .+|+-..+ ++-.+++..|=
T Consensus 102 ~~v----gLHaCG~Ls~~~l~~~~~---~~~~~l~~vpC 133 (141)
T PF13679_consen 102 ILV----GLHACGDLSDRALRLFIR---PNARFLVLVPC 133 (141)
T ss_pred EEE----EeecccchHHHHHHHHHH---cCCCEEEEcCC
Confidence 777 344455543 34444444 66666655553
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.14 Score=51.74 Aligned_cols=102 Identities=15% Similarity=0.186 Sum_probs=53.7
Q ss_pred CCCeEEEECCCCc--hHHHHHh-----cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC-----------C-
Q 010274 215 NIRNVLDVGCGVA--SFGAYLL-----SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----------Y- 275 (514)
Q Consensus 215 ~~~~VLDIGCGtG--~~a~~La-----~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp-----------~- 275 (514)
.++..||||||-- .....++ ++.|.-+|.+|.-+..+..-.+........++.+|+.+.. +
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 5788999999954 3344443 4578889998876644432222221112667777765421 0
Q ss_pred CCCCceEEEecccccccccc---hHHHHHHHHhhCCCCeEEEEEeC
Q 010274 276 PSRSFELAHCSRCRIDWLQR---DGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 276 ~~~sFDlV~~s~~~l~~~~d---~~~lL~el~RvLrPGG~lvis~P 318 (514)
.++..=+++ ..++||++| +..++..+...|.||.+|+|+..
T Consensus 148 ~~rPVavll--~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 148 FDRPVAVLL--VAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp TTS--EEEE--CT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCCeeeee--eeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 123333333 347888865 47799999999999999999874
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.068 Score=52.86 Aligned_cols=82 Identities=11% Similarity=0.057 Sum_probs=50.4
Q ss_pred EEeecCCCC--CCCCCCceEEEecccc----ccc----------ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHH
Q 010274 265 LGVLGTKRL--PYPSRSFELAHCSRCR----IDW----------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR 328 (514)
Q Consensus 265 ~~~~d~~~l--p~~~~sFDlV~~s~~~----l~~----------~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~ 328 (514)
+..+|..++ .++++++|+|++.--- -.. ..-....+.|+.|+|||||.+++.....
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~-------- 75 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN-------- 75 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc--------
Confidence 344554333 4667888888875210 000 0112468899999999999988633111
Q ss_pred HhHHHHHHHHHhcCcEEEEEecceEEEeccC
Q 010274 329 RIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 359 (514)
Q Consensus 329 ~~~~~l~~ll~~~Gf~~v~~~~~~~iw~Kp~ 359 (514)
....+..++++.||.+. ...+|.|+.
T Consensus 76 -~~~~~~~al~~~GF~l~----~~IiW~K~~ 101 (227)
T PRK13699 76 -RVDRFMAAWKNAGFSVV----GHLVFTKNY 101 (227)
T ss_pred -cHHHHHHHHHHCCCEEe----eEEEEECCC
Confidence 12345667889999865 355899875
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.16 Score=54.03 Aligned_cols=19 Identities=32% Similarity=0.864 Sum_probs=16.6
Q ss_pred CCCCCceEEEeccccccccc
Q 010274 275 YPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 275 ~~~~sFDlV~~s~~~l~~~~ 294 (514)
||+++.++++++. .+||..
T Consensus 158 fP~~Slh~~~Ss~-slHWLS 176 (386)
T PLN02668 158 FPARSIDVFHSAF-SLHWLS 176 (386)
T ss_pred cCCCceEEEEeec-cceecc
Confidence 7889999999988 589975
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.3 Score=47.13 Aligned_cols=134 Identities=13% Similarity=0.057 Sum_probs=71.9
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhhh-------hHHHHHHHHHcC-CCeEEEeecCCCCC-------CCC
Q 010274 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDV-------HENQIQFALERG-IPSTLGVLGTKRLP-------YPS 277 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~di-------s~a~~~~A~~rg-~~~~~~~~d~~~lp-------~~~ 277 (514)
..+|+|+=-|.|.|+..++.. .-....+.+.+. .+.+...+++.. .+....-.+...++ .+.
T Consensus 49 g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~~~~ 128 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDLVPT 128 (238)
T ss_pred CCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccccccc
Confidence 468999999999999998842 112233344333 112222222221 11111111112222 122
Q ss_pred CCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCC----CChhHHH--hHHHHHHHHHhcCcEEEEEecc
Q 010274 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA----HDPENRR--IWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~----~~~e~~~--~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
.++|+++... .+| ......+..++++.|||||.+++.+..... .+..... .-..+....+.+||++..+...
T Consensus 129 ~~~yhdmh~k-~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 129 AQNYHDMHNK-NIH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAESEI 206 (238)
T ss_pred chhhhhhhcc-ccC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeeehh
Confidence 3444444333 222 344477999999999999999987643321 1111111 1136778899999998866554
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.16 Score=53.21 Aligned_cols=129 Identities=17% Similarity=0.109 Sum_probs=78.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHH---cC----CCeEEEeecCCCC-CCCCCCceE
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE---RG----IPSTLGVLGTKRL-PYPSRSFEL 282 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~---rg----~~~~~~~~d~~~l-p~~~~sFDl 282 (514)
..++||=+|.|.|.-++.|.+. +|+-+|++|.+++-+.-+.... .+ .++.++..|+.+. .-..+.||.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 3478999999999999999853 4666777666654333111111 11 2345555454332 233468999
Q ss_pred EEecccccccccch-----HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEE
Q 010274 283 AHCSRCRIDWLQRD-----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 283 V~~s~~~l~~~~d~-----~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~ 348 (514)
|+.-. .-+-.+.. .++..-+.|.|+++|.+++..-+.|.... .|-.+.+.++++||.+.-.
T Consensus 369 vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~----vfw~i~aTik~AG~~~~Py 434 (508)
T COG4262 369 VIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPR----VFWRIDATIKSAGYRVWPY 434 (508)
T ss_pred EEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCc----eeeeehhHHHhCcceeeee
Confidence 98542 11111111 34777888999999999986655443221 1335678899999876543
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.069 Score=51.70 Aligned_cols=99 Identities=21% Similarity=0.270 Sum_probs=51.7
Q ss_pred eEEEECCCCchHHHHHhc----CCCccccCChh--hhhHHHHHHHHHcCC-----CeEEEeec-CCCCC--CCCCC-ceE
Q 010274 218 NVLDVGCGVASFGAYLLS----HDIIAMSLAPN--DVHENQIQFALERGI-----PSTLGVLG-TKRLP--YPSRS-FEL 282 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~----~~V~gvdis~~--dis~a~~~~A~~rg~-----~~~~~~~d-~~~lp--~~~~s-FDl 282 (514)
.+.|||||.|.+...|+. .-++|++|--. |.-++.++..+.... ++.+...+ ..-+| |..+. +-+
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskm 142 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKM 142 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccc
Confidence 499999999999999984 45777776322 333444444443211 12222111 11122 11111 111
Q ss_pred EEecccccccccc-------hHHHHHHHHhhCCCCeEEEEEe
Q 010274 283 AHCSRCRIDWLQR-------DGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 283 V~~s~~~l~~~~d-------~~~lL~el~RvLrPGG~lvis~ 317 (514)
.++.. --|+-.. ...++.+..-+|++||.++..+
T Consensus 143 ff~fp-dpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 143 FFLFP-DPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred eeecC-ChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22211 0111110 1348899999999999999754
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.11 Score=54.49 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=38.8
Q ss_pred CCCCeEEEECCCCchHHHHHhcC--------------------CCccccCChhhhhHHHHHHHHH-----cCCCeEE-Ee
Q 010274 214 GNIRNVLDVGCGVASFGAYLLSH--------------------DIIAMSLAPNDVHENQIQFALE-----RGIPSTL-GV 267 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~--------------------~V~gvdis~~dis~a~~~~A~~-----rg~~~~~-~~ 267 (514)
.+.-+|+|+||.+|..+..+... .|.--|+-.+|.+.-....... ...++.. .+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 44568999999999877666521 2333455555554333222111 1222222 12
Q ss_pred -ecCCCCCCCCCCceEEEeccccccccc
Q 010274 268 -LGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 268 -~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
+....--||+++.|+++++. .+||+.
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~-alHWLS 121 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSY-ALHWLS 121 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES--TTB-S
T ss_pred CchhhhccCCCCceEEEEEec-hhhhcc
Confidence 22333337889999999888 588864
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.22 Score=52.70 Aligned_cols=102 Identities=17% Similarity=0.217 Sum_probs=70.7
Q ss_pred CeEEEECCCCchHHHHHh--cCC-----------------------------------------CccccCChhhhhHHHH
Q 010274 217 RNVLDVGCGVASFGAYLL--SHD-----------------------------------------IIAMSLAPNDVHENQI 253 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La--~~~-----------------------------------------V~gvdis~~dis~a~~ 253 (514)
..++|-=||+|++.+..+ ..+ +.|+|+++..+..|.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak- 271 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK- 271 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH-
Confidence 479999999999987765 221 458888888776665
Q ss_pred HHHHHcCCC--eEEEeecCCCCCCCCCCceEEEecccccccccch-------HHHHHHHHhhCCCCeEEEEEeCC
Q 010274 254 QFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD-------GILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 254 ~~A~~rg~~--~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~-------~~lL~el~RvLrPGG~lvis~P~ 319 (514)
..|++.|+. +.|.++|+..++-+-+.+|+|+|+----.-+.+. ..+.+.+.+.++--+.++|+++.
T Consensus 272 ~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e 346 (381)
T COG0116 272 ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSE 346 (381)
T ss_pred HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEccH
Confidence 556666764 7899999888864447899999863111111111 23556777888888889988754
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.073 Score=50.02 Aligned_cols=68 Identities=22% Similarity=0.256 Sum_probs=43.6
Q ss_pred eEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCC--CCCCC-ceEEEec
Q 010274 218 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP--YPSRS-FELAHCS 286 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp--~~~~s-FDlV~~s 286 (514)
.|+|+.||.|..+..++.. .|+++|+++.-+.-++ ..|+--|+ ++.++.+|..++. +.... ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~-hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK-HNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH-HHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999964 5899998887665554 44555564 5788888854432 11122 8999975
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.075 Score=54.66 Aligned_cols=74 Identities=12% Similarity=-0.033 Sum_probs=49.1
Q ss_pred CeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC--CCC--CCceEEEecc
Q 010274 217 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPS--RSFELAHCSR 287 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp--~~~--~sFDlV~~s~ 287 (514)
..+||.+||.|..+..++. ..|+|+|.++.++..+..... + ..++.+...+...+. .++ .+||.|++..
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~-~-~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK-P-FGRFTLVHGNFSNLKEVLAEGLGKVDGILLDL 98 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc-c-CCcEEEEeCCHHHHHHHHHcCCCccCEEEECC
Confidence 4899999999999999884 357888877766655442222 1 335777777765542 121 2799999865
Q ss_pred ccccc
Q 010274 288 CRIDW 292 (514)
Q Consensus 288 ~~l~~ 292 (514)
.+..+
T Consensus 99 GvSs~ 103 (296)
T PRK00050 99 GVSSP 103 (296)
T ss_pred Ccccc
Confidence 44444
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.31 Score=49.61 Aligned_cols=102 Identities=11% Similarity=0.132 Sum_probs=56.4
Q ss_pred CCCeEEEECCCCchHHHHH-hc-----CCCccccCChhhhhHHHHHHHH---HcCCCeEEEeecCCCCCCCCCCceEEEe
Q 010274 215 NIRNVLDVGCGVASFGAYL-LS-----HDIIAMSLAPNDVHENQIQFAL---ERGIPSTLGVLGTKRLPYPSRSFELAHC 285 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L-a~-----~~V~gvdis~~dis~a~~~~A~---~rg~~~~~~~~d~~~lp~~~~sFDlV~~ 285 (514)
.+++|+=||||.=-++..+ +. ..|+++|+++.....+. +... ..+....+..+|....+..-..||+|+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~-~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELAR-RLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHH-HHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 4569999999977555444 32 23668888877665554 2222 2245678888887766655468999986
Q ss_pred cccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 286 s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+..+-.-..+...+|..+.+.++||..+++..
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 65221112366889999999999999999864
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.052 Score=55.46 Aligned_cols=125 Identities=22% Similarity=0.270 Sum_probs=73.3
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCC-eEEEeecCCCC-C-CCCCCceEEEe--
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRL-P-YPSRSFELAHC-- 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~-~~~~~~d~~~l-p-~~~~sFDlV~~-- 285 (514)
..+|||+.+|.|.=+..+++ ..+++.|++..-+..-. ..++..|.. +.....|.... + .....||.|+.
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~-~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDa 164 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK-ENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDA 164 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-HHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEEC
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH-HHHHhcCCceEEEEeeccccccccccccccchhhcCC
Confidence 35799999999987777763 35777777765443332 333444554 44444554444 1 22346999996
Q ss_pred --cc-cccccccc----------------hHHHHHHHHhhC----CCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc-
Q 010274 286 --SR-CRIDWLQR----------------DGILLLELDRLL----RPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM- 341 (514)
Q Consensus 286 --s~-~~l~~~~d----------------~~~lL~el~RvL----rPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~- 341 (514)
|. .++...++ ...+|..+.+.+ ||||++++++-.... +| .-..++..+++.
T Consensus 165 PCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~--eE---NE~vV~~fl~~~~ 239 (283)
T PF01189_consen 165 PCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP--EE---NEEVVEKFLKRHP 239 (283)
T ss_dssp SCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG--GG---THHHHHHHHHHST
T ss_pred CccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH--HH---HHHHHHHHHHhCC
Confidence 21 11111111 134899999999 999999998854321 11 123455666665
Q ss_pred CcEEE
Q 010274 342 CWKIV 346 (514)
Q Consensus 342 Gf~~v 346 (514)
.|+.+
T Consensus 240 ~~~l~ 244 (283)
T PF01189_consen 240 DFELV 244 (283)
T ss_dssp SEEEE
T ss_pred CcEEE
Confidence 45444
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.13 Score=51.74 Aligned_cols=100 Identities=16% Similarity=0.131 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHH---cCCCeEEEe
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALE---RGIPSTLGV 267 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~---rg~~~~~~~ 267 (514)
....+.+.+.+... +...|||||+|+|.++..|++ ..++++++++.. .+..++ ...++.++.
T Consensus 16 ~~~~~~Iv~~~~~~--------~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~-----~~~L~~~~~~~~~~~vi~ 82 (262)
T PF00398_consen 16 PNIADKIVDALDLS--------EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDL-----AKHLKERFASNPNVEVIN 82 (262)
T ss_dssp HHHHHHHHHHHTCG--------TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHH-----HHHHHHHCTTCSSEEEEE
T ss_pred HHHHHHHHHhcCCC--------CCCEEEEeCCCCccchhhHhcccCcceeecCcHhH-----HHHHHHHhhhcccceeee
Confidence 45666777777542 346899999999999999985 467888777643 344344 245788888
Q ss_pred ecCCCCCCCC---CCceEEEecccccccccchHHHHHHHHhhCCC
Q 010274 268 LGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRP 309 (514)
Q Consensus 268 ~d~~~lp~~~---~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrP 309 (514)
.|...+.... +.-..|+++ +.+ .-...++..+...-+.
T Consensus 83 ~D~l~~~~~~~~~~~~~~vv~N---lPy-~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 83 GDFLKWDLYDLLKNQPLLVVGN---LPY-NISSPILRKLLELYRF 123 (262)
T ss_dssp S-TTTSCGGGHCSSSEEEEEEE---ETG-TGHHHHHHHHHHHGGG
T ss_pred cchhccccHHhhcCCceEEEEE---ecc-cchHHHHHHHhhcccc
Confidence 8888777553 344556643 333 1123466666654343
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.088 Score=50.41 Aligned_cols=91 Identities=13% Similarity=0.212 Sum_probs=62.3
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHc-----CCCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~r-----g~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
..+.|+|+|+|.++...+. ..|++++.+|.-. ..|.+. ..+..++++|+....| ..-|+|+|-..-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a-----~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRA-----RLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHH-----HHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhh
Confidence 3699999999988776653 3688887766432 344443 2357888888888887 367999985410
Q ss_pred ccc-ccchHHHHHHHHhhCCCCeEEE
Q 010274 290 IDW-LQRDGILLLELDRLLRPGGYFV 314 (514)
Q Consensus 290 l~~-~~d~~~lL~el~RvLrPGG~lv 314 (514)
-.. .+.....+..+..-||-.+.++
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCccc
Confidence 111 1233457888888999999887
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.085 Score=57.38 Aligned_cols=55 Identities=25% Similarity=0.430 Sum_probs=43.5
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCC
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKR 272 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~ 272 (514)
..+||+-||||.++..++. ..|+|+++++.++..|.. .|...| .++.|+++-+++
T Consensus 385 k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~-nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEK-NAQINGISNATFIVGQAED 442 (534)
T ss_pred cEEEEEeecCCceehhhhccccceeeeecChhhcchhhh-cchhcCccceeeeecchhh
Confidence 6799999999999999996 479999999999888774 444445 467888874443
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.019 Score=49.12 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=38.2
Q ss_pred EEECCCCchHHHHHhcC-------CCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCC--CCCCCCceEEEeccc
Q 010274 220 LDVGCGVASFGAYLLSH-------DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL--PYPSRSFELAHCSRC 288 (514)
Q Consensus 220 LDIGCGtG~~a~~La~~-------~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~l--p~~~~sFDlV~~s~~ 288 (514)
||||+..|..+..++.. .++++|..+. .+...+..++.+ ..+.+..++..+. .++.++||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999888777631 4677877663 112223333222 2467777765332 12357899999543
Q ss_pred ccccccchHHHHHHHHhhCCCCeEEEEE
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~lvis 316 (514)
-|-.+.....+..+.+.|+|||.+++-
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 232344456889999999999999874
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=93.40 E-value=1.8 Score=43.18 Aligned_cols=129 Identities=16% Similarity=0.137 Sum_probs=71.0
Q ss_pred CCeEEEECCCCc-hHHHHHh--cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC-CCCC-CCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVA-SFGAYLL--SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYP-SRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG-~~a~~La--~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~-lp~~-~~sFDlV~~s~~~l 290 (514)
+++||=||=.-- +++..|. ..+|+.+|++..-+.-- .+.|++.|.++.....|... +|-. .++||++++--
T Consensus 45 gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI-~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP--- 120 (243)
T PF01861_consen 45 GKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFI-NRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP--- 120 (243)
T ss_dssp T-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHH-HHHHHHHT--EEEE---TTS---TTTSS-BSEEEE-----
T ss_pred CCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHH-HHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC---
Confidence 468999996654 4455554 35788888877655333 35677778888888887543 3421 37899999653
Q ss_pred ccc-cchHHHHHHHHhhCCCCe-EEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecce
Q 010274 291 DWL-QRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQT 352 (514)
Q Consensus 291 ~~~-~d~~~lL~el~RvLrPGG-~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (514)
.+. .....++......||..| ..+++. .+.+.....|.++++.+.++||.+.......
T Consensus 121 PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~----~~~~~s~~~~~~~Q~~l~~~gl~i~dii~~F 180 (243)
T PF01861_consen 121 PYTPEGLKLFLSRGIEALKGEGCAGYFGF----THKEASPDKWLEVQRFLLEMGLVITDIIPDF 180 (243)
T ss_dssp -SSHHHHHHHHHHHHHTB-STT-EEEEEE-----TTT--HHHHHHHHHHHHTS--EEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCceEEEEE----ecCcCcHHHHHHHHHHHHHCCcCHHHHHhhh
Confidence 233 233568899999998766 433322 2222235568899999999999887765553
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.22 Score=49.19 Aligned_cols=100 Identities=16% Similarity=0.270 Sum_probs=58.6
Q ss_pred ccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHH----HHHhcCCCccccCChhhhhHHHHHHHHHcCCC--e
Q 010274 190 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFG----AYLLSHDIIAMSLAPNDVHENQIQFALERGIP--S 263 (514)
Q Consensus 190 ~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a----~~La~~~V~gvdis~~dis~a~~~~A~~rg~~--~ 263 (514)
++...|++.+++++....+.++ ++.-++||||.|.-.+- ...-+-..+|.|+++..++.+........+.. +
T Consensus 55 PgRAdYih~laDLL~s~~g~~~--~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I 132 (292)
T COG3129 55 PGRADYIHHLADLLASTSGQIP--GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAI 132 (292)
T ss_pred CChhHHHHHHHHHHHhcCCCCC--cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhhe
Confidence 5678899999999987766555 34468999998865432 22223355667776666665554444332322 2
Q ss_pred EEEeecCCCCCC-----CCCCceEEEecccccc
Q 010274 264 TLGVLGTKRLPY-----PSRSFELAHCSRCRID 291 (514)
Q Consensus 264 ~~~~~d~~~lp~-----~~~sFDlV~~s~~~l~ 291 (514)
.+......+--| ..+.||++.|+--.+.
T Consensus 133 ~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 133 RLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred eEEeccCccccccccccccceeeeEecCCCcch
Confidence 222221111112 2568999999874333
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.38 Score=49.49 Aligned_cols=94 Identities=16% Similarity=0.270 Sum_probs=49.5
Q ss_pred cHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHh----cCCCccccCChhhhhHHHHHHHHHcCC--CeE
Q 010274 191 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGI--PST 264 (514)
Q Consensus 191 ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La----~~~V~gvdis~~dis~a~~~~A~~rg~--~~~ 264 (514)
+...|+..+.+++.......+ ..-++||||+|...+-..|. +-.++|.|+++..+..|.....+..+. .+.
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~---~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~ 157 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIP---EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIE 157 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS------EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEE
T ss_pred hhHHHHHHHHHHhhccccccc---cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceE
Confidence 456789999998876533221 14589999999875433333 457788888888887777555554233 344
Q ss_pred EEeecCC-C----CCCCCCCceEEEecc
Q 010274 265 LGVLGTK-R----LPYPSRSFELAHCSR 287 (514)
Q Consensus 265 ~~~~d~~-~----lp~~~~sFDlV~~s~ 287 (514)
+...... . +-.+++.||+.+|+-
T Consensus 158 l~~~~~~~~i~~~i~~~~e~~dftmCNP 185 (299)
T PF05971_consen 158 LRKQKNPDNIFDGIIQPNERFDFTMCNP 185 (299)
T ss_dssp EEE--ST-SSTTTSTT--S-EEEEEE--
T ss_pred EEEcCCccccchhhhcccceeeEEecCC
Confidence 4333211 1 122346899999975
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.55 Score=49.10 Aligned_cols=99 Identities=19% Similarity=0.143 Sum_probs=54.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhhhhHHHHHH----HHHcCC-----CeEEEeecCCCCCCC-CCC
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQF----ALERGI-----PSTLGVLGTKRLPYP-SRS 279 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvdis~~dis~a~~~~----A~~rg~-----~~~~~~~d~~~lp~~-~~s 279 (514)
.+++|||+|.|.|.-..++-+. .++.++. +.+..+. +..-+. +..-++. .+++++ ...
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~-----sp~lrkV~~tl~~nv~t~~td~r~s~vt~--dRl~lp~ad~ 185 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEA-----SPALRKVGDTLAENVSTEKTDWRASDVTE--DRLSLPAADL 185 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhcc-----CHHHHHHHHHHHhhcccccCCCCCCccch--hccCCCccce
Confidence 4567999999998765554431 2222332 2222222 221111 1111222 344443 246
Q ss_pred ceEEEecccccccccch--HHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 280 FELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 280 FDlV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
|++|+...-+++.-... ...++.+..+++|||.|+|..+..
T Consensus 186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 88887665433322211 348899999999999999988754
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.2 Score=44.91 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=28.1
Q ss_pred eEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHH
Q 010274 218 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQ 254 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~ 254 (514)
++||||||.|.++..++. ..++++|.++......+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHH
Confidence 489999999999988874 2588888887766555433
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.36 Score=44.21 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=58.5
Q ss_pred CccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCC-C-CCCCceEEEeccccccccc-----ch---HHHHHHHHhh
Q 010274 238 IIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-Y-PSRSFELAHCSRCRIDWLQ-----RD---GILLLELDRL 306 (514)
Q Consensus 238 V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp-~-~~~sFDlV~~s~~~l~~~~-----d~---~~lL~el~Rv 306 (514)
|.+.||-...+............. ++.++..+-+.+. + +.+++|+|+.+..-++..+ .+ -..++.+.++
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~l 81 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALEL 81 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHh
Confidence 567777666665554333332222 3666655544443 2 3348999997755444321 11 3489999999
Q ss_pred CCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHh---cCcEEEEEe
Q 010274 307 LRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS---MCWKIVSKK 349 (514)
Q Consensus 307 LrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~---~Gf~~v~~~ 349 (514)
|+|||.+.+..- ...+...+..+.+.+.++. ..|.+...+
T Consensus 82 L~~gG~i~iv~Y---~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~ 124 (140)
T PF06962_consen 82 LKPGGIITIVVY---PGHPGGKEESEAVEEFLASLDQKEFNVLKYQ 124 (140)
T ss_dssp EEEEEEEEEEE-----STCHHHHHHHHHHHHHHTS-TTTEEEEEEE
T ss_pred hccCCEEEEEEe---CCCCCCHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 999999999763 2233444444555555554 456665433
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=91.60 E-value=2.3 Score=39.99 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=71.4
Q ss_pred ECCCCchHHHHHhcC-----CCccccCChhhh-------hHHHHHHHHHcCCCeEEEeecCCCCC----CCCCCceEEEe
Q 010274 222 VGCGVASFGAYLLSH-----DIIAMSLAPNDV-------HENQIQFALERGIPSTLGVLGTKRLP----YPSRSFELAHC 285 (514)
Q Consensus 222 IGCGtG~~a~~La~~-----~V~gvdis~~di-------s~a~~~~A~~rg~~~~~~~~d~~~lp----~~~~sFDlV~~ 285 (514)
||=|.=+|+..|+.. .+++..+...+. ....++..++.|..+.+. .|+..+. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEEE
Confidence 566666788888742 445544433221 112222334445555443 3555543 24578999996
Q ss_pred ccccccccc------c---------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 286 SRCRIDWLQ------R---------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 286 s~~~l~~~~------d---------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
++- |.. + ...+++.+.++|+++|.+.++.-....+ ..| .++.++++.|+.+++...
T Consensus 82 NFP---H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py-----~~W-~i~~lA~~~gl~l~~~~~ 152 (166)
T PF10354_consen 82 NFP---HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY-----DSW-NIEELAAEAGLVLVRKVP 152 (166)
T ss_pred eCC---CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC-----ccc-cHHHHHHhcCCEEEEEec
Confidence 652 222 0 1338899999999999999987543221 224 467899999998886543
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.59 Score=47.61 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=47.8
Q ss_pred EEEeecCCCC--CCCCCCceEEEecccc-c--c------------cccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChh
Q 010274 264 TLGVLGTKRL--PYPSRSFELAHCSRCR-I--D------------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE 326 (514)
Q Consensus 264 ~~~~~d~~~l--p~~~~sFDlV~~s~~~-l--~------------~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e 326 (514)
.+..+|.... .+++++||+|+++--. . . |..-....+.++.|+|||||.+++......
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~----- 84 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTEN----- 84 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchh-----
Confidence 3455554432 3557789999984210 0 0 111124689999999999999998642211
Q ss_pred HHHhHHHHHHHHHhcCcEEEEEecceEEEeccC
Q 010274 327 NRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 359 (514)
Q Consensus 327 ~~~~~~~l~~ll~~~Gf~~v~~~~~~~iw~Kp~ 359 (514)
.. ...++.+.||... ...||+|+.
T Consensus 85 ----~~-~~~~~~~~~f~~~----~~iiW~k~~ 108 (284)
T PRK11524 85 ----MP-FIDLYCRKLFTIK----SRIVWSYDS 108 (284)
T ss_pred ----hh-HHHHHHhcCcceE----EEEEEEeCC
Confidence 11 1234455677643 456899864
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.59 E-value=1.1 Score=47.91 Aligned_cols=128 Identities=21% Similarity=0.264 Sum_probs=71.5
Q ss_pred CCCCeEEEECCCCchHHHHHh----c-CCCccccCChhhhhHHHHHHHHHcCCC-eEEEeecCCCCC---CCCCCceEEE
Q 010274 214 GNIRNVLDVGCGVASFGAYLL----S-HDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLP---YPSRSFELAH 284 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La----~-~~V~gvdis~~dis~a~~~~A~~rg~~-~~~~~~d~~~lp---~~~~sFDlV~ 284 (514)
..+.||||+.+..|.=+.++| + ..|.+.|.+..-+.. ..+.+.+.|.. ......|...+| ++. +||-|.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~-l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKS-LKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHH-HHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 345789999999996555544 2 234555554433322 22334444554 344555555554 444 899998
Q ss_pred ----eccc-cc----------------ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc-C
Q 010274 285 ----CSRC-RI----------------DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-C 342 (514)
Q Consensus 285 ----~s~~-~l----------------~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~-G 342 (514)
||.. ++ .+..-..++|..+..++++||+|+.++-.......+ ..+.-++++. .
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE-----~vV~yaL~K~p~ 392 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENE-----AVVDYALKKRPE 392 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhH-----HHHHHHHHhCCc
Confidence 3320 00 011112458889999999999999988654321111 1334445554 5
Q ss_pred cEEEEE
Q 010274 343 WKIVSK 348 (514)
Q Consensus 343 f~~v~~ 348 (514)
++++..
T Consensus 393 ~kL~p~ 398 (460)
T KOG1122|consen 393 VKLVPT 398 (460)
T ss_pred eEeccc
Confidence 555543
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.68 E-value=1.9 Score=43.29 Aligned_cols=102 Identities=21% Similarity=0.242 Sum_probs=55.2
Q ss_pred CCeEEEECCCCchHHHHHh---cCCCccccCChhh--hhHH--HHHHHH-HcCCCeEEEeec---CCCCCCCCCC-ceEE
Q 010274 216 IRNVLDVGCGVASFGAYLL---SHDIIAMSLAPND--VHEN--QIQFAL-ERGIPSTLGVLG---TKRLPYPSRS-FELA 283 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La---~~~V~gvdis~~d--is~a--~~~~A~-~rg~~~~~~~~d---~~~lp~~~~s-FDlV 283 (514)
..+||++|+|+|..+...+ ..++...|..... +... ..+.+. +.|..+.....+ .....+-... ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 4579999999996665554 2344444432211 1111 000111 112233222222 1111111123 9999
Q ss_pred EecccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 284 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 284 ~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
+++.+ +.....++.++.-+...|-.+|.+++..+
T Consensus 167 lasDv-vy~~~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 167 LASDV-VYEEESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEeee-eecCCcchhHHHHHHHHHhcCCeEEEEEe
Confidence 99986 44456677899999999999997666553
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.62 E-value=2 Score=45.22 Aligned_cols=120 Identities=23% Similarity=0.212 Sum_probs=64.9
Q ss_pred HHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC--------CCccccCChhhhhHHHHHHHHHcCC--CeE
Q 010274 195 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--------DIIAMSLAPNDVHENQIQFALERGI--PST 264 (514)
Q Consensus 195 y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--------~V~gvdis~~dis~a~~~~A~~rg~--~~~ 264 (514)
|....+.+++-..-.+.++ .+|||+.+..|+=++.|.++ .|++=|+++.-. .++.....+-. ...
T Consensus 138 ~rqeavSmlPvL~L~v~p~---~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~--~~L~~q~~~l~~~~~~ 212 (375)
T KOG2198|consen 138 YRQEAVSMLPVLALGVKPG---DKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRL--NMLVHQLKRLPSPNLL 212 (375)
T ss_pred hhhhhhhccchhhcccCCC---CeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHH--HHHHHHHhccCCccee
Confidence 4445666776544334333 57999999999888777752 344444443222 12222223321 122
Q ss_pred EEeecCCCCC---------CCCCCceEEEe----ccc-ccccccc-----------------hHHHHHHHHhhCCCCeEE
Q 010274 265 LGVLGTKRLP---------YPSRSFELAHC----SRC-RIDWLQR-----------------DGILLLELDRLLRPGGYF 313 (514)
Q Consensus 265 ~~~~d~~~lp---------~~~~sFDlV~~----s~~-~l~~~~d-----------------~~~lL~el~RvLrPGG~l 313 (514)
+...++...| .....||-|+| +.. .+....+ .-.+|....++||+||.+
T Consensus 213 v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~l 292 (375)
T KOG2198|consen 213 VTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRL 292 (375)
T ss_pred eecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEE
Confidence 2222222222 23346999987 111 1111110 123788899999999999
Q ss_pred EEEeCC
Q 010274 314 VYSSPE 319 (514)
Q Consensus 314 vis~P~ 319 (514)
+.|+-.
T Consensus 293 VYSTCS 298 (375)
T KOG2198|consen 293 VYSTCS 298 (375)
T ss_pred EEeccC
Confidence 998854
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=88.86 E-value=0.25 Score=43.31 Aligned_cols=38 Identities=21% Similarity=0.575 Sum_probs=27.4
Q ss_pred CceEEEecccccccc-----cc-hHHHHHHHHhhCCCCeEEEEEe
Q 010274 279 SFELAHCSRCRIDWL-----QR-DGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 279 sFDlV~~s~~~l~~~-----~d-~~~lL~el~RvLrPGG~lvis~ 317 (514)
.||+|.|.. +.-|+ ++ ...+++.+.+.|+|||.|++.-
T Consensus 1 ~yDvilclS-VtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLS-VTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEE-eeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 489999865 44443 12 2559999999999999999854
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.59 E-value=1.3 Score=46.45 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=58.9
Q ss_pred CCeEEEECCC-CchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCG-VASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+|+=+|+| .|..+..++. ++|+++ +.++...+.|++.|....+.-.+.....--.+.||+|+..-
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~-----~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv---- 237 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAI-----TRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV---- 237 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEE-----eCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC----
Confidence 4678888887 3456666664 455555 55666678888887765444222222221123499998432
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
. ...+....+.||+||.+++..-.
T Consensus 238 --~--~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 --G--PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred --C--hhhHHHHHHHHhcCCEEEEECCC
Confidence 1 35788899999999999987643
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=87.50 E-value=0.97 Score=44.11 Aligned_cols=99 Identities=10% Similarity=0.027 Sum_probs=49.8
Q ss_pred CCeEEEECCCCchHHHHHh--------cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC-------C-CCCC
Q 010274 216 IRNVLDVGCGVASFGAYLL--------SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-------Y-PSRS 279 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La--------~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp-------~-~~~s 279 (514)
++.|+|+|.-.|.-+.+++ .+.|+++|+.........++. .-....+.+.++|..... . ....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~-hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES-HPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh-ccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 4689999999887665554 257899999544432222111 001246788888754321 1 1123
Q ss_pred ceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 280 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 280 FDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
-.+|+ -. ..|...+....|+....++++|+|+++.+
T Consensus 112 ~vlVi-lD-s~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 112 PVLVI-LD-SSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp SEEEE-ES-S----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred ceEEE-EC-CCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 34555 22 34445566677888999999999999854
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.39 E-value=5 Score=38.78 Aligned_cols=90 Identities=21% Similarity=0.243 Sum_probs=50.8
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEee-cCCC--------CCCCCCCce
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVL-GTKR--------LPYPSRSFE 281 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~-d~~~--------lp~~~~sFD 281 (514)
..+|||+||..|+++.-..+ ..|.|+|+-....-+ | +.+..+ |..+ ..+++...|
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~---------G--a~~i~~~dvtdp~~~~ki~e~lp~r~Vd 138 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPE---------G--ATIIQGNDVTDPETYRKIFEALPNRPVD 138 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCC---------C--cccccccccCCHHHHHHHHHhCCCCccc
Confidence 46899999999999877664 246677764432211 1 111111 2111 013567899
Q ss_pred EEEeccccccc----ccch-------HHHHHHHHhhCCCCeEEEEEe
Q 010274 282 LAHCSRCRIDW----LQRD-------GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 282 lV~~s~~~l~~----~~d~-------~~lL~el~RvLrPGG~lvis~ 317 (514)
+|++-+ +..- +.|. ..++.-....++|+|.|+.-.
T Consensus 139 vVlSDM-apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 139 VVLSDM-APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred EEEecc-CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 999643 1111 1111 224445556788999999855
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=86.84 E-value=3.2 Score=41.64 Aligned_cols=129 Identities=22% Similarity=0.270 Sum_probs=67.6
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
+.+|+|||||.=-++..... ..+++.||+...+.--. .+....+.+..+.+.|...-+ +....|+++..- +++
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~-~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK-~lp 182 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLN-AFLAVLGVPHDARVRDLLSDP-PKEPADLALLLK-TLP 182 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHH-HHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET--HH
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHH-HHHHhhCCCcceeEeeeeccC-CCCCcchhhHHH-HHH
Confidence 57899999999999887663 24556665544332111 222344677777777765554 335789998654 455
Q ss_pred cccchHH-HHHHHHhhCCCCeEEEEEeCCC-C-CCChhHHHhH-HHHHHHHHhcCcEEEEE
Q 010274 292 WLQRDGI-LLLELDRLLRPGGYFVYSSPEA-Y-AHDPENRRIW-NAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 292 ~~~d~~~-lL~el~RvLrPGG~lvis~P~~-~-~~~~e~~~~~-~~l~~ll~~~Gf~~v~~ 348 (514)
-++.... .-.++.+.++- =++++|.|.- . .+.......+ ..++.++..-+|.+.+.
T Consensus 183 ~le~q~~g~g~~ll~~~~~-~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~ 242 (251)
T PF07091_consen 183 CLERQRRGAGLELLDALRS-PHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRL 242 (251)
T ss_dssp HHHHHSTTHHHHHHHHSCE-SEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEE
T ss_pred HHHHHhcchHHHHHHHhCC-CeEEEeccccccccCccccccCHHHHHHHhcccCCceeeee
Confidence 4443311 22333333332 2566666632 1 1111112222 46788888889885443
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=85.70 E-value=0.98 Score=42.40 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=44.2
Q ss_pred CCceEEEeccccccccc--------ch---HHHHHHHHhhCCCCeEEEEEeCCCCCCChhH-HHhHHHHHHHHHhcCcEE
Q 010274 278 RSFELAHCSRCRIDWLQ--------RD---GILLLELDRLLRPGGYFVYSSPEAYAHDPEN-RRIWNAMYDLLKSMCWKI 345 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~~--------d~---~~lL~el~RvLrPGG~lvis~P~~~~~~~e~-~~~~~~l~~ll~~~Gf~~ 345 (514)
++||.+.|.. +++|.. |+ ...+.++.++|||||.|+++.|---....-+ .+.+..+.-.+--.||+.
T Consensus 62 ~~fD~~as~~-siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~ 140 (177)
T PF03269_consen 62 GSFDFAASFS-SIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEW 140 (177)
T ss_pred ccchhhheec-hhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEE
Confidence 6899998655 566541 11 4589999999999999999988432111111 123334444455568887
Q ss_pred EEE
Q 010274 346 VSK 348 (514)
Q Consensus 346 v~~ 348 (514)
+..
T Consensus 141 i~t 143 (177)
T PF03269_consen 141 IDT 143 (177)
T ss_pred Eee
Confidence 764
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=84.91 E-value=0.98 Score=44.73 Aligned_cols=111 Identities=17% Similarity=0.226 Sum_probs=62.9
Q ss_pred CCeEEEECCCCchHHHHHhcC-------------CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC--------
Q 010274 216 IRNVLDVGCGVASFGAYLLSH-------------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-------- 274 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-------------~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp-------- 274 (514)
.++++|+.+..|+++..|.+. .|+++|+-+... ...+...++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP-----------I~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP-----------IEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc-----------cCceEEeecccCCHhHHHHHHHH
Confidence 468999999999999888731 155565544221 112344555544321
Q ss_pred CCCCCceEEEeccc----ccccccch------HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc
Q 010274 275 YPSRSFELAHCSRC----RIDWLQRD------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 341 (514)
Q Consensus 275 ~~~~sFDlV~~s~~----~l~~~~d~------~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~ 341 (514)
|..+.-|+|+|-.+ -+|-+... -..|.-...+|||||.|+--. .+.......+..++.++++.
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi----fRg~~tslLysql~~ff~kv 183 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI----FRGRDTSLLYSQLRKFFKKV 183 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh----hccCchHHHHHHHHHHhhce
Confidence 55568899998431 12322221 224556678999999998422 12222222345566665553
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.84 E-value=2.1 Score=47.08 Aligned_cols=126 Identities=13% Similarity=0.123 Sum_probs=75.0
Q ss_pred CCeEEEECCCCchHHHHHhc------C--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS------H--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~------~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~ 287 (514)
...|+=+|+|-|-+.....+ + .+.+++-.|+++..-+-..-+.-...+.++..|...++-+....|++++ .
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-E 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-E 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-H
Confidence 45688999999977655442 2 4556766776654332211122244678888898888855678999984 3
Q ss_pred cccccccc-h--HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCc
Q 010274 288 CRIDWLQR-D--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 343 (514)
Q Consensus 288 ~~l~~~~d-~--~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf 343 (514)
++.-..| . .+.|..+.+.|||.|..+=+.-..|-..-.....|.++.+.-....|
T Consensus 447 -LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~v~a~~~~~~f 504 (649)
T KOG0822|consen 447 -LLGSFGDNELSPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQEVKATNDPNAF 504 (649)
T ss_pred -hhccccCccCCHHHHHHHHhhcCCCceEccchhhhhhcccccHHHHHHHHhcCCcccc
Confidence 2332322 2 45999999999999876622211121222223456666665553333
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.80 E-value=2.5 Score=48.17 Aligned_cols=59 Identities=14% Similarity=0.007 Sum_probs=40.6
Q ss_pred CCceEEEecccccccccch--HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEE
Q 010274 278 RSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~ 348 (514)
..||+++.-...-...++. ..+|.++.|+++|||.|.=.+. -..+++-|..+||++.+.
T Consensus 165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~------------a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS------------AGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh------------HHHHHHHHHHcCCeeeec
Confidence 4699998543112122222 6699999999999999983221 236788899999988754
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.91 E-value=30 Score=34.18 Aligned_cols=119 Identities=11% Similarity=0.078 Sum_probs=74.6
Q ss_pred eEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCC-CCCCceEEEecccccc
Q 010274 218 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY-PSRSFELAHCSRCRID 291 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~-~~~sFDlV~~s~~~l~ 291 (514)
++.||||-.|.+..+|.. ..+++.|+++.-+..+..++.+.... .+....+|.. .++ .+..+|.|+.+. +.
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl-~~l~~~d~~d~ivIAG--MG 95 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGL-AVLELEDEIDVIVIAG--MG 95 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCc-cccCccCCcCEEEEeC--Cc
Confidence 499999999999999984 25678888888777776555554432 2344444431 223 334789887554 11
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
-.-...+|.+-..-|+.==+|++ -|... -..+++.+...+|.++...-
T Consensus 96 -G~lI~~ILee~~~~l~~~~rlIL-QPn~~---------~~~LR~~L~~~~~~I~~E~i 143 (226)
T COG2384 96 -GTLIREILEEGKEKLKGVERLIL-QPNIH---------TYELREWLSANSYEIKAETI 143 (226)
T ss_pred -HHHHHHHHHHhhhhhcCcceEEE-CCCCC---------HHHHHHHHHhCCceeeeeee
Confidence 11224567777776664445555 23221 23678899999998886543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 514 | |||
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 5e-08 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 8e-08 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 9e-08 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 9e-08 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 2e-07 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 2e-07 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 5e-07 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 5e-07 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 7e-07 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 1e-06 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 1e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-06 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 1e-06 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 1e-06 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 3e-06 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 3e-06 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 3e-06 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 3e-06 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 5e-06 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 5e-06 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 7e-06 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 9e-06 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 9e-06 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 1e-05 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 1e-05 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 3e-05 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 3e-05 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 1e-04 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 2e-04 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 4e-04 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 4e-04 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 5e-04 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 5e-04 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 5e-04 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 6e-04 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 7e-04 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 8e-04 |
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 5e-08
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 20/129 (15%)
Query: 217 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVL--GTK 271
++D+GCG F + H ++ + D+ E + A G + +
Sbjct: 45 LRIVDLGCGFGWFCRWAHEHGASYVLGL-----DLSEKMLARARAAGPDTGITYERADLD 99
Query: 272 RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS---------SPEAYA 322
+L P SF+LA+ S + +++ L + + L PGG+FV+S + +A
Sbjct: 100 KLHLPQDSFDLAYSSLA-LHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWA 158
Query: 323 HDPENRRIW 331
D E RR W
Sbjct: 159 IDAEGRRTW 167
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 8e-08
Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 15/152 (9%)
Query: 192 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVH 249
+ +Y + + + G VLD+ CGV F L +++ + D+
Sbjct: 18 SQEYRSRIETLEPLLMKYMKKRGK---VLDLACGVGGFSFLLEDYGFEVVGV-----DIS 69
Query: 250 ENQIQFALERGIPSTLGVLGTK----RLPYPSRSFELAHCSRCRIDWLQRD-GILLLELD 304
E+ I+ A E V +L + ++F+ + + + + E+
Sbjct: 70 EDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVR 129
Query: 305 RLLRPGGYFVYSSPEAYAHDPENRRIWNAMYD 336
R+L+P G F+ + P +
Sbjct: 130 RVLKPSGKFIMYFTDLRELLPRLKESLVVGQK 161
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 9e-08
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 12/120 (10%)
Query: 218 NVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVHENQIQFALERGIPSTLG-VLG-TKRL 273
VLDVGCG L + + + D+ E IQ ERG L + G L
Sbjct: 56 EVLDVGCGDGYGTYKLSRTGYKAVGV-----DISEVMIQKGKERGEGPDLSFIKGDLSSL 110
Query: 274 PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS--SPEAYAHDPENRRIW 331
P+ + FE ++W + L E+ R+L+ GY + P A + R++
Sbjct: 111 PFENEQFEAIMAINS-LEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLY 169
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 9e-08
Identities = 23/157 (14%), Positives = 50/157 (31%), Gaps = 30/157 (19%)
Query: 198 ALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYL---LSHDIIAMSLAPNDVHENQIQ 254
A++ + + D + D+GCG +L + I + D+ + I+
Sbjct: 37 AVSFINELTDDA--------KIADIGCGTGGQTLFLADYVKGQITGI-----DLFPDFIE 83
Query: 255 FALERGIPSTLGVLGT------KRLPYPSRSFEL--AHCSRCRIDWLQRDGILLLELDRL 306
E + + LP+ + +L + + I + E +
Sbjct: 84 IFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIG----FERGMNEWSKY 139
Query: 307 LRPGGYFVYSSPEAYAHDP--ENRRIWNAMYDLLKSM 341
L+ GG+ S + + E W Y + +
Sbjct: 140 LKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVI 176
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 2e-07
Identities = 26/175 (14%), Positives = 52/175 (29%), Gaps = 34/175 (19%)
Query: 186 THFHDGADKY--------ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYL---L 234
F ++ + AL+ + + D+GCG L +
Sbjct: 17 CDFFSNMERQGPGSPEVTLKALSFIDNLTEKS--------LIADIGCGTGGQTMVLAGHV 68
Query: 235 SHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTK--RLPYPSRSFELAHCSRC 288
+ + + D I G+ + + + LP+ + +L S
Sbjct: 69 TGQVTGL-----DFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIW-SEG 122
Query: 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDP--ENRRIWNAMYDLLKSM 341
I + L E + L+ GGY S + + E W Y + ++
Sbjct: 123 AI-YNIGFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTI 176
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 2e-07
Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 11/105 (10%)
Query: 217 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPS--TLGVLGTK 271
+ VLD+GCG Y H ++ + D+ E + A + +
Sbjct: 46 KTVLDLGCGFGWHCIYAAEHGAKKVLGI-----DLSERMLTEAKRKTTSPVVCYEQKAIE 100
Query: 272 RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316
+ ++ + S + ++ + ++ L+ G F++S
Sbjct: 101 DIAIEPDAYNVVLSSLA-LHYIASFDDICKKVYINLKSSGSFIFS 144
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 5e-07
Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 10/121 (8%)
Query: 219 VLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP 276
+LDVG G + +L S H I + + ++ A + T L
Sbjct: 45 ILDVGSGTGRWTGHLASLGHQIEGL-----EPATRLVELARQTHPSVTFHHGTITDLSDS 99
Query: 277 SRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAM 334
+ + + + + L+ L + GG + S + +P + A
Sbjct: 100 PKRWAGLLAWYS-LIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAY 158
Query: 335 Y 335
Sbjct: 159 R 159
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 5e-07
Identities = 29/153 (18%), Positives = 47/153 (30%), Gaps = 27/153 (17%)
Query: 190 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPND 247
D + L L+R+L P + VL+ GCG A A D
Sbjct: 33 DPELTFDLWLSRLLT-PQTR---------VLEAGCGHGPDAARFGPQAARWAAY-----D 77
Query: 248 VHENQIQFALERGIPSTLGVLGTK-RLPYPSRS-FELAHCSRCRIDWLQRDGILLLELDR 305
++ A + + K LP + F L R + L
Sbjct: 78 FSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRRGPTSVIL-------RLPE 130
Query: 306 LLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLL 338
L P +F+Y P + R+ +D++
Sbjct: 131 LAAPDAHFLYVGPRLNVPEVP-ERLAAVGWDIV 162
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 7e-07
Identities = 21/157 (13%), Positives = 56/157 (35%), Gaps = 18/157 (11%)
Query: 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHE 250
K I+ ++ +F + + VLD G G + + + ++ +
Sbjct: 3 KTIIRQPQLYRFLKYCNESNLDKT-VLDCGAGGDLPPLSIFVEDGYKTYGI-----EISD 56
Query: 251 NQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI--LLLELD 304
Q++ A + ++LP+ S + I ++++ + + E+
Sbjct: 57 LQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGT-IFHMRKNDVKEAIDEIK 115
Query: 305 RLLRPGGYFVYS--SPEAYAHDPENRRIWNAMYDLLK 339
R+L+PGG + + + ++ + L +
Sbjct: 116 RVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLER 152
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 33/174 (18%), Positives = 61/174 (35%), Gaps = 27/174 (15%)
Query: 186 THFHDGADKYIL-ALARMLKFPSDKLNNGGNIR---NVLDVGCGVASFGAYLL----SHD 237
H + + L A L+ L++ VL+ GCG+ + L +
Sbjct: 7 VHGYSEREALRLSEQAETLE---KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAE 63
Query: 238 IIAMSLAPNDVHENQIQFALER----GIPSTLGVLGT-KRLPYPSRSFELAHCSRCRIDW 292
I ++ D+ ++ A E GI + + LP+ SF+ ++
Sbjct: 64 ITSI-----DISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV-LEH 117
Query: 293 LQRDGILLLELDRLLRPGGYFV-----YSSPEAYAHDPENRRIWNAMYDLLKSM 341
LQ L L ++L+PGG + S + + WN + + M
Sbjct: 118 LQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYM 171
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 34/185 (18%), Positives = 56/185 (30%), Gaps = 29/185 (15%)
Query: 167 SDQHWMVVNGEKINF-----PGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLD 221
+ + GE ++F G D D+ + +L S VLD
Sbjct: 16 FTDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGD--------RVLD 67
Query: 222 VGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLG-----VLGTKR- 272
VGCG+ L + + + + Q+ A R + L
Sbjct: 68 VGCGIGKPAVRLATARDVRVTGI-----SISRPQVNQANARATAAGLANRVTFSYADAMD 122
Query: 273 LPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP-EAYAHDPENRRIW 331
LP+ SF+ R L E+ R+LRPGG + + +
Sbjct: 123 LPFEDASFDAVWALESLHHMPDRGR-ALREMARVLRPGGTVAIADFVLLAPVEGAKKEAV 181
Query: 332 NAMYD 336
+A
Sbjct: 182 DAFRA 186
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 1e-06
Identities = 68/464 (14%), Positives = 124/464 (26%), Gaps = 145/464 (31%)
Query: 61 FGRNRDFDDLFEDQE---LNPEVPKSI---PICDMRYSELIPCLDR---NLIYQL---KL 108
F N D D+ +D L+ E I L L ++ + L
Sbjct: 29 FVDNFDCKDV-QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 109 KPNLS-LMEHYERHCPPP-----------ERRYNCLVPPPKGYKIPVRWPASRDEVWKAN 156
+ N LM + P +R YN K Y + R K
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVS-R----LQPYLKL- 140
Query: 157 IPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNI 216
L E + + ++++G G+ K +AL L + +
Sbjct: 141 --RQALLELRPAK-NVLIDGVL------------GSGKTWVALDVCLSYKVQCKMDFK-- 183
Query: 217 RNVLDVGCGV--ASFGAYLLSHDIIAM------SLAPNDVHENQIQFALERGIPSTLGVL 268
+ + ++ M + PN + ++ I S L
Sbjct: 184 ---------IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 269 GTKRL----PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD 324
+RL PY C LL L +
Sbjct: 235 --RRLLKSKPYE----------NC-----------LLVLL-------------------N 252
Query: 325 PENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDV 384
+N + WNA +L C +++ + + V + + ++ L PD
Sbjct: 253 VQNAKAWNAF-NL---SCKILLTTRFKQVTDFLSAATTTHISLDH-HSMTL-----TPDE 302
Query: 385 TWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRV 444
++L K + L P + PR + + E + + W
Sbjct: 303 VKSLL---------LKYLDCRPQDL---PREVLTTNPRR--LSIIAESIRDGLATW---- 344
Query: 445 VDYWKQMKTVAQKNTFR---NVMDMNSNLGGFAA-ALKDKDVWV 484
D WK + NV++ F ++ +
Sbjct: 345 -DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 9/113 (7%)
Query: 219 VLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP 276
+LD GCG G YL HD++ D+ I +A + + V
Sbjct: 50 ILDAGCGQGRIGGYLSKQGHDVLGT-----DLDPILIDYAKQDFPEARWVVGDLSVDQIS 104
Query: 277 SRSFELAHCSRCRIDWLQRDGIL--LLELDRLLRPGGYFVYSSPEAYAHDPEN 327
F+L + + +L DG L + R L G V +
Sbjct: 105 ETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGD 157
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 1e-06
Identities = 31/176 (17%), Positives = 60/176 (34%), Gaps = 30/176 (17%)
Query: 184 GGTHFHDG-------ADKYILALARMLKFPSDKLNNGGNIR---NVLDVGCGVASFGAYL 233
GG H G D+ A R ++ + +L G ++ LD+G G +L
Sbjct: 41 GGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFL 100
Query: 234 LSH---DIIAMSLAPNDVHENQIQFALERGIPSTLG-----VLGTKR-LPYPSRSFEL-- 282
+ I +++AP Q + E + L G+ +P S++
Sbjct: 101 VRKFGVSIDCLNIAP-----VQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIW 155
Query: 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP-EAYAHDPENRRIWNAMYDL 337
+ + + + E R+L+P G + P + D + + L
Sbjct: 156 SQDAFLHSPDKLK---VFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKL 208
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 3e-06
Identities = 38/235 (16%), Positives = 72/235 (30%), Gaps = 26/235 (11%)
Query: 134 PPPKGYKIPVRWPASRDEVWKANIPHTHLAE-----EKSDQHWMVVNGEKINFPGGGTHF 188
P G + S DE+WKA + K+ ++W V GG H
Sbjct: 15 LPISGRDTNGKTYRSTDEMWKAELTGDLYDPEKGWYGKALEYWRTVPATVSGVLGGMDHV 74
Query: 189 HDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDV 248
HD + L LD G G+ LL+ + + +
Sbjct: 75 HDVDIEGSRNFIASLPGHGTS--------RALDCGAGIGRITKNLLTK--LYATTDLLEP 124
Query: 249 HENQIQFALERGIPSTLG---VLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLL-ELD 304
++ ++ A +G + + P +++L I D +
Sbjct: 125 VKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQ 184
Query: 305 RLLRPGGYFV----YSSPEAYAHDPENRRIWNAMYDLLKSMC---WKIVSKKDQT 352
+ L P GY S+ + + D E+ + + + ++V + Q
Sbjct: 185 QALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQE 239
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 3e-06
Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 20/153 (13%)
Query: 187 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMS 242
F D A Y ++ ++L++ VLD+GCG + +
Sbjct: 60 AFLD-AGHYQPLRDAIVAQLRERLDDKA--TAVLDIGCGEGYYTHAFADALPEITTFGL- 115
Query: 243 LAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLE 302
DV + I+ A +R T V + RLP+ S + I E
Sbjct: 116 ----DVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIR----IYAPC----KAEE 163
Query: 303 LDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMY 335
L R+++PGG+ + ++P I+N ++
Sbjct: 164 LARVVKPGGWVITATPGPRHLMELKGLIYNEVH 196
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 3e-06
Identities = 21/159 (13%), Positives = 47/159 (29%), Gaps = 16/159 (10%)
Query: 181 FPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DI 238
+ G + I + ++ + LN + D+G G + L + +
Sbjct: 5 YNSIGKQYSQTRVPDIRIVNAII----NLLNLPKGSV-IADIGAGTGGYSVALANQGLFV 59
Query: 239 IAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 297
A+ + Q A+ + G L P +S + I
Sbjct: 60 YAV-----EPSIVMRQQAVVHPQVEWFTGYAE--NLALPDKSVDGVISILA-IHHFSHLE 111
Query: 298 ILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYD 336
E+ R++R G + + A + +++
Sbjct: 112 KSFQEMQRIIRDGTIVLLTFDIRLAQRIWLYDYFPFLWE 150
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 3e-06
Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 217 RNVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP 274
VLD+G G + +L +++ + D + ++ A E+G+ + + LP
Sbjct: 56 CRVLDLGGGTGKWSLFLQERGFEVVLV-----DPSKEMLEVAREKGVKNVVEAKAED-LP 109
Query: 275 YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS--SPEAYAHDPENRRIWN 332
+PS +FE + +++ E+ R+L P G + + + + + W+
Sbjct: 110 FPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWD 169
Query: 333 AMYDLLK 339
+ LK
Sbjct: 170 QITRFLK 176
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 17/142 (11%)
Query: 217 RNVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP 274
+ VLD+GC + GA + + + + + A E+ LG + T +P
Sbjct: 34 KEVLDIGCSSGALGAAIKENGTRVSGI-----EAFPEAAEQAKEKLDHVVLGDIETMDMP 88
Query: 275 YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAM 334
Y F+ ++ L ++ ++ ++ G + S P N + +
Sbjct: 89 YEEEQFDCVIFGDV-LEHLFDPWAVIEKVKPYIKQNGVILASIP--------NVSHISVL 139
Query: 335 YDLLKS-MCWKIVSKKDQTVIW 355
LL + D+T I
Sbjct: 140 APLLAGNWTYTEYGLLDKTHIR 161
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 5e-06
Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 17/200 (8%)
Query: 165 EKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGC 224
K+ +W + GG H D I + + L+ + N LD G
Sbjct: 32 SKAKTYWKQIPPTVDGMLGGYGHISS-ID--INSSRKFLQRFLREGPNKTGTSCALDCGA 88
Query: 225 GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVL-----GTKRLPYPSRS 279
G+ LL + + D+ E+ + A V G + S
Sbjct: 89 GIGRITKRLLLP--LFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDS 146
Query: 280 FELAHCSRCRIDWLQRDGILLL-ELDRLLRPGGYFVYS---SPEAYAHDPENRRI---WN 332
+++ + L LRP G V + E D + + +
Sbjct: 147 YDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLD 206
Query: 333 AMYDLLKSMCWKIVSKKDQT 352
+ ++ S +++++ Q
Sbjct: 207 VVRRIICSAGLSLLAEERQE 226
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 7e-06
Identities = 24/169 (14%), Positives = 51/169 (30%), Gaps = 32/169 (18%)
Query: 184 GGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIA 240
G + G + + ++ + VLD+G G+ Y+
Sbjct: 32 GENYISSGGLEATKKILSDIELNENS--------KVLDIGSGLGGGCMYINEKYGAHTHG 83
Query: 241 MSLAPNDVHENQIQFALERGIPS---TLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 297
+ D+ N + A ER + +P +F+L + D +
Sbjct: 84 I-----DICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYS----RDAILALS 134
Query: 298 I-----LLLELDRLLRPGGYFVYS----SPEAYAHDPENRRIWNAMYDL 337
+ L + + L+P G + + + + D + Y L
Sbjct: 135 LENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTL 183
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 9e-06
Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 6/122 (4%)
Query: 219 VLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP 276
+L + G +L S +++ A+ + + Q A E+G+ T
Sbjct: 33 ILCLAEGEGRNACFLASLGYEVTAVDQSSVGL-AKAKQLAQEKGVKITTVQSNLADFDIV 91
Query: 277 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS--SPEAYAHDPENRRIWNAM 334
+ ++E C + R L ++ + L+PGG F+ +PE ++ + + +
Sbjct: 92 ADAWEGIVSIFCHLPSSLRQQ-LYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLL 150
Query: 335 YD 336
Sbjct: 151 PK 152
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 9e-06
Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 10/126 (7%)
Query: 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPS 277
+++G G F L I + + E + A +RG+ G + LP
Sbjct: 50 RGVEIGVGTGRFAVPL--KIKIGV-----EPSERMAEIARKRGVFVLKGTA--ENLPLKD 100
Query: 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDL 337
SF+ A I ++ L E R+L+ GGY + + +
Sbjct: 101 ESFDFA-LMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVF 159
Query: 338 LKSMCW 343
K+ +
Sbjct: 160 YKNARF 165
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 219 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSR 278
+L+VG G + L + + + E + R +T + LP+P
Sbjct: 40 LLEVGAGTGYWLRRLPYPQKVGV-----EPSEAMLAVGRRRAPEATWVRAWGEALPFPGE 94
Query: 279 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV 314
SF++ +++++ +LLE R+LRPGG V
Sbjct: 95 SFDVVLLFTT-LEFVEDVERVLLEARRVLRPGGALV 129
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 14/118 (11%)
Query: 219 VLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP 276
++D GCG + YLL + + D++ ++ E+ S + + + P
Sbjct: 21 IVDYGCGNGFYCKYLLEFATKLYCI-----DINVIALKEVKEK-FDSVITL--SDPKEIP 72
Query: 277 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV---YSSPEAYAHDPENRRIW 331
S + + + ++ E+ R+L+ G + + P + R+
Sbjct: 73 DNSVDFILFANS-FHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMD 129
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 3e-05
Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 12/105 (11%)
Query: 217 RNVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVL---GTK 271
VLD+GCG L + + + D + A G +
Sbjct: 54 ERVLDLGCGEGWLLRALADRGIEAVGV-----DGDRTLVDAARAAGAGEVHLASYAQLAE 108
Query: 272 RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316
+ ++L C+ + LL + LL PGG V
Sbjct: 109 AKVPVGKDYDLI-CANFALLHQDIIE-LLSAMRTLLVPGGALVIQ 151
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 3e-05
Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 13/148 (8%)
Query: 188 FHDGADKY-------ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYL--LSHDI 238
A Y ++ + ++ G L++G G L +
Sbjct: 5 LLRAAYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRY 64
Query: 239 IAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLPYPSRSFELAHCSRCRIDWLQRDG 297
IA+ + + + A + V + +P P S +
Sbjct: 65 IALDADAAMLEVFRQKIA-GVDRKVQV-VQADARAIPLPDESVHGVIVVHL-WHLVPDWP 121
Query: 298 ILLLELDRLLRPGGYFVYSSPEAYAHDP 325
+L E R+L+PGG + +A A
Sbjct: 122 KVLAEAIRVLKPGGALLEGWDQAEASPE 149
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 1e-04
Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 15/122 (12%)
Query: 219 VLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPY 275
+L++GCG +L+ D+ A D A R G P
Sbjct: 47 ILELGCGAGYQAEAMLAAGFDVDAT-----DGSPELAAEASRRLGRP---VRTMLFHQLD 98
Query: 276 PSRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIWN 332
+++ C + + RD + +L + R L+PGG F S + R +N
Sbjct: 99 AIDAYDAVWAHAC-LLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYN 157
Query: 333 AM 334
Sbjct: 158 YP 159
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 12/122 (9%)
Query: 219 VLDVGCG--VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLPY 275
VLD+G G + + I + V FA E+G+ + GT + LP+
Sbjct: 25 VLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVAS-SFAQEKGVENVRFQQGTAESLPF 83
Query: 276 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV---YSSPEAYAHDPENRRIWN 332
P SF++ C R + E+ R+L+ G F+ + +PE DP N
Sbjct: 84 PDDSFDIITC-RYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPE----DPVLDEFVN 138
Query: 333 AM 334
+
Sbjct: 139 HL 140
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 4e-04
Identities = 18/140 (12%), Positives = 35/140 (25%), Gaps = 18/140 (12%)
Query: 213 GGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK- 271
G + ++DVGCG + + + +D+ I+ A S
Sbjct: 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSF 93
Query: 272 ------------RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV---YS 316
+ ++ C W + LR G Y+
Sbjct: 94 KISSSDDFKFLGADSVDKQKIDMITAVEC-AHWFDFE-KFQRSAYANLRKDGTIAIWGYA 151
Query: 317 SPEAYAHDPENRRIWNAMYD 336
P + + + Y
Sbjct: 152 DPIFPDYPEFDDLMIEVPYG 171
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 4e-04
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 10/111 (9%)
Query: 208 DKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTL 265
++L G +VL++ G + +L + A+ D I A G+ +
Sbjct: 39 ERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTAL-----DGSAEMIAEAGRHGLDNVE 93
Query: 266 GVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFV 314
P R ++ + + + D + + PGG
Sbjct: 94 FRQQDLFDWTPDRQWDAVFFAHW-LAHVPDDRFEAFWESVRSAVAPGGVVE 143
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 25/166 (15%), Positives = 46/166 (27%), Gaps = 26/166 (15%)
Query: 184 GGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIA 240
T F + + +D+G G + L I A
Sbjct: 21 SKTLFAPIYPIIAENIINRFGITAGT---------CIDIGSGPGALSIALAKQSDFSIRA 71
Query: 241 MSLAPNDVHENQIQFALERGIPSTLG-----VLGT-KRLPYPSRSFELAHCSRCRIDWLQ 294
+ D ++ + AL+ + L V G +P +L SR + + +
Sbjct: 72 L-----DFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLI-VSRGSVFFWE 125
Query: 295 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS 340
E+ R+L+ GG + + I M
Sbjct: 126 DVATAFREIYRILKSGGKTYIG--GGFGNKELRDSISAEMIRKNPD 169
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 5e-04
Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 22/141 (15%)
Query: 218 NVLDVGCGVASFGAYLL-----SHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVL 268
+++D GCG G L+ + D E + A E S
Sbjct: 25 HIVDYGCGYGYLGLVLMPLLPEGSKYTGI-----DSGETLLAEARELFRLLPYDSEFLEG 79
Query: 269 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV------YSSPEAYA 322
+ +++A C + + +L ++ ++ GG + S+ +Y
Sbjct: 80 DATEIELND-KYDIAIC-HAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYL 137
Query: 323 HDPENRRIWNAMYDLLKSMCW 343
D E + + + L K
Sbjct: 138 LDGEKQSEFIQLGVLQKLFES 158
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 5e-04
Identities = 29/142 (20%), Positives = 47/142 (33%), Gaps = 32/142 (22%)
Query: 219 VLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-- 270
VLD+GCG YL S +I + D+ +NQ++ A + G+
Sbjct: 87 VLDLGCG-TGRDVYLASKLVGEHGKVIGV-----DMLDNQLEVARKYVEYHAEKFFGSPS 140
Query: 271 -----------------KRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF 313
+ P S ++ C + L E+ R+LR GG
Sbjct: 141 RSNVRFLKGFIENLATAEPEGVPDSSVDIVIS-NCVCNLSTNKLALFKEIHRVLRDGGEL 199
Query: 314 VYSSPEAYAHDPENRRIWNAMY 335
+S A E + +Y
Sbjct: 200 YFSDVYADRRLSEAAQQDPILY 221
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 6e-04
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 15/106 (14%)
Query: 219 VLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTL------GVLGT 270
++D CG + +L +I + DV ++ ++ A + + + G++
Sbjct: 60 LIDFACGNGTQTKFLSQFFPRVIGL-----DVSKSALEIAAKENTAANISYRLLDGLVPE 114
Query: 271 KRLPYPSRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFV 314
+ S + R + + L L LL G
Sbjct: 115 QAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMY 160
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 7e-04
Identities = 19/154 (12%), Positives = 45/154 (29%), Gaps = 31/154 (20%)
Query: 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP 274
+LD+GCG + +++ D I+ A + V +
Sbjct: 59 EFILDLGCGTGQLTEKIAQSGAEVLGT-----DNAATMIEKARQNYPHLHFDVADARNFR 113
Query: 275 YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP---------------- 318
+ + + + W++ + + + L+ GG FV
Sbjct: 114 -VDKPLDAVFSNAM-LHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNAL 171
Query: 319 -EAYAHDPENRRIW-----NAMYDLLKSMCWKIV 346
H+P+ W ++L+ + +
Sbjct: 172 ETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVT 205
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 8e-04
Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 25/163 (15%)
Query: 186 THFHDGADKYILA--------LARMLKFPSDKLNNGGNIRNVLDVGCG--VASFGAYLLS 235
H Y+ + LA++++ + K VLDV G +
Sbjct: 5 KIHHHHHHMYVTSQIHAKGSDLAKLMQIAALK-----GNEEVLDVATGGGHVANAFAPFV 59
Query: 236 HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLPYPSRSFELAHCSRCRIDWLQ 294
++A L + + + F G V G +++P+ F + C R
Sbjct: 60 KKVVAFDLTEDILKVAR-AFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTC-RIAAHHFP 117
Query: 295 RDGILLLELDRLLRPGGYFV---YSSPEAYAHDPENRRIWNAM 334
+ E R+L+ GG + S+PE + +N +
Sbjct: 118 NPASFVSEAYRVLKKGGQLLLVDNSAPE----NDAFDVFYNYV 156
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 514 | |||
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.6 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.6 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.59 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.59 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.58 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.57 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.57 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.57 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.57 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.57 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.57 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.57 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.56 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.56 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.55 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.55 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.54 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.53 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.53 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.53 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.53 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.52 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.52 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.52 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.51 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.5 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.5 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.5 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.49 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.49 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.49 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.49 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.49 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.48 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.48 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.48 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.48 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.48 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.47 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.47 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.47 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.47 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.47 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.46 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.46 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.46 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.46 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.45 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.45 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.44 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.44 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.44 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.43 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.42 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.42 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.41 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.41 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.41 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.4 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.39 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.39 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.39 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.38 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.38 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.37 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.37 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.37 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.37 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.36 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.36 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.35 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.35 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.35 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.35 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.34 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.34 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.33 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.33 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.32 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.32 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.32 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.31 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.31 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.3 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.3 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.29 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.28 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.28 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.28 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.28 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.28 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.28 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.27 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.26 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.25 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.25 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.24 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.23 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.23 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.23 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.22 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.22 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.21 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.21 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.21 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.21 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.2 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.2 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.2 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.2 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.19 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.19 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.19 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.19 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.19 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.19 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.18 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.18 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.17 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.17 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.17 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.17 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.16 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.16 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.16 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.15 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.15 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.15 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.15 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.15 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.14 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.14 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.14 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.14 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.14 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.12 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.12 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.12 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.11 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.1 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.08 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.08 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.07 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.07 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.06 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.06 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.05 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.05 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.04 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.04 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.03 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.03 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.02 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.02 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.02 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.01 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.01 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.01 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.0 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.0 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.0 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.99 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.99 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.98 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.98 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.98 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.98 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.98 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.97 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.96 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.96 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.96 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.95 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.95 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.94 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.93 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.93 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.93 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.92 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.92 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.91 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.9 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.9 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.9 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.89 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.89 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.89 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.89 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.89 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.88 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.88 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.87 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.86 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.86 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.86 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.85 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.85 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.85 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.83 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.82 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.82 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.82 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.82 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.82 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.81 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.81 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.8 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.8 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.79 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.79 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.79 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.79 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.77 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.77 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.76 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.76 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.74 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.74 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.74 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.74 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.74 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.73 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.71 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.71 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.71 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.7 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.7 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.69 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.69 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.69 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.69 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.68 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.68 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.68 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.68 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.67 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.67 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.67 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.63 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.62 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.62 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.61 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.6 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.56 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.56 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.56 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.54 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.45 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.39 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.33 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.31 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.29 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.24 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.19 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.17 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.15 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.1 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.09 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.07 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.07 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.05 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.01 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.01 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.92 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.92 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 97.9 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.87 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 97.86 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.86 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.77 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.69 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.66 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.66 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.62 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.6 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.57 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.53 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.53 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.49 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.44 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.37 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.33 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.33 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.32 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.29 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.23 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.13 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 96.91 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.9 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 96.73 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.51 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.34 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 96.26 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 95.84 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.29 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 95.23 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.73 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 94.43 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.38 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 93.94 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 93.94 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 91.79 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 90.06 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 89.08 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 88.74 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 88.47 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 87.57 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 87.09 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 84.87 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 84.14 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 82.99 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 82.63 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 82.5 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 81.81 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 81.54 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 81.43 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 80.96 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 80.92 | |
| 2km1_A | 136 | Protein DRE2; yeast, antiapoptotic, protein bindin | 80.83 |
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.60 E-value=7.3e-15 Score=143.84 Aligned_cols=133 Identities=14% Similarity=0.221 Sum_probs=100.3
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
..+|||||||+|.++..|+.. .|+++|+++.++..+. +.+.+.+ .++.+.++|...+|+++++||+|+|.. +++|
T Consensus 38 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~-~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~-~l~~ 115 (260)
T 1vl5_A 38 NEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVAR-AFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRI-AAHH 115 (260)
T ss_dssp CCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEES-CGGG
T ss_pred CCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHH-HHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhh-hhHh
Confidence 468999999999999999853 6778877776665554 2333334 458899999999999999999999888 6888
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHH-----------------HhHHHHHHHHHhcCcEEEEEecc
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR-----------------RIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~-----------------~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
.+++..+|.++.|+|||||+|+++++..... .... ....++.++++++||+++.....
T Consensus 116 ~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 116 FPNPASFVSEAYRVLKKGGQLLLVDNSAPEN-DAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEEEBCSS-HHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEEE
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEEEcCCCCC-HHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 9999999999999999999999975422111 1000 01247789999999998776554
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-14 Score=143.43 Aligned_cols=134 Identities=22% Similarity=0.294 Sum_probs=100.7
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||||||+|.++..++. ..|+++|+++..+..+. +.+...+. ++.+..+|...+|+++++||+|++.. ++
T Consensus 62 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l 139 (273)
T 3bus_A 62 GDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQAN-ARATAAGLANRVTFSYADAMDLPFEDASFDAVWALE-SL 139 (273)
T ss_dssp TCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEES-CT
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHhcCCCcceEEEECccccCCCCCCCccEEEEec-hh
Confidence 46899999999999999874 46778877776665444 22333343 48889999999999989999999887 68
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhH----HH------------hHHHHHHHHHhcCcEEEEEecc
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN----RR------------IWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~----~~------------~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
+|+++...+|+++.++|||||+++++++......... .. ...++.++++++||+++..+..
T Consensus 140 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 216 (273)
T 3bus_A 140 HHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDI 216 (273)
T ss_dssp TTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEEEC
T ss_pred hhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEEEC
Confidence 8899999999999999999999999875322111110 00 1157889999999998866543
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.4e-15 Score=142.74 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=97.7
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
.+|||||||+|.++..++.. .|+++|++ +.+++.|+++.. ++.+..+|...+ +++++||+|+|.. +++|+
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s-----~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~-~l~~~ 116 (250)
T 2p7i_A 44 GNLLELGSFKGDFTSRLQEHFNDITCVEAS-----EEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTH-VLEHI 116 (250)
T ss_dssp SCEEEESCTTSHHHHHHTTTCSCEEEEESC-----HHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEES-CGGGC
T ss_pred CcEEEECCCCCHHHHHHHHhCCcEEEEeCC-----HHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhh-HHHhh
Confidence 47999999999999999864 45666554 555566666644 688888888877 4678999999888 69999
Q ss_pred cchHHHHHHHH-hhCCCCeEEEEEeCCCCCC-----------------ChhH-H------HhHHHHHHHHHhcCcEEEEE
Q 010274 294 QRDGILLLELD-RLLRPGGYFVYSSPEAYAH-----------------DPEN-R------RIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 294 ~d~~~lL~el~-RvLrPGG~lvis~P~~~~~-----------------~~e~-~------~~~~~l~~ll~~~Gf~~v~~ 348 (514)
+++..+|+++. |+|||||++++++|..... .... . ...+++.++++++||+++..
T Consensus 117 ~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 196 (250)
T 2p7i_A 117 DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYR 196 (250)
T ss_dssp SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred cCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEE
Confidence 99999999999 9999999999998754210 0000 0 02258899999999999877
Q ss_pred ec
Q 010274 349 KD 350 (514)
Q Consensus 349 ~~ 350 (514)
..
T Consensus 197 ~~ 198 (250)
T 2p7i_A 197 SG 198 (250)
T ss_dssp EE
T ss_pred ee
Confidence 64
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=138.75 Aligned_cols=133 Identities=16% Similarity=0.235 Sum_probs=100.5
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
..+|||||||+|.++..|+.. .++++|+ ++.+++.++++.. ++.+..+|...++++ ++||+|+|.. +++|
T Consensus 46 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~-----s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~-~l~~ 118 (220)
T 3hnr_A 46 FGNVLEFGVGTGNLTNKLLLAGRTVYGIEP-----SREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTY-AFHH 118 (220)
T ss_dssp CSEEEEECCTTSHHHHHHHHTTCEEEEECS-----CHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEES-CGGG
T ss_pred CCeEEEeCCCCCHHHHHHHhCCCeEEEEeC-----CHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECc-chhc
Confidence 358999999999999999864 4555555 4555566666654 678899999999888 8999999887 6888
Q ss_pred ccchHH--HHHHHHhhCCCCeEEEEEeCCCCCCCh-----------------hHHH-----hHHHHHHHHHhcCcEEEEE
Q 010274 293 LQRDGI--LLLELDRLLRPGGYFVYSSPEAYAHDP-----------------ENRR-----IWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 293 ~~d~~~--lL~el~RvLrPGG~lvis~P~~~~~~~-----------------e~~~-----~~~~l~~ll~~~Gf~~v~~ 348 (514)
++++.. +|+++.++|||||.++++++....... .... ..+++.++++++||+++..
T Consensus 119 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~ 198 (220)
T 3hnr_A 119 LTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFT 198 (220)
T ss_dssp SCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEE
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEe
Confidence 888876 999999999999999998764321100 0000 1257889999999998877
Q ss_pred ecceEEE
Q 010274 349 KDQTVIW 355 (514)
Q Consensus 349 ~~~~~iw 355 (514)
......|
T Consensus 199 ~~~~~~w 205 (220)
T 3hnr_A 199 RLNHFVW 205 (220)
T ss_dssp ECSSSEE
T ss_pred eccceEE
Confidence 6654444
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-15 Score=146.71 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=96.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC---CCeEEEeecCCCCCCCCCCceEEEeccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg---~~~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
...+|||||||+|.++..|+.. .++++|+++.++ +.++++. .++.+..+|...+++++++||+|+|..
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-----~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~- 166 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHML-----EEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQW- 166 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHH-----HHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEES-
T ss_pred CCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHH-----HHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcc-
Confidence 3468999999999999988753 366776665544 5555543 357888889888998889999999988
Q ss_pred ccccc--cchHHHHHHHHhhCCCCeEEEEEeCCCCCC-------ChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 289 RIDWL--QRDGILLLELDRLLRPGGYFVYSSPEAYAH-------DPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 289 ~l~~~--~d~~~lL~el~RvLrPGG~lvis~P~~~~~-------~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
+++|+ .+...+|+++.++|||||+++++++..... .......-+++.++++++||+++.....
T Consensus 167 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 238 (254)
T 1xtp_A 167 TAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQ 238 (254)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeec
Confidence 58888 446789999999999999999987521100 0000112367889999999998876543
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=141.63 Aligned_cols=147 Identities=14% Similarity=0.108 Sum_probs=107.2
Q ss_pred ccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC--CeE
Q 010274 190 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI--PST 264 (514)
Q Consensus 190 ~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~--~~~ 264 (514)
.......+.+.+.+.. ....+|||||||+|.++..++. ..|+++|+++.++..+. +.+...+. ++.
T Consensus 19 ~~~~~~~~~l~~~~~~--------~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~-~~~~~~~~~~~v~ 89 (256)
T 1nkv_A 19 PFTEEKYATLGRVLRM--------KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAK-RRAEELGVSERVH 89 (256)
T ss_dssp SCCHHHHHHHHHHTCC--------CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEE
T ss_pred CCCHHHHHHHHHhcCC--------CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHH-HHHHhcCCCcceE
Confidence 3445556666666543 2336899999999999998884 36788888887776555 33344453 588
Q ss_pred EEeecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCC--ChhHH-----------HhH
Q 010274 265 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH--DPENR-----------RIW 331 (514)
Q Consensus 265 ~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~--~~e~~-----------~~~ 331 (514)
+..+|+..+++ +++||+|+|.. +++|.++...+|+++.|+|||||+++++++..... ..... ...
T Consensus 90 ~~~~d~~~~~~-~~~fD~V~~~~-~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (256)
T 1nkv_A 90 FIHNDAAGYVA-NEKCDVAACVG-ATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTL 167 (256)
T ss_dssp EEESCCTTCCC-SSCEEEEEEES-CGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCH
T ss_pred EEECChHhCCc-CCCCCEEEECC-ChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCH
Confidence 99999998888 78999999877 68888899999999999999999999987532111 11111 122
Q ss_pred HHHHHHHHhcCcEEEE
Q 010274 332 NAMYDLLKSMCWKIVS 347 (514)
Q Consensus 332 ~~l~~ll~~~Gf~~v~ 347 (514)
.++.++++++||+.+.
T Consensus 168 ~~~~~~l~~aGf~~~~ 183 (256)
T 1nkv_A 168 PGLVGAFDDLGYDVVE 183 (256)
T ss_dssp HHHHHHHHTTTBCCCE
T ss_pred HHHHHHHHHCCCeeEE
Confidence 5788999999997664
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-14 Score=140.16 Aligned_cols=133 Identities=18% Similarity=0.221 Sum_probs=101.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
...+|||||||+|.++..++.. .|+++|+++..+..+.. .+...+. ++.+..+|...+++++++||+|+|.. +
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~-~ 123 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNR-NARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG-A 123 (267)
T ss_dssp TTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS-C
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHH-HHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC-C
Confidence 3468999999999999999863 67888887776655553 3333443 48899999999999889999999888 5
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCCCC--CCChhHHHhH----------HHHHHHHHhcCcEEEEEec
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAY--AHDPENRRIW----------NAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~--~~~~e~~~~~----------~~l~~ll~~~Gf~~v~~~~ 350 (514)
++++ ++..+++++.++|||||+++++++... .........| .++.++++++||+++....
T Consensus 124 ~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 195 (267)
T 3kkz_A 124 IYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFI 195 (267)
T ss_dssp GGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEEE
T ss_pred ceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 7777 788899999999999999999875321 1222222233 4788999999999886543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=144.09 Aligned_cols=134 Identities=16% Similarity=0.198 Sum_probs=101.4
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||||||+|.++..|+. ..++++|+++.++..+... +...+. ++.+..+|...+|+++++||+|++.. ++
T Consensus 83 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l 160 (297)
T 2o57_A 83 QAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEY-NNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD-AF 160 (297)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES-CG
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHH-HHhcCCCcceEEEEcCcccCCCCCCCEeEEEecc-hh
Confidence 46899999999999999885 3677888777666555432 233343 58899999999999999999999888 68
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCC-Chh-HHH-----------hHHHHHHHHHhcCcEEEEEecc
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH-DPE-NRR-----------IWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~-~~e-~~~-----------~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
+|++++..+|+++.|+|||||+++++++..... ... ... ...++.++++++||+++.....
T Consensus 161 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 161 LHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred hhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEEEC
Confidence 888999999999999999999999987532111 111 011 1246788999999998876553
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.5e-14 Score=134.92 Aligned_cols=134 Identities=16% Similarity=0.133 Sum_probs=103.2
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||||||+|.++..++. ..++++|+++..+..+..........++.+..+|...+++++++||+|+++. ++
T Consensus 38 ~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l 116 (219)
T 3dh0_A 38 GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAF-TF 116 (219)
T ss_dssp TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEES-CG
T ss_pred CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeeh-hh
Confidence 35899999999999998873 3678888888777666544433332468899999999999889999999888 68
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCC----ChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH----DPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~----~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+|.++...+++++.++|||||+++++++..... ........+++.++++++||+++....
T Consensus 117 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 180 (219)
T 3dh0_A 117 HELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVE 180 (219)
T ss_dssp GGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEe
Confidence 888999999999999999999999987432111 111111236788999999999887654
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=141.39 Aligned_cols=131 Identities=21% Similarity=0.263 Sum_probs=99.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC---CCeEEEeecCCCCCCCCCCceEEEeccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg---~~~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
...+|||||||+|.++..++.. .|+++|+ ++.+++.|+++. .++.+...|...+++++++||+|++..
T Consensus 55 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~-----s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~- 128 (266)
T 3ujc_A 55 ENSKVLDIGSGLGGGCMYINEKYGAHTHGIDI-----CSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRD- 128 (266)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEES-----CHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEES-
T ss_pred CCCEEEEECCCCCHHHHHHHHHcCCEEEEEeC-----CHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHH-
Confidence 3468999999999999998853 4566655 555566776664 568889999999999899999999887
Q ss_pred ccccc--cchHHHHHHHHhhCCCCeEEEEEeCCCCC---CChhHHH----------hHHHHHHHHHhcCcEEEEEecc
Q 010274 289 RIDWL--QRDGILLLELDRLLRPGGYFVYSSPEAYA---HDPENRR----------IWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 289 ~l~~~--~d~~~lL~el~RvLrPGG~lvis~P~~~~---~~~e~~~----------~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
+++|+ .+...+++++.++|||||++++.++.... ....... ..+++.++++++||+++..+..
T Consensus 129 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 206 (266)
T 3ujc_A 129 AILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKDL 206 (266)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEEeC
Confidence 68888 78889999999999999999998753211 1111100 1257889999999998876543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.57 E-value=9e-15 Score=137.55 Aligned_cols=129 Identities=15% Similarity=0.107 Sum_probs=100.7
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
.+|||||||+|.++..|+.. .++++| +++.+++.++++..++.+..+|...+++++++||+|++.. +++|++
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD-----~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~~~ 116 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASLGHQIEGLE-----PATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWY-SLIHMG 116 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHTTCCEEEEC-----CCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEES-SSTTCC
T ss_pred CeEEEecCCCCHHHHHHHhcCCeEEEEe-----CCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehh-hHhcCC
Confidence 47999999999999999864 455665 4555667777777788999999999998889999999988 577775
Q ss_pred --chHHHHHHHHhhCCCCeEEEEEeCCCCCCC-------hhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 295 --RDGILLLELDRLLRPGGYFVYSSPEAYAHD-------PENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 295 --d~~~lL~el~RvLrPGG~lvis~P~~~~~~-------~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
+...+|+++.++|||||+++++.+...... .......+++.++++++||+++.....
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 182 (203)
T 3h2b_A 117 PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWD 182 (203)
T ss_dssp TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEec
Confidence 778899999999999999999875432100 000012367889999999999987654
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.1e-14 Score=138.62 Aligned_cols=130 Identities=16% Similarity=0.269 Sum_probs=100.1
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCC--eEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~--~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||||||+|.++..++. ..|+++|+++..+..+. +.+...+.. +.+..+|...+++++++||+|+|.. ++
T Consensus 47 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l 124 (257)
T 3f4k_A 47 DAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFN-ENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG-AI 124 (257)
T ss_dssp TCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES-CS
T ss_pred CCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHH-HHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC-hH
Confidence 45899999999999999985 26888888887766555 333444443 8899999999999889999999888 57
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCCC--CChhHHHhH----------HHHHHHHHhcCcEEEEE
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYA--HDPENRRIW----------NAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~--~~~e~~~~~----------~~l~~ll~~~Gf~~v~~ 348 (514)
+|+ +...+++++.++|||||+++++++.... ........| .++.++++++||+++..
T Consensus 125 ~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (257)
T 3f4k_A 125 YNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAH 193 (257)
T ss_dssp CCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEE
T ss_pred hhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEE
Confidence 777 7888999999999999999998753211 112222223 47889999999998874
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-15 Score=149.24 Aligned_cols=96 Identities=26% Similarity=0.370 Sum_probs=78.8
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
.+|||||||+|.++..|++. +|+|+|++ +.|++.|++ ..++.+.+++++.+|+++++||+|+|+. ++||.
T Consensus 41 ~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s-----~~ml~~a~~-~~~v~~~~~~~e~~~~~~~sfD~v~~~~-~~h~~- 112 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGLAEFFERVHAVDPG-----EAQIRQALR-HPRVTYAVAPAEDTGLPPASVDVAIAAQ-AMHWF- 112 (257)
T ss_dssp SEEEEESCTTTTTHHHHHTTCSEEEEEESC-----HHHHHTCCC-CTTEEEEECCTTCCCCCSSCEEEEEECS-CCTTC-
T ss_pred CCEEEEcCCCCHHHHHHHHhCCEEEEEeCc-----HHhhhhhhh-cCCceeehhhhhhhcccCCcccEEEEee-ehhHh-
Confidence 57999999999999999864 56666554 555555543 4578999999999999999999999988 57877
Q ss_pred chHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 295 RDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 295 d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
++..++.++.|+|||||.|++.....
T Consensus 113 ~~~~~~~e~~rvLkpgG~l~~~~~~~ 138 (257)
T 4hg2_A 113 DLDRFWAELRRVARPGAVFAAVTYGL 138 (257)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred hHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 46789999999999999999876443
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=136.52 Aligned_cols=130 Identities=12% Similarity=0.116 Sum_probs=98.8
Q ss_pred eEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 218 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
+|||||||+|.++..++.. .++++|+++..+..+... +...+. ++.+..+|...+++++++||+|++.. +++|
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-~l~~ 123 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKN-IADANLNDRIQIVQGDVHNIPIEDNYADLIVSRG-SVFF 123 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEES-CGGG
T ss_pred EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHhccccCceEEEEcCHHHCCCCcccccEEEECc-hHhh
Confidence 8999999999999999853 677888777666555533 233333 58899999999999999999999888 6888
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChh-------------------HHH--hHHHHHHHHHhcCcEEEEEe
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE-------------------NRR--IWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e-------------------~~~--~~~~l~~ll~~~Gf~~v~~~ 349 (514)
.++...+++++.++|||||+++++++........ ... .-+++.++++++||+.+...
T Consensus 124 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 201 (219)
T 3dlc_A 124 WEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEII 201 (219)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEE
T ss_pred ccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEE
Confidence 8999999999999999999999986432110000 000 12578899999999877654
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=139.12 Aligned_cols=128 Identities=25% Similarity=0.310 Sum_probs=98.9
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHc--CCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~r--g~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
.+|||||||+|.++..++.. .++++| +++.+++.++++ ..++.+..+|...+++++++||+|+|.. +++|
T Consensus 55 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD-----~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~ 128 (242)
T 3l8d_A 55 AEVLDVGCGDGYGTYKLSRTGYKAVGVD-----ISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAIN-SLEW 128 (242)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEE-----SCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEES-CTTS
T ss_pred CeEEEEcCCCCHHHHHHHHcCCeEEEEE-----CCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcC-hHhh
Confidence 58999999999999999864 455555 455556666665 4568899999999999889999999887 6888
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhH--H-----------HhHHHHHHHHHhcCcEEEEEec
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN--R-----------RIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~--~-----------~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
.+++..+++++.++|||||+++++++......... . ..-.++.++++++||+++....
T Consensus 129 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 129 TEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIG 199 (242)
T ss_dssp SSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEeec
Confidence 99999999999999999999999875322111000 0 0124788999999999987554
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.7e-14 Score=136.82 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=101.3
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
..+|||||||+|.++..++. ..++++|+++.++..+.... ...+ .++.+..+|...+++++++||+|+|.. +++|
T Consensus 22 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~-~l~~ 99 (239)
T 1xxl_A 22 EHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFA-QEKGVENVRFQQGTAESLPFPDDSFDIITCRY-AAHH 99 (239)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHH-HHHTCCSEEEEECBTTBCCSCTTCEEEEEEES-CGGG
T ss_pred CCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHH-HHcCCCCeEEEecccccCCCCCCcEEEEEECC-chhh
Confidence 46899999999999999985 36788888877765555333 3334 468889999999999989999999888 5888
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHH-----------------HhHHHHHHHHHhcCcEEEEEecc
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR-----------------RIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~-----------------~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
..++..++.++.++|||||++++.++..... .... ....++.++++++||+++.....
T Consensus 100 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 100 FSDVRKAVREVARVLKQDGRFLLVDHYAPED-PVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKW 174 (239)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEECBCSS-HHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccCHHHHHHHHHHHcCCCcEEEEEEcCCCCC-hhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEEEEee
Confidence 8899999999999999999999976432111 1000 01247888999999998765543
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-14 Score=141.24 Aligned_cols=126 Identities=18% Similarity=0.230 Sum_probs=94.5
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCC--CCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL--PYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~l--p~~~~sFDlV~~s~~~l~ 291 (514)
..+|||||||+|.++..+++. .|+++|+ ++.+++.++++ +.+...|.... ++++++||+|+|.. +++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~-----s~~~~~~a~~~---~~~~~~d~~~~~~~~~~~~fD~i~~~~-~l~ 112 (240)
T 3dli_A 42 CRRVLDIGCGRGEFLELCKEEGIESIGVDI-----NEDMIKFCEGK---FNVVKSDAIEYLKSLPDKYLDGVMISH-FVE 112 (240)
T ss_dssp CSCEEEETCTTTHHHHHHHHHTCCEEEECS-----CHHHHHHHHTT---SEEECSCHHHHHHTSCTTCBSEEEEES-CGG
T ss_pred CCeEEEEeCCCCHHHHHHHhCCCcEEEEEC-----CHHHHHHHHhh---cceeeccHHHHhhhcCCCCeeEEEECC-chh
Confidence 468999999999999998853 5566655 55556677665 67777776664 78889999999888 688
Q ss_pred cccch--HHHHHHHHhhCCCCeEEEEEeCCCCCCCh--------hH--HHhHHHHHHHHHhcCcEEEEEec
Q 010274 292 WLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDP--------EN--RRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 292 ~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~~~~--------e~--~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
|++++ ..+++++.++|||||++++.++....... .. ...-+++.++++++||+++....
T Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 183 (240)
T 3dli_A 113 HLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEF 183 (240)
T ss_dssp GSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred hCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEE
Confidence 88855 88999999999999999998875421100 00 00125788999999999876554
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-14 Score=140.76 Aligned_cols=131 Identities=17% Similarity=0.262 Sum_probs=100.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
...+|||||||+|.++..++.. .|+++|++ +.+++.|+++. .++.+..+|+..+++++++||+|+|.. +
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s-----~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~ 117 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLS-----ERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSL-A 117 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESC-----HHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEES-C
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECC-----HHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEch-h
Confidence 3468999999999999999864 45666555 45556666553 568899999999999889999999988 6
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCCCCC---------CChh------------------------H----HHhHH
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA---------HDPE------------------------N----RRIWN 332 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~---------~~~e------------------------~----~~~~~ 332 (514)
++|+.+...+|+++.++|||||+++++.+.... .... . ....+
T Consensus 118 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 197 (253)
T 3g5l_A 118 LHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVT 197 (253)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHH
T ss_pred hhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHH
Confidence 888999999999999999999999998543110 0000 0 00346
Q ss_pred HHHHHHHhcCcEEEEEecc
Q 010274 333 AMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 333 ~l~~ll~~~Gf~~v~~~~~ 351 (514)
++.++++++||+++.....
T Consensus 198 ~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 198 TYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp HHHHHHHHTTEEEEEEECC
T ss_pred HHHHHHHHcCCeeeeeecC
Confidence 7889999999999876654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-14 Score=139.80 Aligned_cols=136 Identities=16% Similarity=0.188 Sum_probs=97.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
+..+|||||||+|.++..|+.. .++++|+++.++..+..........++.+...|...+++++++||+|++.. +++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW-VIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEES-CGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcc-hhh
Confidence 3568999999999999998854 466776665555433322111112346788888888888888999999888 688
Q ss_pred cccchH--HHHHHHHhhCCCCeEEEEEeCCCCC-----C-ChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 292 WLQRDG--ILLLELDRLLRPGGYFVYSSPEAYA-----H-DPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 292 ~~~d~~--~lL~el~RvLrPGG~lvis~P~~~~-----~-~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
|++++. .+++++.++|||||+++++++.... . ........+++.++++++||+++..+..
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 225 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ 225 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeec
Confidence 887754 8999999999999999997753211 0 0000113468889999999999877654
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.8e-14 Score=134.58 Aligned_cols=130 Identities=19% Similarity=0.280 Sum_probs=97.4
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHc----CC------CeEEEeecCCCCCCCCCCceEE
Q 010274 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----GI------PSTLGVLGTKRLPYPSRSFELA 283 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~r----g~------~~~~~~~d~~~lp~~~~sFDlV 283 (514)
..+|||||||+|.++..++.. .++++|+++. +++.++++ +. ++.+...|...+++++++||+|
T Consensus 31 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 31 DDEILDIGCGSGKISLELASKGYSVTGIDINSE-----AIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCeEEEECCCCCHHHHHHHhCCCeEEEEECCHH-----HHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 358999999999999999864 5566666554 44555443 22 3678888999999888999999
Q ss_pred EecccccccccchH---HHHHHHHhhCCCCeEEEEEeCCCCCCChhH--------------------------------H
Q 010274 284 HCSRCRIDWLQRDG---ILLLELDRLLRPGGYFVYSSPEAYAHDPEN--------------------------------R 328 (514)
Q Consensus 284 ~~s~~~l~~~~d~~---~lL~el~RvLrPGG~lvis~P~~~~~~~e~--------------------------------~ 328 (514)
+++. ++++++++. .+++++.++|||||+++++++......... .
T Consensus 106 ~~~~-~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (235)
T 3sm3_A 106 VMQA-FLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHH 184 (235)
T ss_dssp EEES-CGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEEC
T ss_pred EEcc-hhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEe
Confidence 9887 688888876 899999999999999999875321111100 0
Q ss_pred HhHHHHHHHHHhcCcEEEEEecc
Q 010274 329 RIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 329 ~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
...+++.++++++||+++.....
T Consensus 185 ~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 185 FTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp BCHHHHHHHHHTTTEEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCEEEEEEec
Confidence 12357899999999999987654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.9e-14 Score=138.95 Aligned_cols=135 Identities=19% Similarity=0.350 Sum_probs=102.7
Q ss_pred CCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
...+|||||||+|.++..++. ..++++|+++..+..+.... ...+ .++.+...|...+++++++||+|+++. +
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~ 114 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENT-EKNGIKNVKFLQANIFSLPFEDSSFDHIFVCF-V 114 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHH-HHTTCCSEEEEECCGGGCCSCTTCEEEEEEES-C
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEcccccCCCCCCCeeEEEEec-h
Confidence 346899999999999999874 35788888777665555333 3334 368889999999999889999999888 6
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCCCCC-----CChhHHHhH-----------------HHHHHHHHhcCcEEEE
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-----HDPENRRIW-----------------NAMYDLLKSMCWKIVS 347 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~-----~~~e~~~~~-----------------~~l~~ll~~~Gf~~v~ 347 (514)
++|++++..++.++.++|||||++++.++.... ........| +++..+++++||+++.
T Consensus 115 l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v~ 194 (276)
T 3mgg_A 115 LEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIR 194 (276)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEEE
T ss_pred hhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCeEE
Confidence 889999999999999999999999998753211 111111111 3677899999999987
Q ss_pred Eecc
Q 010274 348 KKDQ 351 (514)
Q Consensus 348 ~~~~ 351 (514)
.+..
T Consensus 195 ~~~~ 198 (276)
T 3mgg_A 195 VEPR 198 (276)
T ss_dssp EEEE
T ss_pred EeeE
Confidence 7654
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.4e-14 Score=132.39 Aligned_cols=127 Identities=13% Similarity=0.183 Sum_probs=94.8
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
.+|||||||+|.++..++.. .++++|++ +.+++.+++.+ .++.+..+|...+ +++++||+|+|+. +++|.
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s-----~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~-~l~~~ 120 (218)
T 3ou2_A 48 GDVLELASGTGYWTRHLSGLADRVTALDGS-----AEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAH-WLAHV 120 (218)
T ss_dssp SEEEEESCTTSHHHHHHHHHSSEEEEEESC-----HHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEES-CGGGS
T ss_pred CeEEEECCCCCHHHHHHHhcCCeEEEEeCC-----HHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEec-hhhcC
Confidence 58999999999999999853 45666554 55556666666 5788899998887 7788999999988 68888
Q ss_pred cch--HHHHHHHHhhCCCCeEEEEEeCCCCCCC-hh----------------H--------HHhHHHHHHHHHhcCcEEE
Q 010274 294 QRD--GILLLELDRLLRPGGYFVYSSPEAYAHD-PE----------------N--------RRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 294 ~d~--~~lL~el~RvLrPGG~lvis~P~~~~~~-~e----------------~--------~~~~~~l~~ll~~~Gf~~v 346 (514)
+++ ..+|+++.++|||||.++++++...... .. . ...-+++.++++++||++.
T Consensus 121 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~ 200 (218)
T 3ou2_A 121 PDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCS 200 (218)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEE
Confidence 876 7899999999999999999875321000 00 0 0022578899999999966
Q ss_pred EEec
Q 010274 347 SKKD 350 (514)
Q Consensus 347 ~~~~ 350 (514)
..+.
T Consensus 201 ~~~~ 204 (218)
T 3ou2_A 201 VDEV 204 (218)
T ss_dssp EEEE
T ss_pred eeec
Confidence 5443
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.52 E-value=7.5e-14 Score=139.13 Aligned_cols=102 Identities=14% Similarity=0.250 Sum_probs=83.2
Q ss_pred CCCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
+..+|||||||+|.++..+++ ..|+++|+++..+..+. +.+...+.++.+.+.|+..++++ ++||+|++.. +
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~-~ 98 (284)
T 3gu3_A 22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAR-ELFRLLPYDSEFLEGDATEIELN-DKYDIAICHA-F 98 (284)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHH-HHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEES-C
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHhcCCceEEEEcchhhcCcC-CCeeEEEECC-h
Confidence 346899999999999999985 35777877776665444 22233345788999999998885 6999999888 6
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
+++.++...+++++.++|||||++++..|.
T Consensus 99 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 99 LLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp GGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 889999999999999999999999999886
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-14 Score=140.90 Aligned_cols=134 Identities=19% Similarity=0.260 Sum_probs=99.6
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCCC-CCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLP-YPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~lp-~~~~sFDlV~~s~~~l 290 (514)
..+|||||||+|.++..++.. .|+++|+++.++..+.. .+...+ .++.+..+|...++ +.+++||+|+|.. ++
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~-~l 146 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQ-AAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHA-VL 146 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEES-CG
T ss_pred CCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHH-HHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECc-hh
Confidence 468999999999999999854 57777777666554442 222234 35788899988887 7789999999888 68
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCCC--------C----------C-------hhHHHhHHHHHHHHHhcCcEE
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYA--------H----------D-------PENRRIWNAMYDLLKSMCWKI 345 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~--------~----------~-------~e~~~~~~~l~~ll~~~Gf~~ 345 (514)
+|++++..+++++.++|||||++++..+.... . . ......-+++..+++++||++
T Consensus 147 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~v 226 (285)
T 4htf_A 147 EWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGWQI 226 (285)
T ss_dssp GGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTCEE
T ss_pred hcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCCce
Confidence 89999999999999999999999998753110 0 0 000001257899999999999
Q ss_pred EEEecc
Q 010274 346 VSKKDQ 351 (514)
Q Consensus 346 v~~~~~ 351 (514)
+..+..
T Consensus 227 ~~~~~~ 232 (285)
T 4htf_A 227 MGKTGV 232 (285)
T ss_dssp EEEEEE
T ss_pred eeeeeE
Confidence 877654
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5e-14 Score=142.26 Aligned_cols=135 Identities=14% Similarity=0.092 Sum_probs=102.9
Q ss_pred CCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
...+|||||||+|.++..|+. ..|+++|+++..+..+. +.+...+. ++.+..+|...+++++++||+|++.. +
T Consensus 117 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~-~ 194 (312)
T 3vc1_A 117 PDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGN-RRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNE-S 194 (312)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEES-C
T ss_pred CCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECC-c
Confidence 346899999999999999875 46788888877766555 33334443 48899999999999889999999887 5
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCCCCC---CChhHHH-----------hHHHHHHHHHhcCcEEEEEecce
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA---HDPENRR-----------IWNAMYDLLKSMCWKIVSKKDQT 352 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~---~~~e~~~-----------~~~~l~~ll~~~Gf~~v~~~~~~ 352 (514)
++|. +...+|+++.++|||||++++.++.... ....... ..+++.++++++||+++..+...
T Consensus 195 l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 195 TMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp GGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred hhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEEeCC
Confidence 7777 5888999999999999999998753221 1111111 12578899999999998877653
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-13 Score=131.53 Aligned_cols=129 Identities=16% Similarity=0.218 Sum_probs=94.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC---CeEEEeecCCCCCCCCCCceEEEecc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRLPYPSRSFELAHCSR 287 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~---~~~~~~~d~~~lp~~~~sFDlV~~s~ 287 (514)
+..+|||||||+|.++..++.. .++++|+++. +++.|+++.. ++.+..+|...++++ ++||+|+|..
T Consensus 44 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~ 117 (234)
T 3dtn_A 44 ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEK-----MLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSAL 117 (234)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHH-----HHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEES
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHH-----HHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeC
Confidence 3478999999999999998853 4566665554 4455555422 688999999999887 8999999987
Q ss_pred cccccccchH--HHHHHHHhhCCCCeEEEEEeCCCCCC--------------------ChhHHH------------hHHH
Q 010274 288 CRIDWLQRDG--ILLLELDRLLRPGGYFVYSSPEAYAH--------------------DPENRR------------IWNA 333 (514)
Q Consensus 288 ~~l~~~~d~~--~lL~el~RvLrPGG~lvis~P~~~~~--------------------~~e~~~------------~~~~ 333 (514)
+++|++++. .+++++.++|||||+++++++..... ...... ..++
T Consensus 118 -~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (234)
T 3dtn_A 118 -SIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQ 196 (234)
T ss_dssp -CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHH
T ss_pred -ccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHH
Confidence 688887665 59999999999999999987432110 000000 1246
Q ss_pred HHHHHHhcCcEEEEEec
Q 010274 334 MYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 334 l~~ll~~~Gf~~v~~~~ 350 (514)
+.++++++||+.++...
T Consensus 197 ~~~ll~~aGF~~v~~~~ 213 (234)
T 3dtn_A 197 QLNWLKEAGFRDVSCIY 213 (234)
T ss_dssp HHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHcCCCceeeee
Confidence 77899999999887544
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.7e-14 Score=137.54 Aligned_cols=128 Identities=12% Similarity=0.190 Sum_probs=97.5
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..+|||||||+|.++..++. ..|+++|+ ++.+++.++++..++.+.++|...+++ +++||+|+++. +++|+
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~-----s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~-~l~~~ 130 (279)
T 3ccf_A 58 GEFILDLGCGTGQLTEKIAQSGAEVLGTDN-----AATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNA-MLHWV 130 (279)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCEEEEEES-----CHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEES-CGGGC
T ss_pred CCEEEEecCCCCHHHHHHHhCCCeEEEEEC-----CHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcc-hhhhC
Confidence 36899999999999999985 34556655 455556666665678889999998987 47999999888 68999
Q ss_pred cchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHH-----------------------HhHHHHHHHHHhcCcEEEEEec
Q 010274 294 QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR-----------------------RIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~-----------------------~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+++..++.++.|+|||||++++..+.... ..... ..-+++.++++++||+++..+.
T Consensus 131 ~d~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 209 (279)
T 3ccf_A 131 KEPEAAIASIHQALKSGGRFVAEFGGKGN-IKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAAL 209 (279)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECTTT-THHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEEEEEEE
T ss_pred cCHHHHHHHHHHhcCCCcEEEEEecCCcc-hHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEEEEEEE
Confidence 99999999999999999999998764321 00000 0124678899999998876554
Q ss_pred c
Q 010274 351 Q 351 (514)
Q Consensus 351 ~ 351 (514)
.
T Consensus 210 ~ 210 (279)
T 3ccf_A 210 F 210 (279)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.9e-14 Score=133.46 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=94.3
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..+|||||||+|.++..++.. .++++|+++. +++.++++. ++.+..++...++ ++++||+|+|+. +++|+
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~-----~~~~a~~~~-~~~~~~~d~~~~~-~~~~fD~v~~~~-~l~~~ 115 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAAGFDVDATDGSPE-----LAAEASRRL-GRPVRTMLFHQLD-AIDAYDAVWAHA-CLLHV 115 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHH-TSCCEECCGGGCC-CCSCEEEEEECS-CGGGS
T ss_pred CCcEEEECCCCCHHHHHHHHcCCeEEEECCCHH-----HHHHHHHhc-CCceEEeeeccCC-CCCcEEEEEecC-chhhc
Confidence 358999999999999999864 4566665554 445555542 4556677888888 778999999988 57877
Q ss_pred c--chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhH------HHhHHHHHHHHHhcC-cEEEEEecc
Q 010274 294 Q--RDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN------RRIWNAMYDLLKSMC-WKIVSKKDQ 351 (514)
Q Consensus 294 ~--d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~------~~~~~~l~~ll~~~G-f~~v~~~~~ 351 (514)
+ +...+|+++.++|||||+++++.+......... ....+++.++++++| |+++.....
T Consensus 116 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 116 PRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 7 667899999999999999999876432110000 012358889999999 998876654
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-13 Score=129.69 Aligned_cols=118 Identities=17% Similarity=0.289 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecC
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT 270 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~ 270 (514)
..+.+.+.+.+... ..+..+|||||||+|.++..++.. .++++|+++.++..+... ....+.++.+..+|.
T Consensus 21 ~~~~~~~~~~l~~~------~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~-~~~~~~~~~~~~~d~ 93 (246)
T 1y8c_A 21 KKWSDFIIEKCVEN------NLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENK-FRSQGLKPRLACQDI 93 (246)
T ss_dssp HHHHHHHHHHHHTT------TCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHH-HHHTTCCCEEECCCG
T ss_pred HHHHHHHHHHHHHh------CCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHH-HhhcCCCeEEEeccc
Confidence 44555566666532 123468999999999999999853 577887777666555433 233345788899998
Q ss_pred CCCCCCCCCceEEEecccccccc---cchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 271 KRLPYPSRSFELAHCSRCRIDWL---QRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 271 ~~lp~~~~sFDlV~~s~~~l~~~---~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
..++++ ++||+|++...+++|+ .+...+|+++.++|||||++++..+
T Consensus 94 ~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 94 SNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 888877 8999999886357777 5667899999999999999999665
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-13 Score=134.31 Aligned_cols=96 Identities=19% Similarity=0.277 Sum_probs=78.3
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..+|||||||+|.++..|+.. .|+++ |+++.+++.|+++..++.+..+|+..+++ +++||+|+|...+++|+
T Consensus 51 ~~~vLDiGcG~G~~~~~l~~~~~~v~gv-----D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~ 124 (263)
T 3pfg_A 51 AASLLDVACGTGMHLRHLADSFGTVEGL-----ELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHL 124 (263)
T ss_dssp CCEEEEETCTTSHHHHHHTTTSSEEEEE-----ESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGS
T ss_pred CCcEEEeCCcCCHHHHHHHHcCCeEEEE-----ECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhc
Confidence 368999999999999999864 35555 45556667777776688999999999887 68999999887468887
Q ss_pred c---chHHHHHHHHhhCCCCeEEEEEe
Q 010274 294 Q---RDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 294 ~---d~~~lL~el~RvLrPGG~lvis~ 317 (514)
. +...+|+++.++|||||+|++..
T Consensus 125 ~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 125 AGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp CHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 5 44678999999999999999963
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.49 E-value=5e-14 Score=137.10 Aligned_cols=98 Identities=19% Similarity=0.325 Sum_probs=81.6
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+|||||||+|.++..++. ..++++|+++ .+++.++++..++.+..+|...++ ++++||+|+++. +++
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~-----~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~-~l~ 106 (259)
T 2p35_A 34 VLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDD-----DMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANA-VFQ 106 (259)
T ss_dssp CSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCH-----HHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEES-CGG
T ss_pred CCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeC-chh
Confidence 35799999999999998874 3566666554 455666666667889999998888 778999999888 689
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
|+++...+|.++.++|||||+++++.+..
T Consensus 107 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 107 WVPDHLAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp GSTTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred hCCCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 99999999999999999999999988643
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.6e-14 Score=137.27 Aligned_cols=142 Identities=15% Similarity=0.100 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecC
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT 270 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~ 270 (514)
..+.+.+.+.+.. ....+|||||||+|.++..+++ ..|+++|+++ .+++.++++. ++.+.+.|.
T Consensus 20 ~~~~~~l~~~~~~--------~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~~-~~~~~~~d~ 85 (261)
T 3ege_A 20 IRIVNAIINLLNL--------PKGSVIADIGAGTGGYSVALANQGLFVYAVEPSI-----VMRQQAVVHP-QVEWFTGYA 85 (261)
T ss_dssp HHHHHHHHHHHCC--------CTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCH-----HHHHSSCCCT-TEEEECCCT
T ss_pred HHHHHHHHHHhCC--------CCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCH-----HHHHHHHhcc-CCEEEECch
Confidence 3455666666652 2346899999999999999985 3456665554 5555555544 789999999
Q ss_pred CCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCC--------CChhHHH-------hHHHHH
Q 010274 271 KRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA--------HDPENRR-------IWNAMY 335 (514)
Q Consensus 271 ~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~--------~~~e~~~-------~~~~l~ 335 (514)
..+++++++||+|+|.. +++|+++...+++++.++|| ||++++.++.... ....... ..+.+.
T Consensus 86 ~~~~~~~~~fD~v~~~~-~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (261)
T 3ege_A 86 ENLALPDKSVDGVISIL-AIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN 163 (261)
T ss_dssp TSCCSCTTCBSEEEEES-CGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH
T ss_pred hhCCCCCCCEeEEEEcc-hHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH
Confidence 99999999999999888 68888999999999999999 9988877654211 1111111 124677
Q ss_pred HHHHhcCcEEEEEecc
Q 010274 336 DLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 336 ~ll~~~Gf~~v~~~~~ 351 (514)
+++++||..+..+..
T Consensus 164 -~l~~aGF~~v~~~~~ 178 (261)
T 3ege_A 164 -LLQENTKRRVEAIPF 178 (261)
T ss_dssp -HHHHHHCSEEEEEEC
T ss_pred -HHHHcCCCceeEEEe
Confidence 999999988766554
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=133.45 Aligned_cols=129 Identities=23% Similarity=0.352 Sum_probs=98.1
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||||||+|.++..++.. .++++|+ ++.+++.++++.. ++.+..+|...+++++++||+|++.. ++
T Consensus 44 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~-----s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l 117 (243)
T 3bkw_A 44 GLRIVDLGCGFGWFCRWAHEHGASYVLGLDL-----SEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSL-AL 117 (243)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEEES-----CHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEES-CG
T ss_pred CCEEEEEcCcCCHHHHHHHHCCCCeEEEEcC-----CHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEec-cc
Confidence 468999999999999999864 4555554 5555666666643 57888889888888888999999888 68
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCC---------C-------------CC------hh-HH-------HhHHHH
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAY---------A-------------HD------PE-NR-------RIWNAM 334 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~---------~-------------~~------~e-~~-------~~~~~l 334 (514)
+|.++...+++++.++|||||+++++++... . +. .. .. ...+++
T Consensus 118 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 197 (243)
T 3bkw_A 118 HYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTT 197 (243)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCHHHH
T ss_pred cccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccHHHH
Confidence 8889999999999999999999999874310 0 00 00 00 124678
Q ss_pred HHHHHhcCcEEEEEec
Q 010274 335 YDLLKSMCWKIVSKKD 350 (514)
Q Consensus 335 ~~ll~~~Gf~~v~~~~ 350 (514)
.++++++||+++....
T Consensus 198 ~~~l~~aGF~~~~~~~ 213 (243)
T 3bkw_A 198 LNALIRSGFAIEHVEE 213 (243)
T ss_dssp HHHHHHTTCEEEEEEE
T ss_pred HHHHHHcCCEeeeecc
Confidence 8999999999887654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.7e-14 Score=140.24 Aligned_cols=101 Identities=20% Similarity=0.200 Sum_probs=79.5
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC----CCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG----IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg----~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
.+|||||||+|.++..|+.. .|+++|+++.++..+.. .+...+ .++.+.++|+..+++ +++||+|+|+..++
T Consensus 84 ~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~ 161 (299)
T 3g2m_A 84 GPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRK-RLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSI 161 (299)
T ss_dssp SCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHH-HHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHH
T ss_pred CcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHH-HHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCccc
Confidence 37999999999999999854 67788777666654442 222223 568899999999987 58999999887678
Q ss_pred ccccc--hHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 291 DWLQR--DGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 291 ~~~~d--~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
++... ...+|+++.++|||||+|++.++.
T Consensus 162 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 162 NELDEADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp TTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 87763 477999999999999999998753
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-13 Score=136.84 Aligned_cols=100 Identities=18% Similarity=0.262 Sum_probs=75.9
Q ss_pred CCeEEEECCCCchHHHHHhcC------CCccccCChhhhhHHHHHHHHHc-CCCeEEEeecCCCCCCCCCCceEEEeccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~------~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
..+|||||||+|.++..|++. .|+|+|+++.++..+..+..... ..++.+.++|+..+|++ .||+|++..
T Consensus 71 ~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~~- 147 (261)
T 4gek_A 71 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF- 147 (261)
T ss_dssp TCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEES-
T ss_pred CCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceeee-
Confidence 358999999999999998853 46677666666554442222211 23678899999988875 599999887
Q ss_pred ccccccch--HHHHHHHHhhCCCCeEEEEEeC
Q 010274 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 289 ~l~~~~d~--~~lL~el~RvLrPGG~lvis~P 318 (514)
+++|+++. ..+|++++|+|||||.|+++++
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence 68888654 4689999999999999999864
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=131.00 Aligned_cols=102 Identities=19% Similarity=0.339 Sum_probs=80.9
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccc--cc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR--ID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~--l~ 291 (514)
..+|||||||+|.++..++.. .++++|+++..+..+.. .+...+.++.+..+|...+++++++||+|+++. . ++
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-~~~~~ 116 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKARE-YAKSRESNVEFIVGDARKLSFEDKTFDYVIFID-SIVHF 116 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCCCEEEECCTTSCCSCTTCEEEEEEES-CGGGC
T ss_pred CCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHhcCCCceEEECchhcCCCCCCcEEEEEEcC-chHhC
Confidence 468999999999999998854 57788877766655543 233335678899999988888888999999887 4 44
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
+..+...+++++.++|||||++++..+.
T Consensus 117 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 117 EPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 4566788999999999999999998753
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-14 Score=135.76 Aligned_cols=134 Identities=12% Similarity=0.016 Sum_probs=90.0
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHH------------cCCCeEEEeecCCCCCCCC-CCc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALE------------RGIPSTLGVLGTKRLPYPS-RSF 280 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~------------rg~~~~~~~~d~~~lp~~~-~sF 280 (514)
..+|||+|||+|.++..|++ ..|+|+|+++.++..+..+.... ...++.+.++|+..+++++ ++|
T Consensus 23 ~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~f 102 (203)
T 1pjz_A 23 GARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHC 102 (203)
T ss_dssp TCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSE
T ss_pred CCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCCE
Confidence 35899999999999999985 45777777766665443221100 1346889999999998765 799
Q ss_pred eEEEecccccccccch--HHHHHHHHhhCCCCeEEEEEeCCCCC---CChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 281 ELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYA---HDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 281 DlV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~---~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
|+|++.. ++++++.. ..+++++.|+|||||++++.+..... ........-+++.+++++ ||+++..+..
T Consensus 103 D~v~~~~-~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 103 AAFYDRA-AMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp EEEEEES-CGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred EEEEECc-chhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEeccc
Confidence 9999876 46666533 56899999999999985443311100 000000113577888888 9987765543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.48 E-value=8.2e-14 Score=145.30 Aligned_cols=135 Identities=18% Similarity=0.175 Sum_probs=100.7
Q ss_pred CCCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHc----C----CCeEEEeecCCCC------CC
Q 010274 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER----G----IPSTLGVLGTKRL------PY 275 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~r----g----~~~~~~~~d~~~l------p~ 275 (514)
+..+|||||||+|.++..|+. ..|+++|+++.++..+..+..... | .++.+..+|+..+ ++
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 346899999999999988874 267788777766654443322210 3 5788999998887 88
Q ss_pred CCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHH--------------HhHHHHHHHHHhc
Q 010274 276 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR--------------RIWNAMYDLLKSM 341 (514)
Q Consensus 276 ~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~--------------~~~~~l~~ll~~~ 341 (514)
++++||+|+++. +++|.+++..+|+++.|+|||||+|+++++.......... ..++++.++++++
T Consensus 163 ~~~~fD~V~~~~-~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 241 (383)
T 4fsd_A 163 PDSSVDIVISNC-VCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEA 241 (383)
T ss_dssp CTTCEEEEEEES-CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHT
T ss_pred CCCCEEEEEEcc-chhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHC
Confidence 889999999887 6889999999999999999999999998653322111111 1126889999999
Q ss_pred CcEEEEEec
Q 010274 342 CWKIVSKKD 350 (514)
Q Consensus 342 Gf~~v~~~~ 350 (514)
||+.+....
T Consensus 242 GF~~v~~~~ 250 (383)
T 4fsd_A 242 GFRDVRLVS 250 (383)
T ss_dssp TCCCEEEEE
T ss_pred CCceEEEEe
Confidence 998776544
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.4e-13 Score=128.36 Aligned_cols=118 Identities=17% Similarity=0.195 Sum_probs=84.6
Q ss_pred cHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcC-----C
Q 010274 191 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERG-----I 261 (514)
Q Consensus 191 ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg-----~ 261 (514)
......+.+.+.+.. .+..+|||||||+|.++..|+. ..++++|+++.++..+..+...... .
T Consensus 13 ~~~~~~~~l~~~l~~--------~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~ 84 (219)
T 3jwg_A 13 LNQQRLGTVVAVLKS--------VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRK 84 (219)
T ss_dssp HHHHHHHHHHHHHHH--------TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHT
T ss_pred chHHHHHHHHHHHhh--------cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCc
Confidence 334444555555542 1235899999999999999985 3577887776666544432221111 1
Q ss_pred CeEEEeecCCCCCCCCCCceEEEecccccccccch--HHHHHHHHhhCCCCeEEEEEe
Q 010274 262 PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 262 ~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~ 317 (514)
++.+..+|+..+++++++||+|+|.. +++|++++ ..+++++.++|||||.++.+.
T Consensus 85 ~v~~~~~d~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 85 RISLFQSSLVYRDKRFSGYDAATVIE-VIEHLDENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp TEEEEECCSSSCCGGGTTCSEEEEES-CGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred ceEEEeCcccccccccCCCCEEEEHH-HHHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 67888999888888778999999888 68888766 689999999999999666543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=136.46 Aligned_cols=131 Identities=11% Similarity=0.150 Sum_probs=93.8
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||||||+|.++..++. ..|+++|+++..+..+.. .+.+.+ .++.+...|...+| ++||+|++.. ++
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~-~l 139 (287)
T 1kpg_A 65 GMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQ-LVANSENLRSKRVLLAGWEQFD---EPVDRIVSIG-AF 139 (287)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHTCCCCSCEEEEESCGGGCC---CCCSEEEEES-CG
T ss_pred cCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHhcCCCCCeEEEECChhhCC---CCeeEEEEeC-ch
Confidence 46899999999999998883 467777777665544442 222223 25788888887766 7899999888 68
Q ss_pred ccc--cchHHHHHHHHhhCCCCeEEEEEeCCCCCCCh---------h---HH--------------HhHHHHHHHHHhcC
Q 010274 291 DWL--QRDGILLLELDRLLRPGGYFVYSSPEAYAHDP---------E---NR--------------RIWNAMYDLLKSMC 342 (514)
Q Consensus 291 ~~~--~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~---------e---~~--------------~~~~~l~~ll~~~G 342 (514)
+|+ .+...+++++.++|||||++++.++....... . .. ....++.++++++|
T Consensus 140 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG 219 (287)
T 1kpg_A 140 EHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANG 219 (287)
T ss_dssp GGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTT
T ss_pred hhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHhCC
Confidence 887 56788999999999999999997753211000 0 00 01357888999999
Q ss_pred cEEEEEecc
Q 010274 343 WKIVSKKDQ 351 (514)
Q Consensus 343 f~~v~~~~~ 351 (514)
|+++..+..
T Consensus 220 f~~~~~~~~ 228 (287)
T 1kpg_A 220 FTVTRVQSL 228 (287)
T ss_dssp CEEEEEEEC
T ss_pred cEEEEEEeC
Confidence 998876543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-13 Score=124.68 Aligned_cols=125 Identities=17% Similarity=0.251 Sum_probs=97.0
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..+|||||||+|.++..++.. .++++ |+++.+++.++++..++.+...|...+++++++||+|+++..++++.
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~~~v~~~-----D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~ 121 (195)
T 3cgg_A 47 GAKILDAGCGQGRIGGYLSKQGHDVLGT-----DLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFL 121 (195)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEE-----ESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGS
T ss_pred CCeEEEECCCCCHHHHHHHHCCCcEEEE-----cCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhc
Confidence 358999999999999999864 34555 55556667777776678888999888888888999999874467776
Q ss_pred c--chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 294 Q--RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 294 ~--d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
. +...++.++.++|+|||.+++..+..... ...++.++++++||+++.....
T Consensus 122 ~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~------~~~~~~~~l~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 122 AEDGREPALANIHRALGADGRAVIGFGAGRGW------VFGDFLEVAERVGLELENAFES 175 (195)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEETTSSC------CHHHHHHHHHHHTEEEEEEESS
T ss_pred ChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCc------CHHHHHHHHHHcCCEEeeeecc
Confidence 3 34779999999999999999987654322 2357788999999998866543
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=130.94 Aligned_cols=125 Identities=18% Similarity=0.223 Sum_probs=97.4
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccccch
Q 010274 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 296 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~ 296 (514)
.+|||||||+|.++..++.. +++|+++ .+++.++++ ++.+...|...+++++++||+|++.. +++|.+++
T Consensus 49 ~~vLDiG~G~G~~~~~l~~~--~~vD~s~-----~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~~~~~ 118 (219)
T 1vlm_A 49 GRGVEIGVGTGRFAVPLKIK--IGVEPSE-----RMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVT-TICFVDDP 118 (219)
T ss_dssp SCEEEETCTTSTTHHHHTCC--EEEESCH-----HHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEES-CGGGSSCH
T ss_pred CcEEEeCCCCCHHHHHHHHH--hccCCCH-----HHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcc-hHhhccCH
Confidence 57999999999999999876 6776655 444666665 56788888888898888999999888 68889999
Q ss_pred HHHHHHHHhhCCCCeEEEEEeCCCCCCChh---------------HHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 297 GILLLELDRLLRPGGYFVYSSPEAYAHDPE---------------NRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 297 ~~lL~el~RvLrPGG~lvis~P~~~~~~~e---------------~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
..+|+++.++|+|||+++++.+........ .....+++.++++++||+++.....
T Consensus 119 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 119 ERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 999999999999999999987643211000 0012368899999999998876544
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=133.40 Aligned_cols=95 Identities=17% Similarity=0.236 Sum_probs=79.0
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHc----CCCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~r----g~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
..+|||||||+|.++..++.. .++++|+++. +++.++++ ..++.+..+|...+++++++||+|++.. +
T Consensus 40 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~ 113 (263)
T 2yqz_A 40 EPVFLELGVGTGRIALPLIARGYRYIALDADAA-----MLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVH-L 113 (263)
T ss_dssp CCEEEEETCTTSTTHHHHHTTTCEEEEEESCHH-----HHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEES-C
T ss_pred CCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHH-----HHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECC-c
Confidence 468999999999999999864 4566665554 44555544 3568899999999999889999999888 6
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEE
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis 316 (514)
++|.++...++.++.++|||||++++.
T Consensus 114 l~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 114 WHLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 899999999999999999999999987
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-13 Score=126.01 Aligned_cols=125 Identities=12% Similarity=0.134 Sum_probs=93.8
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..+|||||||+|.++..++.. .++++|+ ++.+++.++++..++.+...| +++++++||+|+++. +++|.
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~-----s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~-~l~~~ 88 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEFATKLYCIDI-----NVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFAN-SFHDM 88 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTTEEEEEEECS-----CHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEES-CSTTC
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEeC-----CHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEcc-chhcc
Confidence 358999999999999999864 4556655 455556666666678888777 777888999999888 68888
Q ss_pred cchHHHHHHHHhhCCCCeEEEEEeCCCCCC----ChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 294 QRDGILLLELDRLLRPGGYFVYSSPEAYAH----DPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~lvis~P~~~~~----~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
++...+++++.++|||||++++.++..... .......-+++.++++ ||+++.....
T Consensus 89 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~ 148 (170)
T 3i9f_A 89 DDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNP 148 (170)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECS
T ss_pred cCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCC
Confidence 999999999999999999999987532110 0111112356778888 9999887654
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=8.2e-14 Score=139.38 Aligned_cols=132 Identities=8% Similarity=0.062 Sum_probs=86.6
Q ss_pred CCCeEEEECCCCchHHHHH----hc--CCC----ccccCChhhhhHHHHHHHHHcCC-CeE--EEeecCCCCC------C
Q 010274 215 NIRNVLDVGCGVASFGAYL----LS--HDI----IAMSLAPNDVHENQIQFALERGI-PST--LGVLGTKRLP------Y 275 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L----a~--~~V----~gvdis~~dis~a~~~~A~~rg~-~~~--~~~~d~~~lp------~ 275 (514)
...+|||||||+|.++..+ +. ..+ +++|+++.++..+..+.+...+. ++. +...+...++ +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 3468999999999766533 22 233 77777776665554333222232 333 3344444433 5
Q ss_pred CCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhH---------------HHhHHHHHHHHHh
Q 010274 276 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN---------------RRIWNAMYDLLKS 340 (514)
Q Consensus 276 ~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~---------------~~~~~~l~~ll~~ 340 (514)
++++||+|+|+. ++||++++..+|+++.|+|||||+|++..+......... ...-.++.+++++
T Consensus 132 ~~~~fD~V~~~~-~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 210 (292)
T 2aot_A 132 ELQKWDFIHMIQ-MLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDN 210 (292)
T ss_dssp CCCCEEEEEEES-CGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHHH
T ss_pred CCCceeEEEEee-eeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHHH
Confidence 678999999988 699999999999999999999999998754321000000 0012477889999
Q ss_pred cCcEEEE
Q 010274 341 MCWKIVS 347 (514)
Q Consensus 341 ~Gf~~v~ 347 (514)
+||+.+.
T Consensus 211 aGf~~~~ 217 (292)
T 2aot_A 211 LGLKYEC 217 (292)
T ss_dssp HTCCEEE
T ss_pred CCCceEE
Confidence 9998765
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.7e-13 Score=134.20 Aligned_cols=131 Identities=11% Similarity=0.152 Sum_probs=94.9
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||||||+|.++..++. ..|+++|+++..+..+.. .+...+. ++.+..+|...+ +++||+|++.. ++
T Consensus 73 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~-~~ 147 (302)
T 3hem_A 73 GMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKA-MFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLG-AF 147 (302)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHH-HHHHSCCSSCEEEEECCGGGC---CCCCSEEEEES-CG
T ss_pred cCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEECCHHHc---CCCccEEEEcc-hH
Confidence 46899999999999999884 467888877776655553 3333344 478888888766 58999999887 68
Q ss_pred ccccch---------HHHHHHHHhhCCCCeEEEEEeCCCCCCCh----------------hH----------HHhHHHHH
Q 010274 291 DWLQRD---------GILLLELDRLLRPGGYFVYSSPEAYAHDP----------------EN----------RRIWNAMY 335 (514)
Q Consensus 291 ~~~~d~---------~~lL~el~RvLrPGG~lvis~P~~~~~~~----------------e~----------~~~~~~l~ 335 (514)
+|++++ ..+++++.++|||||++++.++....... .. .....++.
T Consensus 148 ~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~ 227 (302)
T 3hem_A 148 EHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVD 227 (302)
T ss_dssp GGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHH
T ss_pred HhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCCCHHHHH
Confidence 888665 68999999999999999997643211000 00 00124788
Q ss_pred HHHHhcCcEEEEEecc
Q 010274 336 DLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 336 ~ll~~~Gf~~v~~~~~ 351 (514)
++++++||+++..+..
T Consensus 228 ~~l~~aGf~~~~~~~~ 243 (302)
T 3hem_A 228 YYSSNAGWKVERYHRI 243 (302)
T ss_dssp HHHHHHTCEEEEEEEC
T ss_pred HHHHhCCcEEEEEEeC
Confidence 8999999998876543
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=131.70 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=93.9
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHH-cCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~-rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
.+|||||||+|.++..|+.. .|+++|+++..+..+....... ...++.+..+|...++ ++++||+|++.. +++++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~-~l~~~ 145 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYV-FFCAI 145 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEES-STTTS
T ss_pred CCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEECh-hhhcC
Confidence 48999999999999999853 4667766665554333221110 1124788999988877 446999999887 67777
Q ss_pred c--chHHHHHHHHhhCCCCeEEEEEeCCCCCCC--hhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 294 Q--RDGILLLELDRLLRPGGYFVYSSPEAYAHD--PENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 294 ~--d~~~lL~el~RvLrPGG~lvis~P~~~~~~--~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
+ +...+++++.++|||||++++......... .......+++.++++++||+++..+..
T Consensus 146 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 207 (235)
T 3lcc_A 146 EPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEEN 207 (235)
T ss_dssp CGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEec
Confidence 7 678899999999999999998764321110 000012357889999999999876654
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=136.97 Aligned_cols=132 Identities=19% Similarity=0.167 Sum_probs=95.3
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCC--eEEEeecCCCCCCCCCCceEEEeccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~--~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
..+|||||||+|.++..|+. ..|+++|+++..+..+.. .+...+.. +.+..+|...++++ ++||+|++..
T Consensus 119 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~- 195 (305)
T 3ocj_A 119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATR-LAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNG- 195 (305)
T ss_dssp TCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHH-HHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCS-
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHH-HHHhcCCCCceEEEECchhcCCcc-CCeEEEEECC-
Confidence 46899999999999999852 356777766655544432 22222332 78899999999988 8999999877
Q ss_pred ccccccchHH---HHHHHHhhCCCCeEEEEEeCCC-------C--C---CChhHH------------------HhHHHHH
Q 010274 289 RIDWLQRDGI---LLLELDRLLRPGGYFVYSSPEA-------Y--A---HDPENR------------------RIWNAMY 335 (514)
Q Consensus 289 ~l~~~~d~~~---lL~el~RvLrPGG~lvis~P~~-------~--~---~~~e~~------------------~~~~~l~ 335 (514)
+++|.+++.. +++++.++|||||++++++... . . ...... ...+++.
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTR 275 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHH
Confidence 6888877754 7999999999999999987321 1 0 011000 1235788
Q ss_pred HHHHhcCcEEEEEec
Q 010274 336 DLLKSMCWKIVSKKD 350 (514)
Q Consensus 336 ~ll~~~Gf~~v~~~~ 350 (514)
++++++||+++....
T Consensus 276 ~~l~~aGF~~v~~~~ 290 (305)
T 3ocj_A 276 AQLEEAGFTDLRFED 290 (305)
T ss_dssp HHHHHTTCEEEEEEC
T ss_pred HHHHHCCCEEEEEEc
Confidence 999999999988764
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-13 Score=130.12 Aligned_cols=126 Identities=20% Similarity=0.263 Sum_probs=92.3
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCC---CCCC-CCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL---PYPS-RSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~l---p~~~-~sFDlV~~s~~~l 290 (514)
.+|||||||+|.++..++.. .++++ |+++.+++.++++ ....+...+...+ ++.. .+||+|+|+. ++
T Consensus 54 ~~vLdiG~G~G~~~~~l~~~~~~v~~v-----D~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~-~l 126 (227)
T 3e8s_A 54 ERVLDLGCGEGWLLRALADRGIEAVGV-----DGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGKDYDLICANF-AL 126 (227)
T ss_dssp SEEEEETCTTCHHHHHHHTTTCEEEEE-----ESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCCEEEEEEES-CC
T ss_pred CEEEEeCCCCCHHHHHHHHCCCEEEEE-----cCCHHHHHHHHHh-cccccchhhHHhhcccccccCCCccEEEECc-hh
Confidence 68999999999999999865 34555 5555666777776 4556666665555 5444 4599999988 46
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChh-----------------------HHHhHHHHHHHHHhcCcEEEE
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE-----------------------NRRIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e-----------------------~~~~~~~l~~ll~~~Gf~~v~ 347 (514)
+ ..+...+++++.++|||||+++++++........ .....+++.++++++||+++.
T Consensus 127 ~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 205 (227)
T 3e8s_A 127 L-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVS 205 (227)
T ss_dssp C-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEE
T ss_pred h-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEE
Confidence 6 7888999999999999999999988643211100 001246889999999999987
Q ss_pred Eec
Q 010274 348 KKD 350 (514)
Q Consensus 348 ~~~ 350 (514)
.+.
T Consensus 206 ~~~ 208 (227)
T 3e8s_A 206 LQE 208 (227)
T ss_dssp EEC
T ss_pred Eec
Confidence 654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.44 E-value=7.3e-13 Score=126.07 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=77.1
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC------CeEEEeecCCCCCCCCCCceEEEe
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI------PSTLGVLGTKRLPYPSRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~------~~~~~~~d~~~lp~~~~sFDlV~~ 285 (514)
..+|||||||+|.++..|+. ..++++|+++.++..+..+. ...+. ++.+..+|+...+.++++||+|+|
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 108 (217)
T 3jwh_A 30 ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERL-DRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATV 108 (217)
T ss_dssp CCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHH-TTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHH-HHhcCCcccCcceEEEeCCcccccccCCCcCEEee
Confidence 35899999999999999985 35778877766665444222 11222 578888888777777789999998
Q ss_pred cccccccccch--HHHHHHHHhhCCCCeEEEEEe
Q 010274 286 SRCRIDWLQRD--GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 286 s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~ 317 (514)
.. +++|++++ ..+++++.++|||||+++++.
T Consensus 109 ~~-~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 109 IE-VIEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp ES-CGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred HH-HHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 88 68888766 789999999999999777654
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-14 Score=150.08 Aligned_cols=131 Identities=13% Similarity=0.139 Sum_probs=95.4
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeE---EEeecCCCCCCCCCCceEEEeccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPST---LGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~---~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
..+|||||||+|.++..|++. +..+.+.|+++.+++.|++++.+.. +...+...+++++++||+|++.. +++|
T Consensus 108 ~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~-vl~h 183 (416)
T 4e2x_A 108 DPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAAN-TLCH 183 (416)
T ss_dssp SCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEES-CGGG
T ss_pred CCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECC-hHHh
Confidence 468999999999999999865 2233444556666678887765433 22333455667778999999888 7999
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeCCCC--------CC-ChhH--HHhHHHHHHHHHhcCcEEEEEec
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSPEAY--------AH-DPEN--RRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P~~~--------~~-~~e~--~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
++++..+|+++.++|||||++++..|... .. ..+. ....+++..+++++||+++..+.
T Consensus 184 ~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~ 252 (416)
T 4e2x_A 184 IPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQR 252 (416)
T ss_dssp CTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEE
Confidence 99999999999999999999999876410 00 0000 01235789999999999887655
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-13 Score=126.68 Aligned_cols=131 Identities=15% Similarity=0.140 Sum_probs=93.9
Q ss_pred eEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccccc
Q 010274 218 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d 295 (514)
+|||||||+|.++..++.. .++++|+++.++..+.. .+...+.++.+...|...+++++++||+|+++.. +....+
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-~~~~~~ 109 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQ-LAQEKGVKITTVQSNLADFDIVADAWEGIVSIFC-HLPSSL 109 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHH-HHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECC-CCCHHH
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHH-HHHhcCCceEEEEcChhhcCCCcCCccEEEEEhh-cCCHHH
Confidence 7999999999999999854 56777777666654442 2333356788889999888888889999998652 222345
Q ss_pred hHHHHHHHHhhCCCCeEEEEEeCCCCCC-----Ch---hHHHhHHHHHHHHHhcCcEEEEEecce
Q 010274 296 DGILLLELDRLLRPGGYFVYSSPEAYAH-----DP---ENRRIWNAMYDLLKSMCWKIVSKKDQT 352 (514)
Q Consensus 296 ~~~lL~el~RvLrPGG~lvis~P~~~~~-----~~---e~~~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (514)
...++.++.++|||||++++.++..... .. .....-+++.++++ ||+++..+...
T Consensus 110 ~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~~ 172 (202)
T 2kw5_A 110 RQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNLE 172 (202)
T ss_dssp HHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEEE
Confidence 6789999999999999999987532110 00 01112357888888 99988766543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.8e-13 Score=127.78 Aligned_cols=97 Identities=22% Similarity=0.316 Sum_probs=77.8
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..+|||||||+|.++..++.. .++++|++ +.+++.++++..++.+..+|...+++ +++||+|+|+..+++|+
T Consensus 41 ~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s-----~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~ 114 (239)
T 3bxo_A 41 ASSLLDVACGTGTHLEHFTKEFGDTAGLELS-----EDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYL 114 (239)
T ss_dssp CCEEEEETCTTSHHHHHHHHHHSEEEEEESC-----HHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGC
T ss_pred CCeEEEecccCCHHHHHHHHhCCcEEEEeCC-----HHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhc
Confidence 358999999999999998853 46666555 45556666666678889999888887 67999999877678887
Q ss_pred c---chHHHHHHHHhhCCCCeEEEEEeC
Q 010274 294 Q---RDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 294 ~---d~~~lL~el~RvLrPGG~lvis~P 318 (514)
. +...+|+++.++|||||++++..+
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 115 KTTEELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp CSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 4 446799999999999999999764
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-13 Score=134.09 Aligned_cols=145 Identities=14% Similarity=0.075 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEeec
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG 269 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d 269 (514)
..+.+.+++.+.. .+.+|||||||+|..+.++++. .++++|+++..+..+. +.+...+..+.+..++
T Consensus 47 ~~~m~~~a~~~~~---------~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~-~~~~~~~~~~~~~~~~ 116 (236)
T 3orh_A 47 TPYMHALAAAASS---------KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLR-DWAPRQTHKVIPLKGL 116 (236)
T ss_dssp HHHHHHHHHHHTT---------TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHH-HHGGGCSSEEEEEESC
T ss_pred HHHHHHHHHhhcc---------CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHH-HHHhhCCCceEEEeeh
Confidence 4556666666642 3368999999999999999854 5677777766554443 3333445566777777
Q ss_pred CCCC--CCCCCCceEEEec----ccccccccchHHHHHHHHhhCCCCeEEEEEeCCC------CCCChhHHHhHHHHHHH
Q 010274 270 TKRL--PYPSRSFELAHCS----RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA------YAHDPENRRIWNAMYDL 337 (514)
Q Consensus 270 ~~~l--p~~~~sFDlV~~s----~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~------~~~~~e~~~~~~~l~~l 337 (514)
...+ ++++++||.|++- ...+++..+...++.++.|+|||||+|++..... ..+.......-+.....
T Consensus 117 a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (236)
T 3orh_A 117 WEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPA 196 (236)
T ss_dssp HHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHH
T ss_pred HHhhcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHH
Confidence 5443 5778899999742 2245667788899999999999999999854210 00111111112345567
Q ss_pred HHhcCcEEEE
Q 010274 338 LKSMCWKIVS 347 (514)
Q Consensus 338 l~~~Gf~~v~ 347 (514)
+.++||+...
T Consensus 197 L~eaGF~~~~ 206 (236)
T 3orh_A 197 LLEAGFRREN 206 (236)
T ss_dssp HHHHTCCGGG
T ss_pred HHHcCCeEEE
Confidence 7889997543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.1e-13 Score=125.82 Aligned_cols=131 Identities=15% Similarity=0.231 Sum_probs=97.1
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC--CCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR--LPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~--lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..+|||||||+|.++..++.. +..+.+.|+++.+++.++++.. .+...|... +++++++||+|+++. +++|.
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~v~~~~-~l~~~ 106 (230)
T 3cc8_A 33 WKEVLDIGCSSGALGAAIKEN---GTRVSGIEAFPEAAEQAKEKLD--HVVLGDIETMDMPYEEEQFDCVIFGD-VLEHL 106 (230)
T ss_dssp CSEEEEETCTTSHHHHHHHTT---TCEEEEEESSHHHHHHHHTTSS--EEEESCTTTCCCCSCTTCEEEEEEES-CGGGS
T ss_pred CCcEEEeCCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhCC--cEEEcchhhcCCCCCCCccCEEEECC-hhhhc
Confidence 468999999999999999864 2334444555666677776543 566777665 677788999999887 68889
Q ss_pred cchHHHHHHHHhhCCCCeEEEEEeCCCCC-------------CCh------h--HHHhHHHHHHHHHhcCcEEEEEecce
Q 010274 294 QRDGILLLELDRLLRPGGYFVYSSPEAYA-------------HDP------E--NRRIWNAMYDLLKSMCWKIVSKKDQT 352 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~lvis~P~~~~-------------~~~------e--~~~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (514)
+++..++.++.++|+|||+++++.|.... ... . .....+++.++++++||+++......
T Consensus 107 ~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 107 FDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDRVY 186 (230)
T ss_dssp SCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEEecc
Confidence 99999999999999999999998865211 000 0 00123588899999999988776643
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-12 Score=120.53 Aligned_cols=132 Identities=17% Similarity=0.267 Sum_probs=94.7
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
..+|||||||+|.++..++. ..++++|+++..+..+..... ..+. ++.+..+|...+++ +++||+|+++. +++|
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~-~l~~ 109 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKS-IENLDNLHTRVVDLNNLTF-DRQYDFILSTV-VLMF 109 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-HHTCTTEEEEECCGGGCCC-CCCEEEEEEES-CGGG
T ss_pred CCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHH-hCCCCCcEEEEcchhhCCC-CCCceEEEEcc-hhhh
Confidence 35899999999999999985 467888888777665553333 3343 68888999888888 78999999888 5777
Q ss_pred cc--chHHHHHHHHhhCCCCeEEEEEeCC---CCCCChhH--HHhHHHHHHHHHhcCcEEEEEecce
Q 010274 293 LQ--RDGILLLELDRLLRPGGYFVYSSPE---AYAHDPEN--RRIWNAMYDLLKSMCWKIVSKKDQT 352 (514)
Q Consensus 293 ~~--d~~~lL~el~RvLrPGG~lvis~P~---~~~~~~e~--~~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (514)
.+ +...++.++.++|||||++++..+. .+...... ...-+++.++++. |+++..+...
T Consensus 110 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~~~~ 174 (199)
T 2xvm_A 110 LEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYNEDV 174 (199)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEECCE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEecccc
Confidence 76 6688999999999999998876531 11100000 0012366777776 9988876653
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=7.2e-13 Score=122.78 Aligned_cols=134 Identities=11% Similarity=0.007 Sum_probs=84.1
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC-CCCCCceEEEeccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-YPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp-~~~~sFDlV~~s~~~l~~ 292 (514)
..+|||+|||+|.++..|+. ..|+++|+++.++..+..+.......++.+...+...++ +.+++||+|+++...+++
T Consensus 23 ~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~~ 102 (185)
T 3mti_A 23 ESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLPS 102 (185)
T ss_dssp TCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC----
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCCCC
Confidence 36899999999999999985 468888888877766654333332246777776666543 446789999976433332
Q ss_pred --------ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 293 --------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 293 --------~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
..+...++.++.++|||||++++..........+......++...+...+|.+...+
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (185)
T 3mti_A 103 ADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQ 167 (185)
T ss_dssp -------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEE
T ss_pred cchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEeh
Confidence 133356899999999999999997643221112222222333344445567766544
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=6e-13 Score=126.32 Aligned_cols=111 Identities=21% Similarity=0.268 Sum_probs=90.3
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d 295 (514)
..+|||||||+|.++..++ ..++++|+++. ++.+..+|...+++++++||+|+|.. ++|+ .+
T Consensus 68 ~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~-~~ 129 (215)
T 2zfu_A 68 SLVVADFGCGDCRLASSIR-NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCL-SLMG-TN 129 (215)
T ss_dssp TSCEEEETCTTCHHHHHCC-SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEES-CCCS-SC
T ss_pred CCeEEEECCcCCHHHHHhh-ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEeh-hccc-cC
Confidence 3579999999999999885 57889998875 35577888888898889999999988 4664 78
Q ss_pred hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 296 DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 296 ~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
...++.++.++|+|||+++++++..... ..+++.++++++||+++....
T Consensus 130 ~~~~l~~~~~~L~~gG~l~i~~~~~~~~------~~~~~~~~l~~~Gf~~~~~~~ 178 (215)
T 2zfu_A 130 IRDFLEEANRVLKPGGLLKVAEVSSRFE------DVRTFLRAVTKLGFKIVSKDL 178 (215)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEECGGGCS------CHHHHHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHHHHhCCCCeEEEEEEcCCCCC------CHHHHHHHHHHCCCEEEEEec
Confidence 8899999999999999999987543211 235788999999999887543
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.6e-13 Score=127.30 Aligned_cols=98 Identities=24% Similarity=0.369 Sum_probs=82.4
Q ss_pred CCeEEEECCCCchHHHHHhcC-CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
..+|||||||+|.++..+ +. .++++|+++. +++.++++..++.+..+|...+++++++||+|++.. +++|.+
T Consensus 37 ~~~vLdiG~G~G~~~~~l-~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~~~ 109 (211)
T 2gs9_A 37 GESLLEVGAGTGYWLRRL-PYPQKVGVEPSEA-----MLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFT-TLEFVE 109 (211)
T ss_dssp CSEEEEETCTTCHHHHHC-CCSEEEEECCCHH-----HHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEES-CTTTCS
T ss_pred CCeEEEECCCCCHhHHhC-CCCeEEEEeCCHH-----HHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcC-hhhhcC
Confidence 468999999999999988 54 6677766554 445666655677888899999999889999999887 688999
Q ss_pred chHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 295 RDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 295 d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
++..+++++.++|||||.++++++..
T Consensus 110 ~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 110 DVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99999999999999999999998764
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.1e-13 Score=133.12 Aligned_cols=135 Identities=19% Similarity=0.260 Sum_probs=98.3
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCC-CCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPY-PSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~-~~~sFDlV~~s~~~ 289 (514)
..+|||||||+|.++..++. ..++++|+++.++..+... +...+. ++.+..+|...+++ ++++||+|+|.. +
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~-~ 142 (298)
T 1ri5_A 65 GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVR-ARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF-S 142 (298)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHH-HHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES-C
T ss_pred CCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHhcCCCccEEEEECCccccccCCCCCcCEEEECc-h
Confidence 35899999999999888874 2678888777666555422 222232 46888899888888 578999999887 4
Q ss_pred ccc----ccchHHHHHHHHhhCCCCeEEEEEeCCCCC-----------------------CChh----------------
Q 010274 290 IDW----LQRDGILLLELDRLLRPGGYFVYSSPEAYA-----------------------HDPE---------------- 326 (514)
Q Consensus 290 l~~----~~d~~~lL~el~RvLrPGG~lvis~P~~~~-----------------------~~~e---------------- 326 (514)
+|| ..+...+|+++.++|||||++++++|.... ..+.
T Consensus 143 l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 222 (298)
T 1ri5_A 143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNN 222 (298)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSS
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhcC
Confidence 665 456678999999999999999998764210 0000
Q ss_pred ---HHHhHHHHHHHHHhcCcEEEEEecce
Q 010274 327 ---NRRIWNAMYDLLKSMCWKIVSKKDQT 352 (514)
Q Consensus 327 ---~~~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (514)
.....+++.++++++||+++..+...
T Consensus 223 ~~~~~~~~~~l~~ll~~aGf~~v~~~~~~ 251 (298)
T 1ri5_A 223 CIEYFVDFTRMVDGFKRLGLSLVERKGFI 251 (298)
T ss_dssp EEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred CcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence 00123689999999999999876654
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.7e-12 Score=123.35 Aligned_cols=100 Identities=19% Similarity=0.312 Sum_probs=78.7
Q ss_pred CeEEEECCCCchHHHHHhcC-CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc--
Q 010274 217 RNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL-- 293 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~-~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~-- 293 (514)
.+|||||||+|.++..++.. .++++|+++.++..+.. .+...+.++.+...|...++++ ++||+|++...+++|.
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~ 112 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQE-KAMETNRHVDFWVQDMRELELP-EPVDAITILCDSLNYLQT 112 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHH-HHHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGGGCCS
T ss_pred CeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHH-hhhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCchhhcCC
Confidence 58999999999999998863 67788877776655543 2333356788889998888876 7899999876457777
Q ss_pred -cchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 294 -QRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 294 -~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
.+...+++++.++|||||.+++..+
T Consensus 113 ~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 113 EADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 4456799999999999999998654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=7.5e-13 Score=133.58 Aligned_cols=100 Identities=11% Similarity=0.158 Sum_probs=77.2
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||||||+|.++..++. ..|+++|+++..+..+.. .+.+.+. .+.+..+|...++ ++||+|++.. ++
T Consensus 91 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~-~l 165 (318)
T 2fk8_A 91 GMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQ-VLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIE-AF 165 (318)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHTSCCSSCEEEEESCGGGCC---CCCSEEEEES-CG
T ss_pred cCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEECChHHCC---CCcCEEEEeC-hH
Confidence 46899999999999999884 467778777666554442 2222343 4788888887775 6899999888 68
Q ss_pred ccc--cchHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 291 DWL--QRDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 291 ~~~--~d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
+|+ ++...+++++.++|||||++++.++..
T Consensus 166 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 197 (318)
T 2fk8_A 166 EHFGHENYDDFFKRCFNIMPADGRMTVQSSVS 197 (318)
T ss_dssp GGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred HhcCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 888 577889999999999999999987643
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.38 E-value=4.6e-12 Score=120.66 Aligned_cols=126 Identities=10% Similarity=0.070 Sum_probs=94.2
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC--CCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp--~~~~sFDlV~~s~~~l 290 (514)
.+|||||||+|.++..++. ..++++|+++..+..+..+.......++.+..+|+..++ +++++||+|++... .
T Consensus 43 ~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~-~ 121 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS-D 121 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC-C
T ss_pred CeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC-C
Confidence 5799999999999998884 468899888887766664433332246888999988776 77789999998763 4
Q ss_pred cccc--------chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 291 DWLQ--------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 291 ~~~~--------d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
+|.. ....++.++.++|||||.+++.+... .....+.+++++.||..+....+
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~d 182 (214)
T 1yzh_A 122 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR--------GLFEYSLVSFSQYGMKLNGVWLD 182 (214)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH--------HHHHHHHHHHHHHTCEEEEEESS
T ss_pred CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH--------HHHHHHHHHHHHCCCeeeecccc
Confidence 3332 12579999999999999999976431 12456778888999988765543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=9.3e-13 Score=130.02 Aligned_cols=133 Identities=12% Similarity=0.043 Sum_probs=90.2
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHH-----------------HcCCCeEEEeecCCCCCCC
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFAL-----------------ERGIPSTLGVLGTKRLPYP 276 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~-----------------~rg~~~~~~~~d~~~lp~~ 276 (514)
..+|||+|||+|..+..|++ ..|+|+|+++.++..+..+... ..+.++.+.++|+..++++
T Consensus 69 ~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~ 148 (252)
T 2gb4_A 69 GLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRA 148 (252)
T ss_dssp SCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGG
T ss_pred CCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCcc
Confidence 35899999999999999985 3577777777666544322110 0125688999999998876
Q ss_pred C-CCceEEEecccccccccc--hHHHHHHHHhhCCCCeEEEEEeCC---CCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 277 S-RSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPE---AYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 277 ~-~sFDlV~~s~~~l~~~~d--~~~lL~el~RvLrPGG~lvis~P~---~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+ ++||+|++.. ++++++. ...+++++.++|||||+|++.+.. .....+...-.-+++..+++. +|+++..+.
T Consensus 149 ~~~~FD~V~~~~-~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 149 NIGKFDRIWDRG-ALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQCLEE 226 (252)
T ss_dssp CCCCEEEEEESS-STTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEEEEE
T ss_pred cCCCEEEEEEhh-hhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEEEec
Confidence 4 7999999876 4666643 356999999999999999754311 000000000112577888887 598877654
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=123.63 Aligned_cols=98 Identities=20% Similarity=0.400 Sum_probs=78.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC---CCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg---~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
...+|||||||+|.++..|+.. .++++|+++. +++.++++. .++.+..+|...++ ++++||+|+|+. +
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~-~ 123 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPR-----AIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAE-V 123 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHH-----HHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEES-C
T ss_pred CCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHH-----HHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEcc-H
Confidence 3468999999999999999864 5666666554 445555442 36788999988888 678999999987 6
Q ss_pred cccccch---HHHHHHHHhhCCCCeEEEEEeCC
Q 010274 290 IDWLQRD---GILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 290 l~~~~d~---~~lL~el~RvLrPGG~lvis~P~ 319 (514)
++|++++ ..++.++.++|||||+++++++.
T Consensus 124 l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 124 LYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred HHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 8888876 46799999999999999998753
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=126.85 Aligned_cols=165 Identities=10% Similarity=0.062 Sum_probs=108.1
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCC--CCCCCceEEEeccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP--YPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp--~~~~sFDlV~~s~~ 288 (514)
..+|||+|||+|.++..++.. .|+++|+++..+..+..+.. ..+. ++.+..+|+..++ +++++||+|+++..
T Consensus 50 ~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~-~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP 128 (259)
T 3lpm_A 50 KGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVA-YNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP 128 (259)
T ss_dssp CCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHH-HTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred CCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHH-HCCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence 468999999999999999853 67888888877766654433 3343 4788888887765 55789999998632
Q ss_pred cccc----c---------------cchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 289 RIDW----L---------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 289 ~l~~----~---------------~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
.... . .+...++.++.++|||||++++..+... ..++...+++.||......
T Consensus 129 y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------~~~~~~~l~~~~~~~~~~~ 199 (259)
T 3lpm_A 129 YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPER---------LLDIIDIMRKYRLEPKRIQ 199 (259)
T ss_dssp C-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTT---------HHHHHHHHHHTTEEEEEEE
T ss_pred CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHH---------HHHHHHHHHHCCCceEEEE
Confidence 1111 1 2235699999999999999999775432 4567788899999877654
Q ss_pred cceEEEeccCcchhhhccCCCC-----CCCCcCC-CCCCchhhhhcc
Q 010274 350 DQTVIWAKPISNSCYLKRVPGS-----RPPLCSS-DDDPDVTWNVLM 390 (514)
Q Consensus 350 ~~~~iw~Kp~~~~c~~~r~~~~-----~P~lC~~-~~~~~~~wy~~L 390 (514)
.......++.+......++.+. .|+|... ++..++.+|..|
T Consensus 200 ~v~~~~~~~~~~~l~~~~k~~~~~~~~~~~l~i~~~~g~yt~~~~~~ 246 (259)
T 3lpm_A 200 FVHPRSDREANTVLVEGIKDGKPGVKYVPPVIVYDELGEYTPVIKEI 246 (259)
T ss_dssp EEESSTTSCCSEEEEEEEETCCSCCEEEEEEECBCTTSSBCHHHHHH
T ss_pred EeecCCCCCcEEEEEEEEeCCCCCCeecCCEEEECCCCCcCHHHHHH
Confidence 4322222333333334444322 2445543 345677777655
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-12 Score=130.39 Aligned_cols=99 Identities=12% Similarity=0.188 Sum_probs=80.0
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHH--cCCCeEEEeecCCCCCCCC------CCceE
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALE--RGIPSTLGVLGTKRLPYPS------RSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~--rg~~~~~~~~d~~~lp~~~------~sFDl 282 (514)
..+|||||||+|.++..|++ ..|+++|+++..+..+....... ...++.+.++|+..+++++ ++||+
T Consensus 37 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 116 (299)
T 3g5t_A 37 RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDM 116 (299)
T ss_dssp CSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCeeE
Confidence 46899999999999999983 35778877776665554332221 1457899999999988877 89999
Q ss_pred EEecccccccccchHHHHHHHHhhCCCCeEEEEE
Q 010274 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 283 V~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis 316 (514)
|+|+. ++||+ +...++.++.++|||||.|++.
T Consensus 117 V~~~~-~l~~~-~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 117 ITAVE-CAHWF-DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp EEEES-CGGGS-CHHHHHHHHHHHEEEEEEEEEE
T ss_pred EeHhh-HHHHh-CHHHHHHHHHHhcCCCcEEEEE
Confidence 99988 58888 9999999999999999999983
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.37 E-value=8e-13 Score=130.42 Aligned_cols=136 Identities=13% Similarity=0.099 Sum_probs=90.3
Q ss_pred CCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHc-C----------------------------CC
Q 010274 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER-G----------------------------IP 262 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~r-g----------------------------~~ 262 (514)
+..+|||||||+|.++..++. ..|+++|+++.++..+......+. . ..
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA 134 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence 346899999999988776653 258899888887766543221100 0 01
Q ss_pred eE-EEeecCCC-CCC---CCCCceEEEecccccccc----cchHHHHHHHHhhCCCCeEEEEEeCCC---CCCChh----
Q 010274 263 ST-LGVLGTKR-LPY---PSRSFELAHCSRCRIDWL----QRDGILLLELDRLLRPGGYFVYSSPEA---YAHDPE---- 326 (514)
Q Consensus 263 ~~-~~~~d~~~-lp~---~~~sFDlV~~s~~~l~~~----~d~~~lL~el~RvLrPGG~lvis~P~~---~~~~~e---- 326 (514)
+. +.++|+.. .|+ ..++||+|+|+. ++||+ ++...+++++.|+|||||+|++++... +.....
T Consensus 135 i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~-~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~ 213 (263)
T 2a14_A 135 VKRVLKCDVHLGNPLAPAVLPLADCVLTLL-AMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC 213 (263)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEES-CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred hheEEeccccCCCCCCccccCCCCEeeehH-HHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeec
Confidence 22 67778766 343 257899999998 46664 455679999999999999999986321 100000
Q ss_pred HHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 327 NRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 327 ~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
..-.-+++.++++++||+++.....
T Consensus 214 ~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 214 VALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp CCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred cccCHHHHHHHHHHCCCEEEEEeec
Confidence 0002357889999999998876543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-12 Score=131.78 Aligned_cols=134 Identities=14% Similarity=0.210 Sum_probs=90.4
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcC-------------------------------
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERG------------------------------- 260 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg------------------------------- 260 (514)
..+|||||||+|.++..|+. ..|+|+|+++.++..+.........
T Consensus 47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (292)
T 3g07_A 47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCF 126 (292)
T ss_dssp TSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC------------------------------------
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccc
Confidence 46899999999999999885 3677887777666544422111000
Q ss_pred ---------------------------CCeEEEeecCCCCC-----CCCCCceEEEeccccccccc------chHHHHHH
Q 010274 261 ---------------------------IPSTLGVLGTKRLP-----YPSRSFELAHCSRCRIDWLQ------RDGILLLE 302 (514)
Q Consensus 261 ---------------------------~~~~~~~~d~~~lp-----~~~~sFDlV~~s~~~l~~~~------d~~~lL~e 302 (514)
.++.+..+|....+ +.+++||+|+|.. +++|+. +...+|++
T Consensus 127 p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~-vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 127 PASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLS-LTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ---------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEES-CHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEECh-HHHHhhhcCCHHHHHHHHHH
Confidence 25778888866543 5678999999988 576653 55779999
Q ss_pred HHhhCCCCeEEEEEeCCCC--C---CC-hhHHHhH-------HHHHHHHHh--cCcEEEEEec
Q 010274 303 LDRLLRPGGYFVYSSPEAY--A---HD-PENRRIW-------NAMYDLLKS--MCWKIVSKKD 350 (514)
Q Consensus 303 l~RvLrPGG~lvis~P~~~--~---~~-~e~~~~~-------~~l~~ll~~--~Gf~~v~~~~ 350 (514)
+.++|||||+|++...+.. . .. ......+ +++..++.+ +||+.++...
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~ 268 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVA 268 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC-
T ss_pred HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEec
Confidence 9999999999999765321 1 11 1111122 367788888 9997766544
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-12 Score=124.87 Aligned_cols=133 Identities=11% Similarity=0.129 Sum_probs=94.3
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChh------hhhHHHHHHHHHcC--CCeEEEeec---CCCCCCCCCC
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPN------DVHENQIQFALERG--IPSTLGVLG---TKRLPYPSRS 279 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~------dis~a~~~~A~~rg--~~~~~~~~d---~~~lp~~~~s 279 (514)
..+|||||||+|.++..++. ..|+++|+++. .+..+. +.....+ .++.+..+| ...+|+++++
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 122 (275)
T 3bkx_A 44 GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAW-NHLLAGPLGDRLTVHFNTNLSDDLGPIADQH 122 (275)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHH-HHHHTSTTGGGEEEECSCCTTTCCGGGTTCC
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHH-HHHHhcCCCCceEEEECChhhhccCCCCCCC
Confidence 46899999999999998874 46889999876 555444 3333333 257788887 5566778889
Q ss_pred ceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhH--------------------------HHhHHH
Q 010274 280 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN--------------------------RRIWNA 333 (514)
Q Consensus 280 FDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~--------------------------~~~~~~ 333 (514)
||+|+|.. +++|.+++..+++.+.++++|||++++.+.......... ...-.+
T Consensus 123 fD~v~~~~-~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 201 (275)
T 3bkx_A 123 FDRVVLAH-SLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITPDT 201 (275)
T ss_dssp CSEEEEES-CGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCCCCHHH
T ss_pred EEEEEEcc-chhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccccccccccCCHHH
Confidence 99999888 688888888878888888888999999764321111000 001247
Q ss_pred HHHHHHhcCcEEEEEec
Q 010274 334 MYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 334 l~~ll~~~Gf~~v~~~~ 350 (514)
+.++++++||+++..+.
T Consensus 202 l~~~l~~aGf~~~~~~~ 218 (275)
T 3bkx_A 202 LAQIAHDNTWTYTAGTI 218 (275)
T ss_dssp HHHHHHHHTCEEEECCC
T ss_pred HHHHHHHCCCeeEEEEE
Confidence 78889999998875443
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-12 Score=123.32 Aligned_cols=101 Identities=17% Similarity=0.258 Sum_probs=79.8
Q ss_pred CCeEEEECCCCchHH-HHHh--cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 216 IRNVLDVGCGVASFG-AYLL--SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a-~~La--~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
..+|||+|||+|.++ ..++ +..++++|+++.++..+.. .+...+.++.+..+|...+++++++||+|++.. +++|
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~ 101 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAEN-FSRENNFKLNISKGDIRKLPFKDESMSFVYSYG-TIFH 101 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHH-HHHHHTCCCCEEECCTTSCCSCTTCEEEEEECS-CGGG
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHHhcCCceEEEECchhhCCCCCCceeEEEEcC-hHHh
Confidence 358999999999874 4444 3467888888877765553 333345678888999999998889999999887 5777
Q ss_pred c--cchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 293 L--QRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 293 ~--~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
. .+...+++++.++|||||++++..+
T Consensus 102 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 102 MRKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 7 5678899999999999999999764
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-12 Score=136.68 Aligned_cols=131 Identities=18% Similarity=0.171 Sum_probs=93.5
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc-
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW- 292 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~- 292 (514)
..+|||+|||+|.++..++. ..|+++|+++.++..+.. .+...+..+.+...|....+.++++||+|+|+. .+|+
T Consensus 234 ~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~-n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~np-p~~~~ 311 (381)
T 3dmg_A 234 GRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQK-GLEANALKAQALHSDVDEALTEEARFDIIVTNP-PFHVG 311 (381)
T ss_dssp TCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHH-HHHHTTCCCEEEECSTTTTSCTTCCEEEEEECC-CCCTT
T ss_pred CCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEcchhhccccCCCeEEEEECC-chhhc
Confidence 45899999999999999985 467788887776665553 334446678899999888877778999999876 4565
Q ss_pred ----ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 293 ----LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 293 ----~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
..+...++.++.++|||||.++++.+....+.......+..++.+ ++.||+++...
T Consensus 312 ~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~~v~~l-~~~gF~Vl~a~ 371 (381)
T 3dmg_A 312 GAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFGAFQTL-KVAEYKVLFAE 371 (381)
T ss_dssp CSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHSCCEEE-EESSSEEEEEE
T ss_pred ccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhccEEEE-eCCCEEEEEEE
Confidence 345578999999999999999998876543222222223333333 55666665543
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=7.7e-13 Score=131.51 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHc----CCCeEEE
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----GIPSTLG 266 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~r----g~~~~~~ 266 (514)
..+.+.+.+.+... ...+|||||||+|.++..|+.. .|+++|+++.++..+..+....+ ..++.+.
T Consensus 43 ~~~~~~l~~~l~~~--------~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 114 (293)
T 3thr_A 43 AEYKAWLLGLLRQH--------GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIE 114 (293)
T ss_dssp HHHHHHHHHHHHHT--------TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEE
T ss_pred HHHHHHHHHHhccc--------CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEe
Confidence 45555666665532 2358999999999999999864 57777777766655543221111 1246677
Q ss_pred eecCCCCC---CCCCCceEEEecccccccccc-------hHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 267 VLGTKRLP---YPSRSFELAHCSRCRIDWLQR-------DGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 267 ~~d~~~lp---~~~~sFDlV~~s~~~l~~~~d-------~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
.++...++ +++++||+|+|...+++|+.+ ...+++++.++|||||+|+++.|.
T Consensus 115 ~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 115 EANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp ECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 88887777 788999999997236888888 788999999999999999998764
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=126.71 Aligned_cols=144 Identities=15% Similarity=0.129 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEee
Q 010274 192 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVL 268 (514)
Q Consensus 192 a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~ 268 (514)
...+.+.+...+. ....+|||||||+|.++..|+.. .|+++|+++.++..+.. .+...+.++.+..+
T Consensus 46 ~~~~~~~l~~~~~---------~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~v~~~~~ 115 (236)
T 1zx0_A 46 ETPYMHALAAAAS---------SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQTHKVIPLKG 115 (236)
T ss_dssp GHHHHHHHHHHHT---------TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHH-HGGGCSSEEEEEES
T ss_pred HHHHHHHHHhhcC---------CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHH-HHHhcCCCeEEEec
Confidence 3455555555443 12358999999999999999853 56777776665544432 22223456788888
Q ss_pred cCCCC--CCCCCCceEEEe-cccc-cc--cccchHHHHHHHHhhCCCCeEEEEEeCCCC-----CCChhHHHhH-HHHHH
Q 010274 269 GTKRL--PYPSRSFELAHC-SRCR-ID--WLQRDGILLLELDRLLRPGGYFVYSSPEAY-----AHDPENRRIW-NAMYD 336 (514)
Q Consensus 269 d~~~l--p~~~~sFDlV~~-s~~~-l~--~~~d~~~lL~el~RvLrPGG~lvis~P~~~-----~~~~e~~~~~-~~l~~ 336 (514)
|...+ ++++++||+|++ .+.. .+ +..+...++.++.|+|||||+|++.....+ .........+ +....
T Consensus 116 d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (236)
T 1zx0_A 116 LWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVP 195 (236)
T ss_dssp CHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHH
T ss_pred CHHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHH
Confidence 88877 888899999998 4421 11 122334689999999999999998653211 0001111112 34456
Q ss_pred HHHhcCcEE
Q 010274 337 LLKSMCWKI 345 (514)
Q Consensus 337 ll~~~Gf~~ 345 (514)
.+.++||..
T Consensus 196 ~l~~aGF~~ 204 (236)
T 1zx0_A 196 ALLEAGFRR 204 (236)
T ss_dssp HHHHTTCCG
T ss_pred HHHHCCCCC
Confidence 788899974
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-12 Score=128.29 Aligned_cols=99 Identities=20% Similarity=0.414 Sum_probs=79.6
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..+|||||||+|.++..++.. .++++| +++.+++.++++... .+..+|...+++++++||+|++...++|+.
T Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD-----~s~~~l~~a~~~~~~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~ 128 (260)
T 2avn_A 55 PCRVLDLGGGTGKWSLFLQERGFEVVLVD-----PSKEMLEVAREKGVK-NVVEAKAEDLPFPSGAFEAVLALGDVLSYV 128 (260)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTCEEEEEE-----SCHHHHHHHHHHTCS-CEEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred CCeEEEeCCCcCHHHHHHHHcCCeEEEEe-----CCHHHHHHHHhhcCC-CEEECcHHHCCCCCCCEEEEEEcchhhhcc
Confidence 358999999999999999864 455555 455555666666443 377888888998889999999887666766
Q ss_pred cchHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 294 QRDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
++...+|+++.++|||||.++++.+..
T Consensus 129 ~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 129 ENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred ccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 888999999999999999999988754
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.3e-12 Score=118.99 Aligned_cols=119 Identities=18% Similarity=0.147 Sum_probs=89.0
Q ss_pred CeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCC-eEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~~-~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
.+|||||||+|.++..++.. .++++|+++..+..+..+ +...+.. +.+...|.... .+++||+|+++. .+++
T Consensus 62 ~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~v~~~~~d~~~~--~~~~fD~i~~~~-~~~~ 137 (205)
T 3grz_A 62 LTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEEN-AALNGIYDIALQKTSLLAD--VDGKFDLIVANI-LAEI 137 (205)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHTTCCCCEEEESSTTTT--CCSCEEEEEEES-CHHH
T ss_pred CEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCceEEEecccccc--CCCCceEEEECC-cHHH
Confidence 58999999999999998853 578888887766555533 3333443 78888877554 357999999876 3444
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
...+++++.++|||||++++++.... ..+.+.+++++.||+.+....
T Consensus 138 ---~~~~l~~~~~~L~~gG~l~~~~~~~~--------~~~~~~~~~~~~Gf~~~~~~~ 184 (205)
T 3grz_A 138 ---LLDLIPQLDSHLNEDGQVIFSGIDYL--------QLPKIEQALAENSFQIDLKMR 184 (205)
T ss_dssp ---HHHHGGGSGGGEEEEEEEEEEEEEGG--------GHHHHHHHHHHTTEEEEEEEE
T ss_pred ---HHHHHHHHHHhcCCCCEEEEEecCcc--------cHHHHHHHHHHcCCceEEeec
Confidence 36789999999999999999753321 245778899999999887554
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.9e-12 Score=120.55 Aligned_cols=123 Identities=10% Similarity=0.143 Sum_probs=90.5
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCCC--CCCCCceEEEecccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLP--YPSRSFELAHCSRCR 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~lp--~~~~sFDlV~~s~~~ 289 (514)
.+|||||||+|.++..|+. ..++|+|+++.++..+..+ +.+.+ .++.+..+|+..++ +++++||.|++.+.
T Consensus 40 ~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~-~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~- 117 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQK-VKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS- 117 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH-HHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC-
T ss_pred ceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHH-HHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC-
Confidence 5799999999999999884 4688898888777666533 33344 36888889987776 67789999987652
Q ss_pred cccccc--------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 290 IDWLQR--------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 290 l~~~~d--------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
.+|... ...++.++.++|||||.|++.+... ...+.+...+++.||......
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~--------~~~~~~~~~~~~~g~~~~~~~ 177 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR--------GLFEYSLKSFSEYGLLLTYVS 177 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH--------HHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCcccccc
Confidence 333321 2579999999999999999976431 123456677888899876543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-12 Score=123.04 Aligned_cols=115 Identities=20% Similarity=0.306 Sum_probs=88.6
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecC-CCCCCC-CCCceEEEeccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLPYP-SRSFELAHCSRCRIDW 292 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~-~~lp~~-~~sFDlV~~s~~~l~~ 292 (514)
.+|||||||+|.++..|+.. .|+++| +++.+++.++++..++.+..+|. ..+|++ +++||+|+++
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~~~~v~~vD-----~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------ 118 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQAARWAAYD-----FSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------ 118 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGGSSEEEEEE-----SCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------
T ss_pred CeEEEeCCCCCHHHHHHHHcCCEEEEEE-----CCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------
Confidence 58999999999999999864 455554 55556677777777789999998 678888 8999999976
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecce
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQT 352 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (514)
.+...++.++.++|||||.++...... ....+.+.++++||..+......
T Consensus 119 -~~~~~~l~~~~~~LkpgG~l~~~~~~~---------~~~~~~~~l~~~Gf~~~~~~~~~ 168 (226)
T 3m33_A 119 -RGPTSVILRLPELAAPDAHFLYVGPRL---------NVPEVPERLAAVGWDIVAEDHVS 168 (226)
T ss_dssp -SCCSGGGGGHHHHEEEEEEEEEEESSS---------CCTHHHHHHHHTTCEEEEEEEEE
T ss_pred -CCHHHHHHHHHHHcCCCcEEEEeCCcC---------CHHHHHHHHHHCCCeEEEEEeee
Confidence 345678999999999999999322211 12367788999999988766554
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.6e-11 Score=112.58 Aligned_cols=117 Identities=14% Similarity=0.009 Sum_probs=87.7
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+|||||||+|.++..++. ..|+++|+++..+..+..+.......++.+..+|........++||+|++... ++
T Consensus 41 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~-~~ 119 (204)
T 3e05_A 41 DLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGS-GG 119 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCC-TT
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCC-Cc
Confidence 36899999999999999884 45888888887776665443333224578888887554434468999998763 33
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcE
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~ 344 (514)
+...++.++.++|||||++++..+.. .....+.+.+++.||.
T Consensus 120 ---~~~~~l~~~~~~LkpgG~l~~~~~~~--------~~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 120 ---MLEEIIDAVDRRLKSEGVIVLNAVTL--------DTLTKAVEFLEDHGYM 161 (204)
T ss_dssp ---CHHHHHHHHHHHCCTTCEEEEEECBH--------HHHHHHHHHHHHTTCE
T ss_pred ---CHHHHHHHHHHhcCCCeEEEEEeccc--------ccHHHHHHHHHHCCCc
Confidence 66789999999999999999976432 2356778899999993
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.4e-12 Score=123.84 Aligned_cols=133 Identities=14% Similarity=0.221 Sum_probs=93.7
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..+|||||||+|.++..|+. ..|+++|+++..+..+. +.+...+.++.+..+|+..+++ +++||+|+|+. +++|+
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~-~~~~~ 197 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLN-ETKEKENLNISTALYDINAANI-QENYDFIVSTV-VFMFL 197 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECS-SGGGS
T ss_pred CCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHHHcCCceEEEEeccccccc-cCCccEEEEcc-chhhC
Confidence 35899999999999999985 36788888877766555 3344445688999999888887 68999999888 67777
Q ss_pred cch--HHHHHHHHhhCCCCeEEEEEeCCC---CCCCh--hHHHhHHHHHHHHHhcCcEEEEEecceE
Q 010274 294 QRD--GILLLELDRLLRPGGYFVYSSPEA---YAHDP--ENRRIWNAMYDLLKSMCWKIVSKKDQTV 353 (514)
Q Consensus 294 ~d~--~~lL~el~RvLrPGG~lvis~P~~---~~~~~--e~~~~~~~l~~ll~~~Gf~~v~~~~~~~ 353 (514)
.+. ..++.++.++|||||++++..... +.... .....-.++.++++. |+++..+....
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~ 262 (286)
T 3m70_A 198 NRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYNENMG 262 (286)
T ss_dssp CGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEECCEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEEccCC
Confidence 544 589999999999999988754311 00000 000001355666655 88888765543
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-12 Score=131.57 Aligned_cols=102 Identities=11% Similarity=0.119 Sum_probs=74.1
Q ss_pred CCeEEEECCCCchHHHHHh-c--CCCccccCChhhhhHHHHHHHHHcCCC-------eEEEeecC------CCC--CCCC
Q 010274 216 IRNVLDVGCGVASFGAYLL-S--HDIIAMSLAPNDVHENQIQFALERGIP-------STLGVLGT------KRL--PYPS 277 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La-~--~~V~gvdis~~dis~a~~~~A~~rg~~-------~~~~~~d~------~~l--p~~~ 277 (514)
..+|||||||+|..+..++ . ..|+|+|+++.++..+.... .+.+.. +.+.+.+. ..+ ++++
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~-~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERY-NKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHH-HHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHH-HhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 4689999999997655444 2 36889988888887776433 333322 44656655 222 3567
Q ss_pred CCceEEEecccccccc---cchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 278 RSFELAHCSRCRIDWL---QRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~---~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
++||+|+|.. ++||. .+...+|+++.|+|||||+|++++|.
T Consensus 128 ~~FD~V~~~~-~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 128 GKFNIIDWQF-AIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SCEEEEEEES-CGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCeeEEEECc-hHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 8999999988 57764 34578999999999999999998875
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=3.3e-12 Score=127.24 Aligned_cols=135 Identities=15% Similarity=0.135 Sum_probs=88.9
Q ss_pred CCeEEEECCCCchHHHHHh---cCCCccccCChhhhhHHHHHHHH----------------HcCC--------------C
Q 010274 216 IRNVLDVGCGVASFGAYLL---SHDIIAMSLAPNDVHENQIQFAL----------------ERGI--------------P 262 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La---~~~V~gvdis~~dis~a~~~~A~----------------~rg~--------------~ 262 (514)
..+|||||||+|.++..++ ...|+++|+++.++..+...... ..+. .
T Consensus 72 ~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 151 (289)
T 2g72_A 72 GRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARV 151 (289)
T ss_dssp CSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHE
T ss_pred CCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhh
Confidence 4689999999999654443 24688888877766544321110 0110 1
Q ss_pred eEEEeecCCC-CCC-----CCCCceEEEeccccccc----ccchHHHHHHHHhhCCCCeEEEEEeCC--C-CCCChh---
Q 010274 263 STLGVLGTKR-LPY-----PSRSFELAHCSRCRIDW----LQRDGILLLELDRLLRPGGYFVYSSPE--A-YAHDPE--- 326 (514)
Q Consensus 263 ~~~~~~d~~~-lp~-----~~~sFDlV~~s~~~l~~----~~d~~~lL~el~RvLrPGG~lvis~P~--~-~~~~~e--- 326 (514)
..+..+|+.. +|+ ++++||+|+|+. +++| .++...+|+++.|+|||||+|+++... . +.....
T Consensus 152 ~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~ 230 (289)
T 2g72_A 152 KRVLPIDVHQPQPLGAGSPAPLPADALVSAF-CLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLT 230 (289)
T ss_dssp EEEECCCTTSSSTTCSSCSSCSSEEEEEEES-CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEE
T ss_pred ceEEecccCCCCCccccccCCCCCCEEEehh-hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeee
Confidence 3455667766 654 346799999988 5888 667788999999999999999986421 1 100000
Q ss_pred -HHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 327 -NRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 327 -~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
....-+++.++++++||+++.....
T Consensus 231 ~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 231 VVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred eccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 0012357889999999998876643
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.4e-12 Score=127.93 Aligned_cols=136 Identities=19% Similarity=0.326 Sum_probs=98.4
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHH-------cCCCeEEEeecCCCCC----CC--CCC
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALE-------RGIPSTLGVLGTKRLP----YP--SRS 279 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~-------rg~~~~~~~~d~~~lp----~~--~~s 279 (514)
..+|||||||+|.++..++. ..++++|+++.++..+....... ...++.+.++|...++ ++ +++
T Consensus 35 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 114 (313)
T 3bgv_A 35 DITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMC 114 (313)
T ss_dssp CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTCC
T ss_pred CCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCCC
Confidence 35899999999999998884 35778888777665555433322 1235788889988776 53 458
Q ss_pred ceEEEecccccccc-c---chHHHHHHHHhhCCCCeEEEEEeCCC--------------CCC--------C---------
Q 010274 280 FELAHCSRCRIDWL-Q---RDGILLLELDRLLRPGGYFVYSSPEA--------------YAH--------D--------- 324 (514)
Q Consensus 280 FDlV~~s~~~l~~~-~---d~~~lL~el~RvLrPGG~lvis~P~~--------------~~~--------~--------- 324 (514)
||+|+|+. ++||. . +...+|.++.++|||||+|+++++.. +.. .
T Consensus 115 fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 193 (313)
T 3bgv_A 115 FDICSCQF-VCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGC 193 (313)
T ss_dssp EEEEEEET-CGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSSCC
T ss_pred EEEEEEec-chhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCccc
Confidence 99999988 68887 3 34689999999999999999987632 000 0
Q ss_pred ------------hhHHHhHHHHHHHHHhcCcEEEEEecce
Q 010274 325 ------------PENRRIWNAMYDLLKSMCWKIVSKKDQT 352 (514)
Q Consensus 325 ------------~e~~~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (514)
++..-.++.+.++++++||+++......
T Consensus 194 ~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f~ 233 (313)
T 3bgv_A 194 KYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFL 233 (313)
T ss_dssp EEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEEHH
T ss_pred eEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecCHH
Confidence 0001235789999999999999876543
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-12 Score=127.53 Aligned_cols=135 Identities=15% Similarity=0.148 Sum_probs=92.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC------------------------------
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI------------------------------ 261 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~------------------------------ 261 (514)
+..+|||||||+|.++..++.. .|+++|+++.++..+.... ...+.
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWL-KKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHH-TTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHH-hcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 3468999999999999888753 5777777766654443221 11110
Q ss_pred Ce-EEEeecCCCCC-CCC---CCceEEEecccccc----cccchHHHHHHHHhhCCCCeEEEEEeCCCCCC---Chh---
Q 010274 262 PS-TLGVLGTKRLP-YPS---RSFELAHCSRCRID----WLQRDGILLLELDRLLRPGGYFVYSSPEAYAH---DPE--- 326 (514)
Q Consensus 262 ~~-~~~~~d~~~lp-~~~---~sFDlV~~s~~~l~----~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~---~~e--- 326 (514)
.+ .+..+|+...+ +++ ++||+|+|+. +++ +..+...++.++.++|||||+|++.++..... ...
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~ 213 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTL-CLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFS 213 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEES-CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhh-hhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccc
Confidence 15 77888877653 355 7999999988 566 55567889999999999999999977421100 000
Q ss_pred -HHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 327 -NRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 327 -~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
....-+++.++++++||+++.....
T Consensus 214 ~~~~~~~~~~~~l~~aGf~~~~~~~~ 239 (265)
T 2i62_A 214 SLPLGWETVRDAVEEAGYTIEQFEVI 239 (265)
T ss_dssp CCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred ccccCHHHHHHHHHHCCCEEEEEEEe
Confidence 0001247889999999999876654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.30 E-value=9e-12 Score=120.97 Aligned_cols=123 Identities=11% Similarity=0.084 Sum_probs=91.1
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCC---CCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYP---SRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~---~~sFDlV~~s~ 287 (514)
..+|||||||+|.++..|+. ..|+++|+++.++..+..+ +...+. ++.+..+|+.++++. +++||+|+|..
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~ 149 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKL-SEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHH-HHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence 36899999999999988872 4688888888777665533 333344 688888888777754 57899999765
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
..+...++.++.++|||||++++...... . ....++.+.++..||.+.....
T Consensus 150 -----~~~~~~~l~~~~~~LkpgG~l~~~~g~~~---~---~~~~~~~~~l~~~g~~~~~~~~ 201 (240)
T 1xdz_A 150 -----VARLSVLSELCLPLVKKNGLFVALKAASA---E---EELNAGKKAITTLGGELENIHS 201 (240)
T ss_dssp -----CSCHHHHHHHHGGGEEEEEEEEEEECC-C---H---HHHHHHHHHHHHTTEEEEEEEE
T ss_pred -----cCCHHHHHHHHHHhcCCCCEEEEEeCCCc---h---HHHHHHHHHHHHcCCeEeEEEE
Confidence 35678899999999999999998643221 1 2245677888999998876543
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.29 E-value=4.6e-11 Score=110.02 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=90.5
Q ss_pred CceeecCCCCCCCCcc-HHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHH
Q 010274 176 GEKINFPGGGTHFHDG-ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQ 252 (514)
Q Consensus 176 g~~~~Fpggg~~F~~g-a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~ 252 (514)
+..+.|......|... .+...+.+.+.+.. ....+|||+|||+|.++..++. ..++++|+++..+..+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~ 91 (194)
T 1dus_A 20 GKKLKFKTDSGVFSYGKVDKGTKILVENVVV--------DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAK 91 (194)
T ss_dssp TEEEEEEEETTSTTTTSCCHHHHHHHHHCCC--------CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHH
T ss_pred CCceEEEeCCCcCCccccchHHHHHHHHccc--------CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHH
Confidence 3444553333334333 23444555555542 1346899999999999999885 46778887777665555
Q ss_pred HHHHHHcCCC---eEEEeecCCCCCCCCCCceEEEeccccccc-ccchHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 253 IQFALERGIP---STLGVLGTKRLPYPSRSFELAHCSRCRIDW-LQRDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 253 ~~~A~~rg~~---~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~-~~d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
.... ..+.. +.+...|... ++++++||+|+++. .+++ ..+...+++++.++|+|||.+++..+..
T Consensus 92 ~~~~-~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~-~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 92 ENIK-LNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNP-PIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp HHHH-HTTCTTSCEEEEECSTTT-TCTTSCEEEEEECC-CSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred HHHH-HcCCCccceEEEECchhc-ccccCCceEEEECC-CcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 3333 33433 7888888766 34567899999876 4555 3556789999999999999999988654
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.4e-12 Score=116.05 Aligned_cols=136 Identities=15% Similarity=0.070 Sum_probs=92.3
Q ss_pred CceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHH
Q 010274 176 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQ 252 (514)
Q Consensus 176 g~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~ 252 (514)
|..+..|. ..+....+...+.+.+.+.... .....+|||+|||+|.++..++. ..|+++|+++.++..+.
T Consensus 12 g~~l~~~~--~~~rp~~~~~~~~l~~~l~~~~-----~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~ 84 (189)
T 3p9n_A 12 GRRIAVPP--RGTRPTTDRVRESLFNIVTARR-----DLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIA 84 (189)
T ss_dssp TCEEECCS--CCC---CHHHHHHHHHHHHHHS-----CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred CcEecCCC--CCCccCcHHHHHHHHHHHHhcc-----CCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHH
Confidence 33445554 3344455566666665554210 02336899999999999997764 25889999888777666
Q ss_pred HHHHHHcCCCeEEEeecCCCCC--CCCCCceEEEecccccccc-cchHHHHHHHHh--hCCCCeEEEEEeCC
Q 010274 253 IQFALERGIPSTLGVLGTKRLP--YPSRSFELAHCSRCRIDWL-QRDGILLLELDR--LLRPGGYFVYSSPE 319 (514)
Q Consensus 253 ~~~A~~rg~~~~~~~~d~~~lp--~~~~sFDlV~~s~~~l~~~-~d~~~lL~el~R--vLrPGG~lvis~P~ 319 (514)
.+.......++.+..+|+..++ +++++||+|++... .++. .+...++.++.+ +|+|||.+++..+.
T Consensus 85 ~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p-~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 85 RNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP-YNVDSADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp HHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC-TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred HHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC-CCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 4443332236888888876653 44689999998763 5543 567889999999 99999999998754
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-11 Score=116.51 Aligned_cols=125 Identities=14% Similarity=0.059 Sum_probs=91.0
Q ss_pred CCeEEEECCC-CchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCC-CCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCG-VASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~l-p~~~~sFDlV~~s~~~l 290 (514)
..+|||+||| +|.++..++. ..|+++|+++..+..+.. .+...+.++.+..+|...+ ++++++||+|+++.. .
T Consensus 56 ~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp-~ 133 (230)
T 3evz_A 56 GEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARR-NIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP-Y 133 (230)
T ss_dssp SCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHH-HHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC-C
T ss_pred CCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC-C
Confidence 4689999999 9999998874 468889888877766653 3444455788888886433 456689999998742 2
Q ss_pred cccc-------------------chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 291 DWLQ-------------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 291 ~~~~-------------------d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
++.. ....++.++.++|||||++++..+... ....++.+++++.||.+...+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------~~~~~~~~~l~~~g~~~~~~~ 204 (230)
T 3evz_A 134 YDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-------KLLNVIKERGIKLGYSVKDIK 204 (230)
T ss_dssp C---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-------HHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-------hHHHHHHHHHHHcCCceEEEE
Confidence 2211 136799999999999999999765421 234677889999999766543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=120.01 Aligned_cols=102 Identities=20% Similarity=0.304 Sum_probs=79.4
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..+|||+|||+|.++..|+. ..|+++|+++.++..+.. .+...+.++.+..+|...++++ ++||+|+|..+.+++.
T Consensus 42 ~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~ 119 (252)
T 1wzn_A 42 VRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARR-KAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYF 119 (252)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGS
T ss_pred CCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhcC
Confidence 46899999999999999985 357788877776655553 3334466788999998888876 6899999875455554
Q ss_pred c--chHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 294 Q--RDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 294 ~--d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
. +...+++++.++|||||.+++..|.
T Consensus 120 ~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 120 DEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 3 4577999999999999999987764
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.5e-12 Score=117.50 Aligned_cols=132 Identities=13% Similarity=0.100 Sum_probs=87.6
Q ss_pred CeEEEECCCCchHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCC-CCCCCceEEEeccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP-YPSRSFELAHCSRC 288 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~-----~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp-~~~~sFDlV~~s~~ 288 (514)
.+|||+|||+|.++..++.. .++++|+++..+..+..+ +...+. ++.+..+|...++ +.+++||+|++...
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 102 (197)
T 3eey_A 24 DTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKK-LTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLG 102 (197)
T ss_dssp CEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH-HHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEES
T ss_pred CEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCC
Confidence 58999999999999988753 688898888777666533 333343 6788888877775 56689999998753
Q ss_pred ccc--------cccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 289 RID--------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 289 ~l~--------~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
.+. ...+...++.++.++|||||++++..........+......++...+...+|.+...+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~ 171 (197)
T 3eey_A 103 YLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTD 171 (197)
T ss_dssp BCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEE
T ss_pred cccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 322 1123356999999999999999998743322122222222233333344567766543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.1e-11 Score=112.80 Aligned_cols=120 Identities=13% Similarity=-0.040 Sum_probs=88.4
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+|||||||+|.++..++. ..|+++|+++.++..+.. .++..+. ++.+..+|..+.......||+|++... +
T Consensus 56 ~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~-~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~-~- 132 (204)
T 3njr_A 56 GELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQK-NIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGG-G- 132 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSC-C-
T ss_pred CCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHH-HHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCc-c-
Confidence 36899999999999999885 467888888776665553 3334444 478888887763223357999997652 2
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+.. ++.++.++|||||+++++.... ....++.+.+++.|+++.....
T Consensus 133 ---~~~-~l~~~~~~LkpgG~lv~~~~~~--------~~~~~~~~~l~~~g~~i~~i~~ 179 (204)
T 3njr_A 133 ---SQA-LYDRLWEWLAPGTRIVANAVTL--------ESETLLTQLHARHGGQLLRIDI 179 (204)
T ss_dssp ---CHH-HHHHHHHHSCTTCEEEEEECSH--------HHHHHHHHHHHHHCSEEEEEEE
T ss_pred ---cHH-HHHHHHHhcCCCcEEEEEecCc--------ccHHHHHHHHHhCCCcEEEEEe
Confidence 455 9999999999999999987532 2355777888999988776543
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.7e-12 Score=118.64 Aligned_cols=133 Identities=18% Similarity=0.137 Sum_probs=93.1
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHH----HcCC-CeEEEeecCCCCCCCCCCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFAL----ERGI-PSTLGVLGTKRLPYPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~----~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s 286 (514)
..+|||||||+|.++..|+. ..|+++|+++.++.... +.|+ ..+. ++.+.++|+..+|+++++ |.|+..
T Consensus 28 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~-~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~ 105 (218)
T 3mq2_A 28 DDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKIS-AKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVL 105 (218)
T ss_dssp SEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHH-HHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEE
Confidence 35899999999999999984 36899999988776433 2222 2233 688999999999988766 777632
Q ss_pred c--ccc--ccccchHHHHHHHHhhCCCCeEEEEEeCCCCC--CCh------h-HHH-hHHHHHHHHHhcCcEEEEEec
Q 010274 287 R--CRI--DWLQRDGILLLELDRLLRPGGYFVYSSPEAYA--HDP------E-NRR-IWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 287 ~--~~l--~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~--~~~------e-~~~-~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
. +.. +|++++..+++++.++|||||.++++...... ... . ... .-+.+..+++++||++...+.
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~~~ 183 (218)
T 3mq2_A 106 MPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADCRY 183 (218)
T ss_dssp SCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceeeec
Confidence 2 122 36677788999999999999999996521100 000 0 011 123588899999999887654
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=116.23 Aligned_cols=98 Identities=22% Similarity=0.365 Sum_probs=76.5
Q ss_pred CeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC---CCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg---~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
.+|||||||+|.++..++.. .++++|+++..+ +.++++. .++.+..+|...+++++++||+|++.. .+
T Consensus 44 ~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~-----~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~-~~ 117 (215)
T 2pxx_A 44 DRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVV-----AAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKG-TL 117 (215)
T ss_dssp CCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHH-----HHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEES-HH
T ss_pred CeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHH-----HHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECc-ch
Confidence 57999999999999998853 567776665554 4444432 467888899888888888999999876 34
Q ss_pred ccc---------------cchHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 291 DWL---------------QRDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 291 ~~~---------------~d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
+++ .+...++.++.++|||||.+++.++..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 118 DALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 433 355789999999999999999988654
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.26 E-value=8.7e-11 Score=107.30 Aligned_cols=136 Identities=10% Similarity=0.052 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcC-CCeEEEee
Q 010274 192 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVL 268 (514)
Q Consensus 192 a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~ 268 (514)
.....+.+.+.+.. ....+|||+|||+|.++..++. ..++++|+++..+..+..+. ...+ .++.+...
T Consensus 20 ~~~~~~~~~~~~~~--------~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~~ 90 (183)
T 2yxd_A 20 KEEIRAVSIGKLNL--------NKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNL-AKFNIKNCQIIKG 90 (183)
T ss_dssp CHHHHHHHHHHHCC--------CTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHH-HHTTCCSEEEEES
T ss_pred HHHHHHHHHHHcCC--------CCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH-HHcCCCcEEEEEC
Confidence 34555556666543 2235899999999999999985 45778888777665555333 3334 35788888
Q ss_pred cCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEE
Q 010274 269 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 269 d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~ 348 (514)
|... ++++++||+|++... .+...++.++.++ |||.+++..+.. ....++.+.+++.||.+...
T Consensus 91 d~~~-~~~~~~~D~i~~~~~-----~~~~~~l~~~~~~--~gG~l~~~~~~~--------~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 91 RAED-VLDKLEFNKAFIGGT-----KNIEKIIEILDKK--KINHIVANTIVL--------ENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp CHHH-HGGGCCCSEEEECSC-----SCHHHHHHHHHHT--TCCEEEEEESCH--------HHHHHHHHHHHHTTCEEEEE
T ss_pred Cccc-cccCCCCcEEEECCc-----ccHHHHHHHHhhC--CCCEEEEEeccc--------ccHHHHHHHHHHcCCeEEEE
Confidence 8766 666679999998874 5667899999999 999999987542 22457788999999877665
Q ss_pred ecce
Q 010274 349 KDQT 352 (514)
Q Consensus 349 ~~~~ 352 (514)
+...
T Consensus 155 ~~~~ 158 (183)
T 2yxd_A 155 NVFI 158 (183)
T ss_dssp EEEE
T ss_pred Eeee
Confidence 5443
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-11 Score=116.36 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=83.9
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC----CCCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR----LPYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~----lp~~~~sFDlV~~s~ 287 (514)
..+|||||||+|.++..++. ..|+++|+++.++.. +++.|+.+ .++.+..+|... .++. ++||+|+|..
T Consensus 58 g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~-~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~ 134 (210)
T 1nt2_A 58 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEK-LLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQDI 134 (210)
T ss_dssp SCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHH-HHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEECC
T ss_pred CCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHH-HHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEEec
Confidence 46899999999999988874 468899988876533 33555554 356777777665 3455 7899999763
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEeCCC---CCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA---YAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~---~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
.+ ..+...++.++.|+|||||+|+++.+.. .....+ ..+.+-.+.+++. |++++....
T Consensus 135 --~~-~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~--~~~~~~~~~l~~~-f~~~~~~~~ 195 (210)
T 1nt2_A 135 --AQ-KNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPE--EVFKSVLKEMEGD-FKIVKHGSL 195 (210)
T ss_dssp --CS-TTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHH--HHHHHHHHHHHTT-SEEEEEEEC
T ss_pred --cC-hhHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHH--HHHHHHHHHHHhh-cEEeeeecC
Confidence 22 2233456999999999999999985321 111111 1221112236777 988876553
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.6e-11 Score=118.31 Aligned_cols=125 Identities=14% Similarity=0.031 Sum_probs=91.5
Q ss_pred CCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCC---CCCceEEEec
Q 010274 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYP---SRSFELAHCS 286 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~---~~sFDlV~~s 286 (514)
...+|||||||+|..+..|+. ..|+++|+++..+..+..+ +++.+. ++.+..+++++++.. +++||+|+|.
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERA-IEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHH-HHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 346899999999999888873 4688998888777666533 333344 588888888777643 4789999975
Q ss_pred ccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 287 ~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
. +.+...++.++.++|||||+|++...... . ....++.+.++..||++......
T Consensus 159 a-----~~~~~~ll~~~~~~LkpgG~l~~~~g~~~---~---~e~~~~~~~l~~~G~~~~~~~~~ 212 (249)
T 3g89_A 159 A-----VAPLCVLSELLLPFLEVGGAAVAMKGPRV---E---EELAPLPPALERLGGRLGEVLAL 212 (249)
T ss_dssp S-----SCCHHHHHHHHGGGEEEEEEEEEEECSCC---H---HHHTTHHHHHHHHTEEEEEEEEE
T ss_pred C-----cCCHHHHHHHHHHHcCCCeEEEEEeCCCc---H---HHHHHHHHHHHHcCCeEEEEEEe
Confidence 4 23557899999999999999987553211 1 22345677888999988775543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.6e-11 Score=108.63 Aligned_cols=118 Identities=14% Similarity=0.103 Sum_probs=82.5
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecC-CCCCCCCCCceEEEeccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGT-KRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~-~~lp~~~~sFDlV~~s~~ 288 (514)
..+|||+|||+|.++..++.. .|+++|+++..+..+.. .+.+.+. ++ +...|. ..++..+++||+|++...
T Consensus 26 ~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~~ 103 (178)
T 3hm2_A 26 HETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILS-NAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGGG 103 (178)
T ss_dssp TEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHH-HHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC-
T ss_pred CCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH-HHHHhCCCCCE-EEecchHhhhhccCCCCCEEEECCc
Confidence 358999999999999998753 57777777766554442 2233344 35 666665 333433378999998874
Q ss_pred ccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEE
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~ 348 (514)
+++ ..+++++.++|||||++++..... .....+..++++.|+++...
T Consensus 104 -~~~----~~~l~~~~~~L~~gG~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 3hm2_A 104 -LTA----PGVFAAAWKRLPVGGRLVANAVTV--------ESEQMLWALRKQFGGTISSF 150 (178)
T ss_dssp -TTC----TTHHHHHHHTCCTTCEEEEEECSH--------HHHHHHHHHHHHHCCEEEEE
T ss_pred -ccH----HHHHHHHHHhcCCCCEEEEEeecc--------ccHHHHHHHHHHcCCeeEEE
Confidence 554 569999999999999999977432 22456677888888877654
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-11 Score=125.80 Aligned_cols=131 Identities=10% Similarity=0.109 Sum_probs=90.8
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCC--CCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL--PYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~l--p~~~~sFDlV~~s~ 287 (514)
..+|||||||+|.++..+++ ..++++|+ +..+..+. +.+.+.+. ++.+..+|.... |++ ++||+|++..
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~ 256 (363)
T 3dp7_A 180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMR-KQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQ 256 (363)
T ss_dssp CSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHH-HHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEES
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHH-HHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEec
Confidence 46899999999999999985 24667776 54443333 22222232 578888887765 566 7899999988
Q ss_pred cccccccch--HHHHHHHHhhCCCCeEEEEEeCCCCCCChhH---------------------HHhHHHHHHHHHhcCcE
Q 010274 288 CRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPEN---------------------RRIWNAMYDLLKSMCWK 344 (514)
Q Consensus 288 ~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~~~~e~---------------------~~~~~~l~~ll~~~Gf~ 344 (514)
++|+.++. ..+|+++.++|||||+|++.++......... ....+++.++++++||+
T Consensus 257 -vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~ 335 (363)
T 3dp7_A 257 -FLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLE 335 (363)
T ss_dssp -CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEE
T ss_pred -hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCe
Confidence 56655554 5689999999999999999775322111110 00235788999999998
Q ss_pred EEEEec
Q 010274 345 IVSKKD 350 (514)
Q Consensus 345 ~v~~~~ 350 (514)
++....
T Consensus 336 ~v~~~~ 341 (363)
T 3dp7_A 336 VEEIQD 341 (363)
T ss_dssp ESCCCC
T ss_pred EEEEEe
Confidence 876543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-10 Score=118.27 Aligned_cols=131 Identities=15% Similarity=0.073 Sum_probs=92.6
Q ss_pred CCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCCCCCCCCceEEEeccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
...+|||||||+|.++..+++ ..++++|+ +..+..+.. ...+.+ .++.+..+|.. .+++. +||+|++.+
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~- 243 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHR-RFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSA- 243 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHH-HHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEES-
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHH-hhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEeh-
Confidence 347899999999999999884 24667777 655544442 223334 35888888876 45664 899999998
Q ss_pred ccccccch--HHHHHHHHhhCCCCeEEEEEeCCCCCCCh---hHH----------HhHHHHHHHHHhcCcEEEEEec
Q 010274 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDP---ENR----------RIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 289 ~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~~~~---e~~----------~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
++|+.++. ..+|+++.++|||||++++.++....... .+. ...+++.++++++||+.+....
T Consensus 244 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 320 (332)
T 3i53_A 244 VLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHP 320 (332)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred hhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 57777665 77999999999999999997753211100 000 0125788999999999887654
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-10 Score=120.41 Aligned_cols=131 Identities=13% Similarity=0.095 Sum_probs=93.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCCCCCCCCceEEEeccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
...+|||||||+|.++..+++. .++++|+ +..+..+.... .+.+ .++.+..+|.. .+++. .||+|++.+
T Consensus 202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~- 276 (369)
T 3gwz_A 202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELL-TGRGLADRCEILPGDFF-ETIPD-GADVYLIKH- 276 (369)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHH-HHTTCTTTEEEEECCTT-TCCCS-SCSEEEEES-
T ss_pred cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhh-hhcCcCCceEEeccCCC-CCCCC-CceEEEhhh-
Confidence 3478999999999999998853 4677777 65555444322 2333 35888888876 56665 899999998
Q ss_pred ccccccchH--HHHHHHHhhCCCCeEEEEEeCCCCCC-Chh----HH----------HhHHHHHHHHHhcCcEEEEEec
Q 010274 289 RIDWLQRDG--ILLLELDRLLRPGGYFVYSSPEAYAH-DPE----NR----------RIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 289 ~l~~~~d~~--~lL~el~RvLrPGG~lvis~P~~~~~-~~e----~~----------~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
++|+.++.. .+|+++.++|||||+|++.++..... ... +. ...+++.++++++||++++...
T Consensus 277 vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 355 (369)
T 3gwz_A 277 VLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLP 355 (369)
T ss_dssp CGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEEE
T ss_pred hhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEEE
Confidence 577777664 69999999999999999976422111 110 00 0125788999999999987654
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-11 Score=112.26 Aligned_cols=111 Identities=17% Similarity=0.108 Sum_probs=84.0
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCC---CCCCceEEEeccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY---PSRSFELAHCSRCRI 290 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~---~~~sFDlV~~s~~~l 290 (514)
.+.+|||||||. + + .|+++.|++.|+++.. ++.+.++|+..+++ ++++||+|+|+. ++
T Consensus 12 ~g~~vL~~~~g~-----------v-~-----vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~-~l 73 (176)
T 2ld4_A 12 AGQFVAVVWDKS-----------S-P-----VEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGL-VP 73 (176)
T ss_dssp TTSEEEEEECTT-----------S-C-----HHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECC-ST
T ss_pred CCCEEEEecCCc-----------e-e-----eeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECC-hh
Confidence 346899999996 1 2 4677777788777642 57888899888887 788999999888 68
Q ss_pred ccc-cchHHHHHHHHhhCCCCeEEEEEeCCCCCCC-hhHHHhHHHHHHHHHhcCc
Q 010274 291 DWL-QRDGILLLELDRLLRPGGYFVYSSPEAYAHD-PENRRIWNAMYDLLKSMCW 343 (514)
Q Consensus 291 ~~~-~d~~~lL~el~RvLrPGG~lvis~P~~~~~~-~e~~~~~~~l~~ll~~~Gf 343 (514)
||+ ++...+++++.|+|||||+|++..|...... ........++.++++++||
T Consensus 74 ~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred hhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 888 8889999999999999999999765221100 0000124678899999999
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-10 Score=116.70 Aligned_cols=155 Identities=12% Similarity=0.106 Sum_probs=105.7
Q ss_pred cCceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc--C-CCccccCChhhhhHH
Q 010274 175 NGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--H-DIIAMSLAPNDVHEN 251 (514)
Q Consensus 175 ~g~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~-~V~gvdis~~dis~a 251 (514)
.|-.+.+.-....|..........+.+.+. ...+|||+|||+|.++..++. . .|+++|+++.++..+
T Consensus 95 ~g~~f~~d~~~~~f~~~~~~~~~~l~~~~~----------~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a 164 (278)
T 2frn_A 95 NGIKYKLDVAKIMFSPANVKERVRMAKVAK----------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFL 164 (278)
T ss_dssp TTEEEEEETTTSCCCGGGHHHHHHHHHHCC----------TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHH
T ss_pred CCEEEEEEccceeEcCCcHHHHHHHHHhCC----------CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence 444445543345555554444445555432 235899999999999999984 3 489999998888766
Q ss_pred HHHHHHHcCCC--eEEEeecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHH
Q 010274 252 QIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRR 329 (514)
Q Consensus 252 ~~~~A~~rg~~--~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~ 329 (514)
..+ +...+.. +.+..+|+..++. +++||+|++.. ......++.++.++|||||++++.+....... ...
T Consensus 165 ~~n-~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~-----p~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~ 235 (278)
T 2frn_A 165 VEN-IHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGY-----VVRTHEFIPKALSIAKDGAIIHYHNTVPEKLM--PRE 235 (278)
T ss_dssp HHH-HHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECC-----CSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT--TTT
T ss_pred HHH-HHHcCCCceEEEEECCHHHhcc-cCCccEEEECC-----chhHHHHHHHHHHHCCCCeEEEEEEeeccccc--ccc
Confidence 643 3444443 7788999888876 67999999753 23335689999999999999998764321000 112
Q ss_pred hHHHHHHHHHhcCcEEEEE
Q 010274 330 IWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 330 ~~~~l~~ll~~~Gf~~v~~ 348 (514)
..+.+.+.+++.||.....
T Consensus 236 ~~~~i~~~~~~~G~~~~~~ 254 (278)
T 2frn_A 236 PFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp THHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHcCCeeEEe
Confidence 3567788999999987653
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.21 E-value=4.7e-11 Score=115.13 Aligned_cols=125 Identities=16% Similarity=0.174 Sum_probs=85.4
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC----CCCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR----LPYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~----lp~~~~sFDlV~~s~ 287 (514)
..+|||+|||+|.++..|+. ..|+++|+++.++..+. +.++.. .++.+..+|+.. +++. ++||+|++
T Consensus 75 ~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~-~~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~D~v~~-- 149 (230)
T 1fbn_A 75 DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL-DACAER-ENIIPILGDANKPQEYANIV-EKVDVIYE-- 149 (230)
T ss_dssp TCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHH-HHTTTC-TTEEEEECCTTCGGGGTTTS-CCEEEEEE--
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHH-HHhhcC-CCeEEEECCCCCcccccccC-ccEEEEEE--
Confidence 46899999999999999874 35778877776654443 222222 567888888877 7766 78999982
Q ss_pred cccccccch---HHHHHHHHhhCCCCeEEEEEeCC-CCCCChhHHHhH-HHHHHHHHhcCcEEEEEec
Q 010274 288 CRIDWLQRD---GILLLELDRLLRPGGYFVYSSPE-AYAHDPENRRIW-NAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 288 ~~l~~~~d~---~~lL~el~RvLrPGG~lvis~P~-~~~~~~e~~~~~-~~l~~ll~~~Gf~~v~~~~ 350 (514)
+++++ ..++.++.++|||||+++++... ...........+ +++. +++++||+.+....
T Consensus 150 ----~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~ 212 (230)
T 1fbn_A 150 ----DVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVD 212 (230)
T ss_dssp ----CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEE
T ss_pred ----ecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEc
Confidence 23344 66899999999999999996321 101111111223 4666 88999998877654
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-11 Score=117.56 Aligned_cols=128 Identities=14% Similarity=0.124 Sum_probs=88.7
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC---CCCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR---LPYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~---lp~~~~sFDlV~~s~ 287 (514)
..+|||+|||+|.++..|++ ..|+++|+++.++... ++.|+.+ .++.+..+|+.. +++.+++||+|++..
T Consensus 78 ~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~-~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~ 155 (233)
T 2ipx_A 78 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDL-INLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFADV 155 (233)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHH-HHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEECC
T ss_pred CCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHH-HHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEcC
Confidence 46899999999999999874 3688998888665433 3556554 568888888766 455567999999754
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEeCCC---CCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA---YAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~---~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
. .......++.++.++|||||+++++.+.. ...... ..+..-.++++++||+++....
T Consensus 156 ~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~--~~~~~~~~~l~~~Gf~~~~~~~ 216 (233)
T 2ipx_A 156 A---QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAE--AVFASEVKKMQQENMKPQEQLT 216 (233)
T ss_dssp C---CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHH--HHHHHHHHTTGGGTEEEEEEEE
T ss_pred C---CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHH--HHHHHHHHHHHHCCCceEEEEe
Confidence 2 22222456889999999999999976431 111111 1222225788999999887443
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.2e-11 Score=120.65 Aligned_cols=131 Identities=12% Similarity=0.146 Sum_probs=91.8
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
..+|||||||+|.++..+++. .++++|++ ..+..+..... +.+. ++.+..+|....++++ .||+|++.+ +
T Consensus 166 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~-~~D~v~~~~-~ 241 (335)
T 2r3s_A 166 PLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENAR-IQGVASRYHTIAGSAFEVDYGN-DYDLVLLPN-F 241 (335)
T ss_dssp CSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHH-HHTCGGGEEEEESCTTTSCCCS-CEEEEEEES-C
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHH-hcCCCcceEEEecccccCCCCC-CCcEEEEcc-h
Confidence 468999999999999998853 46677666 44444432222 2233 4788888888777765 499999988 5
Q ss_pred cccccch--HHHHHHHHhhCCCCeEEEEEeCCCCC--CChhHH----------------HhHHHHHHHHHhcCcEEEEEe
Q 010274 290 IDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYA--HDPENR----------------RIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 290 l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~--~~~e~~----------------~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
+|+.++. ..+++++.++|+|||++++.++.... ...... ...+++.++++++||+.+...
T Consensus 242 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~ 321 (335)
T 2r3s_A 242 LHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLH 321 (335)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEE
T ss_pred hccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEE
Confidence 7766444 68999999999999999998754321 111100 013578899999999888755
Q ss_pred c
Q 010274 350 D 350 (514)
Q Consensus 350 ~ 350 (514)
.
T Consensus 322 ~ 322 (335)
T 2r3s_A 322 S 322 (335)
T ss_dssp C
T ss_pred E
Confidence 4
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.6e-11 Score=110.19 Aligned_cols=115 Identities=12% Similarity=0.013 Sum_probs=85.4
Q ss_pred CeEEEECCCCchHHHHHhcC-CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~-~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d 295 (514)
.+|||+|||+|.++..++.. .|+++|+++.++ +. ..++.+.++|... ++++++||+|+++. .+++..+
T Consensus 25 ~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~-----~~----~~~~~~~~~d~~~-~~~~~~fD~i~~n~-~~~~~~~ 93 (170)
T 3q87_B 25 KIVLDLGTSTGVITEQLRKRNTVVSTDLNIRAL-----ES----HRGGNLVRADLLC-SINQESVDVVVFNP-PYVPDTD 93 (170)
T ss_dssp CEEEEETCTTCHHHHHHTTTSEEEEEESCHHHH-----HT----CSSSCEEECSTTT-TBCGGGCSEEEECC-CCBTTCC
T ss_pred CeEEEeccCccHHHHHHHhcCcEEEEECCHHHH-----hc----ccCCeEEECChhh-hcccCCCCEEEECC-CCccCCc
Confidence 58999999999999999865 566666555443 33 3457788888776 66668999999876 3554333
Q ss_pred h---------HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 296 D---------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 296 ~---------~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
. ..++.++.+.| |||.+++..+... ..+++.+++++.||+.+.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~--------~~~~l~~~l~~~gf~~~~~~~~ 149 (170)
T 3q87_B 94 DPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN--------RPKEVLARLEERGYGTRILKVR 149 (170)
T ss_dssp CTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG--------CHHHHHHHHHHTTCEEEEEEEE
T ss_pred cccccCCcchHHHHHHHHhhC-CCCEEEEEEecCC--------CHHHHHHHHHHCCCcEEEEEee
Confidence 2 56889999999 9999999774321 2457888999999988766554
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=8.3e-11 Score=121.21 Aligned_cols=131 Identities=20% Similarity=0.212 Sum_probs=89.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
...+|||||||+|.++..++.. .++++|+ +..+..+..+. ...+. ++.+..+|..+ +++. .||+|++..
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~- 256 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRF-ADAGLADRVTVAEGDFFK-PLPV-TADVVLLSF- 256 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHH-HHTTCTTTEEEEECCTTS-CCSC-CEEEEEEES-
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHH-HhcCCCCceEEEeCCCCC-cCCC-CCCEEEEec-
Confidence 3468999999999999998843 4667777 65555444322 23343 58888888754 4443 499999988
Q ss_pred ccccccchH--HHHHHHHhhCCCCeEEEEEeC--CCCCCChhHH----------------HhHHHHHHHHHhcCcEEEEE
Q 010274 289 RIDWLQRDG--ILLLELDRLLRPGGYFVYSSP--EAYAHDPENR----------------RIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 289 ~l~~~~d~~--~lL~el~RvLrPGG~lvis~P--~~~~~~~e~~----------------~~~~~l~~ll~~~Gf~~v~~ 348 (514)
++|+.++.. .+++++.++|||||++++.++ .......... ...+++.++++++||+++..
T Consensus 257 vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~ 336 (374)
T 1qzz_A 257 VLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASE 336 (374)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEE
T ss_pred cccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEE
Confidence 577666653 799999999999999998776 2111000000 02247889999999998876
Q ss_pred ec
Q 010274 349 KD 350 (514)
Q Consensus 349 ~~ 350 (514)
..
T Consensus 337 ~~ 338 (374)
T 1qzz_A 337 RT 338 (374)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.20 E-value=9.7e-11 Score=113.79 Aligned_cols=121 Identities=10% Similarity=0.090 Sum_probs=91.6
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHH-cCCCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~-rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
..+|||+|||+|.++..++. ..|+++|+++..+..+..+.... ...++.+...|....++++++||+|++.
T Consensus 97 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~--- 173 (258)
T 2pwy_A 97 GMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALD--- 173 (258)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEE---
T ss_pred CCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEEC---
Confidence 35899999999999988874 35788888877666555433333 2246788888988887887899999963
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
.+++..++.++.++|||||++++..|.. ....++.+.+++.||..+....
T Consensus 174 ---~~~~~~~l~~~~~~L~~gG~l~~~~~~~--------~~~~~~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 174 ---LMEPWKVLEKAALALKPDRFLVAYLPNI--------TQVLELVRAAEAHPFRLERVLE 223 (258)
T ss_dssp ---SSCGGGGHHHHHHHEEEEEEEEEEESCH--------HHHHHHHHHHTTTTEEEEEEEE
T ss_pred ---CcCHHHHHHHHHHhCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCceEEEEE
Confidence 3456679999999999999999988653 1245667778889998776554
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-11 Score=118.94 Aligned_cols=131 Identities=11% Similarity=0.109 Sum_probs=89.1
Q ss_pred CCCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCC---CCCCCCCCceEEEec
Q 010274 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK---RLPYPSRSFELAHCS 286 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~---~lp~~~~sFDlV~~s 286 (514)
++.+|||+|||+|.++..|++ ..|+++|+++.++..+. +.+.++ .++..+..+.. ..++..+++|+|++.
T Consensus 77 pG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~-~~a~~~-~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 77 EGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLL-TVVRDR-RNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHH-HHSTTC-TTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-HhhHhh-cCeeEEEEeccCccccccccceEEEEEEe
Confidence 346899999999999999984 35889988887775543 333332 35666666543 345667899999864
Q ss_pred ccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCC-CChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 287 ~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~-~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+.+..+...++.++.++|||||+++++....-. ........+.+..+.+++.||++++..+
T Consensus 155 ---~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~ 216 (233)
T 4df3_A 155 ---VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVH 216 (233)
T ss_dssp ---CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ---ccCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEc
Confidence 334566778999999999999999987522100 0000012345556778899999887654
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-11 Score=118.19 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=77.1
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCC-C--CCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRL-P--YPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~l-p--~~~~sFDlV~~s~ 287 (514)
..+|||||||+|.++..|+. ..|+|+|+++.++..+..+ +.+.+ .++.+..+|+..+ + +++++||.|++.+
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~-~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLAS-AHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH-HHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHH-HHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 35899999999999999984 3588999998888766643 34444 4688888887663 3 6788999999775
Q ss_pred cccccccch--------HHHHHHHHhhCCCCeEEEEEeC
Q 010274 288 CRIDWLQRD--------GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 288 ~~l~~~~d~--------~~lL~el~RvLrPGG~lvis~P 318 (514)
...|.... ..++.++.++|||||+|++++.
T Consensus 114 -~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 -PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp -CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred -CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 24443222 2599999999999999999874
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-11 Score=119.12 Aligned_cols=134 Identities=13% Similarity=0.113 Sum_probs=82.7
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCC-hhhhhHH---HHHHHHHcCC-CeEEEeecCCCCCCC-CCCceEEEe
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLA-PNDVHEN---QIQFALERGI-PSTLGVLGTKRLPYP-SRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis-~~dis~a---~~~~A~~rg~-~~~~~~~d~~~lp~~-~~sFDlV~~ 285 (514)
..+|||||||+|.++..|+. ..|+|+|++ +.++..+ . +.+.+.+. ++.+..+|+..+|.. .+.+|.|++
T Consensus 25 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~-~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~ 103 (225)
T 3p2e_A 25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKII-KKPSKGGLSNVVFVIAAAESLPFELKNIADSISI 103 (225)
T ss_dssp SEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHT-SCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred CCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH-HHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence 35899999999999999983 357889888 4333322 2 12223343 588899998888632 245666654
Q ss_pred cccc----cccccchHHHHHHHHhhCCCCeEEEEEeCC--CCCCC-------hhHHHhH---HHHHHHHHhcCcEEEEEe
Q 010274 286 SRCR----IDWLQRDGILLLELDRLLRPGGYFVYSSPE--AYAHD-------PENRRIW---NAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 286 s~~~----l~~~~d~~~lL~el~RvLrPGG~lvis~P~--~~~~~-------~e~~~~~---~~l~~ll~~~Gf~~v~~~ 349 (514)
.+.. .+...+...+|.++.|+|||||+|++.... .+... +.....| .++..+++++||.+...+
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~~~ 183 (225)
T 3p2e_A 104 LFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDVK 183 (225)
T ss_dssp ESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEEEE
T ss_pred eCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeeeee
Confidence 4310 111123456899999999999999993321 11000 0000111 248899999999988655
Q ss_pred c
Q 010274 350 D 350 (514)
Q Consensus 350 ~ 350 (514)
.
T Consensus 184 ~ 184 (225)
T 3p2e_A 184 E 184 (225)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-10 Score=114.79 Aligned_cols=125 Identities=10% Similarity=0.119 Sum_probs=83.5
Q ss_pred CCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEE-EeecCCCCC---CCCCCceEEEecc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTL-GVLGTKRLP---YPSRSFELAHCSR 287 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~~~~-~~~d~~~lp---~~~~sFDlV~~s~ 287 (514)
...+|||||||||.++..|++ ..|+++|+++.++..+. +....+.. ...++..++ ++..+||+|+|..
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~-----r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~ 159 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKL-----RQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDV 159 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHH-----HTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECC
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHH-----HhCcccceecccCceecchhhCCCCCCCEEEEEe
Confidence 346899999999999998874 36899999988886532 22223322 122333332 3344699999876
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCC------------hhH-HHhHHHHHHHHHhcCcEEEEE
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD------------PEN-RRIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~------------~e~-~~~~~~l~~ll~~~Gf~~v~~ 348 (514)
+ +++ ...+|.++.|+|||||.|++...+.+... +.. ....+++..+++++||.+...
T Consensus 160 s-f~s---l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~ 229 (291)
T 3hp7_A 160 S-FIS---LNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGL 229 (291)
T ss_dssp S-SSC---GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred e-Hhh---HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 4 433 36799999999999999998754332211 111 123467889999999987653
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.7e-10 Score=117.13 Aligned_cols=130 Identities=18% Similarity=0.111 Sum_probs=93.1
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHc-CCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
.+|||||||+|.++..++. ..++++|+ +..+..+........ ..++.+..+|... +++ ++||+|++.. ++|
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~-vl~ 244 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSR-IIG 244 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEES-CGG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEch-hcc
Confidence 6899999999999999874 35788988 777766654333221 2458888888766 555 6899999988 566
Q ss_pred cccchH--HHHHHHHhhCCCCeEEEEEeCCCCCC-ChhHH---------------HhHHHHHHHHHhcCcEEEEEec
Q 010274 292 WLQRDG--ILLLELDRLLRPGGYFVYSSPEAYAH-DPENR---------------RIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 292 ~~~d~~--~lL~el~RvLrPGG~lvis~P~~~~~-~~e~~---------------~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+.++.. .+++++.++|||||++++.++..... ..... ...+++.++++++||+.+....
T Consensus 245 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 321 (334)
T 2ip2_A 245 DLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVD 321 (334)
T ss_dssp GCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEE
Confidence 555554 89999999999999999986432110 00000 0135788999999999887543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.19 E-value=4e-11 Score=118.94 Aligned_cols=119 Identities=9% Similarity=0.111 Sum_probs=89.4
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHc-C-CCeEEEeecCCCCCCCCCCceEEEeccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-G-IPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~r-g-~~~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
..+|||+|||+|.++..++. ..|+++|+++..+..+..+. ... + .++.+..+|... ++++++||+|++
T Consensus 111 ~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~--- 185 (275)
T 1yb2_A 111 GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL-SEFYDIGNVRTSRSDIAD-FISDQMYDAVIA--- 185 (275)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHH-HTTSCCTTEEEECSCTTT-CCCSCCEEEEEE---
T ss_pred cCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHH-HhcCCCCcEEEEECchhc-cCcCCCccEEEE---
Confidence 46899999999999988874 35788888776665554332 222 3 357888888766 666788999996
Q ss_pred ccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+.+++..++.++.++|||||+++++++.. ....++.+.+++.||..+....
T Consensus 186 ---~~~~~~~~l~~~~~~LkpgG~l~i~~~~~--------~~~~~~~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 186 ---DIPDPWNHVQKIASMMKPGSVATFYLPNF--------DQSEKTVLSLSASGMHHLETVE 236 (275)
T ss_dssp ---CCSCGGGSHHHHHHTEEEEEEEEEEESSH--------HHHHHHHHHSGGGTEEEEEEEE
T ss_pred ---cCcCHHHHHHHHHHHcCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCeEEEEEE
Confidence 24566789999999999999999988653 1245677788899998876554
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-10 Score=115.06 Aligned_cols=120 Identities=16% Similarity=0.143 Sum_probs=86.3
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEeccc---
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRC--- 288 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~--- 288 (514)
.+|||+|||+|.++..++. ..|+++|+++..+..+..+.. ..+. ++.+..+|.... +++++||+|+++..
T Consensus 111 ~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~-~~~~~~v~~~~~d~~~~-~~~~~fD~Iv~npPy~~ 188 (276)
T 2b3t_A 111 CRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQ-HLAIKNIHILQSDWFSA-LAGQQFAMIVSNPPYID 188 (276)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHH-HHTCCSEEEECCSTTGG-GTTCCEEEEEECCCCBC
T ss_pred CEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCceEEEEcchhhh-cccCCccEEEECCCCCC
Confidence 5899999999999999883 468888888877766654333 3343 578888886553 34578999998631
Q ss_pred ---------ccccc------------cchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEE
Q 010274 289 ---------RIDWL------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 289 ---------~l~~~------------~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~ 347 (514)
+++|. .....++.++.++|||||++++..+... -+++.+++++.||..+.
T Consensus 189 ~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------~~~~~~~l~~~Gf~~v~ 259 (276)
T 2b3t_A 189 EQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQ---------GEAVRQAFILAGYHDVE 259 (276)
T ss_dssp TTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSC---------HHHHHHHHHHTTCTTCC
T ss_pred ccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchH---------HHHHHHHHHHCCCcEEE
Confidence 12222 2336689999999999999999764321 34678889999996544
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.4e-11 Score=117.71 Aligned_cols=120 Identities=13% Similarity=0.165 Sum_probs=89.6
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
.+|||+|||+|.++..++. ..|+++|+++..+..+.. .+...+..+.+..+|.... +++++||+|+++. ..++
T Consensus 122 ~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~-n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~-~~~~-- 196 (254)
T 2nxc_A 122 DKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEA-NAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANL-YAEL-- 196 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHH-HHHHTTCCCEEEESCHHHH-GGGCCEEEEEEEC-CHHH--
T ss_pred CEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHH-HHHHcCCcEEEEECChhhc-CcCCCCCEEEECC-cHHH--
Confidence 5899999999999988874 368899999888866663 3444455567777765442 4457899999765 2332
Q ss_pred chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 295 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 295 d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
...++.++.++|||||+++++.... ...+.+.+++++.||+++....
T Consensus 197 -~~~~l~~~~~~LkpgG~lils~~~~--------~~~~~v~~~l~~~Gf~~~~~~~ 243 (254)
T 2nxc_A 197 -HAALAPRYREALVPGGRALLTGILK--------DRAPLVREAMAGAGFRPLEEAA 243 (254)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEEG--------GGHHHHHHHHHHTTCEEEEEEE
T ss_pred -HHHHHHHHHHHcCCCCEEEEEeecc--------CCHHHHHHHHHHCCCEEEEEec
Confidence 4679999999999999999976322 1245788899999999887554
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=8.3e-11 Score=118.70 Aligned_cols=98 Identities=7% Similarity=0.046 Sum_probs=75.6
Q ss_pred CCCeEEEECCCCchHHHH-Hh---cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 215 NIRNVLDVGCGVASFGAY-LL---SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~-La---~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
.+.+|||||||+|.++.. ++ +..|+++|+++.++..+....++....++.+.++|+..++ +++||+|++...
T Consensus 122 ~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 122 RGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVAAL-- 197 (298)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEECTT--
T ss_pred CcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEECCC--
Confidence 457899999999976644 33 4578899888888777664443332246888999988776 689999997542
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
.++...+++++.|+|||||+|++...
T Consensus 198 --~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 198 --AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp --CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred --ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 57788999999999999999999764
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.9e-11 Score=118.67 Aligned_cols=96 Identities=25% Similarity=0.369 Sum_probs=75.4
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d 295 (514)
..+|||||||+|.++..++... .+.++.+.|+++.+++.|++++.++.+...|...+++++++||+|++... .
T Consensus 86 ~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-~----- 158 (269)
T 1p91_A 86 ATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA-P----- 158 (269)
T ss_dssp CCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC-C-----
T ss_pred CCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC-h-----
Confidence 3589999999999999988641 12233444556666677888777888999999999988899999997653 2
Q ss_pred hHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 296 DGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 296 ~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
..+.++.++|||||.+++.+|..
T Consensus 159 --~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 --CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp --CCHHHHHHHEEEEEEEEEEEECT
T ss_pred --hhHHHHHHhcCCCcEEEEEEcCH
Confidence 25899999999999999988754
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=9.7e-11 Score=120.49 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=94.0
Q ss_pred CCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
...+|||||||+|.++..++. ..++++|+ +..+..+..+.. +.+. ++.+..+|....++++ +|+|++..
T Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~--~D~v~~~~- 264 (359)
T 1x19_A 190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAA-EKGVADRMRGIAVDIYKESYPE--ADAVLFCR- 264 (359)
T ss_dssp TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHH-HTTCTTTEEEEECCTTTSCCCC--CSEEEEES-
T ss_pred CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHH-hcCCCCCEEEEeCccccCCCCC--CCEEEEec-
Confidence 346899999999999999884 25788888 777766653333 3333 4888999988877764 39999988
Q ss_pred ccccccc--hHHHHHHHHhhCCCCeEEEEEeCCCCC---CCh----------hHH------HhHHHHHHHHHhcCcEEEE
Q 010274 289 RIDWLQR--DGILLLELDRLLRPGGYFVYSSPEAYA---HDP----------ENR------RIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 289 ~l~~~~d--~~~lL~el~RvLrPGG~lvis~P~~~~---~~~----------e~~------~~~~~l~~ll~~~Gf~~v~ 347 (514)
++|+.++ ...+|+++.++|||||++++.++.... ... ... ...+++.++++++||+.+.
T Consensus 265 vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~ 344 (359)
T 1x19_A 265 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVT 344 (359)
T ss_dssp CGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEE
T ss_pred hhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEE
Confidence 5766665 577999999999999999887632100 000 000 1234778999999999887
Q ss_pred Eec
Q 010274 348 KKD 350 (514)
Q Consensus 348 ~~~ 350 (514)
...
T Consensus 345 ~~~ 347 (359)
T 1x19_A 345 MVR 347 (359)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=130.34 Aligned_cols=117 Identities=16% Similarity=0.280 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC-----CCccccCChhhhhHHHHHHHHH-----cC-C
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALE-----RG-I 261 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvdis~~dis~a~~~~A~~-----rg-~ 261 (514)
....+.+.+.+... ...+|||||||+|.++..|+.. .|+|+|+++.++..+..+.... .+ .
T Consensus 707 eqRle~LLelL~~~--------~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~ 778 (950)
T 3htx_A 707 KQRVEYALKHIRES--------SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK 778 (950)
T ss_dssp HHHHHHHHHHHHHS--------CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS
T ss_pred HHHHHHHHHHhccc--------CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC
Confidence 44455555555421 2368999999999999999853 4778877776665554333221 12 3
Q ss_pred CeEEEeecCCCCCCCCCCceEEEecccccccccchH--HHHHHHHhhCCCCeEEEEEeCC
Q 010274 262 PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG--ILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 262 ~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~--~lL~el~RvLrPGG~lvis~P~ 319 (514)
++.+.++|+..+++.+++||+|+|.. +++|++++. .+++++.|+|||| .+++++|.
T Consensus 779 nVefiqGDa~dLp~~d~sFDlVV~~e-VLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 779 SATLYDGSILEFDSRLHDVDIGTCLE-VIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp EEEEEESCTTSCCTTSCSCCEEEEES-CGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred ceEEEECchHhCCcccCCeeEEEEeC-chhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 57899999999999989999999988 688888765 5899999999999 88888874
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-10 Score=105.39 Aligned_cols=132 Identities=14% Similarity=0.205 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC--CeEEEee
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVL 268 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~ 268 (514)
......+.+.+.. ....+|||+|||+|.++..++.. .++++|+++..+..+..+. ...+. ++.+...
T Consensus 19 ~~~~~~~~~~~~~--------~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~-~~~~~~~~~~~~~~ 89 (192)
T 1l3i_A 19 MEVRCLIMCLAEP--------GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNL-QRHGLGDNVTLMEG 89 (192)
T ss_dssp HHHHHHHHHHHCC--------CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHH-HHTTCCTTEEEEES
T ss_pred HHHHHHHHHhcCC--------CCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHH-HHcCCCcceEEEec
Confidence 4444455555542 23358999999999999998863 5778877776665554332 23343 5777777
Q ss_pred cCCCCCCCC-CCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 269 GTKRLPYPS-RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 269 d~~~lp~~~-~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
|... ++++ ++||+|++... ++ +...++.++.++|+|||.+++..+.. ....++.+++++.||.+.
T Consensus 90 d~~~-~~~~~~~~D~v~~~~~-~~---~~~~~l~~~~~~l~~gG~l~~~~~~~--------~~~~~~~~~l~~~g~~~~ 155 (192)
T 1l3i_A 90 DAPE-ALCKIPDIDIAVVGGS-GG---ELQEILRIIKDKLKPGGRIIVTAILL--------ETKFEAMECLRDLGFDVN 155 (192)
T ss_dssp CHHH-HHTTSCCEEEEEESCC-TT---CHHHHHHHHHHTEEEEEEEEEEECBH--------HHHHHHHHHHHHTTCCCE
T ss_pred CHHH-hcccCCCCCEEEECCc-hH---HHHHHHHHHHHhcCCCcEEEEEecCc--------chHHHHHHHHHHCCCceE
Confidence 7654 2232 58999998763 33 34789999999999999999987532 234577888999999443
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-11 Score=118.90 Aligned_cols=121 Identities=13% Similarity=0.203 Sum_probs=75.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEe-ecC-----CCCC---CCCCCceE
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGV-LGT-----KRLP---YPSRSFEL 282 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~~~~~~~-~d~-----~~lp---~~~~sFDl 282 (514)
...+|||||||+|.++..|++. .|+++|+++.++..+ +++...+.... .+. ..++ +...+||+
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~ 111 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWK-----IRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDV 111 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHH-----HHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECC
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHH-----HHhCccccccccceEEEeCHhHcCcCCCCEEEEEE
Confidence 3468999999999999998853 688999988887653 33322221110 011 1121 22234444
Q ss_pred EEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCC------------Chh-HHHhHHHHHHHHHhcCcEEEEEe
Q 010274 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH------------DPE-NRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 283 V~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~------------~~e-~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
++++ ...+|.++.|+|||||+|++...+.+.. +.. .....+++.++++++||.++...
T Consensus 112 v~~~---------l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~ 182 (232)
T 3opn_A 112 SFIS---------LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLT 182 (232)
T ss_dssp SSSC---------GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred Ehhh---------HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEE
Confidence 4322 1569999999999999999864322111 111 11234688899999999987654
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.16 E-value=8e-11 Score=116.23 Aligned_cols=164 Identities=9% Similarity=-0.040 Sum_probs=98.2
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHH--cCC--CeEEEeecCCCC-------CCCCCCc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE--RGI--PSTLGVLGTKRL-------PYPSRSF 280 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~--rg~--~~~~~~~d~~~l-------p~~~~sF 280 (514)
..+|||+|||+|.++..++.. .|+++|+++..+..+..+.... .+. ++.+..+|+... ++++++|
T Consensus 37 ~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~f 116 (260)
T 2ozv_A 37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHF 116 (260)
T ss_dssp CEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCE
T ss_pred CCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCc
Confidence 358999999999999998843 5677777666554444222210 222 377888888776 3567899
Q ss_pred eEEEeccccc----------------cc-ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCc
Q 010274 281 ELAHCSRCRI----------------DW-LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 343 (514)
Q Consensus 281 DlV~~s~~~l----------------~~-~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf 343 (514)
|+|+|+.... +. ......+++++.++|||||+|++..+.. ...++...+++. |
T Consensus 117 D~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------~~~~~~~~l~~~-~ 186 (260)
T 2ozv_A 117 HHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ---------SVAEIIAACGSR-F 186 (260)
T ss_dssp EEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG---------GHHHHHHHHTTT-E
T ss_pred CEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH---------HHHHHHHHHHhc-C
Confidence 9999862111 11 1235679999999999999999977543 134566667664 7
Q ss_pred EEEEEecceEEEeccCcchhhhccCCC-----CCCCCcCC-CCCC-chhhhhc
Q 010274 344 KIVSKKDQTVIWAKPISNSCYLKRVPG-----SRPPLCSS-DDDP-DVTWNVL 389 (514)
Q Consensus 344 ~~v~~~~~~~iw~Kp~~~~c~~~r~~~-----~~P~lC~~-~~~~-~~~wy~~ 389 (514)
..+........-.++.+......++.+ ..|+|+.. ++.. ++.++..
T Consensus 187 ~~~~i~~v~~~~~~~~~~~lv~~~k~~~~~~~~~~~l~i~~~~~~~yt~~~~~ 239 (260)
T 2ozv_A 187 GGLEITLIHPRPGEDAVRMLVTAIKGSRARLTFRAPLIMHETGSHAFTPFVDD 239 (260)
T ss_dssp EEEEEEEEESSTTSCCCEEEEEEEETCCCCCEECCCEESSCTTCCSCCHHHHH
T ss_pred CceEEEEEcCCCCCCceEEEEEEEeCCCCCceecCCEEEECCCCCCCCHHHHH
Confidence 655443322112233333344444432 23566654 3334 5555433
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-10 Score=110.42 Aligned_cols=97 Identities=13% Similarity=0.034 Sum_probs=74.6
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..+|||||||+|.++..++. ..|+++|+++..+..+..+.......++.+..+|....+.++++||+|++.. .++++
T Consensus 78 ~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~-~~~~~ 156 (210)
T 3lbf_A 78 QSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTA-APPEI 156 (210)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESS-BCSSC
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEcc-chhhh
Confidence 46899999999999999885 4678888887766555533332222357888888877666678999999887 46666
Q ss_pred cchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 294 QRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
++ ++.++|||||+++++.+.
T Consensus 157 ~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 157 PT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CT------HHHHTEEEEEEEEEEECS
T ss_pred hH------HHHHhcccCcEEEEEEcC
Confidence 54 689999999999998876
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=8.9e-11 Score=114.46 Aligned_cols=121 Identities=17% Similarity=0.144 Sum_probs=83.0
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHH-----cC-CCeEEEeecCCC-CC--CCCCCceEE
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALE-----RG-IPSTLGVLGTKR-LP--YPSRSFELA 283 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~-----rg-~~~~~~~~d~~~-lp--~~~~sFDlV 283 (514)
.+|||||||+|.++..|+. ..++|+|+++.++..+..+.... .+ .++.+..+|+.. ++ +++++||.|
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~v 127 (235)
T 3ckk_A 48 VEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKM 127 (235)
T ss_dssp EEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEEE
T ss_pred CeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeEE
Confidence 5799999999999999985 35788988887776655333221 22 468889999876 66 778899999
Q ss_pred Eecccccccccc--------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcC-cEEE
Q 010274 284 HCSRCRIDWLQR--------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIV 346 (514)
Q Consensus 284 ~~s~~~l~~~~d--------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~G-f~~v 346 (514)
++.+. .+|... ...++.++.++|||||.|++.+... .....+.+.+...+ |..+
T Consensus 128 ~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~--------~~~~~~~~~l~~~~~f~~~ 190 (235)
T 3ckk_A 128 FFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVL--------ELHDWMCTHFEEHPLFERV 190 (235)
T ss_dssp EEESC-C-----------CCCHHHHHHHHHHEEEEEEEEEEESCH--------HHHHHHHHHHHTSTTEEEE
T ss_pred EEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCcccc
Confidence 86542 333211 1469999999999999999976431 12344556666665 5443
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-11 Score=126.00 Aligned_cols=101 Identities=16% Similarity=0.194 Sum_probs=76.2
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
.+|||+|||+|.++..++. ..|+++|+++.++..+.. .+...+....+...|....+ +++||+|+|+. .+|+
T Consensus 198 ~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~-~~~~~~~~~~~~~~d~~~~~--~~~fD~Iv~~~-~~~~ 273 (343)
T 2pjd_A 198 GKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRA-TLAANGVEGEVFASNVFSEV--KGRFDMIISNP-PFHD 273 (343)
T ss_dssp SBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHH-HHHHTTCCCEEEECSTTTTC--CSCEEEEEECC-CCCS
T ss_pred CeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHhCCCCEEEEccccccc--cCCeeEEEECC-Cccc
Confidence 4799999999999999874 368888888777765553 33344566677777765543 67999999887 3553
Q ss_pred -----ccchHHHHHHHHhhCCCCeEEEEEeCCCC
Q 010274 293 -----LQRDGILLLELDRLLRPGGYFVYSSPEAY 321 (514)
Q Consensus 293 -----~~d~~~lL~el~RvLrPGG~lvis~P~~~ 321 (514)
..+...++.++.++|||||.+++..+...
T Consensus 274 g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 307 (343)
T 2pjd_A 274 GMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL 307 (343)
T ss_dssp SSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTS
T ss_pred CccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCC
Confidence 33457799999999999999999876543
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-10 Score=113.64 Aligned_cols=128 Identities=11% Similarity=0.093 Sum_probs=85.9
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC---CCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---YPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp---~~~~sFDlV~~s~ 287 (514)
..+|||+|||+|.++..+++ ..|+++|+++.++.. +++.++++ .++.+..+|+.... ...++||+|++..
T Consensus 77 g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~-l~~~a~~r-~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~ 154 (232)
T 3id6_C 77 GTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRE-LLLVAQRR-PNIFPLLADARFPQSYKSVVENVDVLYVDI 154 (232)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHH-HHHHHHHC-TTEEEEECCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHH-HHHHhhhc-CCeEEEEcccccchhhhccccceEEEEecC
Confidence 46899999999999988874 368999998876533 34555554 57888888876532 1246899999775
Q ss_pred cccccccchHH-HHHHHHhhCCCCeEEEEEeCCCC---CCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 288 CRIDWLQRDGI-LLLELDRLLRPGGYFVYSSPEAY---AHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 288 ~~l~~~~d~~~-lL~el~RvLrPGG~lvis~P~~~---~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
. . ++... ++..+.++|||||+|+++..... ...++ +.+......+++.||++++....
T Consensus 155 a-~---~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~--e~~~~~~~~L~~~gf~~~~~~~l 216 (232)
T 3id6_C 155 A-Q---PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPK--EIYKTEVEKLENSNFETIQIINL 216 (232)
T ss_dssp C-C---TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSS--SSTTHHHHHHHHTTEEEEEEEEC
T ss_pred C-C---hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHH--HHHHHHHHHHHHCCCEEEEEecc
Confidence 2 2 34433 45566679999999999864321 11111 12345667778889998876543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.4e-11 Score=125.52 Aligned_cols=102 Identities=14% Similarity=0.219 Sum_probs=75.0
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC----CeEEEeecCCCCCCCCCCceEEEeccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~----~~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
.+|||+|||+|.++..++. ..|+++|+++.++..+..+.. ..+. ++.+...|... ++++++||+|+|+..
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~-~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~npp 301 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVE-TNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 301 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH-HHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECCC
T ss_pred CeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHH-HcCCCcCceEEEEechhhc-cCCCCCeeEEEECCC
Confidence 6899999999999999984 368889888877766664433 3332 46778888766 566789999998763
Q ss_pred ccccc---cch--HHHHHHHHhhCCCCeEEEEEeCCCC
Q 010274 289 RIDWL---QRD--GILLLELDRLLRPGGYFVYSSPEAY 321 (514)
Q Consensus 289 ~l~~~---~d~--~~lL~el~RvLrPGG~lvis~P~~~ 321 (514)
+|+. .+. ..++.++.++|||||.++++.+...
T Consensus 302 -fh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~ 338 (375)
T 4dcm_A 302 -FHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL 338 (375)
T ss_dssp -C-------CCHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred -cccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCc
Confidence 4432 121 3589999999999999999876543
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=104.99 Aligned_cols=111 Identities=16% Similarity=0.178 Sum_probs=80.9
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC--------CCCCCceE
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp--------~~~~sFDl 282 (514)
..+|||+|||+|.++..++. ..++++|+++ +... .++.+..+|....+ +++++||+
T Consensus 23 ~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~ 91 (180)
T 1ej0_A 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVGDSKVQV 91 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCCCCceeE
Confidence 35899999999999988873 4678888887 5421 45778888887766 67789999
Q ss_pred EEecccccccccch-----------HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEE
Q 010274 283 AHCSRCRIDWLQRD-----------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 283 V~~s~~~l~~~~d~-----------~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~ 347 (514)
|++.. .+++.... ..++.++.++|||||.++++.+... ....+.+.++.. |..+.
T Consensus 92 i~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--------~~~~~~~~~~~~-~~~~~ 157 (180)
T 1ej0_A 92 VMSDM-APNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE--------GFDEYLREIRSL-FTKVK 157 (180)
T ss_dssp EEECC-CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST--------THHHHHHHHHHH-EEEEE
T ss_pred EEECC-CccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC--------cHHHHHHHHHHh-hhhEE
Confidence 99876 45555444 5799999999999999999775432 123444555553 66554
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-10 Score=118.54 Aligned_cols=130 Identities=10% Similarity=0.117 Sum_probs=91.9
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCC-CCCCCceEEEeccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP-YPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp-~~~~sFDlV~~s~~ 288 (514)
..+|||||||+|.++..+++ ..++++|+ +..+..+. +...+.+. ++.+..+|....+ +..+.||+|++..
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~- 256 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAAR-KTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLND- 256 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHH-HHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEES-
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHH-HHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEec-
Confidence 57899999999999999884 35678888 55555444 33333343 4788888877765 1335799999988
Q ss_pred ccccccch--HHHHHHHHhhCCCCeEEEEEeCCCCC--CChhH----------------HHhHHHHHHHHHhcCcEEEEE
Q 010274 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYA--HDPEN----------------RRIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 289 ~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~--~~~e~----------------~~~~~~l~~ll~~~Gf~~v~~ 348 (514)
++|+.++. ..+|+++.++|||||++++.++.... ..... ....+++.++++++||++++.
T Consensus 257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 336 (352)
T 3mcz_A 257 CLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGER 336 (352)
T ss_dssp CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeee
Confidence 57766655 77999999999999999987632111 00000 011257889999999999874
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-10 Score=109.68 Aligned_cols=115 Identities=13% Similarity=0.027 Sum_probs=82.6
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
.+|||+|||+|.++..++. ..++++|+++..+..+..+ +...+. ++.+...|...++ ++++||+|++..
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~---- 140 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQV-QHELKLENIEPVQSRVEEFP-SEPPFDGVISRA---- 140 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHH-HHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC----
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCCeEEEecchhhCC-ccCCcCEEEEec----
Confidence 5899999999999998874 4678888887766555533 333344 4788888887766 457899999653
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
..+...++.++.++|+|||++++...... -+++..+++ ||+.+...
T Consensus 141 -~~~~~~~l~~~~~~L~~gG~l~~~~~~~~---------~~~~~~~~~--g~~~~~~~ 186 (207)
T 1jsx_A 141 -FASLNDMVSWCHHLPGEQGRFYALKGQMP---------EDEIALLPE--EYQVESVV 186 (207)
T ss_dssp -SSSHHHHHHHHTTSEEEEEEEEEEESSCC---------HHHHHTSCT--TEEEEEEE
T ss_pred -cCCHHHHHHHHHHhcCCCcEEEEEeCCCc---------hHHHHHHhc--CCceeeee
Confidence 24567899999999999999999754321 134444444 89877643
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.9e-11 Score=116.90 Aligned_cols=98 Identities=12% Similarity=0.130 Sum_probs=75.0
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCCCCCC-----CCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPS-----RSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~lp~~~-----~sFDlV~~s 286 (514)
..+|||||||+|.++..|+. ..|+++|+++.++ +.++++. .++.+.++|+..+++.. ..||+|++.
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~-----~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 57 ELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSAL-----EIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp TSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHH-----HHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHH-----HHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 35799999999999999985 3577776665544 5554442 36788888887765432 248999988
Q ss_pred cccccccc--chHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 287 RCRIDWLQ--RDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 287 ~~~l~~~~--d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
. +++|.+ +...+++++.++|||||++++.+..
T Consensus 132 ~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 132 T-GFHHIPVEKRELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp S-SSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred c-hhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 7 688887 6688999999999999999887643
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-11 Score=115.94 Aligned_cols=138 Identities=14% Similarity=0.054 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEee
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVL 268 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~ 268 (514)
+...+.+.+.+... ....+|||+|||+|.++..++.. .++++|+++..+..+..+.. ..+.++.+..+
T Consensus 15 ~~~~~~~~~~l~~~-------~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~ 86 (215)
T 4dzr_A 15 EVLVEEAIRFLKRM-------PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAE-RFGAVVDWAAA 86 (215)
T ss_dssp HHHHHHHHHHHTTC-------CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHH
T ss_pred HHHHHHHHHHhhhc-------CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH-HhCCceEEEEc
Confidence 44555555555421 23468999999999999998853 67888887776655543322 22335667777
Q ss_pred cCCCCCCCC-----CCceEEEecccc-----cccccc--------------------hHHHHHHHHhhCCCCeE-EEEEe
Q 010274 269 GTKRLPYPS-----RSFELAHCSRCR-----IDWLQR--------------------DGILLLELDRLLRPGGY-FVYSS 317 (514)
Q Consensus 269 d~~~lp~~~-----~sFDlV~~s~~~-----l~~~~d--------------------~~~lL~el~RvLrPGG~-lvis~ 317 (514)
|... ++++ ++||+|+++... +++... ...+++++.++|||||+ +++..
T Consensus 87 d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 165 (215)
T 4dzr_A 87 DGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV 165 (215)
T ss_dssp HHHH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred chHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 7655 5554 899999985321 111110 15688999999999999 66654
Q ss_pred CCCCCCChhHHHhHHHHHHHHH--hcCcEEEEE
Q 010274 318 PEAYAHDPENRRIWNAMYDLLK--SMCWKIVSK 348 (514)
Q Consensus 318 P~~~~~~~e~~~~~~~l~~ll~--~~Gf~~v~~ 348 (514)
+.. ..+.+.++++ +.||..+..
T Consensus 166 ~~~---------~~~~~~~~l~~~~~gf~~~~~ 189 (215)
T 4dzr_A 166 GHN---------QADEVARLFAPWRERGFRVRK 189 (215)
T ss_dssp TTS---------CHHHHHHHTGGGGGGTEECCE
T ss_pred CCc---------cHHHHHHHHHHhhcCCceEEE
Confidence 422 1356778888 899976543
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.8e-10 Score=116.74 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=90.8
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
..+|||||||+|.++..++.. .++++|+ +..+..+..+ +...+. ++.+..+|..+ +++. .||+|++.. +
T Consensus 184 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~-v 258 (360)
T 1tw3_A 184 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSY-LKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSF-V 258 (360)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHH-HHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEES-C
T ss_pred CcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHH-HHhcCCCCceEEEeCCCCC-CCCC-CccEEEEcc-c
Confidence 468999999999999998842 4556666 6555555433 333343 58888888754 4443 499999988 5
Q ss_pred cccccch--HHHHHHHHhhCCCCeEEEEEeCC-CCC-CChhH---H------------HhHHHHHHHHHhcCcEEEEEec
Q 010274 290 IDWLQRD--GILLLELDRLLRPGGYFVYSSPE-AYA-HDPEN---R------------RIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 290 l~~~~d~--~~lL~el~RvLrPGG~lvis~P~-~~~-~~~e~---~------------~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+|+.++. ..+++++.++|||||++++.++. ... ..... . ...+++.++++++||+++....
T Consensus 259 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 338 (360)
T 1tw3_A 259 LLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQ 338 (360)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEe
Confidence 7666665 47999999999999999998754 211 10000 0 0125788999999999887654
Q ss_pred c
Q 010274 351 Q 351 (514)
Q Consensus 351 ~ 351 (514)
.
T Consensus 339 ~ 339 (360)
T 1tw3_A 339 L 339 (360)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.8e-11 Score=120.92 Aligned_cols=127 Identities=12% Similarity=0.011 Sum_probs=86.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHH-HHHHHc--CCCeEEEeecCCCCCCCCCCceEEEecc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQI-QFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~-~~A~~r--g~~~~~~~~d~~~lp~~~~sFDlV~~s~ 287 (514)
...+|||||||+|.++..+++. .++++|+ +.... +.+... ..++.+..+|.. .+++ +||+|++..
T Consensus 184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~ 255 (348)
T 3lst_A 184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-----AEVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKR 255 (348)
T ss_dssp SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-----HHHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEES
T ss_pred CCceEEEECCccCHHHHHHHHHCCCCEEEEecC-----HHHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEEEEeh
Confidence 3468999999999999999852 3455555 22211 000111 235788888875 4455 899999988
Q ss_pred cccccccch--HHHHHHHHhhCCCCeEEEEEeCCCCCC---Chh-H--H----------HhHHHHHHHHHhcCcEEEEEe
Q 010274 288 CRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAH---DPE-N--R----------RIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 288 ~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~~---~~e-~--~----------~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
++|+.++. ..+|+++.++|||||+|++.++..... ... . . ...+++.++++++||+.++..
T Consensus 256 -vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 334 (348)
T 3lst_A 256 -ILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVV 334 (348)
T ss_dssp -CGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred -hccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEE
Confidence 57777776 589999999999999999977422111 000 0 0 123578899999999988765
Q ss_pred c
Q 010274 350 D 350 (514)
Q Consensus 350 ~ 350 (514)
.
T Consensus 335 ~ 335 (348)
T 3lst_A 335 G 335 (348)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=120.21 Aligned_cols=98 Identities=14% Similarity=0.167 Sum_probs=77.5
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCC--eEEEeecCCCCCCCCCCceEEEecc--c
Q 010274 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSR--C 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~~--~~~~~~d~~~lp~~~~sFDlV~~s~--~ 288 (514)
..+|||||||+|.++..+++. .|+++|+++ ++..+. +.+...+.. +.+..+|+.++++++++||+|++.. .
T Consensus 67 ~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~ 144 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAV-KIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 144 (349)
T ss_dssp TCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHH-HHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHH-HHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccc
Confidence 368999999999999999854 688999984 555444 444555543 8899999999999889999999854 1
Q ss_pred ccccccchHHHHHHHHhhCCCCeEEEE
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGYFVY 315 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~lvi 315 (514)
.+++......++.++.|+|||||+++.
T Consensus 145 ~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 145 CLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 244456778899999999999999984
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.6e-10 Score=113.63 Aligned_cols=101 Identities=12% Similarity=0.157 Sum_probs=75.3
Q ss_pred CCeEEEECCCC---chHHHHHh----cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC-----------CCC
Q 010274 216 IRNVLDVGCGV---ASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----------YPS 277 (514)
Q Consensus 216 ~~~VLDIGCGt---G~~a~~La----~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp-----------~~~ 277 (514)
.++|||||||+ |.++..+. +..|+++|+++.++..+.... ....++.++.+|+.+.+ ++.
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~--~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~ 155 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALL--AKDPNTAVFTADVRDPEYILNHPDVRRMIDF 155 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHH--TTCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhc--CCCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence 46899999999 98876654 346888888777665554322 11346788888875421 233
Q ss_pred CCceEEEecccccccccc--hHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 278 RSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d--~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
.+||+|++.. ++||+++ ...+|+++.++|||||+|++++..
T Consensus 156 ~~~d~v~~~~-vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 156 SRPAAIMLVG-MLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp TSCCEEEETT-TGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred CCCEEEEEec-hhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 4899999877 6888877 688999999999999999998754
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.2e-10 Score=111.53 Aligned_cols=118 Identities=12% Similarity=0.176 Sum_probs=87.7
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-C-eEEEeecCCCCCCCCCCceEEEeccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-P-STLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~-~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
..+|||+|||+|.++..++. ..++++|+++..+..+..+.. ..+. + +.+...|.... +++++||+|++.
T Consensus 94 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~-~~~~~~D~v~~~-- 169 (255)
T 3mb5_A 94 GDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIK-WAGFDDRVTIKLKDIYEG-IEEENVDHVILD-- 169 (255)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH-HHTCTTTEEEECSCGGGC-CCCCSEEEEEEC--
T ss_pred CCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHH-HcCCCCceEEEECchhhc-cCCCCcCEEEEC--
Confidence 46899999999999998874 357888888776665553333 3343 3 78888887654 677889999963
Q ss_pred ccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcC--cEEEEEe
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC--WKIVSKK 349 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~G--f~~v~~~ 349 (514)
.+++..++.++.++|||||++++..|.. ....++.+.+++.| |..+...
T Consensus 170 ----~~~~~~~l~~~~~~L~~gG~l~~~~~~~--------~~~~~~~~~l~~~g~~f~~~~~~ 220 (255)
T 3mb5_A 170 ----LPQPERVVEHAAKALKPGGFFVAYTPCS--------NQVMRLHEKLREFKDYFMKPRTI 220 (255)
T ss_dssp ----SSCGGGGHHHHHHHEEEEEEEEEEESSH--------HHHHHHHHHHHHTGGGBSCCEEE
T ss_pred ----CCCHHHHHHHHHHHcCCCCEEEEEECCH--------HHHHHHHHHHHHcCCCccccEEE
Confidence 3455679999999999999999987643 22456778888999 8665543
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.1e-10 Score=117.90 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=75.7
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCCCCCCCCceEEEeccc--
Q 010274 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRC-- 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~lp~~~~sFDlV~~s~~-- 288 (514)
..+|||||||+|.++..+++. .|+++|+++ ++..+. +.++..+ .++.+..+|+.++++++++||+|++...
T Consensus 65 ~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~-~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~ 142 (340)
T 2fyt_A 65 DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAM-DIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY 142 (340)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHH-HHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred CCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHH-HHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchh
Confidence 368999999999999998853 688999885 554444 3344444 3688899999999888889999997541
Q ss_pred ccccccchHHHHHHHHhhCCCCeEEE
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGYFV 314 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~lv 314 (514)
.+.+..+...++.++.++|||||.++
T Consensus 143 ~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 143 FLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 24445566789999999999999998
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-10 Score=115.02 Aligned_cols=96 Identities=11% Similarity=0.036 Sum_probs=66.7
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCC-----CCCCceEEEeccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY-----PSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~-----~~~sFDlV~~s~~ 288 (514)
..+|||||||+|.++..|++. .|+++|++ +.|++.|+++.... ....+...++. .+++||+|+|+.
T Consensus 46 g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S-----~~ml~~Ar~~~~~~-~v~~~~~~~~~~~~~~~~~~fD~Vv~~~- 118 (261)
T 3iv6_A 46 GSTVAVIGASTRFLIEKALERGASVTVFDFS-----QRMCDDLAEALADR-CVTIDLLDITAEIPKELAGHFDFVLNDR- 118 (261)
T ss_dssp TCEEEEECTTCHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHTSSS-CCEEEECCTTSCCCGGGTTCCSEEEEES-
T ss_pred cCEEEEEeCcchHHHHHHHhcCCEEEEEECC-----HHHHHHHHHHHHhc-cceeeeeecccccccccCCCccEEEEhh-
Confidence 468999999999999999853 56666555 45556665553221 22333333332 246899999987
Q ss_pred cccccc--chHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 289 RIDWLQ--RDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 289 ~l~~~~--d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
+++|.. +...++.++.++| |||.++++.+.
T Consensus 119 ~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 119 LINRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred hhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 466543 3466999999999 99999998754
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.08 E-value=8.9e-11 Score=111.17 Aligned_cols=122 Identities=12% Similarity=0.082 Sum_probs=81.8
Q ss_pred CccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC---C
Q 010274 189 HDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI---P 262 (514)
Q Consensus 189 ~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~---~ 262 (514)
....+.+.+.+.+.+... ....+|||+|||+|.++..++. ..|+++|+++.++..+..+. ...+. +
T Consensus 34 rp~~~~~~~~l~~~l~~~-------~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~-~~~~~~~~~ 105 (201)
T 2ift_A 34 RPTGDRVKETLFNWLMPY-------IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNL-QTLKCSSEQ 105 (201)
T ss_dssp ----CHHHHHHHHHHHHH-------HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHH-HHTTCCTTT
T ss_pred CcCHHHHHHHHHHHHHHh-------cCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHH-HHhCCCccc
Confidence 334445555555544321 0225899999999999998653 35889988888776666433 33443 6
Q ss_pred eEEEeecCCCCC--CCCCC-ceEEEecccccccccchHHHHHHH--HhhCCCCeEEEEEeCCC
Q 010274 263 STLGVLGTKRLP--YPSRS-FELAHCSRCRIDWLQRDGILLLEL--DRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 263 ~~~~~~d~~~lp--~~~~s-FDlV~~s~~~l~~~~d~~~lL~el--~RvLrPGG~lvis~P~~ 320 (514)
+.+..+|+..+. +++++ ||+|++... ++ ..+...++.++ .++|||||.++++....
T Consensus 106 v~~~~~d~~~~~~~~~~~~~fD~I~~~~~-~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 106 AEVINQSSLDFLKQPQNQPHFDVVFLDPP-FH-FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp EEEECSCHHHHTTSCCSSCCEEEEEECCC-SS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred eEEEECCHHHHHHhhccCCCCCEEEECCC-CC-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 788888866543 23578 999998763 33 45556788888 67899999999987554
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-10 Score=105.87 Aligned_cols=133 Identities=14% Similarity=0.048 Sum_probs=90.2
Q ss_pred ceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHH
Q 010274 177 EKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQI 253 (514)
Q Consensus 177 ~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~ 253 (514)
..+.++.+. ......+.+.+.+.+.+... ....+|||+|||+|.++..++. ..|+++|+++..+..+..
T Consensus 14 ~~~~~~~~~-~~rp~~~~~~~~~~~~l~~~-------~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~ 85 (187)
T 2fhp_A 14 RRLKALDGD-NTRPTTDKVKESIFNMIGPY-------FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKE 85 (187)
T ss_dssp CBCCCCCCC-SSCCCCHHHHHHHHHHHCSC-------CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred ccccCCCCC-CcCcCHHHHHHHHHHHHHhh-------cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHH
Confidence 344454432 44556677777777776421 1235899999999999998774 368889888877766654
Q ss_pred HHHHHcCC--CeEEEeecCCCC----CCCCCCceEEEecccccccccchHHHHHHH--HhhCCCCeEEEEEeCCC
Q 010274 254 QFALERGI--PSTLGVLGTKRL----PYPSRSFELAHCSRCRIDWLQRDGILLLEL--DRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 254 ~~A~~rg~--~~~~~~~d~~~l----p~~~~sFDlV~~s~~~l~~~~d~~~lL~el--~RvLrPGG~lvis~P~~ 320 (514)
+.. ..+. ++.+..+|.... ++.+++||+|++... ++ .......+..+ .++|+|||.+++..+..
T Consensus 86 ~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~-~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 86 NIA-ITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPP-YA-KQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp HHH-HHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC-GG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHH-HhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCC-CC-chhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 333 3343 477888886552 223578999998763 32 34456677777 89999999999987654
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.07 E-value=5e-10 Score=110.47 Aligned_cols=118 Identities=18% Similarity=0.207 Sum_probs=86.4
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHH-c--CCCeEEEeecCCCCCCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALE-R--GIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~-r--g~~~~~~~~d~~~lp~~~~sFDlV~~s~ 287 (514)
..+|||+|||+|.++..++. ..++++|+++..+..+..+.... . ..++.+..+|+...++++++||+|++.
T Consensus 100 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~~- 178 (280)
T 1i9g_A 100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLD- 178 (280)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEE-
T ss_pred CCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEEC-
Confidence 35899999999999998874 35788888887776665444333 2 246788889988888878899999963
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHh-cCcEEEE
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS-MCWKIVS 347 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~-~Gf~~v~ 347 (514)
.+++..++.++.++|+|||++++..|.. ....++...+++ .+|..+.
T Consensus 179 -----~~~~~~~l~~~~~~L~pgG~l~~~~~~~--------~~~~~~~~~l~~~~~f~~~~ 226 (280)
T 1i9g_A 179 -----MLAPWEVLDAVSRLLVAGGVLMVYVATV--------TQLSRIVEALRAKQCWTEPR 226 (280)
T ss_dssp -----SSCGGGGHHHHHHHEEEEEEEEEEESSH--------HHHHHHHHHHHHHSSBCCCE
T ss_pred -----CcCHHHHHHHHHHhCCCCCEEEEEeCCH--------HHHHHHHHHHHhcCCcCCcE
Confidence 2455679999999999999999988643 122344444554 7776443
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.1e-10 Score=120.44 Aligned_cols=121 Identities=13% Similarity=0.054 Sum_probs=86.9
Q ss_pred CCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc---C-CCccccCChhhhhHHHHHH------HH
Q 010274 188 FHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---H-DIIAMSLAPNDVHENQIQF------AL 257 (514)
Q Consensus 188 F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~-~V~gvdis~~dis~a~~~~------A~ 257 (514)
|..........+.+.+... ...+|||||||+|.++..++. . .|+|+|+++.++..+..+. ++
T Consensus 154 YGEt~~~~i~~il~~l~l~--------~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~ 225 (438)
T 3uwp_A 154 YGETSFDLVAQMIDEIKMT--------DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMK 225 (438)
T ss_dssp GGGTHHHHHHHHHHHHCCC--------TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhcCCC--------CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666532 336899999999999988873 3 3889999887665554322 22
Q ss_pred HcC---CCeEEEeecCCCCCCCC--CCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 258 ERG---IPSTLGVLGTKRLPYPS--RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 258 ~rg---~~~~~~~~d~~~lp~~~--~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
..+ .++.+..+|+..+++.+ ..||+|+++. .+ +.++....|.++.|+|||||+|+++.+
T Consensus 226 ~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn-~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 226 WYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNN-FA-FGPEVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp HHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECC-TT-CCHHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred HhCCCCCCeEEEECcccCCccccccCCccEEEEcc-cc-cCchHHHHHHHHHHcCCCCcEEEEeec
Confidence 223 46889999998888754 4799999876 34 456778889999999999999998654
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.7e-10 Score=113.93 Aligned_cols=96 Identities=13% Similarity=0.192 Sum_probs=70.2
Q ss_pred CeEEEECCCCch----HHHHHhc--------CCCccccCChhhhhHHHHHHHHHcC------------------------
Q 010274 217 RNVLDVGCGVAS----FGAYLLS--------HDIIAMSLAPNDVHENQIQFALERG------------------------ 260 (514)
Q Consensus 217 ~~VLDIGCGtG~----~a~~La~--------~~V~gvdis~~dis~a~~~~A~~rg------------------------ 260 (514)
.+|||+|||||. ++..|++ ..|+|+|+++.++ +.|++..
T Consensus 107 ~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L-----~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~ 181 (274)
T 1af7_A 107 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVL-----EKARSGIYRLSELKTLSPQQLQRYFMRGTGP 181 (274)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHH-----HHHHHTEEEGGGGTTSCHHHHHHHEEECCTT
T ss_pred cEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHH-----HHHHhcCCchhhhhcCCHHHHHHHhhccccC
Confidence 589999999997 5555553 2456666655555 4444320
Q ss_pred ------------CCeEEEeecCCCCCCC-CCCceEEEecccccccccch--HHHHHHHHhhCCCCeEEEEEeC
Q 010274 261 ------------IPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 261 ------------~~~~~~~~d~~~lp~~-~~sFDlV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P 318 (514)
..+.|.+.|....|++ .++||+|+|.+ +++|.++. ..++.+++++|+|||+|++...
T Consensus 182 ~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crn-vliyf~~~~~~~vl~~~~~~L~pgG~L~lg~s 253 (274)
T 1af7_A 182 HEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRN-VMIYFDKTTQEDILRRFVPLLKPDGLLFAGHS 253 (274)
T ss_dssp SCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECS-SGGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred CCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECC-chHhCCHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 1467888888776665 57899999988 57777655 6799999999999999998543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.2e-10 Score=115.86 Aligned_cols=128 Identities=13% Similarity=0.149 Sum_probs=86.8
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHH----HcCCCeEEEeecCCCCCC--CCCCceEEEe
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFAL----ERGIPSTLGVLGTKRLPY--PSRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~----~rg~~~~~~~~d~~~lp~--~~~sFDlV~~ 285 (514)
+.+|||||||+|.++..++.. .|+++|+++..+..+...+.. ....++.+..+|....+. ++++||+|++
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~ 175 (304)
T 3bwc_A 96 PERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVII 175 (304)
T ss_dssp CCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEEE
Confidence 468999999999999999853 567777776655444432211 012467888888766543 4679999998
Q ss_pred cccccccccch----HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEE
Q 010274 286 SRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 286 s~~~l~~~~d~----~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~ 348 (514)
.. ..++.+.. ..+++++.++|||||.+++.....+.. ......+.+.+++.||..+..
T Consensus 176 d~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~----~~~~~~~~~~l~~~GF~~v~~ 237 (304)
T 3bwc_A 176 DT-TDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLD----LELIEKMSRFIRETGFASVQY 237 (304)
T ss_dssp EC-C---------CCHHHHHHHHHHEEEEEEEEEEECCTTTC----HHHHHHHHHHHHHHTCSEEEE
T ss_pred CC-CCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccc----hHHHHHHHHHHHhCCCCcEEE
Confidence 65 33433222 579999999999999999987654321 223567788899999976643
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-10 Score=105.31 Aligned_cols=123 Identities=19% Similarity=0.219 Sum_probs=83.0
Q ss_pred CCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEE
Q 010274 188 FHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTL 265 (514)
Q Consensus 188 F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~ 265 (514)
+....+...+.+.+.+... + ....+|||+|||+|.++..++.. .++++|+++..+..+..+.. ..+.++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~---~---~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~ 92 (171)
T 1ws6_A 20 ARPSPVRLRKALFDYLRLR---Y---PRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVR-RTGLGARV 92 (171)
T ss_dssp CCCCCHHHHHHHHHHHHHH---C---TTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHH-HHTCCCEE
T ss_pred CCCCHHHHHHHHHHHHHhh---c---cCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH-HcCCceEE
Confidence 4445556666666555421 0 12358999999999999998853 47888888777766654333 33447788
Q ss_pred EeecCCCC-C-C--CCCCceEEEecccccccccchHHHHHHHH--hhCCCCeEEEEEeCCC
Q 010274 266 GVLGTKRL-P-Y--PSRSFELAHCSRCRIDWLQRDGILLLELD--RLLRPGGYFVYSSPEA 320 (514)
Q Consensus 266 ~~~d~~~l-p-~--~~~sFDlV~~s~~~l~~~~d~~~lL~el~--RvLrPGG~lvis~P~~ 320 (514)
...|.... + + ..++||+|++... ++ .+...+++.+. ++|||||.++++.+..
T Consensus 93 ~~~d~~~~~~~~~~~~~~~D~i~~~~~-~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 93 VALPVEVFLPEAKAQGERFTVAFMAPP-YA--MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp ECSCHHHHHHHHHHTTCCEEEEEECCC-TT--SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred EeccHHHHHHhhhccCCceEEEEECCC-Cc--hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 88886552 2 1 1247999998763 33 44556777777 9999999999988654
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=7.5e-10 Score=114.73 Aligned_cols=126 Identities=13% Similarity=0.047 Sum_probs=87.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
...+|||||||+|.++..++.. .++++|+ + .+++.+++. .++.+..+|... +++++ |+|++.. ++
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~~-~~v~~~~~d~~~-~~p~~--D~v~~~~-vl 271 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-P-----HVIQDAPAF-SGVEHLGGDMFD-GVPKG--DAIFIKW-IC 271 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEES-CG
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-H-----HHHHhhhhc-CCCEEEecCCCC-CCCCC--CEEEEec-hh
Confidence 3478999999999999999852 3455554 3 333444332 468888888776 67754 9999988 56
Q ss_pred ccccch--HHHHHHHHhhCCCCeEEEEEeCCCCC---CChh-------HH-----------HhHHHHHHHHHhcCcEEEE
Q 010274 291 DWLQRD--GILLLELDRLLRPGGYFVYSSPEAYA---HDPE-------NR-----------RIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 291 ~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~---~~~e-------~~-----------~~~~~l~~ll~~~Gf~~v~ 347 (514)
|+.++. ..+|+++.++|||||+|++.+..... .... +. ..-+++.++++++||+.++
T Consensus 272 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~ 351 (368)
T 3reo_A 272 HDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFK 351 (368)
T ss_dssp GGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEE
T ss_pred hcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeE
Confidence 655554 46899999999999999997643211 1100 00 0124788999999999887
Q ss_pred Eecc
Q 010274 348 KKDQ 351 (514)
Q Consensus 348 ~~~~ 351 (514)
....
T Consensus 352 ~~~~ 355 (368)
T 3reo_A 352 VASC 355 (368)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6543
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.9e-10 Score=117.36 Aligned_cols=99 Identities=15% Similarity=0.195 Sum_probs=76.9
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCC--eEEEeecCCCCCCCCCCceEEEecccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~~--~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
+..+|||||||+|.++..++.. .|+++|++ .++..+. +.++..+.. +.+..+|+..++++ ++||+|++.. +
T Consensus 63 ~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~-~ 138 (376)
T 3r0q_C 63 EGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHAR-ALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEW-M 138 (376)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHH-HHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECC-C
T ss_pred CCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHH-HHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcC-h
Confidence 3468999999999999998853 68899998 6665554 445555543 78999999998887 8999999854 2
Q ss_pred cccc---cchHHHHHHHHhhCCCCeEEEEEe
Q 010274 290 IDWL---QRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 290 l~~~---~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
.++. .....++.++.++|||||.++++.
T Consensus 139 ~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 139 GYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp BTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred hhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 3333 446779999999999999998643
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-09 Score=108.23 Aligned_cols=131 Identities=11% Similarity=0.078 Sum_probs=84.9
Q ss_pred CCeEEEECCCCchHHHHHhc--C-CCccccC-ChhhhhHHHHHHH----HHcCC------CeEEEeecCCCCC--C----
Q 010274 216 IRNVLDVGCGVASFGAYLLS--H-DIIAMSL-APNDVHENQIQFA----LERGI------PSTLGVLGTKRLP--Y---- 275 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~-~V~gvdi-s~~dis~a~~~~A----~~rg~------~~~~~~~d~~~lp--~---- 275 (514)
..+|||||||+|.++..++. . .|+++|+ ++..+..+..+.. ...+. ++.+...+..... +
T Consensus 80 ~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 159 (281)
T 3bzb_A 80 GKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCT 159 (281)
T ss_dssp TCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHH
T ss_pred CCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhc
Confidence 35899999999999998874 2 6888988 7777766554331 22222 3555544322211 1
Q ss_pred CCCCceEEEecccccccccchHHHHHHHHhhCC---C--CeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcC-cEEEEEe
Q 010274 276 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLR---P--GGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVSKK 349 (514)
Q Consensus 276 ~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLr---P--GG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~G-f~~v~~~ 349 (514)
++++||+|+++. ++++.++...++.++.++|+ | ||.+++.......... ....++.+.+++.| |++....
T Consensus 160 ~~~~fD~Ii~~d-vl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~---~~~~~~~~~l~~~G~f~v~~~~ 235 (281)
T 3bzb_A 160 GLQRFQVVLLAD-LLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLA---ERDLAFFRLVNADGALIAEPWL 235 (281)
T ss_dssp SCSSBSEEEEES-CCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC-----------CTHHHHHHHHSTTEEEEEEE
T ss_pred cCCCCCEEEEeC-cccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccc---hhHHHHHHHHHhcCCEEEEEec
Confidence 357899999887 57778888899999999999 9 9988765432211100 11134556788999 9887654
Q ss_pred c
Q 010274 350 D 350 (514)
Q Consensus 350 ~ 350 (514)
.
T Consensus 236 ~ 236 (281)
T 3bzb_A 236 S 236 (281)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-10 Score=119.87 Aligned_cols=125 Identities=14% Similarity=0.018 Sum_probs=87.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
...+|||||||+|.++..+++. .++++|+ +.+++.|++. .++.+..+|... ++++ ||+|+++. ++
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~------~~~~~~a~~~-~~v~~~~~d~~~-~~~~--~D~v~~~~-~l 277 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL------PQVIENAPPL-SGIEHVGGDMFA-SVPQ--GDAMILKA-VC 277 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC------HHHHTTCCCC-TTEEEEECCTTT-CCCC--EEEEEEES-SG
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh------HHHHHhhhhc-CCCEEEeCCccc-CCCC--CCEEEEec-cc
Confidence 3468999999999999999853 2334444 3344444432 458888888776 6664 99999988 57
Q ss_pred ccccchH--HHHHHHHhhCCCCeEEEEEeC---CCCCCC-----hhHHH------------hHHHHHHHHHhcCcEEEEE
Q 010274 291 DWLQRDG--ILLLELDRLLRPGGYFVYSSP---EAYAHD-----PENRR------------IWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 291 ~~~~d~~--~lL~el~RvLrPGG~lvis~P---~~~~~~-----~e~~~------------~~~~l~~ll~~~Gf~~v~~ 348 (514)
|+.++.. .+|+++.++|||||++++.+. ...... ..... ..+++.++++++||+.+..
T Consensus 278 h~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 357 (372)
T 1fp1_D 278 HNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQV 357 (372)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEE
Confidence 8777776 899999999999999998752 221110 00000 1247889999999988775
Q ss_pred ec
Q 010274 349 KD 350 (514)
Q Consensus 349 ~~ 350 (514)
..
T Consensus 358 ~~ 359 (372)
T 1fp1_D 358 AC 359 (372)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.03 E-value=9.6e-11 Score=110.95 Aligned_cols=99 Identities=11% Similarity=0.211 Sum_probs=72.1
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
+.+|||+|||+|.++..++. ..++++|+++.++.-+.. .+...|....+...|.... .+.++||+|+... ++|
T Consensus 50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~-~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k-~LH 126 (200)
T 3fzg_A 50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSS-IIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLK-MLP 126 (200)
T ss_dssp CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHH-HHHHSCCSSEEEEECCHHH-HTTSEEEEEEEET-CHH
T ss_pred CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHHhcCCCccEEEeccccc-CCCCCcChhhHhh-HHH
Confidence 35899999999999999953 367778777776655553 3344466544444555443 3457899999777 789
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
++++.+..+.++.+.|||||.++-..
T Consensus 127 lL~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 127 VLKQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred hhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence 88666667789999999999888533
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.02 E-value=6e-10 Score=106.65 Aligned_cols=96 Identities=10% Similarity=0.081 Sum_probs=69.2
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..+|||||||+|.++..++. ..|+++|+++..+..+... ....+ ++.+..+|.......+++||+|++.. .++++
T Consensus 71 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~-~~~~~-~v~~~~~d~~~~~~~~~~fD~v~~~~-~~~~~ 147 (231)
T 1vbf_A 71 GQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKL-LSYYN-NIKLILGDGTLGYEEEKPYDRVVVWA-TAPTL 147 (231)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHH-HTTCS-SEEEEESCGGGCCGGGCCEEEEEESS-BBSSC
T ss_pred CCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHH-HhhcC-CeEEEECCcccccccCCCccEEEECC-cHHHH
Confidence 35899999999999999985 4577777766555433321 12223 67888888766333457899999887 46665
Q ss_pred cchHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 294 QRDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
. .++.++|||||+++++.+..
T Consensus 148 ~------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 148 L------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp C------HHHHHTEEEEEEEEEEECSS
T ss_pred H------HHHHHHcCCCcEEEEEEcCC
Confidence 4 47899999999999987643
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.02 E-value=6.1e-10 Score=105.45 Aligned_cols=122 Identities=11% Similarity=-0.035 Sum_probs=82.7
Q ss_pred CCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC-Ce
Q 010274 188 FHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI-PS 263 (514)
Q Consensus 188 F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~-~~ 263 (514)
+....+...+.+.+.+... ....+|||+|||+|.++..++. ..|+++|+++.++..+..+ +...+. ++
T Consensus 34 ~rp~~~~~~~~l~~~l~~~-------~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~-~~~~~~~~v 105 (202)
T 2fpo_A 34 LRPTTDRVRETLFNWLAPV-------IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKN-LATLKAGNA 105 (202)
T ss_dssp ----CHHHHHHHHHHHHHH-------HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHH-HHHTTCCSE
T ss_pred CCCCHHHHHHHHHHHHHhh-------cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHH-HHHcCCCcE
Confidence 3444555666666555421 0235899999999999997653 3688898888877666533 333443 67
Q ss_pred EEEeecCCC-CCCCCCCceEEEecccccccccchHHHHHHHHh--hCCCCeEEEEEeCC
Q 010274 264 TLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQRDGILLLELDR--LLRPGGYFVYSSPE 319 (514)
Q Consensus 264 ~~~~~d~~~-lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~R--vLrPGG~lvis~P~ 319 (514)
.+..+|+.+ ++..+++||+|++... ++ ......++.++.+ +|+|||+++++...
T Consensus 106 ~~~~~D~~~~~~~~~~~fD~V~~~~p-~~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 106 RVVNSNAMSFLAQKGTPHNIVFVDPP-FR-RGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp EEECSCHHHHHSSCCCCEEEEEECCS-SS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred EEEECCHHHHHhhcCCCCCEEEECCC-CC-CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 888888765 5666678999998753 33 3455678888865 59999999997754
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3e-10 Score=116.67 Aligned_cols=124 Identities=10% Similarity=0.038 Sum_probs=88.0
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+|||||||+|.++..+++. .++++|+ + .+++.|++. .++.+..+|... ++++ ||+|+++. ++|
T Consensus 189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~~-~~v~~~~~d~~~-~~p~--~D~v~~~~-~lh 257 (352)
T 1fp2_A 189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-P-----QVVENLSGS-NNLTYVGGDMFT-SIPN--ADAVLLKY-ILH 257 (352)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCCB-TTEEEEECCTTT-CCCC--CSEEEEES-CGG
T ss_pred CceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-H-----HHHhhcccC-CCcEEEeccccC-CCCC--ccEEEeeh-hhc
Confidence 468999999999999999843 4566655 4 344444433 347888888765 5553 99999988 577
Q ss_pred cccchH--HHHHHHHhhCCC---CeEEEEEeCCCCC--CCh---hHH--------------HhHHHHHHHHHhcCcEEEE
Q 010274 292 WLQRDG--ILLLELDRLLRP---GGYFVYSSPEAYA--HDP---ENR--------------RIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 292 ~~~d~~--~lL~el~RvLrP---GG~lvis~P~~~~--~~~---e~~--------------~~~~~l~~ll~~~Gf~~v~ 347 (514)
+.++.. .+|+++.++||| ||++++.++.... ..+ ... ...+++.++++++||+.+.
T Consensus 258 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 337 (352)
T 1fp2_A 258 NWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYK 337 (352)
T ss_dssp GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeE
Confidence 777776 899999999999 9999997642211 110 000 1125788999999998877
Q ss_pred Eec
Q 010274 348 KKD 350 (514)
Q Consensus 348 ~~~ 350 (514)
...
T Consensus 338 ~~~ 340 (352)
T 1fp2_A 338 ISP 340 (352)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.01 E-value=7.8e-10 Score=109.51 Aligned_cols=119 Identities=13% Similarity=0.136 Sum_probs=87.3
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
..+|||+|||+|.++..++. ..|+++|+++..+..+..+ +...+. ++.+...|.... +++++||+|++.
T Consensus 113 ~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~~-- 188 (277)
T 1o54_A 113 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESN-LTKWGLIERVTIKVRDISEG-FDEKDVDALFLD-- 188 (277)
T ss_dssp TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHH-HHHTTCGGGEEEECCCGGGC-CSCCSEEEEEEC--
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH-HHHcCCCCCEEEEECCHHHc-ccCCccCEEEEC--
Confidence 35899999999999988874 3577888877666555433 233343 577888887665 666789999963
Q ss_pred ccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
.+++..++.++.++|+|||.+++..+.. ....++.+.+++.||..+....
T Consensus 189 ----~~~~~~~l~~~~~~L~pgG~l~~~~~~~--------~~~~~~~~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 189 ----VPDPWNYIDKCWEALKGGGRFATVCPTT--------NQVQETLKKLQELPFIRIEVWE 238 (277)
T ss_dssp ----CSCGGGTHHHHHHHEEEEEEEEEEESSH--------HHHHHHHHHHHHSSEEEEEEEC
T ss_pred ----CcCHHHHHHHHHHHcCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCceeEEEE
Confidence 3456679999999999999999988642 1235666778889998776544
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=104.89 Aligned_cols=127 Identities=13% Similarity=0.170 Sum_probs=82.8
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC---CCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---YPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp---~~~~sFDlV~~s~ 287 (514)
..+|||+|||+|.++..|++ ..|+++|+++.++..+. +.++.. .++.+..+|+.... ...++||+|++..
T Consensus 74 ~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~-~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~ 151 (227)
T 1g8a_A 74 GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEER-RNIVPILGDATKPEEYRALVPKVDVIFEDV 151 (227)
T ss_dssp TCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSSC-TTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHH-HHHhcc-CCCEEEEccCCCcchhhcccCCceEEEECC
Confidence 46899999999999998873 46788888876664443 333333 56788888876521 1235899999764
Q ss_pred cccccccch-HHHHHHHHhhCCCCeEEEEEeCCCC-CCChhHHHhH-HHHHHHHHhcCcEEEEEec
Q 010274 288 CRIDWLQRD-GILLLELDRLLRPGGYFVYSSPEAY-AHDPENRRIW-NAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 288 ~~l~~~~d~-~~lL~el~RvLrPGG~lvis~P~~~-~~~~e~~~~~-~~l~~ll~~~Gf~~v~~~~ 350 (514)
. .++. ..++.++.++|||||++++...... .......... +++..+ ++. |+++....
T Consensus 152 ~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~ 211 (227)
T 1g8a_A 152 A----QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLN 211 (227)
T ss_dssp C----STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEE
T ss_pred C----CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEec
Confidence 2 2233 3469999999999999998743211 1111111222 456666 666 98876544
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.01 E-value=2.5e-10 Score=104.81 Aligned_cols=119 Identities=17% Similarity=0.047 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEE
Q 010274 192 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLG 266 (514)
Q Consensus 192 a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~--~~~~~ 266 (514)
.+...+.+.+.+... ....+|||+|||+|.++..++.. .|+++|+++..+..+.. .+...+. ++.+.
T Consensus 15 ~~~~~~~~~~~l~~~-------~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~ 86 (177)
T 2esr_A 15 SDKVRGAIFNMIGPY-------FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQD-NIIMTKAENRFTLL 86 (177)
T ss_dssp ---CHHHHHHHHCSC-------CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHH-HHHTTTCGGGEEEE
T ss_pred HHHHHHHHHHHHHhh-------cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHcCCCCceEEE
Confidence 344445555555411 23358999999999999988853 57888887776655543 3333343 47788
Q ss_pred eecCCC-CCCCCCCceEEEecccccccccchHHHHHHHH--hhCCCCeEEEEEeCCC
Q 010274 267 VLGTKR-LPYPSRSFELAHCSRCRIDWLQRDGILLLELD--RLLRPGGYFVYSSPEA 320 (514)
Q Consensus 267 ~~d~~~-lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~--RvLrPGG~lvis~P~~ 320 (514)
.+|... ++..+++||+|++... .+ .......+..+. ++|+|||.+++..+..
T Consensus 87 ~~d~~~~~~~~~~~fD~i~~~~~-~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 87 KMEAERAIDCLTGRFDLVFLDPP-YA-KETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp CSCHHHHHHHBCSCEEEEEECCS-SH-HHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred ECcHHHhHHhhcCCCCEEEECCC-CC-cchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 888655 3433467999998752 22 233456777776 9999999999987654
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.00 E-value=9.8e-10 Score=111.66 Aligned_cols=126 Identities=19% Similarity=0.156 Sum_probs=86.9
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEec---
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCS--- 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s--- 286 (514)
..+|||+|||+|..+..|+. ..|+++|+++..+..+..+. ...+. ++.+..+|...++..+++||+|++.
T Consensus 119 g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~-~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pc 197 (315)
T 1ixk_A 119 GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNL-SRLGVLNVILFHSSSLHIGELNVEFDKILLDAPC 197 (315)
T ss_dssp TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHH-HHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCT
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH-HHhCCCeEEEEECChhhcccccccCCEEEEeCCC
Confidence 35899999999999999884 35888988887776655433 33344 6788888887776545789999973
Q ss_pred --ccccccccc----------------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEE
Q 010274 287 --RCRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 287 --~~~l~~~~d----------------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~ 347 (514)
..+++..++ ...+|.++.++|||||++++++..... .++ -..+..++++.+|+.+.
T Consensus 198 sg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~--~En---e~~v~~~l~~~~~~~~~ 271 (315)
T 1ixk_A 198 TGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP--EEN---EFVIQWALDNFDVELLP 271 (315)
T ss_dssp TSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG--GGT---HHHHHHHHHHSSEEEEC
T ss_pred CCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCh--HHh---HHHHHHHHhcCCCEEec
Confidence 112222221 147899999999999999998754321 122 13456777888887663
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=103.19 Aligned_cols=97 Identities=13% Similarity=0.050 Sum_probs=70.4
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||||||+|.++..++. ..|+++|+++..+..+..........++.+...|.......+++||+|++.. .+
T Consensus 78 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~-~~ 156 (215)
T 2yxe_A 78 GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTA-AG 156 (215)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESS-BB
T ss_pred CCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECC-ch
Confidence 35899999999999988873 4678888887766555533333222357777777643322357899999887 46
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
+++. .++.++|||||++++..+.
T Consensus 157 ~~~~------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 157 PKIP------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp SSCC------HHHHHTEEEEEEEEEEESS
T ss_pred HHHH------HHHHHHcCCCcEEEEEECC
Confidence 6654 4889999999999998764
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.6e-09 Score=109.86 Aligned_cols=122 Identities=16% Similarity=0.038 Sum_probs=89.0
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
..+|||+|||+|.++..++. ..++|+|+++.++..+..+ +...+. .+.+.++|+.+++.+.+.||+|+++...
T Consensus 204 ~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n-~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npPy 282 (354)
T 3tma_A 204 GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREA-ALASGLSWIRFLRADARHLPRFFPEVDRILANPPH 282 (354)
T ss_dssp TCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHH-HHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCCS
T ss_pred CCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHH-HHHcCCCceEEEeCChhhCccccCCCCEEEECCCC
Confidence 35799999999999988874 5788999988888766643 444454 6889999999988777789999985321
Q ss_pred cccc-------cchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 290 IDWL-------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 290 l~~~-------~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
-... .....++.++.++|||||.+++.++.. ..+..+++ .||+......
T Consensus 283 g~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~-----------~~~~~~~~-~g~~~~~~~~ 338 (354)
T 3tma_A 283 GLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP-----------ALLKRALP-PGFALRHARV 338 (354)
T ss_dssp CC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH-----------HHHHHHCC-TTEEEEEEEE
T ss_pred cCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH-----------HHHHHHhh-cCcEEEEEEE
Confidence 1111 112568999999999999999988642 22345555 8998765443
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-09 Score=112.09 Aligned_cols=97 Identities=19% Similarity=0.273 Sum_probs=74.5
Q ss_pred CeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccc--c
Q 010274 217 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC--R 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~--~ 289 (514)
.+|||||||+|.++..++.. .|+++|+++ ++..+. +.+...+. .+.+..+|+.++++++++||+|++... .
T Consensus 40 ~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~-~~~~a~-~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~ 117 (328)
T 1g6q_1 40 KIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAK-ELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF 117 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHH-HHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred CEEEEecCccHHHHHHHHHCCCCEEEEEChHH-HHHHHH-HHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchhh
Confidence 58999999999999988853 688999884 554443 44444443 478889999888888789999998641 2
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEE
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVY 315 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvi 315 (514)
+.+......++.++.++|||||.++.
T Consensus 118 l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 118 LLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp BSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 33445567899999999999999984
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-11 Score=117.47 Aligned_cols=98 Identities=15% Similarity=0.157 Sum_probs=76.7
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+|||+|||+|.++..++. ..|+++|+++.++..+. +.+...+. ++.+..+|+..++ ++++||+|+++. .++
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~-~~~ 155 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALAR-NNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSP-PWG 155 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECC-CCS
T ss_pred CCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHH-HHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECC-CcC
Confidence 35899999999999999985 46788888887776655 33344454 6888999887776 557999999877 577
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEE
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis 316 (514)
+..+....+.++.++|+|||.+++.
T Consensus 156 ~~~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 156 GPDYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp SGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred CcchhhhHHHHHHhhcCCcceeHHH
Confidence 7776666888999999999997764
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-09 Score=112.81 Aligned_cols=126 Identities=17% Similarity=0.085 Sum_probs=87.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
...+|||||||+|.++..+++. .++++|+ + .+++.|++. .++.+..+|... |++.+ |+|++.. ++
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~v~~~~-vl 269 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-P-----HVISEAPQF-PGVTHVGGDMFK-EVPSG--DTILMKW-IL 269 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEES-CG
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-H-----HHHHhhhhc-CCeEEEeCCcCC-CCCCC--CEEEehH-Hh
Confidence 3468999999999999999852 3455555 3 333444332 568899999876 77754 9999988 46
Q ss_pred ccccch--HHHHHHHHhhCCCCeEEEEEeCCCCC---CChh-------HHH-----------hHHHHHHHHHhcCcEEEE
Q 010274 291 DWLQRD--GILLLELDRLLRPGGYFVYSSPEAYA---HDPE-------NRR-----------IWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 291 ~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~---~~~e-------~~~-----------~~~~l~~ll~~~Gf~~v~ 347 (514)
|+.++. ..+|+++.++|||||+|++.+..... .... +.. ..+++.++++++||+.++
T Consensus 270 h~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~ 349 (364)
T 3p9c_A 270 HDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVK 349 (364)
T ss_dssp GGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEE
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEE
Confidence 655443 57999999999999999997642211 0000 000 124788999999999887
Q ss_pred Eecc
Q 010274 348 KKDQ 351 (514)
Q Consensus 348 ~~~~ 351 (514)
....
T Consensus 350 ~~~~ 353 (364)
T 3p9c_A 350 STYI 353 (364)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 6543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.9e-09 Score=102.44 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=71.7
Q ss_pred CeEEEECCCCchHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCC-CCCC--CCCceEEEec
Q 010274 217 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LPYP--SRSFELAHCS 286 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~-----~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~-lp~~--~~sFDlV~~s 286 (514)
.+|||||||+|..+..|+.. .|+++|+++..+..+.... .+.+. ++.+..+|+.+ ++.. .++||+|++.
T Consensus 65 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d 143 (248)
T 3tfw_A 65 KRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENL-QLAGVDQRVTLREGPALQSLESLGECPAFDLIFID 143 (248)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHH-HHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEEC
T ss_pred CEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEEC
Confidence 58999999999999999853 5788888777666555333 33343 47888888654 3322 3489999975
Q ss_pred ccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 287 ~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
. ...+...++.++.++|||||++++...
T Consensus 144 ~----~~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 144 A----DKPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp S----CGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred C----chHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 4 244556799999999999999998664
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.98 E-value=2.5e-09 Score=109.67 Aligned_cols=128 Identities=7% Similarity=0.018 Sum_probs=86.6
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC---CeEEEeecCCCCCC----CCCCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRLPY----PSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~---~~~~~~~d~~~lp~----~~~sFDlV~~s 286 (514)
..+|||+|||+|.++..++. ..|+++|+++.++..+..+.... +. ++.+..+|+..+.. .+++||+|++.
T Consensus 154 ~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~-gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~d 232 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLA-GLEQAPIRWICEDAMKFIQREERRGSTYDIILTD 232 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHH-TCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred CCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHc-CCCccceEEEECcHHHHHHHHHhcCCCceEEEEC
Confidence 35899999999999999884 46888888888776666444333 43 37888888655421 14689999984
Q ss_pred cc---------ccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 287 RC---------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 287 ~~---------~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
.- +.++..+...++.++.++|+|||+|++..........+ ...+.+.+.++++|+++.
T Consensus 233 PP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~--~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 233 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFY--SMHELMRETMRGAGGVVA 299 (332)
T ss_dssp CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHH--HHHHHHHHHTTTSCSEEE
T ss_pred CccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHH--HHHHHHHHHHHHcCCeEE
Confidence 21 12234455779999999999999988766443222211 122344556778898765
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.5e-09 Score=110.09 Aligned_cols=96 Identities=11% Similarity=0.067 Sum_probs=72.8
Q ss_pred CCeEEEECCCCchHHHHHhc--CC---CccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HD---IIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~---V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
..+|||||||+|.++..++. .. |+++|+++..+..+..+ +...+. ++.+..+|....+.++++||+|++.. .
T Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~-~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~-~ 153 (317)
T 1dl5_A 76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN-VERLGIENVIFVCGDGYYGVPEFSPYDVIFVTV-G 153 (317)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEESCGGGCCGGGCCEEEEEECS-B
T ss_pred cCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCeEEEECChhhccccCCCeEEEEEcC-C
Confidence 36899999999999999884 23 88898887776555533 333343 57888888877655567899999887 5
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
++++. .++.++|||||+++++...
T Consensus 154 ~~~~~------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 154 VDEVP------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp BSCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred HHHHH------HHHHHhcCCCcEEEEEECC
Confidence 66665 5788999999999997643
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.97 E-value=6.1e-10 Score=106.54 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=71.3
Q ss_pred CeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCC-CCC-C----CCCceEE
Q 010274 217 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LPY-P----SRSFELA 283 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~-lp~-~----~~sFDlV 283 (514)
.+|||||||+|..+..|+. ..|+++|+++..+..+..+.. ..+. ++.+..+|+.+ ++. . .++||+|
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V 138 (221)
T 3u81_A 60 SLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLN-FAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV 138 (221)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHH-HcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence 5899999999999999985 357888888777665553333 3343 37888888533 332 1 2689999
Q ss_pred EecccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 284 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 284 ~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
++.. ..++..+...++.++ ++|||||++++.+.
T Consensus 139 ~~d~-~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~ 171 (221)
T 3u81_A 139 FLDH-WKDRYLPDTLLLEKC-GLLRKGTVLLADNV 171 (221)
T ss_dssp EECS-CGGGHHHHHHHHHHT-TCCCTTCEEEESCC
T ss_pred EEcC-CcccchHHHHHHHhc-cccCCCeEEEEeCC
Confidence 9876 355555555677777 99999999998654
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.2e-09 Score=102.33 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=83.9
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+|||+|||+|.++..++. ..++++|+++..+..+..+.+ ..+ .++.+...|..+..+++++||+|++.
T Consensus 92 ~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~----- 165 (248)
T 2yvl_A 92 EKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLK-KFNLGKNVKFFNVDFKDAEVPEGIFHAAFVD----- 165 (248)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHH-HTTCCTTEEEECSCTTTSCCCTTCBSEEEEC-----
T ss_pred CCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHH-HcCCCCcEEEEEcChhhcccCCCcccEEEEC-----
Confidence 35899999999999998884 467788777766655543332 234 35778888876654356789999963
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
.+++..++.++.++|||||.+++..+.. ....++...+++. |..+...
T Consensus 166 -~~~~~~~l~~~~~~L~~gG~l~~~~~~~--------~~~~~~~~~l~~~-f~~~~~~ 213 (248)
T 2yvl_A 166 -VREPWHYLEKVHKSLMEGAPVGFLLPTA--------NQVIKLLESIENY-FGNLEVV 213 (248)
T ss_dssp -SSCGGGGHHHHHHHBCTTCEEEEEESSH--------HHHHHHHHHSTTT-EEEEEEE
T ss_pred -CcCHHHHHHHHHHHcCCCCEEEEEeCCH--------HHHHHHHHHHHhh-CCcceEE
Confidence 2356678999999999999999988643 1234556666666 7655443
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-09 Score=101.80 Aligned_cols=90 Identities=12% Similarity=0.170 Sum_probs=67.7
Q ss_pred CeEEEECCCCchHHHHHhc------CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC----------------
Q 010274 217 RNVLDVGCGVASFGAYLLS------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---------------- 274 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~------~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp---------------- 274 (514)
.+|||||||+|.++..++. ..|+++|+++.. ...++.+.++|....+
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~ 92 (201)
T 2plw_A 24 KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNN 92 (201)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC-----------C
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhccccccccccch
Confidence 5899999999999999874 358889888732 1235677888877766
Q ss_pred ---------CCCCCceEEEecccccccc----cch-------HHHHHHHHhhCCCCeEEEEEeC
Q 010274 275 ---------YPSRSFELAHCSRCRIDWL----QRD-------GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 275 ---------~~~~sFDlV~~s~~~l~~~----~d~-------~~lL~el~RvLrPGG~lvis~P 318 (514)
+++++||+|+|.. .+++. .+. ..++.++.++|||||.|++...
T Consensus 93 ~~~~~~~~~~~~~~fD~v~~~~-~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 93 SVDYKLKEILQDKKIDIILSDA-AVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp HHHHHHHHHHTTCCEEEEEECC-CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhHHHHHhhcCCCcccEEEeCC-CcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 5667999999876 35542 222 2378999999999999998653
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-09 Score=106.05 Aligned_cols=119 Identities=16% Similarity=0.163 Sum_probs=81.1
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHc-------C-CCeEEEeecCCC-CC--CCCCCc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALER-------G-IPSTLGVLGTKR-LP--YPSRSF 280 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~r-------g-~~~~~~~~d~~~-lp--~~~~sF 280 (514)
..+|||||||+|.++..++. ..|+++|+++..+..+..+....+ + .++.+..+|+.. ++ +++++|
T Consensus 50 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~ 129 (246)
T 2vdv_E 50 KVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQL 129 (246)
T ss_dssp CEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCE
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccccc
Confidence 35799999999999999884 358899888877766654433320 3 367888888765 55 777899
Q ss_pred eEEEecccccccccc--------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCc
Q 010274 281 ELAHCSRCRIDWLQR--------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 343 (514)
Q Consensus 281 DlV~~s~~~l~~~~d--------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf 343 (514)
|.|+.... -.|... ...++.++.++|+|||+|++.+... ...+.+.+.+...++
T Consensus 130 d~v~~~~p-~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~--------~~~~~~~~~~~~~~~ 191 (246)
T 2vdv_E 130 SKMFFCFP-DPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVK--------DLHEWMVKHLEEHPL 191 (246)
T ss_dssp EEEEEESC-CCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCH--------HHHHHHHHHHHHSTT
T ss_pred CEEEEECC-CcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccH--------HHHHHHHHHHHhCcC
Confidence 99985431 122110 0479999999999999999965321 123344555666664
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-09 Score=103.91 Aligned_cols=95 Identities=16% Similarity=0.217 Sum_probs=70.0
Q ss_pred CeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCCCCCCC-CceEEEecccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSR-SFELAHCSRCRID 291 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~lp~~~~-sFDlV~~s~~~l~ 291 (514)
.+|||||||+|.++..++. ..|+++|+++..+..+..+.. ..+ .++.+..+|. ..++++. .||+|++.. .++
T Consensus 93 ~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~~-~~~ 169 (235)
T 1jg1_A 93 MNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLE-RAGVKNVHVILGDG-SKGFPPKAPYDVIIVTA-GAP 169 (235)
T ss_dssp CCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHH-HTTCCSEEEEESCG-GGCCGGGCCEEEEEECS-BBS
T ss_pred CEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEECCc-ccCCCCCCCccEEEECC-cHH
Confidence 5799999999999999884 578888888776655553333 333 3577777776 4455444 499999887 455
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
++. .++.++|||||+++++.+..
T Consensus 170 ~~~------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 170 KIP------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp SCC------HHHHHTEEEEEEEEEEECSS
T ss_pred HHH------HHHHHhcCCCcEEEEEEecC
Confidence 554 37899999999999988754
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.7e-09 Score=114.71 Aligned_cols=101 Identities=7% Similarity=-0.040 Sum_probs=73.4
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHH--HHHHHH----HcC---CCeEEEeecCCCC--CC--CCC
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHEN--QIQFAL----ERG---IPSTLGVLGTKRL--PY--PSR 278 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a--~~~~A~----~rg---~~~~~~~~d~~~l--p~--~~~ 278 (514)
..+|||||||+|.++..++. ..|+|+|+++..+..+ |++.++ ..| .++.+..+|.... ++ ..+
T Consensus 243 g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~~~ 322 (433)
T 1u2z_A 243 GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIP 322 (433)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGG
T ss_pred CCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccccC
Confidence 46899999999999999885 2589999998876655 333333 334 3567776654322 22 246
Q ss_pred CceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 279 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 279 sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
+||+|+++.. + +.++....|.++.++|||||.+++..+
T Consensus 323 ~FDvIvvn~~-l-~~~d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 323 QCDVILVNNF-L-FDEDLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp GCSEEEECCT-T-CCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred CCCEEEEeCc-c-ccccHHHHHHHHHHhCCCCeEEEEeec
Confidence 8999998763 3 456777889999999999999998753
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-09 Score=105.51 Aligned_cols=117 Identities=14% Similarity=0.088 Sum_probs=81.2
Q ss_pred CeEEEECCCCchHHHHHhc--------CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCC---CCCC-CCceEEE
Q 010274 217 RNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL---PYPS-RSFELAH 284 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--------~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~l---p~~~-~sFDlV~ 284 (514)
.+|||||||+|..+..|+. ..|+++|+++.++..+. ....++.+.++|.... ++.+ .+||+|+
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-----~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~ 157 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDMENITLHQGDCSDLTTFEHLREMAHPLIF 157 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGCTTEEEEECCSSCSGGGGGGSSSCSSEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-----ccCCceEEEECcchhHHHHHhhccCCCCEEE
Confidence 5899999999999988864 46889999887765443 2345688899988774 5433 4799999
Q ss_pred ecccccccccchHHHHHHHHh-hCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc--CcEEE
Q 010274 285 CSRCRIDWLQRDGILLLELDR-LLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM--CWKIV 346 (514)
Q Consensus 285 ~s~~~l~~~~d~~~lL~el~R-vLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~--Gf~~v 346 (514)
+... | .+...+|.++.| +|||||+|++.+...+ .....-..+.++++.. +|.+.
T Consensus 158 ~d~~--~--~~~~~~l~~~~r~~LkpGG~lv~~d~~~~----~~~~~~~~~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 158 IDNA--H--ANTFNIMKWAVDHLLEEGDYFIIEDMIPY----WYRYAPQLFSEYLGAFRDVLSMD 214 (236)
T ss_dssp EESS--C--SSHHHHHHHHHHHTCCTTCEEEECSCHHH----HHHHCHHHHHHHHHTTTTTEEEE
T ss_pred ECCc--h--HhHHHHHHHHHHhhCCCCCEEEEEeCccc----ccccCHHHHHHHHHhCcccEEEc
Confidence 7652 2 356779999997 9999999999653100 0000112566777776 56543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=5e-09 Score=107.98 Aligned_cols=127 Identities=17% Similarity=0.117 Sum_probs=86.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHc-----CCCeEEEeecCCCCCCCCCCceEEEe
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHC 285 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~r-----g~~~~~~~~d~~~lp~~~~sFDlV~~ 285 (514)
..++|||||||+|.++..++++ .++..|+ +.+++.|++. ..++.+..+|....|.+ .+|+|++
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl------p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~ 250 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI------PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYIL 250 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC------HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEE
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC------HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEe
Confidence 3468999999999999999853 2233332 2334444443 23588888887766655 4799999
Q ss_pred cccccccccch--HHHHHHHHhhCCCCeEEEEEeCCCC--CCChhHH---------------HhHHHHHHHHHhcCcEEE
Q 010274 286 SRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAY--AHDPENR---------------RIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 286 s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~--~~~~e~~---------------~~~~~l~~ll~~~Gf~~v 346 (514)
... +|..++. ..+|+++.++|+|||+++|.+.-.. ...+... +..++++++++++||+.+
T Consensus 251 ~~v-lh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v 329 (353)
T 4a6d_A 251 ARV-LHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDF 329 (353)
T ss_dssp ESS-GGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEE
T ss_pred eee-cccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceE
Confidence 884 6555554 5689999999999999999774211 1111111 012578899999999988
Q ss_pred EEec
Q 010274 347 SKKD 350 (514)
Q Consensus 347 ~~~~ 350 (514)
+...
T Consensus 330 ~v~~ 333 (353)
T 4a6d_A 330 QFKK 333 (353)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 7654
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.3e-09 Score=110.36 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEe
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGV 267 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~ 267 (514)
..|.+.+.+.+.. .+..+|||||||+|.++..++.. .|+++|+++ ++..+ .+.++..+. ++.+..
T Consensus 36 ~~y~~~i~~~l~~--------~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a-~~~~~~~~l~~~v~~~~ 105 (348)
T 2y1w_A 36 GTYQRAILQNHTD--------FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHA-EVLVKSNNLTDRIVVIP 105 (348)
T ss_dssp HHHHHHHHHTGGG--------TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHH-HHHHHHTTCTTTEEEEE
T ss_pred HHHHHHHHhcccc--------CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHH-HHHHHHcCCCCcEEEEE
Confidence 3455555554432 12368999999999999998853 688999885 44333 344444453 588889
Q ss_pred ecCCCCCCCCCCceEEEecccccccc--cchHHHHHHHHhhCCCCeEEEEEe
Q 010274 268 LGTKRLPYPSRSFELAHCSRCRIDWL--QRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 268 ~d~~~lp~~~~sFDlV~~s~~~l~~~--~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+|...++++ ++||+|++... .++. +.....+.++.++|||||.+++..
T Consensus 106 ~d~~~~~~~-~~~D~Ivs~~~-~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 106 GKVEEVSLP-EQVDIIISEPM-GYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp SCTTTCCCS-SCEEEEEECCC-BTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred cchhhCCCC-CceeEEEEeCc-hhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 998888766 68999998763 4433 234568889999999999999654
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=5.1e-10 Score=117.13 Aligned_cols=92 Identities=13% Similarity=0.120 Sum_probs=73.8
Q ss_pred CCeEEEECCC------CchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCC------CC
Q 010274 216 IRNVLDVGCG------VASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP------SR 278 (514)
Q Consensus 216 ~~~VLDIGCG------tG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~------~~ 278 (514)
..+||||||| +|..+..++. ..|+++|+++.+. ....++.+.++|..++++. ++
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d~ 287 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRYG 287 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhcccC
Confidence 4689999999 6666666552 4788999988752 1345789999999988876 68
Q ss_pred CceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 279 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 279 sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
+||+|+|.. .|+..+...+|+++.|+|||||+|++.+.
T Consensus 288 sFDlVisdg--sH~~~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 288 PFDIVIDDG--SHINAHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp CEEEEEECS--CCCHHHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred CccEEEECC--cccchhHHHHHHHHHHhcCCCeEEEEEec
Confidence 999999864 45667788899999999999999999764
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.7e-09 Score=104.24 Aligned_cols=96 Identities=16% Similarity=0.206 Sum_probs=71.4
Q ss_pred CeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC---CeEEEeecCCCC-C-CCCCCceEEEec
Q 010274 217 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRL-P-YPSRSFELAHCS 286 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~---~~~~~~~d~~~l-p-~~~~sFDlV~~s 286 (514)
.+|||||||+|..+..|+. ..|+++|+++..+..+..++ .+.+. ++.+..+|+.+. + +++++||+|++.
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALF-REAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHH-HHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 4899999999999998874 36888988887776665333 33343 478888875443 2 336799999975
Q ss_pred ccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 287 ~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
.. ..+...+++++.++|||||++++..
T Consensus 137 ~~----~~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 137 VS----PMDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp CC----TTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred Cc----HHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 42 3445669999999999999999854
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.1e-09 Score=110.32 Aligned_cols=105 Identities=15% Similarity=0.139 Sum_probs=73.4
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEeecCCCC--CCCCCCceEEEe
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKRL--PYPSRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~----rg~~~~~~~~d~~~l--p~~~~sFDlV~~ 285 (514)
+++|||||||+|.++..|+.. .|+++|+++..+..+...+... ...++.+..+|.... .+++++||+|++
T Consensus 121 ~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~ 200 (334)
T 1xj5_A 121 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIV 200 (334)
T ss_dssp CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEE
T ss_pred CCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEE
Confidence 468999999999999999853 5778877776665554333221 124678888886543 234578999997
Q ss_pred ccccccc-ccc---hHHHHHHHHhhCCCCeEEEEEeCCCC
Q 010274 286 SRCRIDW-LQR---DGILLLELDRLLRPGGYFVYSSPEAY 321 (514)
Q Consensus 286 s~~~l~~-~~d---~~~lL~el~RvLrPGG~lvis~P~~~ 321 (514)
.. ..++ ... ...+++++.++|+|||.|++.....+
T Consensus 201 d~-~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~ 239 (334)
T 1xj5_A 201 DS-SDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLW 239 (334)
T ss_dssp CC-CCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred CC-CCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCcc
Confidence 54 2211 111 36799999999999999999755444
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.5e-09 Score=103.30 Aligned_cols=97 Identities=12% Similarity=0.046 Sum_probs=75.6
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||+|||+|.++..++.. .|+++|+++..+..+..+. +..+ .++.+..+|+...+. .++||+|++....
T Consensus 120 ~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~-~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~- 196 (272)
T 3a27_A 120 NEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENI-KLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH- 196 (272)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHH-HHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS-
T ss_pred CCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCEEEEECChHHcCc-cCCceEEEECCcc-
Confidence 368999999999999999842 6899999988877666443 3444 367888888877744 5789999976531
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
+...++.++.++|+|||.++++...
T Consensus 197 ----~~~~~l~~~~~~LkpgG~l~~s~~~ 221 (272)
T 3a27_A 197 ----KTHKFLDKTFEFLKDRGVIHYHETV 221 (272)
T ss_dssp ----SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ----cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 4566899999999999999987643
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-09 Score=110.26 Aligned_cols=123 Identities=10% Similarity=0.036 Sum_probs=86.5
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
.+|||||||+|.++..+++. .++++|+ + .+++.+++ ..++.+..+|... +++ .||+|+++. ++|+
T Consensus 195 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~-~~~v~~~~~d~~~-~~~--~~D~v~~~~-vlh~ 263 (358)
T 1zg3_A 195 ESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-P-----QVVGNLTG-NENLNFVGGDMFK-SIP--SADAVLLKW-VLHD 263 (358)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-H-----HHHSSCCC-CSSEEEEECCTTT-CCC--CCSEEEEES-CGGG
T ss_pred CEEEEECCCcCHHHHHHHHHCCCCeEEEecc-H-----HHHhhccc-CCCcEEEeCccCC-CCC--CceEEEEcc-cccC
Confidence 58999999999999999853 3445554 3 33333333 2347888888766 666 499999988 5777
Q ss_pred ccchH--HHHHHHHhhCCC---CeEEEEEeCCCCC--CC---hhHHH---------------hHHHHHHHHHhcCcEEEE
Q 010274 293 LQRDG--ILLLELDRLLRP---GGYFVYSSPEAYA--HD---PENRR---------------IWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 293 ~~d~~--~lL~el~RvLrP---GG~lvis~P~~~~--~~---~e~~~---------------~~~~l~~ll~~~Gf~~v~ 347 (514)
.++.. .+|+++.++||| ||++++.++.... .. ..... ..+++.++++++||+.++
T Consensus 264 ~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 343 (358)
T 1zg3_A 264 WNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYK 343 (358)
T ss_dssp SCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEE
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeE
Confidence 77766 899999999999 9999987642111 11 01000 124788999999998877
Q ss_pred Eec
Q 010274 348 KKD 350 (514)
Q Consensus 348 ~~~ 350 (514)
...
T Consensus 344 ~~~ 346 (358)
T 1zg3_A 344 ITP 346 (358)
T ss_dssp EEE
T ss_pred EEe
Confidence 544
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.2e-10 Score=124.24 Aligned_cols=100 Identities=19% Similarity=0.171 Sum_probs=77.5
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCC--CCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRL--PYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~l--p~~~~sFDlV~~s~~~l 290 (514)
+.+|||||||.|.++..|+. +.|+|+|+++..+..+. ..|.+.+ .++.+.+++++++ ++.+++||+|+|.. ++
T Consensus 67 ~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e-~~ 144 (569)
T 4azs_A 67 PLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCR-ALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS-VF 144 (569)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES-CH
T ss_pred CCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHH-HHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc-ch
Confidence 46899999999999999994 67888888887776665 4444554 6789999998887 46678999999988 79
Q ss_pred ccccchHH--HHHHHHhhCCCCeEEEEEe
Q 010274 291 DWLQRDGI--LLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 291 ~~~~d~~~--lL~el~RvLrPGG~lvis~ 317 (514)
+|++++.. .+..+.+.|+++|..++..
T Consensus 145 ehv~~~~~~~~~~~~~~tl~~~~~~~~~~ 173 (569)
T 4azs_A 145 HHIVHLHGIDEVKRLLSRLADVTQAVILE 173 (569)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred hcCCCHHHHHHHHHHHHHhccccceeeEE
Confidence 99988753 3556777788877666543
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-09 Score=104.92 Aligned_cols=97 Identities=7% Similarity=0.086 Sum_probs=72.8
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCC-C-CCCCCceEEEeccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-YPSRSFELAHCSRC 288 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~l-p-~~~~sFDlV~~s~~ 288 (514)
.+|||||||+|.++..|+. ..|+++|+++..+..+... +...+. ++.+..+|+... + ..+++||+|++..
T Consensus 73 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~- 150 (232)
T 3ntv_A 73 KNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQN-LATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA- 150 (232)
T ss_dssp CEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHH-HHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET-
T ss_pred CEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC-
Confidence 5899999999999999986 3577888887776655533 333443 588888887553 3 3367999999654
Q ss_pred ccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
...+...+++++.++|||||+|++...
T Consensus 151 ---~~~~~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 151 ---AKAQSKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp ---TSSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred ---cHHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence 244556799999999999999988543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.3e-09 Score=96.23 Aligned_cols=92 Identities=16% Similarity=0.082 Sum_probs=65.2
Q ss_pred CCeEEEECCCCchHHHHHhc-------------CCCccccCChhhhhHHHHHHHHHcCCCeEEE-eecCCCCC-------
Q 010274 216 IRNVLDVGCGVASFGAYLLS-------------HDIIAMSLAPNDVHENQIQFALERGIPSTLG-VLGTKRLP------- 274 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-------------~~V~gvdis~~dis~a~~~~A~~rg~~~~~~-~~d~~~lp------- 274 (514)
..+|||||||+|.++..++. ..|+++|+++... ...+.+. .+|....+
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----------~~~~~~~~~~d~~~~~~~~~~~~ 91 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----------LEGATFLCPADVTDPRTSQRILE 91 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----------CTTCEEECSCCTTSHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-----------CCCCeEEEeccCCCHHHHHHHHH
Confidence 36899999999999999874 3478888877321 1245666 66655432
Q ss_pred -CCCCCceEEEeccc---ccccccch-------HHHHHHHHhhCCCCeEEEEEeC
Q 010274 275 -YPSRSFELAHCSRC---RIDWLQRD-------GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 275 -~~~~sFDlV~~s~~---~l~~~~d~-------~~lL~el~RvLrPGG~lvis~P 318 (514)
+++++||+|+|... ..++..+. ..++.++.++|||||.|++.+.
T Consensus 92 ~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 92 VLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 34568999998542 12333333 4689999999999999999864
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=8.8e-09 Score=107.04 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=87.4
Q ss_pred CeEEEECCCCchHHHHHhc--C--CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--H--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~--~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
.+|||+|||+|.++..++. . .|+|+|+++.++..+.. .+...+. .+.+.++|+..+++++++||+|+++....
T Consensus 219 ~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~-n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npPyg 297 (373)
T 3tm4_A 219 GSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEM-NALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYG 297 (373)
T ss_dssp CCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHH-HHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECCCC
T ss_pred CEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH-HHHHcCCCCceEEEECChhhCCcccCCcCEEEECCCCC
Confidence 5799999999999999884 2 68899988888776663 3444455 68899999999988888999999864211
Q ss_pred ------ccccch-HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 291 ------DWLQRD-GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 291 ------~~~~d~-~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+...+. ..++.++.++| ||.+++.++. .+.+++.+++.||+..+...
T Consensus 298 ~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~-----------~~~~~~~~~~~G~~~~~~~~ 351 (373)
T 3tm4_A 298 LKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE-----------KKAIEEAIAENGFEIIHHRV 351 (373)
T ss_dssp ------CCHHHHHHHHHHHHHHHE--EEEEEEEESC-----------HHHHHHHHHHTTEEEEEEEE
T ss_pred cccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC-----------HHHHHHHHHHcCCEEEEEEE
Confidence 111122 56889999999 5655555542 23566788999999876544
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-09 Score=106.57 Aligned_cols=103 Identities=15% Similarity=0.064 Sum_probs=69.1
Q ss_pred CCeEEEECCCCchHHHHHhcC------CCccccCChhhhhHHHHHHHHHc--CC--C-----------------------
Q 010274 216 IRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALER--GI--P----------------------- 262 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~------~V~gvdis~~dis~a~~~~A~~r--g~--~----------------------- 262 (514)
..+|||+|||+|.++..++.. .|+++|+++.++..+..+..... +. .
T Consensus 52 ~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (250)
T 1o9g_A 52 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA 131 (250)
T ss_dssp CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhh
Confidence 368999999999999888743 57888888777655553322110 11 1
Q ss_pred --eE-------------EEeecCCCCCC-----CCCCceEEEecccccccc--------cchHHHHHHHHhhCCCCeEEE
Q 010274 263 --ST-------------LGVLGTKRLPY-----PSRSFELAHCSRCRIDWL--------QRDGILLLELDRLLRPGGYFV 314 (514)
Q Consensus 263 --~~-------------~~~~d~~~lp~-----~~~sFDlV~~s~~~l~~~--------~d~~~lL~el~RvLrPGG~lv 314 (514)
+. +..+|...... ..++||+|+|+...+... .....++.++.++|||||+++
T Consensus 132 ~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 211 (250)
T 1o9g_A 132 RRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIA 211 (250)
T ss_dssp HHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred hhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEE
Confidence 33 77777665321 345899999875322211 223579999999999999999
Q ss_pred EEeC
Q 010274 315 YSSP 318 (514)
Q Consensus 315 is~P 318 (514)
++..
T Consensus 212 ~~~~ 215 (250)
T 1o9g_A 212 VTDR 215 (250)
T ss_dssp EEES
T ss_pred EeCc
Confidence 9543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.7e-09 Score=101.86 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=72.1
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHc-----CCCeEEEeecCCCCCCCCCCceEEEe
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~r-----g~~~~~~~~d~~~lp~~~~sFDlV~~ 285 (514)
..+|||||||+|.++..++. ..|+++|+++..+..+..+..... ..++.+..+|....+..+++||+|++
T Consensus 78 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~ 157 (226)
T 1i1n_A 78 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHV 157 (226)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEEE
Confidence 35899999999999998873 368888888877765553333221 23678888887766555678999998
Q ss_pred cccccccccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 286 s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
... +++ ++.++.++|||||+++++.+.
T Consensus 158 ~~~-~~~------~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 158 GAA-APV------VPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp CSB-BSS------CCHHHHHTEEEEEEEEEEESC
T ss_pred CCc-hHH------HHHHHHHhcCCCcEEEEEEec
Confidence 773 433 346889999999999998764
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.89 E-value=8.7e-09 Score=100.38 Aligned_cols=119 Identities=14% Similarity=0.070 Sum_probs=89.4
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
.+|||||||+|.++..++.. .|+++|+++..+..+..+. +..+. .+.+..+|......+++.||+|+.... .
T Consensus 23 ~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~-~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm-G 100 (230)
T 3lec_A 23 ARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNV-SEHGLTSKIDVRLANGLSAFEEADNIDTITICGM-G 100 (230)
T ss_dssp EEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHH-HHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE-C
T ss_pred CEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEECchhhccccccccCEEEEeCC-c
Confidence 58999999999999999853 5889999988887776444 34444 478888887766655457999875441 1
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
. .-...++.+..+.|+++|+|+++.... .+.+.+.+.+.||.++...
T Consensus 101 g--~lI~~IL~~~~~~l~~~~~lIlqp~~~----------~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 101 G--RLIADILNNDIDKLQHVKTLVLQPNNR----------EDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp H--HHHHHHHHHTGGGGTTCCEEEEEESSC----------HHHHHHHHHHTTEEEEEEE
T ss_pred h--HHHHHHHHHHHHHhCcCCEEEEECCCC----------hHHHHHHHHHCCCEEEEEE
Confidence 1 223568889999999999999876321 4578899999999988765
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.6e-09 Score=103.52 Aligned_cols=97 Identities=14% Similarity=0.080 Sum_probs=72.5
Q ss_pred CCeEEEECCCCchHHHHHhc--C-------CCccccCChhhhhHHHHHHHHHc-----CCCeEEEeecCCCCC----CCC
Q 010274 216 IRNVLDVGCGVASFGAYLLS--H-------DIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLP----YPS 277 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~-------~V~gvdis~~dis~a~~~~A~~r-----g~~~~~~~~d~~~lp----~~~ 277 (514)
..+|||||||+|.++..++. . .|+++|+++..+..+..+..... ..++.+..+|..... ...
T Consensus 81 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 160 (227)
T 2pbf_A 81 GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKEL 160 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccC
Confidence 36899999999999998874 2 67888888777665554433332 246788888877654 456
Q ss_pred CCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
++||+|++... +++ ++.++.++|||||++++..+.
T Consensus 161 ~~fD~I~~~~~-~~~------~~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 161 GLFDAIHVGAS-ASE------LPEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp CCEEEEEECSB-BSS------CCHHHHHHEEEEEEEEEEEEE
T ss_pred CCcCEEEECCc-hHH------HHHHHHHhcCCCcEEEEEEcc
Confidence 78999998773 544 358889999999999997753
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.88 E-value=3e-09 Score=102.02 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=71.5
Q ss_pred CCeEEEECCCCchHHHHHhc----------CCCccccCChhhhhHHHHHHHHHc-----CCCeEEEeecCCCCCCCC-CC
Q 010274 216 IRNVLDVGCGVASFGAYLLS----------HDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPS-RS 279 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----------~~V~gvdis~~dis~a~~~~A~~r-----g~~~~~~~~d~~~lp~~~-~s 279 (514)
..+|||||||+|.++..++. ..|+++|+++..+..+..+..... ..++.+...|... ++++ ++
T Consensus 85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~ 163 (227)
T 1r18_A 85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNAP 163 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGCS
T ss_pred CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcCCC
Confidence 35899999999999988874 268889888877766654433322 2467788888765 4444 78
Q ss_pred ceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 280 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 280 FDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
||+|++.. .++++ +.++.++|||||++++....
T Consensus 164 fD~I~~~~-~~~~~------~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 164 YNAIHVGA-AAPDT------PTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp EEEEEECS-CBSSC------CHHHHHTEEEEEEEEEEESC
T ss_pred ccEEEECC-chHHH------HHHHHHHhcCCCEEEEEEec
Confidence 99999877 45544 37899999999999998754
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.8e-09 Score=102.14 Aligned_cols=96 Identities=10% Similarity=0.155 Sum_probs=70.3
Q ss_pred CeEEEECCCCchHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCC-CCCCCCceEEEeccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-PYPSRSFELAHCSRC 288 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~-----~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~l-p~~~~sFDlV~~s~~ 288 (514)
.+|||||||+|..+..|+.. .|+++|+++..+..+..+.. ..+. .+.+..+|..+. +..++ ||+|++...
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~ 135 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLH-DNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD 135 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC
Confidence 58999999999999999843 57788887776655553333 2333 467888876543 54446 999997632
Q ss_pred ccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
..+...+++++.++|||||++++...
T Consensus 136 ----~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 136 ----VFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp ----TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred ----hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 34567899999999999999998653
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.7e-09 Score=101.59 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=70.5
Q ss_pred CeEEEECCCCchHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCC-C-CC---CCCceEEE
Q 010274 217 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-YP---SRSFELAH 284 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~-----~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~l-p-~~---~~sFDlV~ 284 (514)
.+|||||||+|.++..++.. .|+++|+++..+..+..+. ...+. .+.+..+|.... + ++ .++||+|+
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~ 138 (223)
T 3duw_A 60 RNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNI-ERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF 138 (223)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred CEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence 58999999999999999853 5778888777665555333 33343 478888886432 1 11 25799999
Q ss_pred ecccccccccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 285 ~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
+... ......++.++.++|||||++++..+.
T Consensus 139 ~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 139 IDAD----KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp ECSC----GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred EcCC----cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 7652 334567999999999999999986653
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-08 Score=100.52 Aligned_cols=119 Identities=12% Similarity=0.038 Sum_probs=88.3
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
.+|||||||+|.++..|+.. .|+++|+++..+..+..+. +..+. .+.+..+|......++..||+|+.... .
T Consensus 23 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~-~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm-G 100 (244)
T 3gnl_A 23 ERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQV-RSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM-G 100 (244)
T ss_dssp EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHH-HHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE-C
T ss_pred CEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCceEEEEecchhhccCccccccEEEEeCC-c
Confidence 58999999999999999853 5889999988887776444 44454 378888887666544446999886541 1
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
. .-...++.+..+.|+++|+|+++... ..+.+++.+.+.||.++...
T Consensus 101 g--~lI~~IL~~~~~~L~~~~~lIlq~~~----------~~~~lr~~L~~~Gf~i~~E~ 147 (244)
T 3gnl_A 101 G--TLIRTILEEGAAKLAGVTKLILQPNI----------AAWQLREWSEQNNWLITSEA 147 (244)
T ss_dssp H--HHHHHHHHHTGGGGTTCCEEEEEESS----------CHHHHHHHHHHHTEEEEEEE
T ss_pred h--HHHHHHHHHHHHHhCCCCEEEEEcCC----------ChHHHHHHHHHCCCEEEEEE
Confidence 1 22356889999999999999987532 14578899999999987654
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.86 E-value=3.9e-10 Score=109.97 Aligned_cols=134 Identities=10% Similarity=0.100 Sum_probs=78.0
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCC---CCC---CCCceEE
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL---PYP---SRSFELA 283 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~l---p~~---~~sFDlV 283 (514)
..+|||+|||+|.++..++. ..|+++|+++.++..+..+. ...+. .+.+..+|+... +++ +++||+|
T Consensus 66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 66 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNV-EQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHH-HHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 46899999999999888773 47889999888877666443 33444 378888886552 444 2689999
Q ss_pred Eecccccccc--------------cchHHHHHHHHhhCCCCeEEEEEeC-----------CCCCCCh-hHHHhHHHHHHH
Q 010274 284 HCSRCRIDWL--------------QRDGILLLELDRLLRPGGYFVYSSP-----------EAYAHDP-ENRRIWNAMYDL 337 (514)
Q Consensus 284 ~~s~~~l~~~--------------~d~~~lL~el~RvLrPGG~lvis~P-----------~~~~~~~-e~~~~~~~l~~l 337 (514)
+|+...++.. .....++.++.|+|||||.+.+... ..+.... ........+.++
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 224 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEE 224 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHH
Confidence 9874222111 0112356677777777776654321 0000000 000012467788
Q ss_pred HHhcCcEEEEEec
Q 010274 338 LKSMCWKIVSKKD 350 (514)
Q Consensus 338 l~~~Gf~~v~~~~ 350 (514)
++++||..+....
T Consensus 225 l~~~Gf~~v~~~~ 237 (254)
T 2h00_A 225 LRIQGVPKVTYTE 237 (254)
T ss_dssp HHHTTCSEEEEEE
T ss_pred HHHcCCCceEEEE
Confidence 8999997766543
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-09 Score=108.12 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=68.7
Q ss_pred CCCeEEEECCCC--chHHHHHh-----cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC----CC--CCCce
Q 010274 215 NIRNVLDVGCGV--ASFGAYLL-----SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP----YP--SRSFE 281 (514)
Q Consensus 215 ~~~~VLDIGCGt--G~~a~~La-----~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp----~~--~~sFD 281 (514)
.+++|||||||+ +.....++ +..|+++|.++.++..+..........++.++++|+.+++ .+ .++||
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 457899999997 33334333 3568888877776654442221111124788899887642 11 24555
Q ss_pred -----EEEecccccccccch---HHHHHHHHhhCCCCeEEEEEeC
Q 010274 282 -----LAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 282 -----lV~~s~~~l~~~~d~---~~lL~el~RvLrPGG~lvis~P 318 (514)
.|+++. ++||+++. ..++.++.++|+|||+|+++.-
T Consensus 158 ~~~p~av~~~a-vLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~ 201 (277)
T 3giw_A 158 LTRPVALTVIA-IVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIG 201 (277)
T ss_dssp TTSCCEEEEES-CGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred cCCcchHHhhh-hHhcCCchhhHHHHHHHHHHhCCCCcEEEEEec
Confidence 455444 79999884 6799999999999999999863
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.85 E-value=9.5e-09 Score=109.42 Aligned_cols=125 Identities=20% Similarity=0.210 Sum_probs=86.1
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCC--CCCCCceEEEe--
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHC-- 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp--~~~~sFDlV~~-- 285 (514)
..+|||+|||+|..+..++. ..|+++|+++..+.... +.+...|. ++.+..+|...++ +++++||+|++
T Consensus 260 g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~-~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~ 338 (450)
T 2yxl_A 260 GETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLK-DFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDA 338 (450)
T ss_dssp TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEEC
T ss_pred cCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHH-HHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEcC
Confidence 35899999999999999884 46888888877665554 33333354 6788888887776 55578999995
Q ss_pred ---cccccccccch----------------HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc-CcEE
Q 010274 286 ---SRCRIDWLQRD----------------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKI 345 (514)
Q Consensus 286 ---s~~~l~~~~d~----------------~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~-Gf~~ 345 (514)
...+++..++. ..+|.++.++|||||++++++..... .++ -..+..++++. +|+.
T Consensus 339 Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~--~en---e~~v~~~l~~~~~~~~ 413 (450)
T 2yxl_A 339 PCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFK--EEN---EKNIRWFLNVHPEFKL 413 (450)
T ss_dssp CCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG--GGT---HHHHHHHHHHCSSCEE
T ss_pred CCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh--hhH---HHHHHHHHHhCCCCEE
Confidence 22233333332 46899999999999999998865431 121 23455666665 6765
Q ss_pred E
Q 010274 346 V 346 (514)
Q Consensus 346 v 346 (514)
+
T Consensus 414 ~ 414 (450)
T 2yxl_A 414 V 414 (450)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.3e-08 Score=103.79 Aligned_cols=128 Identities=11% Similarity=0.040 Sum_probs=89.8
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCC-CCC-CCCCceEEEeccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR-LPY-PSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~-lp~-~~~sFDlV~~s~~ 288 (514)
+.+|||+| |+|.++..++. ..|+++|+++.++..+..+ +...+. ++.+..+|+.. +|. .+++||+|+++.
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~-~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~- 249 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKA-ANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP- 249 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHH-HHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC-
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCEEEEEChhhhhchhhccCCccEEEECC-
Confidence 46899999 99999988873 3688998888877666533 334455 68899999877 664 356899999875
Q ss_pred ccccccchHHHHHHHHhhCCCCeE-EEEEeCCCCCCChhHHHhHHHHHHHHH-hcCcEEEEEecc
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGY-FVYSSPEAYAHDPENRRIWNAMYDLLK-SMCWKIVSKKDQ 351 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~-lvis~P~~~~~~~e~~~~~~~l~~ll~-~~Gf~~v~~~~~ 351 (514)
..+.. ....++.++.++|||||. ++++... .......|..+.++++ +.||........
T Consensus 250 p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~~----~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 309 (373)
T 2qm3_A 250 PETLE-AIRAFVGRGIATLKGPRCAGYFGITR----RESSLDKWREIQKLLLNEFNVVITDIIRN 309 (373)
T ss_dssp CSSHH-HHHHHHHHHHHTBCSTTCEEEEEECT----TTCCHHHHHHHHHHHHHTSCCEEEEEEEE
T ss_pred CCchH-HHHHHHHHHHHHcccCCeEEEEEEec----CcCCHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 23222 247799999999999994 4555432 0111223566778887 899987655443
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.83 E-value=6e-09 Score=106.16 Aligned_cols=98 Identities=13% Similarity=0.111 Sum_probs=70.0
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHc-----------CCCeEEEeecCCCC--CCCC
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-----------GIPSTLGVLGTKRL--PYPS 277 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~r-----------g~~~~~~~~d~~~l--p~~~ 277 (514)
..+|||+|||+|.++..++. ..|+++|+++..+..+..+..... ..++.+..+|.... ++++
T Consensus 106 g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~ 185 (336)
T 2b25_A 106 GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKS 185 (336)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-----
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccCC
Confidence 36899999999999998874 458889888877766664443311 13678888888776 4666
Q ss_pred CCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
++||+|++.. .++..++.++.++|||||.|++..+.
T Consensus 186 ~~fD~V~~~~------~~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 186 LTFDAVALDM------LNPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp --EEEEEECS------SSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred CCeeEEEECC------CCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 7899999753 23344899999999999999987753
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-08 Score=96.65 Aligned_cols=112 Identities=12% Similarity=0.047 Sum_probs=75.7
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCC-----------CCCceE
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-----------SRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~-----------~~sFDl 282 (514)
..+|||+|||+|.++..+++ ..|+++|+++... ..++.+.++|+...+.. .++||+
T Consensus 26 g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~-----------~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~ 94 (191)
T 3dou_A 26 GDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE-----------IAGVRFIRCDIFKETIFDDIDRALREEGIEKVDD 94 (191)
T ss_dssp TCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC-----------CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEE
T ss_pred CCEEEEEeecCCHHHHHHHHcCCcEEEEecccccc-----------CCCeEEEEccccCHHHHHHHHHHhhcccCCcceE
Confidence 46899999999999999985 4688998887421 23578888887765421 148999
Q ss_pred EEecccccc----cccc-------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEE
Q 010274 283 AHCSRCRID----WLQR-------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 283 V~~s~~~l~----~~~d-------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~ 348 (514)
|+|... .. +..+ ...++.++.++|||||.|++..-.. .. ...+...++. .|..+..
T Consensus 95 Vlsd~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~----~~----~~~~~~~l~~-~F~~v~~ 161 (191)
T 3dou_A 95 VVSDAM-AKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG----DM----TNDFIAIWRK-NFSSYKI 161 (191)
T ss_dssp EEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS----TH----HHHHHHHHGG-GEEEEEE
T ss_pred EecCCC-cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC----CC----HHHHHHHHHH-hcCEEEE
Confidence 998531 11 1111 2457899999999999999865221 11 2355566655 4766543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.4e-09 Score=106.00 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=68.0
Q ss_pred CCeEEEECCCCchHHHHHhc-CCCccccCChhhhhHHHHHH--HHHcCCCeEEE--eecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-HDIIAMSLAPNDVHENQIQF--ALERGIPSTLG--VLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-~~V~gvdis~~dis~a~~~~--A~~rg~~~~~~--~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||||||+|.++..+++ ..|+++|+++ +...+..+. ....+.++.+. ++|+..++ +++||+|+|...
T Consensus 83 g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~~-- 157 (276)
T 2wa2_A 83 KGTVVDLGCGRGSWSYYAASQPNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDIG-- 157 (276)
T ss_dssp CEEEEEESCTTCHHHHHHHTSTTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECCC--
T ss_pred CCEEEEeccCCCHHHHHHHHcCCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECCC--
Confidence 46899999999999999986 4789999987 422110000 00001156777 88888776 679999998763
Q ss_pred ccccc----hH---HHHHHHHhhCCCCe--EEEEEeCC
Q 010274 291 DWLQR----DG---ILLLELDRLLRPGG--YFVYSSPE 319 (514)
Q Consensus 291 ~~~~d----~~---~lL~el~RvLrPGG--~lvis~P~ 319 (514)
++..+ .. .+|.++.++||||| .|++....
T Consensus 158 ~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 158 ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 33222 11 37899999999999 99986543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-09 Score=102.49 Aligned_cols=97 Identities=14% Similarity=0.127 Sum_probs=70.5
Q ss_pred CeEEEECCCCchHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCC-C-CC----CCCceEE
Q 010274 217 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-YP----SRSFELA 283 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~-----~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~l-p-~~----~~sFDlV 283 (514)
.+|||||||+|.++..|+.. .|+++|+++..+..+... +...+. .+.+..+|.... + +. .++||+|
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v 144 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEY-WEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI 144 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred CEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHH-HHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence 58999999999999999853 577888877766555533 333343 378888876432 2 11 1689999
Q ss_pred EecccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 284 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 284 ~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
++.. ...+...++.++.++|||||+|++...
T Consensus 145 ~~~~----~~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 145 YIDA----DKANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp EECS----CGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EECC----CHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 9544 244567799999999999999998764
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.3e-08 Score=96.03 Aligned_cols=118 Identities=13% Similarity=0.041 Sum_probs=86.4
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCC-CCCCCCCCceEEEecccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTK-RLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~-~lp~~~~sFDlV~~s~~~ 289 (514)
.+|||||||+|.++..++.. .|+++|+++..+..+..+ ++..+. .+.+..+|.. .++.. ..||+|+.+..
T Consensus 17 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N-~~~~gl~~~i~~~~~d~l~~l~~~-~~~D~IviaG~- 93 (225)
T 3kr9_A 17 AILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKN-VEAHGLKEKIQVRLANGLAAFEET-DQVSVITIAGM- 93 (225)
T ss_dssp EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHH-HHHTTCTTTEEEEECSGGGGCCGG-GCCCEEEEEEE-
T ss_pred CEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCceEEEEECchhhhcccC-cCCCEEEEcCC-
Confidence 58999999999999999853 588999998888777644 444454 4788888863 44321 26999886541
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
. -.-...++.+....|+++|+|+++... ....+.+.+.+.||.++...
T Consensus 94 G--g~~i~~Il~~~~~~L~~~~~lVlq~~~----------~~~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 94 G--GRLIARILEEGLGKLANVERLILQPNN----------REDDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp C--HHHHHHHHHHTGGGCTTCCEEEEEESS----------CHHHHHHHHHHTTEEEEEEE
T ss_pred C--hHHHHHHHHHHHHHhCCCCEEEEECCC----------CHHHHHHHHHHCCCEEEEEE
Confidence 1 112356899999999999999986531 14578889999999988764
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.82 E-value=6.1e-09 Score=103.44 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=83.3
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCC----CCCCceEEEe
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY----PSRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~----~~~sFDlV~~ 285 (514)
..+|||+|||+|..+..++. ..|+++|+++..+..+. +.++..+. ++.+...|...++. .+++||+|++
T Consensus 84 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~-~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 162 (274)
T 3ajd_A 84 DDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALK-SNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILL 162 (274)
T ss_dssp TCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred cCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHH-HHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEE
Confidence 35899999999999988874 46888988887766554 33334454 67888888766653 2578999997
Q ss_pred cc-----cccc------------cccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHh-cCcEEE
Q 010274 286 SR-----CRID------------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS-MCWKIV 346 (514)
Q Consensus 286 s~-----~~l~------------~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~-~Gf~~v 346 (514)
.. ..++ .......++.++.++|||||++++++........+ ..+..++++ .+|+++
T Consensus 163 d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene-----~~v~~~l~~~~~~~~~ 236 (274)
T 3ajd_A 163 DAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENE-----EVIKYILQKRNDVELI 236 (274)
T ss_dssp EECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSH-----HHHHHHHHHCSSEEEE
T ss_pred cCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhH-----HHHHHHHHhCCCcEEe
Confidence 51 1111 11344679999999999999999988654322211 234455544 356554
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-09 Score=106.33 Aligned_cols=97 Identities=10% Similarity=0.017 Sum_probs=74.0
Q ss_pred CeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCC-CCC-----CCCceEE
Q 010274 217 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-PYP-----SRSFELA 283 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~l-p~~-----~~sFDlV 283 (514)
++|||||||+|..+..|+. ..|+++|+++..+..+..++ ...+. ++.+..+|+... +.. +++||+|
T Consensus 62 ~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 62 KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYW-REAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp SEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHH-HHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred CEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 5899999999999999884 36899999998887666443 34443 578888886543 221 4789999
Q ss_pred EecccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 284 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 284 ~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
++... ..+...+++++.++|||||++++...
T Consensus 141 ~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 141 FIDAD----KTNYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp EEESC----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEcCC----hHHhHHHHHHHHHhcCCCeEEEEECC
Confidence 97642 34556799999999999999998654
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.81 E-value=2.5e-08 Score=93.44 Aligned_cols=110 Identities=10% Similarity=0.080 Sum_probs=74.3
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
..+|||+|||+|.++..++.. .|+++|+++. +++.|+++..++.+..+|...++ ++||+|+++. .+++
T Consensus 52 ~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~-----~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~-p~~~ 122 (200)
T 1ne2_A 52 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPD-----AIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNP-PFGS 122 (200)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHH-----HHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECC-CC--
T ss_pred CCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHH-----HHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECC-Cchh
Confidence 368999999999999998854 3667766554 44555555447788888888765 6899999876 4555
Q ss_pred ccc--hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEE
Q 010274 293 LQR--DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 293 ~~d--~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~ 347 (514)
..+ ...++.++.++| |+.+++..+. .+..+.++++..| .+..
T Consensus 123 ~~~~~~~~~l~~~~~~~--g~~~~~~~~~----------~~~~~~~~~~~~g-~~~~ 166 (200)
T 1ne2_A 123 VVKHSDRAFIDKAFETS--MWIYSIGNAK----------ARDFLRREFSARG-DVFR 166 (200)
T ss_dssp -----CHHHHHHHHHHE--EEEEEEEEGG----------GHHHHHHHHHHHE-EEEE
T ss_pred ccCchhHHHHHHHHHhc--CcEEEEEcCc----------hHHHHHHHHHHCC-CEEE
Confidence 543 256899999999 5544443321 1345677888888 5443
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=7.6e-09 Score=104.22 Aligned_cols=125 Identities=10% Similarity=0.075 Sum_probs=79.4
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHH--H--cCCCeEEEeecCCC-CCCCCCCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFAL--E--RGIPSTLGVLGTKR-LPYPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~--~--rg~~~~~~~~d~~~-lp~~~~sFDlV~~s 286 (514)
+.+|||||||+|.++..++.. .|+++|+++..+..+...+.. . ...++.+..+|... ++..+++||+|++.
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d 170 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID 170 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEc
Confidence 368999999999999999853 567887777666555433322 1 13467888888544 34345789999975
Q ss_pred cccccccc-----chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 287 RCRIDWLQ-----RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 287 ~~~l~~~~-----d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
. ..++.. ....+++++.++|||||.+++.....+... .....+.+.+++. |..+
T Consensus 171 ~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~----~~~~~~~~~l~~~-F~~v 229 (296)
T 1inl_A 171 S-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDI----GWFKLAYRRISKV-FPIT 229 (296)
T ss_dssp C-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTH----HHHHHHHHHHHHH-CSEE
T ss_pred C-CCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCH----HHHHHHHHHHHHH-CCce
Confidence 3 222121 226799999999999999999765443211 2234444555555 4333
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.80 E-value=5e-09 Score=104.13 Aligned_cols=98 Identities=15% Similarity=0.134 Sum_probs=67.5
Q ss_pred CCeEEEECCCCchHHHHHhc-CCCccccCChhhhhHHHHH-H-HHHcCCCeEEE--eecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-HDIIAMSLAPNDVHENQIQ-F-ALERGIPSTLG--VLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-~~V~gvdis~~dis~a~~~-~-A~~rg~~~~~~--~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||||||+|.++..+++ ..|+++|+++ +...+..+ . ....+.++.+. ++|+..++ +++||+|+|...
T Consensus 75 g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~~-- 149 (265)
T 2oxt_A 75 TGRVVDLGCGRGGWSYYAASRPHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDVG-- 149 (265)
T ss_dssp CEEEEEESCTTSHHHHHHHTSTTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECCC--
T ss_pred CCEEEEeCcCCCHHHHHHHHcCcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeCc--
Confidence 35899999999999999886 4789999987 32111000 0 00011146777 78888776 679999998763
Q ss_pred ccccch----H---HHHHHHHhhCCCCe--EEEEEeC
Q 010274 291 DWLQRD----G---ILLLELDRLLRPGG--YFVYSSP 318 (514)
Q Consensus 291 ~~~~d~----~---~lL~el~RvLrPGG--~lvis~P 318 (514)
++..+. . .+|.++.++||||| .|++...
T Consensus 150 ~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 150 ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 332221 1 37899999999999 9998663
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.79 E-value=5.7e-09 Score=100.30 Aligned_cols=96 Identities=13% Similarity=0.181 Sum_probs=71.0
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCC-CCC--CCCceEEEecc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-PYP--SRSFELAHCSR 287 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~l-p~~--~~sFDlV~~s~ 287 (514)
.+|||||||+|.++..++. ..|+++|+++..+..+.... ...+. ++.+..+|.... +.. +++||+|++..
T Consensus 56 ~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 134 (233)
T 2gpy_A 56 ARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHV-KALGLESRIELLFGDALQLGEKLELYPLFDVLFIDA 134 (233)
T ss_dssp SEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHH-HHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEG
T ss_pred CEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECC
Confidence 5899999999999998884 35778887776665554332 23343 477888886653 322 57899999765
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
. . .+...++.++.++|||||++++.+
T Consensus 135 ~-~---~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 135 A-K---GQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp G-G---SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred C-H---HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 3 2 356789999999999999999975
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.79 E-value=5.8e-08 Score=91.10 Aligned_cols=121 Identities=10% Similarity=0.028 Sum_probs=82.1
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
..+|||+|||+|.++..++.. .|+++|+++..+..+.. .+...+.++.+..+|...++ ++||+|+++.. .++
T Consensus 50 ~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p-~~~ 124 (207)
T 1wy7_A 50 GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIE-NLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPP-FGS 124 (207)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HTGGGTTSEEEEESCGGGCC---CCCSEEEECCC-CSS
T ss_pred cCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHcCCCEEEEECchHHcC---CCCCEEEEcCC-Ccc
Confidence 468999999999999999853 47788777766644442 22233447888888888765 48999998763 333
Q ss_pred cc--chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 293 LQ--RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 293 ~~--d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
.. ....++.++.++| ||.+++..+. . ...+.+.+.+++.||++......
T Consensus 125 ~~~~~~~~~l~~~~~~l--~~~~~~~~~~-----~---~~~~~~~~~l~~~g~~~~~~~~~ 175 (207)
T 1wy7_A 125 QRKHADRPFLLKAFEIS--DVVYSIHLAK-----P---EVRRFIEKFSWEHGFVVTHRLTT 175 (207)
T ss_dssp SSTTTTHHHHHHHHHHC--SEEEEEEECC-----H---HHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccCCchHHHHHHHHHhc--CcEEEEEeCC-----c---CCHHHHHHHHHHCCCeEEEEEEE
Confidence 32 2356899999999 6655554221 1 12345677889999987655443
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.79 E-value=3.5e-09 Score=107.83 Aligned_cols=105 Identities=11% Similarity=0.025 Sum_probs=67.3
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEeecCCC-CCCCCCCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKR-LPYPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~----rg~~~~~~~~d~~~-lp~~~~sFDlV~~s 286 (514)
+++|||||||+|.++..++.. .|+++|+++..+..+...+... ...++.+..+|+.. ++..+++||+|++.
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d 188 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD 188 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEc
Confidence 368999999999999999853 4667766665544333222110 12357788887654 33345789999975
Q ss_pred ccccccccch----HHHHHHHHhhCCCCeEEEEEeCCCC
Q 010274 287 RCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEAY 321 (514)
Q Consensus 287 ~~~l~~~~d~----~~lL~el~RvLrPGG~lvis~P~~~ 321 (514)
. ..++.+.. ..+++++.++|+|||.+++.....+
T Consensus 189 ~-~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~ 226 (314)
T 2b2c_A 189 S-SDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVW 226 (314)
T ss_dssp C-C-------------HHHHHHHHEEEEEEEEEECCCTT
T ss_pred C-CCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcc
Confidence 4 22222221 5789999999999999999764443
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=4.1e-09 Score=107.08 Aligned_cols=122 Identities=12% Similarity=0.092 Sum_probs=80.7
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHH-c----CCCeEEEeecCCC-CCCCCCCceEEEe
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE-R----GIPSTLGVLGTKR-LPYPSRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~-r----g~~~~~~~~d~~~-lp~~~~sFDlV~~ 285 (514)
+++|||||||+|.++..++.. .|+++|+++..+..+...+... . ..++.+..+|... ++..+++||+|++
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII 157 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEE
Confidence 468999999999999999854 4778887776665554333221 1 2467888888655 3434678999998
Q ss_pred ccccccc---cc--c--hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc
Q 010274 286 SRCRIDW---LQ--R--DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 341 (514)
Q Consensus 286 s~~~l~~---~~--d--~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~ 341 (514)
.. ..++ .+ . ...+++++.++|||||.+++.....+... ......+.+.+++.
T Consensus 158 d~-~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~---~~~~~~~~~~l~~~ 216 (314)
T 1uir_A 158 DL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTH---HRVHPVVHRTVREA 216 (314)
T ss_dssp EC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC------CHHHHHHHHHHTT
T ss_pred CC-CCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccC---HHHHHHHHHHHHHH
Confidence 65 3443 11 1 26799999999999999998653322111 12344555666665
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.77 E-value=8.8e-09 Score=102.66 Aligned_cols=125 Identities=11% Similarity=0.102 Sum_probs=82.5
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEeecCCC-CCCCCCCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKR-LPYPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~----rg~~~~~~~~d~~~-lp~~~~sFDlV~~s 286 (514)
+++|||||||+|.++..++.. .|+++|+++..+..+...+... ...++.+..+|... ++..+++||+|++.
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d 155 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD 155 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEEC
Confidence 468999999999999999853 5677777776665544332221 12457888888654 33345789999975
Q ss_pred ccccccccc----hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 287 RCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 287 ~~~l~~~~d----~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
. ..++.+. ...+++++.++|+|||.+++.....+.. ......+.+.+++. |..+
T Consensus 156 ~-~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~~~~~l~~~-F~~v 213 (275)
T 1iy9_A 156 S-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFT----PELITNVQRDVKEI-FPIT 213 (275)
T ss_dssp C-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTC----HHHHHHHHHHHHTT-CSEE
T ss_pred C-CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccc----HHHHHHHHHHHHHh-CCCe
Confidence 4 2222211 2579999999999999999976543321 22345566666666 5443
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-08 Score=103.28 Aligned_cols=105 Identities=11% Similarity=0.082 Sum_probs=70.9
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEeecCCC-CCCCCCCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKR-LPYPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~----rg~~~~~~~~d~~~-lp~~~~sFDlV~~s 286 (514)
+++|||||||+|.++..++.. .|+++|+++..+..+...+... ...++.+..+|... ++..+++||+|++.
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d 175 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITD 175 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEEC
Confidence 468999999999999999853 4677877776665444332220 13467888888654 34446789999975
Q ss_pred cccccccc----chHHHHHHHHhhCCCCeEEEEEeCCCC
Q 010274 287 RCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAY 321 (514)
Q Consensus 287 ~~~l~~~~----d~~~lL~el~RvLrPGG~lvis~P~~~ 321 (514)
. ..++.+ ....+++++.++|||||.+++.....+
T Consensus 176 ~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~ 213 (304)
T 2o07_A 176 S-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQW 213 (304)
T ss_dssp C-C-----------CHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred C-CCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 4 232221 124589999999999999999764433
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-08 Score=106.92 Aligned_cols=126 Identities=12% Similarity=0.078 Sum_probs=88.3
Q ss_pred CeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC---CeEEEeecCCC-CCC---CCCCceEEEec
Q 010274 217 RNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKR-LPY---PSRSFELAHCS 286 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~---~~~~~~~d~~~-lp~---~~~sFDlV~~s 286 (514)
.+|||+|||+|.++..++. ..|+++|+++.++..+..+. +..+. ++.+..+|+.+ ++. ...+||+|++.
T Consensus 214 ~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~-~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~D 292 (385)
T 2b78_A 214 KTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHF-EANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIID 292 (385)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHH-HHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEEC
Confidence 5899999999999999985 26899999998887777444 44444 67888888654 221 24589999974
Q ss_pred ccc--------cccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 287 RCR--------IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 287 ~~~--------l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
... .....+...++.++.++|+|||.++++....... . ...++.+...+..+|..++
T Consensus 293 PP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~-~--~~~~~~i~~~~~~~g~~~~ 357 (385)
T 2b78_A 293 PPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT-V--SQFKKQIEKGFGKQKHTYL 357 (385)
T ss_dssp CCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-H--HHHHHHHHHHHTTCCCEEE
T ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC-H--HHHHHHHHHHHHHcCCcEE
Confidence 321 1222333557888999999999999988654321 1 1234566777888888744
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5e-08 Score=97.68 Aligned_cols=156 Identities=12% Similarity=0.090 Sum_probs=104.5
Q ss_pred ccCceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhH
Q 010274 174 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHE 250 (514)
Q Consensus 174 ~~g~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~ 250 (514)
.+|-.+.|.-....|..+...-...+.+.+. .+.+|||+|||+|.++..++. ..|+++|+++..+..
T Consensus 94 E~G~~~~~D~~k~~f~~~~~~er~ri~~~~~----------~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~ 163 (278)
T 3k6r_A 94 ENGIKYKLDVAKIMFSPANVKERVRMAKVAK----------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKF 163 (278)
T ss_dssp ETTEEEEEETTTSCCCGGGHHHHHHHHHHCC----------TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHH
T ss_pred ECCEEEEEeccceEEcCCcHHHHHHHHHhcC----------CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHH
Confidence 4555666655666777776655556666553 235899999999999988873 468999999987766
Q ss_pred HHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHH
Q 010274 251 NQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR 328 (514)
Q Consensus 251 a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~ 328 (514)
+.. .++..+. .+.+..+|...++. .+.||.|++.. .+....++..+.++||+||.+.+..-..-. ....
T Consensus 164 ~~~-N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~-----p~~~~~~l~~a~~~lk~gG~ih~~~~~~e~--~~~~ 234 (278)
T 3k6r_A 164 LVE-NIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGY-----VVRTHEFIPKALSIAKDGAIIHYHNTVPEK--LMPR 234 (278)
T ss_dssp HHH-HHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECC-----CSSGGGGHHHHHHHEEEEEEEEEEEEEEGG--GTTT
T ss_pred HHH-HHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEEECC-----CCcHHHHHHHHHHHcCCCCEEEEEeeeccc--ccch
Confidence 654 4444454 36778888877764 47899998553 223345888899999999998763311000 0001
Q ss_pred HhHHHHHHHHHhcCcEEEEE
Q 010274 329 RIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 329 ~~~~~l~~ll~~~Gf~~v~~ 348 (514)
...+.++++++..|+++...
T Consensus 235 ~~~e~i~~~~~~~g~~v~~~ 254 (278)
T 3k6r_A 235 EPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp TTHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHHHHcCCcEEEE
Confidence 12456778889999976543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-08 Score=109.21 Aligned_cols=97 Identities=16% Similarity=0.202 Sum_probs=71.4
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||||||+|.++..++.. .|+++|+++ ++..+. +.++..+. ++.+..+|..+++++ ++||+|+|.. .+
T Consensus 159 ~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~-~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~-~~ 234 (480)
T 3b3j_A 159 DKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAE-VLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEP-MG 234 (480)
T ss_dssp TCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHH-HHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCC-CH
T ss_pred CCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHH-HHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeC-ch
Confidence 368999999999999988853 578888776 553333 34444453 588899998887766 5899999865 34
Q ss_pred cccc--chHHHHHHHHhhCCCCeEEEEE
Q 010274 291 DWLQ--RDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 291 ~~~~--d~~~lL~el~RvLrPGG~lvis 316 (514)
++.. +....+.++.++|||||++++.
T Consensus 235 ~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 235 YMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp HHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred HhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4443 3355777899999999999953
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.3e-08 Score=104.26 Aligned_cols=96 Identities=14% Similarity=0.163 Sum_probs=72.3
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecc--c
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSR--C 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~--~ 288 (514)
.++|||||||+|.++...++ ..|+++|.++ ++.. ..+.++..+. .+.++.++.+++.++ ++||+|+|-. .
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~-a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~ 160 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQ-AREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGY 160 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHH-HHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBT
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHH-HHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecccc
Confidence 35899999999999887774 3689999886 3433 3455666654 478888888888877 6899999721 1
Q ss_pred ccccccchHHHHHHHHhhCCCCeEEE
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGYFV 314 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~lv 314 (514)
.+.+-.....++....|+|||||.++
T Consensus 161 ~l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 161 GLLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp TBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred cccccchhhhHHHHHHhhCCCCceEC
Confidence 23334455778999999999999988
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.74 E-value=3.2e-08 Score=104.59 Aligned_cols=125 Identities=14% Similarity=0.127 Sum_probs=86.6
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC--CCCCCceEEEe----
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHC---- 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp--~~~~sFDlV~~---- 285 (514)
..+|||+|||+|..+..++. ..|+++|+++..+.... +.+...+.++.+..+|...++ +++++||+|++
T Consensus 247 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~-~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 325 (429)
T 1sqg_A 247 GEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY-DNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPC 325 (429)
T ss_dssp TCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHH-HHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCC
T ss_pred cCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCCC
Confidence 35899999999999999884 46889999887776555 344445667788888887765 55678999995
Q ss_pred c-ccccccccch----------------HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc-CcEEE
Q 010274 286 S-RCRIDWLQRD----------------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKIV 346 (514)
Q Consensus 286 s-~~~l~~~~d~----------------~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~-Gf~~v 346 (514)
+ ...+++.++. ..+|.++.++|||||++++++..... .++ -..+..++++. +|+.+
T Consensus 326 sg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~--~en---e~~v~~~l~~~~~~~~~ 399 (429)
T 1sqg_A 326 SATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP--EEN---SLQIKAFLQRTADAELC 399 (429)
T ss_dssp CCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG--GGT---HHHHHHHHHHCTTCEEC
T ss_pred CcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh--hhH---HHHHHHHHHhCCCCEEe
Confidence 2 2223333321 36899999999999999998865431 111 13445555554 56654
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=7.6e-09 Score=101.35 Aligned_cols=96 Identities=13% Similarity=0.090 Sum_probs=71.1
Q ss_pred CeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCC-C-C-----CCCCceE
Q 010274 217 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-Y-----PSRSFEL 282 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~l-p-~-----~~~sFDl 282 (514)
++|||||||+|..+..|+. ..|+++|+++..+..+.. ...+.+. ++.+..+|+... + + ++++||+
T Consensus 81 ~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~-~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 159 (247)
T 1sui_A 81 KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLP-VIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF 159 (247)
T ss_dssp CEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHH-HHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSE
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEE
Confidence 5899999999999998874 468889888877765553 3333444 477888876442 3 1 1578999
Q ss_pred EEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 283 V~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
|++... ..+...++.++.++|||||++++..
T Consensus 160 V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 160 IFVDAD----KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp EEECSC----STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEcCc----hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 997642 3455779999999999999999864
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=8e-09 Score=105.37 Aligned_cols=121 Identities=16% Similarity=0.163 Sum_probs=76.3
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEeecCCC-CCCCCCCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKR-LPYPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~----rg~~~~~~~~d~~~-lp~~~~sFDlV~~s 286 (514)
+.+|||||||+|.++..++.. .|+++|+++..+..+...+... ...++.+..+|... ++..+++||+|++.
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d 196 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD 196 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEEC
Confidence 368999999999999999853 4666766665544333221110 02357788887544 23335789999975
Q ss_pred cccccccc--c--hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc
Q 010274 287 RCRIDWLQ--R--DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 341 (514)
Q Consensus 287 ~~~l~~~~--d--~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~ 341 (514)
. ..++.+ . ...+++++.++|||||.+++.....+.. . .....+.+.+++.
T Consensus 197 ~-~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~-~---~~~~~~~~~l~~~ 250 (321)
T 2pt6_A 197 S-SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIH-V---GTIKNMIGYAKKL 250 (321)
T ss_dssp C-CCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTC-H---HHHHHHHHHHHTT
T ss_pred C-cCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccC-H---HHHHHHHHHHHHH
Confidence 4 222211 1 1679999999999999999976544321 1 2234455555555
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-08 Score=98.76 Aligned_cols=97 Identities=20% Similarity=0.173 Sum_probs=69.9
Q ss_pred CeEEEECCCCchHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCC----CCCCC--CCceEE
Q 010274 217 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR----LPYPS--RSFELA 283 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~-----~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~----lp~~~--~sFDlV 283 (514)
++|||||||+|..+..++.. .++++|+++..+..+...+. ..+. .+.+..++... ++..+ ++||+|
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V 152 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQ-KAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI 152 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence 58999999999999999853 57788877766655543332 2343 46777777432 33333 789999
Q ss_pred EecccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 284 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 284 ~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
++... ..+...++.++.++|||||++++...
T Consensus 153 ~~d~~----~~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 153 FIDAD----KRNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp EECSC----GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred EECCC----HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 96642 34557799999999999999998653
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-08 Score=98.33 Aligned_cols=96 Identities=15% Similarity=0.201 Sum_probs=68.9
Q ss_pred CeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCC-CC--------------
Q 010274 217 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-------------- 274 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~-lp-------------- 274 (514)
.+|||||||+|.++..++. ..|+++|+++..+..+.... ...+. .+.+..+|... ++
T Consensus 62 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 140 (239)
T 2hnk_A 62 KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYW-KENGLENKIFLKLGSALETLQVLIDSKSAPSWASD 140 (239)
T ss_dssp SEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHH-HHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred CEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence 5899999999999999874 35788888776665554332 33343 26777777533 12
Q ss_pred CCC--CCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 275 YPS--RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 275 ~~~--~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
|++ ++||+|++... ..+...++.++.++|||||++++..
T Consensus 141 f~~~~~~fD~I~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 141 FAFGPSSIDLFFLDAD----KENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp TCCSTTCEEEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccCCCCCcCEEEEeCC----HHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 333 78999997652 3445678999999999999999975
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.5e-08 Score=104.51 Aligned_cols=126 Identities=14% Similarity=0.003 Sum_probs=83.5
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCC-CCCCCCceEEEecccccc-
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELAHCSRCRID- 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~l-p~~~~sFDlV~~s~~~l~- 291 (514)
+.+|||+|||+|.++..++. ..|+++|+++.++..+..+. +..+....+..+|+... +...+.||+|++....+.
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~-~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~ 293 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAA-LRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK 293 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred CCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHH-HHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence 46899999999999999984 35889999888887666443 44455556667776543 221334999997532111
Q ss_pred -------cccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEE
Q 010274 292 -------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (514)
Q Consensus 292 -------~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~ 345 (514)
...+...++..+.++|||||+|++++...... .....+.+...+.+.|...
T Consensus 294 ~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~---~~~f~~~v~~a~~~~g~~~ 351 (393)
T 4dmg_A 294 RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLR---LEDLLEVARRAAADLGRRL 351 (393)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC---HHHHHHHHHHHHHHHTCCE
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCC---HHHHHHHHHHHHHHhCCeE
Confidence 12233568999999999999999777543211 1122245566677777543
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=5.5e-09 Score=105.90 Aligned_cols=99 Identities=15% Similarity=0.158 Sum_probs=65.9
Q ss_pred CCeEEEECCCCchHHHHHhcC-CCccccC----ChhhhhHHHHHHHHHcC-CCeEEEee-cCCCCCCCCCCceEEEeccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH-DIIAMSL----APNDVHENQIQFALERG-IPSTLGVL-GTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-~V~gvdi----s~~dis~a~~~~A~~rg-~~~~~~~~-d~~~lp~~~~sFDlV~~s~~ 288 (514)
..+|||||||+|.++..+++. .|+++|+ +...+.... ....+ ..+.+.++ |+..++ .++||+|+|...
T Consensus 83 g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd~~ 157 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIP---MSTYGWNLVRLQSGVDVFFIP--PERCDTLLCDIG 157 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC---CCSTTGGGEEEECSCCTTTSC--CCCCSEEEECCC
T ss_pred CCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHH---hhhcCCCCeEEEeccccccCC--cCCCCEEEECCc
Confidence 358999999999999999874 6888888 332221100 01111 24667766 666654 468999998653
Q ss_pred c--cccccchH---HHHHHHHhhCCCCeEEEEEeCC
Q 010274 289 R--IDWLQRDG---ILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 289 ~--l~~~~d~~---~lL~el~RvLrPGG~lvis~P~ 319 (514)
. .++..+.. .+|.++.++|||||.|++....
T Consensus 158 ~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~ 193 (305)
T 2p41_A 158 ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 193 (305)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred cccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 2 12333322 4789999999999999986643
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1e-08 Score=102.33 Aligned_cols=101 Identities=13% Similarity=0.103 Sum_probs=68.4
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHH-----------cCCCeEEEeecCCC-CCCCCCCc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE-----------RGIPSTLGVLGTKR-LPYPSRSF 280 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~-----------rg~~~~~~~~d~~~-lp~~~~sF 280 (514)
+++|||||||+|.++..++.. .|+++|+++..+..+...+ .. ...++.+..+|... ++. +++|
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f 153 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF 153 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred CCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence 468999999999999999854 5677777766554444322 10 12356777777543 222 5789
Q ss_pred eEEEeccccccccc--c--hHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 281 ELAHCSRCRIDWLQ--R--DGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 281 DlV~~s~~~l~~~~--d--~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
|+|++.. ..++.+ . ...+++++.++|+|||.+++....
T Consensus 154 D~Ii~d~-~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 195 (281)
T 1mjf_A 154 DVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 195 (281)
T ss_dssp EEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEECC-CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 9999754 222211 1 256899999999999999987543
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-08 Score=104.94 Aligned_cols=123 Identities=13% Similarity=0.086 Sum_probs=84.3
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCC----CCCCceEEEecccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY----PSRSFELAHCSRCR 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~----~~~sFDlV~~s~~~ 289 (514)
.+|||+|||+|.++..++. ..|+++|+++..+..+..+. ...+. ++.+..+|+..... .+++||+|++..-.
T Consensus 211 ~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~-~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~ 289 (382)
T 1wxx_A 211 ERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENA-RLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPA 289 (382)
T ss_dssp EEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHH-HHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHH-HHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCCC
Confidence 5899999999999999884 46889999888777666443 33344 47888888655421 25689999974311
Q ss_pred --------cccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCc
Q 010274 290 --------IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 343 (514)
Q Consensus 290 --------l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf 343 (514)
.........++.++.++|+|||.+++++...... .+ .....+.+.+.+.|.
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~--~~~~~i~~~~~~~g~ 348 (382)
T 1wxx_A 290 FAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMT-EP--LFYAMVAEAAQDAHR 348 (382)
T ss_dssp SCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-HH--HHHHHHHHHHHHTTC
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCC-HH--HHHHHHHHHHHHcCC
Confidence 1122344679999999999999999988654321 11 122345566777774
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=4.2e-08 Score=97.05 Aligned_cols=129 Identities=11% Similarity=0.081 Sum_probs=88.1
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
+.+|||||||+|.++..++. ..++++|+++.++.-.. +++...|.+..+.+.|...-+ +.+.||+|++.- ++|
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~-~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lk-ti~ 209 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVD-EALTRLNVPHRTNVADLLEDR-LDEPADVTLLLK-TLP 209 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHH-HHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETT-CHH
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH-HHHHhcCCCceEEEeeecccC-CCCCcchHHHHH-HHH
Confidence 56899999999999988863 46788888777665554 333444778888888865555 347899999776 788
Q ss_pred cccch--HHHHHHHHhhCCCCeEEEEEeCC-CCCCChhHHHhH-HHHHHHHHhcCcEEEEE
Q 010274 292 WLQRD--GILLLELDRLLRPGGYFVYSSPE-AYAHDPENRRIW-NAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 292 ~~~d~--~~lL~el~RvLrPGG~lvis~P~-~~~~~~e~~~~~-~~l~~ll~~~Gf~~v~~ 348 (514)
++++. ...+ ++.+.|+|+|.++-.... .-.+.+.....+ ..+++.+.+.||.+.+.
T Consensus 210 ~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~ 269 (281)
T 3lcv_B 210 CLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRL 269 (281)
T ss_dssp HHHHHSTTHHH-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeee
Confidence 88765 2345 999999999998854332 222333322323 46778888899954443
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2e-08 Score=100.40 Aligned_cols=120 Identities=15% Similarity=0.155 Sum_probs=78.0
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHc---------CCCeEEEeecCCCC-CCCCCCce
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL-PYPSRSFE 281 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~r---------g~~~~~~~~d~~~l-p~~~~sFD 281 (514)
+++|||||||+|.++..++.. .++++|+++..+ +.|++. ..++.+..+|.... +..+++||
T Consensus 79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-----~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 153 (283)
T 2i7c_A 79 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVI-----EVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYD 153 (283)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHH-----HHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred CCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHH-----HHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCce
Confidence 468999999999999999853 466666655444 454443 24567888876542 22357899
Q ss_pred EEEecccccccccch----HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 282 LAHCSRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 282 lV~~s~~~l~~~~d~----~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
+|++.. ..++.+.. ..+++++.++|||||.+++.....+... .....+.+.+++. |..+
T Consensus 154 ~Ii~d~-~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~----~~~~~~~~~l~~~-F~~v 216 (283)
T 2i7c_A 154 VIIVDS-SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHV----GTIKNMIGYAKKL-FKKV 216 (283)
T ss_dssp EEEEEC-CCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCH----HHHHHHHHHHHTT-CSEE
T ss_pred EEEEcC-CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCH----HHHHHHHHHHHHH-CCce
Confidence 999754 23322221 5799999999999999999876544221 1233444555554 4433
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.3e-08 Score=105.31 Aligned_cols=121 Identities=19% Similarity=0.159 Sum_probs=81.6
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCC-CCCCceEEEec--
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY-PSRSFELAHCS-- 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~-~~~sFDlV~~s-- 286 (514)
..+|||+|||+|..+..|+. ..|+++|+++..+..+..+. +..|. ++.+...|...++. .+++||.|++.
T Consensus 118 g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~-~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 118 PQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANI-SRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHH-HHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 46899999999999998884 35888888887776555333 33344 57788888877653 45789999962
Q ss_pred --c-cccccccc----------------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcC
Q 010274 287 --R-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC 342 (514)
Q Consensus 287 --~-~~l~~~~d----------------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~G 342 (514)
. .++...++ ...+|.++.++|||||+|++++...... ++. ..+..++++.+
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~--Ene---~vv~~~l~~~~ 266 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQE--ENE---AVCLWLKETYP 266 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSST--TTH---HHHHHHHHHST
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcc--cCH---HHHHHHHHHCC
Confidence 1 12221111 2458999999999999999988654322 221 23455666654
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=4.4e-08 Score=98.01 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=78.7
Q ss_pred cHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC--CeEE
Q 010274 191 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI--PSTL 265 (514)
Q Consensus 191 ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~--~~~~ 265 (514)
..+...+.+.+.+... ...+|||+|||+|.++..++. ..|+++|+++..+..+..+ +...+. .+.+
T Consensus 107 ~te~lv~~~l~~~~~~--------~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n-~~~~~l~~~v~~ 177 (284)
T 1nv8_A 107 ETEELVELALELIRKY--------GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKN-AERHGVSDRFFV 177 (284)
T ss_dssp THHHHHHHHHHHHHHH--------TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHH-HHHTTCTTSEEE
T ss_pred hHHHHHHHHHHHhccc--------CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCceEE
Confidence 3445555555554311 224799999999999999884 3688888888777666533 333444 3788
Q ss_pred EeecCCCCCCCCCCc---eEEEecccccc----------ccc--------chHHHHHHHH-hhCCCCeEEEEEeCC
Q 010274 266 GVLGTKRLPYPSRSF---ELAHCSRCRID----------WLQ--------RDGILLLELD-RLLRPGGYFVYSSPE 319 (514)
Q Consensus 266 ~~~d~~~lp~~~~sF---DlV~~s~~~l~----------~~~--------d~~~lL~el~-RvLrPGG~lvis~P~ 319 (514)
..+|.... ++ ++| |+|+++--.+. |.+ +...+++++. +.|+|||++++..+.
T Consensus 178 ~~~D~~~~-~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~ 251 (284)
T 1nv8_A 178 RKGEFLEP-FK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 251 (284)
T ss_dssp EESSTTGG-GG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred EECcchhh-cc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 88887652 23 478 99998621010 111 1226899999 999999999997643
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.2e-08 Score=109.31 Aligned_cols=120 Identities=18% Similarity=0.158 Sum_probs=86.0
Q ss_pred CeEEEECCCCchHHHHHhc--C-CCccccCChhhhhHHHHHHHHHcCC---CeEEEeecCCC-CCCCCCCceEEEeccc-
Q 010274 217 RNVLDVGCGVASFGAYLLS--H-DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKR-LPYPSRSFELAHCSRC- 288 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~-~V~gvdis~~dis~a~~~~A~~rg~---~~~~~~~d~~~-lp~~~~sFDlV~~s~~- 288 (514)
.+|||+|||+|.++..++. . .|+++|+++..+..+..+.+. .+. ++.+..+|+.. ++...++||+|++..-
T Consensus 541 ~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~-ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~ 619 (703)
T 3v97_A 541 KDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRL-NGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPT 619 (703)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH-TTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCCS
T ss_pred CcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHhcCCCccEEEECCcc
Confidence 5899999999999999873 3 488999998888777644443 343 47888888655 3444578999998532
Q ss_pred ---------ccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 289 ---------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 289 ---------~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
..+...+...++.++.++|+|||+|+++......... .+.+++.||+..
T Consensus 620 f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~---------~~~l~~~g~~~~ 677 (703)
T 3v97_A 620 FSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMD---------LDGLAKLGLKAQ 677 (703)
T ss_dssp BC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCC---------HHHHHHTTEEEE
T ss_pred ccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccC---------HHHHHHcCCcee
Confidence 1233345567899999999999999998865322211 355677888643
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-07 Score=97.36 Aligned_cols=114 Identities=11% Similarity=0.130 Sum_probs=80.3
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
.+|||+|||+|.++.. +. ..|+++|+++..+..+..+ ++..+. ++.+..+|+.... ++||+|++.. ..+
T Consensus 197 ~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n-~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dp--P~~ 269 (336)
T 2yx1_A 197 DVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKN-IKLNKLEHKIIPILSDVREVD---VKGNRVIMNL--PKF 269 (336)
T ss_dssp CEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEESCGGGCC---CCEEEEEECC--TTT
T ss_pred CEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECChHHhc---CCCcEEEECC--cHh
Confidence 5899999999999999 74 4688998888877666643 344443 5888888887765 7899999753 111
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc-CcEEEEEe
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKIVSKK 349 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~-Gf~~v~~~ 349 (514)
...++.++.++|+|||.+++.+.... ...+.+.+++. +++++..+
T Consensus 270 ---~~~~l~~~~~~L~~gG~l~~~~~~~~---------~~~~~~~l~~~~~~~i~~~~ 315 (336)
T 2yx1_A 270 ---AHKFIDKALDIVEEGGVIHYYTIGKD---------FDKAIKLFEKKCDCEVLEKR 315 (336)
T ss_dssp ---GGGGHHHHHHHEEEEEEEEEEEEESS---------SHHHHHHHHHHSEEEEEEEE
T ss_pred ---HHHHHHHHHHHcCCCCEEEEEEeecC---------chHHHHHHHHhcCCcEEEEE
Confidence 23689999999999999998654322 12333445555 67655433
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.4e-08 Score=106.80 Aligned_cols=126 Identities=21% Similarity=0.172 Sum_probs=85.5
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC-CCCCCceEEEe----
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-YPSRSFELAHC---- 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp-~~~~sFDlV~~---- 285 (514)
+.+|||+|||+|..+..|+. ..|+++|+++..+..+.. .+...|..+.+..+|...++ +.+++||+|++
T Consensus 102 g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~-n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~Pc 180 (464)
T 3m6w_A 102 GERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLE-NVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPC 180 (464)
T ss_dssp TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHH-HHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECCC
T ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCeEEEEECCHHHhhhhccccCCEEEECCCc
Confidence 46899999999999999883 358889888877765553 33444555777778876665 23578999995
Q ss_pred cc-cccccccc----------------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc-CcEEEE
Q 010274 286 SR-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKIVS 347 (514)
Q Consensus 286 s~-~~l~~~~d----------------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~-Gf~~v~ 347 (514)
+. .++...++ ...+|.++.++|||||+|++++-.... .++ -..+..++++. +|+++.
T Consensus 181 Sg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~--eEn---e~vv~~~l~~~~~~~l~~ 255 (464)
T 3m6w_A 181 SGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAP--EEN---EGVVAHFLKAHPEFRLED 255 (464)
T ss_dssp CCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG--GGT---HHHHHHHHHHCTTEEEEC
T ss_pred CCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCch--hcC---HHHHHHHHHHCCCcEEEe
Confidence 21 11221121 156899999999999999998865431 222 23456667776 576654
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.68 E-value=1e-08 Score=104.39 Aligned_cols=96 Identities=14% Similarity=0.166 Sum_probs=68.0
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHc-----CCCeEEEeecCCCC--CCCCCCceEEEe
Q 010274 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRL--PYPSRSFELAHC 285 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~r-----g~~~~~~~~d~~~l--p~~~~sFDlV~~ 285 (514)
.+|||||||+|.++..++.. .|+++|++ +.+++.|++. ..++.++++|.... .+++++||+|++
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEid-----p~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~ 165 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELD-----AELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIR 165 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESC-----HHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECC-----HHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEE
Confidence 48999999999999999862 34555554 5555666554 23578888886543 345678999997
Q ss_pred ccccccc-cc---chHHHHHHHHhhCCCCeEEEEEeC
Q 010274 286 SRCRIDW-LQ---RDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 286 s~~~l~~-~~---d~~~lL~el~RvLrPGG~lvis~P 318 (514)
.. ..++ .+ ....+++++.++|||||.|++...
T Consensus 166 D~-~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 166 DV-FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp CC-STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CC-CCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 53 2221 11 126799999999999999998664
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.8e-08 Score=100.49 Aligned_cols=125 Identities=10% Similarity=0.044 Sum_probs=86.1
Q ss_pred CeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC---CeEEEeecCCCCCC----CCCCceEEEec
Q 010274 217 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRLPY----PSRSFELAHCS 286 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~---~~~~~~~d~~~lp~----~~~sFDlV~~s 286 (514)
.+|||+|||+|.++..++.. .|+++|+++..+..+..+ +...+. ++.+..+|+..... .+.+||+|++.
T Consensus 222 ~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n-~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~d 300 (396)
T 3c0k_A 222 KRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQN-VELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_dssp CEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEEC
Confidence 58999999999999999853 688999988877666643 344455 67888888655421 14689999985
Q ss_pred cc--------ccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEE
Q 010274 287 RC--------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (514)
Q Consensus 287 ~~--------~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~ 345 (514)
.- ..+.......++.++.++|+|||.++++....... .+ ...+.+.+.+.+.|+..
T Consensus 301 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~--~~~~~i~~~~~~~g~~~ 364 (396)
T 3c0k_A 301 PPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMT-SD--LFQKIIADAAIDAGRDV 364 (396)
T ss_dssp CSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCC-HH--HHHHHHHHHHHHHTCCE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC-HH--HHHHHHHHHHHHcCCeE
Confidence 31 11222445679999999999999999987554221 11 12334556777888543
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-08 Score=97.30 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=70.2
Q ss_pred CeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCC-C-CC--C--CCceEE
Q 010274 217 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-YP--S--RSFELA 283 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~l-p-~~--~--~sFDlV 283 (514)
.+|||||||+|.++..++. ..|+++|+++..+..+... ....+. ++.+..+|+.+. + +. . ++||+|
T Consensus 71 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~-~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v 149 (229)
T 2avd_A 71 KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPL-WRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 149 (229)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHH-HHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence 5899999999999999985 3578888888776655533 333343 577887775432 1 11 1 689999
Q ss_pred EecccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 284 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 284 ~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
++... ..+...++.++.++|||||.+++...
T Consensus 150 ~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 150 VVDAD----KENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp EECSC----STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EECCC----HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 97542 33456799999999999999998653
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.67 E-value=4.1e-08 Score=97.34 Aligned_cols=90 Identities=16% Similarity=0.111 Sum_probs=65.9
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHc---------CCCeEEEeecCCCCCCCCCCceEEE
Q 010274 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRLPYPSRSFELAH 284 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~r---------g~~~~~~~~d~~~lp~~~~sFDlV~ 284 (514)
+++|||||||+|.++..++.. .|+++|+++.. ++.|++. ..++.+..+|..... ++||+|+
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~-----i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii 144 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKI-----LDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIF 144 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHH-----HGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEE
T ss_pred CCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHH-----HHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEE
Confidence 468999999999999988864 45566555544 4444332 235777878876654 7899999
Q ss_pred ecccccccccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 285 ~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
+.. .++..+++++.++|||||.+++....
T Consensus 145 ~d~------~dp~~~~~~~~~~L~pgG~lv~~~~~ 173 (262)
T 2cmg_A 145 CLQ------EPDIHRIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_dssp ESS------CCCHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred ECC------CChHHHHHHHHHhcCCCcEEEEEcCC
Confidence 652 34456999999999999999986543
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=7.4e-08 Score=94.31 Aligned_cols=131 Identities=16% Similarity=0.080 Sum_probs=84.0
Q ss_pred CCCeEEEECCCCchHHHHHh-cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLL-SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La-~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
.+.+|||||||+|.++..+. ...++++|+++.++.-+. +.+...+.+..+.+.|....+.+ ++||+|++.- ++|++
T Consensus 105 ~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar-~~~~~~g~~~~~~v~D~~~~~~~-~~~DvvLllk-~lh~L 181 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVIT-PFAREKDWDFTFALQDVLCAPPA-EAGDLALIFK-LLPLL 181 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHH-HHHHHTTCEEEEEECCTTTSCCC-CBCSEEEEES-CHHHH
T ss_pred CCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHH-HHHHhcCCCceEEEeecccCCCC-CCcchHHHHH-HHHHh
Confidence 45689999999999999877 456888888877765554 33445578888999998877766 4899999766 67877
Q ss_pred cch-HHHHHHHHhhCCCCeEEEEEeC-CCCCCChhHHHhH-HHHHHHHHhcCcEEEEE
Q 010274 294 QRD-GILLLELDRLLRPGGYFVYSSP-EAYAHDPENRRIW-NAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 294 ~d~-~~lL~el~RvLrPGG~lvis~P-~~~~~~~e~~~~~-~~l~~ll~~~Gf~~v~~ 348 (514)
++. .....++.+.|+++|.++-... ..-.+.+.....+ ..+++.+.+..|.+.+.
T Consensus 182 E~q~~~~~~~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~~ 239 (253)
T 3frh_A 182 EREQAGSAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDKK 239 (253)
T ss_dssp HHHSTTHHHHHHHHCBCSEEEEEEECC-----------CHHHHHHHHSCTTEEEEEEE
T ss_pred hhhchhhHHHHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHHhhccchhhhhe
Confidence 654 2244488899999977764321 2222222222222 24455565555544433
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.9e-08 Score=96.38 Aligned_cols=96 Identities=11% Similarity=0.059 Sum_probs=70.1
Q ss_pred CeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCC-C-C-----CCCCceE
Q 010274 217 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-Y-----PSRSFEL 282 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~l-p-~-----~~~sFDl 282 (514)
++|||||||+|..+..++. ..++++|+++..+..+... ..+.+. .+.+..+|..+. + + ++++||+
T Consensus 72 ~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~-~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 150 (237)
T 3c3y_A 72 KKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPF-IRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDF 150 (237)
T ss_dssp CEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHH-HHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEE
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCE
Confidence 5899999999999998873 4678888887766555533 333454 367787775432 2 1 2478999
Q ss_pred EEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 283 V~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
|++.. ...+...+++++.++|||||++++..
T Consensus 151 I~~d~----~~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 151 GFVDA----DKPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEECS----CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEECC----chHHHHHHHHHHHHhcCCCeEEEEec
Confidence 99653 23455779999999999999999865
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.62 E-value=3e-08 Score=103.60 Aligned_cols=126 Identities=13% Similarity=0.026 Sum_probs=86.0
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCC----CCCCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPY----PSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~----~~~sFDlV~~s 286 (514)
..+|||+|||+|.++..++.. .|+++|+++..+..+..+ +...+. ++.+..+|+..... .+++||+|++.
T Consensus 218 ~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n-~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d 296 (396)
T 2as0_A 218 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKEN-AKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 296 (396)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence 368999999999999999853 688999988887766644 344454 57888888655421 25689999984
Q ss_pred ccc--------cccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEE
Q 010274 287 RCR--------IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (514)
Q Consensus 287 ~~~--------l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~ 345 (514)
.-. .++..+...++.++.++|+|||.+++++...... .+ ...+.+.+.+...|...
T Consensus 297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~-~~--~~~~~v~~~~~~~~~~~ 360 (396)
T 2as0_A 297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVD-LQ--MFKDMIIAAGAKAGKFL 360 (396)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSC-HH--HHHHHHHHHHHHTTEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCC-HH--HHHHHHHHHHHHcCCeE
Confidence 311 1222445678999999999999999987654221 11 12234455666777544
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=6.4e-08 Score=97.46 Aligned_cols=111 Identities=13% Similarity=0.038 Sum_probs=76.6
Q ss_pred CCeEEEECC------CCch-HHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEE-EeecCCCCCCCCCCceEEEe
Q 010274 216 IRNVLDVGC------GVAS-FGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTL-GVLGTKRLPYPSRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGC------GtG~-~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~-~~~d~~~lp~~~~sFDlV~~ 285 (514)
..+|||+|| |+|. .+..+.+ ..|+++|+++. + .++.+ .++|+..++++ ++||+|+|
T Consensus 64 g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-v------------~~v~~~i~gD~~~~~~~-~~fD~Vvs 129 (290)
T 2xyq_A 64 NMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-V------------SDADSTLIGDCATVHTA-NKWDLIIS 129 (290)
T ss_dssp TCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-B------------CSSSEEEESCGGGCCCS-SCEEEEEE
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-C------------CCCEEEEECccccCCcc-CcccEEEE
Confidence 468999999 4475 2222222 56899999876 1 24667 88998888765 68999997
Q ss_pred cccccccc-----------cchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 286 SRCRIDWL-----------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 286 s~~~l~~~-----------~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
.. ..++. .....+++++.|+|||||.|++....... ..++.+++++.||..+...
T Consensus 130 n~-~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~--------~~~l~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 130 DM-YDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW--------NADLYKLMGHFSWWTAFVT 195 (290)
T ss_dssp CC-CCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC--------CHHHHHHHTTEEEEEEEEE
T ss_pred cC-CccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCC--------HHHHHHHHHHcCCcEEEEE
Confidence 64 22211 11246899999999999999997643311 2367788999999766544
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.4e-08 Score=103.86 Aligned_cols=127 Identities=14% Similarity=0.072 Sum_probs=85.9
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCC-CCCCCceEEEecc-
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHCSR- 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp-~~~~sFDlV~~s~- 287 (514)
+.+|||+|||+|..+..|+. ..|+++|+++..+..+..+.. ..|. ++.+...|...++ ..+++||+|++.-
T Consensus 106 g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~-r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~DaP 184 (456)
T 3m4x_A 106 GEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIE-RWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAP 184 (456)
T ss_dssp TCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHH-HHTCSSEEEECCCHHHHHHHHTTCEEEEEEECC
T ss_pred CCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhhhccccCCEEEECCC
Confidence 36899999999999988873 358899888877766554433 3344 5677777766654 2347899999631
Q ss_pred ----cccccccc----------------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEE
Q 010274 288 ----CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 288 ----~~l~~~~d----------------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~ 347 (514)
.++...++ ...+|.++.++|||||+|++++-.... .++ -..+..++++.+|+++.
T Consensus 185 CSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~--eEn---e~vv~~~l~~~~~~l~~ 259 (456)
T 3m4x_A 185 CSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP--EEN---EEIISWLVENYPVTIEE 259 (456)
T ss_dssp CCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG--GGT---HHHHHHHHHHSSEEEEC
T ss_pred CCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc--ccC---HHHHHHHHHhCCCEEEe
Confidence 11111111 126899999999999999998865431 222 24567788888877664
Q ss_pred E
Q 010274 348 K 348 (514)
Q Consensus 348 ~ 348 (514)
.
T Consensus 260 ~ 260 (456)
T 3m4x_A 260 I 260 (456)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-07 Score=98.20 Aligned_cols=129 Identities=14% Similarity=0.134 Sum_probs=87.4
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEee
Q 010274 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVL 268 (514)
Q Consensus 194 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~ 268 (514)
...+.+.+.+.. ....+|||+|||+|.++..+++ ..++|+|+++..+..+ .++.+..+
T Consensus 26 ~l~~~~~~~~~~--------~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~ 88 (421)
T 2ih2_A 26 EVVDFMVSLAEA--------PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILA 88 (421)
T ss_dssp HHHHHHHHHCCC--------CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEES
T ss_pred HHHHHHHHhhcc--------CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeC
Confidence 345555665542 1234899999999999999884 3688999888776433 35678888
Q ss_pred cCCCCCCCCCCceEEEeccccc--cc-------ccc-------------------hHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 269 GTKRLPYPSRSFELAHCSRCRI--DW-------LQR-------------------DGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 269 d~~~lp~~~~sFDlV~~s~~~l--~~-------~~d-------------------~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
|....+. .++||+|+++--.. .. ..+ ...++..+.++|+|||++++..|..
T Consensus 89 D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~ 167 (421)
T 2ih2_A 89 DFLLWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 167 (421)
T ss_dssp CGGGCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred ChhhcCc-cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence 8776653 46899999852111 10 111 1257899999999999999999875
Q ss_pred CCCChhHHHhHHHHHHHHHhcCcE
Q 010274 321 YAHDPENRRIWNAMYDLLKSMCWK 344 (514)
Q Consensus 321 ~~~~~e~~~~~~~l~~ll~~~Gf~ 344 (514)
+.... ....+.+.+.+.|+.
T Consensus 168 ~l~~~----~~~~lr~~l~~~~~~ 187 (421)
T 2ih2_A 168 WLVLE----DFALLREFLAREGKT 187 (421)
T ss_dssp GGTCG----GGHHHHHHHHHHSEE
T ss_pred HhcCc----cHHHHHHHHHhcCCe
Confidence 43222 235677777777873
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-07 Score=96.80 Aligned_cols=122 Identities=13% Similarity=0.164 Sum_probs=84.8
Q ss_pred CCeEEEECCCCchHHHHHhc---------CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLS---------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---------~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s 286 (514)
..+|||+|||+|.++..++. ..++|+|+++..+..+..+.. ..+.++.+..+|.... ....+||+|+++
T Consensus 131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~-~~g~~~~i~~~D~l~~-~~~~~fD~Ii~N 208 (344)
T 2f8l_A 131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD-LQRQKMTLLHQDGLAN-LLVDPVDVVISD 208 (344)
T ss_dssp EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH-HHTCCCEEEESCTTSC-CCCCCEEEEEEE
T ss_pred CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHH-hCCCCceEEECCCCCc-cccCCccEEEEC
Confidence 46899999999999888762 357888888777666654433 3355778888886553 345789999987
Q ss_pred ccccccccch------------------HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcE
Q 010274 287 RCRIDWLQRD------------------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (514)
Q Consensus 287 ~~~l~~~~d~------------------~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~ 344 (514)
.. +++.+.. ..++..+.+.|+|||++++..|..+..... ...+.+.+.+.|+.
T Consensus 209 PP-fg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~----~~~ir~~l~~~~~~ 279 (344)
T 2f8l_A 209 LP-VGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSD----FAKVDKFIKKNGHI 279 (344)
T ss_dssp CC-CSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTT----HHHHHHHHHHHEEE
T ss_pred CC-CCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCch----HHHHHHHHHhCCeE
Confidence 53 3333221 258999999999999999998765322221 25666777777763
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=5.2e-07 Score=95.48 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=80.9
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCC----CCCCCCCceEEEeccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR----LPYPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~----lp~~~~sFDlV~~s~~ 288 (514)
..+|||+|||+|.++..|+. ..|+++|+++.++..+..+ +...+. ++.+..+|+.. +++.+++||+|++.--
T Consensus 287 ~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n-~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPP 365 (433)
T 1uwv_A 287 EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQN-ARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPA 365 (433)
T ss_dssp TCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCC
T ss_pred CCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHH-HHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECCC
Confidence 35899999999999999985 4688999888877766643 334444 68899988766 3456678999997532
Q ss_pred ccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+..- ..+++.+. .++|++.++++..+. .+..-...+.+.||.+.....
T Consensus 366 ---r~g~-~~~~~~l~-~~~p~~ivyvsc~p~---------tlard~~~l~~~Gy~~~~~~~ 413 (433)
T 1uwv_A 366 ---RAGA-AGVMQQII-KLEPIRIVYVSCNPA---------TLARDSEALLKAGYTIARLAM 413 (433)
T ss_dssp ---TTCC-HHHHHHHH-HHCCSEEEEEESCHH---------HHHHHHHHHHHTTCEEEEEEE
T ss_pred ---CccH-HHHHHHHH-hcCCCeEEEEECChH---------HHHhhHHHHHHCCcEEEEEEE
Confidence 1111 24555554 378999988865321 122223455667998876443
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.8e-07 Score=93.57 Aligned_cols=109 Identities=19% Similarity=0.169 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcC--CCeEEEeec
Q 010274 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLG 269 (514)
Q Consensus 194 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d 269 (514)
...+.+.+.+.. ....+|||||||+|.++..|++ ..|+++|+++.++..+..+. ...+ .++.+..+|
T Consensus 15 ~i~~~i~~~~~~--------~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~D 85 (285)
T 1zq9_A 15 LIINSIIDKAAL--------RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRV-QGTPVASKLQVLVGD 85 (285)
T ss_dssp HHHHHHHHHTCC--------CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHH-TTSTTGGGEEEEESC
T ss_pred HHHHHHHHhcCC--------CCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHH-HhcCCCCceEEEEcc
Confidence 345556665543 2336899999999999999985 46788887776664443222 2222 257888899
Q ss_pred CCCCCCCCCCceEEEecccccccccchH-HHH--------------HHH--HhhCCCCeEEE
Q 010274 270 TKRLPYPSRSFELAHCSRCRIDWLQRDG-ILL--------------LEL--DRLLRPGGYFV 314 (514)
Q Consensus 270 ~~~lp~~~~sFDlV~~s~~~l~~~~d~~-~lL--------------~el--~RvLrPGG~lv 314 (514)
+..++++ +||+|+++. ..++..+.. .++ +|+ .++|+|||.++
T Consensus 86 ~~~~~~~--~fD~vv~nl-py~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 86 VLKTDLP--FFDTCVANL-PYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp TTTSCCC--CCSEEEEEC-CGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred eecccch--hhcEEEEec-CcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 8887765 799999864 344432221 122 334 36999999874
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.45 E-value=5.1e-07 Score=90.95 Aligned_cols=83 Identities=16% Similarity=0.272 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcC-CCeEEEeecC
Q 010274 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGT 270 (514)
Q Consensus 194 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~ 270 (514)
...+.+.+.+.. ....+|||||||+|.++..|++ ..|+++|+++..+..+..+.. ..+ .++.+..+|+
T Consensus 29 ~i~~~i~~~~~~--------~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~-~~~~~~v~~~~~D~ 99 (299)
T 2h1r_A 29 GILDKIIYAAKI--------KSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCL-YEGYNNLEVYEGDA 99 (299)
T ss_dssp HHHHHHHHHHCC--------CTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHH-HTTCCCEEC----C
T ss_pred HHHHHHHHhcCC--------CCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCCceEEEECch
Confidence 345555555542 2235899999999999999985 368888888877765553332 233 4678888888
Q ss_pred CCCCCCCCCceEEEecc
Q 010274 271 KRLPYPSRSFELAHCSR 287 (514)
Q Consensus 271 ~~lp~~~~sFDlV~~s~ 287 (514)
..++++ +||+|+++.
T Consensus 100 ~~~~~~--~~D~Vv~n~ 114 (299)
T 2h1r_A 100 IKTVFP--KFDVCTANI 114 (299)
T ss_dssp CSSCCC--CCSEEEEEC
T ss_pred hhCCcc--cCCEEEEcC
Confidence 877764 799999765
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.4e-06 Score=90.39 Aligned_cols=94 Identities=16% Similarity=0.231 Sum_probs=68.5
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
.+|||+|||+|.++..|+. ..|+++|+++.++..+..+. ...+..+.+..+|+.++... +||+|++... ...
T Consensus 292 ~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~-~~ngl~v~~~~~d~~~~~~~--~fD~Vv~dPP---r~g 365 (425)
T 2jjq_A 292 EKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNV-EINNVDAEFEVASDREVSVK--GFDTVIVDPP---RAG 365 (425)
T ss_dssp SEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HHHTCCEEEEECCTTTCCCT--TCSEEEECCC---TTC
T ss_pred CEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHH-HHcCCcEEEEECChHHcCcc--CCCEEEEcCC---ccc
Confidence 5899999999999999985 36889999888887666443 44455588888888776432 8999997542 111
Q ss_pred chHHHHHHHHhhCCCCeEEEEEe
Q 010274 295 RDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 295 d~~~lL~el~RvLrPGG~lvis~ 317 (514)
-...+++.+. .|+|||.++++.
T Consensus 366 ~~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 366 LHPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp SCHHHHHHHH-HHCCSEEEEEES
T ss_pred hHHHHHHHHH-hcCCCcEEEEEC
Confidence 1234555554 599999999976
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.2e-06 Score=93.04 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=79.7
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc-----------------CCCccccCChhhhhHHHHHHH
Q 010274 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----------------HDIIAMSLAPNDVHENQIQFA 256 (514)
Q Consensus 194 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-----------------~~V~gvdis~~dis~a~~~~A 256 (514)
...+.+.+++.. ....+|||.|||+|.++..++. ..+.|+|+++..+..+..+..
T Consensus 158 ~v~~~mv~~l~~--------~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~ 229 (445)
T 2okc_A 158 PLIQAMVDCINP--------QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 229 (445)
T ss_dssp HHHHHHHHHHCC--------CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--------CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH
Confidence 345566666642 2235799999999999877653 467888888776665554443
Q ss_pred HHcCC---CeEEEeecCCCCCCCCCCceEEEecccccc--cccc--------------hHHHHHHHHhhCCCCeEEEEEe
Q 010274 257 LERGI---PSTLGVLGTKRLPYPSRSFELAHCSRCRID--WLQR--------------DGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 257 ~~rg~---~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~--~~~d--------------~~~lL~el~RvLrPGG~lvis~ 317 (514)
. .+. ...+..+|+...+.. .+||+|+++-.... +... ...+++.+.++|||||++++..
T Consensus 230 l-~g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 230 L-HGIGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp H-TTCCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred H-hCCCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 3 344 567888887766654 48999998642111 1110 1368999999999999999988
Q ss_pred CCC
Q 010274 318 PEA 320 (514)
Q Consensus 318 P~~ 320 (514)
|..
T Consensus 308 p~~ 310 (445)
T 2okc_A 308 PDN 310 (445)
T ss_dssp EHH
T ss_pred CCc
Confidence 753
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.31 E-value=8.6e-09 Score=100.54 Aligned_cols=99 Identities=12% Similarity=0.074 Sum_probs=66.0
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCC-CCceEEEeccc----
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPS-RSFELAHCSRC---- 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~-~sFDlV~~s~~---- 288 (514)
..+|||||||+|.++..|+. ..|+++|+++..+..+..+.. ...++.+..+|...+++++ ++| .|+++..
T Consensus 30 ~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py~~~ 106 (245)
T 1yub_A 30 TDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPNKQRY-KIVGNIPYHLS 106 (245)
T ss_dssp SEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCCSSEE-EEEEECCSSSC
T ss_pred CCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcccCCCc-EEEEeCCcccc
Confidence 35899999999999999885 468899888877644432211 1235788889998888774 678 5665421
Q ss_pred ------ccccccchHHHH----HHHHhhCCCCeEEEEEe
Q 010274 289 ------RIDWLQRDGILL----LELDRLLRPGGYFVYSS 317 (514)
Q Consensus 289 ------~l~~~~d~~~lL----~el~RvLrPGG~lvis~ 317 (514)
.+.|......++ +.+.|+|+|||.+.+..
T Consensus 107 ~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 107 TQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp HHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred HHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 011111222334 66899999999887654
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.3e-06 Score=89.02 Aligned_cols=103 Identities=19% Similarity=0.288 Sum_probs=65.1
Q ss_pred CCCeEEEECCCCchHHHHHhc-------------------CCCccccCChhhhhHHHHHHHHH----------c--CCCe
Q 010274 215 NIRNVLDVGCGVASFGAYLLS-------------------HDIIAMSLAPNDVHENQIQFALE----------R--GIPS 263 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~-------------------~~V~gvdis~~dis~a~~~~A~~----------r--g~~~ 263 (514)
..-+|+|+|||+|..+..+.. ..|..-|+..+|...-....... . +.+.
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 356899999999988887732 12334455555543333222110 0 0011
Q ss_pred EE--Eeec-CCCCCCCCCCceEEEeccccccccc--------------------------------------chHHHHHH
Q 010274 264 TL--GVLG-TKRLPYPSRSFELAHCSRCRIDWLQ--------------------------------------RDGILLLE 302 (514)
Q Consensus 264 ~~--~~~d-~~~lp~~~~sFDlV~~s~~~l~~~~--------------------------------------d~~~lL~e 302 (514)
.+ .+.. ...-.||+++||+|+++. ++||+. |...+|+.
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~-aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ 210 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAF-SLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA 210 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEES-CTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecc-eeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 12 2222 223347899999999888 699986 23346889
Q ss_pred HHhhCCCCeEEEEEeC
Q 010274 303 LDRLLRPGGYFVYSSP 318 (514)
Q Consensus 303 l~RvLrPGG~lvis~P 318 (514)
.++.|+|||+++++..
T Consensus 211 ra~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 211 RAAEVKRGGAMFLVCL 226 (374)
T ss_dssp HHHHEEEEEEEEEEEE
T ss_pred HHHHhCCCCEEEEEEe
Confidence 9999999999999775
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=3.1e-06 Score=85.35 Aligned_cols=84 Identities=7% Similarity=-0.005 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCC
Q 010274 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK 271 (514)
Q Consensus 194 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~ 271 (514)
...+.+.+.+... ...+|||||||+|.++..|+. ..|+++|+++..+..+..... ...++.+..+|+.
T Consensus 37 ~i~~~Iv~~l~~~--------~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l 106 (295)
T 3gru_A 37 NFVNKAVESANLT--------KDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDAL 106 (295)
T ss_dssp HHHHHHHHHTTCC--------TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTT
T ss_pred HHHHHHHHhcCCC--------CcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchh
Confidence 4455566665432 235899999999999999985 578999999887766654433 2457889999999
Q ss_pred CCCCCCCCceEEEecc
Q 010274 272 RLPYPSRSFELAHCSR 287 (514)
Q Consensus 272 ~lp~~~~sFDlV~~s~ 287 (514)
.+++++.+||.|+++.
T Consensus 107 ~~~~~~~~fD~Iv~Nl 122 (295)
T 3gru_A 107 KVDLNKLDFNKVVANL 122 (295)
T ss_dssp TSCGGGSCCSEEEEEC
T ss_pred hCCcccCCccEEEEeC
Confidence 9888878899999664
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.17 E-value=7.2e-07 Score=87.10 Aligned_cols=65 Identities=12% Similarity=0.210 Sum_probs=46.7
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHc---CCCeEEEeecCCCCCCCC-CCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPS-RSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~r---g~~~~~~~~d~~~lp~~~-~sFDlV~~s 286 (514)
..+|||||||+|.++..|++ ..|+++|+++.++ +.++++ ..++.+..+|+..+++++ ..|+ |+++
T Consensus 31 ~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~-----~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~~-vv~n 101 (244)
T 1qam_A 31 HDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLC-----KTTENKLVDHDNFQVLNKDILQFKFPKNQSYK-IFGN 101 (244)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHH-----HHHHHHTTTCCSEEEECCCGGGCCCCSSCCCE-EEEE
T ss_pred CCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHH-----HHHHHhhccCCCeEEEEChHHhCCcccCCCeE-EEEe
Confidence 46899999999999999985 4577777766555 444433 246888999999988874 4564 4444
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1e-05 Score=80.34 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=61.8
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc-
Q 010274 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID- 291 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~- 291 (514)
.+|||+|||+|.++..++.. .+.++++.. |+....+.. ...+.++.....+++...++++.||+|+|.. +.+
T Consensus 76 ~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGv-Dl~~~pi~~-~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~-apns 152 (277)
T 3evf_A 76 GRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR-DGHEKPMNV-QSLGWNIITFKDKTDIHRLEPVKCDTLLCDI-GESS 152 (277)
T ss_dssp EEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC-TTCCCCCCC-CBTTGGGEEEECSCCTTTSCCCCCSEEEECC-CCCC
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCcceeEEEec-cCccccccc-CcCCCCeEEEeccceehhcCCCCccEEEecC-ccCc
Confidence 47999999999999987743 344455542 221000000 0112244445555555567778999999865 233
Q ss_pred ---cccchH--HHHHHHHhhCCCC-eEEEEEeCC
Q 010274 292 ---WLQRDG--ILLLELDRLLRPG-GYFVYSSPE 319 (514)
Q Consensus 292 ---~~~d~~--~lL~el~RvLrPG-G~lvis~P~ 319 (514)
+.+... .+|..+.++|+|| |.|++..-.
T Consensus 153 G~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 153 SSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 333322 2578889999999 999996643
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.10 E-value=4.4e-06 Score=86.46 Aligned_cols=94 Identities=17% Similarity=0.219 Sum_probs=66.8
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCC--CCC--------------
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPS-------------- 277 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp--~~~-------------- 277 (514)
.+|||+|||+|.++..|+. ..|+++|+++.++..+..+. +..+. ++.+..+|+.++. +..
T Consensus 215 ~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~-~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~ 293 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNI-AANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 293 (369)
T ss_dssp SEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHH-HHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGG
T ss_pred CEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHH-HHcCCCceEEEECCHHHHHHHHhhcccccccccccccc
Confidence 5799999999999999985 46899999998887776443 44444 6788888865531 111
Q ss_pred CCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
.+||+|++.--. ..+..++.++|+++|.+++.+-
T Consensus 294 ~~fD~Vv~dPPr-------~g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 294 YQCETIFVDPPR-------SGLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp CCEEEEEECCCT-------TCCCHHHHHHHTTSSEEEEEES
T ss_pred CCCCEEEECcCc-------cccHHHHHHHHhCCCEEEEEEC
Confidence 379999854311 1244567777889999888664
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.09 E-value=9.1e-06 Score=82.35 Aligned_cols=124 Identities=14% Similarity=0.051 Sum_probs=77.3
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCC---CCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPS---RSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~---~sFDlV~~s 286 (514)
..+|||+|||+|..+..|+. ..|+++|+++..+.....+ ++..+. ++.+...|...++... .+||.|++.
T Consensus 103 g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n-~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D 181 (309)
T 2b9e_A 103 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATL-LARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLD 181 (309)
T ss_dssp TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEEC
T ss_pred CCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCeEEEEeCChHhcCccccccCCCCEEEEc
Confidence 35899999999999988874 4688998888777655533 334454 5788888877765432 579999961
Q ss_pred -----cccccccc-----------ch-------HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc-C
Q 010274 287 -----RCRIDWLQ-----------RD-------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-C 342 (514)
Q Consensus 287 -----~~~l~~~~-----------d~-------~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~-G 342 (514)
...+...+ +. ..+|..+.++|+ ||+|++++-... ..++ -..+..++++. +
T Consensus 182 ~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~--~~En---e~~v~~~l~~~~~ 255 (309)
T 2b9e_A 182 PSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC--QEEN---EDVVRDALQQNPG 255 (309)
T ss_dssp CCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC--GGGT---HHHHHHHHTTSTT
T ss_pred CCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC--hHHh---HHHHHHHHHhCCC
Confidence 11221111 11 236778888887 999999875432 1222 13445566654 3
Q ss_pred -cEEE
Q 010274 343 -WKIV 346 (514)
Q Consensus 343 -f~~v 346 (514)
|+.+
T Consensus 256 ~~~~~ 260 (309)
T 2b9e_A 256 AFRLA 260 (309)
T ss_dssp TEEEC
T ss_pred cEEEe
Confidence 5543
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=8.7e-06 Score=84.87 Aligned_cols=103 Identities=20% Similarity=0.171 Sum_probs=64.4
Q ss_pred CCeEEEECCCCchHHHHHhcC---------------------CCccccCChhhhhHHH------HHHH-HHcC--CCeEE
Q 010274 216 IRNVLDVGCGVASFGAYLLSH---------------------DIIAMSLAPNDVHENQ------IQFA-LERG--IPSTL 265 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---------------------~V~gvdis~~dis~a~------~~~A-~~rg--~~~~~ 265 (514)
.-+|+|+||++|..+..+... .|..-|+..+|...-. .+.. .+.+ .+..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 468999999999888776521 1223444444442221 1212 2222 22344
Q ss_pred Eeec---CCCCCCCCCCceEEEecccccccccchH---------------------------------------HHHHHH
Q 010274 266 GVLG---TKRLPYPSRSFELAHCSRCRIDWLQRDG---------------------------------------ILLLEL 303 (514)
Q Consensus 266 ~~~d---~~~lp~~~~sFDlV~~s~~~l~~~~d~~---------------------------------------~lL~el 303 (514)
..+. ...-.||+++||+|+++. ++||+.+.. .+|+..
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~-aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCY-CLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEES-CTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecc-eeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 233458899999999888 699975432 125666
Q ss_pred HhhCCCCeEEEEEeCC
Q 010274 304 DRLLRPGGYFVYSSPE 319 (514)
Q Consensus 304 ~RvLrPGG~lvis~P~ 319 (514)
.+.|+|||+++++...
T Consensus 212 a~eL~pGG~mvl~~~g 227 (384)
T 2efj_A 212 SEELISRGRMLLTFIC 227 (384)
T ss_dssp HHHEEEEEEEEEEEEC
T ss_pred HHHhccCCeEEEEEec
Confidence 8999999999998753
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.4e-05 Score=83.57 Aligned_cols=101 Identities=14% Similarity=0.108 Sum_probs=70.1
Q ss_pred CeEEEECCCCchHHHHHhc--C----------------------------------------CCccccCChhhhhHHHHH
Q 010274 217 RNVLDVGCGVASFGAYLLS--H----------------------------------------DIIAMSLAPNDVHENQIQ 254 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~----------------------------------------~V~gvdis~~dis~a~~~ 254 (514)
.+|||.+||+|.++..++. . .|+++|+++.++..+..+
T Consensus 203 ~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~N 282 (393)
T 3k0b_A 203 RPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQN 282 (393)
T ss_dssp SCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHH
T ss_pred CeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHH
Confidence 5799999999999877662 2 378888888877766643
Q ss_pred HHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccccccc---cchHHHHHHHHhhCCC--CeEEEEEeCC
Q 010274 255 FALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL---QRDGILLLELDRLLRP--GGYFVYSSPE 319 (514)
Q Consensus 255 ~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~---~d~~~lL~el~RvLrP--GG~lvis~P~ 319 (514)
+...+. .+.+.++|+.+++.+ .+||+|+++--....+ .+...+..++.++||+ ||.+++.++.
T Consensus 283 -a~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 352 (393)
T 3k0b_A 283 -AVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSY 352 (393)
T ss_dssp -HHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECC
T ss_pred -HHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 344454 378999999888865 5899999874211112 2234456666666665 8988887754
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.05 E-value=8.6e-06 Score=84.97 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=72.4
Q ss_pred CCeEEEECCCCchHHHHHhc------------------------------------------CCCccccCChhhhhHHHH
Q 010274 216 IRNVLDVGCGVASFGAYLLS------------------------------------------HDIIAMSLAPNDVHENQI 253 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~------------------------------------------~~V~gvdis~~dis~a~~ 253 (514)
..+|||++||+|.++..++. ..|+|+|+++.++..+..
T Consensus 196 ~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~ 275 (385)
T 3ldu_A 196 GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARE 275 (385)
T ss_dssp TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHH
Confidence 35799999999999887752 247888888887776664
Q ss_pred HHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccccccc---cchHHHHHHHHhhCCC--CeEEEEEeCC
Q 010274 254 QFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL---QRDGILLLELDRLLRP--GGYFVYSSPE 319 (514)
Q Consensus 254 ~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~---~d~~~lL~el~RvLrP--GG~lvis~P~ 319 (514)
+. ...+. .+.+.+.|+.+++.+ .+||+|+++--..... .+...+..++.++||+ ||.+++.++.
T Consensus 276 Na-~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 346 (385)
T 3ldu_A 276 NA-EIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSY 346 (385)
T ss_dssp HH-HHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESC
T ss_pred HH-HHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECC
Confidence 33 34454 478899998888765 5899999865322222 2234567777777776 8888887754
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=6.6e-06 Score=90.85 Aligned_cols=117 Identities=14% Similarity=0.120 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHH---HhcC-----CCccccCChhhhhHHHHHHHHHc--CCC
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAY---LLSH-----DIIAMSLAPNDVHENQIQFALER--GIP 262 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~---La~~-----~V~gvdis~~dis~a~~~~A~~r--g~~ 262 (514)
+.|.+.|.+.+......-....+...|||||||+|.+... .+.. +|.+++-++...... +..++. +..
T Consensus 335 ~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~--~~v~~N~~~dk 412 (637)
T 4gqb_A 335 SQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTL--ENWQFEEWGSQ 412 (637)
T ss_dssp HHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHH--HHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHH--HHHHhccCCCe
Confidence 4566666654432111111223345799999999977433 2222 578898887544333 333333 345
Q ss_pred eEEEeecCCCCCCCCCCceEEEecccccccc---cchHHHHHHHHhhCCCCeEEE
Q 010274 263 STLGVLGTKRLPYPSRSFELAHCSRCRIDWL---QRDGILLLELDRLLRPGGYFV 314 (514)
Q Consensus 263 ~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~---~d~~~lL~el~RvLrPGG~lv 314 (514)
+.++.++++++..| +++|+|++-- +.+. +.-...+....|.|||||.++
T Consensus 413 VtVI~gd~eev~LP-EKVDIIVSEw--MG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 413 VTVVSSDMREWVAP-EKADIIVSEL--LGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EEEEESCTTTCCCS-SCEEEEECCC--CBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEEEeCcceeccCC-cccCEEEEEc--CcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 88899999988877 6899999621 2211 111247778899999999886
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.01 E-value=3e-05 Score=80.94 Aligned_cols=101 Identities=16% Similarity=0.118 Sum_probs=71.8
Q ss_pred CeEEEECCCCchHHHHHhc--C----------------------------------------CCccccCChhhhhHHHHH
Q 010274 217 RNVLDVGCGVASFGAYLLS--H----------------------------------------DIIAMSLAPNDVHENQIQ 254 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~----------------------------------------~V~gvdis~~dis~a~~~ 254 (514)
..+||.+||+|.++..++. . .|+|+|+++.++..+..
T Consensus 196 ~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~- 274 (384)
T 3ldg_A 196 KPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARK- 274 (384)
T ss_dssp SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH-
T ss_pred CeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHH-
Confidence 5799999999999877662 2 37888888877766663
Q ss_pred HHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccccccc---cchHHHHHHHHhhCCC--CeEEEEEeCC
Q 010274 255 FALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL---QRDGILLLELDRLLRP--GGYFVYSSPE 319 (514)
Q Consensus 255 ~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~---~d~~~lL~el~RvLrP--GG~lvis~P~ 319 (514)
.+...|. .+.+.++|+.+++.+ .+||+|+++--.-.-+ .+...+..++.+.||+ ||.+++.++.
T Consensus 275 Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 345 (384)
T 3ldg_A 275 NAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTND 345 (384)
T ss_dssp HHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESC
T ss_pred HHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECC
Confidence 3444454 478999999888866 4899999873211112 2335577777777776 9999887764
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=1e-05 Score=84.18 Aligned_cols=96 Identities=14% Similarity=0.079 Sum_probs=69.5
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHc--------------CCC-eEEEeecCCCCCC-C
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALER--------------GIP-STLGVLGTKRLPY-P 276 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~r--------------g~~-~~~~~~d~~~lp~-~ 276 (514)
.+|||+|||+|.++..++. ..|+++|+++..+..+..+..... +.. +.+..+|+..+.. .
T Consensus 49 ~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~ 128 (378)
T 2dul_A 49 KIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER 128 (378)
T ss_dssp SEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS
T ss_pred CEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhc
Confidence 5899999999999998874 257899998887776665554441 444 7777777654321 1
Q ss_pred CCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 277 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 277 ~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
.+.||+|+..- + .....++..+.+.|||||.++++.
T Consensus 129 ~~~fD~I~lDP----~-~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 129 HRYFHFIDLDP----F-GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp TTCEEEEEECC----S-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCCCEEEeCC----C-CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 35799999432 1 223578999999999999988865
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.92 E-value=9.5e-06 Score=88.34 Aligned_cols=117 Identities=16% Similarity=0.123 Sum_probs=75.3
Q ss_pred HHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc----------------------CCCccccCChhhhhHHH
Q 010274 195 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----------------------HDIIAMSLAPNDVHENQ 252 (514)
Q Consensus 195 y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~----------------------~~V~gvdis~~dis~a~ 252 (514)
..+.+.+++.. ....+|||.+||+|.|...++. ..+.|+|+++..+..+.
T Consensus 157 iv~~mv~~l~p--------~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~ 228 (541)
T 2ar0_A 157 LIKTIIHLLKP--------QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL 228 (541)
T ss_dssp HHHHHHHHHCC--------CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhcc--------CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHH
Confidence 44555666542 2235799999999998877652 24677777776665544
Q ss_pred HHHHHHcCCC------eEEEeecCCCCC-CCCCCceEEEecccccccc-------------cchHHHHHHHHhhCCCCeE
Q 010274 253 IQFALERGIP------STLGVLGTKRLP-YPSRSFELAHCSRCRIDWL-------------QRDGILLLELDRLLRPGGY 312 (514)
Q Consensus 253 ~~~A~~rg~~------~~~~~~d~~~lp-~~~~sFDlV~~s~~~l~~~-------------~d~~~lL~el~RvLrPGG~ 312 (514)
.+... .+.. ..+..+|+...+ ....+||+|+++--..... .....++..+.+.|||||+
T Consensus 229 ~nl~l-~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr 307 (541)
T 2ar0_A 229 MNCLL-HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGR 307 (541)
T ss_dssp HHHHT-TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEE
T ss_pred HHHHH-hCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCE
Confidence 33332 3433 567777765443 3456899999863211110 0113589999999999999
Q ss_pred EEEEeCCC
Q 010274 313 FVYSSPEA 320 (514)
Q Consensus 313 lvis~P~~ 320 (514)
+++..|..
T Consensus 308 ~a~V~p~~ 315 (541)
T 2ar0_A 308 AAVVVPDN 315 (541)
T ss_dssp EEEEEEHH
T ss_pred EEEEecCc
Confidence 99998764
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.90 E-value=1.6e-05 Score=78.30 Aligned_cols=82 Identities=11% Similarity=0.180 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCC
Q 010274 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK 271 (514)
Q Consensus 194 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~ 271 (514)
...+.+.+.+... ...+|||||||+|.++..|+.. .|+++|+++.++..+..+... ..++.+..+|+.
T Consensus 16 ~i~~~iv~~~~~~--------~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~ 85 (255)
T 3tqs_A 16 FVLQKIVSAIHPQ--------KTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDAL 85 (255)
T ss_dssp HHHHHHHHHHCCC--------TTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTT
T ss_pred HHHHHHHHhcCCC--------CcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchH
Confidence 3455566666532 2358999999999999999863 577887776665444322211 357889999998
Q ss_pred CCCCCC----CCceEEEec
Q 010274 272 RLPYPS----RSFELAHCS 286 (514)
Q Consensus 272 ~lp~~~----~sFDlV~~s 286 (514)
.+++++ +.|| |+++
T Consensus 86 ~~~~~~~~~~~~~~-vv~N 103 (255)
T 3tqs_A 86 QFDFSSVKTDKPLR-VVGN 103 (255)
T ss_dssp TCCGGGSCCSSCEE-EEEE
T ss_pred hCCHHHhccCCCeE-EEec
Confidence 887643 4688 5534
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=8.4e-06 Score=85.30 Aligned_cols=96 Identities=9% Similarity=0.058 Sum_probs=69.6
Q ss_pred CeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCC---eEEEeecCCCC-C-CCCCCceEEEec
Q 010274 217 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIP---STLGVLGTKRL-P-YPSRSFELAHCS 286 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~---~~~~~~d~~~l-p-~~~~sFDlV~~s 286 (514)
.+|||++||+|.++..++. ..|+++|+++..+..+..+ ++..+.. +.+..+|+..+ . ...+.||+|++.
T Consensus 54 ~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N-~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD 132 (392)
T 3axs_A 54 VKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKEN-FKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD 132 (392)
T ss_dssp EEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHH-HHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred CEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence 5899999999999998875 3588999998877666544 4444543 77888876432 1 113579999954
Q ss_pred ccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 287 ~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
- + .....++..+.++|+|||+++++..
T Consensus 133 P----~-g~~~~~l~~a~~~Lk~gGll~~t~t 159 (392)
T 3axs_A 133 P----F-GTPVPFIESVALSMKRGGILSLTAT 159 (392)
T ss_dssp C----S-SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred C----C-cCHHHHHHHHHHHhCCCCEEEEEec
Confidence 3 1 2235689999999999999988663
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=2.4e-05 Score=77.83 Aligned_cols=82 Identities=15% Similarity=0.124 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCC
Q 010274 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK 271 (514)
Q Consensus 194 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~ 271 (514)
...+.+.+.+.. ... +|||||||+|.++..|++ ..|+++|+++.++..+..+.. ..++.+..+|+.
T Consensus 34 ~i~~~Iv~~~~~--------~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~---~~~v~vi~~D~l 101 (271)
T 3fut_A 34 AHLRRIVEAARP--------FTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS---GLPVRLVFQDAL 101 (271)
T ss_dssp HHHHHHHHHHCC--------CCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT---TSSEEEEESCGG
T ss_pred HHHHHHHHhcCC--------CCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC---CCCEEEEECChh
Confidence 345566666653 223 799999999999999985 478889888877654442221 246889999998
Q ss_pred CCCCCCC-CceEEEecc
Q 010274 272 RLPYPSR-SFELAHCSR 287 (514)
Q Consensus 272 ~lp~~~~-sFDlV~~s~ 287 (514)
.+++++. .||.|+++.
T Consensus 102 ~~~~~~~~~~~~iv~Nl 118 (271)
T 3fut_A 102 LYPWEEVPQGSLLVANL 118 (271)
T ss_dssp GSCGGGSCTTEEEEEEE
T ss_pred hCChhhccCccEEEecC
Confidence 8887643 689888653
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.5e-05 Score=78.62 Aligned_cols=122 Identities=14% Similarity=0.109 Sum_probs=73.7
Q ss_pred CCCeEEEECCCCchHHHHHhc----------------CCCccccCCh---hhhhHHH------HHHHHH---c-------
Q 010274 215 NIRNVLDVGCGVASFGAYLLS----------------HDIIAMSLAP---NDVHENQ------IQFALE---R------- 259 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~----------------~~V~gvdis~---~dis~a~------~~~A~~---r------- 259 (514)
+..+|||||+|+|..+..++. .++++++..+ .++..+. ...|++ .
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 345899999999987666432 2567788776 2332210 011111 1
Q ss_pred ---------CCCeEEEeecCCC-CCCC-C---CCceEEEecccccccccc--hHHHHHHHHhhCCCCeEEEEEeCCCCCC
Q 010274 260 ---------GIPSTLGVLGTKR-LPYP-S---RSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPEAYAH 323 (514)
Q Consensus 260 ---------g~~~~~~~~d~~~-lp~~-~---~sFDlV~~s~~~l~~~~d--~~~lL~el~RvLrPGG~lvis~P~~~~~ 323 (514)
..++.+..+|+.+ ++.- + ..||+|+.-.....-.++ ...+|.++.++|||||.|+.-+ .
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tys-----a 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT-----S 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESC-----C
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEe-----C
Confidence 1234567777544 4422 2 279999963211111222 3579999999999999998522 1
Q ss_pred ChhHHHhHHHHHHHHHhcCcEEEEE
Q 010274 324 DPENRRIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 324 ~~e~~~~~~~l~~ll~~~Gf~~v~~ 348 (514)
. ..+.+.+..+||.+.+.
T Consensus 215 a-------~~vrr~L~~aGF~v~~~ 232 (257)
T 2qy6_A 215 A-------GFVRRGLQEAGFTMQKR 232 (257)
T ss_dssp B-------HHHHHHHHHHTEEEEEE
T ss_pred C-------HHHHHHHHHCCCEEEeC
Confidence 1 25677888899997754
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.77 E-value=1.5e-05 Score=88.28 Aligned_cols=97 Identities=11% Similarity=0.047 Sum_probs=65.7
Q ss_pred CCeEEEECCCCchHHHH---Hh---c-----------CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCC--
Q 010274 216 IRNVLDVGCGVASFGAY---LL---S-----------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-- 276 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~---La---~-----------~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~-- 276 (514)
...|||||||+|.+... .+ + ..|.+++-++..+...+...+..-+..+.++.++++++..+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 35799999999988532 11 2 16888988876554444333322234588889998887663
Q ss_pred ---CCCceEEEecccccccccch---HHHHHHHHhhCCCCeEEE
Q 010274 277 ---SRSFELAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFV 314 (514)
Q Consensus 277 ---~~sFDlV~~s~~~l~~~~d~---~~lL~el~RvLrPGG~lv 314 (514)
.++.|+|++-. +.+..+. ...|..+.|.|||||.++
T Consensus 490 ~~~~ekVDIIVSEl--mGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSEL--LGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTCCCCSEEEECC--CBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCcccEEEEec--cccccchhccHHHHHHHHHhCCCCcEEE
Confidence 47899999643 3333222 358888899999999876
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.69 E-value=1.4e-05 Score=82.71 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=64.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC--------------------CCccccCChhhhhHHHHHHHHH-cCCCeEEEeec---C
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH--------------------DIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLG---T 270 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~--------------------~V~gvdis~~dis~a~~~~A~~-rg~~~~~~~~d---~ 270 (514)
..-+|+|+||++|..+..+... .|..-|+..+|........... ...+..+..+. .
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3457999999999777655432 2334455555554333211100 00022333332 3
Q ss_pred CCCCCCCCCceEEEecccccccccch---------------------------------HHHHHHHHhhCCCCeEEEEEe
Q 010274 271 KRLPYPSRSFELAHCSRCRIDWLQRD---------------------------------GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 271 ~~lp~~~~sFDlV~~s~~~l~~~~d~---------------------------------~~lL~el~RvLrPGG~lvis~ 317 (514)
....||+++||+|+++. ++||+.+. ..+|+...+.|+|||+++++.
T Consensus 131 y~rlfp~~S~d~v~Ss~-aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSY-SLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSCCSCTTCBSCEEEES-CTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhccCCCCceEEEEehh-hhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 34568899999999888 69997542 225888899999999999876
Q ss_pred C
Q 010274 318 P 318 (514)
Q Consensus 318 P 318 (514)
.
T Consensus 210 ~ 210 (359)
T 1m6e_X 210 L 210 (359)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0002 Score=80.34 Aligned_cols=101 Identities=17% Similarity=0.090 Sum_probs=66.9
Q ss_pred CeEEEECCCCchHHHHHhc----------------------------------------------CCCccccCChhhhhH
Q 010274 217 RNVLDVGCGVASFGAYLLS----------------------------------------------HDIIAMSLAPNDVHE 250 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----------------------------------------------~~V~gvdis~~dis~ 250 (514)
.+|||.+||+|.++..++. ..++|+|+++.++..
T Consensus 192 ~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~~ 271 (703)
T 3v97_A 192 TPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQR 271 (703)
T ss_dssp SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHHH
T ss_pred CeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHHH
Confidence 5799999999999876552 257788888877766
Q ss_pred HHHHHHHHcCCC--eEEEeecCCCC--CCCCCCceEEEecccccccc---cchHH---HHHHHHhhCCCCeEEEEEeC
Q 010274 251 NQIQFALERGIP--STLGVLGTKRL--PYPSRSFELAHCSRCRIDWL---QRDGI---LLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 251 a~~~~A~~rg~~--~~~~~~d~~~l--p~~~~sFDlV~~s~~~l~~~---~d~~~---lL~el~RvLrPGG~lvis~P 318 (514)
+. +.+...|+. +.+.++|+.++ |..+++||+|+++--.-.-+ .+... .|.++.+.+.|||.+++.++
T Consensus 272 A~-~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~ 348 (703)
T 3v97_A 272 AR-TNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSA 348 (703)
T ss_dssp HH-HHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred HH-HHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 65 344445654 68889998777 33344899999873211111 12223 34555566678999998765
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0005 Score=71.10 Aligned_cols=117 Identities=7% Similarity=-0.093 Sum_probs=74.6
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
+.+|||+||++|.++..|++ ..|+++|..+.+. .. .....+.+...|......+...||+|+|-..
T Consensus 212 G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~--~l-----~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~----- 279 (375)
T 4auk_A 212 GMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQ--SL-----MDTGQVTWLREDGFKFRPTRSNISWMVCDMV----- 279 (375)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCH--HH-----HTTTCEEEECSCTTTCCCCSSCEEEEEECCS-----
T ss_pred CCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcCh--hh-----ccCCCeEEEeCccccccCCCCCcCEEEEcCC-----
Confidence 46899999999999999985 4688888775432 11 1235678888888887767778999998762
Q ss_pred cchHHHHHHHHh---hCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcE
Q 010274 294 QRDGILLLELDR---LLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (514)
Q Consensus 294 ~d~~~lL~el~R---vLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~ 344 (514)
.++...+.-+.+ .+..++.++..-...-....+.......+.+.++..||.
T Consensus 280 ~~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~ 333 (375)
T 4auk_A 280 EKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGIN 333 (375)
T ss_dssp SCHHHHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CChHHhHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHHHHHHhcCcc
Confidence 233344444444 444445444322222112223333456778888888875
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.62 E-value=2.2e-05 Score=77.45 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=49.0
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCCh-------hhhhHHHHHHHHHcCC--CeEEEeecCCCC-C-CCC--CCce
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAP-------NDVHENQIQFALERGI--PSTLGVLGTKRL-P-YPS--RSFE 281 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~-------~dis~a~~~~A~~rg~--~~~~~~~d~~~l-p-~~~--~sFD 281 (514)
.+|||+|||+|.++..|+. ..|+++|+++ ..+..+..+. ...+. .+.+..+|...+ + +++ ++||
T Consensus 85 ~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~-~~~~~~~ri~~~~~d~~~~l~~~~~~~~~fD 163 (258)
T 2r6z_A 85 PTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNP-ETQDTAARINLHFGNAAEQMPALVKTQGKPD 163 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSH-HHHHHHTTEEEEESCHHHHHHHHHHHHCCCS
T ss_pred CeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHH-HhhCCccCeEEEECCHHHHHHhhhccCCCcc
Confidence 5799999999999999984 5788998888 5544443222 22222 378888887653 3 344 6899
Q ss_pred EEEecc
Q 010274 282 LAHCSR 287 (514)
Q Consensus 282 lV~~s~ 287 (514)
+|++..
T Consensus 164 ~V~~dP 169 (258)
T 2r6z_A 164 IVYLDP 169 (258)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999765
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00021 Score=71.78 Aligned_cols=110 Identities=16% Similarity=0.163 Sum_probs=70.9
Q ss_pred CCCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHH-----cCCCeEEEeecCCCC-CCCCCCceEE
Q 010274 214 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE-----RGIPSTLGVLGTKRL-PYPSRSFELA 283 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~-----rg~~~~~~~~d~~~l-p~~~~sFDlV 283 (514)
+.+++||=||.|.|..+..++.. .|+.+|+++.-+.-+..-+... ...++.+...|.... .-..++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 34679999999999999998853 4566666665443332111111 124678888885443 3456789999
Q ss_pred Eeccccccccc----chHHHHHHHHhhCCCCeEEEEEeCCCCCCC
Q 010274 284 HCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYAHD 324 (514)
Q Consensus 284 ~~s~~~l~~~~----d~~~lL~el~RvLrPGG~lvis~P~~~~~~ 324 (514)
+.-. .-...+ ....+++.+.++|+|||.++.-....+...
T Consensus 162 i~D~-~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~ 205 (294)
T 3o4f_A 162 ISDC-TDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQ 205 (294)
T ss_dssp EESC-CCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCC
T ss_pred EEeC-CCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccCh
Confidence 9642 111111 125699999999999999998654444333
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00014 Score=79.16 Aligned_cols=138 Identities=13% Similarity=0.079 Sum_probs=82.7
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHh-------------------cCCCccccCChhhhhHHHHH
Q 010274 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL-------------------SHDIIAMSLAPNDVHENQIQ 254 (514)
Q Consensus 194 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La-------------------~~~V~gvdis~~dis~a~~~ 254 (514)
...+.+.+++.. ...+|||.+||+|.|...++ ...+.|+|+++....-+..+
T Consensus 232 ~Vv~lmv~ll~p---------~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~N 302 (544)
T 3khk_A 232 SIVTLIVEMLEP---------YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMN 302 (544)
T ss_dssp HHHHHHHHHHCC---------CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---------CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHH
Confidence 345556666642 11389999999999877653 22467777777666555544
Q ss_pred HHHHcCCCeEE--EeecCCCCC-CCCCCceEEEeccccc--cc----------------------ccc----hHHHHHHH
Q 010274 255 FALERGIPSTL--GVLGTKRLP-YPSRSFELAHCSRCRI--DW----------------------LQR----DGILLLEL 303 (514)
Q Consensus 255 ~A~~rg~~~~~--~~~d~~~lp-~~~~sFDlV~~s~~~l--~~----------------------~~d----~~~lL~el 303 (514)
... .+....+ ..+|....+ +.+.+||+|+++--.. .| .+. .-.++..+
T Consensus 303 l~l-~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~ 381 (544)
T 3khk_A 303 MVI-RGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHM 381 (544)
T ss_dssp HHH-TTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHH
T ss_pred HHH-hCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHH
Confidence 433 3444334 566654444 4567899999853111 01 100 12589999
Q ss_pred HhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCc
Q 010274 304 DRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 343 (514)
Q Consensus 304 ~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf 343 (514)
.+.|+|||++++..|....... ......+++.+-+.+.
T Consensus 382 l~~Lk~gGr~aiVlP~g~L~~~--~~~~~~iRk~Lle~~~ 419 (544)
T 3khk_A 382 LYHLAPTGSMALLLANGSMSSN--TNNEGEIRKTLVEQDL 419 (544)
T ss_dssp HHTEEEEEEEEEEEETHHHHCC--GGGHHHHHHHHHHTTC
T ss_pred HHHhccCceEEEEecchhhhcC--cchHHHHHHHHHhCCc
Confidence 9999999999999886431111 0123455555555444
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0002 Score=70.06 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHc-CCCeEEEeec
Q 010274 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLG 269 (514)
Q Consensus 194 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d 269 (514)
...+.+.+.+... ...+|||||||+|.++..|+.. .|+++|+++. +++.++++ ..++.+..+|
T Consensus 18 ~i~~~iv~~~~~~--------~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~-----~~~~~~~~~~~~v~~i~~D 84 (249)
T 3ftd_A 18 GVLKKIAEELNIE--------EGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDRE-----MVENLKSIGDERLEVINED 84 (249)
T ss_dssp HHHHHHHHHTTCC--------TTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHH-----HHHHHTTSCCTTEEEECSC
T ss_pred HHHHHHHHhcCCC--------CcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHH-----HHHHHHhccCCCeEEEEcc
Confidence 4555666665432 2358999999999999999864 4667766554 44555544 3357889999
Q ss_pred CCCCCCCC
Q 010274 270 TKRLPYPS 277 (514)
Q Consensus 270 ~~~lp~~~ 277 (514)
+..+++++
T Consensus 85 ~~~~~~~~ 92 (249)
T 3ftd_A 85 ASKFPFCS 92 (249)
T ss_dssp TTTCCGGG
T ss_pred hhhCChhH
Confidence 98888764
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00024 Score=77.35 Aligned_cols=123 Identities=15% Similarity=0.130 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc-------CCCccccCChhhhhHHHHHHHHHcCC---Ce
Q 010274 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-------HDIIAMSLAPNDVHENQIQFALERGI---PS 263 (514)
Q Consensus 194 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-------~~V~gvdis~~dis~a~~~~A~~rg~---~~ 263 (514)
...+.+.+++..... .....+|||.+||+|.+...++. ..+.|+|+++....-+..+... +|. +.
T Consensus 204 ~Vv~lmv~ll~~~~~----~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l-~gi~~~~~ 278 (542)
T 3lkd_A 204 PVAKLMTQIAFLGRE----DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMIL-HGVPIENQ 278 (542)
T ss_dssp HHHHHHHHHHHTTCT----TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHH-TTCCGGGE
T ss_pred HHHHHHHHHHhcccC----CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHH-cCCCcCcc
Confidence 345566666653110 12346899999999998776653 2467888777766555544433 344 35
Q ss_pred EEEeecCCCC--C-CCCCCceEEEecccc-ccc-----------------cc---c-hHHHHHHHHhhCC-CCeEEEEEe
Q 010274 264 TLGVLGTKRL--P-YPSRSFELAHCSRCR-IDW-----------------LQ---R-DGILLLELDRLLR-PGGYFVYSS 317 (514)
Q Consensus 264 ~~~~~d~~~l--p-~~~~sFDlV~~s~~~-l~~-----------------~~---d-~~~lL~el~RvLr-PGG~lvis~ 317 (514)
.+..+|+... | .....||+|+++--. ..| .+ + .-.++..+.+.|+ |||++.+..
T Consensus 279 ~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~Vl 358 (542)
T 3lkd_A 279 FLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVL 358 (542)
T ss_dssp EEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEE
T ss_pred ceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEe
Confidence 6778886655 3 346789999985210 001 00 0 1238999999999 999999998
Q ss_pred CCCC
Q 010274 318 PEAY 321 (514)
Q Consensus 318 P~~~ 321 (514)
|..+
T Consensus 359 P~g~ 362 (542)
T 3lkd_A 359 PHGV 362 (542)
T ss_dssp ETHH
T ss_pred cchH
Confidence 8753
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00013 Score=72.71 Aligned_cols=72 Identities=13% Similarity=0.152 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc--CC----CccccCChhhhhHHHHHHHHHcCCCeEEEe
Q 010274 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HD----IIAMSLAPNDVHENQIQFALERGIPSTLGV 267 (514)
Q Consensus 194 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~~----V~gvdis~~dis~a~~~~A~~rg~~~~~~~ 267 (514)
...+.+.+.+... ...+|||||||+|.++..|+. .. |+++|+++.++..+..+ + ..++.++.
T Consensus 29 ~i~~~iv~~~~~~--------~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~-~---~~~v~~i~ 96 (279)
T 3uzu_A 29 GVIDAIVAAIRPE--------RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQR-F---GELLELHA 96 (279)
T ss_dssp HHHHHHHHHHCCC--------TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHH-H---GGGEEEEE
T ss_pred HHHHHHHHhcCCC--------CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHh-c---CCCcEEEE
Confidence 3455566666532 235899999999999999984 34 88888877766555433 1 44678899
Q ss_pred ecCCCCCCCC
Q 010274 268 LGTKRLPYPS 277 (514)
Q Consensus 268 ~d~~~lp~~~ 277 (514)
+|+..+++++
T Consensus 97 ~D~~~~~~~~ 106 (279)
T 3uzu_A 97 GDALTFDFGS 106 (279)
T ss_dssp SCGGGCCGGG
T ss_pred CChhcCChhH
Confidence 9998888753
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00037 Score=66.31 Aligned_cols=90 Identities=8% Similarity=-0.045 Sum_probs=59.0
Q ss_pred CeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC----CeEEEeecCCC---------------CC
Q 010274 217 RNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGTKR---------------LP 274 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~----~~~~~~~d~~~---------------lp 274 (514)
++|||+||| .-+..|+. ..|+++|.++.-...+...++ +.+. ++.+..+++.. ++
T Consensus 32 ~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~-~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~ 108 (202)
T 3cvo_A 32 EVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLA-ANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYP 108 (202)
T ss_dssp SEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHH-HSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTT
T ss_pred CEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCCCceEEEEeCchhhhcccccccchhhhhHH
Confidence 589999996 45555553 568888888766555543333 4343 46777777433 22
Q ss_pred --------C-CCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEE
Q 010274 275 --------Y-PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 315 (514)
Q Consensus 275 --------~-~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvi 315 (514)
. ..++||+|+.-.. .....+..+.+.|+|||++++
T Consensus 109 ~~~~~i~~~~~~~~fDlIfIDg~------k~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 109 DYPLAVWRTEGFRHPDVVLVDGR------FRVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp HHHHGGGGCTTCCCCSEEEECSS------SHHHHHHHHHHHCSSCEEEEE
T ss_pred HHhhhhhccccCCCCCEEEEeCC------CchhHHHHHHHhcCCCeEEEE
Confidence 1 2368999995541 113566678899999999976
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.37 E-value=8e-05 Score=78.25 Aligned_cols=105 Identities=12% Similarity=-0.034 Sum_probs=66.6
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHc-CC-CeEEEeecCCCC-CC-CCCCceEEEeccc-
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER-GI-PSTLGVLGTKRL-PY-PSRSFELAHCSRC- 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~r-g~-~~~~~~~d~~~l-p~-~~~sFDlV~~s~~- 288 (514)
+.+|||+|||+|..+..|+. ..|+++|+++.++..+..+..... +. ++.+..+|+.+. +. ++++||+|++.-.
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDPPr 173 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPAR 173 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECCEE
T ss_pred CCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEECCCC
Confidence 36899999999999999885 468999999888876664443330 43 578888887663 32 2358999998421
Q ss_pred ------ccccccchHHHHHHHHhhC-CCCeEEEEEeCCC
Q 010274 289 ------RIDWLQRDGILLLELDRLL-RPGGYFVYSSPEA 320 (514)
Q Consensus 289 ------~l~~~~d~~~lL~el~RvL-rPGG~lvis~P~~ 320 (514)
.+..+.+...-+.++.+.| +.+..+++..++.
T Consensus 174 r~~~~grv~~led~~P~l~~~~~~l~~~~~~~~vK~sP~ 212 (410)
T 3ll7_A 174 RSGADKRVYAIADCEPDLIPLATELLPFCSSILAKLSPM 212 (410)
T ss_dssp C-----CCCCGGGEESCHHHHHHHHGGGSSEEEEEECTT
T ss_pred cCCCCceEEehhhcCCCHHHHHHHHHhhCCcEEEEcCCC
Confidence 1222222222445555543 3345666655543
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00038 Score=78.34 Aligned_cols=106 Identities=14% Similarity=0.105 Sum_probs=66.3
Q ss_pred CCeEEEECCCCchHHHHHhcC-------CCccccCChhhhhHHHHHHHHH-----cCCCe-EEEeecCCCC-CCCCCCce
Q 010274 216 IRNVLDVGCGVASFGAYLLSH-------DIIAMSLAPNDVHENQIQFALE-----RGIPS-TLGVLGTKRL-PYPSRSFE 281 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-------~V~gvdis~~dis~a~~~~A~~-----rg~~~-~~~~~d~~~l-p~~~~sFD 281 (514)
..+|||.|||+|.++..++.. .+.|+|+++..+..+..+.... .+... .+...+.... +.....||
T Consensus 322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFD 401 (878)
T 3s1s_A 322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVS 401 (878)
T ss_dssp TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEE
T ss_pred CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCC
Confidence 468999999999999887742 3578888877665442122111 22222 3333333332 23356899
Q ss_pred EEEeccccccccc---------------------------c-hHHHHHHHHhhCCCCeEEEEEeCCCC
Q 010274 282 LAHCSRCRIDWLQ---------------------------R-DGILLLELDRLLRPGGYFVYSSPEAY 321 (514)
Q Consensus 282 lV~~s~~~l~~~~---------------------------d-~~~lL~el~RvLrPGG~lvis~P~~~ 321 (514)
+|+++--...... + ...++..+.+.|+|||++++..|..+
T Consensus 402 VVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~ 469 (878)
T 3s1s_A 402 VVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQY 469 (878)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHH
T ss_pred EEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHH
Confidence 9998632111000 0 13478889999999999999998764
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0007 Score=67.76 Aligned_cols=101 Identities=15% Similarity=0.163 Sum_probs=58.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
+..+|||+||++|.|+..+++. .|.++|+...+...... ....+.++.....+.....+....+|+|+|.. +.
T Consensus 81 ~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~--~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~-AP 157 (300)
T 3eld_A 81 ITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH--MQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDI-GE 157 (300)
T ss_dssp CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC--CCBTTGGGEEEECSCCTTTSCCCCCSEEEECC-CC
T ss_pred CCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc--ccccCCceEEeecCceeeecCCCCcCEEeecC-cC
Confidence 3468999999999999999963 35566664321100000 00001122222222222334567899999865 33
Q ss_pred ccccc-----h--HHHHHHHHhhCCCC-eEEEEEeCC
Q 010274 291 DWLQR-----D--GILLLELDRLLRPG-GYFVYSSPE 319 (514)
Q Consensus 291 ~~~~d-----~--~~lL~el~RvLrPG-G~lvis~P~ 319 (514)
+ ... . ..+|.-+.++|+|| |.|++-.-.
T Consensus 158 n-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 158 S-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp C-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 3 221 1 23577778999999 999987633
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00024 Score=69.79 Aligned_cols=79 Identities=8% Similarity=0.009 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc-CC--CccccCChhhhhHHHHHHHHHcC---CCeEEEe
Q 010274 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-HD--IIAMSLAPNDVHENQIQFALERG---IPSTLGV 267 (514)
Q Consensus 194 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-~~--V~gvdis~~dis~a~~~~A~~rg---~~~~~~~ 267 (514)
...+.+.+.+... ...+|||||||+|.++. +.. .. |+++|+++.++ +.++++. .++.+..
T Consensus 8 ~i~~~iv~~~~~~--------~~~~VLEIG~G~G~lt~-l~~~~~~~v~avEid~~~~-----~~a~~~~~~~~~v~~i~ 73 (252)
T 1qyr_A 8 FVIDSIVSAINPQ--------KGQAMVEIGPGLAALTE-PVGERLDQLTVIELDRDLA-----ARLQTHPFLGPKLTIYQ 73 (252)
T ss_dssp HHHHHHHHHHCCC--------TTCCEEEECCTTTTTHH-HHHTTCSCEEEECCCHHHH-----HHHHTCTTTGGGEEEEC
T ss_pred HHHHHHHHhcCCC--------CcCEEEEECCCCcHHHH-hhhCCCCeEEEEECCHHHH-----HHHHHHhccCCceEEEE
Confidence 3445566655432 23579999999999999 763 34 77776665544 5555542 2578899
Q ss_pred ecCCCCCCCCC-----CceEEEec
Q 010274 268 LGTKRLPYPSR-----SFELAHCS 286 (514)
Q Consensus 268 ~d~~~lp~~~~-----sFDlV~~s 286 (514)
+|+..+++++. ..|.|+++
T Consensus 74 ~D~~~~~~~~~~~~~~~~~~vvsN 97 (252)
T 1qyr_A 74 QDAMTFNFGELAEKMGQPLRVFGN 97 (252)
T ss_dssp SCGGGCCHHHHHHHHTSCEEEEEE
T ss_pred CchhhCCHHHhhcccCCceEEEEC
Confidence 99888876531 34566644
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0001 Score=73.26 Aligned_cols=99 Identities=16% Similarity=0.125 Sum_probs=57.7
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc-
Q 010274 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID- 291 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~- 291 (514)
.+|||||||+|.|+.+++.. .|.++|+.......+. .. ...+.++.....++....++.+.+|+|+|.. +.+
T Consensus 92 ~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi-~~-~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDm-Apns 168 (282)
T 3gcz_A 92 GIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPI-MR-TTLGWNLIRFKDKTDVFNMEVIPGDTLLCDI-GESS 168 (282)
T ss_dssp EEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCC-CC-CBTTGGGEEEECSCCGGGSCCCCCSEEEECC-CCCC
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccc-cc-ccCCCceEEeeCCcchhhcCCCCcCEEEecC-ccCC
Confidence 48999999999999987742 3556666432111000 00 0012223333322222335567899999876 343
Q ss_pred ---cccchH--HHHHHHHhhCCCC--eEEEEEeC
Q 010274 292 ---WLQRDG--ILLLELDRLLRPG--GYFVYSSP 318 (514)
Q Consensus 292 ---~~~d~~--~lL~el~RvLrPG--G~lvis~P 318 (514)
..+... .+|.-+.++|+|| |.|++-.-
T Consensus 169 G~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF 202 (282)
T 3gcz_A 169 PSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL 202 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 222222 2577778999999 99998663
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00015 Score=73.13 Aligned_cols=70 Identities=11% Similarity=0.082 Sum_probs=49.7
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC--CC---CCCceEEEecc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YP---SRSFELAHCSR 287 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp--~~---~~sFDlV~~s~ 287 (514)
.+|||+|||+|.++..++. ..|+++|+++.++..+..+. ...+.++.+..+|...++ +. ..+||.|++..
T Consensus 28 ~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~-~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 28 KIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKL-KEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDL 106 (301)
T ss_dssp CEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHT-GGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEEC
T ss_pred CEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCcEEEEECCHHHHHHHHHhcCCCCCCEEEEcC
Confidence 5899999999999999885 35778877776665554322 222356888888877765 11 15799999643
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0025 Score=63.61 Aligned_cols=133 Identities=12% Similarity=0.101 Sum_probs=79.1
Q ss_pred CCeEEEECCCCchHHHHHh---------cCCCccccCChh-----------h---------------hhHHHHHHHHHcC
Q 010274 216 IRNVLDVGCGVASFGAYLL---------SHDIIAMSLAPN-----------D---------------VHENQIQFALERG 260 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La---------~~~V~gvdis~~-----------d---------------is~a~~~~A~~rg 260 (514)
+++|||+|+..|..+..|+ ++.|+++|.... + ...+. +...+.|
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar-~n~~~~g 185 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVR-RNFRNYD 185 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHH-HHHHHTT
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHH-HHHHHcC
Confidence 4689999999998777764 345777775321 1 11122 2223334
Q ss_pred ---CCeEEEeecCC-CCC-CCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHH
Q 010274 261 ---IPSTLGVLGTK-RLP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMY 335 (514)
Q Consensus 261 ---~~~~~~~~d~~-~lp-~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~ 335 (514)
.++.++.+++. .+| +++++||+|+.-.. .-......|..+.+.|+|||++++-+... .+... ..+.
T Consensus 186 l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD---~y~~~~~~Le~~~p~L~pGGiIv~DD~~~---~~G~~---~Av~ 256 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---LYESTWDTLTNLYPKVSVGGYVIVDDYMM---CPPCK---DAVD 256 (282)
T ss_dssp CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC---SHHHHHHHHHHHGGGEEEEEEEEESSCTT---CHHHH---HHHH
T ss_pred CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC---ccccHHHHHHHHHhhcCCCEEEEEcCCCC---CHHHH---HHHH
Confidence 35788888753 344 34578999995432 11223468999999999999999865421 12222 3444
Q ss_pred HHHHhcCcE--EEEEecceEEEecc
Q 010274 336 DLLKSMCWK--IVSKKDQTVIWAKP 358 (514)
Q Consensus 336 ~ll~~~Gf~--~v~~~~~~~iw~Kp 358 (514)
+..+..++. +........+|+|+
T Consensus 257 Ef~~~~~i~~~i~~~~~~~v~~rk~ 281 (282)
T 2wk1_A 257 EYRAKFDIADELITIDRDGVYWQRT 281 (282)
T ss_dssp HHHHHTTCCSCCEECSSSCEEEECC
T ss_pred HHHHhcCCceEEEEecCEEEEEEeC
Confidence 555666643 33333345677764
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00032 Score=69.20 Aligned_cols=93 Identities=12% Similarity=0.026 Sum_probs=56.4
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHH--HHHHHHc----C---CCeEEEeecCCC-CCCCCCCceEEE
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQ--IQFALER----G---IPSTLGVLGTKR-LPYPSRSFELAH 284 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~--~~~A~~r----g---~~~~~~~~d~~~-lp~~~~sFDlV~ 284 (514)
.+|||+|||+|..+..++. ..|+++|.++....-.. ++.+.+. + .++.+..+|..+ ++....+||+|+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV~ 169 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEEE
Confidence 5799999999999999883 57899999885422221 2222211 1 246778888654 342224799999
Q ss_pred ecccccccccchHHHHHHHHhhCCCCe
Q 010274 285 CSRCRIDWLQRDGILLLELDRLLRPGG 311 (514)
Q Consensus 285 ~s~~~l~~~~d~~~lL~el~RvLrPGG 311 (514)
+.- ..++ ......+++..++||+.+
T Consensus 170 lDP-~y~~-~~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 170 LDP-MFPH-KQKSALVKKEMRVFQSLV 194 (258)
T ss_dssp ECC-CCCC-CCC-----HHHHHHHHHS
T ss_pred EcC-CCCC-cccchHHHHHHHHHHHhh
Confidence 765 2333 223356677777777755
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0061 Score=59.83 Aligned_cols=90 Identities=19% Similarity=0.192 Sum_probs=54.0
Q ss_pred CCeEEEECCCCchHHHHHhcC--------CCcccc--CChhhhhHHHHHHHHHcCCCe-EEEee-cCCCCCCCCCCceEE
Q 010274 216 IRNVLDVGCGVASFGAYLLSH--------DIIAMS--LAPNDVHENQIQFALERGIPS-TLGVL-GTKRLPYPSRSFELA 283 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--------~V~gvd--is~~dis~a~~~~A~~rg~~~-~~~~~-d~~~lp~~~~sFDlV 283 (514)
..+|||+||+.|+++.+.++. .++++| +.|.+.. ..|.++ .+.++ |...++ ...+|+|
T Consensus 74 g~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~--------~~Gv~~i~~~~G~Df~~~~--~~~~DvV 143 (269)
T 2px2_A 74 IGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQ--------SYGWNIVTMKSGVDVFYKP--SEISDTL 143 (269)
T ss_dssp CEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCC--------STTGGGEEEECSCCGGGSC--CCCCSEE
T ss_pred CCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCccc--------CCCceEEEeeccCCccCCC--CCCCCEE
Confidence 368999999999999998864 234444 2222110 012222 33335 666543 4579999
Q ss_pred Eecccccccccc----hH---HHHHHHHhhCCCCe-EEEEEe
Q 010274 284 HCSRCRIDWLQR----DG---ILLLELDRLLRPGG-YFVYSS 317 (514)
Q Consensus 284 ~~s~~~l~~~~d----~~---~lL~el~RvLrPGG-~lvis~ 317 (514)
+|-.+ -. ... .. .+|.-+.++|+||| .|++-.
T Consensus 144 LSDMA-Pn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKV 183 (269)
T 2px2_A 144 LCDIG-ES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKI 183 (269)
T ss_dssp EECCC-CC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred EeCCC-CC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 98542 22 211 11 14666669999999 888754
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0014 Score=59.09 Aligned_cols=77 Identities=17% Similarity=0.222 Sum_probs=51.8
Q ss_pred CeEEEECCCCc-hHHHHHhc-C--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCC--CCceEEEeccccc
Q 010274 217 RNVLDVGCGVA-SFGAYLLS-H--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPS--RSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG-~~a~~La~-~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~--~sFDlV~~s~~~l 290 (514)
.+|||||||.| ..+..|++ . .|+++|+++..+. ++..|+.+ |..+ ..||+|++.+.
T Consensus 37 ~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~---------------~v~dDiF~-P~~~~Y~~~DLIYsirP-- 98 (153)
T 2k4m_A 37 TRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG---------------IVRDDITS-PRMEIYRGAALIYSIRP-- 98 (153)
T ss_dssp SEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT---------------EECCCSSS-CCHHHHTTEEEEEEESC--
T ss_pred CcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc---------------eEEccCCC-CcccccCCcCEEEEcCC--
Confidence 58999999999 69999985 4 4788888887664 55556554 3222 37999996663
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEE
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVY 315 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvi 315 (514)
.++....+.++.+.+ |.-++|
T Consensus 99 --P~El~~~i~~lA~~v--~adliI 119 (153)
T 2k4m_A 99 --PAEIHSSLMRVADAV--GARLII 119 (153)
T ss_dssp --CTTTHHHHHHHHHHH--TCEEEE
T ss_pred --CHHHHHHHHHHHHHc--CCCEEE
Confidence 344455566666554 344554
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.013 Score=63.43 Aligned_cols=119 Identities=14% Similarity=0.118 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc-----------------CCCccccCChhhhhHHHHHH
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----------------HDIIAMSLAPNDVHENQIQF 255 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-----------------~~V~gvdis~~dis~a~~~~ 255 (514)
...++.+.+++.. ....+|+|-.||+|.|.....+ ..+.|.|+.+....-+..+.
T Consensus 203 ~~Vv~lmv~l~~p--------~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl 274 (530)
T 3ufb_A 203 RPVVRFMVEVMDP--------QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNL 274 (530)
T ss_dssp HHHHHHHHHHHCC--------CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc--------CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHH
Confidence 3456667777653 2235799999999999766542 24677877776665555555
Q ss_pred HHHcCCCeEEEeecCCCCCC----CCCCceEEEeccccc-cc-----------c--cch-HHHHHHHHhhCC-------C
Q 010274 256 ALERGIPSTLGVLGTKRLPY----PSRSFELAHCSRCRI-DW-----------L--QRD-GILLLELDRLLR-------P 309 (514)
Q Consensus 256 A~~rg~~~~~~~~d~~~lp~----~~~sFDlV~~s~~~l-~~-----------~--~d~-~~lL~el~RvLr-------P 309 (514)
.........+..+|....|+ ....||+|+++--.- .+ . .+. -.++..+.+.|| |
T Consensus 275 ~lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~ 354 (530)
T 3ufb_A 275 LLHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDN 354 (530)
T ss_dssp HHHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSS
T ss_pred HhcCCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCC
Confidence 44433334566667655443 235799999853110 00 0 011 236777778876 7
Q ss_pred CeEEEEEeCC
Q 010274 310 GGYFVYSSPE 319 (514)
Q Consensus 310 GG~lvis~P~ 319 (514)
||++.+..|.
T Consensus 355 gGr~avVlP~ 364 (530)
T 3ufb_A 355 GGRAAVVVPN 364 (530)
T ss_dssp CCEEEEEEEH
T ss_pred CceEEEEecc
Confidence 9999999985
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0042 Score=64.08 Aligned_cols=105 Identities=17% Similarity=0.132 Sum_probs=66.4
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcC-------CCeEEEeecCCCCC-CCCCCceEE
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERG-------IPSTLGVLGTKRLP-YPSRSFELA 283 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg-------~~~~~~~~d~~~lp-~~~~sFDlV 283 (514)
+.+|||+.+|.|.=+.+|+. ..|++.|++..-+.... +.++..+ .++.+...|...++ ...+.||.|
T Consensus 149 g~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~-~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~V 227 (359)
T 4fzv_A 149 GDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQ-KILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRV 227 (359)
T ss_dssp TEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHH-HHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEEE
T ss_pred CCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHH-HHHHHhhhhhhccCCceEEEeCchhhcchhccccCCEE
Confidence 45899999999988888774 24667777654433222 2222222 24566666665553 345789999
Q ss_pred Ee----cc---cccc------cccc----------hHHHHHHHHhhCCCCeEEEEEeCCCC
Q 010274 284 HC----SR---CRID------WLQR----------DGILLLELDRLLRPGGYFVYSSPEAY 321 (514)
Q Consensus 284 ~~----s~---~~l~------~~~d----------~~~lL~el~RvLrPGG~lvis~P~~~ 321 (514)
++ |. .++. +... ...+|..+.+.|||||+|+.++-...
T Consensus 228 LlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 228 LVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp EEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred EECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 95 32 1111 1000 13488899999999999999986654
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0036 Score=64.89 Aligned_cols=119 Identities=10% Similarity=0.010 Sum_probs=69.9
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcC-------------CCeEEEeecCCCC----CCCCC
Q 010274 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG-------------IPSTLGVLGTKRL----PYPSR 278 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg-------------~~~~~~~~d~~~l----p~~~~ 278 (514)
+++||=||.|.|..+..++..... .+...++.+..++.+++.. .++.+...|.... .-..+
T Consensus 206 pkrVLIIGgGdG~~~revlkh~~~--~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 206 GKDVLILGGGDGGILCEIVKLKPK--MVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TCEEEEEECTTCHHHHHHHTTCCS--EEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCeEEEECCCcHHHHHHHHhcCCc--eeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 578999999999999998864322 2222345555666666532 1245566664321 11346
Q ss_pred CceEEEecccccccccc---------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc
Q 010274 279 SFELAHCSRCRIDWLQR---------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 341 (514)
Q Consensus 279 sFDlV~~s~~~l~~~~d---------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~ 341 (514)
+||+|+.-..-.....+ ...+++.+.++|+|||.++......+ ..+ ....+.+.+++.
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~--~~~---~~~~i~~tl~~v 350 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVN--LTE---ALSLYEEQLGRL 350 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETT--CHH---HHHHHHHHHTTS
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCc--chh---HHHHHHHHHHHh
Confidence 79999954210000011 14578899999999999987443222 122 234555666665
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.11 Score=51.89 Aligned_cols=99 Identities=17% Similarity=0.238 Sum_probs=60.8
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCC-eEEEee-cCCCCCCCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIP-STLGVL-GTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~-~~~~~~-d~~~lp~~~~sFDlV~~s~~~l 290 (514)
.+||||||++|.|+.+.+. ..|.++|+-.....+.+. .++.+-+ +.+... |+..++. ..+|+|+|-..
T Consensus 96 ~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~--~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ivcDig-- 169 (321)
T 3lkz_A 96 GKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQL--VQSYGWNIVTMKSGVDVFYRPS--ECCDTLLCDIG-- 169 (321)
T ss_dssp EEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCC--CCBTTGGGEEEECSCCTTSSCC--CCCSEEEECCC--
T ss_pred CEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcch--hhhcCCcceEEEeccCHhhCCC--CCCCEEEEECc--
Confidence 4899999999999998773 257788886653321110 0011111 445544 5555553 56999998653
Q ss_pred ccccch----H---HHHHHHHhhCCCC-eEEEEEeCCCC
Q 010274 291 DWLQRD----G---ILLLELDRLLRPG-GYFVYSSPEAY 321 (514)
Q Consensus 291 ~~~~d~----~---~lL~el~RvLrPG-G~lvis~P~~~ 321 (514)
+-.+++ . .+|.-+.+.|++| |-|++-.-..|
T Consensus 170 eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY 208 (321)
T 3lkz_A 170 ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPY 208 (321)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCC
Confidence 333332 1 1566667889999 88888664443
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0043 Score=78.44 Aligned_cols=97 Identities=16% Similarity=0.250 Sum_probs=40.5
Q ss_pred CeEEEECCCCchHHHHHhcC---------CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCC-CCCCCCceEEEec
Q 010274 217 RNVLDVGCGVASFGAYLLSH---------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELAHCS 286 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~---------~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~l-p~~~~sFDlV~~s 286 (514)
.+||+||.|+|..+..+.+. ..+..|+++.....++.++.. .++.....|.... ++...+||+|+++
T Consensus 1242 ~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~---~di~~~~~d~~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A 1242 MKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQ---LHVTQGQWDPANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp EEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHH---HTEEEECCCSSCCCC-----CCEEEEE
T ss_pred ceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhh---cccccccccccccccCCCCceeEEEEc
Confidence 58999999999765544311 223445554433333322221 1222222233222 3445689999988
Q ss_pred ccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 287 ~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+ ++|-..+....|.++.++|||||++++..
T Consensus 1319 ~-vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1319 C-ALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp C-C--------------------CCEEEEEE
T ss_pred c-cccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 8 67777888889999999999999998864
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.07 Score=51.82 Aligned_cols=97 Identities=15% Similarity=0.168 Sum_probs=61.3
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcC-CCeEEEee-cCCCCCCCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVL-GTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~-d~~~lp~~~~sFDlV~~s~~~l 290 (514)
.+|||+||++|.++.+.+. ..|.++|+-+....+.+. .+..| ..+.|..+ |...++- ..+|.|+|...
T Consensus 80 ~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~--~~s~gwn~v~fk~gvDv~~~~~--~~~DtllcDIg-- 153 (267)
T 3p8z_A 80 GRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVP--MSTYGWNIVKLMSGKDVFYLPP--EKCDTLLCDIG-- 153 (267)
T ss_dssp EEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC--CCCTTTTSEEEECSCCGGGCCC--CCCSEEEECCC--
T ss_pred CEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcch--hhhcCcCceEEEeccceeecCC--ccccEEEEecC--
Confidence 4899999999999998774 357888887654422110 01223 23567766 6555553 56999999652
Q ss_pred ccccch----H---HHHHHHHhhCCCCeEEEEEeCCC
Q 010274 291 DWLQRD----G---ILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 291 ~~~~d~----~---~lL~el~RvLrPGG~lvis~P~~ 320 (514)
+-.+++ . .+|+-+.+.|++ |-|++-.-..
T Consensus 154 eSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~p 189 (267)
T 3p8z_A 154 ESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNP 189 (267)
T ss_dssp CCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCC
T ss_pred CCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccC
Confidence 122222 1 156666788998 7888755433
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.049 Score=54.10 Aligned_cols=94 Identities=20% Similarity=0.248 Sum_probs=57.5
Q ss_pred CeEEEeecCCC-CC-CCCCCceEEEeccccc---c----------------cccchHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 262 PSTLGVLGTKR-LP-YPSRSFELAHCSRCRI---D----------------WLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 262 ~~~~~~~d~~~-lp-~~~~sFDlV~~s~~~l---~----------------~~~d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
...+..+|..+ ++ +++++||+|+++--.. . +......++.++.|+|||||.+++.....
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~ 100 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDV 100 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCC
Confidence 34677777544 32 4578999999863211 0 11112457889999999999999876543
Q ss_pred CC-CChhH----HHhHHHHHHHHHhcCcEEEEEecceEEEeccC
Q 010274 321 YA-HDPEN----RRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 359 (514)
Q Consensus 321 ~~-~~~e~----~~~~~~l~~ll~~~Gf~~v~~~~~~~iw~Kp~ 359 (514)
.. ..... ......+..++++.||.... ..+|.|+.
T Consensus 101 ~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~----~iiW~K~~ 140 (297)
T 2zig_A 101 AVARRRFGRHLVFPLHADIQVRCRKLGFDNLN----PIIWHKHT 140 (297)
T ss_dssp EEECC----EEEECHHHHHHHHHHHTTCEEEE----EEEEECC-
T ss_pred ccccccCCcccccccHHHHHHHHHHcCCeeec----cEEEeCCC
Confidence 21 00000 01234677888999997653 45899875
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.17 Score=50.95 Aligned_cols=76 Identities=11% Similarity=0.040 Sum_probs=48.8
Q ss_pred eEEEeecCCC-CC-CCCCCceEEEecccccccccch--HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHH
Q 010274 263 STLGVLGTKR-LP-YPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLL 338 (514)
Q Consensus 263 ~~~~~~d~~~-lp-~~~~sFDlV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll 338 (514)
..+..+|+.. ++ +++..||+|+--...-.-.++. ..+++.++++++|||.|+=-+ .. ..+++-|
T Consensus 168 L~l~~GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt-----aa-------g~VRR~L 235 (308)
T 3vyw_A 168 LKVLLGDARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS-----SS-------LSVRKSL 235 (308)
T ss_dssp EEEEESCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC-----CC-------HHHHHHH
T ss_pred EEEEechHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe-----Cc-------HHHHHHH
Confidence 3455666432 33 3445799998533112212222 679999999999999988311 11 3678899
Q ss_pred HhcCcEEEEEec
Q 010274 339 KSMCWKIVSKKD 350 (514)
Q Consensus 339 ~~~Gf~~v~~~~ 350 (514)
+++||.+.+...
T Consensus 236 ~~aGF~V~k~~G 247 (308)
T 3vyw_A 236 LTLGFKVGSSRE 247 (308)
T ss_dssp HHTTCEEEEEEC
T ss_pred HHCCCEEEecCC
Confidence 999999876544
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.38 E-value=0.067 Score=53.15 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=30.5
Q ss_pred CeEEEECCCCchHHHHHh--cCCCccccCChhhhhHHHHHH
Q 010274 217 RNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHENQIQF 255 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La--~~~V~gvdis~~dis~a~~~~ 255 (514)
..|||++||+|.++..++ ++.++++|+++..+..+..+.
T Consensus 237 ~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~ 277 (297)
T 2zig_A 237 DVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERF 277 (297)
T ss_dssp CEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence 589999999999988877 467889988887765555433
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.079 Score=53.01 Aligned_cols=107 Identities=12% Similarity=0.026 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECC------CCchHHHH-Hhc--CCCccccCChhhhhHHHHHHHHHcCCCe
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGC------GVASFGAY-LLS--HDIIAMSLAPNDVHENQIQFALERGIPS 263 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGC------GtG~~a~~-La~--~~V~gvdis~~dis~a~~~~A~~rg~~~ 263 (514)
.+|. ++-+.+....-.++ ...+|||+|+ -.|++... +.. ..|+++|+.+... ..+
T Consensus 91 ~kyt-qlcqyl~~~~~~vp---~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s-----------da~- 154 (344)
T 3r24_A 91 AKYT-QLCQYLNTLTLAVP---YNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS-----------DAD- 154 (344)
T ss_dssp HHHH-HHHHHHTTSCCCCC---TTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC-----------SSS-
T ss_pred HHHH-HHHHHhccccEeec---CCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc-----------CCC-
Confidence 4454 35555543322333 3468999996 66765333 222 2577888876542 112
Q ss_pred EEEeecCCCCCCCCCCceEEEeccccccc-----ccc-----h-HHHHHHHHhhCCCCeEEEEEe
Q 010274 264 TLGVLGTKRLPYPSRSFELAHCSRCRIDW-----LQR-----D-GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 264 ~~~~~d~~~lp~~~~sFDlV~~s~~~l~~-----~~d-----~-~~lL~el~RvLrPGG~lvis~ 317 (514)
.++++|...... .+.||+|+|-.+ -.- .+. . +.++.-+.++|+|||.|++-.
T Consensus 155 ~~IqGD~~~~~~-~~k~DLVISDMA-PNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKV 217 (344)
T 3r24_A 155 STLIGDCATVHT-ANKWDLIISDMY-DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI 217 (344)
T ss_dssp EEEESCGGGEEE-SSCEEEEEECCC-CTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEcccccccc-CCCCCEEEecCC-CCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEE
Confidence 457788654432 478999998321 110 111 2 446666788999999999865
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.94 E-value=0.065 Score=54.06 Aligned_cols=94 Identities=15% Similarity=0.265 Sum_probs=58.5
Q ss_pred eEEEeecCCC-CC-CCCCCceEEEecccc-------------cccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCCh--
Q 010274 263 STLGVLGTKR-LP-YPSRSFELAHCSRCR-------------IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDP-- 325 (514)
Q Consensus 263 ~~~~~~d~~~-lp-~~~~sFDlV~~s~~~-------------l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~-- 325 (514)
..+..+|... +. +++++||+|++.--. .+|.......|.++.|+|+|||.+++.....+....
T Consensus 15 ~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~~ 94 (323)
T 1boo_A 15 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPA 94 (323)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEEE
T ss_pred ceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCcc
Confidence 4556666432 32 457889999986311 012223466899999999999999997654321100
Q ss_pred hHHHhHHHHHHHHHhcCcEEEEEecceEEEeccCc
Q 010274 326 ENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPIS 360 (514)
Q Consensus 326 e~~~~~~~l~~ll~~~Gf~~v~~~~~~~iw~Kp~~ 360 (514)
.....+..+.++++..||... ...+|+|+..
T Consensus 95 ~~~~~~~~i~~~~~~~Gf~~~----~~iiW~k~~~ 125 (323)
T 1boo_A 95 RSIYNFRVLIRMIDEVGFFLA----EDFYWFNPSK 125 (323)
T ss_dssp ECCHHHHHHHHHHHTTCCEEE----EEEEEECSSC
T ss_pred cccchHHHHHHHHHhCCCEEE----EEEEEecCCC
Confidence 001234556667889999765 3568988754
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=91.79 E-value=0.13 Score=51.14 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=46.3
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC-----CCCCCceEEEec
Q 010274 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----YPSRSFELAHCS 286 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp-----~~~~sFDlV~~s 286 (514)
..+||.+||.|..+..|++. .|+|+|.++..+..+.. . +. .++.++..+...++ ...++||.|++.
T Consensus 24 g~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L--~~-~rv~lv~~~f~~l~~~L~~~g~~~vDgIL~D 96 (285)
T 1wg8_A 24 GVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-L--HL-PGLTVVQGNFRHLKRHLAALGVERVDGILAD 96 (285)
T ss_dssp CEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-T--CC-TTEEEEESCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred CEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-h--cc-CCEEEEECCcchHHHHHHHcCCCCcCEEEeC
Confidence 58999999999999999863 67888887766654432 1 11 35777777766553 123579999864
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=90.06 E-value=0.87 Score=46.16 Aligned_cols=122 Identities=12% Similarity=0.041 Sum_probs=68.3
Q ss_pred CeEEEECCCCchHHHHHhcCC-----CccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCC---CCCCceEEEeccc
Q 010274 217 RNVLDVGCGVASFGAYLLSHD-----IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY---PSRSFELAHCSRC 288 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~-----V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~---~~~sFDlV~~s~~ 288 (514)
.+|||+-||.|.++..+..+. |.++|+++ ..++..+.+.....+...|+..+.. +...+|+|+.+.-
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~-----~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpP 77 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNT-----VANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPP 77 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCH-----HHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCH-----HHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCC
Confidence 479999999999988887532 45565544 4445555555455566677766541 1125899997431
Q ss_pred -----ccc---cccchH-HHHHH---HHhhCC--CCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEE
Q 010274 289 -----RID---WLQRDG-ILLLE---LDRLLR--PGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 289 -----~l~---~~~d~~-~lL~e---l~RvLr--PGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~ 348 (514)
... ...|.. .++.+ +.+.++ |.-.++=-++... ....+..+.+.++++||.+...
T Consensus 78 Cq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~l~-----~~~~~~~i~~~l~~~GY~v~~~ 146 (343)
T 1g55_A 78 CQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFE-----VSSTRDLLIQTIENCGFQYQEF 146 (343)
T ss_dssp ------------------CHHHHHHHHGGGCSSCCSEEEEEEETTGG-----GSHHHHHHHHHHHHTTEEEEEE
T ss_pred CcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCCEEEEeCCcccc-----CHHHHHHHHHHHHHCCCeeEEE
Confidence 000 012221 24444 444555 6544441222221 1235678888899999977643
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=89.08 E-value=0.49 Score=52.36 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=41.0
Q ss_pred CCCceEEEecccccccccc--hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 277 SRSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 277 ~~sFDlV~~s~~~l~~~~d--~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
+..||+++.-...-...++ ...++..+.++++|||.+.-..-. ..+++.+.++||.+....
T Consensus 169 ~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~------------~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 169 NNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFTAA------------GFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp TTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESCCC------------HHHHHHHHHTTCEEEEEE
T ss_pred CCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEeccCc------------HHHHHHHHhCCeEEEecc
Confidence 4679999853311111122 167999999999999998742211 367888999999887644
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=88.74 E-value=2.6 Score=43.24 Aligned_cols=121 Identities=16% Similarity=0.032 Sum_probs=70.3
Q ss_pred CeEEEECCCCchHHHHHhcCC---CccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCC--------CCCCceEEEe
Q 010274 217 RNVLDVGCGVASFGAYLLSHD---IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY--------PSRSFELAHC 285 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~---V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~--------~~~sFDlV~~ 285 (514)
.++||+-||.|.++.-+..+. +.++|+++ ...+..+.+.....+...|+..+.. ....+|+|+.
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~-----~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~g 77 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQ-----HAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIG 77 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCH-----HHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEE
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCH-----HHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEe
Confidence 369999999999988876532 34565554 3344445555556667777766531 2357999996
Q ss_pred cccccc-------cccch-HHHHH---HHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEE
Q 010274 286 SRCRID-------WLQRD-GILLL---ELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (514)
Q Consensus 286 s~~~l~-------~~~d~-~~lL~---el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~ 345 (514)
..---. -..|. ..++. ++.+.++|.-.++=-++.... ......++.+. .++++||.+
T Consensus 78 gpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~~v~ENV~gl~s--~~~~~~~~~i~-~l~~~GY~v 145 (376)
T 3g7u_A 78 GPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPLFFLAENVPGIMQ--EKYSGIRNKAF-NLVSGDYDI 145 (376)
T ss_dssp CCCCCTTC-------CHHHHHHHHHHHHHHHHHCCSEEEEEECTTTTC--GGGHHHHHHHH-HHHHTTEEE
T ss_pred cCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCCEEEEecchHhhc--cCcHHHHHHHH-HHHcCCCcc
Confidence 421000 11222 22333 455556886544433333321 22334577788 899999987
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=88.47 E-value=0.65 Score=44.98 Aligned_cols=50 Identities=12% Similarity=-0.010 Sum_probs=35.5
Q ss_pred HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecceEEEeccC
Q 010274 297 GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 359 (514)
Q Consensus 297 ~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~~~iw~Kp~ 359 (514)
...|.++.|+|+|||.+++...+. ....+..++.+.||.... ..+|+|+.
T Consensus 54 ~~~l~~~~~~Lk~~g~i~v~~~d~---------~~~~~~~~~~~~gf~~~~----~iiW~K~~ 103 (260)
T 1g60_A 54 YRWIDKVLDKLDKDGSLYIFNTPF---------NCAFICQYLVSKGMIFQN----WITWDKRD 103 (260)
T ss_dssp HHHHHHHHHHEEEEEEEEEEECHH---------HHHHHHHHHHHTTCEEEE----EEEECCCC
T ss_pred HHHHHHHHHHhcCCeEEEEEcCcH---------HHHHHHHHHHhhccceeE----EEEEEecC
Confidence 558889999999999999864110 123455677888996543 56899875
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=87.57 E-value=1 Score=49.61 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=41.3
Q ss_pred CCCceEEEecccccccccc--hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 277 SRSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 277 ~~sFDlV~~s~~~l~~~~d--~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
...||+++.-...-.-.++ ...++..+.++++|||.+.-..-. ..+++.++++||.+....
T Consensus 177 ~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~------------~~vr~~L~~aGf~v~~~~ 239 (676)
T 3ps9_A 177 NQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSA------------GFVRRGLQDAGFTMQKRK 239 (676)
T ss_dssp TTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCCC------------HHHHHHHHHHTCEEEEEE
T ss_pred CCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEeccCc------------HHHHHHHHhCCeEEEecc
Confidence 3679999853311111122 266999999999999998742211 367888999999877644
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=87.09 E-value=5.5 Score=39.74 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=61.4
Q ss_pred CCeEEEECCCCchHHHHHh-cCCCccccCChhhhhHHHHHHHHHc----CCCeEEEeecCCCCCCC----CCCc----eE
Q 010274 216 IRNVLDVGCGVASFGAYLL-SHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYP----SRSF----EL 282 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La-~~~V~gvdis~~dis~a~~~~A~~r----g~~~~~~~~d~~~lp~~----~~sF----Dl 282 (514)
++.|++||||.=..+..+. ...+..++++-.++-....+...+. ..+..++..|+.+ .+. ...| =.
T Consensus 103 ~~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt 181 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSART 181 (310)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCE
T ss_pred CCeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCE
Confidence 3579999999988887776 2234444443223322222333322 2234566666554 210 1112 24
Q ss_pred EEecccccccccch--HHHHHHHHhhCCCCeEEEEEeCC
Q 010274 283 AHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 283 V~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~ 319 (514)
++...++++|+++. ..+++.+...+.||+++++....
T Consensus 182 ~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~ 220 (310)
T 2uyo_A 182 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP 220 (310)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred EEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 55566689988664 55899999999999999997643
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=84.87 E-value=1.9 Score=43.54 Aligned_cols=100 Identities=14% Similarity=0.189 Sum_probs=61.0
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHc----------------------CCCeEEEeecCC
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER----------------------GIPSTLGVLGTK 271 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~r----------------------g~~~~~~~~d~~ 271 (514)
...|+.+|||..+....|.. ..+..+|++-.++-+...+...+. ..+..++-.|+.
T Consensus 98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL~ 177 (334)
T 1rjd_A 98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLN 177 (334)
T ss_dssp SEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCTT
T ss_pred CcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCCC
Confidence 35799999999999888874 455556665333433333333332 134556666655
Q ss_pred CCC--------C-CCCCceEEEecccccccccch--HHHHHHHHhhCCCCeEEEEEe
Q 010274 272 RLP--------Y-PSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 272 ~lp--------~-~~~sFDlV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~ 317 (514)
+.. . ......+++ +.+++.|++.. ..+++.+.+.. |+|.+++.+
T Consensus 178 d~~w~~~ll~~~~d~~~Ptl~i-aEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e 232 (334)
T 1rjd_A 178 DITETTRLLDVCTKREIPTIVI-SECLLCYMHNNESQLLINTIMSKF-SHGLWISYD 232 (334)
T ss_dssp CHHHHHHHHHTTCCTTSCEEEE-EESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEE
T ss_pred CcHHHHHHHHhcCCCCCCEEEE-EcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEe
Confidence 421 1 223456666 55578888654 55788888877 777776443
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=84.14 E-value=1.6 Score=43.87 Aligned_cols=80 Identities=19% Similarity=0.322 Sum_probs=48.1
Q ss_pred CCCCCceEEEecccc----------cccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcC-c
Q 010274 275 YPSRSFELAHCSRCR----------IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-W 343 (514)
Q Consensus 275 ~~~~sFDlV~~s~~~----------l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~G-f 343 (514)
+++++||+|++.--- -.|.......|.++.|+|+|||.+++..........+ ......+...+...| |
T Consensus 54 l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~~~~~-~~~l~~l~~~i~~~G~~ 132 (319)
T 1eg2_A 54 LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAG-SGDLISIISHMRQNSKM 132 (319)
T ss_dssp SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTT-BCCHHHHHHHHHHHCCC
T ss_pred CccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcccccccc-cccHHHHHHHHhCcccc
Confidence 346789999875310 0122233567889999999999999976543220000 011234455666677 8
Q ss_pred EEEEEecceEEEeccC
Q 010274 344 KIVSKKDQTVIWAKPI 359 (514)
Q Consensus 344 ~~v~~~~~~~iw~Kp~ 359 (514)
.... ..+|+|+.
T Consensus 133 ~~~~----~IIW~K~~ 144 (319)
T 1eg2_A 133 LLAN----LIIWNYPN 144 (319)
T ss_dssp EEEE----EEEEECSC
T ss_pred eeEE----EEEEECCC
Confidence 7664 45898875
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.99 E-value=0.9 Score=46.01 Aligned_cols=90 Identities=14% Similarity=0.103 Sum_probs=55.3
Q ss_pred CCeEEEECCCC-chHHHHHhc---C-CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCC---CC-CCCCCCceEEEec
Q 010274 216 IRNVLDVGCGV-ASFGAYLLS---H-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK---RL-PYPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La~---~-~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~---~l-p~~~~sFDlV~~s 286 (514)
..+||-+|+|. |.++..++. . .|++++ .++...+.+++.|....+...+.. .+ ....+.||+|+-.
T Consensus 191 g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~-----~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~ 265 (371)
T 1f8f_A 191 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVD-----IVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALES 265 (371)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEE-----SCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEC-----CCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEEC
Confidence 46899999875 667777664 3 345554 445566777777764333211100 00 0112379999844
Q ss_pred ccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 287 ~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
.. ....+.++.+.|++||++++..
T Consensus 266 ~g-------~~~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 266 TG-------SPEILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp SC-------CHHHHHHHHHTEEEEEEEEECC
T ss_pred CC-------CHHHHHHHHHHHhcCCEEEEeC
Confidence 32 1357889999999999999764
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=82.63 E-value=1.4 Score=44.32 Aligned_cols=90 Identities=16% Similarity=0.124 Sum_probs=54.5
Q ss_pred CCeEEEECCCC-chHHHHHhc---C-CCccccCChhhhhHHHHHHHHHcCCCeEEEeec--CC----CCC-CCCCCceEE
Q 010274 216 IRNVLDVGCGV-ASFGAYLLS---H-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG--TK----RLP-YPSRSFELA 283 (514)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La~---~-~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d--~~----~lp-~~~~sFDlV 283 (514)
..+||-+|+|. |.++..++. . .|+++ +.++...+.+++.|....+...+ .. .+. ...+.||+|
T Consensus 172 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~-----~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~v 246 (356)
T 1pl8_A 172 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVT-----DLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVT 246 (356)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEE-----ESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEE-----CCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEE
Confidence 46899999874 666666664 2 34444 44555667787777653332110 00 000 001469999
Q ss_pred EecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 284 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 284 ~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+-... ....+.+..++|+|||++++..
T Consensus 247 id~~g-------~~~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 247 IECTG-------AEASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp EECSC-------CHHHHHHHHHHSCTTCEEEECS
T ss_pred EECCC-------ChHHHHHHHHHhcCCCEEEEEe
Confidence 84431 1346788899999999999865
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=82.50 E-value=3.8 Score=41.24 Aligned_cols=122 Identities=12% Similarity=0.140 Sum_probs=68.6
Q ss_pred CeEEEECCCCchHHHHHhcCC-----C-ccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCC---CCCCceEEEecc
Q 010274 217 RNVLDVGCGVASFGAYLLSHD-----I-IAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY---PSRSFELAHCSR 287 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~-----V-~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~---~~~sFDlV~~s~ 287 (514)
-+++|+-||.|.++..+..+. + .++|+++.. .+..+.+.... +...|+..+.. +...+|+++.+.
T Consensus 11 ~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a-----~~ty~~N~~~~-~~~~DI~~~~~~~i~~~~~Dil~ggp 84 (327)
T 3qv2_A 11 VNVIEFFSGIGGLRSSYERSSININATFIPFDINEIA-----NKIYSKNFKEE-VQVKNLDSISIKQIESLNCNTWFMSP 84 (327)
T ss_dssp EEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHH-----HHHHHHHHCCC-CBCCCTTTCCHHHHHHTCCCEEEECC
T ss_pred CEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHH-----HHHHHHHCCCC-cccCChhhcCHHHhccCCCCEEEecC
Confidence 479999999999888887543 2 466665433 23333332222 44566666542 223689998642
Q ss_pred ccccc----------ccch-HHHHHHHHh-hC-----CCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 288 CRIDW----------LQRD-GILLLELDR-LL-----RPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 288 ~~l~~----------~~d~-~~lL~el~R-vL-----rPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
---.+ ..|. ..++.++.| ++ +|. ++++.--.... ....++.+.+.++++||.+....
T Consensus 85 PCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~-~~~lENV~gl~----~~~~~~~i~~~l~~~GY~v~~~v 158 (327)
T 3qv2_A 85 PCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPK-HIFIENVPLFK----ESLVFKEIYNILIKNQYYIKDII 158 (327)
T ss_dssp CCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCS-EEEEEECGGGG----GSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCC-EEEEEchhhhc----ChHHHHHHHHHHHhCCCEEEEEE
Confidence 11111 1233 346777777 54 464 33332211111 12357788899999999875443
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=81.81 E-value=1 Score=45.21 Aligned_cols=85 Identities=16% Similarity=0.113 Sum_probs=53.9
Q ss_pred CCeEEEECCCC-chHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGV-ASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+||-+|+|. |.++..++. ..|++++.+ +...+.+++.|....+ .+...+ . ..+|+|+-... -
T Consensus 177 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~-----~~~~~~~~~lGa~~v~--~~~~~~--~-~~~D~vid~~g-~- 244 (348)
T 3two_A 177 GTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARN-----EHKKQDALSMGVKHFY--TDPKQC--K-EELDFIISTIP-T- 244 (348)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHTTCEEEEECSS-----STTHHHHHHTTCSEEE--SSGGGC--C-SCEEEEEECCC-S-
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCC-----HHHHHHHHhcCCCeec--CCHHHH--h-cCCCEEEECCC-c-
Confidence 46899999864 666666663 345555444 3344677777765544 232222 2 27999985432 1
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
...+....++|+|||++++..
T Consensus 245 -----~~~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 245 -----HYDLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp -----CCCHHHHHTTEEEEEEEEECC
T ss_pred -----HHHHHHHHHHHhcCCEEEEEC
Confidence 125778889999999999865
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=81.54 E-value=8.1 Score=39.41 Aligned_cols=97 Identities=10% Similarity=-0.006 Sum_probs=57.9
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeE-EEeecCCCCCCCCCCceEEEecccccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~-~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d 295 (514)
.+||.|+.+.|.++..|+...++.++=+-. ...+..+.....+.... +...+..+ -....||+|+.. +-.....
T Consensus 40 ~~~~~~~d~~gal~~~~~~~~~~~~~ds~~-~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~--lpk~~~~ 114 (375)
T 4dcm_A 40 GPVLILNDAFGALSCALAEHKPYSIGDSYI-SELATRENLRLNGIDESSVKFLDSTA--DYPQQPGVVLIK--VPKTLAL 114 (375)
T ss_dssp SCEEEECCSSSHHHHHTGGGCCEEEESCHH-HHHHHHHHHHHTTCCGGGSEEEETTS--CCCSSCSEEEEE--CCSCHHH
T ss_pred CCEEEECCCCCHHHHhhccCCceEEEhHHH-HHHHHHHHHHHcCCCccceEeccccc--ccccCCCEEEEE--cCCCHHH
Confidence 469999999999999998766665532221 22233333344454321 11222222 123579998832 1222333
Q ss_pred hHHHHHHHHhhCCCCeEEEEEeC
Q 010274 296 DGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 296 ~~~lL~el~RvLrPGG~lvis~P 318 (514)
....|..+...|+||+.+++...
T Consensus 115 l~~~L~~l~~~l~~~~~i~~~g~ 137 (375)
T 4dcm_A 115 LEQQLRALRKVVTSDTRIIAGAK 137 (375)
T ss_dssp HHHHHHHHHTTCCTTSEEEEEEE
T ss_pred HHHHHHHHHhhCCCCCEEEEEec
Confidence 35578899999999999987653
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=81.43 E-value=1.7 Score=44.54 Aligned_cols=94 Identities=13% Similarity=0.040 Sum_probs=55.8
Q ss_pred CCeEEEECCCC-chHHHHHhc---C-CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCC-C------CCCCCceEE
Q 010274 216 IRNVLDVGCGV-ASFGAYLLS---H-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-P------YPSRSFELA 283 (514)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La~---~-~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~l-p------~~~~sFDlV 283 (514)
..+||-+|+|. |.++..++. . .|++++ .++...+.+++.|.. .+.....+. . .....||+|
T Consensus 186 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~-----~~~~~~~~a~~lGa~--~i~~~~~~~~~~~~~~~~~g~g~Dvv 258 (398)
T 2dph_A 186 GSHVYIAGAGPVGRCAAAGARLLGAACVIVGD-----QNPERLKLLSDAGFE--TIDLRNSAPLRDQIDQILGKPEVDCG 258 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEE-----SCHHHHHHHHTTTCE--EEETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEc-----CCHHHHHHHHHcCCc--EEcCCCcchHHHHHHHHhCCCCCCEE
Confidence 46899999875 777777764 3 455554 445556777776652 222111111 0 012369999
Q ss_pred Eecccccccc--------cchHHHHHHHHhhCCCCeEEEEEe
Q 010274 284 HCSRCRIDWL--------QRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 284 ~~s~~~l~~~--------~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+-... -... .+....+.++.++|++||++++..
T Consensus 259 id~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 259 VDAVG-FEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp EECSC-TTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred EECCC-CccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence 85432 1110 012347889999999999998754
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=80.96 E-value=1.8 Score=41.74 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=25.5
Q ss_pred CeEEEECCCCchHHHHHh--cCCCccccCChhhh
Q 010274 217 RNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDV 248 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La--~~~V~gvdis~~di 248 (514)
..|||..||+|+.+.... ++.++++|+++..+
T Consensus 214 ~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~ 247 (260)
T 1g60_A 214 DLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYV 247 (260)
T ss_dssp CEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHH
T ss_pred CEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHH
Confidence 589999999999887766 56788888776544
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=80.92 E-value=1.3 Score=45.23 Aligned_cols=95 Identities=16% Similarity=0.079 Sum_probs=57.2
Q ss_pred CCeEEEECCCC-chHHHHHhc---C-CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC-CC------CCCCCceEE
Q 010274 216 IRNVLDVGCGV-ASFGAYLLS---H-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LP------YPSRSFELA 283 (514)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La~---~-~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~-lp------~~~~sFDlV 283 (514)
..+||-+|+|. |.++..++. . .|+++ +.++..++.+++.|.. .+...... +. .....+|+|
T Consensus 186 g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~-----~~~~~~~~~a~~lGa~--~i~~~~~~~~~~~v~~~t~g~g~Dvv 258 (398)
T 1kol_A 186 GSTVYVAGAGPVGLAAAASARLLGAAVVIVG-----DLNPARLAHAKAQGFE--IADLSLDTPLHEQIAALLGEPEVDCA 258 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEE-----ESCHHHHHHHHHTTCE--EEETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCeEEEE-----cCCHHHHHHHHHcCCc--EEccCCcchHHHHHHHHhCCCCCCEE
Confidence 46899999864 677777764 2 24444 4456666788877763 22111111 00 112469999
Q ss_pred Eeccccc--------ccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 284 HCSRCRI--------DWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 284 ~~s~~~l--------~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+-....- .+.+++...+.+..++|++||++++..
T Consensus 259 id~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 259 VDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp EECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 8543211 122344557899999999999998754
|
| >2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.83 E-value=1.7 Score=38.41 Aligned_cols=72 Identities=15% Similarity=0.142 Sum_probs=44.2
Q ss_pred CCCCCCCceEEEeccccc-ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 273 LPYPSRSFELAHCSRCRI-DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 273 lp~~~~sFDlV~~s~~~l-~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
..+++++||.|+-....- .+..-+..++..+.+.|||||.|.. ... ....-+--+||.+....
T Consensus 53 VsLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g--------l~~------~~~~EailaGfvv~~~~-- 116 (136)
T 2km1_A 53 ITLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG--------LSD------IYKVDALINGFEIINEP-- 116 (136)
T ss_dssp CCCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC--------CCH------HHHHHHHHHTEEEECSS--
T ss_pred ccCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe--------cCc------chhhHHHhhccEeccCC--
Confidence 346788999999543211 2222337899999999999999985 111 11222334688876521
Q ss_pred eEEEeccCc
Q 010274 352 TVIWAKPIS 360 (514)
Q Consensus 352 ~~iw~Kp~~ 360 (514)
...|.||..
T Consensus 117 ~~~~~KP~~ 125 (136)
T 2km1_A 117 DYCWIKMDS 125 (136)
T ss_dssp SCEEEEC--
T ss_pred CceeeccCc
Confidence 227999964
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 514 | ||||
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 6e-07 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 4e-04 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 4e-04 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 0.002 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.002 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.003 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 0.003 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 0.004 |
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 48.6 bits (114), Expect = 6e-07
Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 2/146 (1%)
Query: 209 KLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVL 268
K + +R VLD+ CG L + L ++ + + +
Sbjct: 35 KEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQ 94
Query: 269 GTKRLPYPSRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFVYSSPEAYAHDPE 326
G F+ I + + + L ++ L+PGG F+ P + +
Sbjct: 95 GDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRD 154
Query: 327 NRRIWNAMYDLLKSMCWKIVSKKDQT 352
+WN K + +
Sbjct: 155 GPVVWNEQKGEEKLVIMDWREVEPAV 180
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 39.8 bits (91), Expect = 4e-04
Identities = 26/154 (16%), Positives = 55/154 (35%), Gaps = 9/154 (5%)
Query: 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQI 253
K+ L + F + L N VLD+G G + +L + + P+
Sbjct: 24 KWKLYHRLIGSFLEEYLKNPCR---VLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVA 80
Query: 254 QFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF 313
+ + + + LP+PS +FE + +++ E+ R+L P G
Sbjct: 81 REKGVKNVVEA----KAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLL 136
Query: 314 VYSSP--EAYAHDPENRRIWNAMYDLLKSMCWKI 345
+ + + + W+ + LK+ +
Sbjct: 137 IATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSV 170
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 39.6 bits (91), Expect = 4e-04
Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 5/120 (4%)
Query: 219 VLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY 275
+LD+G G + ++ + + + +
Sbjct: 37 ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV 96
Query: 276 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMY 335
+ ++A C G L + L+PGG + P + P I A
Sbjct: 97 ANEKCDVAACVGATWIAGGFAGA-EELLAQSLKPGGIMLIGEP-YWRQLPATEEIAQACG 154
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 37.4 bits (86), Expect = 0.002
Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 4/101 (3%)
Query: 219 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYP 276
+L +G + +++ + A + ++ L+ + + +LG P
Sbjct: 78 ILYLGASAGTTPSHVADIADKGIVYA-IEYAPRIMRELLDACAERENIIPILGDANKPQE 136
Query: 277 SR-SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316
E + + IL+ L+ GGY + +
Sbjct: 137 YANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA 177
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 37.3 bits (85), Expect = 0.002
Identities = 19/148 (12%), Positives = 41/148 (27%), Gaps = 3/148 (2%)
Query: 211 NNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT 270
N + LD+ CG + L ++ + ++ +
Sbjct: 33 ENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQD 92
Query: 271 KRLPYPSRSFELAHCSRCRIDWLQRDGIL---LLELDRLLRPGGYFVYSSPEAYAHDPEN 327
+R F+L C +++ L + L+ GG F++ Y
Sbjct: 93 ISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVL 152
Query: 328 RRIWNAMYDLLKSMCWKIVSKKDQTVIW 355
D W+ + D ++
Sbjct: 153 GNNDFNYDDDEVFYYWENQFEDDLVSMY 180
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 37.6 bits (86), Expect = 0.003
Identities = 16/126 (12%), Positives = 37/126 (29%), Gaps = 2/126 (1%)
Query: 202 MLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI 261
+ F + + +++D GCG G L+ D E + A E
Sbjct: 14 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFR 73
Query: 262 PSTLGVLGTKRLPYPSRSFELAHCSRCR--IDWLQRDGILLLELDRLLRPGGYFVYSSPE 319
+ + + C + + +L ++ ++ GG + P
Sbjct: 74 LLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 133
Query: 320 AYAHDP 325
++
Sbjct: 134 WISNMA 139
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 37.3 bits (86), Expect = 0.003
Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 1/102 (0%)
Query: 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP 276
++L+VG G + +Y+L +L + E+ ++ A++
Sbjct: 87 MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI 146
Query: 277 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318
+ D + ++ +++PG + P
Sbjct: 147 ADFISDQMYDAVIADIPDPWNH-VQKIASMMKPGSVATFYLP 187
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 36.5 bits (83), Expect = 0.004
Identities = 22/154 (14%), Positives = 47/154 (30%), Gaps = 9/154 (5%)
Query: 199 LARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFA 256
LA++++ + K N VLDV G ++A L + + +
Sbjct: 4 LAKLMQIAALKGN-----EEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIE 58
Query: 257 LERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316
+++P+ F + C + + E R+L+ GG +
Sbjct: 59 GNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASF-VSEAYRVLKKGGQLLLV 117
Query: 317 SPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350
+ + +N + + K D
Sbjct: 118 DN-SAPENDAFDVFYNYVEKERDYSHHRAWKKSD 150
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 514 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.75 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.7 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.67 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.65 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.63 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.63 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.63 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.63 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.6 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.57 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.55 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.54 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.49 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.49 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.47 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.43 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.43 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.42 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.4 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.39 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.38 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.38 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.37 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.37 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.36 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.35 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.33 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.32 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.29 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.29 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.27 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.27 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.24 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.22 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.2 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.2 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.17 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.16 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.12 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.07 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.03 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.02 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.98 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.95 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.94 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.94 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.93 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.89 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.79 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.76 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.69 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.68 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.62 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.55 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.53 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.44 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.41 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.4 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.4 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.33 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.3 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.28 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.25 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.19 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.17 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.15 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.12 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.09 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.04 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.95 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 97.85 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.84 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.81 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.78 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.71 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.67 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.49 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.47 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.47 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.45 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.45 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.23 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.21 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.2 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.19 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.18 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.05 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.05 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.02 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.82 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 96.73 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.72 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.52 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.02 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 95.85 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 95.7 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 95.38 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 95.18 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 95.14 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 94.28 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 93.98 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.36 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 91.92 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 90.0 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 89.66 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 89.38 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 89.07 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 86.33 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 83.73 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 82.65 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 81.53 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.75 E-value=4.4e-18 Score=161.47 Aligned_cols=133 Identities=14% Similarity=0.214 Sum_probs=101.0
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..+|||||||+|.++..|++ .+|+|+|+++.++..+..........++.+.++|...+|+++++||+|+|.. +++|+
T Consensus 16 ~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~-~l~~~ 94 (231)
T d1vl5a_ 16 NEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRI-AAHHF 94 (231)
T ss_dssp CCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEES-CGGGC
T ss_pred cCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccccccccccccccccccccccccccccccccc-ccccc
Confidence 36899999999999999985 4678888887777666533333334568899999999999999999999988 69999
Q ss_pred cchHHHHHHHHhhCCCCeEEEEEeCCCCCCCh-hHH-H--------------hHHHHHHHHHhcCcEEEEEe
Q 010274 294 QRDGILLLELDRLLRPGGYFVYSSPEAYAHDP-ENR-R--------------IWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~-e~~-~--------------~~~~l~~ll~~~Gf~~v~~~ 349 (514)
+++..+|.++.|+|||||++++.++....... ... . .-.++.++++++||++++.+
T Consensus 95 ~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 166 (231)
T d1vl5a_ 95 PNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELH 166 (231)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEE
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 99999999999999999999987643211100 000 0 01467889999999887544
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.70 E-value=8.1e-17 Score=153.90 Aligned_cols=142 Identities=18% Similarity=0.256 Sum_probs=105.4
Q ss_pred HHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCC
Q 010274 196 ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKR 272 (514)
Q Consensus 196 ~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~ 272 (514)
.+.+.+.+... ...+|||||||+|.++..|++ .+|+|+|+++.++..++ +.+...+ .++.+.++|++.
T Consensus 5 ~~~l~~~~~~~--------~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~-~~~~~~~~~~~~~~~~d~~~ 75 (234)
T d1xxla_ 5 LGLMIKTAECR--------AEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVAS-SFAQEKGVENVRFQQGTAES 75 (234)
T ss_dssp HHHHHHHHTCC--------TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHH-HHHHHHTCCSEEEEECBTTB
T ss_pred HHHHHHHhCCC--------CCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhh-hhhccccccccccccccccc
Confidence 34455666543 336899999999999999986 36778887777766655 3344444 468899999999
Q ss_pred CCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHH-----------------hHHHHH
Q 010274 273 LPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRR-----------------IWNAMY 335 (514)
Q Consensus 273 lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~-----------------~~~~l~ 335 (514)
+|+++++||+|+|.. +++|++++..+|+++.|+|||||++++++.... ..+.... ...++.
T Consensus 76 ~~~~~~~fD~v~~~~-~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (234)
T d1xxla_ 76 LPFPDDSFDIITCRY-AAHHFSDVRKAVREVARVLKQDGRFLLVDHYAP-EDPVLDEFVNHLNRLRDPSHVRESSLSEWQ 153 (234)
T ss_dssp CCSCTTCEEEEEEES-CGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBC-SSHHHHHHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred ccccccccceeeeec-eeecccCHHHHHHHHHHeeCCCcEEEEEEcCCC-CCHHHHHHHHHHHhhCCCcccccCCHHHHH
Confidence 999999999999988 689999999999999999999999998653211 1111000 013577
Q ss_pred HHHHhcCcEEEEE
Q 010274 336 DLLKSMCWKIVSK 348 (514)
Q Consensus 336 ~ll~~~Gf~~v~~ 348 (514)
.+++..||.+...
T Consensus 154 ~~~~~~gf~~~~~ 166 (234)
T d1xxla_ 154 AMFSANQLAYQDI 166 (234)
T ss_dssp HHHHHTTEEEEEE
T ss_pred HHHHHCCCceeEE
Confidence 8889999977653
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.67 E-value=1.7e-16 Score=156.00 Aligned_cols=135 Identities=16% Similarity=0.223 Sum_probs=102.1
Q ss_pred CCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
+..+|||||||+|.++..|++ ..|+|+|+++.++..+. +.+...++ ++.+..+|..++|+++++||+|+|.. +
T Consensus 67 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~-~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~-~ 144 (282)
T d2o57a1 67 RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNE-EYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD-A 144 (282)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES-C
T ss_pred CCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhh-cccccccccccccccccccccccccccccchhhccc-h
Confidence 346899999999999999984 46788888777765555 33334444 58899999999999999999999887 6
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCCCCC-CChhHH-H-----------hHHHHHHHHHhcCcEEEEEecc
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-HDPENR-R-----------IWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~-~~~e~~-~-----------~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
++|++++..+|+++.|+|||||+|+++++.... ...... . ....+.++++++||..+...+.
T Consensus 145 l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 145 FLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred hhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEEEC
Confidence 888999999999999999999999997652111 011110 0 1246678999999988765543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=2.8e-16 Score=146.94 Aligned_cols=124 Identities=18% Similarity=0.226 Sum_probs=97.2
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccccch
Q 010274 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 296 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~ 296 (514)
.+|||||||+|.++..+.. ++|+|+++ .+++.|+++ ++.+.+++.+.+++++++||+|+|.. +++|++++
T Consensus 38 ~~vLDiGcG~G~~~~~~~~--~~giD~s~-----~~~~~a~~~--~~~~~~~d~~~l~~~~~~fD~I~~~~-~l~h~~d~ 107 (208)
T d1vlma_ 38 GRGVEIGVGTGRFAVPLKI--KIGVEPSE-----RMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVT-TICFVDDP 107 (208)
T ss_dssp SCEEEETCTTSTTHHHHTC--CEEEESCH-----HHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEES-CGGGSSCH
T ss_pred CeEEEECCCCcccccccce--EEEEeCCh-----hhccccccc--cccccccccccccccccccccccccc-cccccccc
Confidence 3699999999999988854 57776654 555677776 46788899999999999999999988 79999999
Q ss_pred HHHHHHHHhhCCCCeEEEEEeCCCCCCChhH-------------H--HhHHHHHHHHHhcCcEEEEEec
Q 010274 297 GILLLELDRLLRPGGYFVYSSPEAYAHDPEN-------------R--RIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 297 ~~lL~el~RvLrPGG~lvis~P~~~~~~~e~-------------~--~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
..+|+++.|+|||||.+++.+|......... . ..-+++.++++++||+.++...
T Consensus 108 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 108 ERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred ccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 9999999999999999999887542110000 0 0124789999999998876543
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.63 E-value=5.3e-16 Score=145.54 Aligned_cols=101 Identities=20% Similarity=0.434 Sum_probs=84.0
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
.+|||||||+|.++..|++ ..|+|+|+++.++..+. +.+...+..+.+...|+..+++++++||+|+|.. +++|++
T Consensus 39 ~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak-~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~-~l~~~~ 116 (226)
T d1ve3a1 39 GKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAR-EYAKSRESNVEFIVGDARKLSFEDKTFDYVIFID-SIVHFE 116 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEES-CGGGCC
T ss_pred CEEEEECCCcchhhhhHhhhhcccccccccccchhhhh-hhhccccccccccccccccccccCcCceEEEEec-chhhCC
Confidence 5899999999999999986 46788888777776665 4444556778888899999999999999999988 688875
Q ss_pred --chHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 295 --RDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 295 --d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
+...+|+++.++|||||+|++..+.
T Consensus 117 ~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 117 PLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 5567999999999999999987653
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.7e-16 Score=149.33 Aligned_cols=137 Identities=16% Similarity=0.187 Sum_probs=99.6
Q ss_pred CCCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 214 GNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
....+|||||||+|.++..|+. ..|+++|+++.++..+...........+.+.++|+..+++++++||+|+|.. ++
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~-~l 137 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW-VI 137 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEES-CG
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccc-cc
Confidence 3456899999999999998763 2467777766666554422222222346889999999999889999999988 68
Q ss_pred ccccch--HHHHHHHHhhCCCCeEEEEEeCCCCC------CChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 291 DWLQRD--GILLLELDRLLRPGGYFVYSSPEAYA------HDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 291 ~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~------~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
+|++++ ..+|.++.++|||||.++++++.... .........+++.++++++||+++..+.+
T Consensus 138 ~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q 206 (222)
T d2ex4a1 138 GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ 206 (222)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEEe
Confidence 888765 46999999999999999997642211 01111113467899999999999887654
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=6.7e-16 Score=148.56 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC--CeEEE
Q 010274 192 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI--PSTLG 266 (514)
Q Consensus 192 a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~ 266 (514)
....++.+.+.+.+. .+.+|||||||+|.++..|++ ..|+|+|+++.++..+. +.+...+. .+.+.
T Consensus 18 ~~~~~~~l~~~~~l~--------pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar-~~~~~~gl~~~v~~~ 88 (245)
T d1nkva_ 18 TEEKYATLGRVLRMK--------PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAK-RRAEELGVSERVHFI 88 (245)
T ss_dssp CHHHHHHHHHHTCCC--------TTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEE
T ss_pred CHHHHHHHHHHcCCC--------CCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHH-HHHHHhhccccchhh
Confidence 345566677777653 236899999999999999874 35778877776665554 34445554 47899
Q ss_pred eecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCC--Chh-----------HHHhHHH
Q 010274 267 VLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH--DPE-----------NRRIWNA 333 (514)
Q Consensus 267 ~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~--~~e-----------~~~~~~~ 333 (514)
++|...+ +++++||+|+|.. +++|+.+...+++++.|+|||||++++..+..... ..+ .......
T Consensus 89 ~~d~~~~-~~~~~fD~v~~~~-~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (245)
T d1nkva_ 89 HNDAAGY-VANEKCDVAACVG-ATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPG 166 (245)
T ss_dssp ESCCTTC-CCSSCEEEEEEES-CGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHH
T ss_pred hhHHhhc-cccCceeEEEEEe-hhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHH
Confidence 9998887 4678999999988 58889999999999999999999999987521110 011 0112346
Q ss_pred HHHHHHhcCcEEEE
Q 010274 334 MYDLLKSMCWKIVS 347 (514)
Q Consensus 334 l~~ll~~~Gf~~v~ 347 (514)
+...++++||.++.
T Consensus 167 ~~~~~~~aG~~~v~ 180 (245)
T d1nkva_ 167 LVGAFDDLGYDVVE 180 (245)
T ss_dssp HHHHHHTTTBCCCE
T ss_pred HHHHHHHcCCEEEE
Confidence 78889999997653
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=3.3e-16 Score=148.86 Aligned_cols=101 Identities=21% Similarity=0.390 Sum_probs=83.4
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d 295 (514)
..+|||||||+|.++..|++. +.++.+.|+++.+++.|++++... +..++++++++++++||+|+|...++||+++
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~-~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d 118 (246)
T d2avna1 43 PCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 118 (246)
T ss_dssp CCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCEEEEECCCCchhccccccc---ceEEEEeecccccccccccccccc-cccccccccccccccccceeeecchhhhhhh
Confidence 358999999999999999964 223444455566778888876543 5678899999999999999987668999999
Q ss_pred hHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 296 DGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 296 ~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
+..+|+++.|+|||||.++++.|..
T Consensus 119 ~~~~l~~i~r~Lk~gG~~ii~~~~~ 143 (246)
T d2avna1 119 KDKAFSEIRRVLVPDGLLIATVDNF 143 (246)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred HHHHHHHHHhhcCcCcEEEEEECCH
Confidence 9999999999999999999988653
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.60 E-value=1.5e-15 Score=144.53 Aligned_cols=135 Identities=19% Similarity=0.206 Sum_probs=100.9
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
.+|||||||+|.++..|++. .|+|+|+ ++.+++.|+++. .++.+..++.+.+++ +++||+|+|.. +++|+
T Consensus 22 ~~VLDiGcG~G~~~~~l~~~g~~v~giD~-----s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~-vleh~ 94 (225)
T d2p7ia1 22 GNLLELGSFKGDFTSRLQEHFNDITCVEA-----SEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTH-VLEHI 94 (225)
T ss_dssp SCEEEESCTTSHHHHHHTTTCSCEEEEES-----CHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEES-CGGGC
T ss_pred CcEEEEeCCCcHHHHHHHHcCCeEEEEeC-----cHHHhhhhhccccccccccccccccccc-ccccccccccc-eeEec
Confidence 57999999999999999864 5666655 555667776663 357788888888776 47999999887 79999
Q ss_pred cchHHHHHHHH-hhCCCCeEEEEEeCCCCCC-----------------ChhHH-------HhHHHHHHHHHhcCcEEEEE
Q 010274 294 QRDGILLLELD-RLLRPGGYFVYSSPEAYAH-----------------DPENR-------RIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 294 ~d~~~lL~el~-RvLrPGG~lvis~P~~~~~-----------------~~e~~-------~~~~~l~~ll~~~Gf~~v~~ 348 (514)
+++..+|.++. ++|||||.++++.|+.... ..... -.+++++++++++||+++..
T Consensus 95 ~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~ 174 (225)
T d2p7ia1 95 DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYR 174 (225)
T ss_dssp SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEE
Confidence 99999999998 8999999999998753210 00000 02468999999999998875
Q ss_pred ecceEEEeccCcc
Q 010274 349 KDQTVIWAKPISN 361 (514)
Q Consensus 349 ~~~~~iw~Kp~~~ 361 (514)
+. +.-||..+
T Consensus 175 ~~---~~~kp~~~ 184 (225)
T d2p7ia1 175 SG---IFFKALAN 184 (225)
T ss_dssp EE---EEECCSCH
T ss_pred EE---EEeccccH
Confidence 53 34466554
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.57 E-value=2.1e-15 Score=148.69 Aligned_cols=117 Identities=15% Similarity=0.232 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEe
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGV 267 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~ 267 (514)
+.|.+.+.+.+.. ..++.+|||||||+|.++..|+. ..|+|+|+++.++..+. +.+...+.++.+.+
T Consensus 12 ~d~l~~l~~~~~~-------~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~-~~~~~~~~~~~f~~ 83 (281)
T d2gh1a1 12 DDYVSFLVNTVWK-------ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAR-ELFRLLPYDSEFLE 83 (281)
T ss_dssp HHHHHHHHHTTSC-------CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHH-HHHHSSSSEEEEEE
T ss_pred HHHHHHHHHHHhc-------cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhh-cccccccccccccc
Confidence 4455555544321 23457899999999999999884 34778877776665554 33344456788999
Q ss_pred ecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 268 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 268 ~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
.|+..++++ ++||+|+|.. +++|++++..+|+++.++|||||.+++.+|.
T Consensus 84 ~d~~~~~~~-~~fD~v~~~~-~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 84 GDATEIELN-DKYDIAICHA-FLLHMTTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp SCTTTCCCS-SCEEEEEEES-CGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ccccccccc-CCceEEEEeh-hhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 999999886 5799999988 6899999999999999999999999998874
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.55 E-value=6.5e-15 Score=140.94 Aligned_cols=103 Identities=19% Similarity=0.320 Sum_probs=83.7
Q ss_pred CCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
+.++|||||||+|.++..|++ .+|+|+|+++.++..+. +.+.+.+.++.+.++|+..++++ ++||+|+|...+++|
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~-~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~ 118 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVAR-RKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred CCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccc-cccccccccchheehhhhhcccc-cccchHhhhhhhhhc
Confidence 346899999999999999985 46788888777776555 33445577899999999999987 589999998767777
Q ss_pred c--cchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 293 L--QRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 293 ~--~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
. ++...+|++++++|||||+|++..+.
T Consensus 119 ~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 119 FDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 6 34567999999999999999997754
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.54 E-value=2.3e-15 Score=146.51 Aligned_cols=131 Identities=15% Similarity=0.156 Sum_probs=96.1
Q ss_pred CCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcC---CCeEEEeecCCCCCCCCCCceEEEeccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg---~~~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
...+|||+|||+|.++..|+. ..|+++|+++.++ +.|+++. ..+.+.+.+++.+++++++||+|+|..
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l-----~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~- 166 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHML-----EEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQW- 166 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHH-----HHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEES-
T ss_pred CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHH-----HhhhccccccccceeEEccccccccCCCccceEEeec-
Confidence 446899999999999998773 3466776655544 5555442 235788899999999889999999988
Q ss_pred ccccccch--HHHHHHHHhhCCCCeEEEEEeCCCCC----CC---hhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYA----HD---PENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 289 ~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~----~~---~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
+++|++++ ..+|+++.++|||||++++..+.... .+ .......+.++++++++||++++.+.+
T Consensus 167 vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~q 238 (254)
T d1xtpa_ 167 TAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQ 238 (254)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred cccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEee
Confidence 58888775 47899999999999999997642211 00 001112457889999999999876543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=2.4e-14 Score=140.13 Aligned_cols=97 Identities=25% Similarity=0.352 Sum_probs=77.6
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
+..+|||||||+|.++..|++.. ....+.+.|+++.+++.|+++..++.+.++|+.++|+++++||+|++.. .+++
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~-~~~~-- 159 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIY-APCK-- 159 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEES-CCCC--
T ss_pred CCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecC-CHHH--
Confidence 34689999999999999998641 1122333355566678888888889999999999999999999999877 3443
Q ss_pred chHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 295 RDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 295 d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
+.|+.|+|||||+|++++|..
T Consensus 160 -----~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 160 -----AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp -----HHHHHHHEEEEEEEEEEEECT
T ss_pred -----HHHHHHHhCCCcEEEEEeeCC
Confidence 578999999999999999865
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.49 E-value=4.2e-14 Score=135.55 Aligned_cols=102 Identities=19% Similarity=0.358 Sum_probs=80.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
.+++|||||||+|.++..|++. +|+|+|+++.++..+. +.+...+.++.+.++|+..++++ ++||+|+|....++|
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~i~~~~~~~~~ 114 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAE-NKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHH-HHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGG
T ss_pred CCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhcc-ccccccCccceeeccchhhhccc-ccccccceeeeeeec
Confidence 3468999999999999999864 5777877776666554 33445577899999999888865 689999987656776
Q ss_pred cc---chHHHHHHHHhhCCCCeEEEEEeC
Q 010274 293 LQ---RDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 293 ~~---d~~~lL~el~RvLrPGG~lvis~P 318 (514)
+. +...+|++++++|||||.|++..+
T Consensus 115 ~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 64 445699999999999999998653
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.47 E-value=1.5e-13 Score=130.06 Aligned_cols=100 Identities=18% Similarity=0.185 Sum_probs=69.9
Q ss_pred CCeEEEECCCCchHHHHHhc------CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS------HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~------~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~ 287 (514)
..+|||||||+|..+..|++ .+|+|+|+++.++..+....+ +.+. ...+...|... ++...||+|+|+.
T Consensus 40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~-~~~~~~~~~~~~~d~~~--~~~~~~d~i~~~~ 116 (225)
T d1im8a_ 40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIA-AYHSEIPVEILCNDIRH--VEIKNASMVILNF 116 (225)
T ss_dssp TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHH-TSCCSSCEEEECSCTTT--CCCCSEEEEEEES
T ss_pred CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhH-hhcccchhhhccchhhc--cccccceeeEEee
Confidence 35899999999999988874 245666666555544432222 2233 34445555444 4456899999887
Q ss_pred cccccc--cchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 288 CRIDWL--QRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 288 ~~l~~~--~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
++||. ++...+|++++|+|||||.|++.++.
T Consensus 117 -~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 117 -TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 149 (225)
T ss_dssp -CGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -eccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence 57776 45678999999999999999998653
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.43 E-value=1.6e-13 Score=127.48 Aligned_cols=98 Identities=19% Similarity=0.400 Sum_probs=78.2
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
.+|||||||+|..+..|++. .|+++|+++.++..+... +.+.+. .+.+...|...+++ +++||+|+|.. +++|+
T Consensus 32 grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~-~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~-~~~~~ 108 (198)
T d2i6ga1 32 GRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERI-KAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTV-VMMFL 108 (198)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCTTEEEEECCTTTCCC-CCCEEEEEEES-CGGGS
T ss_pred CcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHH-hhhccccchhhhheecccccc-cccccEEEEee-eeecC
Confidence 48999999999999999964 677888887777666533 344454 46788888888876 57999999888 57887
Q ss_pred cch--HHHHHHHHhhCCCCeEEEEEe
Q 010274 294 QRD--GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 294 ~d~--~~lL~el~RvLrPGG~lvis~ 317 (514)
++. ..+++++.++|+|||++++..
T Consensus 109 ~~~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 109 EAQTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp CTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 654 569999999999999999865
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.43 E-value=3.9e-13 Score=133.30 Aligned_cols=132 Identities=13% Similarity=0.169 Sum_probs=89.3
Q ss_pred CCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCC--eEEEeecCCCCCCCCCCceEEEecccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~--~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
.+.+|||||||.|.++.++++ ..|+|++++...+..+. +.+++.+.. +.+...| .++.+++||.|+|.. .
T Consensus 61 ~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~-~~~~~~~l~~~v~~~~~d---~~~~~~~fD~i~sie-~ 135 (291)
T d1kpia_ 61 PGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDK-AMFDEVDSPRRKEVRIQG---WEEFDEPVDRIVSLG-A 135 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHSCCSSCEEEEECC---GGGCCCCCSEEEEES-C
T ss_pred CCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHH-HHHHhhccchhhhhhhhc---ccccccccceEeech-h
Confidence 346899999999999999884 56777777766555444 334444543 3444443 345568999999877 6
Q ss_pred cccccc---------hHHHHHHHHhhCCCCeEEEEEeC---CCCC------CChhHH-----------------HhHHHH
Q 010274 290 IDWLQR---------DGILLLELDRLLRPGGYFVYSSP---EAYA------HDPENR-----------------RIWNAM 334 (514)
Q Consensus 290 l~~~~d---------~~~lL~el~RvLrPGG~lvis~P---~~~~------~~~e~~-----------------~~~~~l 334 (514)
++|+.+ ...+++++.++|||||++++.+- .... ..+... ....++
T Consensus 136 ~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~lps~~~~ 215 (291)
T d1kpia_ 136 FEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQV 215 (291)
T ss_dssp GGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHH
T ss_pred HHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCCCCCHHHH
Confidence 888765 36899999999999999997542 1100 000000 012467
Q ss_pred HHHHHhcCcEEEEEecc
Q 010274 335 YDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 335 ~~ll~~~Gf~~v~~~~~ 351 (514)
...++++||++...++.
T Consensus 216 ~~~~e~~gl~v~~~~~~ 232 (291)
T d1kpia_ 216 DYYSSNAGWKVERYHRI 232 (291)
T ss_dssp HHHHHHHTCEEEEEEEC
T ss_pred Hhhhcccccccceeeec
Confidence 78889999998877654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.42 E-value=1.7e-13 Score=133.40 Aligned_cols=121 Identities=13% Similarity=0.154 Sum_probs=92.8
Q ss_pred CCeEEEECCCCchHHHHHh--cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La--~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
+.+|||+|||+|.++..++ +..|+++|+++.++..+. +.++..+.+..+.+++... .+++++||+|+++. ..+
T Consensus 121 g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~-~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani-~~~-- 195 (254)
T d2nxca1 121 GDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAE-ANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANL-YAE-- 195 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHH-HHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEEC-CHH--
T ss_pred cCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHH-HHHHHcCCceeEEeccccc-cccccccchhhhcc-ccc--
Confidence 4689999999999998887 357899999999887776 5566678888888877554 34567999999764 222
Q ss_pred cchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 294 QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
....++.++.++|||||+|++++.-. ..-+.+.+.+++.||++++...
T Consensus 196 -~l~~l~~~~~~~LkpGG~lilSgil~--------~~~~~v~~~~~~~Gf~~~~~~~ 243 (254)
T d2nxca1 196 -LHAALAPRYREALVPGGRALLTGILK--------DRAPLVREAMAGAGFRPLEEAA 243 (254)
T ss_dssp -HHHHHHHHHHHHEEEEEEEEEEEEEG--------GGHHHHHHHHHHTTCEEEEEEE
T ss_pred -cHHHHHHHHHHhcCCCcEEEEEecch--------hhHHHHHHHHHHCCCEEEEEEE
Confidence 24568899999999999999975311 1235778889999999877544
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=2.5e-13 Score=132.71 Aligned_cols=131 Identities=11% Similarity=0.050 Sum_probs=82.9
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhhhhHHHHHHHHHc-----CC-CeE--EEeecCC------CCCCC
Q 010274 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-----GI-PST--LGVLGTK------RLPYP 276 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-----~V~gvdis~~dis~a~~~~A~~r-----g~-~~~--~~~~d~~------~lp~~ 276 (514)
..+|||||||+|.++..|+.. .-..+.+.+.|+++.+++.++++ .. .+. +...+.+ ..+++
T Consensus 41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (280)
T d1jqea_ 41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE 120 (280)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence 347999999999998877631 11122233334555555555543 11 222 2232222 23567
Q ss_pred CCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhH-------------H--HhHHHHHHHHHhc
Q 010274 277 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN-------------R--RIWNAMYDLLKSM 341 (514)
Q Consensus 277 ~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~-------------~--~~~~~l~~ll~~~ 341 (514)
+++||+|+|.+ +++|++++..+|+++.++|+|||.++++.+......... . ..-..+.+++++.
T Consensus 121 ~~~fD~I~~~~-~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 199 (280)
T d1jqea_ 121 LQKWDFIHMIQ-MLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNL 199 (280)
T ss_dssp CCCEEEEEEES-CGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHHHHHHH
T ss_pred CCceeEEEEcc-ceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHC
Confidence 78999999999 699999999999999999999999998775321100000 0 0113677888888
Q ss_pred CcEEEE
Q 010274 342 CWKIVS 347 (514)
Q Consensus 342 Gf~~v~ 347 (514)
||....
T Consensus 200 G~~~~~ 205 (280)
T d1jqea_ 200 GLKYEC 205 (280)
T ss_dssp TCCEEE
T ss_pred CCceEE
Confidence 886543
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.39 E-value=6.9e-13 Score=130.75 Aligned_cols=98 Identities=12% Similarity=0.184 Sum_probs=71.9
Q ss_pred CCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCC--eEEEeecCCCCCCCCCCceEEEecccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~--~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
++.+|||||||.|.++.++++ ..|+|+++++..+..+. +.+++.+.. +.+...|...+ +++||.|++.. +
T Consensus 52 ~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~-~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~si~-~ 126 (280)
T d2fk8a1 52 PGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCE-QVLASIDTNRSRQVLLQGWEDF---AEPVDRIVSIE-A 126 (280)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHTSCCSSCEEEEESCGGGC---CCCCSEEEEES-C
T ss_pred CCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHH-HHHHhhccccchhhhhhhhhhh---ccchhhhhHhh-H
Confidence 346899999999999998874 56778877776655444 334444543 34444444443 36899999888 5
Q ss_pred cccccch--HHHHHHHHhhCCCCeEEEEEe
Q 010274 290 IDWLQRD--GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 290 l~~~~d~--~~lL~el~RvLrPGG~lvis~ 317 (514)
++|+.+. ..+|+++.++|||||.+++.+
T Consensus 127 ~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 127 FEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp GGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 7887544 789999999999999999854
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.38 E-value=2.3e-13 Score=131.26 Aligned_cols=102 Identities=19% Similarity=0.277 Sum_probs=77.4
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCCCC-CCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPY-PSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~lp~-~~~sFDlV~~s~~~ 289 (514)
..+|||||||+|..+..++. ..|+|+|+++.++..+. +.+.+.+ .++.+.++|+...++ .+++||+|+|.. +
T Consensus 25 ~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~-~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~-~ 102 (252)
T d1ri5a_ 25 GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDAR-VRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF-S 102 (252)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHH-HHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES-C
T ss_pred cCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc-e
Confidence 36899999999998888874 24788888877776554 2333333 357788899877765 467899999888 5
Q ss_pred cccccc----hHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 290 IDWLQR----DGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 290 l~~~~d----~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
+||..+ ...+|.++.++|||||+|+++.|+
T Consensus 103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 777633 356999999999999999998865
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.38 E-value=5.1e-13 Score=128.11 Aligned_cols=134 Identities=16% Similarity=0.171 Sum_probs=93.3
Q ss_pred CCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCC-CCCCCCceEEEecccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELAHCSRCR 289 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~l-p~~~~sFDlV~~s~~~ 289 (514)
++.+|||||||+|.++..|++ ..|+|+|+++.++..+. +.+..+ .+...+..+.... ++.+..||++++.. .
T Consensus 74 pG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~-~~a~~~-~ni~~i~~d~~~~~~~~~~~~~v~~i~~-~ 150 (230)
T d1g8sa_ 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL-DACAER-ENIIPILGDANKPQEYANIVEKVDVIYE-D 150 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHH-HHTTTC-TTEEEEECCTTCGGGGTTTCCCEEEEEE-C
T ss_pred CCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHhhh-cccceEEEeeccCcccccccceeEEeec-c
Confidence 446899999999999999984 35788888877765443 333333 3455555554433 35566777766544 4
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCCCCC-CChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~-~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
+++..+...++.++.+.|||||+++++...... ........+++..+.++++||++++..+.
T Consensus 151 ~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL 213 (230)
T d1g8sa_ 151 VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDI 213 (230)
T ss_dssp CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred ccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 667788888999999999999999987532211 11222345678889999999999876653
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.37 E-value=9.4e-13 Score=130.12 Aligned_cols=132 Identities=11% Similarity=0.134 Sum_probs=90.4
Q ss_pred CCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
++.+|||||||.|.++.+++. ..|+|+++++..+..+.. .+.+.+. .+.+...|...++ ++||.|++.. .
T Consensus 62 ~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~-~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~-~ 136 (285)
T d1kpga_ 62 PGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQ-LVANSENLRSKRVLLAGWEQFD---EPVDRIVSIG-A 136 (285)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHTCCCCSCEEEEESCGGGCC---CCCSEEEEES-C
T ss_pred CCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHH-HHHhhhhhhhhHHHHhhhhccc---ccccceeeeh-h
Confidence 347899999999999999884 567777777665554442 2233332 4667777776665 6899999887 5
Q ss_pred ccccc--chHHHHHHHHhhCCCCeEEEEEeC---CC---CCC---ChhHH-----------------HhHHHHHHHHHhc
Q 010274 290 IDWLQ--RDGILLLELDRLLRPGGYFVYSSP---EA---YAH---DPENR-----------------RIWNAMYDLLKSM 341 (514)
Q Consensus 290 l~~~~--d~~~lL~el~RvLrPGG~lvis~P---~~---~~~---~~e~~-----------------~~~~~l~~ll~~~ 341 (514)
++|+. +...+++++.|+|||||.+++.+- .. ..+ ..... ....++..++++.
T Consensus 137 ~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~~~~~~e~a 216 (285)
T d1kpga_ 137 FEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASAN 216 (285)
T ss_dssp GGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTT
T ss_pred hhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhhHHHHHHHh
Confidence 77774 347899999999999999997441 10 000 00000 0124677889999
Q ss_pred CcEEEEEecc
Q 010274 342 CWKIVSKKDQ 351 (514)
Q Consensus 342 Gf~~v~~~~~ 351 (514)
||++...++.
T Consensus 217 gf~v~~~~~~ 226 (285)
T d1kpga_ 217 GFTVTRVQSL 226 (285)
T ss_dssp TCEEEEEEEC
T ss_pred chhhcccccc
Confidence 9999877665
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=2.1e-13 Score=130.07 Aligned_cols=147 Identities=14% Similarity=0.093 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEeec
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG 269 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d 269 (514)
..+.+.+++.+.. .+.+|||||||+|.++..+++. .++++|+++..+..+. +.+.+.+..+.+...+
T Consensus 40 ~~~~~~la~~~~~---------~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~-~~~~~~~~~~~~~~~~ 109 (229)
T d1zx0a1 40 TPYMHALAAAASS---------KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLR-DWAPRQTHKVIPLKGL 109 (229)
T ss_dssp HHHHHHHHHHHTT---------TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHH-HHGGGCSSEEEEEESC
T ss_pred HHHHHHHHHhhcc---------CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHH-HHhhhccccccccccc
Confidence 4566666665542 2358999999999999999853 5677777766554443 2223334445555555
Q ss_pred CC--CCCCCCCCceEEEe----cccccccccchHHHHHHHHhhCCCCeEEEEEeCCC-----CCCChhHHHhH-HHHHHH
Q 010274 270 TK--RLPYPSRSFELAHC----SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA-----YAHDPENRRIW-NAMYDL 337 (514)
Q Consensus 270 ~~--~lp~~~~sFDlV~~----s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~-----~~~~~e~~~~~-~~l~~l 337 (514)
.. ..++++++||.|+. +...++|..+...+++++.|+|||||+|++..... ..........+ +.+...
T Consensus 110 ~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (229)
T d1zx0a1 110 WEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPA 189 (229)
T ss_dssp HHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHH
T ss_pred ccccccccccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhhhcchhhhhHHHHH
Confidence 33 33567789999873 22256777888899999999999999998854210 00001111112 355667
Q ss_pred HHhcCcEEEEEe
Q 010274 338 LKSMCWKIVSKK 349 (514)
Q Consensus 338 l~~~Gf~~v~~~ 349 (514)
+.++||+....+
T Consensus 190 l~~agF~~~~i~ 201 (229)
T d1zx0a1 190 LLEAGFRRENIR 201 (229)
T ss_dssp HHHTTCCGGGEE
T ss_pred HHHCCCeeEEEE
Confidence 788899755433
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.9e-13 Score=131.06 Aligned_cols=134 Identities=13% Similarity=0.086 Sum_probs=88.9
Q ss_pred CCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCe----------------------------
Q 010274 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPS---------------------------- 263 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~~---------------------------- 263 (514)
++.+|||||||+|.++..++. ..|+|+|+++.++..++.+.. +.....
T Consensus 51 ~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (257)
T d2a14a1 51 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLK-KEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 129 (257)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHH-TCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHh-hccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence 456899999999998877763 258888888877766553322 211110
Q ss_pred ---EEE----eecCCCCCCCCCCceEEEeccccccccc----chHHHHHHHHhhCCCCeEEEEEeCCCCC---CChh---
Q 010274 264 ---TLG----VLGTKRLPYPSRSFELAHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYA---HDPE--- 326 (514)
Q Consensus 264 ---~~~----~~d~~~lp~~~~sFDlV~~s~~~l~~~~----d~~~lL~el~RvLrPGG~lvis~P~~~~---~~~e--- 326 (514)
... ..+....++++++||+|++.+ ++||+. +...+++++.++|||||+|+++++.... ....
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~-~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~ 208 (257)
T d2a14a1 130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLL-AMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 208 (257)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEES-CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhcccccccccccccccccCCcccEEeehh-hHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccc
Confidence 011 111223467788999999888 577764 4567999999999999999998753211 0000
Q ss_pred -HHHhHHHHHHHHHhcCcEEEEEec
Q 010274 327 -NRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 327 -~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
..-..++++++++++||++++.+.
T Consensus 209 ~~~~~~~~~~~~l~~aGf~v~~~~~ 233 (257)
T d2a14a1 209 CVALEKGEVEQAVLDAGFDIEQLLH 233 (257)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 001236788999999999887543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.35 E-value=6.1e-13 Score=121.21 Aligned_cols=97 Identities=10% Similarity=-0.032 Sum_probs=71.6
Q ss_pred CCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHc-----------------CCCeEEEeecCCCCCC
Q 010274 215 NIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER-----------------GIPSTLGVLGTKRLPY 275 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~r-----------------g~~~~~~~~d~~~lp~ 275 (514)
++.+|||+|||+|..+.+|++ ..|+|+|+++ .+++.|+++ +....+..++...++.
T Consensus 20 ~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~-----~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 94 (201)
T d1pjza_ 20 PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSE-----AAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA 94 (201)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECH-----HHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred CCCEEEEecCcCCHHHHHHHHcCCceEeecccH-----HHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc
Confidence 346899999999999999995 3556665554 455555543 2334667777777653
Q ss_pred -CCCCceEEEecccccccccc--hHHHHHHHHhhCCCCeEEEEEe
Q 010274 276 -PSRSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 276 -~~~sFDlV~~s~~~l~~~~d--~~~lL~el~RvLrPGG~lvis~ 317 (514)
....||+|+++. +++++.+ ...+++++.++|||||++++..
T Consensus 95 ~~~~~~D~i~~~~-~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 95 RDIGHCAAFYDRA-AMIALPADMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp HHHHSEEEEEEES-CGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred ccccceeEEEEEe-eeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence 346899999888 5777754 3679999999999999988765
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.33 E-value=2.5e-12 Score=124.15 Aligned_cols=132 Identities=18% Similarity=0.188 Sum_probs=89.9
Q ss_pred CCCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCCCCCCCCceEEEecc
Q 010274 214 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSR 287 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~lp~~~~sFDlV~~s~ 287 (514)
...++|||||||+|.++..++++ .++++|+ +..+..+. +...+.+ .++.+..+|... +.+ .+||+|+++.
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~-~~~~~~~~~~rv~~~~~D~~~-~~~-~~~D~v~~~~ 154 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTAR-SYLKDEGLSDRVDVVEGDFFE-PLP-RKADAIILSF 154 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHH-HHHHHTTCTTTEEEEECCTTS-CCS-SCEEEEEEES
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHH-HHHHHhhcccchhhccccchh-hcc-cchhheeecc
Confidence 34578999999999999999853 4556676 43454444 3333444 357888888654 223 5799999888
Q ss_pred cccccccch--HHHHHHHHhhCCCCeEEEEEeCCCCC--CChhHHH---------------hHHHHHHHHHhcCcEEEEE
Q 010274 288 CRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYA--HDPENRR---------------IWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 288 ~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~--~~~e~~~---------------~~~~l~~ll~~~Gf~~v~~ 348 (514)
++|+.++. ..+|+++.++|||||+|+|....... ....... ..+++.++++++||++++.
T Consensus 155 -vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v 233 (253)
T d1tw3a2 155 -VLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEV 233 (253)
T ss_dssp -CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred -ccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEE
Confidence 56766655 46899999999999999997643211 1111100 1257888999999998876
Q ss_pred ec
Q 010274 349 KD 350 (514)
Q Consensus 349 ~~ 350 (514)
+.
T Consensus 234 ~~ 235 (253)
T d1tw3a2 234 RQ 235 (253)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.32 E-value=6.5e-13 Score=130.79 Aligned_cols=116 Identities=18% Similarity=0.282 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCC-----eEE
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIP-----STL 265 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~-----~~~ 265 (514)
..+.+.+.+.+... ..++|||||||+|.++..|++. .|+|+|+++.++..+..+. ..++.. ..+
T Consensus 42 ~~~~~~l~~~l~~~--------~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~-~~~~~~~~~~~~~~ 112 (292)
T d1xvaa_ 42 AEYKAWLLGLLRQH--------GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKER-WNRRKEPAFDKWVI 112 (292)
T ss_dssp HHHHHHHHHHHHHT--------TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HHTTTSHHHHTCEE
T ss_pred HHHHHHHHHHhhhc--------CCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHH-Hhcccccccceeee
Confidence 44555566666532 2358999999999999999864 6778877777665554322 222222 223
Q ss_pred EeecCC----CCCCCCCCceEEEecccccccccc-------hHHHHHHHHhhCCCCeEEEEEeC
Q 010274 266 GVLGTK----RLPYPSRSFELAHCSRCRIDWLQR-------DGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 266 ~~~d~~----~lp~~~~sFDlV~~s~~~l~~~~d-------~~~lL~el~RvLrPGG~lvis~P 318 (514)
...+.. .+|. .++||+|+|...+++|+++ ...+|+++.|+|||||+|++...
T Consensus 113 ~~~~~~~~~~~~~~-~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 113 EEANWLTLDKDVPA-GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp EECCGGGHHHHSCC-TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eeccccccccccCC-CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 333322 2333 4689999998767888754 35699999999999999999664
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.29 E-value=9.8e-12 Score=114.55 Aligned_cols=136 Identities=15% Similarity=0.191 Sum_probs=98.0
Q ss_pred CccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC--CeE
Q 010274 189 HDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI--PST 264 (514)
Q Consensus 189 ~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~--~~~ 264 (514)
.....+....+...+.. .+..+|||||||+|.++..++. .+|+++|+++.++..+..+ +++.+. ++.
T Consensus 15 ~~t~~eir~~il~~l~~--------~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n-~~~~gl~~~v~ 85 (186)
T d1l3ia_ 15 GPTAMEVRCLIMCLAEP--------GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMN-LQRHGLGDNVT 85 (186)
T ss_dssp CCCCHHHHHHHHHHHCC--------CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHH-HHHTTCCTTEE
T ss_pred CCChHHHHHHHHHhcCC--------CCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHH-HHHcCCCcceE
Confidence 34445555566666653 2346899999999999999985 3688999988887766644 444453 678
Q ss_pred EEeecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcE
Q 010274 265 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (514)
Q Consensus 265 ~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~ 344 (514)
+.++|+.+.+++...||+|++... . .+...+++++.+.|||||++++..... + ....+.+.++..||.
T Consensus 86 ~~~gda~~~~~~~~~~D~v~~~~~-~---~~~~~~~~~~~~~LkpgG~lvi~~~~~-----e---~~~~~~~~l~~~~~~ 153 (186)
T d1l3ia_ 86 LMEGDAPEALCKIPDIDIAVVGGS-G---GELQEILRIIKDKLKPGGRIIVTAILL-----E---TKFEAMECLRDLGFD 153 (186)
T ss_dssp EEESCHHHHHTTSCCEEEEEESCC-T---TCHHHHHHHHHHTEEEEEEEEEEECBH-----H---HHHHHHHHHHHTTCC
T ss_pred EEECchhhcccccCCcCEEEEeCc-c---ccchHHHHHHHHHhCcCCEEEEEeecc-----c---cHHHHHHHHHHcCCC
Confidence 888998877777789999998763 2 334678999999999999999865321 1 123456677777874
Q ss_pred E
Q 010274 345 I 345 (514)
Q Consensus 345 ~ 345 (514)
.
T Consensus 154 ~ 154 (186)
T d1l3ia_ 154 V 154 (186)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.29 E-value=4.5e-12 Score=117.55 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=90.9
Q ss_pred cCceeecCCCCCCCCc-cHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHH
Q 010274 175 NGEKINFPGGGTHFHD-GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHEN 251 (514)
Q Consensus 175 ~g~~~~Fpggg~~F~~-ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a 251 (514)
.|..+.|......|.. +.+...+.+.+.+.. .+..+|||||||+|.++..++. .+|+++|+++..+..+
T Consensus 19 ~g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~~--------~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a 90 (194)
T d1dusa_ 19 RGKKLKFKTDSGVFSYGKVDKGTKILVENVVV--------DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLA 90 (194)
T ss_dssp TTEEEEEEEETTSTTTTSCCHHHHHHHHHCCC--------CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHH
T ss_pred CCeeEEEEcCCCccCCCCcCHHHHHHHHhCCc--------CCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhH
Confidence 4555666333334433 233334455555543 2346899999999999999985 4688888888777666
Q ss_pred HHHHHHHc--CCCeEEEeecCCCCCCCCCCceEEEecccccccccch-HHHHHHHHhhCCCCeEEEEEeC
Q 010274 252 QIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 252 ~~~~A~~r--g~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~-~~lL~el~RvLrPGG~lvis~P 318 (514)
..+..... ...+.+...|..+ ++++++||+|+|+. .+++..+. ..+++++.++|+|||.+++...
T Consensus 91 ~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~-p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 91 KENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNP-PIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp HHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECC-CSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEcc-cEEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 54433322 2346777777765 56778999999876 45555443 6789999999999999988653
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.27 E-value=1.2e-11 Score=116.27 Aligned_cols=120 Identities=11% Similarity=0.161 Sum_probs=90.4
Q ss_pred eEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCCC--CCCCCceEEEeccccc
Q 010274 218 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLP--YPSRSFELAHCSRCRI 290 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~lp--~~~~sFDlV~~s~~~l 290 (514)
.|||||||+|.++..|+. ..++|+|++...+..+.. .+.+.+ .++.+..+|+..+. ++++++|.|++.+ ..
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~-~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f-p~ 109 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQ-KVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF-SD 109 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHH-HHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES-CC
T ss_pred eEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHH-HHHHHhccCchhcccchhhhhcccCchhhhcccccc-cc
Confidence 699999999999999984 568899999888877664 444444 46888999987765 7889999999776 46
Q ss_pred ccccch--------HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEE
Q 010274 291 DWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 291 ~~~~d~--------~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~ 347 (514)
+|.... ..+|.++.|+|||||.|.+.+-. ...++.+.+.+.+.++....
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~--------~~y~~~~~~~~~~~~~~~~~ 166 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN--------RGLFEYSLKSFSEYGLLLTY 166 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC--------HHHHHHHHHHHHHHTCEEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECC--------hHHHHHHHHHHHHCCCcccc
Confidence 665432 46999999999999999986511 12245667777777765443
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.27 E-value=5.4e-12 Score=119.04 Aligned_cols=134 Identities=15% Similarity=0.068 Sum_probs=88.9
Q ss_pred CCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
++.+|||||||+|.++.+|++ ..|+|+|+++.++..+. +.++.+ .++.+...+....+.....+|.+.+.+..+
T Consensus 56 pg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~-~~a~~~-~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~ 133 (209)
T d1nt2a_ 56 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL-ELVRER-NNIIPLLFDASKPWKYSGIVEKVDLIYQDI 133 (209)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH-HHHHHC-SSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHH-HHhhcc-CCceEEEeeccCccccccccceEEEEEecc
Confidence 346899999999999998884 35899999998887665 445554 367788787766554444444443222235
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCC-CCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEA-YAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~-~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
++..+...++.++.++|||||++++..... .....+....++...+.++ .||++++..+.
T Consensus 134 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~-~gf~i~E~i~L 194 (209)
T d1nt2a_ 134 AQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEME-GDFKIVKHGSL 194 (209)
T ss_dssp CSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHH-TTSEEEEEEEC
T ss_pred cChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHH-cCCEEEEEEcc
Confidence 556677889999999999999999875210 0011122234455555554 69998876543
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.24 E-value=2.3e-11 Score=117.90 Aligned_cols=131 Identities=19% Similarity=0.179 Sum_probs=87.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
..++|||||||+|.++..++++ .++++|+ +..+..+. +...+.+. .+.+...|... +.+ .+||+|++.+
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~-~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~- 155 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERAR-RRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSF- 155 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHH-HHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEES-
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHH-HHHhhcCCcceeeeeeeeccc-ccc-ccchhhhccc-
Confidence 3468999999999999999853 4567776 43343333 33333343 45666666543 444 4699999998
Q ss_pred ccccccch--HHHHHHHHhhCCCCeEEEEEeCCC---CCCChhHHH---------------hHHHHHHHHHhcCcEEEEE
Q 010274 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPEA---YAHDPENRR---------------IWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 289 ~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~---~~~~~e~~~---------------~~~~l~~ll~~~Gf~~v~~ 348 (514)
++|+.++. ..+|++++++|||||+|+|.++.. ......... ..+++.++++++||++++.
T Consensus 156 vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~~ 235 (256)
T d1qzza2 156 VLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASE 235 (256)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEE
T ss_pred cccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeEE
Confidence 46655554 468999999999999999977421 111111000 1357889999999998876
Q ss_pred ec
Q 010274 349 KD 350 (514)
Q Consensus 349 ~~ 350 (514)
+.
T Consensus 236 ~~ 237 (256)
T d1qzza2 236 RT 237 (256)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=2.4e-12 Score=125.24 Aligned_cols=135 Identities=13% Similarity=0.090 Sum_probs=85.5
Q ss_pred CCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC-C----------------------------
Q 010274 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI-P---------------------------- 262 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~-~---------------------------- 262 (514)
++.+|||||||+|.+....+. .+|+++|+++.++..++.......+. +
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 133 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhh
Confidence 457999999999987765542 35888888777765554222111000 0
Q ss_pred -eEEEeecCC------CCCCCCCCceEEEeccccccccc----chHHHHHHHHhhCCCCeEEEEEeCCCCCCC---h---
Q 010274 263 -STLGVLGTK------RLPYPSRSFELAHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYAHD---P--- 325 (514)
Q Consensus 263 -~~~~~~d~~------~lp~~~~sFDlV~~s~~~l~~~~----d~~~lL~el~RvLrPGG~lvis~P~~~~~~---~--- 325 (514)
......|+. ..++..++||+|+|.+ ++|++. +...+++++.++|||||+|++.++...... .
T Consensus 134 ~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~-~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~ 212 (263)
T d2g72a1 134 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAF-CLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL 212 (263)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEES-CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred hhccccccccCCCccccCCcCcCccCeeeeHH-HHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCccc
Confidence 012223322 2234457899999998 477764 446799999999999999998775221100 0
Q ss_pred -hHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 326 -ENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 326 -e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
...-..+++.++++++||+++..+.
T Consensus 213 ~~~~~t~e~v~~~l~~aGf~v~~~~~ 238 (263)
T d2g72a1 213 TVVPVSEEEVREALVRSGYKVRDLRT 238 (263)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ccCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 0001236889999999999886544
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=1.9e-11 Score=116.04 Aligned_cols=146 Identities=13% Similarity=0.032 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHH-------------
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFAL------------- 257 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~------------- 257 (514)
....+.+.+.+.. ....+|||+|||+|..+.+|++ ..|+|+|+|+.++..+..+...
T Consensus 31 ~~l~~~~~~~l~~--------~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~ 102 (229)
T d2bzga1 31 QLLKKHLDTFLKG--------KSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGT 102 (229)
T ss_dssp HHHHHHHHHHHTT--------CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTC
T ss_pred HHHHHHHHHhcCC--------CCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhccccc
Confidence 3344455555542 2346899999999999999995 4677777776665433322111
Q ss_pred ----HcCCCeEEEeecCCCCC-CCCCCceEEEeccccccccc--chHHHHHHHHhhCCCCeEEEEEeCCCCC---CChhH
Q 010274 258 ----ERGIPSTLGVLGTKRLP-YPSRSFELAHCSRCRIDWLQ--RDGILLLELDRLLRPGGYFVYSSPEAYA---HDPEN 327 (514)
Q Consensus 258 ----~rg~~~~~~~~d~~~lp-~~~~sFDlV~~s~~~l~~~~--d~~~lL~el~RvLrPGG~lvis~P~~~~---~~~e~ 327 (514)
..+..+.+.++|...++ ...+.||+|+...+ ++++. +...+++++.++|||||++++....... ..+..
T Consensus 103 ~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~-l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~ 181 (229)
T d2bzga1 103 KVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGA-LVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPF 181 (229)
T ss_dssp EEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSS-TTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSC
T ss_pred ceeeecCCcEEEEEcchhhccccccCceeEEEEEEE-EEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCC
Confidence 01235677888877664 55688999998774 55553 3367999999999999998876532100 00000
Q ss_pred HHhHHHHHHHHHhcCcEEEEE
Q 010274 328 RRIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 328 ~~~~~~l~~ll~~~Gf~~v~~ 348 (514)
.-.-+++..++.. +|.+...
T Consensus 182 ~~~~~el~~lf~~-~~~i~~l 201 (229)
T d2bzga1 182 YVPHAEIERLFGK-ICNIRCL 201 (229)
T ss_dssp CCCHHHHHHHHTT-TEEEEEE
T ss_pred CCCHHHHHHHhcC-CCEEEEE
Confidence 0012456777755 6765443
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.20 E-value=2.8e-11 Score=118.07 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=89.2
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHc---CCCeEEEeecCCCCCCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~r---g~~~~~~~~d~~~lp~~~~sFDlV~~s~ 287 (514)
+.+|||+|||+|.++..|+. ..|+++|+++..+..+..++.... ..++.+.+.|..+.++++++||.|++
T Consensus 97 G~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~l-- 174 (264)
T d1i9ga_ 97 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL-- 174 (264)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE--
T ss_pred CCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEEE--
Confidence 46899999999999999984 368899888777766654443322 24678889999888999999999984
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEE
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~ 347 (514)
+++++..++.++.++|||||.+++..|..- +..+.++.+-.+.+|..++
T Consensus 175 ----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i~-------Qv~~~~~~l~~~~~f~~i~ 223 (264)
T d1i9ga_ 175 ----DMLAPWEVLDAVSRLLVAGGVLMVYVATVT-------QLSRIVEALRAKQCWTEPR 223 (264)
T ss_dssp ----ESSCGGGGHHHHHHHEEEEEEEEEEESSHH-------HHHHHHHHHHHHSSBCCCE
T ss_pred ----ecCCHHHHHHHHHhccCCCCEEEEEeCccC-------hHHHHHHHHHHcCCeecce
Confidence 367888899999999999999999887541 2223334444466786544
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.17 E-value=1.5e-10 Score=108.59 Aligned_cols=120 Identities=11% Similarity=0.114 Sum_probs=88.0
Q ss_pred eEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC--CCCCCceEEEecccccc
Q 010274 218 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHCSRCRID 291 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp--~~~~sFDlV~~s~~~l~ 291 (514)
.|||||||+|.++..+|. ..++|+|++...+..+..+..+....++.+..+|+..+. +++.++|.|++.+ -.+
T Consensus 34 lvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f-PdP 112 (204)
T d1yzha1 34 IHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF-SDP 112 (204)
T ss_dssp EEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES-CCC
T ss_pred eEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc-ccc
Confidence 699999999999999984 467899998887776664443333446888888887765 6788999999776 355
Q ss_pred cccch--------HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 292 WLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 292 ~~~d~--------~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
|.... ..+|.++.++|||||.|.+.+-. + ..++.+...+...++...
T Consensus 113 w~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~------~--~Y~~~~le~~~~~~~~~~ 167 (204)
T d1yzha1 113 WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN------R--GLFEYSLVSFSQYGMKLN 167 (204)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC------H--HHHHHHHHHHHHHTCEEE
T ss_pred ccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECC------c--cHHHHHHHHHHHCCcccc
Confidence 54332 56999999999999999986521 1 123455566677777544
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.16 E-value=4e-11 Score=116.02 Aligned_cols=119 Identities=8% Similarity=0.119 Sum_probs=87.6
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
+.+|||+|||+|.++..|+. ..|+++|+++..+..+..++.+..+ .++.+...|..+. +++++||.|++.
T Consensus 86 G~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~ld--- 161 (250)
T d1yb2a1 86 GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVIAD--- 161 (250)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEEEC---
T ss_pred cCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeeeec---
Confidence 46899999999999999884 3688888877666555544333222 3678888887665 456899999843
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
++++..++.++.++|||||+|++..|.. .+..++.+.+++.||..++..
T Consensus 162 ---~p~p~~~l~~~~~~LKpGG~lv~~~P~i--------~Qv~~~~~~l~~~gf~~i~~~ 210 (250)
T d1yb2a1 162 ---IPDPWNHVQKIASMMKPGSVATFYLPNF--------DQSEKTVLSLSASGMHHLETV 210 (250)
T ss_dssp ---CSCGGGSHHHHHHTEEEEEEEEEEESSH--------HHHHHHHHHSGGGTEEEEEEE
T ss_pred ---CCchHHHHHHHHHhcCCCceEEEEeCCc--------ChHHHHHHHHHHCCCceeEEE
Confidence 4667789999999999999999988753 223456667788999766433
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.12 E-value=6e-11 Score=111.91 Aligned_cols=109 Identities=8% Similarity=0.006 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEee
Q 010274 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVL 268 (514)
Q Consensus 194 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~ 268 (514)
.....+.+.+.. .+..+|||||||+|.++..|+. ..|+++|+++..+..+..+.......++.+..+
T Consensus 62 ~~~a~~l~~l~l--------~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~ 133 (213)
T d1dl5a1 62 SLMALFMEWVGL--------DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG 133 (213)
T ss_dssp HHHHHHHHHTTC--------CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred hhhHHHHHhhhc--------cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccC
Confidence 344445555553 2346899999999999998873 358889888877766664444333446777788
Q ss_pred cCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 269 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 269 d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
|.....+.+++||+|++.. .+++++ .++.+.|||||+|++..
T Consensus 134 d~~~~~~~~~~fD~I~~~~-~~~~~p------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 134 DGYYGVPEFSPYDVIFVTV-GVDEVP------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp CGGGCCGGGCCEEEEEECS-BBSCCC------HHHHHHEEEEEEEEEEB
T ss_pred chHHccccccchhhhhhhc-cHHHhH------HHHHHhcCCCcEEEEEE
Confidence 8777777778999999887 466654 35678899999999854
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.07 E-value=2.8e-10 Score=110.92 Aligned_cols=118 Identities=13% Similarity=0.122 Sum_probs=85.9
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
+.+|||+|||+|.++..|+. ..|+++|+++..+..+..+. ...+. .+.+...|.. ..++...||.|+.
T Consensus 104 G~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~-~~~g~~~~v~~~~~d~~-~~~~~~~~D~V~~--- 178 (266)
T d1o54a_ 104 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNL-TKWGLIERVTIKVRDIS-EGFDEKDVDALFL--- 178 (266)
T ss_dssp TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHH-HHTTCGGGEEEECCCGG-GCCSCCSEEEEEE---
T ss_pred CCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH-HHhccccCcEEEecccc-ccccccceeeeEe---
Confidence 46899999999999999974 36889988887776666443 33343 3445555532 3455678998862
Q ss_pred ccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
+++++..++.++.++|||||.|++..|.. ....++.+.+++.||..++..
T Consensus 179 ---d~p~p~~~l~~~~~~LKpGG~lv~~~P~~--------~Qv~~~~~~l~~~gF~~i~~~ 228 (266)
T d1o54a_ 179 ---DVPDPWNYIDKCWEALKGGGRFATVCPTT--------NQVQETLKKLQELPFIRIEVW 228 (266)
T ss_dssp ---CCSCGGGTHHHHHHHEEEEEEEEEEESSH--------HHHHHHHHHHHHSSEEEEEEE
T ss_pred ---cCCCHHHHHHHHHhhcCCCCEEEEEeCcc--------cHHHHHHHHHHHCCceeEEEE
Confidence 36788889999999999999999987643 234566677888999776543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.03 E-value=2.6e-10 Score=108.65 Aligned_cols=130 Identities=13% Similarity=0.155 Sum_probs=86.5
Q ss_pred CCCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCC---CCCCCCCCceEEEec
Q 010274 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK---RLPYPSRSFELAHCS 286 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~---~lp~~~~sFDlV~~s 286 (514)
++.+|||+|||+|.++.+|++ ..|+++|+++.++..+. +.++.+ .+...+..|.. ..+.....+|+|++.
T Consensus 73 pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~-~~a~~~-~~~~~i~~d~~~~~~~~~~~~~vD~i~~d 150 (227)
T d1g8aa_ 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEER-RNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSSC-TTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHHhc-CCceEEEEECCCcccccccccceEEEEEE
Confidence 447899999999999999984 46889999888776554 344333 34445555543 233445678988854
Q ss_pred ccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCC-CChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 287 ~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~-~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+++..+...++.++.+.|||||+++++...... ........+.+++.++ +.||++++..+
T Consensus 151 ---~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~-~~gf~iie~i~ 211 (227)
T d1g8aa_ 151 ---VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEYFEVIERLN 211 (227)
T ss_dssp ---CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTTSEEEEEEE
T ss_pred ---ccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHH-HcCCEEEEEEc
Confidence 445566788999999999999999987532111 1112223345555555 45999887544
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=3.4e-10 Score=112.19 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcC--CCeEEEe
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERG--IPSTLGV 267 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~ 267 (514)
+.|.+.|.+.... .+.++|||||||+|.++..+++ ..|+++|.++.... +. +.+.+.+ ..+.+..
T Consensus 21 ~~y~~ai~~~~~~--------~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~-~~~~~~~~~~~i~~~~ 90 (311)
T d2fyta1 21 ESYRDFIYQNPHI--------FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AM-DIIRLNKLEDTITLIK 90 (311)
T ss_dssp HHHHHHHHHCGGG--------TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HH-HHHHHTTCTTTEEEEE
T ss_pred HHHHHHHHhcccc--------CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HH-HHHHHhCCCccceEEE
Confidence 4566665544332 1346899999999999998885 36889998876543 22 3333333 4578888
Q ss_pred ecCCCCCCCCCCceEEEeccccccccc---chHHHHHHHHhhCCCCeEEE
Q 010274 268 LGTKRLPYPSRSFELAHCSRCRIDWLQ---RDGILLLELDRLLRPGGYFV 314 (514)
Q Consensus 268 ~d~~~lp~~~~sFDlV~~s~~~l~~~~---d~~~lL~el~RvLrPGG~lv 314 (514)
++..++++++++||+|+|.. ..++.. ....++....++|||||+++
T Consensus 91 ~~~~~l~~~~~~~D~Ivse~-~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 91 GKIEEVHLPVEKVDVIISEW-MGYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp SCTTTSCCSCSCEEEEEECC-CBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred eeHHHhcCccccceEEEEee-eeeecccccccHHHHHHHHhcCCCCcEEe
Confidence 99999999889999999754 344332 23567888899999999997
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.98 E-value=4.8e-10 Score=112.05 Aligned_cols=97 Identities=18% Similarity=0.244 Sum_probs=72.8
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccc--
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC-- 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~-- 288 (514)
.++|||||||+|.++..+++ ..|+++|.++. ... ..+.+++.+. .+.++.++...+++++++||+|++...
T Consensus 39 ~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~-~~~-a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSI-IEM-AKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTH-HHH-HHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHH-HHH-HHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 36899999999999988874 36889998863 322 3344444443 578888999999999999999998542
Q ss_pred ccccccchHHHHHHHHhhCCCCeEEE
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGYFV 314 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~lv 314 (514)
.+.+......++.++.|+|||||.++
T Consensus 117 ~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeccchhHHHHHHHHHhccCCCeEEE
Confidence 22333445778999999999999987
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=4.5e-10 Score=112.56 Aligned_cols=117 Identities=13% Similarity=0.045 Sum_probs=83.3
Q ss_pred cHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHH--H------
Q 010274 191 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFAL--E------ 258 (514)
Q Consensus 191 ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~--~------ 258 (514)
......+.+.+.+... +..+|||||||+|.++..++. ..++|+|+++..+..+..+... .
T Consensus 135 ~~~~~~~~~~~~~~l~--------~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g 206 (328)
T d1nw3a_ 135 TSFDLVAQMIDEIKMT--------DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG 206 (328)
T ss_dssp CCHHHHHHHHHHSCCC--------TTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCC--------CCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcc
Confidence 3344555555555532 235899999999999988873 2588999988776555433222 1
Q ss_pred -cCCCeEEEeecCCCCCCCCCCc--eEEEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 259 -RGIPSTLGVLGTKRLPYPSRSF--ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 259 -rg~~~~~~~~d~~~lp~~~~sF--DlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+..++.+..+|+..+++.+..| |+|+++. +.|.++....|.++.|+|||||+++...
T Consensus 207 ~~~~~i~~~~gd~~~~~~~~~~~~advi~~~~--~~f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 207 KKHAEYTLERGDFLSEEWRERIANTSVIFVNN--FAFGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp CCCCCEEEEECCTTSHHHHHHHHHCSEEEECC--TTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccCCceEEEECcccccccccccCcceEEEEcc--eecchHHHHHHHHHHHhCCCCcEEEEec
Confidence 2346889999998888776555 5666544 4466788889999999999999998754
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.94 E-value=6.7e-10 Score=110.44 Aligned_cols=96 Identities=16% Similarity=0.196 Sum_probs=73.5
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
.++|||||||+|.++..+++ ..|+++|.++.. ..+ .+.++..+. .+.+..++..+++++.++||+|++.. ..
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a-~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~-~~ 110 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYA-VKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW-MG 110 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHH-HHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC-CB
T ss_pred cCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhh-hhHHHHhCCccccceEeccHHHcccccceeEEEeeee-ee
Confidence 36899999999999988884 358899988753 233 344444443 47888899999999989999999754 34
Q ss_pred ccc---cchHHHHHHHHhhCCCCeEEE
Q 010274 291 DWL---QRDGILLLELDRLLRPGGYFV 314 (514)
Q Consensus 291 ~~~---~d~~~lL~el~RvLrPGG~lv 314 (514)
++. .....++..+.|+|||||.++
T Consensus 111 ~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 111 YCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 433 345779999999999999987
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=5.9e-10 Score=105.86 Aligned_cols=95 Identities=17% Similarity=0.171 Sum_probs=72.3
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHc-----CCCeEEEeecCCCCCCCCCCceEEEe
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~r-----g~~~~~~~~d~~~lp~~~~sFDlV~~ 285 (514)
+.+|||||||+|..+..|+. ..|+++|+++..+..+..+..+.. ...+.+..+|....+.++++||.|++
T Consensus 77 g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I~~ 156 (224)
T d1i1na_ 77 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHV 156 (224)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhhhh
Confidence 46899999999998888773 368899988877766664443322 23567788888877777789999998
Q ss_pred cccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 286 s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
.. .+++++ .++.+.|||||+|++..
T Consensus 157 ~~-~~~~ip------~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 157 GA-AAPVVP------QALIDQLKPGGRLILPV 181 (224)
T ss_dssp CS-BBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred hc-chhhcC------HHHHhhcCCCcEEEEEE
Confidence 87 466554 35788999999999854
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=1.1e-09 Score=107.05 Aligned_cols=121 Identities=17% Similarity=0.146 Sum_probs=87.3
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||+|||+|.++..++. ..|+++|+++..+..+..+ ++..+. ++.+...|... ++++++||+|+|+--.+
T Consensus 109 ~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~N-a~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 109 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRN-AQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHH-HHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCB
T ss_pred ccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHH-HHHhCcccceeeeccccc-ccCCCceeEEEecchhh
Confidence 35799999999999998873 5789999999888777744 444454 58888887544 34567999999863211
Q ss_pred ------------cccc------------chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 291 ------------DWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 291 ------------~~~~------------d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
.|-+ ....++.++.+.|+|||.+++..... ..+.+.+++++.||..+
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~---------q~~~v~~~l~~~gf~~i 257 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ---------QGEAVRQAFILAGYHDV 257 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS---------CHHHHHHHHHHTTCTTC
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECch---------HHHHHHHHHHHCCCCeE
Confidence 1111 11448899999999999999965321 13578899999999654
Q ss_pred E
Q 010274 347 S 347 (514)
Q Consensus 347 ~ 347 (514)
+
T Consensus 258 ~ 258 (274)
T d2b3ta1 258 E 258 (274)
T ss_dssp C
T ss_pred E
Confidence 4
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=3.8e-09 Score=105.56 Aligned_cols=120 Identities=12% Similarity=0.080 Sum_probs=81.4
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHc-----------CCCeEEEeecCCCCC--CCC
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-----------GIPSTLGVLGTKRLP--YPS 277 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~r-----------g~~~~~~~~d~~~lp--~~~ 277 (514)
+.+|||+|||+|.++..|+. ..|+++|+++..+..+..++.+.. ..++.+...|+.... +++
T Consensus 99 G~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~ 178 (324)
T d2b25a1 99 GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKS 178 (324)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-----
T ss_pred CCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccccCC
Confidence 46899999999999999984 368899888877766665444321 235677777766553 456
Q ss_pred CCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHH--hcCcEEEEEe
Q 010274 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLK--SMCWKIVSKK 349 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~--~~Gf~~v~~~ 349 (514)
..||.|+. .++++..++.++.++|||||+|++..|..- +..++.+.++ ..+|..++..
T Consensus 179 ~~fD~V~L------D~p~P~~~l~~~~~~LKpGG~lv~~~P~i~--------Qv~~~~~~l~~~~~~f~~i~~~ 238 (324)
T d2b25a1 179 LTFDAVAL------DMLNPHVTLPVFYPHLKHGGVCAVYVVNIT--------QVIELLDGIRTCELALSCEKIS 238 (324)
T ss_dssp --EEEEEE------CSSSTTTTHHHHGGGEEEEEEEEEEESSHH--------HHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCcceEee------cCcCHHHHHHHHHHhccCCCEEEEEeCCHH--------HHHHHHHHHHHcCCCceeeEEE
Confidence 78999984 246677799999999999999999877541 1223344444 3478776543
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.79 E-value=5.9e-09 Score=98.90 Aligned_cols=93 Identities=11% Similarity=0.098 Sum_probs=67.0
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..+|||||||+|.++..|+. ..|+++|+++.....+.... ....++.+..+|........++||.|++.. ..+++
T Consensus 71 g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~--~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~-a~~~i 147 (224)
T d1vbfa_ 71 GQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLL--SYYNNIKLILGDGTLGYEEEKPYDRVVVWA-TAPTL 147 (224)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHH--TTCSSEEEEESCGGGCCGGGCCEEEEEESS-BBSSC
T ss_pred cceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHH--hcccccccccCchhhcchhhhhHHHHHhhc-chhhh
Confidence 36899999999999988874 56888888776655444222 234577888888655444557899999877 45555
Q ss_pred cchHHHHHHHHhhCCCCeEEEEEe
Q 010274 294 QRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+ ..+.+.|||||+|++..
T Consensus 148 p------~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 148 L------CKPYEQLKEGGIMILPI 165 (224)
T ss_dssp C------HHHHHTEEEEEEEEEEE
T ss_pred h------HHHHHhcCCCCEEEEEE
Confidence 4 34567899999999843
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.76 E-value=3.2e-08 Score=95.75 Aligned_cols=157 Identities=12% Similarity=0.102 Sum_probs=103.2
Q ss_pred ccCceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhH
Q 010274 174 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHE 250 (514)
Q Consensus 174 ~~g~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~ 250 (514)
.+|-.+.+.-....|..+.......+.+.+. .+.+|||+|||+|.++..++. ..|+++|+++..+..
T Consensus 76 E~g~~~~~d~~~~~f~~~~~~er~ri~~~~~----------~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~ 145 (260)
T d2frna1 76 ENGIKYKLDVAKIMFSPANVKERVRMAKVAK----------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKF 145 (260)
T ss_dssp ETTEEEEEETTTSCCCGGGHHHHHHHHHHCC----------TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHH
T ss_pred ecCeeEEeccccccEecCCHHHHHHHHhhcC----------CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHH
Confidence 3455556655566677666555555665543 236899999999999998873 478999999987766
Q ss_pred HHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHH
Q 010274 251 NQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR 328 (514)
Q Consensus 251 a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~ 328 (514)
+..+ ++..+. .+.+..+|+..++. .+.||.|++.. . +....++.++.++|++||.+.+..-..-. ....
T Consensus 146 ~~~N-~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~--p---~~~~~~l~~a~~~l~~gG~lh~~~~~~~~--~~~~ 216 (260)
T d2frna1 146 LVEN-IHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGY--V---VRTHEFIPKALSIAKDGAIIHYHNTVPEK--LMPR 216 (260)
T ss_dssp HHHH-HHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECC--C---SSGGGGHHHHHHHEEEEEEEEEEEEEEGG--GTTT
T ss_pred HHHH-HHHhCCCceEEEEEcchHHhcc-CCCCCEEEECC--C---CchHHHHHHHHhhcCCCCEEEEEeccccc--cchh
Confidence 5543 444444 46788888877754 47899998543 2 23345788899999999998653210000 0001
Q ss_pred HhHHHHHHHHHhcCcEEEEEe
Q 010274 329 RIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 329 ~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
...+.+.++++..|+++....
T Consensus 217 ~~~e~~~~~~~~~g~~v~~~~ 237 (260)
T d2frna1 217 EPFETFKRITKEYGYDVEKLN 237 (260)
T ss_dssp TTHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHHHHHHcCCceEEEE
Confidence 123456788889999775433
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.69 E-value=9.3e-09 Score=102.40 Aligned_cols=125 Identities=13% Similarity=0.079 Sum_probs=84.5
Q ss_pred CCeEEEECCCCchHHHHHh--cCCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCC----CCCCCCCceEEEeccc
Q 010274 216 IRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR----LPYPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La--~~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~----lp~~~~sFDlV~~s~~ 288 (514)
+++|||++||+|.++.+++ .+.|+++|+++..+..+..+. +..|. ++.++.+|..+ ++...++||+|++.--
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~-~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP 224 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENA-RLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP 224 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHH-HHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHH-HHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCC
Confidence 4689999999999999887 357899999998887776444 44454 57788887544 3445578999997421
Q ss_pred ccc--------cccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcE
Q 010274 289 RID--------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (514)
Q Consensus 289 ~l~--------~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~ 344 (514)
... ...+...++..+.++|||||.|++++...... .+ ...+.+.+.+..+|-.
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~-~~--~f~~~v~~a~~~a~~~ 285 (318)
T d1wxxa2 225 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMT-EP--LFYAMVAEAAQDAHRL 285 (318)
T ss_dssp CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-HH--HHHHHHHHHHHHTTCC
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccC-HH--HHHHHHHHHHHHcCCC
Confidence 111 11223458899999999999999987543211 11 1223455666677643
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.68 E-value=2.4e-08 Score=94.05 Aligned_cols=108 Identities=13% Similarity=0.134 Sum_probs=75.7
Q ss_pred HHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHh---cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCC
Q 010274 195 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL---SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK 271 (514)
Q Consensus 195 y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La---~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~ 271 (514)
....+.+.+... +..+|||||||+|..++.|+ +..|+++|..+.....+..+..+....++.+..+|..
T Consensus 66 ~~a~ml~~L~l~--------~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~ 137 (215)
T d1jg1a_ 66 MVAIMLEIANLK--------PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS 137 (215)
T ss_dssp HHHHHHHHHTCC--------TTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG
T ss_pred hHHHHHHhhccC--------ccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccc
Confidence 344555666542 23579999999999998877 4468899888766655554433333357888888877
Q ss_pred CCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 272 RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 272 ~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
......+.||.|++.. ..+.+++ .+...|+|||++++..
T Consensus 138 ~g~~~~~pfD~Iiv~~-a~~~ip~------~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 138 KGFPPKAPYDVIIVTA-GAPKIPE------PLIEQLKIGGKLIIPV 176 (215)
T ss_dssp GCCGGGCCEEEEEECS-BBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred cCCcccCcceeEEeec-ccccCCH------HHHHhcCCCCEEEEEE
Confidence 6655678899999876 4555543 2456799999999754
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.62 E-value=2.6e-08 Score=102.12 Aligned_cols=120 Identities=6% Similarity=0.011 Sum_probs=78.2
Q ss_pred CCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHc----
Q 010274 188 FHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALER---- 259 (514)
Q Consensus 188 F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~r---- 259 (514)
+....-.++..+.+.+.+. +..++||||||+|.++..++. ..++|+|+++.++..+..+.....
T Consensus 197 YGEl~~~~i~~Il~~l~Lk--------pgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~ 268 (406)
T d1u2za_ 197 YGELLPNFLSDVYQQCQLK--------KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCK 268 (406)
T ss_dssp CCCBCHHHHHHHHHHTTCC--------TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhCCC--------CCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhh
Confidence 3444455666666666542 336899999999999988873 358899999887766664443221
Q ss_pred --CC---CeEE-EeecCCCCCCC---CCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 260 --GI---PSTL-GVLGTKRLPYP---SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 260 --g~---~~~~-~~~d~~~lp~~---~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+. ...+ ...+....++. -..+|+|++.. ..+.++....|.++.|+|||||+++.+.
T Consensus 269 ~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn--~~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 269 LYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN--FLFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp HTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECC--TTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred hhccccccceeeeeechhhccccccccccceEEEEec--ccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 11 2222 22222222211 12467888654 4567788889999999999999998765
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.55 E-value=3.2e-08 Score=93.64 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=67.7
Q ss_pred CCeEEEECCCCchHHHHHhcC----------CCccccCChhhhhHHHHHHHHH-----cCCCeEEEeecCCCCCCCCCCc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----------DIIAMSLAPNDVHENQIQFALE-----RGIPSTLGVLGTKRLPYPSRSF 280 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----------~V~gvdis~~dis~a~~~~A~~-----rg~~~~~~~~d~~~lp~~~~sF 280 (514)
..+|||||||+|.+++.|+.. .|+++|+.+..+..+..+.... ...++.+..+|......+.+.|
T Consensus 81 g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~~f 160 (223)
T d1r18a_ 81 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPY 160 (223)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCSE
T ss_pred CCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccccce
Confidence 468999999999999888731 4778887776555554332211 1246788888877766666789
Q ss_pred eEEEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 281 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 281 DlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
|.|++.. .++.+++ .+.+.|||||++++..
T Consensus 161 D~Iiv~~-a~~~~p~------~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 161 NAIHVGA-AAPDTPT------ELINQLASGGRLIVPV 190 (223)
T ss_dssp EEEEECS-CBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred eeEEEEe-echhchH------HHHHhcCCCcEEEEEE
Confidence 9999877 4555442 4678999999999854
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.53 E-value=8.7e-08 Score=95.37 Aligned_cols=123 Identities=15% Similarity=0.094 Sum_probs=81.2
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCC----CCCCCCCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR----LPYPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~----lp~~~~sFDlV~~s 286 (514)
..+|||+|||+|.++..++. ..|+++|+++..+..+..+ ++..|. ++.+..+|+.+ ++....+||+|++.
T Consensus 146 g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N-~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~D 224 (324)
T d2as0a2 146 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKEN-AKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 224 (324)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHH-HHHcCCCccceeeechhhhhhHHHHhccCCCCchhcC
Confidence 36899999999999998873 3688999988877666644 444454 46777777543 33456789999974
Q ss_pred ccccc-c-------ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhH-HHHHHHHHhcCc
Q 010274 287 RCRID-W-------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIW-NAMYDLLKSMCW 343 (514)
Q Consensus 287 ~~~l~-~-------~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~-~~l~~ll~~~Gf 343 (514)
.-... . ..+...++..+.++|+|||.|++++...... .+.| +.+.+.+.++|-
T Consensus 225 pP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~----~~~f~~~v~~a~~~~gr 286 (324)
T d2as0a2 225 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVD----LQMFKDMIIAAGAKAGK 286 (324)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSC----HHHHHHHHHHHHHHTTE
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCC----HHHHHHHHHHHHHHcCC
Confidence 31111 0 1123458889999999999999987554211 1123 344555566663
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.44 E-value=2.2e-07 Score=88.83 Aligned_cols=125 Identities=18% Similarity=0.120 Sum_probs=80.1
Q ss_pred CCCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 214 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
...++|||||||+|.++..++++ .++..|+ .+. ++.+ ....++.+..+|..+ +.| ..|++++++.+
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-----p~v-i~~~-~~~~ri~~~~gd~~~-~~p--~~D~~~l~~vL 149 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-----PQV-IENA-PPLSGIEHVGGDMFA-SVP--QGDAMILKAVC 149 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-----HHH-HTTC-CCCTTEEEEECCTTT-CCC--CEEEEEEESSG
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-----hhh-hhcc-CCCCCeEEecCCccc-ccc--cceEEEEehhh
Confidence 34578999999999999999853 3444443 211 1111 112357777777543 344 45999999854
Q ss_pred cccccch-HHHHHHHHhhCCCCeEEEEEe---CCCCCCChhH-------H----------HhHHHHHHHHHhcCcEEEEE
Q 010274 290 IDWLQRD-GILLLELDRLLRPGGYFVYSS---PEAYAHDPEN-------R----------RIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 290 l~~~~d~-~~lL~el~RvLrPGG~lvis~---P~~~~~~~e~-------~----------~~~~~l~~ll~~~Gf~~v~~ 348 (514)
++|.++. ..+|+++++.|+|||.++|.+ |......... . +..+++.++++++||+.++.
T Consensus 150 h~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v 229 (244)
T d1fp1d2 150 HNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQV 229 (244)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEE
Confidence 4443322 568999999999999999866 2221111110 0 01358899999999988764
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.41 E-value=5.9e-07 Score=89.03 Aligned_cols=127 Identities=11% Similarity=0.024 Sum_probs=84.1
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCC----CCCCCCCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKR----LPYPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~----lp~~~~sFDlV~~s 286 (514)
+++|||+.||+|.++..++. ..|+++|+++..+..+..+...... .++.++.+|+.+ +.-..++||+|++.
T Consensus 145 g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~D 224 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIID 224 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEEc
Confidence 46899999999999988763 3689999999888777755544432 246788888633 22245689999974
Q ss_pred cc--------ccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhH-HHHHHHHHhcCcEEE
Q 010274 287 RC--------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIW-NAMYDLLKSMCWKIV 346 (514)
Q Consensus 287 ~~--------~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~-~~l~~ll~~~Gf~~v 346 (514)
-- ......+...++..+.++|+|||.|++++...... . ..| ..+.+.+...+..+.
T Consensus 225 PP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~-~---~~f~~~v~~a~~~~~~~~~ 289 (317)
T d2b78a2 225 PPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT-V---SQFKKQIEKGFGKQKHTYL 289 (317)
T ss_dssp CCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-H---HHHHHHHHHHHTTCCCEEE
T ss_pred ChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCC-H---HHHHHHHHHHHHHcCCeEE
Confidence 21 11112234568999999999999999988643211 1 122 234455566666544
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.40 E-value=4.1e-07 Score=83.71 Aligned_cols=42 Identities=17% Similarity=0.380 Sum_probs=34.6
Q ss_pred CCCCceEEEecccccccccch--HHHHHHHHhhCCCCeEEEEEeC
Q 010274 276 PSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 276 ~~~sFDlV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P 318 (514)
+.+.||+|+|.+ ++.|..+. ..+++.+++.|+|||+|++...
T Consensus 129 ~~~~fDvI~CRN-VLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~s 172 (193)
T d1af7a2 129 VPGPFDAIFCRN-VMIYFDKTTQEDILRRFVPLLKPDGLLFAGHS 172 (193)
T ss_dssp CCCCEEEEEECS-SGGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred CCCCccEEEeeh-hHHhcCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 457899999999 56676655 6799999999999999998543
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.40 E-value=6.8e-07 Score=88.21 Aligned_cols=129 Identities=7% Similarity=0.032 Sum_probs=80.5
Q ss_pred CCCeEEEECCCCchHHHHHh--cCCCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCC----CCCCCCceEEEec
Q 010274 215 NIRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL----PYPSRSFELAHCS 286 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La--~~~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~l----p~~~~sFDlV~~s 286 (514)
+..+|||+.||+|.++.+++ ++.|+++|.+...+..+..+...... .++.+++.|+... ....+.||+|++.
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilD 211 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD 211 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred CCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEEC
Confidence 34689999999999999887 35788998888888777755544432 2467888886432 2234689999973
Q ss_pred cccc-------cc--ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEE
Q 010274 287 RCRI-------DW--LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (514)
Q Consensus 287 ~~~l-------~~--~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~ 345 (514)
--.+ .+ ..+...++..+.++|+|||.+++.+.......... ..+-+.+.+..+|-.+
T Consensus 212 PP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~--~~~~~~~~~~~ag~~v 277 (309)
T d2igta1 212 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYS--MHELMRETMRGAGGVV 277 (309)
T ss_dssp CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHH--HHHHHHHHTTTSCSEE
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHH--HHHHHHHHHHhcCCcc
Confidence 2111 11 12234577788899999997666543222122111 1123345566666544
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.33 E-value=4e-07 Score=82.20 Aligned_cols=131 Identities=18% Similarity=0.247 Sum_probs=77.6
Q ss_pred CceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHH
Q 010274 176 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQI 253 (514)
Q Consensus 176 g~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~ 253 (514)
|..+.+|.+ + .+..+...+.+.+++... + .+..+|||+|||+|.++..++. +.++++|.++..+..+..
T Consensus 11 g~~l~~~~~-~--Rpt~~~v~e~lf~~l~~~---~---~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~ 81 (171)
T d1ws6a1 11 GVALKVPAS-A--RPSPVRLRKALFDYLRLR---Y---PRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKE 81 (171)
T ss_dssp TCEECCCTT-C--CCCCHHHHHHHHHHHHHH---C---TTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHH
T ss_pred CCEeCCCCC-C--CCCcHHHHHHHHHHhhcc---c---cCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhH
Confidence 334445432 1 334444455555555421 1 2335899999999999988763 567788888777665553
Q ss_pred HHHHHcCCCeEEEeecCCC----CCCCCCCceEEEecccccccccchHHHHHHH--HhhCCCCeEEEEEeCC
Q 010274 254 QFALERGIPSTLGVLGTKR----LPYPSRSFELAHCSRCRIDWLQRDGILLLEL--DRLLRPGGYFVYSSPE 319 (514)
Q Consensus 254 ~~A~~rg~~~~~~~~d~~~----lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el--~RvLrPGG~lvis~P~ 319 (514)
+ ++..+....+...+... ......+||+|++.- +|..+....+.++ ..+|+|||++++..+.
T Consensus 82 N-~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP---PY~~~~~~~l~~l~~~~ll~~~g~ivie~~~ 149 (171)
T d1ws6a1 82 N-VRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP---PYAMDLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp H-HHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC---CTTSCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred H-HHhhccccceeeeehhcccccccccCCccceeEEcc---ccccCHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence 3 44456655555444322 223456899999753 1222333344444 3579999999987643
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.30 E-value=6.7e-07 Score=85.14 Aligned_cols=126 Identities=15% Similarity=0.062 Sum_probs=79.4
Q ss_pred CCCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 214 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
...++|||||||+|.++..++++ .++..|+... + +.+. ...++.+...|... +.|. .|+++....+
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-----~~~~-~~~r~~~~~~d~~~-~~P~--ad~~~l~~vl 149 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-----EDAP-SYPGVEHVGGDMFV-SIPK--ADAVFMKWIC 149 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-----TTCC-CCTTEEEEECCTTT-CCCC--CSCEECSSSS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-----hhcc-cCCceEEecccccc-cCCC--cceEEEEEEe
Confidence 34578999999999999999853 4566666432 1 1111 12456777777533 3443 4666666644
Q ss_pred cccccc-hHHHHHHHHhhCCCCeEEEEEeCC---CCCCChhH-------H-----------HhHHHHHHHHHhcCcEEEE
Q 010274 290 IDWLQR-DGILLLELDRLLRPGGYFVYSSPE---AYAHDPEN-------R-----------RIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 290 l~~~~d-~~~lL~el~RvLrPGG~lvis~P~---~~~~~~e~-------~-----------~~~~~l~~ll~~~Gf~~v~ 347 (514)
+.|..+ ...+|+++++.|+|||.+++.+.- ........ . +..++++++++++||+.++
T Consensus 150 h~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vk 229 (243)
T d1kyza2 150 HDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFK 229 (243)
T ss_dssp TTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEE
T ss_pred ecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEE
Confidence 444322 356999999999999999987531 11111000 0 1135788999999998886
Q ss_pred Ee
Q 010274 348 KK 349 (514)
Q Consensus 348 ~~ 349 (514)
..
T Consensus 230 v~ 231 (243)
T d1kyza2 230 VH 231 (243)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.28 E-value=1.1e-06 Score=83.96 Aligned_cols=123 Identities=9% Similarity=0.012 Sum_probs=79.9
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
.++|||||||+|.++..++++ +++..|+ .+ .++.+. ...++.+..+|..+ +.+ .+|++++.+. +|
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-----p~-vi~~~~-~~~rv~~~~gD~f~-~~p--~aD~~~l~~v-LH 149 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-----PQ-VVENLS-GSNNLTYVGGDMFT-SIP--NADAVLLKYI-LH 149 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-----HH-HHTTCC-CBTTEEEEECCTTT-CCC--CCSEEEEESC-GG
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-----HH-HHHhCc-ccCceEEEecCccc-CCC--CCcEEEEEee-cc
Confidence 468999999999999999853 3445544 21 122221 12467888888654 333 5799999985 55
Q ss_pred cccch--HHHHHHHHhhCCCC---eEEEEEeCCC--CCCChhH-----------------HHhHHHHHHHHHhcCcEEEE
Q 010274 292 WLQRD--GILLLELDRLLRPG---GYFVYSSPEA--YAHDPEN-----------------RRIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 292 ~~~d~--~~lL~el~RvLrPG---G~lvis~P~~--~~~~~e~-----------------~~~~~~l~~ll~~~Gf~~v~ 347 (514)
..++. ..+|+++++.|+|| |++++...-. ....... .+..+++.++++++||+.++
T Consensus 150 dw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~ 229 (244)
T d1fp2a2 150 NWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYK 229 (244)
T ss_dssp GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEE
T ss_pred cCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEE
Confidence 44444 46999999999999 7777765311 0011000 01235889999999999887
Q ss_pred Ee
Q 010274 348 KK 349 (514)
Q Consensus 348 ~~ 349 (514)
..
T Consensus 230 i~ 231 (244)
T d1fp2a2 230 IS 231 (244)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.25 E-value=2.6e-07 Score=81.77 Aligned_cols=101 Identities=16% Similarity=0.084 Sum_probs=67.7
Q ss_pred CCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCC-CCCCCCCceEEEeccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LPYPSRSFELAHCSRC 288 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~-lp~~~~sFDlV~~s~~ 288 (514)
.+.+|||+|||+|.++...+. .+|+++|.++..+..... .+...+. ++.+..+|+.. +....++||+|++.-
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~-n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP- 91 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQD-NIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP- 91 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHH-HHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC-
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhh-hhhhcccccchhhhcccccccccccccccceeEech-
Confidence 346899999999999987663 368899988877655553 3333343 36777777544 344567899999642
Q ss_pred ccccc-cchHHHHHHHH--hhCCCCeEEEEEeCC
Q 010274 289 RIDWL-QRDGILLLELD--RLLRPGGYFVYSSPE 319 (514)
Q Consensus 289 ~l~~~-~d~~~lL~el~--RvLrPGG~lvis~P~ 319 (514)
+|. ......+..+. ++|+|||.+++..+.
T Consensus 92 --Py~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~ 123 (152)
T d2esra1 92 --PYAKETIVATIEALAAKNLLSEQVMVVCETDK 123 (152)
T ss_dssp --SSHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred --hhccchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence 222 12234555543 579999999997654
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=1.1e-05 Score=76.97 Aligned_cols=144 Identities=10% Similarity=0.073 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCC--eEEE
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIP--STLG 266 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~--~~~~ 266 (514)
..|...+.+++.... .......++||||||+|.++..|+. ..++++|+++..+.-+..+..+ .+.. +.+.
T Consensus 42 ~~~~~~i~~l~~~~~---~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~-n~l~~~~~~~ 117 (250)
T d2h00a1 42 LNYIHWVEDLIGHQD---SDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQ-NNLSDLIKVV 117 (250)
T ss_dssp HHHHHHHHHHHCCCC---GGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH-TTCTTTEEEE
T ss_pred HHHHHHHHHHhhhhc---cCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHH-hCCCcceeee
Confidence 446667777765322 1123446899999999999988873 5789999998888777755443 3432 3444
Q ss_pred eecCCCC------CCCCCCceEEEeccccccccc----------------------------------chHHHHHHHHhh
Q 010274 267 VLGTKRL------PYPSRSFELAHCSRCRIDWLQ----------------------------------RDGILLLELDRL 306 (514)
Q Consensus 267 ~~d~~~l------p~~~~sFDlV~~s~~~l~~~~----------------------------------d~~~lL~el~Rv 306 (514)
..+.... ...+++||+|+|+--.+.-.. ....++++..+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~ 197 (250)
T d2h00a1 118 KVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQL 197 (250)
T ss_dssp ECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHH
T ss_pred eeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHH
Confidence 3332211 123568999998642221000 012356677778
Q ss_pred CCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEE
Q 010274 307 LRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 307 LrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~ 348 (514)
++..|++..-.... ...+.+.+++++.|+..+..
T Consensus 198 ~~~~g~~t~~ig~~--------~~l~~i~~~L~~~g~~~i~~ 231 (250)
T d2h00a1 198 KKRLRWYSCMLGKK--------CSLAPLKEELRIQGVPKVTY 231 (250)
T ss_dssp GGGBSCEEEEESST--------TSHHHHHHHHHHTTCSEEEE
T ss_pred hhcCcEEEEEecch--------hhHHHHHHHHHHcCCCeEEE
Confidence 88888875432110 12456788889999865543
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.17 E-value=7.2e-07 Score=83.47 Aligned_cols=97 Identities=20% Similarity=0.213 Sum_probs=66.0
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCC-C-----CCCCCceE
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-----YPSRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~l-p-----~~~~sFDl 282 (514)
+++|||||||+|..+..|+. ..++++|+++.....+...+ ...|. .+.+..++..+. + +..++||+
T Consensus 57 pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~-~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 57 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQML-NFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHH-HHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHH-HHcCCCccceeeeccccccccchhhcccccccce
Confidence 46899999999999999884 35788888876665555333 33344 477888775432 2 44568999
Q ss_pred EEecccccccccchHHHHHHHHhhCCCCeEEEE
Q 010274 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 315 (514)
Q Consensus 283 V~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvi 315 (514)
|+.... +........+.+..++|||||.+++
T Consensus 136 ifiD~~--~~~~~~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 136 VFLDHW--KDRYLPDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp EEECSC--GGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred eeeccc--ccccccHHHHHHHhCccCCCcEEEE
Confidence 995531 1111123357888899999998776
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=1.9e-06 Score=80.88 Aligned_cols=97 Identities=14% Similarity=0.096 Sum_probs=69.0
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCC-CC-----CCCCCceE
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-----YPSRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~-lp-----~~~~sFDl 282 (514)
+++|||||||+|..+.+++. ..++++|.++.....++.. ..+.|. .+.+..+++.+ ++ ...++||+
T Consensus 60 ~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~-~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ 138 (219)
T d2avda1 60 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPL-WRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 138 (219)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHH-HHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHH-HHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence 46899999999999999984 4688888888766555533 333343 46777777433 21 23568999
Q ss_pred EEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 283 V~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
|+... .-.....++..+.++|+|||.+++..
T Consensus 139 ifiD~----dk~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 139 AVVDA----DKENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp EEECS----CSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEeC----CHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 99543 23344668899999999999999854
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.12 E-value=5.8e-06 Score=76.32 Aligned_cols=121 Identities=11% Similarity=0.052 Sum_probs=72.2
Q ss_pred CCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
++.+|||+|||+|.++..++. ..|+++|+++..+..+. +.++..+....+...|...++ +.||+|+++-- ..
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~-~N~~~~~~~~~~~~~d~~~~~---~~fD~Vi~nPP-~~ 120 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLI-ENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPP-FG 120 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHTGGGTTSEEEEESCGGGCC---CCCSEEEECCC-CS
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHH-HHHHHcCCCceEEECchhhhC---CcCcEEEEcCc-cc
Confidence 346899999999999887663 36888988887665554 334455677888888876653 67999997642 11
Q ss_pred ccc-c-hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 292 WLQ-R-DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 292 ~~~-d-~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
... . ...++...... ++.++..... ... ...-++.+....||.+.....
T Consensus 121 ~~~~~~d~~~l~~~~~~---~~~v~~ih~~----~~~---~~~~i~~~~~~~g~~i~~~~~ 171 (201)
T d1wy7a1 121 SQRKHADRPFLLKAFEI---SDVVYSIHLA----KPE---VRRFIEKFSWEHGFVVTHRLT 171 (201)
T ss_dssp SSSTTTTHHHHHHHHHH---CSEEEEEEEC----CHH---HHHHHHHHHHHTTEEEEEEEE
T ss_pred cccccccHHHHHHHHhh---cccchhcccc----hHH---HHHHHHHHHhhcCceEEEEEE
Confidence 111 1 12334433333 3333322110 111 123456778889987665443
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.09 E-value=1.7e-06 Score=79.89 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=49.0
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~ 287 (514)
+++|||+|||+|.++..++. ..|+++|+++. +++.|+++..++.+...|..+++ ++||+|+++-
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~-----a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NP 115 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPD-----AIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNP 115 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHH-----HHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECC
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCCcccccccCHH-----HHHHHHHccccccEEEEehhhcC---CcceEEEeCc
Confidence 46899999999998876663 35788876654 44666776677889999987765 6899999763
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.04 E-value=2.9e-06 Score=82.18 Aligned_cols=117 Identities=12% Similarity=0.118 Sum_probs=73.5
Q ss_pred CeEEEECCCCchHHHHHh---cCCCccccCChhhhhHHHHHHHHHcCCC--eEEEeecCCC-CCCCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLL---SHDIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKR-LPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La---~~~V~gvdis~~dis~a~~~~A~~rg~~--~~~~~~d~~~-lp~~~~sFDlV~~s~~~l 290 (514)
.++||+|||+|..+..++ +..|+++|+++..+.-+..+ |+..+.. ..+...+... ++...++||+|+|+---+
T Consensus 112 ~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~N-a~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI 190 (271)
T d1nv8a_ 112 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKN-AERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYV 190 (271)
T ss_dssp CEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHH-HHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCB
T ss_pred cEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHH-HHHcCCCceeEEeecccccccccccCcccEEEEccccc
Confidence 579999999999888877 35789999999888777744 4444443 3444444332 222336899999862111
Q ss_pred c----------cc--------cchHHHH-HHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCc
Q 010274 291 D----------WL--------QRDGILL-LELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 343 (514)
Q Consensus 291 ~----------~~--------~d~~~lL-~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf 343 (514)
. |- .|.-.++ +=+.+.|+|||.+++..... .-+.+.+++++.||
T Consensus 191 ~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~---------Q~~~v~~l~~~~g~ 253 (271)
T d1nv8a_ 191 KSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED---------QVEELKKIVSDTVF 253 (271)
T ss_dssp CGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT---------CHHHHTTTSTTCEE
T ss_pred CcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHH---------HHHHHHHHHHhCCE
Confidence 0 00 0111122 22567899999999865321 12467777888887
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.95 E-value=7.2e-06 Score=74.47 Aligned_cols=131 Identities=13% Similarity=0.051 Sum_probs=79.6
Q ss_pred CceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHH
Q 010274 176 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQ 252 (514)
Q Consensus 176 g~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~ 252 (514)
|..+.+|.+. .-.+..+...+.+.+++... -...+|||++||+|.++...+. ..|+.+|.+...+....
T Consensus 12 g~~l~~~~~~-~~RPt~~~vre~lfn~l~~~-------~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k 83 (183)
T d2fpoa1 12 GRKLPVPDSP-GLRPTTDRVRETLFNWLAPV-------IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLI 83 (183)
T ss_dssp TCEEECCCC-------CHHHHHHHHHHHHHH-------HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHH
T ss_pred CCEecCCCCC-CcCcCcHHHHHHHHhhhhcc-------cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHH
Confidence 4455565543 23344455555666655421 1225899999999999987663 26889999887776665
Q ss_pred HHHHHHcCCCeEEEeecCCC-CCCCCCCceEEEeccccccccc-chHHHHHHHHh--hCCCCeEEEEEe
Q 010274 253 IQFALERGIPSTLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQ-RDGILLLELDR--LLRPGGYFVYSS 317 (514)
Q Consensus 253 ~~~A~~rg~~~~~~~~d~~~-lp~~~~sFDlV~~s~~~l~~~~-d~~~lL~el~R--vLrPGG~lvis~ 317 (514)
.+.......+..+...|+.. +.....+||+|++.- +|.. ....++..+.+ +|+++|.+++..
T Consensus 84 ~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DP---PY~~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 84 KNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDP---PFRRGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp HHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECC---SSSTTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred HHHhhccccceeeeeecccccccccccccCEEEEcC---ccccchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 44433223356666666433 334567899999653 2222 23456666654 699999999854
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.85 E-value=1e-05 Score=74.30 Aligned_cols=97 Identities=19% Similarity=0.179 Sum_probs=66.6
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHc----CCCeEEEeecCCCC-----CCCCCCceE
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRL-----PYPSRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~r----g~~~~~~~~d~~~l-----p~~~~sFDl 282 (514)
...+||++||+|..+..+++ ..|+++|.++. +++.|+++ +.++.+...+...+ .+..++||.
T Consensus 24 ~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~-----~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdg 98 (192)
T d1m6ya2 24 EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSE-----VLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDG 98 (192)
T ss_dssp TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHH-----HHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEE
T ss_pred CCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHH-----HHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcce
Confidence 35899999999999999885 34566655554 44555544 44677777765543 244578999
Q ss_pred EEecccccc--------cccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 283 AHCSRCRID--------WLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 283 V~~s~~~l~--------~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
|+....+-. ........|..+.++|+|||.+++.+
T Consensus 99 Il~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 99 ILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp EEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred eeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 985432211 12223568999999999999999866
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.84 E-value=1.8e-05 Score=77.70 Aligned_cols=121 Identities=12% Similarity=0.116 Sum_probs=76.4
Q ss_pred CCeEEEECCCCchHHHHHhc---------CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLS---------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---------~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s 286 (514)
..+|||.+||+|.+...+.. ..+.|+|+++..+..+..... ..+....+...+..... ...+||+|+++
T Consensus 118 ~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~-~~~~fD~vi~N 195 (328)
T d2f8la1 118 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD-LQRQKMTLLHQDGLANL-LVDPVDVVISD 195 (328)
T ss_dssp EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH-HHTCCCEEEESCTTSCC-CCCCEEEEEEE
T ss_pred CCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHH-Hhhhhhhhhcccccccc-ccccccccccC
Confidence 45799999999999887752 146778887766655543332 33555666666644333 34689999986
Q ss_pred cccccccc-----------------chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcC
Q 010274 287 RCRIDWLQ-----------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC 342 (514)
Q Consensus 287 ~~~l~~~~-----------------d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~G 342 (514)
--...+.. -...++..+.+.|+|||++++..|..+..... ...+++.+.+.+
T Consensus 196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~----~~~lR~~L~~~~ 264 (328)
T d2f8la1 196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSD----FAKVDKFIKKNG 264 (328)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTT----HHHHHHHHHHHE
T ss_pred CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCch----hHHHHHHHHhCC
Confidence 42111100 01237899999999999999999876433222 344555555543
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.81 E-value=1.7e-05 Score=74.69 Aligned_cols=109 Identities=13% Similarity=0.136 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEE
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTL 265 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~ 265 (514)
.++...+.++.. +++|||||+++|.-+.+|+. ..++++|.++.....+. +...+.|. .+.+
T Consensus 48 g~~L~~L~~~~~-----------~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~-~~~~~~g~~~~i~~ 115 (227)
T d1susa1 48 GQFLSMLLKLIN-----------AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGL-PVIKKAGVDHKIDF 115 (227)
T ss_dssp HHHHHHHHHHHT-----------CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHH-HHHHHTTCGGGEEE
T ss_pred HHHHHHHHHhcC-----------CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHH-HHHHHhccccceee
Confidence 456666666554 36899999999999999883 46888988887665554 33334444 3667
Q ss_pred EeecCCC-CC------CCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 266 GVLGTKR-LP------YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 266 ~~~d~~~-lp------~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
..+++.+ ++ ...++||+|+.-. +.......++.+.++|+|||.+++-.
T Consensus 116 ~~g~a~~~L~~l~~~~~~~~~fD~iFiDa----~k~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 116 REGPALPVLDEMIKDEKNHGSYDFIFVDA----DKDNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp EESCHHHHHHHHHHCGGGTTCBSEEEECS----CSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred eehHHHHHHHHHHhccccCCceeEEEecc----chhhhHHHHHHHHhhcCCCcEEEEcc
Confidence 7776432 22 1246899999543 23445678899999999999999853
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.78 E-value=3.1e-05 Score=70.16 Aligned_cols=130 Identities=14% Similarity=0.054 Sum_probs=82.6
Q ss_pred ceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHH
Q 010274 177 EKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQI 253 (514)
Q Consensus 177 ~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~ 253 (514)
..+.+|.+ ....+..+...+.+.+++... ....+|||++||+|.++...+.+ .|+.+|.+...+.....
T Consensus 11 ~~l~~~~~-~~~RPt~~~vrealFn~l~~~-------~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~ 82 (182)
T d2fhpa1 11 RRLKALDG-DNTRPTTDKVKESIFNMIGPY-------FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKE 82 (182)
T ss_dssp CBCCCCCC-CSSCCCCHHHHHHHHHHHCSC-------CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred CEecCCCC-CCcCcCcHHHHHHHHHHHHHh-------cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHH
Confidence 34444443 234555566777777777532 23468999999999999987742 57888888766655553
Q ss_pred HHHHHcCC--CeEEEeecCCCC----CCCCCCceEEEecccccccc-cchHHHHHHHHh--hCCCCeEEEEEeC
Q 010274 254 QFALERGI--PSTLGVLGTKRL----PYPSRSFELAHCSRCRIDWL-QRDGILLLELDR--LLRPGGYFVYSSP 318 (514)
Q Consensus 254 ~~A~~rg~--~~~~~~~d~~~l----p~~~~sFDlV~~s~~~l~~~-~d~~~lL~el~R--vLrPGG~lvis~P 318 (514)
+.. ..+. +..+...|+.+. .-....||+|++.- +|. ......+..+.. +|+++|.+++..+
T Consensus 83 N~~-~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDP---PY~~~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 83 NIA-ITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDP---PYAKQEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp HHH-HHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC---CGGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred Hhh-hhhcccccccccccchhhhhhhcccCCCcceEEech---hhhhhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 333 2233 466777775432 12345799999653 222 334567777654 6999999998653
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.71 E-value=2.2e-05 Score=75.97 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=64.9
Q ss_pred CCCCeEEEECCCCchHHHHHhcCC---CccccCChhhhhHHHHHHHHHc---------------CCCeEEEeecCCCCCC
Q 010274 214 GNIRNVLDVGCGVASFGAYLLSHD---IIAMSLAPNDVHENQIQFALER---------------GIPSTLGVLGTKRLPY 275 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~~---V~gvdis~~dis~a~~~~A~~r---------------g~~~~~~~~d~~~lp~ 275 (514)
.++++||-||+|.|..+..++... |+.+|+++ ..++.|++- ..++.++..|+...--
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~-----~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~ 145 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDE-----DVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK 145 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCH-----HHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCH-----HHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh
Confidence 345799999999999999888643 44555544 444555432 2456777777543211
Q ss_pred CCCCceEEEecccccccccc----hHHHHHHHHhhCCCCeEEEEEeC
Q 010274 276 PSRSFELAHCSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 276 ~~~sFDlV~~s~~~l~~~~d----~~~lL~el~RvLrPGG~lvis~P 318 (514)
.+++||+|++-. .-..... ..++++.+.+.|+|||.++.-..
T Consensus 146 ~~~~yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~ 191 (276)
T d1mjfa_ 146 NNRGFDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 191 (276)
T ss_dssp HCCCEEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCCCCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEecC
Confidence 347899999633 1221111 15699999999999999997553
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.67 E-value=3.7e-05 Score=70.35 Aligned_cols=112 Identities=16% Similarity=0.153 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeec
Q 010274 195 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLG 269 (514)
Q Consensus 195 y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d 269 (514)
..+.+.+++.. .+..+|||.|||+|.|...+.+ ..+.++|+++..... .....+...+
T Consensus 7 i~~~m~~l~~~--------~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~---------~~~~~~~~~~ 69 (223)
T d2ih2a1 7 VVDFMVSLAEA--------PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL---------PPWAEGILAD 69 (223)
T ss_dssp HHHHHHHHCCC--------CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC---------CTTEEEEESC
T ss_pred HHHHHHHhcCC--------CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh---------cccceeeeee
Confidence 34455565542 2346899999999999887763 246777777654321 1234455555
Q ss_pred CCCCCCCCCCceEEEecccccccc---------------------------cc-hHHHHHHHHhhCCCCeEEEEEeCCCC
Q 010274 270 TKRLPYPSRSFELAHCSRCRIDWL---------------------------QR-DGILLLELDRLLRPGGYFVYSSPEAY 321 (514)
Q Consensus 270 ~~~lp~~~~sFDlV~~s~~~l~~~---------------------------~d-~~~lL~el~RvLrPGG~lvis~P~~~ 321 (514)
..... ....||+|+++.....+. .+ ...++..+.+.|+|||++++..|..+
T Consensus 70 ~~~~~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~ 148 (223)
T d2ih2a1 70 FLLWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATW 148 (223)
T ss_dssp GGGCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred hhccc-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeee
Confidence 44443 346899999853211100 00 13467889999999999999998765
Q ss_pred CCC
Q 010274 322 AHD 324 (514)
Q Consensus 322 ~~~ 324 (514)
...
T Consensus 149 l~~ 151 (223)
T d2ih2a1 149 LVL 151 (223)
T ss_dssp GTC
T ss_pred ccC
Confidence 443
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.49 E-value=0.00023 Score=68.99 Aligned_cols=140 Identities=15% Similarity=0.093 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHH----HcCCCeE
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFAL----ERGIPST 264 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~----~rg~~~~ 264 (514)
..|.+.+....-.. -.++++||=||-|.|..+..++.. .++.+|+++.-+..+..-+.. ....++.
T Consensus 64 ~~Yhe~l~h~~~~~------~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~ 137 (290)
T d1xj5a_ 64 CAYQEMITHLPLCS------IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVN 137 (290)
T ss_dssp HHHHHHHHHHHHTT------SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEE
T ss_pred hHHHHHHhhHHHhh------CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcE
Confidence 34555555443221 134579999999999999998853 456676666544333221111 1135677
Q ss_pred EEeecCCC-C-CCCCCCceEEEeccccccccc----chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHH
Q 010274 265 LGVLGTKR-L-PYPSRSFELAHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLL 338 (514)
Q Consensus 265 ~~~~d~~~-l-p~~~~sFDlV~~s~~~l~~~~----d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll 338 (514)
++..|... + ...+++||+|+.-. .-.... -..++++.+.+.|+|||.++.-....+.. . ..+..+.+.+
T Consensus 138 i~~~Da~~~l~~~~~~~yDvIi~D~-~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~-~---~~~~~i~~~l 212 (290)
T d1xj5a_ 138 LVIGDGVAFLKNAAEGSYDAVIVDS-SDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLH-M---DIIEDIVSNC 212 (290)
T ss_dssp EEESCHHHHHHTSCTTCEEEEEECC-CCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTC-H---HHHHHHHHHH
T ss_pred EEEccHHHHHhhccccCccEEEEcC-CCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHH-H---HHHHHHHhhh
Confidence 77777432 2 23456899999632 111111 12669999999999999999977654422 2 2234555555
Q ss_pred HhcCc
Q 010274 339 KSMCW 343 (514)
Q Consensus 339 ~~~Gf 343 (514)
++...
T Consensus 213 ~~vF~ 217 (290)
T d1xj5a_ 213 REIFK 217 (290)
T ss_dssp HHHCS
T ss_pred hhhcc
Confidence 66544
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.47 E-value=9.8e-05 Score=72.48 Aligned_cols=124 Identities=11% Similarity=0.064 Sum_probs=75.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHH-----cCCCeEEEeecCCCC-CCCCCCceEEE
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE-----RGIPSTLGVLGTKRL-PYPSRSFELAH 284 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~-----rg~~~~~~~~d~~~l-p~~~~sFDlV~ 284 (514)
.+++||.||.|.|..+..++.. +|+.+|+++.-+..+...+... ...++.++..|.... .-.+++||+|+
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence 4579999999999999988743 4667766665543333222111 134577777775432 22346899999
Q ss_pred ecccccccc-------cchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcC
Q 010274 285 CSRCRIDWL-------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC 342 (514)
Q Consensus 285 ~s~~~l~~~-------~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~G 342 (514)
+-. .-.+. ....++++.+.+.|+|||.+++-....+.... +....+.+.+++.-
T Consensus 157 ~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~---~~~~~i~~tl~~~F 217 (312)
T d1uira_ 157 IDL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHH---RVHPVVHRTVREAF 217 (312)
T ss_dssp EEC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC------CHHHHHHHHHHTTC
T ss_pred EeC-CCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchH---HHHHHHHHHHHHhC
Confidence 532 11111 11256999999999999999975433221111 12345566666663
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.47 E-value=0.00036 Score=65.74 Aligned_cols=145 Identities=10% Similarity=0.093 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHh----cCCCccccCChhhhhHHHHHHHHHcCC-CeEEE
Q 010274 192 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGI-PSTLG 266 (514)
Q Consensus 192 a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La----~~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~ 266 (514)
.+-+.+++.+.+.... .+ ......+++|||+|.|.=+..|+ +.+++-+|-...-. ....+...+-+. ++.+.
T Consensus 49 ~~i~~rHi~DSl~~~~-~~-~~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~-~FL~~v~~~L~L~n~~i~ 125 (239)
T d1xdza_ 49 KEVYLKHFYDSITAAF-YV-DFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRI-TFLEKLSEALQLENTTFC 125 (239)
T ss_dssp HHHHHHTHHHHHGGGG-TS-CGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHTCSSEEEE
T ss_pred HHHHHHhccchhhhhh-hh-cccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHH-HHHHHHHHHhCCCCcEEE
Confidence 3445566665553221 11 11234589999999997777666 34455555543322 111122334455 45555
Q ss_pred eecCCCCCC---CCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCc
Q 010274 267 VLGTKRLPY---PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 343 (514)
Q Consensus 267 ~~d~~~lp~---~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf 343 (514)
...++.+.. ..++||+|+|.. +.....++.-....+++||.+++.--..+ ....++.++.++..|+
T Consensus 126 ~~R~E~~~~~~~~~~~~D~v~sRA-----va~l~~ll~~~~~~l~~~g~~i~~KG~~~------~~El~~a~~~~~~~~~ 194 (239)
T d1xdza_ 126 HDRAETFGQRKDVRESYDIVTARA-----VARLSVLSELCLPLVKKNGLFVALKAASA------EEELNAGKKAITTLGG 194 (239)
T ss_dssp ESCHHHHTTCTTTTTCEEEEEEEC-----CSCHHHHHHHHGGGEEEEEEEEEEECC-C------HHHHHHHHHHHHHTTE
T ss_pred eehhhhccccccccccceEEEEhh-----hhCHHHHHHHHhhhcccCCEEEEECCCCh------HHHHHHHHHHHHHcCC
Confidence 554554432 135899999543 34567799999999999999997442221 2234566677888899
Q ss_pred EEEEEec
Q 010274 344 KIVSKKD 350 (514)
Q Consensus 344 ~~v~~~~ 350 (514)
+......
T Consensus 195 ~~~~v~~ 201 (239)
T d1xdza_ 195 ELENIHS 201 (239)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8765443
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.45 E-value=0.00072 Score=66.63 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=93.6
Q ss_pred ceeccCceeecCCCCCCCCcc---HHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc--CCCccccCCh
Q 010274 171 WMVVNGEKINFPGGGTHFHDG---ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAP 245 (514)
Q Consensus 171 Wv~~~g~~~~Fpggg~~F~~g---a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~ 245 (514)
|....|-.+.++. +..|+.. ++...+.+.+.+.. .+..+|||+-||+|.|+..|+. ..|+++|+++
T Consensus 174 ~~~~~g~~~~i~p-~sFfQ~N~~~~e~l~~~v~~~~~~--------~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~ 244 (358)
T d1uwva2 174 WYDSNGLRLTFSP-RDFIQVNAGVNQKMVARALEWLDV--------QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVP 244 (358)
T ss_dssp EEEETTEEEECCS-SSCCCSBHHHHHHHHHHHHHHHTC--------CTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCH
T ss_pred EEecCCEEEEECC-chhhccchhhhhHHHHHHHHhhcc--------CCCceEEEecccccccchhccccccEEEeccCcH
Confidence 4334444445532 3344433 33444445555542 2346899999999999999986 4799999999
Q ss_pred hhhhHHHHHHHHHcCCCeEEEeecCCCC-C---CCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCC
Q 010274 246 NDVHENQIQFALERGIPSTLGVLGTKRL-P---YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY 321 (514)
Q Consensus 246 ~dis~a~~~~A~~rg~~~~~~~~d~~~l-p---~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~ 321 (514)
..+..+..+.......++.+..++.... + .....||+|+..--.-. ....+..+.+. +|.-.+++|-.+.
T Consensus 245 ~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G----~~~~~~~l~~~-~~~~ivYVSCnp~- 318 (358)
T d1uwva2 245 ALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG----AAGVMQQIIKL-EPIRIVYVSCNPA- 318 (358)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTC----CHHHHHHHHHH-CCSEEEEEESCHH-
T ss_pred HHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeCCCCcc----HHHHHHHHHHc-CCCEEEEEeCCHH-
Confidence 8887776444433334678887775442 2 23467999985431111 13466666654 7777777764221
Q ss_pred CCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 322 AHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 322 ~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
. .-+++.. +.+.||++......
T Consensus 319 -----T--laRDl~~-l~~~gy~l~~i~~~ 340 (358)
T d1uwva2 319 -----T--LARDSEA-LLKAGYTIARLAML 340 (358)
T ss_dssp -----H--HHHHHHH-HHHTTCEEEEEEEE
T ss_pred -----H--HHHHHHH-HHHCCCeEeEEEEE
Confidence 1 1134433 45679988766554
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.45 E-value=0.0001 Score=71.75 Aligned_cols=107 Identities=11% Similarity=0.067 Sum_probs=69.2
Q ss_pred CCCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEeecCCC-CCCCCCCceEEE
Q 010274 214 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKR-LPYPSRSFELAH 284 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~----rg~~~~~~~~d~~~-lp~~~~sFDlV~ 284 (514)
..+++||-||.|.|..+..++.. .|+.+|+++..+..+..-+... ...++.+...|+.. +.-.+++||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 34579999999999999998853 4667777765554333222111 13467777777432 222346899999
Q ss_pred ecccccccc-----cchHHHHHHHHhhCCCCeEEEEEeCCCC
Q 010274 285 CSRCRIDWL-----QRDGILLLELDRLLRPGGYFVYSSPEAY 321 (514)
Q Consensus 285 ~s~~~l~~~-----~d~~~lL~el~RvLrPGG~lvis~P~~~ 321 (514)
+-. .-... ....++++.+.+.|+|||.++.-....+
T Consensus 168 ~D~-~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~ 208 (295)
T d1inla_ 168 IDS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPF 208 (295)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred EcC-CCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChh
Confidence 643 12111 1126799999999999999998765543
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.23 E-value=0.0004 Score=67.92 Aligned_cols=125 Identities=19% Similarity=0.125 Sum_probs=78.3
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEe----
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHC---- 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~---- 285 (514)
+.+|||+.||.|.=+..++. ..+++.|++..-+.... +..+..+. ++.+...|...++..+..||.|++
T Consensus 117 g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~-~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDaPC 195 (313)
T d1ixka_ 117 GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETR-LNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPC 195 (313)
T ss_dssp TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCT
T ss_pred cceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHH-HHHHHHHhhccccccccccccccccccccEEEEcccc
Confidence 35899999999986666652 34677877765444333 22333343 455555666666655678999996
Q ss_pred cc-ccccccc---------c-------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 286 SR-CRIDWLQ---------R-------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 286 s~-~~l~~~~---------d-------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
|. .++...+ + ...+|..+.+.|||||+++.++-.... .|+ -..+..++++.+++.+
T Consensus 196 Sg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~--eEN---E~VV~~~L~~~~~~~~ 268 (313)
T d1ixka_ 196 TGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP--EEN---EFVIQWALDNFDVELL 268 (313)
T ss_dssp TSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG--GGT---HHHHHHHHHHSSEEEE
T ss_pred ccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh--HhH---HHHHHHHHhcCCCEEe
Confidence 21 1111111 1 133888999999999999999876542 222 2355667788777665
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=0.00035 Score=67.50 Aligned_cols=127 Identities=13% Similarity=0.134 Sum_probs=75.4
Q ss_pred CCCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHH----HcCCCeEEEeecCCC-CCCCCCCceEEE
Q 010274 214 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFAL----ERGIPSTLGVLGTKR-LPYPSRSFELAH 284 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~----~rg~~~~~~~~d~~~-lp~~~~sFDlV~ 284 (514)
..+++||-||-|.|..+..+... .|+.+|+++.-+..+..-+.. ....++.++..|+.. +.-..++||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 34579999999999999999853 455666665544333221111 113567778777433 222346899999
Q ss_pred eccccccccc----chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 285 CSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 285 ~s~~~l~~~~----d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
+-. .-.... ...++++.+.+.|+|||.+++-....+.. . .....+.+.+++. |..+
T Consensus 157 ~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~-~---~~~~~~~~tl~~~-F~~v 216 (285)
T d2o07a1 157 TDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLH-L---DLIKEMRQFCQSL-FPVV 216 (285)
T ss_dssp EEC-C-----------CHHHHHHHHHEEEEEEEEEEEECTTTC-H---HHHHHHHHHHHHH-CSEE
T ss_pred EcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhh-H---HHHHHHHHHHHhc-CCee
Confidence 643 111111 11458999999999999999866443322 1 2244455555554 4443
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=0.00043 Score=63.81 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=64.4
Q ss_pred CeEEEECCCCchHHHHHh----cCCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 217 RNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La----~~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
.++||||+|.|.=|..|+ +.+++.+|....-+. ...+.+++-+. ++.+....++.+. .+.+||+|+| ++
T Consensus 67 ~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~-FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~s-RA--- 140 (207)
T d1jsxa_ 67 ERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVR-FLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVIS-RA--- 140 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHH-HHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEEC-SC---
T ss_pred CceeeeeccCCceeeehhhhcccceEEEEecchHHHH-HHHHHHHHcCCcceeeeccchhhhc-cccccceehh-hh---
Confidence 479999999997777666 345666766554332 22233445565 5677766677664 3468999985 43
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+.+...++.-+...+++||.+++--
T Consensus 141 -~~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 141 -FASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp -SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred -hcCHHHHHHHHHHhcCCCcEEEEEC
Confidence 2445678899999999999999743
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.19 E-value=0.00016 Score=70.78 Aligned_cols=117 Identities=12% Similarity=0.061 Sum_probs=71.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHc---------CCCeEEEeecCCCC-CCCCCCc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL-PYPSRSF 280 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~r---------g~~~~~~~~d~~~l-p~~~~sF 280 (514)
.+++||-||.|.|..+..++.. .|+.+|+++. .++.+++- ..++.++..|.... .-..++|
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~-----Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~y 180 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEM-----VIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEF 180 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHH-----HHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHH-----HHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCC
Confidence 4578999999999999999853 3556655554 44555443 23566776664321 2235789
Q ss_pred eEEEeccccccccc----chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc
Q 010274 281 ELAHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 341 (514)
Q Consensus 281 DlV~~s~~~l~~~~----d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~ 341 (514)
|+|++-. .-...+ ....+++.+.+.|+|||.++.-....+.. .+ ....+.+.+++.
T Consensus 181 DvII~D~-~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~-~~---~~~~i~~~l~~v 240 (312)
T d2b2ca1 181 DVIITDS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLH-LP---LIAHLVAFNRKI 240 (312)
T ss_dssp EEEEECC-C-------------HHHHHHHHEEEEEEEEEECCCTTTC-HH---HHHHHHHHHHHH
T ss_pred CEEEEcC-CCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHh-HH---HHHHHHHHhhhc
Confidence 9999643 121111 11558999999999999999876554422 21 233444555554
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.18 E-value=0.00029 Score=67.75 Aligned_cols=123 Identities=12% Similarity=0.105 Sum_probs=76.9
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEeecCCC-CCCCCCCceEEEe
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKR-LPYPSRSFELAHC 285 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~----rg~~~~~~~~d~~~-lp~~~~sFDlV~~ 285 (514)
.+++||-||-|.|..+..++.. .|+.+|+++.-+..+..-+... ...++.++..|... +.-.+++||+|+.
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~ 154 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence 4578999999999999998853 4666777665544333222111 12456777777533 2234578999996
Q ss_pred cccccccc----cchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcC
Q 010274 286 SRCRIDWL----QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC 342 (514)
Q Consensus 286 s~~~l~~~----~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~G 342 (514)
-. .-... .-..++++.+.+.|+|||.++.-....+.. . +....+.+.+++..
T Consensus 155 D~-~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~-~---~~~~~i~~tl~~~F 210 (274)
T d1iy9a_ 155 DS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFT-P---ELITNVQRDVKEIF 210 (274)
T ss_dssp SC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTC-H---HHHHHHHHHHHTTC
T ss_pred cC-CCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCcccc-H---HHHHHHHHhhhhhc
Confidence 42 11111 113569999999999999999876544322 2 22345556666653
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.05 E-value=0.00015 Score=68.60 Aligned_cols=79 Identities=13% Similarity=0.217 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHc---CCCeEEEeec
Q 010274 195 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER---GIPSTLGVLG 269 (514)
Q Consensus 195 y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~r---g~~~~~~~~d 269 (514)
.++.+.+.+... ...+|||||||+|.++..|++ ..|+++|++...+. .++++ ..++.+..+|
T Consensus 17 ii~kIv~~~~~~--------~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~-----~l~~~~~~~~n~~ii~~D 83 (245)
T d1yuba_ 17 VLNQIIKQLNLK--------ETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFN-----LSSEKLKLNTRVTLIHQD 83 (245)
T ss_dssp THHHHHHHCCCC--------SSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSS-----SSSCTTTTCSEEEECCSC
T ss_pred HHHHHHHhcCCC--------CCCeEEEECCCccHHHHHHHhhcCceeEeeecccchh-----hhhhhhhhccchhhhhhh
Confidence 344566655432 335899999999999999984 56889988876553 22333 2457888899
Q ss_pred CCCCCCCCCCceEEEec
Q 010274 270 TKRLPYPSRSFELAHCS 286 (514)
Q Consensus 270 ~~~lp~~~~sFDlV~~s 286 (514)
+.+++++...++.|+++
T Consensus 84 ~l~~~~~~~~~~~vv~N 100 (245)
T d1yuba_ 84 ILQFQFPNKQRYKIVGN 100 (245)
T ss_dssp CTTTTCCCSSEEEEEEE
T ss_pred hhccccccceeeeEeee
Confidence 98888887777777744
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.00079 Score=60.55 Aligned_cols=90 Identities=19% Similarity=0.194 Sum_probs=59.2
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC--------CCCCCceE
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp--------~~~~sFDl 282 (514)
..+||||||+.|.|+.++.+ ..++++|+.+.+. .....+..+|..... .....||+
T Consensus 23 ~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~-----------i~~~~~~~~d~~~~~~~~~~~~~~~~~~~Dl 91 (180)
T d1ej0a_ 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP-----------IVGVDFLQGDFRDELVMKALLERVGDSKVQV 91 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC-----------CTTEEEEESCTTSHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEeccCCcceEEEEeeccccceEEEeecccccc-----------cCCceEeecccccchhhhhhhhhccCcceeE
Confidence 46899999999999998874 3577787765421 234556666643321 23467999
Q ss_pred EEeccccccccc----ch-------HHHHHHHHhhCCCCeEEEEEe
Q 010274 283 AHCSRCRIDWLQ----RD-------GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 283 V~~s~~~l~~~~----d~-------~~lL~el~RvLrPGG~lvis~ 317 (514)
|+|-. +..-.. |. ...+.-+.++||+||.|++-.
T Consensus 92 VlSD~-ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 92 VMSDM-APNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp EEECC-CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEecc-cchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence 99754 222211 11 225666789999999999855
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.02 E-value=0.0011 Score=62.17 Aligned_cols=67 Identities=10% Similarity=0.132 Sum_probs=48.1
Q ss_pred CCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHc---CCCeEEEeecCCCCCCCCCCceEEEecc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~r---g~~~~~~~~d~~~lp~~~~sFDlV~~s~ 287 (514)
+..+|||||||+|.++..|++ ..|+++++++... +..+++ ..++.++.+|+..++++......|+ ++
T Consensus 21 ~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~-----~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~~vv-~N 92 (235)
T d1qama_ 21 EHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLC-----KTTENKLVDHDNFQVLNKDILQFKFPKNQSYKIF-GN 92 (235)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHH-----HHHHHHTTTCCSEEEECCCGGGCCCCSSCCCEEE-EE
T ss_pred CCCeEEEECCCchHHHHHHHhCcCceEEEeeccchH-----HHHHHHhhcccchhhhhhhhhhccccccccceee-ee
Confidence 346899999999999999985 4678887766443 444443 3468899999988887654444455 44
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.0019 Score=61.96 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=76.3
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC--CCCCCceEEEe----
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHC---- 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp--~~~~sFDlV~~---- 285 (514)
..+|||+.+|.|.=+..|++ ..|++.|++..-+.... +..+..|.+......+..... ...+.||.|++
T Consensus 103 g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~-~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaPC 181 (284)
T d1sqga2 103 GEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY-DNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPC 181 (284)
T ss_dssp TCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHH-HHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCC
T ss_pred cceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHh-hhhhcccccceeeeccccccchhcccccccEEEEeccc
Confidence 46899999999987777663 35788888876654433 445555766555444332221 23468999996
Q ss_pred cc-cccccccc----------------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHh-cCcEE
Q 010274 286 SR-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS-MCWKI 345 (514)
Q Consensus 286 s~-~~l~~~~d----------------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~-~Gf~~ 345 (514)
|. .++...++ ...+|..+.+.|||||++++++-... ..|+ -..++.++++ .+|++
T Consensus 182 Sg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~--~~EN---E~vv~~~l~~~~~~~~ 254 (284)
T d1sqga2 182 SATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL--PEEN---SLQIKAFLQRTADAEL 254 (284)
T ss_dssp CCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC--GGGT---HHHHHHHHHHCTTCEE
T ss_pred cccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc--hhhC---HHHHHHHHHhCCCcEE
Confidence 21 11211111 13488999999999999999986643 2222 2345556665 34443
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=96.73 E-value=0.0011 Score=59.49 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=61.2
Q ss_pred CeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC---CeEEEeecC---CCCCCCCCCceEEEecc
Q 010274 217 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGT---KRLPYPSRSFELAHCSR 287 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~---~~~~~~~d~---~~lp~~~~sFDlV~~s~ 287 (514)
.+|||+-||||.++...+.+ .|+.+|.+...+.... +.++..+. ...+...|. .........||+|++--
T Consensus 45 ~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik-~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDP 123 (183)
T d2ifta1 45 SECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLK-KNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 123 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHH-HHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred ceEeecccCccceeeeeeeecceeeEEeecccchhhhHh-hHHhhhcccccccccccccccccccccccCCcccEEEech
Confidence 48999999999999998843 5777877776553333 22333232 234444442 22233445799999643
Q ss_pred cccccccc-hHHHHHHHHh--hCCCCeEEEEEeC
Q 010274 288 CRIDWLQR-DGILLLELDR--LLRPGGYFVYSSP 318 (514)
Q Consensus 288 ~~l~~~~d-~~~lL~el~R--vLrPGG~lvis~P 318 (514)
+|..+ ....+..+.. +|+++|.+++..+
T Consensus 124 ---PY~~~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 124 ---PFHFNLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp ---CSSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ---hHhhhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 23222 3456666654 7999999999664
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.72 E-value=0.00095 Score=62.47 Aligned_cols=95 Identities=15% Similarity=0.141 Sum_probs=58.6
Q ss_pred CCeEEEECCCCchHHHHHh--------cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC----CCCCCceEE
Q 010274 216 IRNVLDVGCGVASFGAYLL--------SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP----YPSRSFELA 283 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La--------~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp----~~~~sFDlV 283 (514)
+++|||||++.|.-+..++ ...++++|+.+.... .+.....++.+.++|..... +....||+|
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~-----~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlI 155 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQ-----IPASDMENITLHQGDCSDLTTFEHLREMAHPLI 155 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCC-----CCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhh-----hhhccccceeeeecccccHHHHHHHHhcCCCEE
Confidence 4689999999997666554 246888888653321 11222356778888754332 234568888
Q ss_pred EecccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 284 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 284 ~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
+.-. .+++ .....-+ +...+|++||++++.+.
T Consensus 156 fID~-~H~~-~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 156 FIDN-AHAN-TFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp EEES-SCSS-HHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred EEcC-Ccch-HHHHHHH-HHhcccCcCCEEEEEcC
Confidence 7543 2222 2111223 46789999999999653
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.52 E-value=0.0042 Score=62.70 Aligned_cols=118 Identities=15% Similarity=0.089 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc-----------------CCCccccCChhhhhHHHHHHH
Q 010274 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----------------HDIIAMSLAPNDVHENQIQFA 256 (514)
Q Consensus 194 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-----------------~~V~gvdis~~dis~a~~~~A 256 (514)
...+.+.+++.. ....+|+|-.||+|.|...+.+ ..+.|.|+++....-+..+..
T Consensus 149 ~Iv~~mv~ll~~--------~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~ 220 (425)
T d2okca1 149 PLIQAMVDCINP--------QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 220 (425)
T ss_dssp HHHHHHHHHHCC--------CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred hhhHhhheeccC--------cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhh
Confidence 455566666642 2235799999999999877642 246688887776665555544
Q ss_pred HHcCC--CeEEEeecCCCCCCCCCCceEEEeccccc-cc--------------cc-chHHHHHHHHhhCCCCeEEEEEeC
Q 010274 257 LERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI-DW--------------LQ-RDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 257 ~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l-~~--------------~~-d~~~lL~el~RvLrPGG~lvis~P 318 (514)
..... ...+...|.... .+...||+|+++--.- .+ .. ....++..+...|++||++++..|
T Consensus 221 l~g~~~~~~~i~~~d~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 221 LHGIGTDRSPIVCEDSLEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp HTTCCSSCCSEEECCTTTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcCCccccceeecCchhhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 43211 233444554433 2456899999853110 00 00 113489999999999999999988
Q ss_pred CC
Q 010274 319 EA 320 (514)
Q Consensus 319 ~~ 320 (514)
..
T Consensus 300 ~~ 301 (425)
T d2okca1 300 DN 301 (425)
T ss_dssp HH
T ss_pred hH
Confidence 53
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.02 E-value=0.016 Score=54.36 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=61.1
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCe-EEEee-cCCCCCCCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPS-TLGVL-GTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~-~~~~~-d~~~lp~~~~sFDlV~~s~~~l 290 (514)
.+|+|+|||.|.++.+++.. .|.+.++-. +.++.-+.. ...+-++ .+... ++.. .+....|+|+|-.+ -
T Consensus 68 ~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~-d~~e~P~~~-~~~~~ni~~~~~~~dv~~--l~~~~~D~vlcDm~-e 142 (257)
T d2p41a1 68 GKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGG-PGHEEPIPM-STYGWNLVRLQSGVDVFF--IPPERCDTLLCDIG-E 142 (257)
T ss_dssp EEEEEETCTTSHHHHHHHTSTTEEEEEEECCCS-TTSCCCCCC-CSTTGGGEEEECSCCTTT--SCCCCCSEEEECCC-C
T ss_pred CeEEEecCCCChHHHHHHhhcCCCceeEEEecC-ccccCCccc-cccccccccchhhhhHHh--cCCCcCCEEEeeCC-C
Confidence 47999999999999999843 234444421 211100000 0001111 22111 1222 34578999998752 2
Q ss_pred ccccch-------HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcC
Q 010274 291 DWLQRD-------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC 342 (514)
Q Consensus 291 ~~~~d~-------~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~G 342 (514)
. ..++ -.+|.-+.+.|+|||.|++-.-..| .++ ..+.++.+-...|
T Consensus 143 s-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py--~~~---v~e~le~lq~~fg 195 (257)
T d2p41a1 143 S-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY--MSS---VIEKMEALQRKHG 195 (257)
T ss_dssp C-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC--SHH---HHHHHHHHHHHHC
T ss_pred C-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCC--ChH---HHHHHHHHHHHhC
Confidence 1 2222 2367777899999999998654433 222 2344445555544
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.85 E-value=0.016 Score=55.48 Aligned_cols=119 Identities=14% Similarity=0.040 Sum_probs=68.3
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCC---CCCceEEEe-
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYP---SRSFELAHC- 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~---~~sFDlV~~- 285 (514)
+.+|||+.||.|.=+.+|+. ..|++.|+++.-+.... +.++..|. ++.+...|...+... .+.||.|++
T Consensus 95 g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~-~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~D 173 (293)
T d2b9ea1 95 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA-TLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLD 173 (293)
T ss_dssp TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEEC
T ss_pred cceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHH-HHHHhcCccceeeeehhhhhhcccccccceeeEEeec
Confidence 45899999999987777763 35778888765553333 34444455 456666665554322 257999996
Q ss_pred ---cc-ccccccc--------c----------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc
Q 010274 286 ---SR-CRIDWLQ--------R----------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 341 (514)
Q Consensus 286 ---s~-~~l~~~~--------d----------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~ 341 (514)
|. .++...+ + ...++..+. .|+|||+|+.++-.... .|+ -..+..++++.
T Consensus 174 aPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~--~EN---e~vV~~~L~~~ 245 (293)
T d2b9ea1 174 PSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQ--EEN---EDVVRDALQQN 245 (293)
T ss_dssp CCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCG--GGT---HHHHHHHHTTS
T ss_pred CcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCCh--hHh---HHHHHHHHHhC
Confidence 21 1111000 0 022444444 47999999998866432 222 23455666654
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.70 E-value=0.0062 Score=60.69 Aligned_cols=119 Identities=13% Similarity=0.008 Sum_probs=72.8
Q ss_pred CCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHh-c---CCCccccCChhhhhHHHHHHHHHcCCC
Q 010274 187 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL-S---HDIIAMSLAPNDVHENQIQFALERGIP 262 (514)
Q Consensus 187 ~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La-~---~~V~gvdis~~dis~a~~~~A~~rg~~ 262 (514)
.|-+...+..+.+.-++... -++.+|||..||+|..+...+ + ..|+..|+++..+.....+.... +..
T Consensus 24 vFYNp~q~~NRDlsvl~~~~-------~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN-~~~ 95 (375)
T d2dula1 24 VFYNPRMALNRDIVVVLLNI-------LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLN-FDG 95 (375)
T ss_dssp CCCCGGGHHHHHHHHHHHHH-------HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHH-CCS
T ss_pred cccCHHHhhhhHHHHHHHHH-------hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhc-Ccc
Confidence 46556666666543222110 123589999999999999654 3 25677888887765555443333 221
Q ss_pred ----------------eEEEeecCCCCCC-CCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 263 ----------------STLGVLGTKRLPY-PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 263 ----------------~~~~~~d~~~lp~-~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
+.+...|+..+.. ....||+|..-- ...+..+|..+.+.++.||.|.++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~~~~fDvIDiDP-----fGs~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 96 ELRESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDP-----FGSPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp CCEECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEECC-----SSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccccccccccccceeEeehhhhhhhhHhhcCcCCcccCCC-----CCCcHHHHHHHHHHhccCCEEEEEec
Confidence 2223333222211 235799998332 34556799999999999999999875
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.011 Score=61.19 Aligned_cols=118 Identities=16% Similarity=0.108 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc----------------------CCCccccCChhhhhHH
Q 010274 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----------------------HDIIAMSLAPNDVHEN 251 (514)
Q Consensus 194 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~----------------------~~V~gvdis~~dis~a 251 (514)
...+.+.+++.. ....+|+|-.||+|.|.....+ ..+.|.|+.+....-+
T Consensus 151 ~Iv~~mv~ll~~--------~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la 222 (524)
T d2ar0a1 151 PLIKTIIHLLKP--------QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 222 (524)
T ss_dssp HHHHHHHHHHCC--------CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred chhHhhhhcccC--------ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHH
Confidence 345666676652 2235799999999999876542 1345667666555444
Q ss_pred HHHHHHHcCCCeE------EEeecCCCCC-CCCCCceEEEeccccc-cc-----------ccc-hHHHHHHHHhhCCCCe
Q 010274 252 QIQFALERGIPST------LGVLGTKRLP-YPSRSFELAHCSRCRI-DW-----------LQR-DGILLLELDRLLRPGG 311 (514)
Q Consensus 252 ~~~~A~~rg~~~~------~~~~d~~~lp-~~~~sFDlV~~s~~~l-~~-----------~~d-~~~lL~el~RvLrPGG 311 (514)
..+.... +.... +...+....+ .....||+|+++--.- .+ ..+ .-.++..+.+.|++||
T Consensus 223 ~~nl~l~-~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gG 301 (524)
T d2ar0a1 223 LMNCLLH-DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGG 301 (524)
T ss_dssp HHHHHTT-TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred HHHHHhh-cccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccC
Confidence 4333322 22211 1111111111 2335799999853110 00 011 1348999999999999
Q ss_pred EEEEEeCCC
Q 010274 312 YFVYSSPEA 320 (514)
Q Consensus 312 ~lvis~P~~ 320 (514)
++.+..|..
T Consensus 302 r~aiIlP~~ 310 (524)
T d2ar0a1 302 RAAVVVPDN 310 (524)
T ss_dssp EEEEEEEHH
T ss_pred cEEEEEehH
Confidence 999999854
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.18 E-value=0.042 Score=52.20 Aligned_cols=83 Identities=19% Similarity=0.186 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHc-CCCeEEEeecC
Q 010274 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGT 270 (514)
Q Consensus 194 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d~ 270 (514)
...+.+.+.+.. ....+|||||+|+|.++..|++ ..|+++++++..+..-...+.... ..++.+..+|+
T Consensus 8 ~i~~kIv~~~~~--------~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~ 79 (278)
T d1zq9a1 8 LIINSIIDKAAL--------RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV 79 (278)
T ss_dssp HHHHHHHHHTCC--------CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCT
T ss_pred HHHHHHHHHhCC--------CCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHH
Confidence 345556665543 2346899999999999999984 578888887755433322221111 13567788887
Q ss_pred CCCCCCCCCceEEEec
Q 010274 271 KRLPYPSRSFELAHCS 286 (514)
Q Consensus 271 ~~lp~~~~sFDlV~~s 286 (514)
....++ .++.|+++
T Consensus 80 l~~~~~--~~~~vV~N 93 (278)
T d1zq9a1 80 LKTDLP--FFDTCVAN 93 (278)
T ss_dssp TTSCCC--CCSEEEEE
T ss_pred hhhhhh--hhhhhhcc
Confidence 776655 35667644
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=95.14 E-value=0.023 Score=50.65 Aligned_cols=118 Identities=16% Similarity=0.095 Sum_probs=74.8
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHc-CCCeEEEeecCCCCC-----CCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLP-----YPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d~~~lp-----~~~~sFDlV~~s~ 287 (514)
...++|..+|.|..+..+++ ..|+++|.++.++ ..+++. .....+.......+. +..+.+|.|+...
T Consensus 19 g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai-----~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DL 93 (182)
T d1wg8a2 19 GGVYVDATLGGAGHARGILERGGRVIGLDQDPEAV-----ARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILADL 93 (182)
T ss_dssp TCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHH-----HHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEEC
T ss_pred CCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHH-----HHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEEEc
Confidence 35899999999999999985 3577887776554 444443 234556555543332 3346799998644
Q ss_pred cccccc-cc-------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 288 CRIDWL-QR-------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 288 ~~l~~~-~d-------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
.+-.+. .+ ....|.....+|+|||.+++.+-.. .++ +.+.+.+++.+++.+
T Consensus 94 GvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs----~Ed----~ivk~~~~e~~~k~i 152 (182)
T d1wg8a2 94 GVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS----LED----RVVKRFLRESGLKVL 152 (182)
T ss_dssp SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH----HHH----HHHHHHHHHHCSEES
T ss_pred cCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc----chh----HHHHHHHhhccceec
Confidence 322221 11 2347888899999999999876221 111 345667777766544
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=94.28 E-value=0.026 Score=52.94 Aligned_cols=69 Identities=9% Similarity=0.062 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcC---CCeEEEee
Q 010274 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERG---IPSTLGVL 268 (514)
Q Consensus 194 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg---~~~~~~~~ 268 (514)
..++.+.+.+.. .+...|||||||+|.++..|++ ..++++|++... .+..+++. .++.++.+
T Consensus 8 ~~~~~Iv~~~~~--------~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l-----~~~L~~~~~~~~~~~ii~~ 74 (252)
T d1qyra_ 8 FVIDSIVSAINP--------QKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDL-----AARLQTHPFLGPKLTIYQQ 74 (252)
T ss_dssp HHHHHHHHHHCC--------CTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHH-----HHHHHTCTTTGGGEEEECS
T ss_pred HHHHHHHHhcCC--------CCCCEEEEECCCchHHHHHHHccCCceEEEEeccch-----hHHHHHHhhhccchhHHhh
Confidence 455666666653 2245799999999999999985 467778776543 34444432 35777888
Q ss_pred cCCCCCC
Q 010274 269 GTKRLPY 275 (514)
Q Consensus 269 d~~~lp~ 275 (514)
|+...++
T Consensus 75 D~l~~~~ 81 (252)
T d1qyra_ 75 DAMTFNF 81 (252)
T ss_dssp CGGGCCH
T ss_pred hhhhhcc
Confidence 8776654
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=93.98 E-value=0.082 Score=51.93 Aligned_cols=43 Identities=23% Similarity=0.511 Sum_probs=33.6
Q ss_pred CCCCCCceEEEecccccccccc---------------------------------hHHHHHHHHhhCCCCeEEEEEe
Q 010274 274 PYPSRSFELAHCSRCRIDWLQR---------------------------------DGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 274 p~~~~sFDlV~~s~~~l~~~~d---------------------------------~~~lL~el~RvLrPGG~lvis~ 317 (514)
-||+++.|++||+. .+||+.. ...+|+.=.+-|+|||+++++.
T Consensus 134 LfP~~Slh~~~Ss~-alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 134 LFPRNTLHFIHSSY-SLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp CSCTTCBSCEEEES-CTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred cCCCCceEEeeehh-hhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 37889999999988 5999641 1236677778899999999865
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.36 E-value=0.055 Score=49.87 Aligned_cols=92 Identities=17% Similarity=0.285 Sum_probs=56.7
Q ss_pred EEEeecCCCC--CCCCCCceEEEecccc----------cccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhH
Q 010274 264 TLGVLGTKRL--PYPSRSFELAHCSRCR----------IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIW 331 (514)
Q Consensus 264 ~~~~~d~~~l--p~~~~sFDlV~~s~~~----------l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~ 331 (514)
.+.++|..+. .++++++|+|+++--- ..|.......+.++.|+|||||.+++.....+.........+
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~ 85 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLI 85 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHH
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchh
Confidence 3556664332 3568999999986310 112233356889999999999999986644332222222234
Q ss_pred HHHHHHHHhcCcEEEEEecceEEEeccC
Q 010274 332 NAMYDLLKSMCWKIVSKKDQTVIWAKPI 359 (514)
Q Consensus 332 ~~l~~ll~~~Gf~~v~~~~~~~iw~Kp~ 359 (514)
..+..+.+..||.... ..+|.++.
T Consensus 86 ~~~~~~~~~~~~~~~~----~i~~~k~~ 109 (279)
T d1eg2a_ 86 SIISHMRQNSKMLLAN----LIIWNYPN 109 (279)
T ss_dssp HHHHHHHHHCCCEEEE----EEEEECSC
T ss_pred hHHHHHHhccCceeee----eeeecccc
Confidence 5566788889987653 34566654
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=91.92 E-value=0.15 Score=43.68 Aligned_cols=91 Identities=14% Similarity=0.069 Sum_probs=57.5
Q ss_pred CCeEEEECCC-CchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC---------CCCCCceE
Q 010274 216 IRNVLDVGCG-VASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---------YPSRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp---------~~~~sFDl 282 (514)
..+||=+||| .|.++..++. .+|+++ +.++..++.+++.+....+..-...... ...+.+|+
T Consensus 27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v-----~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~ 101 (170)
T d1e3ja2 27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCT-----ARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNV 101 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEE-----ESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred CCEEEEEcccccchhhHhhHhhhccccccc-----chHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCce
Confidence 3579999988 5566666653 344444 5566777888888766544322111110 01246898
Q ss_pred EEecccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 283 V~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
|+-.-. ....+..+.++|||||++++...
T Consensus 102 vid~~g-------~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 102 TIDCSG-------NEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp EEECSC-------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred eeecCC-------ChHHHHHHHHHHhcCCceEEEec
Confidence 873321 13578889999999999998653
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=90.00 E-value=0.16 Score=45.94 Aligned_cols=73 Identities=14% Similarity=0.039 Sum_probs=47.2
Q ss_pred CCCCCceEEEeccc-------------ccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc
Q 010274 275 YPSRSFELAHCSRC-------------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 341 (514)
Q Consensus 275 ~~~~sFDlV~~s~~-------------~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~ 341 (514)
++++++|+|+++-- .-+|.......+.++.|+|+|||.+++.... .....+...+...
T Consensus 19 lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~---------~~~~~~~~~~~~~ 89 (256)
T d1g60a_ 19 VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP---------FNCAFICQYLVSK 89 (256)
T ss_dssp SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH---------HHHHHHHHHHHHT
T ss_pred CcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCc---------hhhhhhhhhhhcc
Confidence 45788999988531 0111112245888999999999998864321 1234566778889
Q ss_pred CcEEEEEecceEEEeccCc
Q 010274 342 CWKIVSKKDQTVIWAKPIS 360 (514)
Q Consensus 342 Gf~~v~~~~~~~iw~Kp~~ 360 (514)
||.... ..+|.|+..
T Consensus 90 g~~~~~----~iiW~k~~~ 104 (256)
T d1g60a_ 90 GMIFQN----WITWDKRDG 104 (256)
T ss_dssp TCEEEE----EEEECCCCS
T ss_pred cceeee----eeEeeeccc
Confidence 997653 458988654
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.66 E-value=0.12 Score=44.64 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=55.2
Q ss_pred CCeEEEECC--CCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC--------CCCCCceE
Q 010274 216 IRNVLDVGC--GVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGC--GtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp--------~~~~sFDl 282 (514)
..+||-+|+ |.|..+..++. ..|+++ ..++...+.+++.|....+. ..+.. ...+.||+
T Consensus 29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~-----~~~~~~~~~~~~~Ga~~vi~---~~~~~~~~~i~~~t~~~g~d~ 100 (174)
T d1yb5a2 29 GESVLVHGASGGVGLAACQIARAYGLKILGT-----AGTEEGQKIVLQNGAHEVFN---HREVNYIDKIKKYVGEKGIDI 100 (174)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEE-----ESSHHHHHHHHHTTCSEEEE---TTSTTHHHHHHHHHCTTCEEE
T ss_pred CCEEEEEeccccccccccccccccCcccccc-----cccccccccccccCcccccc---cccccHHHHhhhhhccCCceE
Confidence 468999996 46667777664 334444 33455567788877654332 22211 13467999
Q ss_pred EEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 283 V~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
|+.... ...+.+..++|+|+|+++...
T Consensus 101 v~d~~g--------~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 101 IIEMLA--------NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp EEESCH--------HHHHHHHHHHEEEEEEEEECC
T ss_pred Eeeccc--------HHHHHHHHhccCCCCEEEEEe
Confidence 985531 246888899999999999753
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.38 E-value=0.044 Score=47.40 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=54.5
Q ss_pred CCeEEEECCC-CchHHHHHh---cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCC-CCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCG-VASFGAYLL---SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La---~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~l-p~~~~sFDlV~~s~~~l 290 (514)
..+||-+|+| .|.++..++ +.+|+++|.+ +..++.+++.|....+...+.... .-..+.||+|+......
T Consensus 28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~-----~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~ 102 (168)
T d1piwa2 28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRS-----SRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSL 102 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESS-----STTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCS
T ss_pred CCEEEEECCCCcchhHHHHhhhccccccccccc-----hhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCC
Confidence 4679999998 666666666 3455566554 345577778776544332221111 11235799887532111
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+ ...+....++|+|||++++..
T Consensus 103 ~-----~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 103 T-----DIDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp T-----TCCTTTGGGGEEEEEEEEECC
T ss_pred c-----cchHHHHHHHhhccceEEEec
Confidence 1 112456789999999999854
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=89.07 E-value=0.25 Score=42.84 Aligned_cols=89 Identities=25% Similarity=0.352 Sum_probs=55.4
Q ss_pred CCeEEEECCC-CchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCC---------CCCCCCCCce
Q 010274 216 IRNVLDVGCG-VASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK---------RLPYPSRSFE 281 (514)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~---------~lp~~~~sFD 281 (514)
+.+||-+||| .|.++..++.. .|+++ +.++...+.+++.|....+...+.. ++ .....||
T Consensus 29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~-----~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~-~~~~g~D 102 (182)
T d1vj0a2 29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVI-----AGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDI-THGRGAD 102 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBSEEEEE-----ESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHH-TTTSCEE
T ss_pred CCEEEEECCCccchhheeccccccccccccc-----ccccccccccccccceEEEeccccchHHHHHHHHHh-hCCCCce
Confidence 4689999987 35666666642 34444 5566677888887765433222110 11 1234699
Q ss_pred EEEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 282 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 282 lV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+|+-.-.. ...++...++|+|||++++..
T Consensus 103 vvid~vG~-------~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 103 FILEATGD-------SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp EEEECSSC-------TTHHHHHHHHEEEEEEEEECC
T ss_pred EEeecCCc-------hhHHHHHHHHhcCCCEEEEEe
Confidence 98843211 236788899999999998754
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=86.33 E-value=0.41 Score=41.36 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=55.6
Q ss_pred CCeEEEECCCC-chHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC------CCCCCceEEE
Q 010274 216 IRNVLDVGCGV-ASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP------YPSRSFELAH 284 (514)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp------~~~~sFDlV~ 284 (514)
..+||=+|||. |.++..++.. .|+++ |.++..++.+++.|....+...+ .... .....||+|+
T Consensus 28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~-----d~~~~r~~~a~~lGa~~~i~~~~-~~~~~~v~~~t~g~G~D~vi 101 (174)
T d1jqba2 28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGV-----GSRPICVEAAKFYGATDILNYKN-GHIEDQVMKLTNGKGVDRVI 101 (174)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCSCEEEE-----CCCHHHHHHHHHHTCSEEECGGG-SCHHHHHHHHTTTSCEEEEE
T ss_pred CCEEEEEcCCcchhhhhhhhhcccccccccc-----cchhhhHHHHHhhCccccccccc-hhHHHHHHHHhhccCcceEE
Confidence 34688899985 6777777642 35555 45566678888877643332211 1110 1234599988
Q ss_pred ecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 285 ~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
-.-. . ...+.+..++|||+|.+++..
T Consensus 102 d~~g-~------~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 102 MAGG-G------SETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp ECSS-C------TTHHHHHHHHEEEEEEEEECC
T ss_pred EccC-C------HHHHHHHHHHHhcCCEEEEEe
Confidence 4431 1 236788889999999999854
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=83.73 E-value=7.5 Score=36.10 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=62.0
Q ss_pred CCeEEEECCCCchHHHHHh-cCCCccccCChhhhhHHHHHHHHHcCC--C--eEEEeecCCCC-C--CCCCCce----EE
Q 010274 216 IRNVLDVGCGVASFGAYLL-SHDIIAMSLAPNDVHENQIQFALERGI--P--STLGVLGTKRL-P--YPSRSFE----LA 283 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La-~~~V~gvdis~~dis~a~~~~A~~rg~--~--~~~~~~d~~~l-p--~~~~sFD----lV 283 (514)
++.|+.+|||.=.-+..|. ...+..++++..++-+...+...+.+. . ..++..|...- . +.+..|| .+
T Consensus 90 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ptl 169 (297)
T d2uyoa1 90 IRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA 169 (297)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred CCeEEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCEE
Confidence 3568889999888777765 345556666544444444344444432 2 23444443321 1 1111222 45
Q ss_pred Eecccccccccch--HHHHHHHHhhCCCCeEEEEEeC
Q 010274 284 HCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 284 ~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P 318 (514)
+...+++.|++.. ..+|+.+.....||..+++...
T Consensus 170 ~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~ 206 (297)
T d2uyoa1 170 WLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS 206 (297)
T ss_dssp EEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred EEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 5566678887554 6699999999999999998654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.65 E-value=0.39 Score=40.71 Aligned_cols=92 Identities=12% Similarity=0.085 Sum_probs=52.0
Q ss_pred CCeEEEECCCC-chHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC---C-CCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR---L-PYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~---l-p~~~~sFDlV~~s~~~l 290 (514)
..+||=+|+|. |.++..++... +..+...+.++..++.+++.|....+...+... + ....+.+|.|.++..
T Consensus 28 g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~-- 103 (166)
T d1llua2 28 GQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVS-- 103 (166)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSC--
T ss_pred CCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccccc--
Confidence 35788899873 45555555321 233333456667778888887654332111100 0 011223455554331
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
...+....+.|+|||++++..
T Consensus 104 ------~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 104 ------NSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp ------HHHHHHHHTTEEEEEEEEECC
T ss_pred ------chHHHHHHHHhcCCcEEEEEE
Confidence 346888999999999999854
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=81.53 E-value=0.39 Score=42.47 Aligned_cols=94 Identities=15% Similarity=0.049 Sum_probs=57.8
Q ss_pred CCeEEEECCCC-chHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCC--------CCCCceE
Q 010274 216 IRNVLDVGCGV-ASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY--------PSRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~--------~~~sFDl 282 (514)
..+||-+|||. |..+..++. ..|+++ |.++..++.|++.|....+ +....++ ....+|+
T Consensus 26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~-----d~~~~rl~~a~~~Ga~~~~---~~~~~~~~~~i~~~t~g~g~D~ 97 (195)
T d1kola2 26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVG-----DLNPARLAHAKAQGFEIAD---LSLDTPLHEQIAALLGEPEVDC 97 (195)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEE-----ESCHHHHHHHHHTTCEEEE---TTSSSCHHHHHHHHHSSSCEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHhhcccceeee-----cccchhhHhhhhccccEEE---eCCCcCHHHHHHHHhCCCCcEE
Confidence 35899999997 556666553 234455 4556677888888764322 1111111 2346899
Q ss_pred EEeccc-----cccc---ccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 283 AHCSRC-----RIDW---LQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 283 V~~s~~-----~l~~---~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
++-.-. ..++ .......++.+.+++||||++++..
T Consensus 98 vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 98 AVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp EEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 884321 0011 1123468999999999999999864
|