Citrus Sinensis ID: 010285

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510---
Protein Sequence
MAAENGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKKKLDYHNGVKEGVISKMKNEERKVNPNCIKASNPYHECGERCFKRNGEANALGFKKQSDNHNGVTEGVISVKKNEGRKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSWSFGRKNKASDSQPGTPLTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDSVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccEEEEccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccEcccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccEccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEccEccccccccccccccccEEccEcccccccccccccccccccEEEcccEEEcccHHHHHHHHHHHcccHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHc
Coil and Loop (DISEMBL)
maaengrvhpnclnasnpyheCGMACLEKIaqghghketpkkkldyhngvKEGVISKMKneerkvnpncikasnpyhecgercfkrngeanalgfkkqsdnhngvtEGVISVkknegrkvdptcikasnpyhecgehcfkrngeanargvnkesgswsfgrknkasdsqpgtpltpravdkvavggqkangqharsenypkkkvesengksfsrpehfsreihpedhslnkekvrstqsvppsenikmndmsksppkesvtslpgaspskngkdnkvqapieihhstedggedipspadgsrnfsfsgidlasgdsddeeaqsvisdsvsvgkYHVRASISSILQSIISRYGDIaancnlesnsMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL
Flexible Loop (DISEMBL)
maaengrvhpnclnaSNPYHECGMACLEKIAQGHGHketpkkkldyhngVKEGViskmkneerkvnpncikasnpyhECGERCFKRNGEANALgfkkqsdnhngvtegvisvkknegrkvdptCIKASNPYHECGEHCFKRNGEANARGVNKesgswsfgrknkasdsqpgtpltpravDKVAVGGqkangqharsenypkkkvesengksfsrpehfsreihpedhslnkekvrstqsvppsenikmndmsksppKESVTSlpgaspskngkdnKVQAPIEIHHstedggedipspaDGSRNFSFSGIDLASGDSDDEEAQSVIsdsvsvgkyHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQatqskvtkfsqksladeil
Low Complexity Region (SEG)
MAAENGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKKKLDYHNGVKEGVISKMKNEERKVNPNCIKASNPYHECGERCFKRNGEANALGFKKQSDNHNGVTEGVISVKKNEGRKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSWSFGRKNKASDSQPGTPLTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDSVSVGKYHVRAsissilqsiisRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL
Disordered region (IsUnstruct)
************LNASNPYHECGMACLEKIA*************************************CIK**NPYHECGERCFKR************************************TCIKASNPYHECGEHCF*********************************************************************************************************************************************************************************************VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLL*********************************************************************
Disordered Region (DISOPRED)
************LNASNPYHECGMACL**************************************************ECGERCF**********************************************YHECGEHC***************************************************************************************************************************************************************************************************YHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEA****************************************************************R***IIQATQSKVTKFSQKSLADEIL
Disordered Region (DISEMBL)
MAAENGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKKKLDYHNGVKEGVISKMKNEERKVNPNCIKASNPYHECGERCFKRNGEANALGFKKQSDNHNGVTEGVISVKKNEGRKVDPTCIKASNPYHECGEHCFKRNGEANARG************************LTPRAVDKVAVGG*****************************EHFSREIHPEDHS*********************************************DNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLAS**********VISDSVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK**************
Disordered Region (DISPRO)
*******VHPNCLNASNPYHECGMACLEKIAQG******************************KVNPNCIKASNPYHECGERCFKRNGEAN**************************RKVDPTCIKASNPYHECGEHCFKRNGEAN********************************************************************************************************************************NKVQAPIEIHHSTE*******SP*****NFS*SGIDL***********SVISDSVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLAD**L
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAENGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKKKLDYHNGVKEGVISKMKNEERKVNPNCIKASNPYHECGERCFKRNGEANALGFKKQSDNHNGVTEGVISVKKNEGRKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSWSFGRKNKASDSQPGTPLTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDSVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVTKFSQKSLADEIL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	513
224105147	541	predicted protein [Populus trichocarpa]	0.976	0.926	0.490	1e-115
449454227	402	PREDICTED: uncharacterized protein LOC10	0.734	0.937	0.460	4e-81
255560551	400	conserved hypothetical protein [Ricinus	0.756	0.97	0.492	2e-80
356536380	437	PREDICTED: uncharacterized protein LOC10	0.769	0.903	0.390	2e-67
356574151	411	PREDICTED: uncharacterized protein LOC10	0.783	0.978	0.384	2e-65
224078359	224	predicted protein [Populus trichocarpa]	0.423	0.968	0.600	2e-63
449458628	442	PREDICTED: uncharacterized protein LOC10	0.826	0.959	0.345	5e-54
186516425	398	phospholipase-like (PEARLI 4) family pro	0.690	0.889	0.356	3e-52
145334227	401	phospholipase-like (PEARLI 4) family pro	0.690	0.882	0.356	3e-52
15236270	386	phospholipase-like (PEARLI 4) family pro	0.690	0.917	0.356	3e-52

>gi|224105147|ref|XP_002313701.1| predicted protein [Populus trichocarpa] gi|222850109|gb|EEE87656.1| predicted protein [Populus trichocarpa]

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 270/550 (49%), Positives = 334/550 (60%), Gaps = 49/550 (8%)

Query: 3   AENGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKKKLDYHNGVKEGVISKMKNEE 62
           AENGRVHP+C+NA+NPYHECG+ACLEKI+QG G KE  KKK DYHNGV    +SK  + E
Sbjct: 2   AENGRVHPDCVNAANPYHECGVACLEKISQGQGRKE--KKKSDYHNGVNGSWLSKNMDGE 59

Query: 63  RKVNPNCIKASNPYHECGERCFKRNGEANALGFKKQSDN------------------HNG 104
           R+  P C KASNPYH+C E C  R  E    G KK++                     N 
Sbjct: 60  RRAQPTCPKASNPYHKCEEFCSNRTAEPKPGGVKKETGGAKPCPKASNPYHKCEEFCSNR 119

Query: 105 VTEGVISVKKNEGRKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSW-----SF 159
             +      K +  +  P C +ASNP H+C E C  R  EAN +GV KESGS+     SF
Sbjct: 120 TADANPRGVKKQSERAQP-CPRASNPSHKCDEFCSNRTSEANPQGVEKESGSFLDTALSF 178

Query: 160 GRKNKASDSQPGTPLTPRAVD-----KVAVGGQKANGQHARSENYP-----KKKVESENG 209
           GRK K S+SQ  +P   RAV+     K AV    A     R+   P     KK  E EN 
Sbjct: 179 GRKKKESESQQNSP---RAVNNAPAVKGAVNNAPAVKAVRRAPPSPLILPTKKDEEPENS 235

Query: 210 KSFSRPEHFSREIHPEDHSLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVT--SLPG-A 266
           +SFS  +  S E + EDH+L+K  V+S   +  S  I   D  KSP K S+    +P  A
Sbjct: 236 RSFSSSQPHSDESYSEDHALDKVPVQSPGPMHVSGKI-TPDPPKSPSKISLACYKIPTPA 294

Query: 267 SPSKNGK--DNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSV 324
            P +NGK   +   AP   + S    G     P     NFSFSGI  AS  SD EE QSV
Sbjct: 295 EPQQNGKLHGSPKAAP---YPSANHVGRVTNGPITEYLNFSFSGISRASEGSDGEEVQSV 351

Query: 325 ISDSVSV-GKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQST 383
           +SDS    GKYHVRA+++SILQ I  +YGDIA    LES SMRAYYLECLC VVQELQ T
Sbjct: 352 VSDSCVSVGKYHVRANVASILQLIFEKYGDIATGSRLESASMRAYYLECLCFVVQELQCT 411

Query: 384 SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNL 443
              Q+TK+KV+EM+AVLKDVESAQIDV WLR+ILN+++E +E S QHQ  + +K+NC +L
Sbjct: 412 PFKQLTKSKVREMLAVLKDVESAQIDVSWLRDILNDLAEGMELSNQHQAAEESKSNCDDL 471

Query: 444 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503
           +ES KKELES M +LALKEK VA  K  + +T+  LS+LELES++L + I + QS+V KF
Sbjct: 472 IESKKKELESMMEDLALKEKAVADAKAQITETRTHLSNLELESSKLGETISSIQSRVEKF 531

Query: 504 SQKSLADEIL 513
            +K LADEIL
Sbjct: 532 HEKPLADEIL 541

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454227|ref|XP_004144857.1| PREDICTED: uncharacterized protein LOC101210853 [Cucumis sativus] gi|449519968|ref|XP_004167006.1| PREDICTED: uncharacterized protein LOC101226690 [Cucumis sativus]

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 194/421 (46%), Positives = 264/421 (62%), Gaps = 44/421 (10%)

Query: 116 EGRKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSW------SFGRKNKASDSQ 169
           E RKV P CI ASNP+HEC ++C K+  E+ A    K  GS+      SFGRK K S  +
Sbjct: 3   ERRKVRPDCIYASNPFHECTDYCIKKTAESKAGKDKKSKGSFRLDISKSFGRK-KGSRPK 61

Query: 170 PGTPLTPRAVDKVAVGGQKANGQHAR-----SENYPKKKVESENGKSFSRPEHF-SREIH 223
           P     P+ VD    GG+ ++   +      S   PKKKVES NG   S  + F S EIH
Sbjct: 62  P-----PKDVD----GGRYSSTVPSEPLSLNSRISPKKKVESINGGHISPAKRFYSEEIH 112

Query: 224 PEDHSLNKEKVRSTQSVPPSENIKMNDMS-KSPPKESVTSLPGASPSKNGKDNKVQAPIE 282
           PED SLN E+   T  +P  +++ M + S  SP K S+  L   S +KNG  N       
Sbjct: 113 PEDPSLNVEQ-HDTPRIPSYDSLMMPEYSVDSPKKGSIRMLEQMSNNKNGGGN------- 164

Query: 283 IHHSTEDGGEDIPSPADGSRNF---------SFSGIDLASGDSDDEEAQSVISDS-VSVG 332
            H +  D     P+  +G   F         S SG +    DSD+EE +SV S+  V VG
Sbjct: 165 -HETFFDNR--TPNGNNGKERFRKQSSESSFSLSGFEQTLVDSDEEEIESVNSEQCVPVG 221

Query: 333 KYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAK 392
           KYHV++S SSIL SI  +YGDIAA C LES SMR+YYLEC+C V+QELQST   Q+TK+K
Sbjct: 222 KYHVKSSFSSILTSIFEKYGDIAATCKLESVSMRSYYLECVCYVIQELQSTEFHQLTKSK 281

Query: 393 VKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELE 452
           V+E++A+ KDVES++I++ WL++ +NEI++A+E  +QH+ IDAAK +C   LES KKEL+
Sbjct: 282 VRELLAIFKDVESSEINITWLKSRINEIAQAVELRSQHRAIDAAKTDCEQNLESIKKELD 341

Query: 453 SQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 512
           SQM +LALKEKE++  K  VA+T+ARLS+LEL+S++L+++I +  SKV  F  KS +D++
Sbjct: 342 SQMADLALKEKELSDAKTKVAETEARLSELELKSSQLKEMISSIDSKVENFRCKSFSDDL 401

Query: 513 L 513
           L
Sbjct: 402 L 402

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560551|ref|XP_002521290.1| conserved hypothetical protein [Ricinus communis] gi|223539558|gb|EEF41146.1| conserved hypothetical protein [Ricinus communis]

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 198/402 (49%), Positives = 253/402 (62%), Gaps = 14/402 (3%)

Query: 119 KVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSW------SFGRKNKASDSQPGT 172
           +V P C+ ASNPYHECG  C ++  +       K+SGS+      SFGRK K S+SQP +
Sbjct: 6   RVHPDCVNASNPYHECGVACLEKIAQGQGWKEKKKSGSFILDTSLSFGRKKKGSESQPRS 65

Query: 173 PLTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKE 232
           P     V   A     A+    RS    KKKVES+NG S S     S E + +DHS +K 
Sbjct: 66  PKVANNVS-AAKAVYPADLSSPRSPFPTKKKVESDNGHSSSSSRQHSEESYSQDHSFDKG 124

Query: 233 KVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGE 292
           +V + + VP S N+K  D  K+    S T    A P++     K   P  I +     G 
Sbjct: 125 QVLAPELVPVSGNLK-PDGPKNLSLGSFTCFAIAPPTEQDDKEKSPLPGAIKNVEITNGR 183

Query: 293 DIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRY 351
                +  S NF+FSGI  A+  SDDEE  SVISDS VSVGKYHVRA+ +SILQSII +Y
Sbjct: 184 -----STESLNFTFSGISRATEGSDDEEILSVISDSCVSVGKYHVRANSASILQSIIDKY 238

Query: 352 GDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVD 411
           GDIAANC LES S+R YYLECLCSVVQELQSTSL Q+TK+KV+E++AVLKDVESAQIDV 
Sbjct: 239 GDIAANCRLESTSLRTYYLECLCSVVQELQSTSLNQLTKSKVRELLAVLKDVESAQIDVS 298

Query: 412 WLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKES 471
           WLR+ILN ++EA+E + + Q  + AK NC +++EST+KELES + EL  KE+ VA  K  
Sbjct: 299 WLRSILNGLTEAVELNNKQQAAEEAKTNCDHVIESTRKELESMVEELGQKEQAVANTKAR 358

Query: 472 VAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 513
           + +  A LS+LELES+ L   I + +SK+  F  K L D+IL
Sbjct: 359 IEEISAHLSELELESSELSDTILSLRSKIDNFHSKPLRDQIL 400

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536380|ref|XP_003536716.1| PREDICTED: uncharacterized protein LOC100788258 [Glycine max]

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 180/461 (39%), Positives = 248/461 (53%), Gaps = 66/461 (14%)

Query: 65  VNPNCIKASNPYHECGERCFKRNGEAN---------ALGFKKQSDNHNGVTEGVISVKKN 115
           V P+C+ A NPYHEC E C  R  EA             FK   D    VT+G +     
Sbjct: 31  VMPDCVYAPNPYHECTEACVHRIKEAKPGKPSKTKKGTAFK---DYRRSVTDGELGKTMK 87

Query: 116 EGRKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSWS--FGRKNKASDSQPGTP 173
           E ++    C KASNPYH C E+C K +           SG+ S  F R+ K   S+P  P
Sbjct: 88  EEKRRPSGCPKASNPYHVCDEYCQKAD-----------SGTMSLNFDRRKKVG-SKPELP 135

Query: 174 LTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEK 233
           +   +V    +G    +   +   NY +K                            KE+
Sbjct: 136 VL-DSVPPSKIGAIYLSDASSPLSNYSEK---------------------------TKEE 167

Query: 234 VRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGED 293
            +S + +P S  I + D+   P    V +        NG  N     + I  S +D G  
Sbjct: 168 SKSNELIPVSGEIHVLDVM--PTNHKVQA------KHNGDKNASPKVVPIT-SVDDTG-C 217

Query: 294 IPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRYG 352
           +  P  GS NF FSG+   + DSD EE +SV+S+S V VGKYHV+ S + IL+SI  +YG
Sbjct: 218 LTKPDGGSMNFCFSGLH-DNEDSDGEETESVVSESRVPVGKYHVKESFAPILRSIFEKYG 276

Query: 353 DIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW 412
           DI A+C+LES  MR+YY+EC+C VVQELQST +MQ+TK+K+KE+MA+LKDVESAQ+ V W
Sbjct: 277 DIGASCHLESVVMRSYYVECVCFVVQELQSTPIMQLTKSKIKELMAILKDVESAQLRVAW 336

Query: 413 LRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESV 472
           LR+I++EI+E IE   +H   + AKAN    +ES  KELES +  LA KE+EV  +K  +
Sbjct: 337 LRSIVDEITENIELIDEHCVAETAKANSDREVESLNKELESNLEILAQKEQEVTDIKTRI 396

Query: 473 AKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 513
              + RLS+LEL+S  L++ I + +SKV     KSL DE++
Sbjct: 397 EAIRERLSELELKSCDLDKNILSIKSKVDNLDSKSLLDELV 437

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574151|ref|XP_003555215.1| PREDICTED: uncharacterized protein LOC100811116 [Glycine max]

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 177/460 (38%), Positives = 247/460 (53%), Gaps = 58/460 (12%)

Query: 61  EERKVNPNCIKASNPYHECGERCFKRNGEAN----ALGFKKQSDNHNGVTEGVISVKKNE 116
           E  +V  NC+ A NPYHEC E C +R  EA     +   K   D    VT+G +  K  E
Sbjct: 3   EHGRVMANCVYAPNPYHECTEACVQRIKEAKPGKPSKTKKVFKDYRRSVTDGELGKKMKE 62

Query: 117 GRKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSWS--FGRKNKASDSQPGTPL 174
            ++    C KASNPYH C E+C K +           SG+ S  F R+ K   S+P  P+
Sbjct: 63  EKRRPSGCPKASNPYHVCDEYCQKAD-----------SGTMSLNFDRRKKVG-SKPELPV 110

Query: 175 TPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKV 234
              +V    +G    +   +   NY +K                            KE+ 
Sbjct: 111 L-DSVPPSKIGAIYLSDASSPLSNYSEK---------------------------TKEES 142

Query: 235 RSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGEDI 294
           +S + +P S  I + D+   P    V S        NG  N     + I  S +D G  +
Sbjct: 143 KSNELIPVSGEIHVLDVM--PTNHKVQS------KHNGDKNASPKVVPIT-SVDDTG-CL 192

Query: 295 PSPADGSRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRYGD 353
             P  GS NF  SG+   + DSD  E +SV+S+S V VGKYHV+ S + IL+SI  +YGD
Sbjct: 193 TKPDGGSMNFCLSGLH-DNEDSDGGETESVVSESRVPVGKYHVKESFAPILRSIFEKYGD 251

Query: 354 IAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWL 413
           I A+C+LES  MR+YY+EC+C VVQELQST +MQ+ K+K+ E+MA+LKDVESAQ+ V WL
Sbjct: 252 IGASCHLESVVMRSYYVECVCFVVQELQSTPIMQLAKSKIMELMAILKDVESAQLRVAWL 311

Query: 414 RNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVA 473
           RNI++EI+E IE   +H   + AKAN    +E+  KELES +  LA KE+EV  +K  + 
Sbjct: 312 RNIVDEIAENIELIDEHCMAEMAKANSDREMETLNKELESNLESLAQKEQEVTDIKTRIE 371

Query: 474 KTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 513
           + +  LS+LEL+S+ L + I + +SKV     KSL DE++
Sbjct: 372 EIREHLSELELKSSDLAKNILSIKSKVDNLDSKSLLDELV 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078359|ref|XP_002305527.1| predicted protein [Populus trichocarpa] gi|222848491|gb|EEE86038.1| predicted protein [Populus trichocarpa]

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 131/218 (60%), Positives = 164/218 (75%), Gaps = 1/218 (0%)

Query: 297 PADGSRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRYGDIA 355
           P   +  + + GI  AS +SD+EE QSVISDS VSVGKYHVR +I+SILQ I+ +YGDIA
Sbjct: 7   PWTNACVWEYHGISRASEESDEEEVQSVISDSCVSVGKYHVRENIASILQLILDKYGDIA 66

Query: 356 ANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRN 415
           A   LES SMRAYYLECLCSVV ELQ TS  Q+T +KV+EM+AVLKDVESAQIDV WLR+
Sbjct: 67  AGSRLESASMRAYYLECLCSVVHELQCTSFKQLTNSKVREMLAVLKDVESAQIDVSWLRD 126

Query: 416 ILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKT 475
           ILN+++E +E S+QHQ  + AK+ C + +ES KKELES M +LA KEK VA  K  +++T
Sbjct: 127 ILNDLAEGMELSSQHQAAEEAKSKCDHAIESIKKELESMMEDLAQKEKAVADAKAQISET 186

Query: 476 KARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 513
           + RL+ LEL+S+RL + I +  S V KF  K LADEIL
Sbjct: 187 RDRLNKLELDSSRLSETISSIWSTVEKFHDKPLADEIL 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458628|ref|XP_004147049.1| PREDICTED: uncharacterized protein LOC101220927 [Cucumis sativus] gi|449489625|ref|XP_004158368.1| PREDICTED: uncharacterized LOC101220927 [Cucumis sativus]

 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 157/455 (34%), Positives = 241/455 (52%), Gaps = 31/455 (6%)

Query: 68  NCIKASNPYHECGERCFKRNGEANALGFKKQSDNHNGVTEGVISVKKNEGRKVDPTCIKA 127
           +C  ASNPYH C E CF++ GE+     +K S    G +    S ++ +  + D  C + 
Sbjct: 10  DCSHASNPYHVCSEYCFEKKGESKKQIVRKDS----GDSAWKFSSERKKTVRSD--CTRG 63

Query: 128 SNPYHECGEHCFKRNGEANARGVNKESGSWSFGRKNKASDSQPGTPLTPRAVDKVAVGGQ 187
           SNPYH C E C     ++      + S   S G +  +       P +PR +        
Sbjct: 64  SNPYHNCDEFCSNMTTQSGRPKAERGSAVGSGGARRDS------LPKSPRKLSDPLASAV 117

Query: 188 KANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKVRSTQSVPPSEN-- 245
            +  Q        K  V  E+ K+   PE  +  +  ED    +E+ + ++ +  S N  
Sbjct: 118 SSKPQ------VTKTCVPPESSKTSVPPEERTHFV--EDSLTIEEQNKFSKLILVSANAL 169

Query: 246 -IKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIH----HSTEDGGEDIPSPADG 300
            ++ N++ K    E+ +     S     K +++   ++      H  E+G     SP   
Sbjct: 170 KVEANNLQKLHKTETYSITSVKSKEHITKSSEISELVQDEDPSVHEEEEGNHKTTSPNIT 229

Query: 301 SRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRYGDIAANCN 359
           S  F F  +      SD+ + +SV S+  V VGKYHV+ S++ ILQSI +++GDIAA+C 
Sbjct: 230 S--FPFPTMAPNQKGSDENDVKSVSSEPYVPVGKYHVKLSLAPILQSIFNKHGDIAASCK 287

Query: 360 LESNSMRAYYLECLCSVVQELQSTSLMQ-MTKAKVKEMMAVLKDVESAQIDVDWLRNILN 418
           LES S+R+YYLEC+C ++ ELQ T   Q ++K+KVKE++A+L DV S+ ++V WL +ILN
Sbjct: 288 LESISIRSYYLECVCYIIHELQHTKFSQKVSKSKVKELLAILNDVVSSGMNVGWLHSILN 347

Query: 419 EISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKAR 478
           +I+EA+E S Q  T++ AKANC + LE  K ELESQ  +L  KEKE+   K  VA T+AR
Sbjct: 348 DIAEAVESSGQQFTLEVAKANCDHELELIKNELESQTQDLTRKEKEMNDAKAKVAGTRAR 407

Query: 479 LSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 513
           LS+LE +  +L + I + Q KV       L D++L
Sbjct: 408 LSELESKYLQLNKEISSLQFKVNGLKCNDLTDDLL 442

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186516425|ref|NP_001119119.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|332661069|gb|AEE86469.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana]

 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 151/424 (35%), Positives = 224/424 (52%), Gaps = 70/424 (16%)

Query: 118 RKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKE------SGSWSFGRKNKASDSQPG 171
           RK  P C+ A NP+HEC   C ++  + + +   K+      S S SFGRK K S+SQP 
Sbjct: 17  RKAHPDCVYADNPFHECASACLEKIAQGHVKKNTKKQSSRLLSFSGSFGRKKKESNSQPP 76

Query: 172 TPLTPRAVDKVAVGGQKANGQHARSENYP----KKKVESENGKSFSRPEHFSREIHPEDH 227
           TPL+ R       G    N         P    KKK+ SE   SF+     S    P+D 
Sbjct: 77  TPLSARPYQNGRGGFANGNSPKVHHSVAPPASVKKKIVSETKNSFTS----SSSGDPDDF 132

Query: 228 SLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHST 287
             +K + + +Q++P S N  + D SK      V+  PG     NGK              
Sbjct: 133 FNHKPEKKPSQTIPLSSN-NLVDQSKV-----VSPKPGIQ-EHNGK-------------I 172

Query: 288 EDGGEDIPSPADGSRNFSFSGIDLASGDSD-----------------DEEAQSVISDS-V 329
            +GGE        +R FSF  +  + G                    + + +SV+SD+ V
Sbjct: 173 GEGGE--------TRLFSFLSLPRSPGKESNDDFSDDDDENNNEIGVELDLESVMSDTFV 224

Query: 330 SVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMT 389
           SVGKY VR+  S+IL ++I ++GDIA NC LES+SMR+ YLECLCS++QEL+ST + Q++
Sbjct: 225 SVGKYRVRSGSSTILSAVIEKHGDIAQNCKLESDSMRSRYLECLCSLMQELRSTPVGQLS 284

Query: 390 KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKK 449
           K KVKEM+AVLKD+ES  I+V WLR++L       EF+   + ++  K     L+++ ++
Sbjct: 285 KVKVKEMLAVLKDLESVNIEVAWLRSVLE------EFAQSQEDVENEKERHDGLVKAKRE 338

Query: 450 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLA 509
           ELE+Q  +L   EKEV  +K  + +T+A++ ++E E  R+E++      K+ KF  KS  
Sbjct: 339 ELEAQETDLVRMEKEVVEVKRRIEETRAQMVEIEAERLRMEKM----GFKMEKFKGKSFI 394

Query: 510 DEIL 513
           DE+L
Sbjct: 395 DELL 398

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334227|ref|NP_001078494.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|332661068|gb|AEE86468.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana]

 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 151/424 (35%), Positives = 224/424 (52%), Gaps = 70/424 (16%)

Query: 118 RKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKE------SGSWSFGRKNKASDSQPG 171
           RK  P C+ A NP+HEC   C ++  + + +   K+      S S SFGRK K S+SQP 
Sbjct: 20  RKAHPDCVYADNPFHECASACLEKIAQGHVKKNTKKQSSRLLSFSGSFGRKKKESNSQPP 79

Query: 172 TPLTPRAVDKVAVGGQKANGQHARSENYP----KKKVESENGKSFSRPEHFSREIHPEDH 227
           TPL+ R       G    N         P    KKK+ SE   SF+     S    P+D 
Sbjct: 80  TPLSARPYQNGRGGFANGNSPKVHHSVAPPASVKKKIVSETKNSFTS----SSSGDPDDF 135

Query: 228 SLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHST 287
             +K + + +Q++P S N  + D SK      V+  PG     NGK              
Sbjct: 136 FNHKPEKKPSQTIPLSSN-NLVDQSKV-----VSPKPGIQ-EHNGK-------------I 175

Query: 288 EDGGEDIPSPADGSRNFSFSGIDLASGDSD-----------------DEEAQSVISDS-V 329
            +GGE        +R FSF  +  + G                    + + +SV+SD+ V
Sbjct: 176 GEGGE--------TRLFSFLSLPRSPGKESNDDFSDDDDENNNEIGVELDLESVMSDTFV 227

Query: 330 SVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMT 389
           SVGKY VR+  S+IL ++I ++GDIA NC LES+SMR+ YLECLCS++QEL+ST + Q++
Sbjct: 228 SVGKYRVRSGSSTILSAVIEKHGDIAQNCKLESDSMRSRYLECLCSLMQELRSTPVGQLS 287

Query: 390 KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKK 449
           K KVKEM+AVLKD+ES  I+V WLR++L       EF+   + ++  K     L+++ ++
Sbjct: 288 KVKVKEMLAVLKDLESVNIEVAWLRSVLE------EFAQSQEDVENEKERHDGLVKAKRE 341

Query: 450 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLA 509
           ELE+Q  +L   EKEV  +K  + +T+A++ ++E E  R+E++      K+ KF  KS  
Sbjct: 342 ELEAQETDLVRMEKEVVEVKRRIEETRAQMVEIEAERLRMEKM----GFKMEKFKGKSFI 397

Query: 510 DEIL 513
           DE+L
Sbjct: 398 DELL 401

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236270|ref|NP_195237.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|30690215|ref|NP_849495.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|14326527|gb|AAK60308.1|AF385717_1 AT4g35110/M4E13_160 [Arabidopsis thaliana] gi|2924521|emb|CAA17775.1| putative protein [Arabidopsis thaliana] gi|7270462|emb|CAB80228.1| putative protein [Arabidopsis thaliana] gi|22137306|gb|AAM91498.1| AT4g35110/M4E13_160 [Arabidopsis thaliana] gi|23397133|gb|AAN31850.1| unknown protein [Arabidopsis thaliana] gi|332661066|gb|AEE86466.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|332661067|gb|AEE86467.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana]

 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 151/424 (35%), Positives = 224/424 (52%), Gaps = 70/424 (16%)

Query: 118 RKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKE------SGSWSFGRKNKASDSQPG 171
           RK  P C+ A NP+HEC   C ++  + + +   K+      S S SFGRK K S+SQP 
Sbjct: 5   RKAHPDCVYADNPFHECASACLEKIAQGHVKKNTKKQSSRLLSFSGSFGRKKKESNSQPP 64

Query: 172 TPLTPRAVDKVAVGGQKANGQHARSENYP----KKKVESENGKSFSRPEHFSREIHPEDH 227
           TPL+ R       G    N         P    KKK+ SE   SF+     S    P+D 
Sbjct: 65  TPLSARPYQNGRGGFANGNSPKVHHSVAPPASVKKKIVSETKNSFTS----SSSGDPDDF 120

Query: 228 SLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHST 287
             +K + + +Q++P S N  + D SK      V+  PG     NGK              
Sbjct: 121 FNHKPEKKPSQTIPLSSN-NLVDQSKV-----VSPKPGIQ-EHNGK-------------I 160

Query: 288 EDGGEDIPSPADGSRNFSFSGIDLASGDSD-----------------DEEAQSVISDS-V 329
            +GGE        +R FSF  +  + G                    + + +SV+SD+ V
Sbjct: 161 GEGGE--------TRLFSFLSLPRSPGKESNDDFSDDDDENNNEIGVELDLESVMSDTFV 212

Query: 330 SVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMT 389
           SVGKY VR+  S+IL ++I ++GDIA NC LES+SMR+ YLECLCS++QEL+ST + Q++
Sbjct: 213 SVGKYRVRSGSSTILSAVIEKHGDIAQNCKLESDSMRSRYLECLCSLMQELRSTPVGQLS 272

Query: 390 KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKK 449
           K KVKEM+AVLKD+ES  I+V WLR++L       EF+   + ++  K     L+++ ++
Sbjct: 273 KVKVKEMLAVLKDLESVNIEVAWLRSVLE------EFAQSQEDVENEKERHDGLVKAKRE 326

Query: 450 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLA 509
           ELE+Q  +L   EKEV  +K  + +T+A++ ++E E  R+E++      K+ KF  KS  
Sbjct: 327 ELEAQETDLVRMEKEVVEVKRRIEETRAQMVEIEAERLRMEKM----GFKMEKFKGKSFI 382

Query: 510 DEIL 513
           DE+L
Sbjct: 383 DELL 386

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_IX0308 hypothetical protein (541 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	513
pfam05278	234	pfam05278, PEARLI-4, Arabidopsis phospholipase-lik	7e-66
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-04
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	0.002

>gnl|CDD|218534 pfam05278, PEARLI-4, Arabidopsis phospholipase-like protein (PEARLI 4)

 Score =  212 bits (542), Expect = 7e-66
 Identities = 99/193 (51%), Positives = 134/193 (69%), Gaps = 1/193 (0%)

Query: 320 EAQSVISDS-VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQ 378
           + QSV+SDS VSVGKY VRAS+S+ LQ+II ++GDIA+N  L+S S R+YYLECL SVVQ
Sbjct: 42  DLQSVMSDSYVSVGKYRVRASVSTTLQAIIDKHGDIASNSKLQSLSTRSYYLECLASVVQ 101

Query: 379 ELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKA 438
           ELQST L Q+++++VKEM+AV+KD+ES +I V WLR++L E +EA+E+  Q +T    K 
Sbjct: 102 ELQSTPLRQLSESRVKEMLAVVKDLESVKIRVGWLRSVLEEFAEAVEYFDQQETAVVEKE 161

Query: 439 NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 498
                +   K+E+E Q  EL  KEKEV   +E V +   RL +LE++  RLE+ +    S
Sbjct: 162 RHERDVLLKKQEMEKQEAELVRKEKEVKEFREKVEEMAGRLGELEMKRLRLEKRLDFLGS 221

Query: 499 KVTKFSQKSLADE 511
           KV KF  KS  DE
Sbjct: 222 KVEKFKGKSFLDE 234

This family contains several phospholipase-like proteins from Arabidopsis thaliana which are homologous to PEARLI 4. Length = 234

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 8e-04
 Identities = 26/129 (20%), Positives = 59/129 (45%), Gaps = 1/129 (0%)

Query: 379 ELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEF-STQHQTIDAAK 437
           E +   L    +   +E+ ++  ++ S +  ++ LR  L E+   +E    +   ++   
Sbjct: 673 EEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEEL 732

Query: 438 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 497
               + LE  ++ELE    EL   ++ +  L+E +   +  L+ L+ E   LE+  QA Q
Sbjct: 733 EQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQ 792

Query: 498 SKVTKFSQK 506
            ++ +  ++
Sbjct: 793 EELEELEEE 801

Length = 1163

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 8/116 (6%)

Query: 375 SVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTID 434
            V++ L    ++ +   K +     L+ + S    +    + L       + +   +   
Sbjct: 20  EVLEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLP--KLNPLREEKK 77

Query: 435 AAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLE 490
                 V  LE   K++E ++ ++   EKE+  L+E +++ +  + +LE E  RLE
Sbjct: 78  KVS---VKSLEELIKDVEEELEKI---EKEIKELEEEISELENEIKELEQEIERLE 127

Length = 646

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	513
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	100.0
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	99.65
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	98.04
PRK11637	428	AmiB activator; Provisional	92.8
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	91.79
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	91.43
COG4026	290	Uncharacterized protein containing TOPRIM domain,	91.2
PHA02562	562	46 endonuclease subunit; Provisional	89.01
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	88.99
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	88.93
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	88.18
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	87.36
PRK11637	428	AmiB activator; Provisional	87.32
PRK13182	175	racA polar chromosome segregation protein; Reviewe	87.28
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	87.2
PF10186	302	Atg14: UV radiation resistance protein and autopha	86.99
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	86.68
PRK04863	1486	mukB cell division protein MukB; Provisional	86.57
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	86.24
PRK02224	880	chromosome segregation protein; Provisional	85.96
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	85.26
PRK01156	895	chromosome segregation protein; Provisional	85.15
PF04740	204	LXG: LXG domain of WXG superfamily; InterPro: IPR0	85.08
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	84.98
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	84.56
COG4026	290	Uncharacterized protein containing TOPRIM domain,	84.51
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	84.36
cd04776	118	HTH_GnyR Helix-Turn-Helix DNA binding domain of th	84.03
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	83.81
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	83.79
PF10186	302	Atg14: UV radiation resistance protein and autopha	83.18
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	83.06
PF15112	307	DUF4559: Domain of unknown function (DUF4559)	82.7
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	82.48
PRK02224	880	chromosome segregation protein; Provisional	82.47
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	82.26
PF05600	507	DUF773: Protein of unknown function (DUF773); Inte	81.77
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	81.26
COG3937	108	Uncharacterized conserved protein [Function unknow	81.22
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	81.12
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	81.05
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	80.82
PRK04863	1486	mukB cell division protein MukB; Provisional	80.37
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	80.14
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	80.08

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=100.00  E-value=3.3e-61  Score=474.20  Aligned_cols=216  Identities=50%  Similarity=0.738  Sum_probs=210.3

Q ss_pred             CCCCCCcccccccccccCC---CCCcccccccccce-EEeccEEeecchHHHHHHHHhHcccccccCcccchhHHHHHHH
Q 010285          296 SPADGSRNFSFSGIDLASG---DSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLE  371 (513)
Q Consensus       296 ~~~~eS~~fS~~~i~~~~~---~~D~eE~~SvvsEt-V~VnGFqVl~Sqv~iV~~IFeKHPDIAsnf~lKs~~lRs~YMn  371 (513)
                      +.|++|++||++.|.+|.+   +++++|++|+++|+ |+||||||++||++||++||+||||||+||+++|++||++||+
T Consensus        50 ~l~~~s~sftl~~~~~~~~~~~~~~~~e~~Sv~ses~V~VngY~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe  129 (269)
T PF05278_consen   50 ELPDESQSFTLSEIECMKGLKTNEGDEEMSSVISESIVSVNGYQVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLE  129 (269)
T ss_pred             CCCCcCccccHHHHHHHhcccccccchhhhhccccceeeECCEEEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHH
Confidence            5678999999999999875   56778999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHH
Q 010285          372 CLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKEL  451 (513)
Q Consensus       372 ~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkEL  451 (513)
                      +||+||++||++|+++||++||.+|+++|.||++|||+|+|||++|+||.++++++++|++++++|++.++.++..+.||
T Consensus       130 ~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~EL  209 (269)
T PF05278_consen  130 CLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEEL  209 (269)
T ss_pred             HHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhh
Q 010285          452 ESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADE  511 (513)
Q Consensus       452 Ee~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~  511 (513)
                      ++++++|+++++++++++.||++|++||++||+++++|+++|.+++|||++|+||||+|+
T Consensus       210 e~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~sl~~~  269 (269)
T PF05278_consen  210 EELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGKSLLDE  269 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence            999999999999999999999999999999999999999999999999999999999985

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=99.65  E-value=9.7e-16  Score=148.87  Aligned_cols=121  Identities=24%  Similarity=0.338  Sum_probs=107.6

Q ss_pred             ccEEeecchHHHHHHHHhHcccccccCcccchhHHHHHHHHHHHHHHHHh--cchhhhccHHHHHHHHHHHhHHHhcCcc
Q 010285          332 GKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQ--STSLMQMTKAKVKEMMAVLKDVESAQID  409 (513)
Q Consensus       332 nGFqVl~Sqv~iV~~IFeKHPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~--kspl~eLS~~dL~ea~~~L~dLe~aGfK  409 (513)
                      |||+|+++|++++..||++||++|+.|+.+++++|..||+.|+++|++++  +++ +.++..++.+|..++.+++.+||+
T Consensus       156 ~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~  234 (297)
T KOG1987|consen  156 NGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSL-QEASNYDLKEAKSALTYVIAAGFK  234 (297)
T ss_pred             ceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccH-HHhchhHHHHHHHHHHHHHhccch
Confidence            99999999999999999999999999999999999999999999999999  778 999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010285          410 VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG  467 (513)
Q Consensus       410 VDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d  467 (513)
                      ||||.++++++.+.++              .+...+...+++++++..+..+......
T Consensus       235 ld~l~~~~~~~~~k~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (297)
T KOG1987|consen  235 LDWLEKKLNEVKEKKK--------------KDLWYEIRLQELEEELKSLKDKCSDLEG  278 (297)
T ss_pred             HhHHHHHHHHHHHhhh--------------HHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence            9999999999998873              1345555666667777777766665554

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=98.04  E-value=0.00028  Score=68.03  Aligned_cols=127  Identities=20%  Similarity=0.346  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHH
Q 010285          368 YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLEST  447 (513)
Q Consensus       368 ~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~  447 (513)
                      ..|=+..+|++...+.-+.+ +.+.+..-..+|.+|+.-||+|.-|+.||+++...+.   .+..+.+..+..+..++..
T Consensus        47 Glm~~f~~l~e~v~~l~idd-~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~---~~~~~~e~~k~le~~~~~~  122 (190)
T PF05266_consen   47 GLMVTFANLAEKVKKLQIDD-SRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKD---DQEKLLEERKKLEKKIEEK  122 (190)
T ss_pred             HHHHHHHHHHHHHHHcccCC-cHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHH
Confidence            45677788888888888444 8999999999999999999999999999999887663   3333333333333333332


Q ss_pred             ---HHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010285          448 ---KKELESQMNELALKEKEVAG----LKESVAKTKARLSDLELESNRLEQIIQATQS  498 (513)
Q Consensus       448 ---kkELEe~leeL~qKekev~d----~~erv~e~k~RL~~LE~ess~L~k~v~~~kS  498 (513)
                         .+++|+.+.+|.++--++.+    +...-++....+.+|+-+-..|.+.+.+++.
T Consensus       123 ~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~  180 (190)
T PF05266_consen  123 EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAEL  180 (190)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               23334443333333333333    1112223334455555555555555555544

>PRK11637 AmiB activator; Provisional

Probab=92.80  E-value=4.7  Score=42.75  Aligned_cols=84  Identities=19%  Similarity=0.348  Sum_probs=43.1

Q ss_pred             hhhHHHHHHHHHH-hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHhhh
Q 010285          413 LRNILNEISEAIE-FSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEK----EVAGLKESVAKTKARLSDLELESN  487 (513)
Q Consensus       413 LekKLeEV~Eare-~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKek----ev~d~~erv~e~k~RL~~LE~ess  487 (513)
                      -...|+++...++ +....+.++.++..    ++....+++.+..+|....+    .+..++..+.+....|.+|+....
T Consensus       168 d~~~l~~l~~~~~~L~~~k~~le~~~~~----l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~  243 (428)
T PRK11637        168 RQETIAELKQTREELAAQKAELEEKQSQ----QKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANES  243 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555666655553 22222333333322    22333344444444433333    355566666666777777777777


Q ss_pred             hHHHHHHHhhhhh
Q 010285          488 RLEQIIQATQSKV  500 (513)
Q Consensus       488 ~L~k~v~~~kSKV  500 (513)
                      +|.+.|..++-..
T Consensus       244 ~L~~~I~~l~~~~  256 (428)
T PRK11637        244 RLRDSIARAEREA  256 (428)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777776655433

>smart00787 Spc7 Spc7 kinetochore protein

Probab=91.79  E-value=7.9  Score=40.41  Aligned_cols=64  Identities=19%  Similarity=0.370  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccch
Q 010285          445 ESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSL  508 (513)
Q Consensus       445 e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl  508 (513)
                      ..++.+|.+...++..+.+++.+.+.++.+...++.....+-..+...|..+.+.+++-.+.+.
T Consensus       207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~  270 (312)
T smart00787      207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTF  270 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            3345556666666666666666666666666666666666666666666666666666666554

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=91.43  E-value=8.6  Score=39.76  Aligned_cols=31  Identities=23%  Similarity=0.284  Sum_probs=12.0

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhh
Q 010285          458 LALKEKEVAGLKESVAKTKARLSDLELESNR  488 (513)
Q Consensus       458 L~qKekev~d~~erv~e~k~RL~~LE~ess~  488 (513)
                      |.+.+.++..+..+|++..++..++..+-..
T Consensus       232 l~el~~el~~l~~~i~~~~~~k~~l~~eI~e  262 (325)
T PF08317_consen  232 LAELQEELEELEEKIEELEEQKQELLAEIAE  262 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333444444444433333333

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=91.20  E-value=1.5  Score=44.57  Aligned_cols=58  Identities=21%  Similarity=0.216  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010285          447 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS  504 (513)
Q Consensus       447 ~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~  504 (513)
                      ..+|-++.+++|.+++.++.+.++|+..++..+++|+.+..+|.--+.+++-+.+.+.
T Consensus       147 ~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe  204 (290)
T COG4026         147 LQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE  204 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence            3344445555666666666666667777777777777666666555555665555543

>PHA02562 46 endonuclease subunit; Provisional

Probab=89.01  E-value=9.2  Score=41.13  Aligned_cols=52  Identities=13%  Similarity=0.229  Sum_probs=23.3

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhH
Q 010285          438 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL  489 (513)
Q Consensus       438 d~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L  489 (513)
                      ...+..+...+..|++...++...+.++..+..++.+...+|.+|+.+..++
T Consensus       340 ~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~  391 (562)
T PHA02562        340 LELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI  391 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444444444444444444444443

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=88.99  E-value=7.4  Score=47.62  Aligned_cols=51  Identities=4%  Similarity=0.114  Sum_probs=42.5

Q ss_pred             hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHH
Q 010285          386 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAA  436 (513)
Q Consensus       386 ~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~e  436 (513)
                      -.+++.+|..+...+..|++..=+|+=|+.+++.+.+....++.|......
T Consensus       215 ~~l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~  265 (1353)
T TIGR02680       215 PPLDDDELTDVADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLR  265 (1353)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            679999999999999999999999998988888888877777766664333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=88.93  E-value=6.1  Score=36.64  Aligned_cols=37  Identities=14%  Similarity=0.411  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010285          469 KESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ  505 (513)
Q Consensus       469 ~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~  505 (513)
                      ++.+.++++-+.++..+...+...|..|..|+...++
T Consensus        88 ~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~  124 (126)
T PF07889_consen   88 KDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE  124 (126)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3456667777777777777777777777777776654

The region featured in this family is approximately 100 amino acids long.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=88.18  E-value=21  Score=41.01  Aligned_cols=21  Identities=14%  Similarity=0.123  Sum_probs=10.2

Q ss_pred             EEeccEEeecchHHHHHHHHhHcc
Q 010285          329 VSVGKYHVRASISSILQSIISRYG  352 (513)
Q Consensus       329 V~VnGFqVl~Sqv~iV~~IFeKHP  352 (513)
                      ..+||..+..  . -|..+|...|
T Consensus       112 ~~~~~~~~~~--~-~~~~~l~~~~  132 (1179)
T TIGR02168       112 YFINGQPCRL--K-DIQDLFLDTG  132 (1179)
T ss_pred             eeECCCcccH--H-HHHHHHhccC
Confidence            4567755522  2 2455555543

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=87.36  E-value=8.7  Score=35.63  Aligned_cols=75  Identities=17%  Similarity=0.273  Sum_probs=41.1

Q ss_pred             hHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010285          415 NILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ  494 (513)
Q Consensus       415 kKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~  494 (513)
                      +.|+.|.++..         ..|+-+..++..+..+|+++.+=..+-.++|.+++.-+..+..-+..++.....|+-.|.
T Consensus        50 kql~~vs~~l~---------~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~  120 (126)
T PF07889_consen   50 KQLEQVSESLS---------STKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID  120 (126)
T ss_pred             HHHHHHHHHHH---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56776666553         222223445555555555555555555555555556666666666666655555555555


Q ss_pred             Hhhh
Q 010285          495 ATQS  498 (513)
Q Consensus       495 ~~kS  498 (513)
                      .+..
T Consensus       121 ~ie~  124 (126)
T PF07889_consen  121 EIEE  124 (126)
T ss_pred             HHhc
Confidence            5443

The region featured in this family is approximately 100 amino acids long.

>PRK11637 AmiB activator; Provisional

Probab=87.32  E-value=26  Score=37.35  Aligned_cols=14  Identities=14%  Similarity=0.114  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHH
Q 010285          365 MRAYYLECLCSVVQ  378 (513)
Q Consensus       365 lRs~YMn~Ll~LIe  378 (513)
                      +|-..+-+|+.++-
T Consensus        20 ~~~~~~~~ll~~~~   33 (428)
T PRK11637         20 IRPILYASVLSAGV   33 (428)
T ss_pred             hhhHHHHHHHHHHH
Confidence            34444444444333

>PRK13182 racA polar chromosome segregation protein; Reviewed

Probab=87.28  E-value=5.3  Score=38.59  Aligned_cols=134  Identities=12%  Similarity=0.163  Sum_probs=69.8

Q ss_pred             ccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH-HHHHHHHhhhhh
Q 010285          352 GDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN-EISEAIEFSTQH  430 (513)
Q Consensus       352 PDIAsnf~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLe-EV~Eare~~~~~  430 (513)
                      +++|.-+.+....+|.+|=.-++. +..-. +--..++++|| .....+..+..+|+.+.=++...- ++..+.=.....
T Consensus         4 ~evA~~lGVS~~TLRrw~k~g~L~-~~R~~-~G~R~y~~~dl-~~L~~I~~l~~~Gm~i~~i~~~~~~~l~~~~l~~~G~   80 (175)
T PRK13182          4 PFVAKKLGVSPKTVQRWVKQLNLP-CEKNE-YGHYIFTEEDL-QLLEYVKSQIEEGQNMQDTQKPSSNDVEETQVNTIVQ   80 (175)
T ss_pred             HHHHHHHCcCHHHHHHHHHcCCCC-CCcCC-CCCEEECHHHH-HHHHHHHHHHHcCCCHHHHHHHhhhhhhHHHHHHcCC
Confidence            345566666666777766555543 11111 12477899999 789999999999999876654221 110000000011


Q ss_pred             hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHhhhhHHHH
Q 010285          431 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG---------LKESVAKTKARLSDLELESNRLEQI  492 (513)
Q Consensus       431 ~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d---------~~erv~e~k~RL~~LE~ess~L~k~  492 (513)
                      .++.+.    -.+++...+.|++.+++|.+.....+|         -|..++||..+|..||....++++.
T Consensus        81 ~t~~~R----~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~  147 (175)
T PRK13182         81 NISSVD----FEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPI  147 (175)
T ss_pred             ccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            111111    122333333344444444433333333         1556677777777777776666553

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=87.20  E-value=6.3  Score=40.94  Aligned_cols=80  Identities=21%  Similarity=0.326  Sum_probs=67.5

Q ss_pred             hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010285          426 FSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ  505 (513)
Q Consensus       426 ~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~  505 (513)
                      |.+++.....--.++-.+....++||+.|-+.+...|++...|+.+...+-.-|..+-.+...+.+-+..++-|+++..+
T Consensus       221 Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~  300 (309)
T PF09728_consen  221 YSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEK  300 (309)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444455568888899999999999999999999999999999999999999999999999999999887643

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=86.99  E-value=12  Score=36.49  Aligned_cols=15  Identities=33%  Similarity=0.348  Sum_probs=8.2

Q ss_pred             cchhhhhhHHHHHHH
Q 010285          408 IDVDWLRNILNEISE  422 (513)
Q Consensus       408 fKVDWLekKLeEV~E  422 (513)
                      ...+=|+.+++++.+
T Consensus        34 ~~~~~l~~~i~~~l~   48 (302)
T PF10186_consen   34 EENEELRRRIEEILE   48 (302)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            334555566666555

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=86.68  E-value=21  Score=41.28  Aligned_cols=48  Identities=15%  Similarity=0.097  Sum_probs=24.8

Q ss_pred             EEeccEEeecchHHHHHHHHhHccccc-----------ccCcccchhHHHHHHHHHHHHHHH
Q 010285          329 VSVGKYHVRASISSILQSIISRYGDIA-----------ANCNLESNSMRAYYLECLCSVVQE  379 (513)
Q Consensus       329 V~VnGFqVl~Sqv~iV~~IFeKHPDIA-----------snf~lKs~~lRs~YMn~Ll~LIet  379 (513)
                      ..+||-.|.   ..-+..+|...|=..           ..|...++.-|..|++-+.++...
T Consensus       110 ~~~n~~~~~---~~~~~~~l~~~~~~~~~~~~~~qg~~~~~~~~~~~~r~~~~~~~~g~~~~  168 (1164)
T TIGR02169       110 YYLNGQRVR---LSEIHDFLAAAGIYPEGYNVVLQGDVTDFISMSPVERRKIIDEIAGVAEF  168 (1164)
T ss_pred             EEECCcccc---HHHHHHHHHHcCCCcCcceEEecchHHHHHCCCHHHHHHHHHHHhCHHHH
Confidence            567775552   344566665544111           122333555566667776664433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=86.57  E-value=22  Score=44.44  Aligned_cols=157  Identities=13%  Similarity=0.181  Sum_probs=74.0

Q ss_pred             EeecchHHHHHHHHhH-cccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhh
Q 010285          335 HVRASISSILQSIISR-YGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWL  413 (513)
Q Consensus       335 qVl~Sqv~iV~~IFeK-HPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWL  413 (513)
                      +|-.+.-.+.+++|.. -..+|++| ++++.=|-..++-.+++=+.+...-      ..|..+...|..|.   -.+.=|
T Consensus       250 ~~tq~drdlFk~lI~~~~~~~aad~-~r~~eERR~liEEAag~r~rk~eA~------kkLe~tE~nL~rI~---diL~EL  319 (1486)
T PRK04863        250 RVTQSDRDLFKHLITESTNYVAADY-MRHANERRVHLEEALELRRELYTSR------RQLAAEQYRLVEMA---RELAEL  319 (1486)
T ss_pred             HhCccHHHHHHHHhhhhhhhhHHHH-hhCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH---HHHHHH
Confidence            4445556666666654 35677788 6666666666666655544433332      22222222222222   112333


Q ss_pred             hhHHHHHHHHHHhhhhhhhHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 010285          414 RNILNEISEAIEFSTQHQTIDAA-------KANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES  486 (513)
Q Consensus       414 ekKLeEV~Eare~~~~~~~le~e-------Kd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~es  486 (513)
                      ..+|..+....+-+.+|..+..+       .......++++..++++..+.|...+.++.+..+++.++.+++.+|+.+.
T Consensus       320 e~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqL  399 (1486)
T PRK04863        320 NEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQL  399 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555554444444444444333       11222333333444444444455554555555555555555555555444


Q ss_pred             hhHHHHHHHhhhhhh
Q 010285          487 NRLEQIIQATQSKVT  501 (513)
Q Consensus       487 s~L~k~v~~~kSKV~  501 (513)
                      .++.+.+..++.++.
T Consensus       400 aelqqel~elQ~el~  414 (1486)
T PRK04863        400 ADYQQALDVQQTRAI  414 (1486)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444444443

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=86.24  E-value=10  Score=39.71  Aligned_cols=54  Identities=20%  Similarity=0.263  Sum_probs=46.9

Q ss_pred             hhHHHHHHHHH-HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010285          414 RNILNEISEAI-EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG  467 (513)
Q Consensus       414 ekKLeEV~Ear-e~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d  467 (513)
                      +..|.||-|.. +-+-..++|+.+|.++.-.+..++.+|+++-+.|+++.++..+
T Consensus        83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~e  137 (302)
T PF09738_consen   83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYRE  137 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67788887764 5667789999999999999999999999999999999999866

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PRK02224 chromosome segregation protein; Provisional

Probab=85.96  E-value=18  Score=41.44  Aligned_cols=17  Identities=18%  Similarity=0.356  Sum_probs=7.5

Q ss_pred             chhhhhhHHHHHHHHHH
Q 010285          409 DVDWLRNILNEISEAIE  425 (513)
Q Consensus       409 KVDWLekKLeEV~Eare  425 (513)
                      .++=|+.+++.+....+
T Consensus       490 ~l~~~~~~~e~l~~~~~  506 (880)
T PRK02224        490 EVEEVEERLERAEDLVE  506 (880)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444445554444433

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=85.26  E-value=33  Score=32.17  Aligned_cols=57  Identities=25%  Similarity=0.334  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010285          442 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS  498 (513)
Q Consensus       442 ~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kS  498 (513)
                      ..+...+...+...+++...++++.+.+.++.+.+..+.++......+.+.+.+.++
T Consensus       130 ~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  186 (191)
T PF04156_consen  130 ERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQE  186 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444455555555555566667777777777776666666666655544

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK01156 chromosome segregation protein; Provisional

Probab=85.15  E-value=16  Score=42.22  Aligned_cols=23  Identities=9%  Similarity=0.068  Sum_probs=9.5

Q ss_pred             HHhHHHhcCcchhhhhhHHHHHH
Q 010285          399 VLKDVESAQIDVDWLRNILNEIS  421 (513)
Q Consensus       399 ~L~dLe~aGfKVDWLekKLeEV~  421 (513)
                      .+..++...=++.+++.++.++.
T Consensus       320 ~l~~~e~~~~~~e~~~~~~~e~~  342 (895)
T PRK01156        320 EINKYHAIIKKLSVLQKDYNDYI  342 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444444444443

>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein

Probab=85.08  E-value=30  Score=32.59  Aligned_cols=54  Identities=26%  Similarity=0.365  Sum_probs=33.2

Q ss_pred             chhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcC---cchhhhhhHH
Q 010285          362 SNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQ---IDVDWLRNIL  417 (513)
Q Consensus       362 s~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aG---fKVDWLekKL  417 (513)
                      --..|++|-++.+-||+.|...- .++... |......+.++....   ++-+||+.-|
T Consensus        48 ~dsiK~y~~~vh~pll~~~~~~~-~~~~~~-l~~~~~~~~~vd~~~~a~i~e~~L~~el  104 (204)
T PF04740_consen   48 YDSIKNYFSEVHIPLLQGLILLL-EEYQEA-LKFIKDFQSEVDSSSNAIIDEDFLESEL  104 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHhHHHHHHHHcccccccccHHHHHHHH
Confidence            34677788787777777776554 333333 355555555565433   8888888444

However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=84.98  E-value=9.2  Score=44.09  Aligned_cols=28  Identities=18%  Similarity=0.241  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010285          474 KTKARLSDLELESNRLEQIIQATQSKVT  501 (513)
Q Consensus       474 e~k~RL~~LE~ess~L~k~v~~~kSKV~  501 (513)
                      +|+..|.++.+....|..+|..+|-|++
T Consensus       636 ~~~~EL~~~~~~l~~l~~si~~lk~k~~  663 (717)
T PF10168_consen  636 EFKKELERMKDQLQDLKASIEQLKKKLD  663 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444555554444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=84.56  E-value=17  Score=31.35  Aligned_cols=16  Identities=25%  Similarity=0.509  Sum_probs=9.0

Q ss_pred             chhhhhhHHHHHHHHH
Q 010285          409 DVDWLRNILNEISEAI  424 (513)
Q Consensus       409 KVDWLekKLeEV~Ear  424 (513)
                      ++.|++.-.+.|.+..
T Consensus         3 Dik~ir~n~e~v~~~l   18 (108)
T PF02403_consen    3 DIKLIRENPEEVRENL   18 (108)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHhCHHHHHHHH
Confidence            4456666666665444

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=84.51  E-value=5.4  Score=40.78  Aligned_cols=8  Identities=50%  Similarity=0.734  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 010285          476 KARLSDLE  483 (513)
Q Consensus       476 k~RL~~LE  483 (513)
                      +.|+.+|+
T Consensus       197 ~~r~~ELe  204 (290)
T COG4026         197 KKRWDELE  204 (290)
T ss_pred             HHHHHHhc
Confidence            33333333

>smart00787 Spc7 Spc7 kinetochore protein

Probab=84.36  E-value=33  Score=35.97  Aligned_cols=50  Identities=20%  Similarity=0.273  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHH
Q 010285          442 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ  491 (513)
Q Consensus       442 ~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k  491 (513)
                      ..+.....+++.+..+|.++++++.+...+|++..++..++..+-..+++
T Consensus       211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~  260 (312)
T smart00787      211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK  260 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455566666666666666666666666666666655555555544

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR

Probab=84.03  E-value=15  Score=32.81  Aligned_cols=32  Identities=9%  Similarity=0.245  Sum_probs=21.6

Q ss_pred             hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 010285          386 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN  418 (513)
Q Consensus       386 ~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLe  418 (513)
                      +-.+.++|..+..+.. |++.||-|+=.+.-|+
T Consensus        35 R~Y~~~~l~~l~~I~~-lr~~G~~L~~I~~~l~   66 (118)
T cd04776          35 RVYSRRDRARLKLILR-GKRLGFSLEEIRELLD   66 (118)
T ss_pred             cccCHHHHHHHHHHHH-HHHCCCCHHHHHHHHH
Confidence            5667777776655544 8889998765555444

Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=83.81  E-value=24  Score=36.04  Aligned_cols=19  Identities=26%  Similarity=0.309  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHHhhhhH
Q 010285          471 SVAKTKARLSDLELESNRL  489 (513)
Q Consensus       471 rv~e~k~RL~~LE~ess~L  489 (513)
                      .+.+.+++|.+++.....+
T Consensus       125 ~i~~l~~~~~~~e~~~~e~  143 (239)
T COG1579         125 EIEDLKERLERLEKNLAEA  143 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333444444444433333

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=83.79  E-value=46  Score=32.63  Aligned_cols=13  Identities=15%  Similarity=0.465  Sum_probs=9.3

Q ss_pred             hhHHHHHHHHHHH
Q 010285          363 NSMRAYYLECLCS  375 (513)
Q Consensus       363 ~~lRs~YMn~Ll~  375 (513)
                      ..++.||=++..+
T Consensus        12 ~~iK~YYndIT~~   24 (201)
T PF13851_consen   12 QEIKNYYNDITLN   24 (201)
T ss_pred             HHHHHHHHHHHHH
Confidence            5688899777644

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=83.18  E-value=21  Score=34.93  Aligned_cols=24  Identities=17%  Similarity=0.432  Sum_probs=10.8

Q ss_pred             hHHHhcCcchhhhhhHHHHHHHHH
Q 010285          401 KDVESAQIDVDWLRNILNEISEAI  424 (513)
Q Consensus       401 ~dLe~aGfKVDWLekKLeEV~Ear  424 (513)
                      .++.....++.+|+.+++++....
T Consensus        63 ~~~~~~~~r~~~l~~~i~~~~~~i   86 (302)
T PF10186_consen   63 REIEELRERLERLRERIERLRKRI   86 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444455544444444333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=83.06  E-value=16  Score=42.15  Aligned_cols=150  Identities=17%  Similarity=0.270  Sum_probs=77.0

Q ss_pred             eecchHHHHHHHHhHccc--cc---ccCcccchhHHHHHHHHHHHHHHHHhcchh--hhccHHHHHHHHHHHhHHHhcCc
Q 010285          336 VRASISSILQSIISRYGD--IA---ANCNLESNSMRAYYLECLCSVVQELQSTSL--MQMTKAKVKEMMAVLKDVESAQI  408 (513)
Q Consensus       336 Vl~Sqv~iV~~IFeKHPD--IA---snf~lKs~~lRs~YMn~Ll~LIetL~kspl--~eLS~~dL~ea~~~L~dLe~aGf  408 (513)
                      ..+++...++.||.+-..  |.   ++ +..++.- .-.+++|..-++.|..--+  +++-..+|..-...|....+.++
T Consensus       501 ~~~sF~~~Ik~lL~r~~~qPill~s~~-k~~~p~~-~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql  578 (717)
T PF10168_consen  501 SPPSFEKHIKSLLQRSSSQPILLKSSD-KSSSPSP-QECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQL  578 (717)
T ss_pred             ccchHHHHHHHHhcCCCCCCeecCCCc-cccCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            358888999999986421  22   22 1222222 2245667777777764322  23444555555556665554332


Q ss_pred             -chhhhhhHHHHHHH-HHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHH
Q 010285          409 -DVDWLRNILNEISE-AIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG----LKESVAKTKARLSDL  482 (513)
Q Consensus       409 -KVDWLekKLeEV~E-are~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d----~~erv~e~k~RL~~L  482 (513)
                       +|+=|+.+.+.|.+ +.++.+++..+.++.+.+.++++.+.+.+...+-.|+..|+++++    ++.++..++.+|.++
T Consensus       579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~l  658 (717)
T PF10168_consen  579 KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQL  658 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             12222333333322 224455566666666666666666666665555556666655555    233444444444444


Q ss_pred             HHhhh
Q 010285          483 ELESN  487 (513)
Q Consensus       483 E~ess  487 (513)
                      .++..
T Consensus       659 k~k~~  663 (717)
T PF10168_consen  659 KKKLD  663 (717)
T ss_pred             HHHHH
Confidence            44333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF15112 DUF4559: Domain of unknown function (DUF4559)

Probab=82.70  E-value=49  Score=35.06  Aligned_cols=150  Identities=11%  Similarity=0.133  Sum_probs=79.5

Q ss_pred             hHHHHHHHHhHccccc--ccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHH
Q 010285          340 ISSILQSIISRYGDIA--ANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNIL  417 (513)
Q Consensus       340 qv~iV~~IFeKHPDIA--snf~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKL  417 (513)
                      ....|+.|++=-=+|-  +++++.++.||. |+..|..+..++..-|       ++..|+..+..|...-|.+  ...++
T Consensus       138 d~~~v~eVI~~RN~~MHS~emkvs~~wm~~-~~~~i~nll~~f~~ip-------e~~~a~~~Ie~ll~~d~~v--~~~~~  207 (307)
T PF15112_consen  138 DRKKVREVIKCRNEIMHSSEMKVSSQWMRD-FQMKIQNLLNEFRNIP-------EIVAAGSRIEQLLTSDWAV--HIPEE  207 (307)
T ss_pred             cHHHHHHHHHHHHHhhcCcccccCHHHHHH-HHHHHHHHHHHhccCh-------HHHHHHHHHHHHHhhhhhh--cCchh
Confidence            7778888887666663  556666777775 7788888888877777       6777777777776443332  12333


Q ss_pred             HHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 010285          418 NEISEAIEFSTQHQTIDAAKANCVNLLESTKKELE-----------------SQMNELALKEKEVAGLKESVAKTKARLS  480 (513)
Q Consensus       418 eEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELE-----------------e~leeL~qKekev~d~~erv~e~k~RL~  480 (513)
                      ++.....-..+-+   .+....++..++.++..|+                 ..++-+..-...=+|+++.+.+--..|.
T Consensus       208 d~~Dg~~~~~~~~---~~~~~i~e~e~e~Lke~lqel~~~~e~~~~~~ee~~~~l~~~~~fL~~NkDL~~~l~~e~qkL~  284 (307)
T PF15112_consen  208 DQRDGCESETDVY---LSESQILEIEMELLKEKLQELYLQAEEQEVLPEEDSKRLEVLKEFLRNNKDLRSNLQEELQKLD  284 (307)
T ss_pred             hccchhhhccchh---hhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence            3333222111100   0011111222222222211                 1222333333334455555554446666


Q ss_pred             HHHHhhhhHHHHHHHhhhhhhh
Q 010285          481 DLELESNRLEQIIQATQSKVTK  502 (513)
Q Consensus       481 ~LE~ess~L~k~v~~~kSKV~k  502 (513)
                      .|+.+..+++.-|+.++++|.+
T Consensus       285 ~l~~k~~~~~~~v~~~~~~~~q  306 (307)
T PF15112_consen  285 SLQTKHQKLESDVKELKSQMPQ  306 (307)
T ss_pred             HHHHHhcchhhhhhHHHhhccC
Confidence            6666666666666666666654

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.48  E-value=8.6  Score=41.17  Aligned_cols=59  Identities=24%  Similarity=0.241  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010285          441 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK  502 (513)
Q Consensus       441 e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k  502 (513)
                      ++++++....+..++++|++-+++++.-..++.+++++   ||-+...|.+.++-|++||+.
T Consensus       220 R~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~et---LEqq~~~L~~niDIL~~k~~e  278 (365)
T KOG2391|consen  220 RRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKET---LEQQLQSLQKNIDILKSKVRE  278 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHH---HHHHHHHHHhhhHHHHHHHHH
Confidence            34444444445555667777777777655554444444   455666666677777777765

>PRK02224 chromosome segregation protein; Provisional

Probab=82.47  E-value=22  Score=40.70  Aligned_cols=32  Identities=16%  Similarity=0.166  Sum_probs=16.8

Q ss_pred             HHHHHhHcccccccCcccchhHHHHHHHHHHHH
Q 010285          344 LQSIISRYGDIAANCNLESNSMRAYYLECLCSV  376 (513)
Q Consensus       344 V~~IFeKHPDIAsnf~lKs~~lRs~YMn~Ll~L  376 (513)
                      .+.||-..|+|..=+ -.++.=|...+.=|++|
T Consensus       130 ~~~~~i~Qge~~~~l-~~~p~~R~~ii~~l~~l  161 (880)
T PRK02224        130 VNCAYVRQGEVNKLI-NATPSDRQDMIDDLLQL  161 (880)
T ss_pred             cceeEeeccChHHHH-cCCHHHHHHHHHHHhCC
Confidence            444455566654433 33555555556666654

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=82.26  E-value=36  Score=33.71  Aligned_cols=9  Identities=22%  Similarity=0.246  Sum_probs=3.3

Q ss_pred             chhhhhhHH
Q 010285          409 DVDWLRNIL  417 (513)
Q Consensus       409 KVDWLekKL  417 (513)
                      +|.-++..|
T Consensus       121 kl~~~E~~L  129 (237)
T PF00261_consen  121 KLKVLEQEL  129 (237)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown

Probab=81.77  E-value=27  Score=38.89  Aligned_cols=31  Identities=19%  Similarity=0.248  Sum_probs=25.1

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhcchhhhcc
Q 010285          358 CNLESNSMRAYYLECLCSVVQELQSTSLMQMT  389 (513)
Q Consensus       358 f~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS  389 (513)
                      ..+.|+.+|+.+|+=|+.|--.|.+-- .+++
T Consensus       345 tlLe~~~~R~~fldeL~EL~aFL~qRl-~El~  375 (507)
T PF05600_consen  345 TLLENPETRNQFLDELLELEAFLKQRL-YELS  375 (507)
T ss_pred             hhcCCHhHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence            568899999999999999977776644 5665

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=81.26  E-value=55  Score=33.98  Aligned_cols=61  Identities=23%  Similarity=0.321  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccc
Q 010285          447 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKS  507 (513)
Q Consensus       447 ~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kS  507 (513)
                      ++++|.+.-.++..+.+++.+.+.++.++.+.+..+..+...+...|..+...+++=.+.+
T Consensus       214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t  274 (325)
T PF08317_consen  214 LRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWT  274 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            4555555555555555566666666666666666666666666666666665555444433

>COG3937 Uncharacterized conserved protein [Function unknown]

Probab=81.22  E-value=11  Score=34.33  Aligned_cols=38  Identities=24%  Similarity=0.436  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 010285          449 KELESQMNELA-LKEKEVAGLKESVAKTKARLSDLELES  486 (513)
Q Consensus       449 kELEe~leeL~-qKekev~d~~erv~e~k~RL~~LE~es  486 (513)
                      +.|+.++.++. ..+++|.+.++||.+.+.++..||.+.
T Consensus        68 r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~  106 (108)
T COG3937          68 RKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKL  106 (108)
T ss_pred             HHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555554444 334566777788888888888887664

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=81.12  E-value=38  Score=40.87  Aligned_cols=101  Identities=14%  Similarity=0.166  Sum_probs=57.7

Q ss_pred             EEeccEEeecchHHHHHHHHhH------------cccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHH
Q 010285          329 VSVGKYHVRASISSILQSIISR------------YGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEM  396 (513)
Q Consensus       329 V~VnGFqVl~Sqv~iV~~IFeK------------HPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea  396 (513)
                      ..|||-.|..+   -+..+|..            -|+|..=...+....|. |++=..++...-..      -+.=....
T Consensus       112 Y~INg~~~~~~---dI~~l~~~~gi~~~~~~iV~QG~V~~i~~~kp~err~-iiEEaaGv~~y~~r------~~ea~~~L  181 (1163)
T COG1196         112 YYINGEKVRLK---DIQDLLADSGIGKESYSIVSQGKVEEIINAKPEERRK-LIEEAAGVSKYKER------KEEAERKL  181 (1163)
T ss_pred             EEECCcEeeHH---HHHHHHHhcCCCCCCCceeecccHHHHHcCCHHHHHH-HHHHHhchHHHHHH------HHHHHHHH
Confidence            67777777766   23333332            24444444455555555 66666665543221      11222222


Q ss_pred             HHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHh
Q 010285          397 MAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKAN  439 (513)
Q Consensus       397 ~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~  439 (513)
                      ..+..-|......++=|+++|+.+...++.+..|++++.++..
T Consensus       182 ~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~  224 (1163)
T COG1196         182 ERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRE  224 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444466678888888888888888888888887653

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=81.05  E-value=17  Score=43.74  Aligned_cols=56  Identities=25%  Similarity=0.285  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 010285          442 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ  497 (513)
Q Consensus       442 ~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~k  497 (513)
                      .-++.+++++|...+.++++.++..++++.+.++.+++...+.+...|.+.+.+..
T Consensus       401 ~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~  456 (1074)
T KOG0250|consen  401 NKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS  456 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344433333333334444444444555555555555555555555554444

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=80.82  E-value=24  Score=39.82  Aligned_cols=17  Identities=24%  Similarity=0.487  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHhhhh
Q 010285          472 VAKTKARLSDLELESNR  488 (513)
Q Consensus       472 v~e~k~RL~~LE~ess~  488 (513)
                      .+++..|+.+||.....
T Consensus       215 ~~e~~~ri~~LEedi~~  231 (546)
T PF07888_consen  215 LAEARQRIRELEEDIKT  231 (546)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344444444433333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK04863 mukB cell division protein MukB; Provisional

Probab=80.37  E-value=31  Score=43.10  Aligned_cols=42  Identities=19%  Similarity=0.197  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhh
Q 010285          447 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNR  488 (513)
Q Consensus       447 ~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~  488 (513)
                      .+.++++...++...++++.+++.++.+....+..++.+...
T Consensus       374 leeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q  415 (1486)
T PRK04863        374 ADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQ  415 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333444444333333333333333333333

>TIGR00634 recN DNA repair protein RecN

Probab=80.14  E-value=22  Score=39.30  Aligned_cols=93  Identities=16%  Similarity=0.129  Sum_probs=55.7

Q ss_pred             eEEeccEEeecchH-HHHHHHHhHcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHH---
Q 010285          328 SVSVGKYHVRASIS-SILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDV---  403 (513)
Q Consensus       328 tV~VnGFqVl~Sqv-~iV~~IFeKHPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL---  403 (513)
                      ...|||-.|..+.+ .+.+.++.-||.... ..+-++..+-.+|+-+.++.+.+...  +.+ -.++.++...|..+   
T Consensus       108 ~~~iNg~~v~~~~l~~l~~~li~i~gQ~~~-~~l~~~~~~~~lLD~~~~~~~~~~~~--~~~-~~~~~~~~~~L~~l~~~  183 (563)
T TIGR00634       108 RAYLNGKPVSASSLLEFTSELLDLHGQHDQ-QLLFRPDEQRQLLDTFAGANEKVKAY--REL-YQAWLKARQQLKDRQQK  183 (563)
T ss_pred             EEEECCEEccHHHHHHHhcCeEEEECchHH-HHhcCHHHHHHHHHHhcCchHHHHHH--HHH-HHHHHHHHHHHHHHHhh
Confidence            47899988866554 333334555888864 44557777777888777743322222  222 45555555555555   


Q ss_pred             -HhcCcchhhhhhHHHHHHHHH
Q 010285          404 -ESAQIDVDWLRNILNEISEAI  424 (513)
Q Consensus       404 -e~aGfKVDWLekKLeEV~Ear  424 (513)
                       +...=+++||+-.|+||..+.
T Consensus       184 ~~~~~~eld~L~~ql~ELe~~~  205 (563)
T TIGR00634       184 EQELAQRLDFLQFQLEELEEAD  205 (563)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCC
Confidence             334556778888877776444

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=80.08  E-value=38  Score=34.68  Aligned_cols=40  Identities=10%  Similarity=0.221  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 010285          473 AKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI  512 (513)
Q Consensus       473 ~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~l  512 (513)
                      .+...+|.+++.+...+...+..++..+.+..-.+.+||.
T Consensus       242 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~  281 (423)
T TIGR01843       242 EEVLEELTEAQARLAELRERLNKARDRLQRLIIRSPVDGT  281 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCCCcE
Confidence            3445556666666666666677777777777777777775

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	513
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 4e-09
 Identities = 49/386 (12%), Positives = 103/386 (26%), Gaps = 117/386 (30%)

Query: 174 LTPRAVDKVAVGGQKANGQHARS-----ENYPKKKVESENGKSFSRPEHFSREIHPEDHS 228
           L+   +D +     K              +  ++ V+            F  E+   ++ 
Sbjct: 46  LSKEEIDHII--MSKDAVSGTLRLFWTLLSKQEEMVQK-----------FVEEVLRINYK 92

Query: 229 LNKEKVRSTQSVPPSENIKM---------NDMSKSPP-----KESVTSLPGA----SPSK 270
                ++ T+   PS   +M         ND            +    L  A     P+K
Sbjct: 93  FLMSPIK-TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 271 NGKDNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGID-LASGDSDDEEAQSVISDSV 329
           N         + I       G               SG   +A       + Q  +   +
Sbjct: 152 N---------VLIDG---VLG---------------SGKTWVALDVCLSYKVQCKMDFKI 184

Query: 330 ---SVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLM 386
              ++   +   ++  +LQ ++ +   I  N    S+      L         +Q+    
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQ---IDPNWTSRSDHSSNIKLRI-----HSIQAELRR 236

Query: 387 QMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTI----DAAKANCVN 442
            +     +  + VL +V++A+    W          A  F+   + +         + ++
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKA---W---------NA--FNLSCKILLTTRFKQVTDFLS 282

Query: 443 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES---------------- 486
              +T   +    + + L   EV  L       +    DL  E                 
Sbjct: 283 --AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP--QDLPREVLTTNPRRLSIIAESIR 338

Query: 487 ---NRLEQIIQATQSKVTKFSQKSLA 509
                 +        K+T   + SL 
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLN 364

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	513
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.62
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	90.95
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	90.78
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	89.77
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	89.2
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	88.99
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	87.51
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	87.1
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	86.92
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	86.77
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	84.64
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	83.23
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	82.41
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	81.38
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	81.23
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	80.91
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	80.1

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.62  E-value=0.92  Score=46.98  Aligned_cols=57  Identities=18%  Similarity=0.270  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010285          444 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV  500 (513)
Q Consensus       444 ~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV  500 (513)
                      ....+++++++.+++...++++.+++.+++++++++.++..+.+.+.+-+..+..|+
T Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~  581 (597)
T 3oja_B          525 TQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK  581 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333444455555666666677777777888888888888877777655544444443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=90.95  E-value=1.8  Score=49.95  Aligned_cols=62  Identities=18%  Similarity=0.212  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010285          441 VNLLESTKKELESQMNELALKEKEVAGLKESV----AKTKARLSDLELESNRLEQIIQATQSKVTK  502 (513)
Q Consensus       441 e~~~e~~kkELEe~leeL~qKekev~d~~erv----~e~k~RL~~LE~ess~L~k~v~~~kSKV~k  502 (513)
                      +..+..+.+|+++.-+++....+|.++..++.    .++.+.+..|+.+...|.+.+.++.+.+.+
T Consensus       983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A          983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444433333    245577777888888888888888765443

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=90.78  E-value=3.7  Score=36.32  Aligned_cols=19  Identities=32%  Similarity=0.335  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHhhhhH
Q 010285          471 SVAKTKARLSDLELESNRL  489 (513)
Q Consensus       471 rv~e~k~RL~~LE~ess~L  489 (513)
                      ++..+..++..++.+...+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~  102 (284)
T 1c1g_A           84 DVASLNRRIQLFEEELDRA  102 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=89.77  E-value=3.6  Score=36.98  Aligned_cols=52  Identities=21%  Similarity=0.208  Sum_probs=25.5

Q ss_pred             hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010285          432 TIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE  483 (513)
Q Consensus       432 ~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE  483 (513)
                      .++...+..++.+..++.+|.+...++....+++.++++++.++..++++||
T Consensus        79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A           79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444445555544444555555555555555555555555554

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=89.20  E-value=6.8  Score=50.21  Aligned_cols=22  Identities=23%  Similarity=0.312  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHhcchhhhcc
Q 010285          367 AYYLECLCSVVQELQSTSLMQMT  389 (513)
Q Consensus       367 s~YMn~Ll~LIetL~kspl~eLS  389 (513)
                      +.||+.|-.-...|.+.- ++|.
T Consensus      1895 ~syLeli~~y~~ll~~K~-~el~ 1916 (3245)
T 3vkg_A         1895 RHYLDFINQVVLLINEKR-DQLE 1916 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHH
Confidence            346666665555555444 4443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=88.99  E-value=4.4  Score=36.44  Aligned_cols=69  Identities=12%  Similarity=0.126  Sum_probs=44.6

Q ss_pred             hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010285          426 FSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ  494 (513)
Q Consensus       426 ~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~  494 (513)
                      +++.+-.+..+-+..+..++.+.+|+...-++|...+-+.......+.+.+.++..|+.+..+|+..+.
T Consensus        66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~  134 (138)
T 3hnw_A           66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN  134 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444555566666666677776666677766666666677777777777777777777665443

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=87.51  E-value=5.1  Score=40.59  Aligned_cols=68  Identities=21%  Similarity=0.275  Sum_probs=31.4

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 010285          409 DVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELE  485 (513)
Q Consensus       409 KVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~e  485 (513)
                      ...||+++|+|+....      .+++.+-..|-+.+-++..-||.+   .+|-++.+++...+|++....|.+++.+
T Consensus       398 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (471)
T 3mq9_A          398 VTHLLQQELTEAQKGF------QDVEAQAATANHTVMALMASLDAE---KAQGQKKVEELEGEITTLNHKLQDASAE  465 (471)
T ss_dssp             HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhH------HHHHHHhhhcchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466777777665544      233333334445444444444322   3444444444444444444444444333

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=87.10  E-value=3.3  Score=44.02  Aligned_cols=52  Identities=13%  Similarity=0.073  Sum_probs=17.7

Q ss_pred             EEeccEEeecchHHHH-HHHHhHcccccccCcccchhHHHHHHHHHHHHHHHHh
Q 010285          329 VSVGKYHVRASISSIL-QSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQ  381 (513)
Q Consensus       329 V~VnGFqVl~Sqv~iV-~~IFeKHPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~  381 (513)
                      |+-+||+++|..++.- ++=.+++.--|-+|+.-++.|=++|=. =|.|-++|.
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~c~~~~~~~G~~CPT-tC~l~D~L~   92 (464)
T 1m1j_B           40 ISGTGYQPRPPKQDKQAMKKGPIIYPDAGGCKHPLDELGVLCPT-GCELQTTLL   92 (464)
T ss_dssp             -----------------------CCCCCSCEECSSTTTCEEEEC-TTHHHHHHH
T ss_pred             cCCCCcCCCCCCCcchhhccCcccCCCCCCccccCCCccCcCCC-ccHHHHHHH
Confidence            6689999999888775 444555555677777766655544422 366666665

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=86.92  E-value=3.8  Score=39.27  Aligned_cols=44  Identities=18%  Similarity=0.160  Sum_probs=19.0

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010285          457 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV  500 (513)
Q Consensus       457 eL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV  500 (513)
                      ++....+++...+.++..+.+++.++......+...+..++.++
T Consensus        91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l  134 (256)
T 3na7_A           91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM  134 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444444333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=86.77  E-value=11  Score=36.12  Aligned_cols=21  Identities=14%  Similarity=0.194  Sum_probs=7.6

Q ss_pred             HHHHHHHHhhhHHHHHHHHHH
Q 010285          458 LALKEKEVAGLKESVAKTKAR  478 (513)
Q Consensus       458 L~qKekev~d~~erv~e~k~R  478 (513)
                      +..+++++.+...++.+.+++
T Consensus       120 ie~~~~~l~~~~~~l~~~~~~  140 (256)
T 3na7_A          120 IKRKSEKQEDLKKEMLELEKL  140 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=83.23  E-value=11  Score=30.52  Aligned_cols=66  Identities=17%  Similarity=0.218  Sum_probs=39.7

Q ss_pred             hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010285          430 HQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK  502 (513)
Q Consensus       430 ~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k  502 (513)
                      .++++.++++.....+.+..+++..-+.+.+.+.++       ..+.-|+..||.+.-+....+..+..|++.
T Consensus         8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev-------~~L~kKiq~lE~eld~~ee~l~~a~~kLee   73 (81)
T 1ic2_A            8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDEL-------VALQKKLKGTEDELDKYSESLKDAQEKLEL   73 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355566666655555555555555544444444444       446666677777777776677667666654

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=82.41  E-value=15  Score=31.05  Aligned_cols=17  Identities=18%  Similarity=0.223  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHhhhhHHH
Q 010285          475 TKARLSDLELESNRLEQ  491 (513)
Q Consensus       475 ~k~RL~~LE~ess~L~k  491 (513)
                      ...++..+|.+...|..
T Consensus        77 ~ek~~~~aE~ev~~L~R   93 (101)
T 3u1c_A           77 AEENAAKAESEVASLNR   93 (101)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=81.38  E-value=3  Score=42.98  Aligned_cols=59  Identities=10%  Similarity=0.169  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010285          445 ESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF  503 (513)
Q Consensus       445 e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF  503 (513)
                      ..++.||+...+++.++++++++++.++.++.++|.+.+.++-+|.-.+.++|.+|+=|
T Consensus         6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~   64 (403)
T 4etp_A            6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVY   64 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence            34455555555566666777777777888899999999999999999999999887655

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=81.23  E-value=3.5  Score=47.63  Aligned_cols=10  Identities=30%  Similarity=0.318  Sum_probs=4.6

Q ss_pred             HHHHHHHHHH
Q 010285           22 CGMACLEKIA   31 (513)
Q Consensus        22 C~~~C~~ki~   31 (513)
                      |.-||-+|+.
T Consensus       453 cINy~NEkLQ  462 (1080)
T 2dfs_A          453 CINYANEKLQ  462 (1080)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHhhhHHHH
Confidence            4444444443

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=80.91  E-value=12  Score=40.73  Aligned_cols=81  Identities=11%  Similarity=0.211  Sum_probs=37.8

Q ss_pred             HHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHH
Q 010285          373 LCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELE  452 (513)
Q Consensus       373 Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELE  452 (513)
                      |...|++|.+.- .+| ..--.++++....+.      +=|+.+|....+....+.++.      +.+++.+..++.+|.
T Consensus        62 ltkrINELKnqL-Edl-sKnsKdseqy~k~~~------E~Lr~rq~q~~dNdNtynE~S------~ELRRrIqyLKekVd  127 (562)
T 3ghg_A           62 FTNRINKLKNSL-FEY-QKNNKDSHSLTTNIM------EILRGDFSSANNRDNTYNRVS------EDLRSRIEVLKRKVI  127 (562)
T ss_dssp             HHHHHHHHHHHH-THH-HHHHHHHHHHHHHHH------HTTSSHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHH-HhhchhHHHHHHHHH------HHHHHHHHhhhccchhHHHHH------HHHHHHHHHHHHHHH
Confidence            344455554444 444 333344444444444      556666666665554333333      123444444555555


Q ss_pred             HHHHHHHHHHHHHhh
Q 010285          453 SQMNELALKEKEVAG  467 (513)
Q Consensus       453 e~leeL~qKekev~d  467 (513)
                      .++..|+.++.-|.+
T Consensus       128 nQlsnIrvLQsnLed  142 (562)
T 3ghg_A          128 EKVQHIQLLQKNVRA  142 (562)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            554444444443333

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}

Probab=80.10  E-value=14  Score=39.30  Aligned_cols=40  Identities=13%  Similarity=0.141  Sum_probs=24.8

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010285          464 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF  503 (513)
Q Consensus       464 ev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF  503 (513)
                      ++.++++++.+++++|.+|+.+...++..+..+=..+=+.
T Consensus       117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~  156 (501)
T 1wle_A          117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQ  156 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            3344566667777777777777777766665554444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	513
d1cqxa1	150	Flavohemoglobin, N-terminal domain {Alcaligenes eu	90.47
d1gvha1	146	Flavohemoglobin, N-terminal domain {Escherichia co	83.02
d1asha_	147	Ascaris hemoglobin, domain 1 {Pig roundworm (Ascar	81.89

>d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}

class: All alpha proteins
fold: Globin-like
superfamily: Globin-like
family: Globins
domain: Flavohemoglobin, N-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=90.47  E-value=2  Score=35.47  Aligned_cols=44  Identities=5%  Similarity=0.134  Sum_probs=33.4

Q ss_pred             HHHHHHHHhHcccccccCcccchhHHH---HHHHHHHHHHHHHhcch
Q 010285          341 SSILQSIISRYGDIAANCNLESNSMRA---YYLECLCSVVQELQSTS  384 (513)
Q Consensus       341 v~iV~~IFeKHPDIAsnf~lKs~~lRs---~YMn~Ll~LIetL~ksp  384 (513)
                      ..+-.++|+.||++-.-|...++.+++   .+|..|..+|+.|....
T Consensus        26 ~~ff~rlF~~~P~~~~~F~~~~~~~~~h~~~~~~~l~~~V~~Ld~~~   72 (150)
T d1cqxa1          26 KCFYQRMFEAHPELKNVFNMAHQEQGQQQQALARAVYAYAENIEDPN   72 (150)
T ss_dssp             HHHHHHHHHHCGGGGGTSCCSCCCHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHCHhHHHHhhhhhhhhHHHHHHHHHHHHHHHHhccCHH
Confidence            345577899999999999877766555   57888888888776543

>d1gvha1 a.1.1.2 (A:1-146) Flavohemoglobin, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Globin-like
superfamily: Globin-like
family: Globins
domain: Flavohemoglobin, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.02  E-value=5.9  Score=32.34  Aligned_cols=91  Identities=9%  Similarity=0.133  Sum_probs=52.3

Q ss_pred             HHHHHHHhHcccccccCcccchhHH---HHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 010285          342 SILQSIISRYGDIAANCNLESNSMR---AYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN  418 (513)
Q Consensus       342 ~iV~~IFeKHPDIAsnf~lKs~~lR---s~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLe  418 (513)
                      .+-.++|+.||++-.=|...++.++   ..+|..|-.+|+.|.++.  .|. .-|......=   ..-|++-+....--+
T Consensus        27 ~fy~rlF~~~P~~k~lF~~~~~~~~~h~~~~~~~l~~~v~~Ldd~~--~l~-~~l~~Lg~~H---~~~gv~~~~f~~~~~  100 (146)
T d1gvha1          27 HFYDRMFTHNPELKEIFNMSNQRNGDQREALFNAIAAYASNIENLP--ALL-PAVEKIAQKH---TSFQIKPEQYNIVGE  100 (146)
T ss_dssp             HHHHHHHHHCGGGGGTSCCCTTCCSHHHHHHHHHHHHHHTTGGGGG--GGH-HHHHHHHHHH---HHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHCHHHHHHhhhcchhhHHHHHHHHHHHHHHHHhccchh--hHH-HHHHHHHHHH---HhCCCCHHHHHHHHH
Confidence            3467889999999999987776543   368899999998887654  221 1122211111   234777766655444


Q ss_pred             HHHHHH-HhhhhhhhHHHHHH
Q 010285          419 EISEAI-EFSTQHQTIDAAKA  438 (513)
Q Consensus       419 EV~Ear-e~~~~~~~le~eKd  438 (513)
                      -+.+.. +.+.-...+++++.
T Consensus       101 ~ll~~l~~~lg~~~e~~~AW~  121 (146)
T d1gvha1         101 HLLATLDEMFSPGQEVLDAWG  121 (146)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHH
Confidence            444433 22333333344443

>d1asha_ a.1.1.2 (A:) Ascaris hemoglobin, domain 1 {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: All alpha proteins
fold: Globin-like
superfamily: Globin-like
family: Globins
domain: Ascaris hemoglobin, domain 1
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=81.89  E-value=3.5  Score=34.12  Aligned_cols=75  Identities=8%  Similarity=0.168  Sum_probs=48.2

Q ss_pred             HHHHHHHHhHcccccccCcc----------cchhHH---HHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHh-c
Q 010285          341 SSILQSIISRYGDIAANCNL----------ESNSMR---AYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES-A  406 (513)
Q Consensus       341 v~iV~~IFeKHPDIAsnf~l----------Ks~~lR---s~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~-a  406 (513)
                      +.+..++|++|||+-.-|.-          .|+.|+   ..+|+.|-.+|..|....       .|......|..-=. .
T Consensus        28 ~~~f~~LF~~~P~~k~~F~~f~~~~~~~l~~s~~~~~h~~rv~~~l~~~V~~Ldd~~-------~l~~~l~~Lg~~H~~r  100 (147)
T d1asha_          28 IDLYKHMFENYPPLRKYFKSREEYTAEDVQNDPFFAKQGQKILLACHVLCATYDDRE-------TFNAYTRELLDRHARD  100 (147)
T ss_dssp             HHHHHHHHHHCGGGGGGSTTTTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHTTTSHH-------HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCHHHHHhccccccCCHHHhccCHHHHHHHHHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHHhccc
Confidence            68999999999999998862          466666   467888888888775433       44444444444432 3


Q ss_pred             Ccchh---h--hhhHHHHHHH
Q 010285          407 QIDVD---W--LRNILNEISE  422 (513)
Q Consensus       407 GfKVD---W--LekKLeEV~E  422 (513)
                      |+.++   |  +..-|.++.+
T Consensus       101 ~v~v~~~~f~~~~~~l~~~l~  121 (147)
T d1asha_         101 HVHMPPEVWTDFWKLFEEYLG  121 (147)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHH
Confidence            55544   2  4445554443