Citrus Sinensis ID: 010317
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 513 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZ80 | 539 | Polyol transporter 5 OS=A | yes | no | 0.937 | 0.892 | 0.553 | 1e-149 | |
| Q9XIH7 | 511 | Putative polyol transport | no | no | 0.927 | 0.931 | 0.529 | 1e-144 | |
| Q8GXR2 | 493 | Probable polyol transport | no | no | 0.941 | 0.979 | 0.523 | 1e-142 | |
| Q9XIH6 | 511 | Putative polyol transport | no | no | 0.947 | 0.951 | 0.514 | 1e-142 | |
| Q9ZNS0 | 508 | Probable polyol transport | no | no | 0.906 | 0.915 | 0.528 | 1e-134 | |
| Q0WUU6 | 526 | Probable polyol transport | no | no | 0.916 | 0.893 | 0.473 | 1e-129 | |
| C0SPB2 | 457 | Putative metabolite trans | yes | no | 0.838 | 0.940 | 0.334 | 8e-65 | |
| O52733 | 457 | D-xylose-proton symporter | yes | no | 0.859 | 0.964 | 0.326 | 7e-62 | |
| O34718 | 473 | Major myo-inositol transp | no | no | 0.900 | 0.976 | 0.327 | 9e-62 | |
| P46333 | 461 | Probable metabolite trans | no | no | 0.886 | 0.986 | 0.311 | 5e-59 |
| >sp|Q8VZ80|PLT5_ARATH Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 529 bits (1363), Expect = e-149, Method: Compositional matrix adjust.
Identities = 269/486 (55%), Positives = 349/486 (71%), Gaps = 5/486 (1%)
Query: 27 NKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLA 86
N YAF CA+LAS+ SILLGYDIGVMSGA++YIK DL+I ++Q+ +L G LN++SLIGS A
Sbjct: 33 NNYAFACAILASMTSILLGYDIGVMSGAMIYIKRDLKINDLQIGILAGSLNIYSLIGSCA 92
Query: 87 SGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTA 146
+G+TSD+IGRRYTIV+A A F GA+ MGL+PNY FL+ GR IAGIGVGY+LMI+PVYTA
Sbjct: 93 AGRTSDWIGRRYTIVLAGAIFFAGAILMGLSPNYAFLMFGRFIAGIGVGYALMIAPVYTA 152
Query: 147 EISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGV 206
E+SP RGFL S PEVFI GI+ GYV N A S LP + WR+MLG+ AVP+ ++ +GV
Sbjct: 153 EVSPASSRGFLNSFPEVFINAGIMLGYVSNLAFSNLPLKVGWRLMLGIGAVPSVILAIGV 212
Query: 207 LIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPK 266
L MPESPRWLVM+ R +AKRVL K SD+ EA RL+D IK A DD +
Sbjct: 213 LAMPESPRWLVMQGRLGDAKRVLDKTSDSPTEATLRLED-IKHAAGIPADCHDDVVQVSR 271
Query: 267 GNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPV 326
N GEGVW++L+++PTPAVRR++IAA+GI+FF QASG DAV+ ++P +FK AG+
Sbjct: 272 RNSHGEGVWRELLIRPTPAVRRVMIAAIGIHFFQQASGIDAVVLFSPRIFKTAGLKTDHQ 331
Query: 327 LFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTV 386
V +G+ KT F++++ LD+ GRRPLLL GMV SL LG I++ S V
Sbjct: 332 QLLATVAVGVVKTSFILVATFLLDRIGRRPLLLTSVGGMVLSLAALGTSLTIIDQSEKKV 391
Query: 387 V--VVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMT 444
+ VV+ I V +V+ FSIG GPITWVYSSEIFPLRLR+QGS++ + VNR+ SGVIS++
Sbjct: 392 MWAVVVAIATVMTYVATFSIGAGPITWVYSSEIFPLRLRSQGSSMGVVVNRVTSGVISIS 451
Query: 445 FLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEEMQALFGG--DNDDTSRDE 502
FL +S ++ GG F+L GI TV +FFY FLPET+G+ LE+M LF G D S+ +
Sbjct: 452 FLPMSKAMTTGGAFYLFGGIATVAWVFFYTFLPETQGRMLEDMDELFSGFRWRDSKSKPK 511
Query: 503 NEKQQT 508
++T
Sbjct: 512 GNPEKT 517
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Plasma membrane broad-spectrum sugar-proton symporter. Mediates the uptake of linear polyols such as sorbitol, xylitol, erythritol or glycerol. Can transport the cyclic polyol myo-inositol and different hexoses, pentoses (including ribose), tetroses and sugar alcohols. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIH7|PLT1_ARATH Putative polyol transporter 1 OS=Arabidopsis thaliana GN=PLT1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 511 bits (1315), Expect = e-144, Method: Compositional matrix adjust.
Identities = 257/485 (52%), Positives = 343/485 (70%), Gaps = 9/485 (1%)
Query: 27 NKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLA 86
++YAF CA+LAS+ SI+LGYDIGVMSGA ++IK+DL++++VQ+E+L+GILN++SL+GS A
Sbjct: 23 SRYAFACAILASMTSIILGYDIGVMSGASIFIKDDLKLSDVQLEILMGILNIYSLVGSGA 82
Query: 87 SGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTA 146
+G+TSD++GRRYTIV+A A F GAL MG A NYPF++VGR +AGIGVGY++MI+PVYTA
Sbjct: 83 AGRTSDWLGRRYTIVLAGAFFFCGALLMGFATNYPFIMVGRFVAGIGVGYAMMIAPVYTA 142
Query: 147 EISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGV 206
E++P RGFLTS PE+FI +GIL GYV NY S LP ++ WR MLG+ AVP+ + +GV
Sbjct: 143 EVAPASSRGFLTSFPEIFINIGILLGYVSNYFFSKLPEHLGWRFMLGVGAVPSVFLAIGV 202
Query: 207 LIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPK 266
L MPESPRWLV++ R +A +VL K S+T++EA RLDD IK A DD P
Sbjct: 203 LAMPESPRWLVLQGRLGDAFKVLDKTSNTKEEAISRLDD-IKRAVGIPDDMTDDVIVVPN 261
Query: 267 GNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPV 326
G+GVWKDL+++PTP+VR +LIA +GI+F QASG DAV+ Y+P +F AG+ K
Sbjct: 262 KKSAGKGVWKDLLVRPTPSVRHILIACLGIHFAQQASGIDAVVLYSPTIFSKAGLKSKND 321
Query: 327 LFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILE---GST 383
V +G+ KT F+V+ +D+FGRR LLL GM SL LG ++ G T
Sbjct: 322 QLLATVAVGVVKTLFIVVGTCVVDRFGRRALLLTSMGGMFLSLTALGTSLTVINRNPGQT 381
Query: 384 PTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISM 443
+ L + V FV+ FSIG GP+TWVY SEIFP+RLRAQG++L + +NRL+SG+I M
Sbjct: 382 LKWAIGLAVTTVMTFVATFSIGAGPVTWVYCSEIFPVRLRAQGASLGVMLNRLMSGIIGM 441
Query: 444 TFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEEMQALFGG-----DNDDT 498
TFLS+S L+ GG F L AG+ +FF+ FLPET+G LEEM+ LFG N+
Sbjct: 442 TFLSLSKGLTIGGAFLLFAGVAAAAWVFFFTFLPETRGIPLEEMETLFGSYTANKKNNSM 501
Query: 499 SRDEN 503
S+D
Sbjct: 502 SKDNE 506
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Plasma membrane sugar-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GXR2|PLT6_ARATH Probable polyol transporter 6 OS=Arabidopsis thaliana GN=PLT6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust.
Identities = 255/487 (52%), Positives = 349/487 (71%), Gaps = 4/487 (0%)
Query: 19 TGRQKKGLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNV 78
+G + G+N++A CA++ASI SI+ GYD GVMSGA+++I+EDL+ +VQ+EVL GILN+
Sbjct: 6 SGEKPAGVNRFALQCAIVASIVSIIFGYDTGVMSGAMVFIEEDLKTNDVQIEVLTGILNL 65
Query: 79 FSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSL 138
+L+GSL +G+TSD IGRRYTIV+A+ F++G++ MG PNYP L+ GR AG+GVG++L
Sbjct: 66 CALVGSLLAGRTSDIIGRRYTIVLASILFMLGSILMGWGPNYPVLLSGRCTAGLGVGFAL 125
Query: 139 MISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVP 198
M++PVY+AEI+ RG L SLP + I +GIL GY+ NY S LP +I WR+MLG+AAVP
Sbjct: 126 MVAPVYSAEIATASHRGLLASLPHLCISIGILLGYIVNYFFSKLPMHIGWRLMLGIAAVP 185
Query: 199 AAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGP 258
+ V+ G+L MPESPRWL+M+ R E K +L VS++ +EA+ R D IKAA P
Sbjct: 186 SLVLAFGILKMPESPRWLIMQGRLKEGKEILELVSNSPEEAELRFQD-IKAAAGIDPKCV 244
Query: 259 DDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKG 318
DD GEGVWK+LIL+PTPAVRR+L+ A+GI+FF ASG +AV+ Y P +FK
Sbjct: 245 DDVVKMEGKKTHGEGVWKELILRPTPAVRRVLLTALGIHFFQHASGIEAVLLYGPRIFKK 304
Query: 319 AGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKI 378
AGI K LF + + +G+ KT F+ + L LDK GRR LLL GMV +L +LG G +
Sbjct: 305 AGITTKDKLFLVTIGVGIMKTTFIFTATLLLDKVGRRKLLLTSVGGMVIALTMLGFGLTM 364
Query: 379 LE--GSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRL 436
+ G +VL I+A +FV+FFSIGLGPITWVYSSE+FPL+LRAQG++L ++VNR+
Sbjct: 365 AQNAGGKLAWALVLSIVAAYSFVAFFSIGLGPITWVYSSEVFPLKLRAQGASLGVAVNRV 424
Query: 437 VSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEEMQALFGGDND 496
++ +SM+FLS++ ++ GG FF+ AG+ V FF+ LPETKGK+LEE++ALF D D
Sbjct: 425 MNATVSMSFLSLTSAITTGGAFFMFAGVAAVAWNFFFFLLPETKGKSLEEIEALFQRDGD 484
Query: 497 DTSRDEN 503
R EN
Sbjct: 485 KV-RGEN 490
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Plasma membrane sugar-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIH6|PLT2_ARATH Putative polyol transporter 2 OS=Arabidopsis thaliana GN=PLT2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 505 bits (1300), Expect = e-142, Method: Compositional matrix adjust.
Identities = 252/490 (51%), Positives = 346/490 (70%), Gaps = 4/490 (0%)
Query: 27 NKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLA 86
+++AF CA+LAS+ SI+LGYDIGVMSGA ++IK+DL++++VQ+E+L+GILN++SLIGS A
Sbjct: 23 SRFAFACAILASMTSIILGYDIGVMSGAAIFIKDDLKLSDVQLEILMGILNIYSLIGSGA 82
Query: 87 SGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTA 146
+G+TSD+IGRRYTIV+A F GAL MG A NYPF++VGR +AGIGVGY++MI+PVYT
Sbjct: 83 AGRTSDWIGRRYTIVLAGFFFFCGALLMGFATNYPFIMVGRFVAGIGVGYAMMIAPVYTT 142
Query: 147 EISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGV 206
E++P RGFL+S PE+FI +GIL GYV NY + LP +I WR MLG+ AVP+ + +GV
Sbjct: 143 EVAPASSRGFLSSFPEIFINIGILLGYVSNYFFAKLPEHIGWRFMLGIGAVPSVFLAIGV 202
Query: 207 LIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPK 266
L MPESPRWLVM+ R +A +VL K S+T++EA RL+D IK A DD P
Sbjct: 203 LAMPESPRWLVMQGRLGDAFKVLDKTSNTKEEAISRLND-IKRAVGIPDDMTDDVIVVPN 261
Query: 267 GNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPV 326
G+GVWKDL+++PTP+VR +LIA +GI+F QASG DAV+ Y+P +F AG+ K
Sbjct: 262 KKSAGKGVWKDLLVRPTPSVRHILIACLGIHFSQQASGIDAVVLYSPTIFSRAGLKSKND 321
Query: 327 LFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILE---GST 383
V +G+ KT F+V+ +D+FGRR LLL GM SL LG +++ G T
Sbjct: 322 QLLATVAVGVVKTLFIVVGTCLVDRFGRRALLLTSMGGMFFSLTALGTSLTVIDRNPGQT 381
Query: 384 PTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISM 443
+ L + V FV+ FS+G GP+TWVY+SEIFP+RLRAQG++L + +NRL+SG+I M
Sbjct: 382 LKWAIGLAVTTVMTFVATFSLGAGPVTWVYASEIFPVRLRAQGASLGVMLNRLMSGIIGM 441
Query: 444 TFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEEMQALFGGDNDDTSRDEN 503
TFLS+S L+ GG F L AG+ +FF+ FLPET+G LEE+++LFG + + +
Sbjct: 442 TFLSLSKGLTIGGAFLLFAGVAVAAWVFFFTFLPETRGVPLEEIESLFGSYSANKKNNVM 501
Query: 504 EKQQTETSEK 513
K + E+
Sbjct: 502 SKGKQVVDEQ 511
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Plasma membrane sugar-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZNS0|PLT3_ARATH Probable polyol transporter 3 OS=Arabidopsis thaliana GN=PLT3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 479 bits (1234), Expect = e-134, Method: Compositional matrix adjust.
Identities = 247/467 (52%), Positives = 339/467 (72%), Gaps = 2/467 (0%)
Query: 26 LNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSL 85
+NK+AF CA++ASI SI+ GYD GVMSGA ++I++DL+I + Q+EVL GILN+ +L+GSL
Sbjct: 18 MNKFAFGCAIVASIISIIFGYDTGVMSGAQIFIRDDLKINDTQIEVLAGILNLCALVGSL 77
Query: 86 ASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYT 145
+GKTSD IGRRYTI ++A FLVG++ MG PNYP L+VGR IAG+GVG++LMI+PVY+
Sbjct: 78 TAGKTSDVIGRRYTIALSAVIFLVGSVLMGYGPNYPVLMVGRCIAGVGVGFALMIAPVYS 137
Query: 146 AEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVG 205
AEIS RGFLTSLPE+ I LGIL GYV NY L + WR+MLG+AA P+ ++ G
Sbjct: 138 AEISSASHRGFLTSLPELCISLGILLGYVSNYCFGKLTLKLGWRLMLGIAAFPSLILAFG 197
Query: 206 VLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPP 265
+ MPESPRWLVM+ R +EAK++++ VS+TE+EA+ER D++ AA+ + G
Sbjct: 198 ITRMPESPRWLVMQGRLEEAKKIMVLVSNTEEEAEERFRDILTAAEVDVTEIKEVGGGVK 257
Query: 266 KGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKP 325
K N G+ VW++L++KP PAVR +LIAAVGI+FF A+G +AV+ Y+P +FK AG+ K
Sbjct: 258 KKN-HGKSVWRELVIKPRPAVRLILIAAVGIHFFEHATGIEAVVLYSPRIFKKAGVVSKD 316
Query: 326 VLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEG-STP 384
L V +GL K FF++++ LDK GRR LLL + GMV +L L + +++
Sbjct: 317 KLLLATVGVGLTKAFFIIIATFLLDKVGRRKLLLTSTGGMVFALTSLAVSLTMVQRFGRL 376
Query: 385 TVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMT 444
+ L I++ AFV+FFSIGLGPITWVYSSEIFPLRLRAQG+++ ++VNR+++ +SM+
Sbjct: 377 AWALSLSIVSTYAFVAFFSIGLGPITWVYSSEIFPLRLRAQGASIGVAVNRIMNATVSMS 436
Query: 445 FLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEEMQALF 491
FLS++ ++ GG FF+ AGI FF+ LPETKG LEEM+ LF
Sbjct: 437 FLSMTKAITTGGVFFVFAGIAVAAWWFFFFMLPETKGLPLEEMEKLF 483
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Plasma membrane sugar-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WUU6|PLT4_ARATH Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 461 bits (1185), Expect = e-129, Method: Compositional matrix adjust.
Identities = 232/490 (47%), Positives = 327/490 (66%), Gaps = 20/490 (4%)
Query: 4 AEAGGPDDHQNVEAGTGRQKKGLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLE 63
++A +H+ EA R +K Y CA AS+N++LLGYD+GVMSGAVL+I++DL+
Sbjct: 33 SDAEESQNHREAEARNSRTRK----YVMACAFFASLNNVLLGYDVGVMSGAVLFIQQDLK 88
Query: 64 ITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFL 123
ITEVQ EVL+G L++ SL GSLA G+TSD IGR++T+ +AA F GA M +AP++ L
Sbjct: 89 ITEVQTEVLIGSLSIISLFGSLAGGRTSDSIGRKWTMALAALVFQTGAAVMAVAPSFEVL 148
Query: 124 IVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLP 183
++GR +AGIG+G +MI+PVY AEISPT+ RGF TS PE+FI LGIL GYV NYA SGL
Sbjct: 149 MIGRTLAGIGIGLGVMIAPVYIAEISPTVARGFFTSFPEIFINLGILLGYVSNYAFSGLS 208
Query: 184 GNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERL 243
+I+WRIML + +P+ IG + ++PESPRWLVMK R D A+ VL+K ++ + EA+ERL
Sbjct: 209 VHISWRIMLAVGILPSVFIGFALCVIPESPRWLVMKGRVDSAREVLMKTNERDDEAEERL 268
Query: 244 DDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQAS 303
++ AA + G +D VW++L L P+P VR+MLI GI F Q +
Sbjct: 269 AEIQLAAAHT--EGSEDRP-----------VWREL-LSPSPVVRKMLIVGFGIQCFQQIT 314
Query: 304 GNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSS 363
G DA +YY+P + K AGI + L V +G+ KT F++ + +D GR+PLL + +
Sbjct: 315 GIDATVYYSPEILKEAGIQDETKLLAATVAVGVTKTVFILFATFLIDSVGRKPLLYVSTI 374
Query: 364 GMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLR 423
GM L L L T+ + L ++ VC V+FFSIG+GP+ WV +SEIFPLRLR
Sbjct: 375 GMTLCLFCLSFTLTFL--GQGTLGITLALLFVCGNVAFFSIGMGPVCWVLTSEIFPLRLR 432
Query: 424 AQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKT 483
AQ SAL NR+ SG+++M+FLS+S ++ GGTFF+ + ++ + IF YV +PET GK+
Sbjct: 433 AQASALGAVGNRVCSGLVAMSFLSVSRAITVGGTFFVFSLVSALSVIFVYVLVPETSGKS 492
Query: 484 LEEMQALFGG 493
LE+++ +F G
Sbjct: 493 LEQIELMFQG 502
|
Plasma membrane sugar-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (633), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 158/472 (33%), Positives = 256/472 (54%), Gaps = 42/472 (8%)
Query: 43 LLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVV 102
L GYD GV+SGA+L++K++L + ++V L V +++GS A+GK +D GR+ I+
Sbjct: 19 LYGYDTGVISGAILFMKKELGLNAFTEGLVVSSLLVGAILGSGAAGKLTDRFGRKKAIMA 78
Query: 103 AAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPE 162
AA F +G L + LAPN +++ R+I G+ VG S I P+Y +E++P KRG L+SL +
Sbjct: 79 AALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRGALSSLNQ 138
Query: 163 VFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRY 222
+ I +GIL Y+ NY + WR MLGLAAVP+ ++ +G+L MPESPRWL
Sbjct: 139 LMITVGILLSYIVNYIFADAEA---WRWMLGLAAVPSLLLLIGILFMPESPRWLFTNGEE 195
Query: 223 DEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKP 282
+AK++L K+ T ++ + + D+ +A K+ D+G K F
Sbjct: 196 SKAKKILEKLRGT-KDIDQEIHDIKEAEKQ--------DEGGLKELF------------- 233
Query: 283 TPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFV 342
P VR LIA +G+ F Q G + +IYY P F G + G V +G
Sbjct: 234 DPWVRPALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGFGNSASILG-TVGIGTVNVLMT 292
Query: 343 VLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFF 402
+++ +DK GR+PLLL G++GMV SL++L + + + +TP +I + F+ F
Sbjct: 293 LVAIKIIDKIGRKPLLLFGNAGMVISLIVLALVNLFFD-NTPAASWT-TVICLGVFIVVF 350
Query: 403 SIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLA 462
++ GP+ WV E+FPL +R G+ ++ + + + ++S+T+ + + F + A
Sbjct: 351 AVSWGPVVWVMLPELFPLHVRGIGTGVSTLMLHVGTLIVSLTYPILMEAIGISYLFLIYA 410
Query: 463 GITTVGTIFFYVFLPETKGKTLEEMQALFGGDNDDTSRDEN------EKQQT 508
I + +F + ETKG++LEE+ + RD+N KQQT
Sbjct: 411 AIGIMAFLFVRFKVTETKGRSLEEI--------EQDLRDKNGQGGAAGKQQT 454
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|O52733|XYLT_LACBR D-xylose-proton symporter OS=Lactobacillus brevis GN=xylT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (608), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 157/481 (32%), Positives = 261/481 (54%), Gaps = 40/481 (8%)
Query: 35 LLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYI 94
++ +L GYD GV+SGA+L+I++ + + Q +V + + +++G+ G +SD
Sbjct: 11 FFGALGGLLFGYDTGVISGAILFIQKQMNLGSWQQGWVVSAVLLGAILGAAIIGPSSDRF 70
Query: 95 GRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKR 154
GRR ++++A F VGAL +P + LI+ R+I G+ VG + + P Y AE++P+ KR
Sbjct: 71 GRRKLLLLSAIIFFVGALGSAFSPEFWTLIISRIILGMAVGAASALIPTYLAELAPSDKR 130
Query: 155 GFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIMPESPR 214
G ++SL ++ ++ GIL Y+ NY+ SG WR MLG AA+PAA++ +G LI+PESPR
Sbjct: 131 GTVSSLFQLMVMTGILLAYITNYSFSGF--YTGWRWMLGFAAIPAALLFLGGLILPESPR 188
Query: 215 WLVMKSRYDEAKRVLLKVSDTEQEA-KERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEG 273
+LV DEA+ VL ++ +Q A + ++D+ ++AK S G
Sbjct: 189 FLVKSGHLDEARHVLDTMNKHDQVAVNKEINDIQESAKIVS------------------G 230
Query: 274 VWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVV 333
W +L K VR LI +G+ F Q G + V+YY P +F G L ++
Sbjct: 231 GWSELFGK---MVRPSLIIGIGLAIFQQVMGCNTVLYYAPTIFTDVGFGVSAALLA-HIG 286
Query: 334 MGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCII 393
+G+ ++ +DK R+ ++ +G+ GM SL ++ IG K GS ++ +I
Sbjct: 287 IGIFNVIVTAIAVAIMDKIDRKKIVNIGAVGMGISLFVMSIGMKFSGGSQTAAII--SVI 344
Query: 394 AVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLS 453
A+ +++FFS GP+ WV E+FPL +R G++ A +N + ++S+TF S+ L
Sbjct: 345 ALTVYIAFFSATWGPVMWVMIGEVFPLNIRGLGNSFASVINWTANMIVSLTFPSL---LD 401
Query: 454 FGGT--FFLLAGITTVGTIFFY---VFLPETKGKTLEEMQALFGGDNDDTSRDENEKQQT 508
F GT F+ GI +I+F VF ET+ ++LE+++A T D E T
Sbjct: 402 FFGTGSLFIGYGILCFASIWFVQKKVF--ETRNRSLEDIEATL---RAKTGEDAAELSTT 456
Query: 509 E 509
+
Sbjct: 457 K 457
|
Uptake of D-xylose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Lactobacillus brevis (taxid: 1580) |
| >sp|O34718|IOLT_BACSU Major myo-inositol transporter IolT OS=Bacillus subtilis (strain 168) GN=iolT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (607), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 161/491 (32%), Positives = 257/491 (52%), Gaps = 29/491 (5%)
Query: 22 QKKGLNKYAFI--CALLASINSILLGYDIGVMSGAVLYIKE--DLEITEVQVEVLVGILN 77
K+G N+ +F+ L+++ +L GYD GV++GA+ Y+ E L + ++ L
Sbjct: 2 NKQG-NQMSFLRTIILVSTFGGLLFGYDTGVLNGALPYMGEPDQLNLNAFTEGLVTSSLL 60
Query: 78 VFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYS 137
+ +G++ G+ SD+ GRR I+ A F + + APN +I+ R + GI VG +
Sbjct: 61 FGAALGAVFGGRMSDFNGRRKNILFLAVIFFISTIGCTFAPNVTVMIISRFVLGIAVGGA 120
Query: 138 LMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNIN--WRIMLGLA 195
+ P Y AE+SP RG + + E+ IV G L +VFN L G+ + WR ML +A
Sbjct: 121 SVTVPAYLAEMSPVESRGRMVTQNELMIVSGQLLAFVFNAILGTTMGDNSHVWRFMLVIA 180
Query: 196 AVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSP 255
++PA + G++ MPESPRWLV K R ++A RVL K+ D E+ A L ++ A K+
Sbjct: 181 SLPALFLFFGMIRMPESPRWLVSKGRKEDALRVLKKIRD-EKRAAAELQEIEFAFKK--- 236
Query: 256 SGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAV 315
+DQ + +KDL P VRR++ +GI Q +G ++++YY +
Sbjct: 237 ----EDQ-------LEKATFKDL---SVPWVRRIVFIGLGIAIVQQITGVNSIMYYGTEI 282
Query: 316 FKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIG 375
+ +G + L G N+ G+ + L + GRRP+L+ G G +LLL+GI
Sbjct: 283 LRNSGFQTEAALIG-NIANGVISVLATFVGIWLLGRVGRRPMLMTGLIGTTTALLLIGIF 341
Query: 376 SKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNR 435
S +LEGS VVL + F++F + P+TW+ SEIFPLRLR G + +
Sbjct: 342 SLVLEGSPALPYVVLSL--TVTFLAFQQGAISPVTWLMLSEIFPLRLRGLGMGVTVFCLW 399
Query: 436 LVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEEMQALFGG-D 494
+V+ +S TF + + TFF+ G+ +F FLPETKG +LE+++ F D
Sbjct: 400 MVNFAVSFTFPILLAAIGLSTTFFIFVGLGICSVLFVKRFLPETKGLSLEQLEENFRAYD 459
Query: 495 NDDTSRDENEK 505
+ +D +
Sbjct: 460 HSGAKKDSGAE 470
|
Major myo-inositol uptake transporter. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3 | Back alignment and function description |
|---|
Score = 229 bits (583), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 154/494 (31%), Positives = 248/494 (50%), Gaps = 39/494 (7%)
Query: 22 QKKGLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSL 81
KK KY + ++ +L GYD GV+SGA+L+I D+ +T + ++V +L + ++
Sbjct: 1 MKKDTRKY--MIYFFGALGGLLYGYDTGVISGALLFINNDIPLTTLTEGLVVSMLLLGAI 58
Query: 82 IGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMIS 141
GS SG SD GRR + V + F++GALA + LI R+I G+ VG S +
Sbjct: 59 FGSALSGTCSDRWGRRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALV 118
Query: 142 PVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAV 201
PVY +E++PT RG L ++ + IV GIL Y+ NY + WR M+GLAAVPA +
Sbjct: 119 PVYLSEMAPTKIRGTLGTMNNLMIVTGILLAYIVNYLFTPFEA---WRWMVGLAAVPAVL 175
Query: 202 IGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDD 261
+ +G+ MPESPRWLV + +EA+R+ + ++ ++ + L +M
Sbjct: 176 LLIGIAFMPESPRWLVKRGSEEEARRI-MNITHDPKDIEMELAEM--------------K 220
Query: 262 QGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGI 321
QG + T GV K ++P ML+ VG+ F QA G + VIYY P +F AG+
Sbjct: 221 QGEAEKKETTLGVLKAKWIRP------MLLIGVGLAIFQQAVGINTVIYYAPTIFTKAGL 274
Query: 322 HRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSL-----LLLGIGS 376
G + +G+ + + + +D+ GR+ LL+ GS G+ SL +LL +G
Sbjct: 275 GTSASALG-TMGIGILNVIMCITAMILIDRVGRKKLLIWGSVGITLSLAALSGVLLTLG- 332
Query: 377 KILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRL 436
L ST + VV + ++ F+ GP+ WV E+FP + R + V
Sbjct: 333 --LSASTAWMTVVF----LGVYIVFYQATWGPVVWVLMPELFPSKARGAATGFTTLVLSA 386
Query: 437 VSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEEMQALFGGDND 496
+ ++S+ F + + F + + I + F + +PETKGK+LEE++A
Sbjct: 387 ANLIVSLVFPLMLSAMGIAWVFMVFSVICLLSFFFAFYMVPETKGKSLEEIEASLKKRFK 446
Query: 497 DTSRDENEKQQTET 510
+N+ T
Sbjct: 447 KKKSTQNQVLNERT 460
|
Could serve either a nutritional or an osmotic protection function. Bacillus subtilis (strain 168) (taxid: 224308) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 513 | ||||||
| 255546487 | 507 | sugar transporter, putative [Ricinus com | 0.943 | 0.954 | 0.697 | 0.0 | |
| 255546485 | 539 | sugar transporter, putative [Ricinus com | 0.961 | 0.914 | 0.635 | 0.0 | |
| 449527167 | 503 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.908 | 0.926 | 0.640 | 1e-178 | |
| 356522722 | 535 | PREDICTED: polyol transporter 5-like [Gl | 0.953 | 0.914 | 0.630 | 1e-177 | |
| 449464678 | 503 | PREDICTED: probable polyol transporter 6 | 0.908 | 0.926 | 0.638 | 1e-177 | |
| 225445240 | 500 | PREDICTED: polyol transporter 5 [Vitis v | 0.937 | 0.962 | 0.619 | 1e-177 | |
| 356529624 | 543 | PREDICTED: polyol transporter 5-like [Gl | 0.937 | 0.885 | 0.638 | 1e-176 | |
| 357521013 | 498 | Polyol transporter [Medicago truncatula] | 0.925 | 0.953 | 0.674 | 1e-174 | |
| 357500761 | 515 | Myo-inositol transporter [Medicago trunc | 0.902 | 0.899 | 0.636 | 1e-170 | |
| 297738827 | 807 | unnamed protein product [Vitis vinifera] | 0.871 | 0.553 | 0.583 | 1e-159 |
| >gi|255546487|ref|XP_002514303.1| sugar transporter, putative [Ricinus communis] gi|223546759|gb|EEF48257.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/490 (69%), Positives = 415/490 (84%), Gaps = 6/490 (1%)
Query: 22 QKKGLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSL 81
+K LN YAF CALLAS NSILLGYDIGVMSGAVL+I+E+L+IT QVE+LVGILNV SL
Sbjct: 21 KKTRLNIYAFGCALLASTNSILLGYDIGVMSGAVLFIRENLKITSTQVEILVGILNVCSL 80
Query: 82 IGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMIS 141
IGSLASGKTSDYIGRRYTIV+AAATFL+GAL MGLAP+YPFL+ GR++AGIGVGYSLMI+
Sbjct: 81 IGSLASGKTSDYIGRRYTIVLAAATFLIGALLMGLAPSYPFLVAGRVVAGIGVGYSLMIA 140
Query: 142 PVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAV 201
PVY+AE+SP M RGFLTSLPEVFIV GIL GY+ NYALSGLP +INWR+MLGLAA+P+ +
Sbjct: 141 PVYSAELSPAMTRGFLTSLPEVFIVFGILLGYILNYALSGLPIHINWRVMLGLAAIPSIL 200
Query: 202 IGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDD 261
IGVGV+ MPESPRWLV++ R DEAKRVL+KVSD+ +EA+ RL ++ +AA S + +
Sbjct: 201 IGVGVIAMPESPRWLVIQGRVDEAKRVLVKVSDSTEEAESRLAEITQAAS----SLGNRE 256
Query: 262 QGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGI 321
+G ++ G+GVWK+L+L+P+ VRRML+AA+GINFFMQASGNDAVIYY P VFK AGI
Sbjct: 257 EGSGSSSWHGQGVWKELLLRPSRPVRRMLVAAIGINFFMQASGNDAVIYYCPEVFKAAGI 316
Query: 322 HRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEG 381
H+K VLFG+NV+MGL+KTFFV++SAL+LD+FGRRPLLLLG+SGM SL+ LG GSK LE
Sbjct: 317 HKKKVLFGVNVIMGLSKTFFVLVSALYLDRFGRRPLLLLGTSGMAVSLVALGSGSKFLEN 376
Query: 382 --STPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSG 439
P +V+CI+AVCAFVS FSIGLGPITWVYSSEIFPLRLRAQGS LAISVNRLVSG
Sbjct: 377 PDHRPLWAIVMCIVAVCAFVSCFSIGLGPITWVYSSEIFPLRLRAQGSGLAISVNRLVSG 436
Query: 440 VISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEEMQALFGGDNDDTS 499
V+SMTFL+++ +++FGG FF+LAGI VGT+FFYV++PETKGKTLEE+ +LF +
Sbjct: 437 VVSMTFLTLAKKITFGGVFFVLAGIMVVGTLFFYVYMPETKGKTLEEIGSLFEDKAGCSE 496
Query: 500 RDENEKQQTE 509
+N ++ E
Sbjct: 497 AGDNGREMRE 506
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546485|ref|XP_002514302.1| sugar transporter, putative [Ricinus communis] gi|223546758|gb|EEF48256.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/507 (63%), Positives = 402/507 (79%), Gaps = 14/507 (2%)
Query: 2 ETAEAGGPDDHQNVEAGTGRQKKGLNKYAFICALLASINSILLGYDIGVMSGAVLYIKED 61
+ A G H+ ++K +NKYAF A+LAS NS+LLGYDIGVMSGAVLYI++D
Sbjct: 42 KDAAEGESLKHKAALGAPAQRKTHINKYAFAGAVLASTNSVLLGYDIGVMSGAVLYIRDD 101
Query: 62 LEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYP 121
L IT QVE+LVG LNV SLIGSLASG+TSDYIGRRYTIV+AAATF +GA+ MGLAP++
Sbjct: 102 LHITSTQVEILVGCLNVCSLIGSLASGRTSDYIGRRYTIVLAAATFFIGAILMGLAPSFT 161
Query: 122 FLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSG 181
FL+ GR++AGIGVGYSLMI+PVYTAE+SP + RGFL+SLPEVFI +G L GYV NYALSG
Sbjct: 162 FLMAGRVVAGIGVGYSLMIAPVYTAELSPAITRGFLSSLPEVFINVGALLGYVSNYALSG 221
Query: 182 LPGNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKE 241
LP + NWR+MLGLAA PA ++ +GV++MPESPRWLVMK R+ +AK+VL + S++E+EA+
Sbjct: 222 LPNDKNWRLMLGLAAFPAIIVALGVMMMPESPRWLVMKGRFGDAKKVLARTSESEEEAEL 281
Query: 242 RLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQ 301
RL +MIKAAK D G N+ G+G W++L+ +P+ +RR+LI+A+G+NFFMQ
Sbjct: 282 RLTEMIKAAK-------DLTHGAASSNWRGQGAWRELLFEPSRPIRRILISAIGVNFFMQ 334
Query: 302 ASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLG 361
ASGNDAV+YYTPAVFK AGI + L G+ ++MG+AKTFFV++SAL LD+FGRRPLLLLG
Sbjct: 335 ASGNDAVMYYTPAVFKDAGIQSRQQLVGVTIIMGIAKTFFVLVSALFLDRFGRRPLLLLG 394
Query: 362 SSGMVGSLLLLGIGSKILEGS--TPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFP 419
++GM +L LG+GSK L+ P + LCI+AVCA VSFFSIGLGPITWVYSSEIFP
Sbjct: 395 TTGMAVALAALGLGSKYLQQCDIKPLWAIALCIVAVCADVSFFSIGLGPITWVYSSEIFP 454
Query: 420 LRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPET 479
+RLRAQG++LAISVNRLVSG+++MTFLSIS +SFGG FF L+GI VGTIFFY FLPET
Sbjct: 455 MRLRAQGTSLAISVNRLVSGIVAMTFLSISRLISFGGMFFALSGILVVGTIFFYFFLPET 514
Query: 480 KGKTLEEMQALFGGDNDDTSRDENEKQ 506
KGKTLEE+ +LF + ENE+
Sbjct: 515 KGKTLEEIGSLF-----EDKIPENERH 536
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449527167|ref|XP_004170584.1| PREDICTED: LOW QUALITY PROTEIN: probable polyol transporter 6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 308/481 (64%), Positives = 381/481 (79%), Gaps = 15/481 (3%)
Query: 25 GLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGS 84
G+NKY C++LAS NSILLGYDIGVMSGAVLYI+E+L I+ QVE+LVG LN+ SLIGS
Sbjct: 35 GINKYTLFCSILASTNSILLGYDIGVMSGAVLYIEENLNISSTQVEILVGSLNILSLIGS 94
Query: 85 LASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVY 144
LASG+TSD IGRRYT ++A+ TFL+GA+ MGLAP+YP L+ GRMIAGIGVGY+LM++PVY
Sbjct: 95 LASGRTSDSIGRRYTTLLASTTFLIGAILMGLAPSYPLLLAGRMIAGIGVGYALMVAPVY 154
Query: 145 TAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGV 204
AE+SP+ RG L+SLPE+FI GIL GY+ NYALSGLP +INWRIMLGLA +PA +G+
Sbjct: 155 IAELSPSTSRGLLSSLPEIFITFGILIGYIINYALSGLPPHINWRIMLGLAGIPALAVGL 214
Query: 205 GVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGP 264
GVL MPESPRWL+MK + ++AK VLLK+S E EA+ERL + AA S
Sbjct: 215 GVLTMPESPRWLIMKGKSEQAKEVLLKISSNEIEAEERLRSITGAAAAGS---------- 264
Query: 265 PKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRK 324
+ G+GVWK+L++KPT +RRMLIAA+GINFFMQASGNDAV+YY+P VF+ AGIH K
Sbjct: 265 ---GWHGQGVWKELLIKPTKPIRRMLIAAIGINFFMQASGNDAVMYYSPEVFRAAGIHEK 321
Query: 325 PVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGST- 383
LFG+NVVMG+ KT FVVLSA++LD+FGRRPLLLLGS GM +L LLG+GSK+ E
Sbjct: 322 RHLFGVNVVMGITKTCFVVLSAVYLDRFGRRPLLLLGSIGMTVALALLGLGSKVXEKGKG 381
Query: 384 -PTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVIS 442
P V + +IA+C V+ FSIGLGPITWVYSSEIFP R+RAQGS+LAISVNRLVSG++S
Sbjct: 382 RPRWGVAVSVIALCCDVALFSIGLGPITWVYSSEIFPNRMRAQGSSLAISVNRLVSGIVS 441
Query: 443 MTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEEMQALFGGDNDDTSRDE 502
MTFL+IS ++FGG F +L+GI V ++FFY FLPETKGK+LEEM+ LF + T+ +
Sbjct: 442 MTFLTISKEITFGGMFLVLSGIMAVASLFFYFFLPETKGKSLEEMEVLFQDKVNSTTDNN 501
Query: 503 N 503
N
Sbjct: 502 N 502
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356522722|ref|XP_003529995.1| PREDICTED: polyol transporter 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 311/493 (63%), Positives = 391/493 (79%), Gaps = 4/493 (0%)
Query: 2 ETAEAGGPDDHQNVEAGTGRQKKGLNKYAFICALLASINSILLGYDIGVMSGAVLYIKED 61
E + P+ QN + + + LN+YA A+LAS NSILLGYDIGVMSGA L I++D
Sbjct: 39 EGSSQHQPNTSQNCVSYQSNKPR-LNRYALGGAILASTNSILLGYDIGVMSGASLLIRQD 97
Query: 62 LEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYP 121
L+IT VQVE+LVG LNV SLIGSLASGKTSD+IGRRYTI+VAAATFL+GA+ MGLAP++P
Sbjct: 98 LKITSVQVEILVGCLNVCSLIGSLASGKTSDWIGRRYTIMVAAATFLIGAILMGLAPSFP 157
Query: 122 FLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSG 181
FL+ GR++AGIGVGYSLMISPVY AE+SP + RGFLTSLPEVFI +GIL GYV NYA SG
Sbjct: 158 FLMAGRVVAGIGVGYSLMISPVYVAELSPALTRGFLTSLPEVFISVGILLGYVSNYAFSG 217
Query: 182 LPGNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKE 241
LP INWR+MLGLAA+P+ + +GVL MPESPRWLV+K R++EAK+VL++ S+ + EA+
Sbjct: 218 LPNGINWRLMLGLAALPSIAVALGVLAMPESPRWLVVKGRFEEAKQVLIRTSENKGEAEL 277
Query: 242 RLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQ 301
RL ++ +AA S+ D G+F G+GVWK+L++ PT V R+L+ A+G+NFFMQ
Sbjct: 278 RLAEIQEAAAASASITNMDKATTSDGSFNGQGVWKELLVTPTSPVLRILVVAIGVNFFMQ 337
Query: 302 ASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLG 361
ASGNDAV+YY+P VFK AGI + LFG+ ++MG+AKT FV++SAL LD GRRP+LLLG
Sbjct: 338 ASGNDAVMYYSPEVFKEAGIKDEKQLFGVTIIMGIAKTCFVLISALFLDPVGRRPMLLLG 397
Query: 362 SSGMVGSLLLLGIGSKILEGS---TPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIF 418
S GM SL +LG+G +L+ S V+ LC++AVCA VSFFSIGLGP TWVYSSEIF
Sbjct: 398 SCGMAISLFVLGLGCTLLKLSGDNKDEWVIALCVVAVCATVSFFSIGLGPTTWVYSSEIF 457
Query: 419 PLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPE 478
PLRLRAQGS+LAISVNRL+SG++SMTFLS+S ++FGG FF+L G+ T+FFY FLPE
Sbjct: 458 PLRLRAQGSSLAISVNRLMSGIVSMTFLSVSEAITFGGMFFVLCGVMVCATLFFYFFLPE 517
Query: 479 TKGKTLEEMQALF 491
TKGK+LEE++ALF
Sbjct: 518 TKGKSLEEIEALF 530
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464678|ref|XP_004150056.1| PREDICTED: probable polyol transporter 6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 307/481 (63%), Positives = 381/481 (79%), Gaps = 15/481 (3%)
Query: 25 GLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGS 84
G+NKY C++LAS NSILLGYDIGVMSGAVLYI+E+L I+ QVE+LVG LN+ SLIGS
Sbjct: 35 GINKYTLFCSILASTNSILLGYDIGVMSGAVLYIEENLNISSTQVEILVGSLNILSLIGS 94
Query: 85 LASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVY 144
LASG+TSD IGRRYT ++A+ TFL+GA+ MGLAP+YP L+ GRMIAGIGVGY+LM++PVY
Sbjct: 95 LASGRTSDSIGRRYTTLLASTTFLIGAILMGLAPSYPLLLAGRMIAGIGVGYALMVAPVY 154
Query: 145 TAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGV 204
AE+SP+ RG L+SLPE+FI GIL GY+ NYALSGLP +INWRIMLGLA +PA +G+
Sbjct: 155 IAELSPSTSRGLLSSLPEIFITFGILIGYIINYALSGLPPHINWRIMLGLAGIPALAVGL 214
Query: 205 GVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGP 264
GVL MPESPRWL+MK + ++AK VLLK+S E EA+ERL + AA S
Sbjct: 215 GVLTMPESPRWLIMKGKSEQAKEVLLKISSNEIEAEERLRSITGAAAAGS---------- 264
Query: 265 PKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRK 324
+ G+GVWK+L++KPT +RRMLIAA+GINFFMQASGNDAV+YY+P VF+ AGIH K
Sbjct: 265 ---GWHGQGVWKELLIKPTKPIRRMLIAAIGINFFMQASGNDAVMYYSPEVFRAAGIHEK 321
Query: 325 PVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGST- 383
LFG+NVVMG+ KT FVVLSA++LD+FGRRPLLLLGS GM +L LLG+GSK+ +
Sbjct: 322 RHLFGVNVVMGITKTCFVVLSAVYLDRFGRRPLLLLGSIGMTVALALLGLGSKVTKKGKG 381
Query: 384 -PTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVIS 442
P V + +IA+C V+ FSIGLGPITWVYSSEIFP R+RAQGS+LAISVNRLVSG++S
Sbjct: 382 RPRWGVAVSVIALCCDVALFSIGLGPITWVYSSEIFPNRMRAQGSSLAISVNRLVSGIVS 441
Query: 443 MTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEEMQALFGGDNDDTSRDE 502
MTFL+IS ++FGG F +L+GI V ++FFY FLPETKGK+LEEM+ LF + T+ +
Sbjct: 442 MTFLTISKEITFGGMFLVLSGIMAVASLFFYFFLPETKGKSLEEMEVLFQDKVNSTTDNN 501
Query: 503 N 503
N
Sbjct: 502 N 502
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445240|ref|XP_002280978.1| PREDICTED: polyol transporter 5 [Vitis vinifera] gi|310877840|gb|ADP37151.1| putative polyol/monosaccharide transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 309/499 (61%), Positives = 394/499 (78%), Gaps = 18/499 (3%)
Query: 10 DDHQ---NVEAGTGRQKKGLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITE 66
+ HQ + G R+K LNK++ +CALLAS SILLGYDIGVMSGAVLYIK+++ I+
Sbjct: 13 ESHQPQASEAGGASRKKSSLNKFSLVCALLASTCSILLGYDIGVMSGAVLYIKDEIHISS 72
Query: 67 VQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVG 126
VQVE+LVG LNV SLIGSLASGKTSD IGRRYTIV+AAATFL+GAL M LAP+Y FL+ G
Sbjct: 73 VQVEILVGSLNVCSLIGSLASGKTSDLIGRRYTIVLAAATFLIGALLMSLAPSYLFLMAG 132
Query: 127 RMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNI 186
R++AGIGVGYSLMI+PVYTAE+SP M RGFLTSLPEVFI GIL GY+ NYAL+GLP I
Sbjct: 133 RVVAGIGVGYSLMIAPVYTAELSPAMTRGFLTSLPEVFITFGILLGYIANYALAGLPPKI 192
Query: 187 NWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDM 246
NWR+MLG+AAVPA VIG+ V+ MPESPRWLVMK R +AK++L++ SD E+EA+ RL ++
Sbjct: 193 NWRMMLGIAAVPAIVIGISVIGMPESPRWLVMKGRISQAKQILIRTSDDEEEAELRLSEI 252
Query: 247 IKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGND 306
++ A ++ ++G+GVW +L+ +P+ +RR+L+AA+G+NFFMQASGND
Sbjct: 253 MREASTTT-----------SAEWSGQGVWMELLCRPSKPIRRILVAAIGMNFFMQASGND 301
Query: 307 AVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMV 366
AV+YY+PAVF+ AGI+ + L G+ ++MG+ KT FV++SAL LD++GRRPLLLLGS GM
Sbjct: 302 AVVYYSPAVFENAGINDRRQLVGVTIIMGITKTAFVLVSALFLDRYGRRPLLLLGSIGMA 361
Query: 367 GSLLLLGIGSKILEGS--TPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRA 424
SL L +GSK LE S PT + LC++AVCA VSFFSIGLGPITWVYSSEIFP RLRA
Sbjct: 362 VSLGGLALGSKYLEDSEHKPTWAIALCVVAVCADVSFFSIGLGPITWVYSSEIFPTRLRA 421
Query: 425 QGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTL 484
QG+++A+SVNRLVSGV++MTFLSIS ++FGG F + G+ +G+IFFY F+PETKGK+L
Sbjct: 422 QGTSMAVSVNRLVSGVVAMTFLSISKAITFGGMFLVFCGVMVIGSIFFYFFIPETKGKSL 481
Query: 485 EEMQALFGGDN--DDTSRD 501
E++ LF D++RD
Sbjct: 482 EDIATLFEDKPLLTDSTRD 500
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529624|ref|XP_003533389.1| PREDICTED: polyol transporter 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1613), Expect = e-176, Method: Compositional matrix adjust.
Identities = 314/492 (63%), Positives = 393/492 (79%), Gaps = 11/492 (2%)
Query: 9 PDDHQN-VEAGTGRQKKGLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEV 67
P+ QN V + R + LN YA A+LAS NSILLGYDIGVMSGA L+I++DL+IT V
Sbjct: 49 PNTSQNYVSYQSNRSR--LNGYALCGAILASTNSILLGYDIGVMSGASLFIRQDLKITSV 106
Query: 68 QVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGR 127
QVE+LVG LNV SLIGSLASGKTSD+IGRRYTI+VAAATFL+GA+ MGLAP++PFL+ GR
Sbjct: 107 QVEILVGSLNVCSLIGSLASGKTSDWIGRRYTIMVAAATFLIGAILMGLAPSFPFLMAGR 166
Query: 128 MIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNIN 187
++AGIGVGYSLMISPVY AE+SP + RGFLTSLPEVFI +GIL GYV NYA +GLP IN
Sbjct: 167 VVAGIGVGYSLMISPVYVAELSPALTRGFLTSLPEVFISVGILLGYVSNYAFAGLPNGIN 226
Query: 188 WRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMI 247
WR+MLGLAA+PA + +GVL MPESPRWLV+K R++EAK+VL++ S+ + EA+ RL ++
Sbjct: 227 WRLMLGLAALPAIAVALGVLGMPESPRWLVVKGRFEEAKQVLIRTSENKGEAELRLAEIQ 286
Query: 248 KAAKESSPSGPD-----DDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQA 302
+AA + + D P + G+GVWK+L++ PT V R+L+AA+G+NFFMQA
Sbjct: 287 EAAASAFFTNIDKATTSSRASPTTRMWHGQGVWKELLVTPTHTVLRILVAAIGVNFFMQA 346
Query: 303 SGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGS 362
SGNDAVIYY+P VFK AGI + LFG+ ++MG+AKT FV++SAL LDKFGRRP+LLLGS
Sbjct: 347 SGNDAVIYYSPEVFKEAGIEGEKQLFGVTIIMGIAKTCFVLISALFLDKFGRRPMLLLGS 406
Query: 363 SGMVGSLLLLGIGSKILEGS---TPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFP 419
GM SL +LG+G +L+ S V+ LC++AVCA VSFFSIGLGPITWVYSSEIFP
Sbjct: 407 CGMAISLFVLGLGCTLLKLSGDNKDEWVIALCVVAVCATVSFFSIGLGPITWVYSSEIFP 466
Query: 420 LRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPET 479
LRLRAQGS+LAIS+NRL+SG++SMTFLS+S ++FGG FF+L G+ T+FFY FLPET
Sbjct: 467 LRLRAQGSSLAISMNRLMSGIVSMTFLSVSEAITFGGMFFVLGGVMVCATLFFYFFLPET 526
Query: 480 KGKTLEEMQALF 491
KGK+LEE++ALF
Sbjct: 527 KGKSLEEIEALF 538
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357521013|ref|XP_003630795.1| Polyol transporter [Medicago truncatula] gi|355524817|gb|AET05271.1| Polyol transporter [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 327/485 (67%), Positives = 395/485 (81%), Gaps = 10/485 (2%)
Query: 26 LNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSL 85
+N+Y +CALL+S NSILLGYDIGVMSGA + IKE+L+I+ +Q E+LVG LN+ SLIGSL
Sbjct: 14 INRYTLLCALLSSTNSILLGYDIGVMSGASMLIKENLKISRIQQEILVGSLNLCSLIGSL 73
Query: 86 ASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYT 145
ASGKTSD IGRRYTIV+AAATFL+GA+ M LAP++ F++ GRMIAGIGVGY+LMISP+YT
Sbjct: 74 ASGKTSDTIGRRYTIVLAAATFLIGAIFMSLAPSFLFILTGRMIAGIGVGYALMISPLYT 133
Query: 146 AEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVG 205
AE+SPT RGFLTSLPEVFI LGIL GYV NYAL+ LP N+ WRIML ++A+PA +I G
Sbjct: 134 AELSPTTTRGFLTSLPEVFITLGILIGYVINYALTDLPINLGWRIMLAISALPAILIAFG 193
Query: 206 VLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPP 265
V+ MPESP WLV K R EAKRVLL +S T +EA+ RL +++K D GP
Sbjct: 194 VIFMPESPHWLVFKGRVSEAKRVLLSLSTTPEEAELRLQEIVKNKN-------DLAHGP- 245
Query: 266 KGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKP 325
GN+ G+GVWK+L L+P+ ++RMLI+A+GINFFMQASGNDAVIYY+P VFK AGIH K
Sbjct: 246 -GNWIGQGVWKELFLRPSKPIKRMLISAIGINFFMQASGNDAVIYYSPEVFKAAGIHGKK 304
Query: 326 VLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGS-TP 384
LFG+NV+MGL+K+FFV LSA++LDKFGRRPLLL+GS GM SL LG GSKILEGS P
Sbjct: 305 KLFGVNVIMGLSKSFFVFLSAIYLDKFGRRPLLLIGSFGMAVSLFGLGFGSKILEGSGKP 364
Query: 385 TVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMT 444
VV+CI+AVCA VSFFSIGLGPITWVYSSEIFP+RLRAQGS++AISVNRLVSGV+SMT
Sbjct: 365 VWAVVVCIVAVCADVSFFSIGLGPITWVYSSEIFPMRLRAQGSSIAISVNRLVSGVVSMT 424
Query: 445 FLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEEMQALFGGDNDDTSRDENE 504
FLSIS +++FGG FF+LAGI T F+YV +PETKGKTLEEM+ LF D+DD + + NE
Sbjct: 425 FLSISKKITFGGMFFVLAGIMVAATGFYYVSMPETKGKTLEEMETLFVEDDDDNNNNNNE 484
Query: 505 KQQTE 509
KQ +
Sbjct: 485 KQGSH 489
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357500761|ref|XP_003620669.1| Myo-inositol transporter [Medicago truncatula] gi|355495684|gb|AES76887.1| Myo-inositol transporter [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 305/479 (63%), Positives = 375/479 (78%), Gaps = 16/479 (3%)
Query: 10 DDHQNVEAGTGRQKK---GLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITE 66
++ N+ A K LNKYA A+LAS NSILLGYDIGVMSGAV+YI++DL+I+
Sbjct: 35 NNEHNISAEEDCHKNKVYHLNKYALAGAILASTNSILLGYDIGVMSGAVIYIRKDLKISS 94
Query: 67 VQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVG 126
VQVE+LVG LNV SLIGSL SGK SD IGRRYTI++AA TFL+GAL MGLAP++ FL+ G
Sbjct: 95 VQVEILVGCLNVCSLIGSLVSGKISDMIGRRYTIMIAALTFLIGALLMGLAPSFTFLMFG 154
Query: 127 RMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNI 186
R+IAGIGVG+SLMISPVY AE+SP + RGFLTSLPEVFI GIL GYV NYALS LP +
Sbjct: 155 RVIAGIGVGFSLMISPVYVAELSPDLTRGFLTSLPEVFISFGILLGYVSNYALSSLPIGL 214
Query: 187 NWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDM 246
NWRIMLG+AA+PA ++ +GVL MPESPRWLVMK + +EAK+VL++ S + EA+ RL ++
Sbjct: 215 NWRIMLGIAALPAILVALGVLAMPESPRWLVMKGKLEEAKQVLIRTSSNKGEAEFRLSEI 274
Query: 247 IKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGND 306
+AA SS S G+GVWK+L++ PT V R+LIAAVGINFFMQASGND
Sbjct: 275 SQAATNSSTSSRH-----------GQGVWKELLITPTRPVLRILIAAVGINFFMQASGND 323
Query: 307 AVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMV 366
AVIYY+P VF+ AG+ + LFG+ ++MG+AKT FV+ SAL LD+FGRRP+LLLGSSGM
Sbjct: 324 AVIYYSPEVFREAGVKGEKQLFGVTIIMGIAKTCFVLFSALVLDRFGRRPMLLLGSSGMA 383
Query: 367 GSLLLLGIGSKILEGS--TPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRA 424
SL LG+G +L S P + LC++AVCA VSFFSIGLGP TWVYSSEIFP+RLRA
Sbjct: 384 VSLFGLGMGCTLLHNSDEKPMWAIALCVVAVCAAVSFFSIGLGPTTWVYSSEIFPMRLRA 443
Query: 425 QGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKT 483
QG++LAISVNRL+SGV+SM+FLSIS ++FGG FF+LAG+ + T+FFY FLPETKGK+
Sbjct: 444 QGTSLAISVNRLISGVVSMSFLSISEEITFGGMFFVLAGVMVLATLFFYYFLPETKGKS 502
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738827|emb|CBI28072.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 284/487 (58%), Positives = 366/487 (75%), Gaps = 40/487 (8%)
Query: 10 DDHQ---NVEAGTGRQKKGLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITE 66
+ HQ + G R+K LNK++ +CALLAS SILLGYDIGVMSGAVLYIK+++ I+
Sbjct: 13 ESHQPQASEAGGASRKKSSLNKFSLVCALLASTCSILLGYDIGVMSGAVLYIKDEIHISS 72
Query: 67 VQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVG 126
VQVE+LVG LNV SLIGSLASGKTSD IGRRYTIV+AAATFL+GAL M LAP+Y FL+ G
Sbjct: 73 VQVEILVGSLNVCSLIGSLASGKTSDLIGRRYTIVLAAATFLIGALLMSLAPSYLFLMAG 132
Query: 127 RMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNI 186
R++AGIGVGYSLMI+PVYTAE+SP M RGFLTSLPEVFI GIL GY+ NYAL+GLP I
Sbjct: 133 RVVAGIGVGYSLMIAPVYTAELSPAMTRGFLTSLPEVFITFGILLGYIANYALAGLPPKI 192
Query: 187 NWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDM 246
NWR+MLG+AAVPA VIG+ V+ MPESPRWLVMK R +AK++L++ SD E+EA+ RL ++
Sbjct: 193 NWRMMLGIAAVPAIVIGISVIGMPESPRWLVMKGRISQAKQILIRTSDDEEEAELRLSEI 252
Query: 247 IKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGND 306
++ A ++ ++G+GVW +L+ +P+ +RR+L+AA+G+NFFMQASGND
Sbjct: 253 MREASTTT-----------SAEWSGQGVWMELLCRPSKPIRRILVAAIGMNFFMQASGND 301
Query: 307 AVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMV 366
AV+YY+PAVF+ AGI+ + L G+ ++MG+ KT FV++SAL LD++GRRPLLLLGS GM
Sbjct: 302 AVVYYSPAVFENAGINDRRQLVGVTIIMGITKTAFVLVSALFLDRYGRRPLLLLGSIGMA 361
Query: 367 GSLLLLGIGSKILEGS--TPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRA 424
SL L +GSK LE S PT + LC+ IFP RLRA
Sbjct: 362 VSLGGLALGSKYLEDSEHKPTWAIALCV------------------------IFPTRLRA 397
Query: 425 QGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTL 484
QG+++A+SVNRLVSGV++MTFLSIS ++FGG F + G+ +G+IFFY F+PETKGK+L
Sbjct: 398 QGTSMAVSVNRLVSGVVAMTFLSISKAITFGGMFLVFCGVMVIGSIFFYFFIPETKGKSL 457
Query: 485 EEMQALF 491
E++ LF
Sbjct: 458 EDIATLF 464
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 513 | ||||||
| TAIR|locus:2094034 | 539 | PMT5 "polyol/monosaccharide tr | 0.641 | 0.610 | 0.545 | 1.3e-122 | |
| TAIR|locus:2052956 | 511 | PMT1 "polyol/monosaccharide tr | 0.927 | 0.931 | 0.481 | 8.8e-118 | |
| TAIR|locus:2046333 | 508 | AT2G18480 [Arabidopsis thalian | 0.941 | 0.950 | 0.481 | 1e-116 | |
| TAIR|locus:2052971 | 511 | PMT2 "polyol/monosaccharide tr | 0.906 | 0.909 | 0.479 | 1.2e-115 | |
| TAIR|locus:2115415 | 493 | PMT6 "polyol/monosaccharide tr | 0.654 | 0.681 | 0.492 | 2e-115 | |
| TAIR|locus:2051443 | 526 | AT2G20780 [Arabidopsis thalian | 0.653 | 0.636 | 0.464 | 5.7e-107 | |
| TAIR|locus:2009832 | 580 | INT2 "inositol transporter 2" | 0.608 | 0.537 | 0.329 | 9.9e-56 | |
| TAIR|locus:2130689 | 582 | INT4 "inositol transporter 4" | 0.614 | 0.541 | 0.296 | 1.7e-55 | |
| UNIPROTKB|Q96QE2 | 648 | SLC2A13 "Proton myo-inositol c | 0.660 | 0.523 | 0.280 | 3.2e-55 | |
| UNIPROTKB|F1PGX9 | 652 | SLC2A13 "Uncharacterized prote | 0.651 | 0.512 | 0.279 | 3.3e-55 |
| TAIR|locus:2094034 PMT5 "polyol/monosaccharide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 908 (324.7 bits), Expect = 1.3e-122, Sum P(2) = 1.3e-122
Identities = 180/330 (54%), Positives = 229/330 (69%)
Query: 27 NKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLA 86
N YAF CA+LAS+ SILLGYDIGVMSGA++YIK DL+I ++Q+ +L G LN++SLIGS A
Sbjct: 33 NNYAFACAILASMTSILLGYDIGVMSGAMIYIKRDLKINDLQIGILAGSLNIYSLIGSCA 92
Query: 87 SGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTA 146
+G+TSD+IGRRYTIV+A A F GA+ MGL+PNY FL+ GR IAGIGVGY+LMI+PVYTA
Sbjct: 93 AGRTSDWIGRRYTIVLAGAIFFAGAILMGLSPNYAFLMFGRFIAGIGVGYALMIAPVYTA 152
Query: 147 EISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMXXXXXXXXXXXXXXX 206
E+SP RGFL S PEVFI GI+ GYV N A S LP + WR+M
Sbjct: 153 EVSPASSRGFLNSFPEVFINAGIMLGYVSNLAFSNLPLKVGWRLMLGIGAVPSVILAIGV 212
Query: 207 XXMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKEXXXXXXXXXXXXXX 266
MPESPRWLVM+ R +AKRVL K SD+ EA RL+D IK A
Sbjct: 213 LAMPESPRWLVMQGRLGDAKRVLDKTSDSPTEATLRLED-IKHAAGIPADCHDDVVQVSR 271
Query: 267 XNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPV 326
N GEGVW++L+++PTPAVRR++IAA+GI+FF QASG DAV+ ++P +FK AG+
Sbjct: 272 RNSHGEGVWRELLIRPTPAVRRVMIAAIGIHFFQQASGIDAVVLFSPRIFKTAGLKTDHQ 331
Query: 327 LFGINVVMGLAKTFFVVLSALHLDKFGRRP 356
V +G+ KT F++++ LD+ GRRP
Sbjct: 332 QLLATVAVGVVKTSFILVATFLLDRIGRRP 361
|
|
| TAIR|locus:2052956 PMT1 "polyol/monosaccharide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1160 (413.4 bits), Expect = 8.8e-118, P = 8.8e-118
Identities = 234/486 (48%), Positives = 312/486 (64%)
Query: 27 NKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLA 86
++YAF CA+LAS+ SI+LGYDIGVMSGA ++IK+DL++++VQ+E+L+GILN++SL+GS A
Sbjct: 23 SRYAFACAILASMTSIILGYDIGVMSGASIFIKDDLKLSDVQLEILMGILNIYSLVGSGA 82
Query: 87 SGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTA 146
+G+TSD++GRRYTIV+A A F GAL MG A NYPF++VGR +AGIGVGY++MI+PVYTA
Sbjct: 83 AGRTSDWLGRRYTIVLAGAFFFCGALLMGFATNYPFIMVGRFVAGIGVGYAMMIAPVYTA 142
Query: 147 EISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMXXXXXXXXXXXXXXX 206
E++P RGFLTS PE+FI +GIL GYV NY S LP ++ WR M
Sbjct: 143 EVAPASSRGFLTSFPEIFINIGILLGYVSNYFFSKLPEHLGWRFMLGVGAVPSVFLAIGV 202
Query: 207 XXMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKEXXXXXXXXXXXXXX 266
MPESPRWLV++ R +A +VL K S+T++EA RLDD IK A
Sbjct: 203 LAMPESPRWLVLQGRLGDAFKVLDKTSNTKEEAISRLDD-IKRAVGIPDDMTDDVIVVPN 261
Query: 267 XNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPV 326
G+GVWKDL+++PTP+VR +LIA +GI+F QASG DAV+ Y+P +F AG+ K
Sbjct: 262 KKSAGKGVWKDLLVRPTPSVRHILIACLGIHFAQQASGIDAVVLYSPTIFSKAGLKSKND 321
Query: 327 LFGINVVMGLAKTFFVVLSALHLDKFGRRPXXXXXXXXXXXXXXXXXXXXXXXXXXTPTX 386
V +G+ KT F+V+ +D+FGRR
Sbjct: 322 QLLATVAVGVVKTLFIVVGTCVVDRFGRRALLLTSMGGMFLSLTALGTSLTVINRNPGQT 381
Query: 387 XXXXXXXXXXXXXSF---FSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISM 443
+F FSIG GP+TWVY SEIFP+RLRAQG++L + +NRL+SG+I M
Sbjct: 382 LKWAIGLAVTTVMTFVATFSIGAGPVTWVYCSEIFPVRLRAQGASLGVMLNRLMSGIIGM 441
Query: 444 TFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEEMQALFGG-----DNDDT 498
TFLS+S L+ GG F L AG+ +FF+ FLPET+G LEEM+ LFG N+
Sbjct: 442 TFLSLSKGLTIGGAFLLFAGVAAAAWVFFFTFLPETRGIPLEEMETLFGSYTANKKNNSM 501
Query: 499 SRDENE 504
S+D NE
Sbjct: 502 SKD-NE 506
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| TAIR|locus:2046333 AT2G18480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1150 (409.9 bits), Expect = 1.0e-116, P = 1.0e-116
Identities = 234/486 (48%), Positives = 312/486 (64%)
Query: 26 LNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSL 85
+NK+AF CA++ASI SI+ GYD GVMSGA ++I++DL+I + Q+EVL GILN+ +L+GSL
Sbjct: 18 MNKFAFGCAIVASIISIIFGYDTGVMSGAQIFIRDDLKINDTQIEVLAGILNLCALVGSL 77
Query: 86 ASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYT 145
+GKTSD IGRRYTI ++A FLVG++ MG PNYP L+VGR IAG+GVG++LMI+PVY+
Sbjct: 78 TAGKTSDVIGRRYTIALSAVIFLVGSVLMGYGPNYPVLMVGRCIAGVGVGFALMIAPVYS 137
Query: 146 AEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMXXXXXXXXXXXXXX 205
AEIS RGFLTSLPE+ I LGIL GYV NY L + WR+M
Sbjct: 138 AEISSASHRGFLTSLPELCISLGILLGYVSNYCFGKLTLKLGWRLMLGIAAFPSLILAFG 197
Query: 206 XXXMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKEXXXXXXXXXXXXX 265
MPESPRWLVM+ R +EAK++++ VS+TE+EA+ER D++ AA+
Sbjct: 198 ITRMPESPRWLVMQGRLEEAKKIMVLVSNTEEEAEERFRDILTAAEVDVTEIKEVGGGVK 257
Query: 266 XXNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKP 325
N G+ VW++L++KP PAVR +LIAAVGI+FF A+G +AV+ Y+P +FK AG+ K
Sbjct: 258 KKNH-GKSVWRELVIKPRPAVRLILIAAVGIHFFEHATGIEAVVLYSPRIFKKAGVVSKD 316
Query: 326 VLFGINVVMGLAKTFFVVLSALHLDKFGRRPXXXXXXXXXXXXXXXXXXXXXXXXXXTPT 385
L V +GL K FF++++ LDK GRR
Sbjct: 317 KLLLATVGVGLTKAFFIIIATFLLDKVGRRKLLLTSTGGMVFALTSLAVSLTMVQRFGRL 376
Query: 386 X-XXXXXXXXXXXXXSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMT 444
+FFSIGLGPITWVYSSEIFPLRLRAQG+++ ++VNR+++ +SM+
Sbjct: 377 AWALSLSIVSTYAFVAFFSIGLGPITWVYSSEIFPLRLRAQGASIGVAVNRIMNATVSMS 436
Query: 445 FLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEEMQALFGGDNDDTSRDENE 504
FLS++ ++ GG FF+ AGI FF+ LPETKG LEEM+ LFGG RD E
Sbjct: 437 FLSMTKAITTGGVFFVFAGIAVAAWWFFFFMLPETKGLPLEEMEKLFGGGGPRGDRDGLE 496
Query: 505 KQQTET 510
Q T+T
Sbjct: 497 IQ-TKT 501
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| TAIR|locus:2052971 PMT2 "polyol/monosaccharide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1140 (406.4 bits), Expect = 1.2e-115, P = 1.2e-115
Identities = 225/469 (47%), Positives = 305/469 (65%)
Query: 27 NKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLA 86
+++AF CA+LAS+ SI+LGYDIGVMSGA ++IK+DL++++VQ+E+L+GILN++SLIGS A
Sbjct: 23 SRFAFACAILASMTSIILGYDIGVMSGAAIFIKDDLKLSDVQLEILMGILNIYSLIGSGA 82
Query: 87 SGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTA 146
+G+TSD+IGRRYTIV+A F GAL MG A NYPF++VGR +AGIGVGY++MI+PVYT
Sbjct: 83 AGRTSDWIGRRYTIVLAGFFFFCGALLMGFATNYPFIMVGRFVAGIGVGYAMMIAPVYTT 142
Query: 147 EISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMXXXXXXXXXXXXXXX 206
E++P RGFL+S PE+FI +GIL GYV NY + LP +I WR M
Sbjct: 143 EVAPASSRGFLSSFPEIFINIGILLGYVSNYFFAKLPEHIGWRFMLGIGAVPSVFLAIGV 202
Query: 207 XXMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKEXXXXXXXXXXXXXX 266
MPESPRWLVM+ R +A +VL K S+T++EA RL+D IK A
Sbjct: 203 LAMPESPRWLVMQGRLGDAFKVLDKTSNTKEEAISRLND-IKRAVGIPDDMTDDVIVVPN 261
Query: 267 XNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPV 326
G+GVWKDL+++PTP+VR +LIA +GI+F QASG DAV+ Y+P +F AG+ K
Sbjct: 262 KKSAGKGVWKDLLVRPTPSVRHILIACLGIHFSQQASGIDAVVLYSPTIFSRAGLKSKND 321
Query: 327 LFGINVVMGLAKTFFVVLSALHLDKFGRRPXXXXXXXXXXXXXXXXXXXXXXXXXXTPTX 386
V +G+ KT F+V+ +D+FGRR
Sbjct: 322 QLLATVAVGVVKTLFIVVGTCLVDRFGRRALLLTSMGGMFFSLTALGTSLTVIDRNPGQT 381
Query: 387 XXXXXXXXXXXXXSF---FSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISM 443
+F FS+G GP+TWVY+SEIFP+RLRAQG++L + +NRL+SG+I M
Sbjct: 382 LKWAIGLAVTTVMTFVATFSLGAGPVTWVYASEIFPVRLRAQGASLGVMLNRLMSGIIGM 441
Query: 444 TFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEEMQALFG 492
TFLS+S L+ GG F L AG+ +FF+ FLPET+G LEE+++LFG
Sbjct: 442 TFLSLSKGLTIGGAFLLFAGVAVAAWVFFFTFLPETRGVPLEEIESLFG 490
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| TAIR|locus:2115415 PMT6 "polyol/monosaccharide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 833 (298.3 bits), Expect = 2.0e-115, Sum P(2) = 2.0e-115
Identities = 166/337 (49%), Positives = 227/337 (67%)
Query: 19 TGRQKKGLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNV 78
+G + G+N++A CA++ASI SI+ GYD GVMSGA+++I+EDL+ +VQ+EVL GILN+
Sbjct: 6 SGEKPAGVNRFALQCAIVASIVSIIFGYDTGVMSGAMVFIEEDLKTNDVQIEVLTGILNL 65
Query: 79 FSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSL 138
+L+GSL +G+TSD IGRRYTIV+A+ F++G++ MG PNYP L+ GR AG+GVG++L
Sbjct: 66 CALVGSLLAGRTSDIIGRRYTIVLASILFMLGSILMGWGPNYPVLLSGRCTAGLGVGFAL 125
Query: 139 MISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMXXXXXXX 198
M++PVY+AEI+ RG L SLP + I +GIL GY+ NY S LP +I WR+M
Sbjct: 126 MVAPVYSAEIATASHRGLLASLPHLCISIGILLGYIVNYFFSKLPMHIGWRLMLGIAAVP 185
Query: 199 XXXXXXXXXXMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKEXXXXXX 258
MPESPRWL+M+ R E K +L VS++ +EA+ R D IKAA
Sbjct: 186 SLVLAFGILKMPESPRWLIMQGRLKEGKEILELVSNSPEEAELRFQD-IKAAAGIDPKCV 244
Query: 259 XXXXXXXXXNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKG 318
GEGVWK+LIL+PTPAVRR+L+ A+GI+FF ASG +AV+ Y P +FK
Sbjct: 245 DDVVKMEGKKTHGEGVWKELILRPTPAVRRVLLTALGIHFFQHASGIEAVLLYGPRIFKK 304
Query: 319 AGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRR 355
AGI K LF + + +G+ KT F+ + L LDK GRR
Sbjct: 305 AGITTKDKLFLVTIGVGIMKTTFIFTATLLLDKVGRR 341
|
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| TAIR|locus:2051443 AT2G20780 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 799 (286.3 bits), Expect = 5.7e-107, Sum P(2) = 5.7e-107
Identities = 164/353 (46%), Positives = 223/353 (63%)
Query: 4 AEAGGPDDHQNVEAGTGRQKKGLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLE 63
++A +H+ EA R +K Y CA AS+N++LLGYD+GVMSGAVL+I++DL+
Sbjct: 33 SDAEESQNHREAEARNSRTRK----YVMACAFFASLNNVLLGYDVGVMSGAVLFIQQDLK 88
Query: 64 ITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFL 123
ITEVQ EVL+G L++ SL GSLA G+TSD IGR++T+ +AA F GA M +AP++ L
Sbjct: 89 ITEVQTEVLIGSLSIISLFGSLAGGRTSDSIGRKWTMALAALVFQTGAAVMAVAPSFEVL 148
Query: 124 IVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLP 183
++GR +AGIG+G +MI+PVY AEISPT+ RGF TS PE+FI LGIL GYV NYA SGL
Sbjct: 149 MIGRTLAGIGIGLGVMIAPVYIAEISPTVARGFFTSFPEIFINLGILLGYVSNYAFSGLS 208
Query: 184 GNINWRIMXXXXXXXXXXXXXXXXXMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERL 243
+I+WRIM +PESPRWLVMK R D A+ VL+K ++ + EA+ERL
Sbjct: 209 VHISWRIMLAVGILPSVFIGFALCVIPESPRWLVMKGRVDSAREVLMKTNERDDEAEERL 268
Query: 244 DDMIKAAKEXXXXXXXXXXXXXXXNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQAS 303
++ AA VW++L L P+P VR+MLI GI F Q +
Sbjct: 269 AEIQLAAAHTEGSED-------------RPVWREL-LSPSPVVRKMLIVGFGIQCFQQIT 314
Query: 304 GNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRP 356
G DA +YY+P + K AGI + L V +G+ KT F++ + +D GR+P
Sbjct: 315 GIDATVYYSPEILKEAGIQDETKLLAATVAVGVTKTVFILFATFLIDSVGRKP 367
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| TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 423 (154.0 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
Identities = 110/334 (32%), Positives = 163/334 (48%)
Query: 27 NKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQV---EVLVGILNVFSLIG 83
N Y A A I +L GYD GV+SGA+LYI++D + + E++V + +++G
Sbjct: 25 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVAGAIVG 84
Query: 84 SLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPV 143
+ G +D +GRR I++A FL+GA+ M APN L+VGR+ G+GVG + M +P+
Sbjct: 85 AAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTAPL 144
Query: 144 YTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMXXXXXXXXXXXX 203
Y +E SP RG L S I G Y+ N A + + G WR M
Sbjct: 145 YISEASPAKIRGALVSTNGFLITGGQFLSYLINLAFTDVTGT--WRWMLGIAGIPALLQF 202
Query: 204 XXXXXMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKEXXXXXXXXXXX 263
+PESPRWL K R +EAK +L ++ E +E I+A K+
Sbjct: 203 VLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVEQE-----IRALKDSVETEILEEGS 257
Query: 264 XXXXNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGI-- 321
N + L VRR LIA VG+ F Q G + V+YY+P + + AG
Sbjct: 258 SEKINM--------IKLCKAKTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLAGFAS 309
Query: 322 HRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRR 355
+R +L + V GL F ++S +D+ GR+
Sbjct: 310 NRTALLLSL-VTAGL-NAFGSIISIYFIDRIGRK 341
|
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| TAIR|locus:2130689 INT4 "inositol transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 392 (143.0 bits), Expect = 1.7e-55, Sum P(2) = 1.7e-55
Identities = 98/330 (29%), Positives = 156/330 (47%)
Query: 29 YAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQV---EVLVGILNVFSLIGSL 85
Y AL A I +L GYD GV+SGA+L+IKED + + + +V + +++G+
Sbjct: 26 YIMRLALSAGIGGLLFGYDTGVISGALLFIKEDFDEVDKKTWLQSTIVSMAVAGAIVGAA 85
Query: 86 ASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYT 145
G +D GRR +I++A FL+GA+ M AP +IVGR+ G GVG + M SP+Y
Sbjct: 86 VGGWINDKFGRRMSILIADVLFLIGAIVMAFAPAPWVIIVGRIFVGFGVGMASMTSPLYI 145
Query: 146 AEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMXXXXXXXXXXXXXX 205
+E SP RG L S + I G Y+ N A PG WR M
Sbjct: 146 SEASPARIRGALVSTNGLLITGGQFFSYLINLAFVHTPGT--WRWMLGVAGVPAIVQFVL 203
Query: 206 XXXMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKEXXXXXXXXXXXXX 265
+PESPRWL K R E++ +L ++ ++ E + +K + E
Sbjct: 204 MLSLPESPRWLYRKDRIAESRAILERIYPADEVEAEM--EALKLSVEAEKADEAIIGDSF 261
Query: 266 XXNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKP 325
+G + + P VRR L A + + Q G + V+YY+P++ + AG
Sbjct: 262 SAKL--KGAFGN------PVVRRGLAAGITVQVAQQFVGINTVMYYSPSIVQFAGYASNK 313
Query: 326 VLFGINVVMGLAKTFFVVLSALHLDKFGRR 355
++++ ++S + +D++GRR
Sbjct: 314 TAMALSLITSGLNALGSIVSMMFVDRYGRR 343
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| UNIPROTKB|Q96QE2 SLC2A13 "Proton myo-inositol cotransporter" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 3.2e-55, Sum P(2) = 3.2e-55
Identities = 100/357 (28%), Positives = 167/357 (46%)
Query: 1 METAEAGGPDDHQNVEAGTGRQ--KKGLNKYAFICALLASINSILLGYDIGVMSGAVLYI 58
+++A AGG ++E RQ + + ++ A+ +++ L GYD GV+SGA+L +
Sbjct: 51 LQSAGAGG-GGVGDLERAARRQFQQDETPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLL 109
Query: 59 KEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAP 118
K L + + E+LV + + +LA G + GRR I++A+A F G+ + A
Sbjct: 110 KRQLSLDALWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAAAN 169
Query: 119 NYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYA 178
N L+ GR++ G+G+G + M PVY AE+SP RG L ++ +FI G V + A
Sbjct: 170 NKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGA 229
Query: 179 LSGLPGNINWRIMXXXXXXXXXXXXXXXXXMPESPRWLVMKSRYDEAKRVLLKVSDTEQE 238
S L + WR M +PESPRWL+ K + +A+R+L ++ Q
Sbjct: 230 FSYLQKD-GWRYMLGLAAVPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGN-QT 287
Query: 239 AKERLDDMIKAAKEXXXXXXXXXXXXXXXNFTGEGVWKDLILKPTPAVRRMLIAAVGINF 298
E D + +E G + + L PT RR LI G+
Sbjct: 288 IDEEYDSIKNNIEEEEKEVGSA----------GPVICRMLSYPPT---RRALIVGCGLQM 334
Query: 299 FMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRR 355
F Q SG + ++YY+ + + +G+ + + V F ++ ++K GRR
Sbjct: 335 FQQLSGINTIMYYSATILQMSGVEDDRLAIWLASVTAFTNFIFTLVGVWLVEKVGRR 391
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| UNIPROTKB|F1PGX9 SLC2A13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 375 (137.1 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 98/351 (27%), Positives = 163/351 (46%)
Query: 7 GGPDDHQNVEAGTGRQ--KKGLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEI 64
GG ++E RQ + + ++ A+ +++ L GYD GV+SGA+L +K L +
Sbjct: 60 GGGGGGGDLERAARRQFQQDETPAFVYVAAVFSALGGFLFGYDTGVVSGAMLLLKRQLSL 119
Query: 65 TEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLI 124
+ E+LV + + +LA G + GRR I++A+A F G+ + A N L+
Sbjct: 120 DALWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFAAGSAVLAAAGNRETLL 179
Query: 125 VGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPG 184
GR++ G+G+G + M PVY AE+SP RG L ++ +FI G V + A S L
Sbjct: 180 AGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQK 239
Query: 185 NINWRIMXXXXXXXXXXXXXXXXXMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLD 244
+ WR M +PESPRWL+ K + +A+R+L ++ Q E D
Sbjct: 240 D-GWRYMLGLAAIPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGN-QTIDEEYD 297
Query: 245 DMIKAAKEXXXXXXXXXXXXXXXNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASG 304
+ +E G +++ L PT RR LI G+ F Q SG
Sbjct: 298 SIKNNIEEEEKEVGSA----------GPVIYRMLSYPPT---RRALIVGCGLQMFQQLSG 344
Query: 305 NDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRR 355
+ ++YY+ + + +G+ + + V F ++ ++K GRR
Sbjct: 345 INTIMYYSATILQMSGVEDDRLAIWLASVTAFTNFIFTLVGVWLVEKVGRR 395
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8VZ80 | PLT5_ARATH | No assigned EC number | 0.5534 | 0.9376 | 0.8923 | yes | no |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.3347 | 0.8382 | 0.9409 | yes | no |
| O52733 | XYLT_LACBR | No assigned EC number | 0.3264 | 0.8596 | 0.9649 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00016743001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (500 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 513 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-103 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 4e-94 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 7e-71 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 6e-25 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 1e-22 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-22 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-18 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 2e-15 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 2e-13 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-12 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 3e-11 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 2e-10 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 3e-10 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-08 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 2e-07 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 4e-07 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 4e-07 | |
| PRK10642 | 490 | PRK10642, PRK10642, proline/glycine betaine transp | 1e-06 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 4e-06 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 1e-05 | |
| PRK10406 | 432 | PRK10406, PRK10406, alpha-ketoglutarate transporte | 2e-05 | |
| TIGR00711 | 485 | TIGR00711, efflux_EmrB, drug resistance transporte | 3e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-05 | |
| PRK15075 | 434 | PRK15075, PRK15075, citrate-proton symporter; Prov | 2e-04 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 2e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 4e-04 | |
| PRK11652 | 394 | PRK11652, emrD, multidrug resistance protein D; Pr | 5e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 9e-04 | |
| COG0477 | 338 | COG0477, ProP, Permeases of the major facilitator | 0.001 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 315 bits (810), Expect = e-103
Identities = 156/472 (33%), Positives = 253/472 (53%), Gaps = 36/472 (7%)
Query: 33 CALLASINSILLGYDIGVMSGAVLYIK-----------EDLEITEVQVEVLVGILNVFSL 81
AL+A++ L GYD GV+ + IK + V ++V I +V L
Sbjct: 1 LALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCL 60
Query: 82 IGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPF--LIVGRMIAGIGVGYSLM 139
IGSL +GK D GR+ ++++ F++GAL G A F LIVGR+I G+GVG +
Sbjct: 61 IGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISV 120
Query: 140 ISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPA 199
+ P+Y +EI+P RG L SL ++ I GIL + L+ + WRI LGL VPA
Sbjct: 121 LVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPA 180
Query: 200 AVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPD 259
++ +G+L +PESPRWLV+K + +EA+ VL K + + + + + + S +
Sbjct: 181 ILLLIGLLFLPESPRWLVLKGKLEEARAVLAK-LRGVSDVDQEIQEEKDSLERSVEAEKA 239
Query: 260 DDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGA 319
L L VR+ L+ V + F Q +G +A+ YY+P +F+
Sbjct: 240 ----------------SWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETL 283
Query: 320 GIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKIL 379
G+ +L + +++G+ F ++ +D+FGRRPLLLLG++GM L+LG+ +
Sbjct: 284 GL-SDSLL--VTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGV 340
Query: 380 EGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSG 439
+ ++ I+ + F++FF++G GP+ WV SE+FPL +R + A+A + N L +
Sbjct: 341 --AKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANF 398
Query: 440 VISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEEMQALF 491
+I F I+ + G F + AG+ + +F + F+PETKG+TLEE+ LF
Sbjct: 399 LIGFLFPIITGAIG-GYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 294 bits (754), Expect = 4e-94
Identities = 162/484 (33%), Positives = 257/484 (53%), Gaps = 24/484 (4%)
Query: 15 VEAGTGRQKKGLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITE-------- 66
T + +L+A+I ++ GYD GV+ GA+ + + T
Sbjct: 11 ELLVTPAGLGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSS 70
Query: 67 VQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPN---YPFL 123
++V I V IG+L +G SD GR+ ++++ A F++GA+ MGLA L
Sbjct: 71 SLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEML 130
Query: 124 IVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLP 183
IVGR++ GIGVG + + P+Y +EI+P RG LTSL ++ I GIL Y F L
Sbjct: 131 IVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLN 190
Query: 184 GNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERL 243
+ WRI LGL +PA ++ +G+ +PESPRWLV K R +EA++ L ++ T E KE L
Sbjct: 191 NTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELL 250
Query: 244 DDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQAS 303
D + + ++ T +RR L V + +F Q +
Sbjct: 251 D--ELELID-----IKRSIEKRSVQPSWGSLFSS-----TRRIRRRLFLGVVLQWFQQFT 298
Query: 304 GNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSS 363
G +A++YY+P +F+ AG+ F +++++G F ++ +D+FGRRPLLL+G++
Sbjct: 299 GINAIMYYSPTIFENAGV-STDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAA 357
Query: 364 GMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLR 423
GM L +LGI + + I+ + F++FF++G GP+ WV SEIFPL LR
Sbjct: 358 GMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLR 417
Query: 424 AQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKT 483
+G ++A++ N L + ++ F ++ + GG F G+ +G IF Y FLPETKG+T
Sbjct: 418 PKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRT 477
Query: 484 LEEM 487
LEE+
Sbjct: 478 LEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 233 bits (596), Expect = 7e-71
Identities = 140/503 (27%), Positives = 235/503 (46%), Gaps = 67/503 (13%)
Query: 24 KGLNKYAFICALLASINSILLGYDIGVMSGAV----LYIKEDLEITEVQVEVLVGILNVF 79
+ + Y F L+A++ +L GYD V+SG V ++E L+G
Sbjct: 4 QYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVAS 63
Query: 80 SLIG----SLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVG--------- 126
+LIG G S+ GRR ++ +AA F + AL P + F +G
Sbjct: 64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALG-SAWPEFGFTSIGPDNTGYVPE 122
Query: 127 ----RMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGL 182
R+I GIGVG + M+SP+Y AEI+P RG L S + I+ G L Y NY ++
Sbjct: 123 FVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARS 182
Query: 183 PGN-----INWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQ 237
WR M A+PA + + + +PE+PR+L+ + + ++A+ +L K+
Sbjct: 183 GDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNT- 241
Query: 238 EAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGI- 296
A + L ++ + +G G GV + +G+
Sbjct: 242 LATQALQEIKHSLDHGRKTG---------GKLLMFGV---------------GVIVIGVM 277
Query: 297 -NFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRR 355
+ F Q G + V+YY P +FK G L +++G+ F VL+ + +DKFGR+
Sbjct: 278 LSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQ-TIIVGVINLTFTVLAIMTVDKFGRK 336
Query: 356 PLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSS 415
PL ++G+ GM + LG P +V +L ++ +V+ F++ GP+ WV S
Sbjct: 337 PLQIIGALGMAIGMFSLGT---AFYTQAPGIVALLSML---FYVAAFAMSWGPVCWVLLS 390
Query: 416 EIFPLRLRAQGSALAISVNRLVSGVISMTF------LSISHRLSFGGTFFLLAGITTVGT 469
EIFP +R + A+A++ + + +S TF + G ++++ + +
Sbjct: 391 EIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 450
Query: 470 IFFYVFLPETKGKTLEEMQALFG 492
+F + F+PETKGKTLEEM+AL+
Sbjct: 451 LFMWKFVPETKGKTLEEMEALWE 473
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 6e-25
Identities = 103/433 (23%), Positives = 174/433 (40%), Gaps = 70/433 (16%)
Query: 68 QVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGR 127
+V++ V L+GS G SD GR+ ++++ V + +PNY +V R
Sbjct: 128 KVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFR 187
Query: 128 MIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPG--- 184
++ G+G+G + + V E P +R ++G L F+ L LP
Sbjct: 188 LLVGMGIGGIWVQAVVLNTEFLPKKQR----------AIVGTLIQVFFSLGLVLLPLVAY 237
Query: 185 -NINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERL 243
+WR + ++P + + +PESPRWL+ + R +EA ++L ++ AK
Sbjct: 238 FIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRI------AKI-- 289
Query: 244 DDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQAS 303
+ K E + D K ++ + DL TP +R+ + M
Sbjct: 290 -NGKKLPAEVLSLSLEKDLSSSKKQYS----FLDLFR--TPNLRKTTLC------LMMLW 336
Query: 304 GNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSA-----LHLDKFGRRPLL 358
A YY + G G N+ + L + V L A L +D+ GRR +
Sbjct: 337 FTTAFSYYGLVLDLGN--------LGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTM 388
Query: 359 LLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIF 418
+LLLL + + L ++ F + ++Y++E++
Sbjct: 389 AASLLLAGVALLLLL----FVPVDLYFLRTALAVLGK-----FGITSAFQMVYLYTAELY 439
Query: 419 PLRLRAQGSALAISVNRLVSGVIS--MTFLS-ISHRLSFG--GTFFLLAGITTVGTIFFY 473
P +R G + ++ R V +IS + +L L G LLAGI T
Sbjct: 440 PTVVRNLGVGVCSTMAR-VGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILT------- 491
Query: 474 VFLPETKGKTLEE 486
+FLPETKG L E
Sbjct: 492 LFLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 1e-22
Identities = 90/429 (20%), Positives = 160/429 (37%), Gaps = 54/429 (12%)
Query: 21 RQKKGLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFS 80
+K+ L++Y + +L+ + ++ GYD+ M A I + + VQ+ L +
Sbjct: 6 IRKQPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGM 65
Query: 81 LIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMI 140
G+L G +D IGRR ++ + F V L LA N L++ R +AG+G+G +
Sbjct: 66 AFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPN 125
Query: 141 SPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPG-----NINWRIMLGLA 195
+E +P RG L + GY A+ G WR + +
Sbjct: 126 LNALVSEYAPKRFRGTAVGL--------MFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVG 177
Query: 196 AV-PAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESS 254
+ P ++ + + +PES +LV K R + +R++ ++ Q
Sbjct: 178 GIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQ----------------- 219
Query: 255 PSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPA 314
+ K + + + A +L+ + +FM G + + P
Sbjct: 220 -AEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLL---YFMLLVGVYFLTNWLPK 275
Query: 315 VFKGAGIHRKP---VLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLL 371
+ G N + F L+ D+ G R LLL
Sbjct: 276 LMVELGFSLSLAATGGALFNFGGVIGSIIFGWLA----DRLGPRV---------TALLLL 322
Query: 372 LGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAI 431
LG +L GST +L ++ A FF G + + +P +RA G AI
Sbjct: 323 LGAVFAVLVGSTLFSPTLLLLLGAIA--GFFVNGGQSGLYALMALFYPTAIRATGVGWAI 380
Query: 432 SVNRLVSGV 440
+ RL + +
Sbjct: 381 GIGRLGAII 389
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 2e-22
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 3/176 (1%)
Query: 35 LLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYI 94
LL + L G D G++S A+ + EDL ++ Q ++V ++ +GSL +G SD
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF 61
Query: 95 GRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKR 154
GRR +++ F +G+L + A + L+VGR + G+G G + AE P +R
Sbjct: 62 GRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKER 121
Query: 155 GFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIMP 210
G L LG L G + L+ G WR + + A+ ++ + +L +
Sbjct: 122 GRALGLFSAGFGLGALLGPLLGGLLAESLG---WRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 1e-18
Identities = 75/411 (18%), Positives = 137/411 (33%), Gaps = 69/411 (16%)
Query: 31 FICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKT 90
F+ A LA + LL LY+ EDL I+ ++ +L+ ++ + +G+
Sbjct: 2 FLAAFLAGLGRSLL------GPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRL 55
Query: 91 SDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISP 150
SD GRR +++ F +G L + A + L+V R++ G+G G + A+ P
Sbjct: 56 SDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFP 115
Query: 151 TMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGV-GVLIM 209
+RG L LG G + L+ L G WR + A+ A + V L++
Sbjct: 116 PEERGRALGLLSAGFGLGAALGPLLGGLLASLFG---WRAAFLILAILALLAAVLAALLL 172
Query: 210 PESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNF 269
P P P
Sbjct: 173 PRPP--------------------------------------------------PESKRP 182
Query: 270 TGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFG 329
++ + R + + + + A++ Y P + G+
Sbjct: 183 KPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLL 242
Query: 330 INVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVV 389
+ + L ++L L D+ GRR LLL ++ + L L +
Sbjct: 243 LGLAGLLGAIGRLLLGRL-SDRLGRRRRLLLALLLLILAALGLAL--------LSLTESS 293
Query: 390 LCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGV 440
L ++ + F + + P S++ P R S L + L +
Sbjct: 294 LWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-15
Identities = 103/455 (22%), Positives = 174/455 (38%), Gaps = 65/455 (14%)
Query: 77 NVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYP------FLIVGRMIA 130
++ +L G L G +D +GR+ + ++ +A GL+P L R
Sbjct: 66 SIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWL 125
Query: 131 GIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSG-YVFNYALSGLPGNIN-- 187
G+G+G +S + T+E + RG + + GIL+G V L+G ++
Sbjct: 126 GVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAA 185
Query: 188 -----------------WRIMLGLAAVPAAVIGVGVLIMPESPRW--LVMKSRYDEA--- 225
WRI++G AVPA + L +PE+PR+ V K A
Sbjct: 186 ADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDM 245
Query: 226 KRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKD-LILKPTP 284
VL + E + E+ ++ K S FT W+ L T
Sbjct: 246 SAVLQVKIEAEPDEVEKASTAVEVPKASW-----------SDFFTHFFKWRHGKHLLGTA 294
Query: 285 AVRRML-IAAVGINFFMQASGNDAVIYYTPAVFKGA--GIHRKPVLFGINVVMGLAKTFF 341
+L IA G+N Q A+ Y PA A +++ V I + G ++
Sbjct: 295 GSWFLLDIAFYGVNLN-QKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYW 353
Query: 342 VVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSF 401
V + +D GR+P+ L+G + +LG L + VL F
Sbjct: 354 V--TVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQF-------F 404
Query: 402 FSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLL 461
+ G T++ E+FP R R+ ++ + + + + FL ++ +
Sbjct: 405 ANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTG 464
Query: 462 AGITTV---------GTIFFYVFLPETKGKTLEEM 487
+ V I F + +PETKGK+LEE+
Sbjct: 465 IWMGHVLEIFALFMFLGILFTLLIPETKGKSLEEL 499
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 2e-13
Identities = 54/245 (22%), Positives = 102/245 (41%), Gaps = 22/245 (8%)
Query: 81 LIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMI 140
++G+ G +D +GR+ +++ + A Y F + R+++G G+G ++ I
Sbjct: 216 MVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPI 275
Query: 141 SPVYTAEISPTMKRGFLTSLPEVFIVLG----------ILSGYVFNYALSGLPGNINWRI 190
Y AE KRG S +F ++G I+ Y +++ + +WR+
Sbjct: 276 VFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRV 335
Query: 191 MLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAA 250
+ + A P + MPESPR+ + ++DEA +L + DT AK + +
Sbjct: 336 FVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVN 395
Query: 251 KESSPSGPDD------DQGP------PKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINF 298
+ D+ D G + G G+W + + P VR + I +G+ F
Sbjct: 396 HIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWF 455
Query: 299 FMQAS 303
+
Sbjct: 456 TLSFG 460
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 6e-12
Identities = 37/188 (19%), Positives = 68/188 (36%), Gaps = 10/188 (5%)
Query: 288 RMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSAL 347
L+ + + FF+ + G ++ Y P + + + GL +L L
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 348 HLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLG 407
D+ GRR LLLL + LLL P++ ++L + + F F+
Sbjct: 234 LSDRLGRRRLLLLIGLLLAALGLLLL-------ALAPSLALLLVALLLLGFGLGFAFPAL 286
Query: 408 PITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTV 467
SE+ P R S L + L + + + +GG F +LA + +
Sbjct: 287 LTLA---SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALL 343
Query: 468 GTIFFYVF 475
+ +
Sbjct: 344 AALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 78/425 (18%), Positives = 137/425 (32%), Gaps = 57/425 (13%)
Query: 52 SGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGA 111
S A ++EDL ++ Q + + ++G G D G R T+ V + V
Sbjct: 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFT 73
Query: 112 LAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILS 171
A Y L + R++ G + A P +R S +F L
Sbjct: 74 GLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVS---IFNSAQGLG 130
Query: 172 GYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIM----PESPRWLVMKSRYDEAKR 227
G + + + + +W+ + V + GV L P+ +WL
Sbjct: 131 GIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWL----------- 179
Query: 228 VLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVR 287
TE+E + ++ + PS P Q +K R
Sbjct: 180 -------TEEEKYIVVGGLLAEQQGKGPSTPKKYQ-----------------IKELLKDR 215
Query: 288 RMLIAAVGINFFMQASGNDAVIYYTPA-VFKGAGIHRKPVLFGINVVMGLAKTFFVVLSA 346
R+ A+G F+ G + + P + + G+ F + + G+ ++L
Sbjct: 216 RVWGLALG--QFLVNIGLGFFLTWFPTYLVQERGLSILEAGF-MASLPGIVGFIGMILGG 272
Query: 347 LHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGL 406
D RR L+ + L+ L ++A+ FF +G
Sbjct: 273 RLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVAL----GFFGLGA 328
Query: 407 GPITWVYSSEIFPLRLRAQGSALAISVNRL-------VSGVISMTFLSISHRLSFGGTFF 459
G I W S+ P + L S+ L V G I+ T S + L
Sbjct: 329 GAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALA 388
Query: 460 LLAGI 464
L+ +
Sbjct: 389 LIGAL 393
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 14/176 (7%)
Query: 30 AFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGK 89
AF A L + L G+D +++ + ++ + +T VQ L+ + G L G
Sbjct: 21 AFSAAWLGYL---LDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGA 77
Query: 90 TSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEIS 149
D GRR +V++ F VG LA G AP Y L + R++ G+G+ S Y E
Sbjct: 78 MGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESW 137
Query: 150 PTMKR----GFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAV 201
P R GFL S F + +++ V++ + WR + + +P
Sbjct: 138 PKHLRNKASGFLIS---GFSIGAVVAAQVYSLVVPVW----GWRALFFIGILPIIF 186
|
Length = 496 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 46/195 (23%), Positives = 75/195 (38%), Gaps = 4/195 (2%)
Query: 21 RQKKGLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFS 80
R AF A L + L +D +++ + + + +T V L+ +
Sbjct: 4 RHLTRAQWNAFSAAWLGWL---LDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISR 60
Query: 81 LIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMI 140
G+L G D GRR +V + F G LA G AP Y + + R++ GIG+G
Sbjct: 61 WFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGS 120
Query: 141 SPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAA 200
S Y E P R + L +G + Y+L WR + ++ +P
Sbjct: 121 SAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQV-YSLVVPVWGDGWRALFFISILPII 179
Query: 201 VIGVGVLIMPESPRW 215
+PE+ W
Sbjct: 180 FALWLRKNIPEAEDW 194
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 38/163 (23%), Positives = 79/163 (48%), Gaps = 4/163 (2%)
Query: 49 GVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRY-TIVVAAATF 107
G+++ LY++E L ++ + +L+ + + ++G+L G SD +GRR +++
Sbjct: 193 GLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLA 252
Query: 108 LVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVL 167
+G L + LAP+ L+V ++ G G+G++ +E++P RG + L F
Sbjct: 253 ALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGL---FNTF 309
Query: 168 GILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIMP 210
G L G + L + + + A A + + +L++P
Sbjct: 310 GSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 5/161 (3%)
Query: 50 VMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLV 109
V G + I DL ++E L+ + +G+ + + RR ++ A F+V
Sbjct: 31 VPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90
Query: 110 GALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGI 169
L LAP++ L++ R +AG+ G I+ A + P KRG +L + G+
Sbjct: 91 SNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALAL----VFTGL 146
Query: 170 LSGYVFNYALSGLPGN-INWRIMLGLAAVPAAVIGVGVLIM 209
V L G WR AV A + + + +
Sbjct: 147 TLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKL 187
|
Length = 394 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-07
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 4/133 (3%)
Query: 81 LIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMI 140
LI S SG +D GR+ ++V F++ L+ N LI+ R + G G ++L+
Sbjct: 12 LIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVA 71
Query: 141 SPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWR-IMLGLAAVPA 199
A+I P +RG L I LG L G L+ G WR L LA +
Sbjct: 72 GAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG---WRAPFLFLAILAL 128
Query: 200 AVIGVGVLIMPES 212
A + ++PE+
Sbjct: 129 AAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 14/135 (10%)
Query: 82 IGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYP--------FLIVGRMIAGIG 133
+G++ G D IGR+ T+V+ +G L +GL P+Y L++ R+I G
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109
Query: 134 VGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGN-----INW 188
+G + +Y AE +P KRGF S +V +G+L + LS L G+ W
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169
Query: 189 RIMLGLAAVPAAVIG 203
RI L + +IG
Sbjct: 170 RIPF-LVSAVLVLIG 183
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 96/433 (22%), Positives = 166/433 (38%), Gaps = 97/433 (22%)
Query: 82 IGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYP--------FLIVGRMIAGIG 133
+G L G D GR+ + + + +GL P+Y L++ +M G
Sbjct: 72 LGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFS 131
Query: 134 VGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNI------- 186
VG + ++ AE SP KRGF+ S ++ G ++G+V + L I
Sbjct: 132 VGGEYTGASIFVAEYSPDRKRGFMGS----WLDFGSIAGFVLGAGVVVLISTIVGEANFL 187
Query: 187 --NWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLD 244
WRI +A P +IG L ++ +E V EQ +E L
Sbjct: 188 DWGWRIPFFIAL-PLGIIG------------LYLRHALEETPAFQQHVDKLEQGDREGL- 233
Query: 245 DMIKAAKESSPSGPDDDQGPPKGNFTGEGV--WKDLILKPTPAVRRMLIAAVGINFFMQA 302
Q PK +F W+ L+ L+ A + ++M
Sbjct: 234 -----------------QDGPKVSFKEIATKHWRSLL------TCIGLVIATNVTYYM-- 268
Query: 303 SGNDAVIYYTPAVFKGAGIHRKP---VLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLL 359
++ Y P+ +H VL I +++G+ F + L D+FGRRP ++
Sbjct: 269 -----LLTYMPSYLS-HNLHYSEDHGVLIIIAIMIGM--LFVQPVMGLLSDRFGRRPFVI 320
Query: 360 LGSSGMVGSLLLLGIGSKILEGSTPTVVVV--LCIIAVCAFVSFFSIGLGPITWVYSS-- 415
LGS L +L I + IL S ++ L ++AV L T V +S
Sbjct: 321 LGSVA----LFVLAIPAFILINSNVIGLIFAGLLMLAVI---------LNCFTGVMASTL 367
Query: 416 -EIFPLRLRAQGSALAISVNRLVSGV---ISMTFLSISHRLSFGGTFFLLAGITTVGTIF 471
+FP +R A A +++ LV+G+ ++ + + L + ++ + + T
Sbjct: 368 PAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV 427
Query: 472 FYVFLPETKGKTL 484
+ ET + L
Sbjct: 428 ---TMKETANRPL 437
|
Length = 490 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 28/170 (16%), Positives = 66/170 (38%), Gaps = 18/170 (10%)
Query: 307 AVIYYTPAVF------KGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLL 360
+Y + + G+ L + + + L + LS D+ GRRP+L++
Sbjct: 232 TTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILF-FITIPLSGALSDRIGRRPVLII 290
Query: 361 GSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPL 420
++ +LL + + +L+ + T+ L + + +G E+FP
Sbjct: 291 F--TVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGP-MGSFL----PELFPT 343
Query: 421 RLRAQGSALAISVNRLVSG----VISMTFLSISHRLSFGGTFFLLAGITT 466
+R G++LA ++ + G I+ ++++ G + +
Sbjct: 344 EVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALALIG 393
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 17/108 (15%)
Query: 57 YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGL 116
Y+K DL ++ V +V N+ +++G G D++GRR V + G
Sbjct: 264 YLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSL--------LAGQ 315
Query: 117 APNYPFLIVGRMIAGIGVGYSLM---------ISPVYTAEISPTMKRG 155
P +G +A +G+G I P + E PT +R
Sbjct: 316 LLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRA 363
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 99/418 (23%), Positives = 161/418 (38%), Gaps = 97/418 (23%)
Query: 82 IGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYP--------FLIVGRMIAGIG 133
IG G+ +D GR+ +++++ G+L + P Y L++ R+ G+
Sbjct: 78 IGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLS 137
Query: 134 VGYSLMISPVYTAEISPTMKRGFLTSLPEVFIV----LGILSGYVFNYALSGLPGNI-NW 188
VG S Y +E++ ++GF S V ++ L +L V L W
Sbjct: 138 VGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGW 197
Query: 189 RIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIK 248
RI L AV A V WL +R L + S E A +
Sbjct: 198 RIPFALGAVLAVV-----------ALWL---------RRQLDETSQQETRALK------- 230
Query: 249 AAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAV 308
+ G KG +W++ RR I +G A+G+
Sbjct: 231 ------------EAGSLKG------LWRN---------RRAFIMVLGFT----AAGSLCF 259
Query: 309 IYYTPAVFK----GAGIHRKPVLFGINVVMGLAKTFFVVLSALH---LDKFGRRPLLLLG 361
+T + K AG+H + +M A F+++ L DK GRR +L
Sbjct: 260 YTFTTYMQKYLVNTAGMHANVA----SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLC- 314
Query: 362 SSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLR 421
G + +L + I S + S+P L + A+ VSF++ I+ + +E+FP +
Sbjct: 315 -FGSLAALFTVPILSALQNVSSPYAAFGLVMCAL-LIVSFYT----SISGILKAEMFPAQ 368
Query: 422 LRAQGSALAISV-NRLVSGVISMTFLSISHRLSFGG--TFFLLAGITTVGTIFFYVFL 476
+RA G L+ +V N L G LS+ S G FF +T + + F V L
Sbjct: 369 VRALGVGLSYAVANALFGGSAEYVALSLK---SIGMETAFFWY--VTLMAVVAFLVSL 421
|
Length = 432 |
| >gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 9/184 (4%)
Query: 30 AFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGK 89
I +L + ++L D +++ A+ I DL + QV+ ++ + + I +G
Sbjct: 3 LTIVLMLGTFMAVL---DSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGW 59
Query: 90 TSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEIS 149
+ G R +++ F +G+L G+APN +I+ R+I G G G + +S I
Sbjct: 60 LAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIY 119
Query: 150 PTMKRGFLTSLPEVFIVLGILSGYVFNYALSG-LPGNINWRIM-LGLAAVPAAVIGVGVL 207
P KRG ++ L +L L G + N +WR + L + V+ V
Sbjct: 120 PPEKRGRAMAI----WGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFF 175
Query: 208 IMPE 211
I+P
Sbjct: 176 ILPR 179
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 33/187 (17%), Positives = 63/187 (33%), Gaps = 12/187 (6%)
Query: 291 IAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLD 350
+ + + FF+ + P + + G+ I L +L+ D
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLS-ASQAGLIVSAFSLGYALGSLLAGYLSD 59
Query: 351 KFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPIT 410
+FGRR +LLLG LLL S + ++ + L P
Sbjct: 60 RFGRRRVLLLGLLLFALGSLLLAFASSLW-----------LLLVGRFLLGLGGGALYPAA 108
Query: 411 WVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTI 470
+E FP + R + L + L + + + ++ L + F +LA + + +
Sbjct: 109 AALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLAL 168
Query: 471 FFYVFLP 477
L
Sbjct: 169 LLLFLLR 175
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 19/134 (14%)
Query: 82 IGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNY-------PFLIV-GRMIAGIG 133
+G++ G D +GRR ++V + G L + P Y P L++ GR++ G
Sbjct: 71 LGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFS 130
Query: 134 VGYSLMISPVYTAEISPTMKRGFLTSL----PEVFIVLGILSGYVFNYALSGLPGNIN-- 187
G L VY AEI+ ++GF TS +V +V L GY+ N LS P +
Sbjct: 131 AGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLS--PAQMAEW 188
Query: 188 -WRI--MLGLAAVP 198
WRI ++G VP
Sbjct: 189 GWRIPFLIGCLIVP 202
|
Length = 434 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 14/155 (9%)
Query: 81 LIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMI 140
L G+L G+ +D IGR+ ++V+ A F + +LA A ++P L+V R++ G+G+G +L
Sbjct: 64 LPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPN 123
Query: 141 SPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGL-----PGNINWRIMLGL- 194
T+E RG SL + G F AL+ + G+ WR + +
Sbjct: 124 LIALTSEAVGPRLRGTAVSL--------MYCGVPFGGALASVIGVLAAGDAAWRHIFYVG 175
Query: 195 AAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVL 229
P ++ + + +PES + + VL
Sbjct: 176 GVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVL 210
|
Length = 406 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
Query: 34 ALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDY 93
L + +L G+ + + +E L ++ + +L+G+ + IG L G+ SD
Sbjct: 204 VLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDR 263
Query: 94 IGRRYTIVVAAATFLVGALAMGLAP---NYPFLIVGRMIAGIGVGYSLMISPVYTAEISP 150
+GRR +++A ++ AL + L + +L+V ++ G G G ++++P
Sbjct: 264 LGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAP 323
Query: 151 TMKRGFLTSLPEVFIVLGILSG 172
+RG + L LG G
Sbjct: 324 KEERGTASGLYNTAGSLGGALG 345
|
Length = 346 |
| >gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 88 GKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVG 135
G SD +GRR I+V + F++G L A + LI I G+G G
Sbjct: 64 GPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTG 111
|
Length = 394 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 9e-04
Identities = 25/153 (16%), Positives = 56/153 (36%), Gaps = 11/153 (7%)
Query: 330 INVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVV 389
+ L L+ D+FGRR +LL+G LLL +G +L ++ +++
Sbjct: 37 LLTAFSLGYALAQPLAGRLSDRFGRRRVLLIG-------LLLFALGLLLLLFASSLWLLL 89
Query: 390 LCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSIS 449
+ + + ++ FP R + L + L + + + ++
Sbjct: 90 VLRVLQGLGGGALFPAAAALI----ADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLA 145
Query: 450 HRLSFGGTFFLLAGITTVGTIFFYVFLPETKGK 482
+ F +LA + + + + LP +
Sbjct: 146 SLFGWRAAFLILAILALLAAVLAALLLPRPPPE 178
|
Length = 346 |
| >gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 41.2 bits (95), Expect = 0.001
Identities = 50/204 (24%), Positives = 91/204 (44%), Gaps = 7/204 (3%)
Query: 35 LLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEV--LVGILNVFSLIGSLASGKTSD 92
L ++ ++LLG D+G++S A+ + L ++ ++ L+ + IGSL +G D
Sbjct: 5 LALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGD 64
Query: 93 YIGRRYTIVVAAATFLVGALAMGLAPNYPF--LIVGRMIAGIGVGYSLMISPVYTAEISP 150
GRR +++ FL+G L + LAPN L++ R++ G+G G L ++ +E P
Sbjct: 65 RYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFP 124
Query: 151 TMKR--GFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLI 208
+ + LG+ G + L G WR LAA+ ++ + VL+
Sbjct: 125 EATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALLGLLLLILVLL 183
Query: 209 MPESPRWLVMKSRYDEAKRVLLKV 232
+ + A L K+
Sbjct: 184 LDLLLAAPRLPLAVGLALIELGKL 207
|
Length = 338 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.004
Identities = 41/176 (23%), Positives = 67/176 (38%), Gaps = 5/176 (2%)
Query: 45 GYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAA 104
G+D ++ + IK DL +T+++ L + G G +D GR+ ++ +
Sbjct: 31 GFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSI 90
Query: 105 ATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVF 164
+ VG GLA L + R I G+G+ + Y E P L S F
Sbjct: 91 VAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH----LKSKASAF 146
Query: 165 IVLGILSGYVF-NYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMK 219
+V G G + Y + WR + +P ++ PES W K
Sbjct: 147 LVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAK 202
|
Length = 426 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 513 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.98 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.98 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.98 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.97 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.97 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.97 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.96 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.96 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.96 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.96 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.96 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.96 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.96 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.96 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.95 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.95 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.95 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.95 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.95 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.95 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.95 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.95 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.94 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.94 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.94 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.94 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.94 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.94 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.94 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.94 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.94 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.93 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.93 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.93 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.93 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.93 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.93 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.92 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.92 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.92 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.92 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.92 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.92 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.92 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.91 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.91 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.91 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.91 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.9 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.89 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.89 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.89 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.89 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.88 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.88 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.88 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.88 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.87 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.87 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.87 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.87 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.87 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.86 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.85 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.85 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.84 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.83 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.83 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.82 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.82 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.8 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.78 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.78 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.77 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.76 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.75 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.74 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.72 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.72 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.69 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.68 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.64 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.62 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.62 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.61 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.59 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.57 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.57 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.48 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.45 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.41 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.39 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.39 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.38 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.35 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.35 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.31 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.3 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.29 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.28 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.23 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.23 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.19 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.18 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.17 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.13 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.1 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.08 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.06 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.04 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.03 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.03 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.99 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.99 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.98 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 98.97 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.96 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.96 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.96 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.95 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.93 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.92 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.91 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.91 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.91 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.89 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.89 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.89 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.87 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.87 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.86 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.86 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.86 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.85 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.85 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.83 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.82 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.81 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.79 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.78 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.77 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.76 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.75 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.75 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.75 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.75 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.74 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.73 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.73 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.73 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.72 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.71 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.71 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.7 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.7 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.69 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.69 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.69 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.68 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.68 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.67 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.66 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.66 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.65 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.65 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.65 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.64 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.63 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.62 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.62 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.62 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.61 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.59 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.53 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.52 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.51 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.51 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.5 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.47 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.47 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.47 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.45 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.44 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.43 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.43 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.43 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.41 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.41 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.41 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.39 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.37 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.35 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.34 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.32 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.26 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.26 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.23 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.23 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.21 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.2 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.2 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.17 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.16 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.15 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.15 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.14 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.12 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.11 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.1 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.07 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.04 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 97.95 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.94 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.93 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.93 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.92 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.89 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.89 | |
| PRK11462 | 460 | putative transporter; Provisional | 97.74 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 97.53 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.53 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 97.48 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.45 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 97.44 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.38 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.36 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.35 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.31 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 97.29 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.24 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.08 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.08 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.06 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.02 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 96.92 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 96.89 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.79 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 96.61 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.56 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.45 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.37 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.36 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 96.13 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.06 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 95.99 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 95.82 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 95.55 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 95.51 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 94.73 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 93.63 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 93.28 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 92.74 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 91.99 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 91.41 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 91.36 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 89.05 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 87.98 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 85.43 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 84.35 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 84.31 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 84.03 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 81.32 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=398.34 Aligned_cols=449 Identities=30% Similarity=0.516 Sum_probs=365.1
Q ss_pred chHHHHHHHHHHHHHHHHhhcccccchhhHHHH--------hhhC--CCchh----HHHHHHHHHHHHHHHHhhcccccc
Q 010317 27 NKYAFICALLASINSILLGYDIGVMSGAVLYIK--------EDLE--ITEVQ----VEVLVGILNVFSLIGSLASGKTSD 92 (513)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~~--~s~~~----~~~~~s~~~~g~~ig~~~~g~l~d 92 (513)
.+.....+..+.++++-.||..+.+|...+.++ +.++ +++++ .+...+++.+|.++|+++.++++|
T Consensus 6 t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~ 85 (485)
T KOG0569|consen 6 TRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLAD 85 (485)
T ss_pred cHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666667999999999998765443 3334 44444 345788999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHH
Q 010317 93 YIGRRYTIVVAAATFLVGALAMGL---APNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGI 169 (513)
Q Consensus 93 r~GRr~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~ 169 (513)
|+|||.++.++.++..++++...+ .+++++++++|++.|+..|......+.|+.|+.|++.||....+.+.+..+|.
T Consensus 86 ~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ 165 (485)
T KOG0569|consen 86 RFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGI 165 (485)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHH
Confidence 999999999999999888876665 57899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHhccCCCchhHHh-cCCHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010317 170 LSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVM-KSRYDEAKRVLLKVSDTEQEAKERLDDMIK 248 (513)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~~lpEsp~~l~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 248 (513)
+++..++..- -+.+...|++.+.+..+|+++..+...++||||||+.. |||.|||++.++++++.++++++..++..+
T Consensus 166 ll~~~~~l~~-ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e 244 (485)
T KOG0569|consen 166 LLGQVLGLPS-LLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLRE 244 (485)
T ss_pred HHHHHHccHH-hcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence 9987664321 12245579999999999999999999999999999998 899999999999998765432222211111
Q ss_pred HHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHH
Q 010317 249 AAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLF 328 (513)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 328 (513)
.+.++ .+. ..+..++++++ .+.+|+.....+.+....|.++.+.+.+|+..++++.|.......+
T Consensus 245 ~~~~~-~~~------------~~~~sl~~~~~--~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~ 309 (485)
T KOG0569|consen 245 IEEEE-LEK------------KKQISLRQLLK--NPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQY 309 (485)
T ss_pred HHHhc-ccc------------ccCCcHHHHhc--CcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHH
Confidence 11110 000 11224556665 3567887788888888999999999999999999999877765554
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccc
Q 010317 329 GINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGP 408 (513)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (513)
.+...++...+.++++.+++||.|||++++.+..++.++.+++.+...+..... .+..+.++.+.+.+..+|+.|++|
T Consensus 310 -an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~-~~~~y~~i~~~~~~~~~f~~G~gp 387 (485)
T KOG0569|consen 310 -ANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG-SWLSYLCIAAIFLFIISFAIGPGP 387 (485)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhhhcCCCc
Confidence 778888999999999999999999999999998888887777766554432222 455666778888888999999999
Q ss_pred eeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhheecccCCCCCHHHHH
Q 010317 409 ITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEEMQ 488 (513)
Q Consensus 409 ~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~e~~ 488 (513)
++|.+.+|++|+..|+.+.+++..++++...++...++++.+..+. ..|+++.+.+.+.+++.++++||||||+.+|+.
T Consensus 388 i~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~ 466 (485)
T KOG0569|consen 388 IPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEII 466 (485)
T ss_pred hhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHH
Confidence 9999999999999999999999999999999999999999887774 788999999999999999999999999999998
Q ss_pred hHhcCC
Q 010317 489 ALFGGD 494 (513)
Q Consensus 489 ~~~~~~ 494 (513)
+.+++.
T Consensus 467 ~~~~~~ 472 (485)
T KOG0569|consen 467 EELEKR 472 (485)
T ss_pred HHHHhC
Confidence 877554
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-46 Score=381.81 Aligned_cols=452 Identities=39% Similarity=0.708 Sum_probs=365.2
Q ss_pred CCchHHHHHHHHHHHHHHHHhhc--ccccchhhHHHHhhhC-----CCc--hhHHHHHHHHHHHHHHHHhhccccccccC
Q 010317 25 GLNKYAFICALLASINSILLGYD--IGVMSGAVLYIKEDLE-----ITE--VQVEVLVGILNVFSLIGSLASGKTSDYIG 95 (513)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~-----~s~--~~~~~~~s~~~~g~~ig~~~~g~l~dr~G 95 (513)
...+.....+..+.+..+..|+| ....++....++++.. .+. .+.+++.+++++|..+|++++|+++|++|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~G 117 (513)
T KOG0254|consen 38 MISPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIG 117 (513)
T ss_pred cCceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556667777888888999997 6677777777776432 112 34589999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHH
Q 010317 96 RRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVF 175 (513)
Q Consensus 96 Rr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~ 175 (513)
||++++++.+.+.++++++++++|+.+++++|++.|+|.|....+.+.|++|..|++.||...+..+....+|.+++++.
T Consensus 118 Rk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~ 197 (513)
T KOG0254|consen 118 RKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCI 197 (513)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHHhcCCCCCcchHHHHHhhhHHHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcC-ChHHHHHHHHHHHHHH-hhc
Q 010317 176 NYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSD-TEQEAKERLDDMIKAA-KES 253 (513)
Q Consensus 176 ~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~ 253 (513)
+...... . .+||+.+.+..+|+++..+..+++||||+|+.++||.+++++.+.++.+ .+.+...+.++...+. .+.
T Consensus 198 ~~~~~~~-~-~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~ 275 (513)
T KOG0254|consen 198 NYGTSKV-Y-AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEA 275 (513)
T ss_pred hhhhccC-C-ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhh
Confidence 7665543 1 5899999999999999888889999999999999999999999999987 3333333333332111 110
Q ss_pred CCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHH
Q 010317 254 SPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVV 333 (513)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 333 (513)
... ..+..+++++. +..+++.+..+.+..++|.++.+...+|.+.+++..+...+. ......
T Consensus 276 ~~~-------------~~~~~~~~l~~---~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~--~~~~~~ 337 (513)
T KOG0254|consen 276 EVA-------------EGKASWGELFS---PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT--FLASII 337 (513)
T ss_pred hcc-------------cccccHHHhcC---cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch--HHHHHH
Confidence 000 00012444443 567788888888888999999999999999999988876654 446677
Q ss_pred HhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCC--CchhHHHHHHHHHHHHHHHHhccccceee
Q 010317 334 MGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGS--TPTVVVVLCIIAVCAFVSFFSIGLGPITW 411 (513)
Q Consensus 334 ~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (513)
.++...++.+++.+++||+|||+.++.+..++.++.++++......... .........+...+.+...++.+.++++|
T Consensus 338 ~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w 417 (513)
T KOG0254|consen 338 LGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPW 417 (513)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchh
Confidence 8888889999999999999999999999999999988888765543221 12233344556667777889999999999
Q ss_pred eeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH-hhheecccCCCCCHHHHHhH
Q 010317 412 VYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTI-FFYVFLPETKGKTLEEMQAL 490 (513)
Q Consensus 412 ~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pet~~~~~~e~~~~ 490 (513)
++.+|+||.+.|+.+.+++..++++.+.++...++......+.+..|..+++.+.+..+ +++++.||||++++||+++.
T Consensus 418 ~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~ 497 (513)
T KOG0254|consen 418 VIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINEL 497 (513)
T ss_pred hhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHH
Confidence 99999999999999999999999999998888877776654445677777777777777 78899999999999999887
Q ss_pred hcCCCC
Q 010317 491 FGGDND 496 (513)
Q Consensus 491 ~~~~~~ 496 (513)
+.....
T Consensus 498 ~~~~~~ 503 (513)
T KOG0254|consen 498 FEEGIK 503 (513)
T ss_pred HHcCCc
Confidence 755433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=372.94 Aligned_cols=441 Identities=21% Similarity=0.292 Sum_probs=311.6
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhhcccccchhhHHHHhhh-----CCCchhHHHHHHHHHHHHHHHHhhccccccccCch
Q 010317 23 KKGLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDL-----EITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRR 97 (513)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr 97 (513)
+.+..++++.++.++.++.+.+|||.+.++...|.+.+++ +.++.+.+++.+.+.+++.+|++++|+++||+|||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr 86 (502)
T TIGR00887 7 TAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRK 86 (502)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 3456778888888899999999999999999998877642 45666788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCc------HHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHH
Q 010317 98 YTIVVAAATFLVGALAMGLAPN------YPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILS 171 (513)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~ 171 (513)
+++.++++++.+++++++++++ +..++++|++.|++.|...+..+.|++|++|+++|++.+++.+.+..+|.++
T Consensus 87 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~ 166 (502)
T TIGR00887 87 RVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILA 166 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876 7899999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHhcC-C-------------------CCCcchHHHHHhhhHHHHHHHHHHhccCCCchhHHhcCCHH-HHHHHHH
Q 010317 172 GYVFNYALSG-L-------------------PGNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYD-EAKRVLL 230 (513)
Q Consensus 172 ~~~~~~~~~~-~-------------------~~~~~Wr~~~~~~~~~~~i~~~~~~~lpEsp~~l~~~~~~~-~a~~~~~ 230 (513)
+..++..+.. . ..+++||+++.+.++|+++..+..+++||||||+..|+|.| ++.+.+.
T Consensus 167 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~ 246 (502)
T TIGR00887 167 GAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMS 246 (502)
T ss_pred HHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHH
Confidence 8776543321 1 11348999999999999888888889999999999998875 4666555
Q ss_pred HhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCC-hhHHHHHHHHHHHHHHhhhccchhhh
Q 010317 231 KVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPT-PAVRRMLIAAVGINFFMQASGNDAVI 309 (513)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (513)
+..+.+.+++. ++. ++.++ +. ...+..|+++++.+. +..++.++.. ...++.+...+++..
T Consensus 247 ~~~~~~~~~~~--~~~-~~~~~-------~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~y~~~ 308 (502)
T TIGR00887 247 AVLQVKIEAEP--DEV-EKAST-------AV-------EVPKASWSDFFTHFFKWRHGKHLLGT-AGSWFLLDIAFYGVN 308 (502)
T ss_pred HHhccccccCc--ccc-cchhc-------cc-------cchhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHccc
Confidence 54322111000 000 00000 00 001123555554211 1222222222 222333334455667
Q ss_pred ccHHHHHHhCCCCCchh-----------HHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhc
Q 010317 310 YYTPAVFKGAGIHRKPV-----------LFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKI 378 (513)
Q Consensus 310 ~~~p~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 378 (513)
.|.|.+++..|.+.... .........++..++.++++++.||+|||+.++.+..++.++..+++.....
T Consensus 309 ~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~ 388 (502)
T TIGR00887 309 LNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH 388 (502)
T ss_pred cccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899988776543211 1112223344556678889999999999999887766555555444432210
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc------
Q 010317 379 LEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRL------ 452 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------ 452 (513)
..... ... .......++..+.++..|.+++|++|++.|+++.|+.+.++++++.+.+..++.+.+..
T Consensus 389 --~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 461 (502)
T TIGR00887 389 --LSTHG---FLA--IYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGY 461 (502)
T ss_pred --cchhH---HHH--HHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccc
Confidence 01111 111 11112223455667788999999999999999999999999998888888887776532
Q ss_pred ----ccchhHHHHHHHHHHHHHhhheecccCCCCCHHHHHh
Q 010317 453 ----SFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEEMQA 489 (513)
Q Consensus 453 ----~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~e~~~ 489 (513)
++...|++++++++++.++ ++++|||++|++||+++
T Consensus 462 ~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 462 PTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSLEELSG 501 (502)
T ss_pred cccccchHHHHHHHHHHHHHHHH-heEeccCCCCCHHhhhC
Confidence 2334677787777776665 46789999999988754
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=367.16 Aligned_cols=445 Identities=21% Similarity=0.307 Sum_probs=318.1
Q ss_pred CchHHHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHH
Q 010317 26 LNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAA 105 (513)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~ 105 (513)
..+++|.++++..+..+.+++|...++...|.++++++++..+.+++.+++++|+++|++++|+++||+|||++++++++
T Consensus 161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li 240 (742)
T TIGR01299 161 HGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS 240 (742)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 46778888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcC-C--
Q 010317 106 TFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSG-L-- 182 (513)
Q Consensus 106 ~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~-~-- 182 (513)
++++++++++++++++.++++|++.|++.|+..++...+++|++|++.|++..++...++.+|.++++.+++.+.. .
T Consensus 241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~ 320 (742)
T TIGR01299 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW 320 (742)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998888766544321 1
Q ss_pred -------CCCcchHHHHHhhhHHHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHH----HHHHHH-HHHHHH
Q 010317 183 -------PGNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQE----AKERLD-DMIKAA 250 (513)
Q Consensus 183 -------~~~~~Wr~~~~~~~~~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~----~~~~~~-~~~~~~ 250 (513)
....+||+++++.+++.++.++..+++||||+|+..++|.+||.++++++...+.. ..+.+. +..+..
T Consensus 321 ~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~ 400 (742)
T TIGR01299 321 SFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTI 400 (742)
T ss_pred hhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHh
Confidence 12347999999999998888888889999999999999999999999988754321 111110 000000
Q ss_pred hhcCC-CCCCCCCCCCC------CCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhC----
Q 010317 251 KESSP-SGPDDDQGPPK------GNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGA---- 319 (513)
Q Consensus 251 ~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---- 319 (513)
+..++ .+.+....... ........|.+......+.++++++....+ ++....+++++..|+|.+++..
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~-wf~~~~~yygl~~w~P~~~~~~~~~~ 479 (742)
T TIGR01299 401 HQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGV-WFTLSFGYYGLSVWFPDMIKHLQADD 479 (742)
T ss_pred hhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00000000000 000001122222211234566666665544 4556678899999999876431
Q ss_pred --------------------------------------CC-----C----------------C-----------------
Q 010317 320 --------------------------------------GI-----H----------------R----------------- 323 (513)
Q Consensus 320 --------------------------------------~~-----~----------------~----------------- 323 (513)
+. . .
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 559 (742)
T TIGR01299 480 YAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENT 559 (742)
T ss_pred HHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhcccc
Confidence 00 0 0
Q ss_pred ------------------------------c----hhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHH
Q 010317 324 ------------------------------K----PVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSL 369 (513)
Q Consensus 324 ------------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~ 369 (513)
+ ...+..+.+.+++..++.+++++++||+|||++++++.++..++.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ 639 (742)
T TIGR01299 560 DFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISC 639 (742)
T ss_pred chhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 0 011333556678889999999999999999999887766555554
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010317 370 LLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSIS 449 (513)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 449 (513)
++++... ...... . ..+ ...++..+..+..+.+++|++|++.|+++.|+.++++++++++.+.+...+.
T Consensus 640 ll~~~~~------s~~~ll-~---~~~-l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~ 708 (742)
T TIGR01299 640 FFLSFGN------SESAMI-A---LLC-LFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFV 708 (742)
T ss_pred HHHHHHc------cHHHHH-H---HHH-HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443211 111111 1 111 1122222334456789999999999999999999999998888777765555
Q ss_pred HhcccchhHHHHHHHHHHHHHhhheecccCCCCCH
Q 010317 450 HRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTL 484 (513)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 484 (513)
.. ....+|++++++.++++++.+ ++|||+++.+
T Consensus 709 ~~-~~~~pf~i~a~~lll~~ll~~-~LPET~~~~l 741 (742)
T TIGR01299 709 GI-TKAAPILFASAALACGGLLAL-KLPDTRGQVL 741 (742)
T ss_pred Hh-hhHHHHHHHHHHHHHHHHHHH-hCCCCccccc
Confidence 43 344567777777777666554 5699998764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-43 Score=319.09 Aligned_cols=431 Identities=20% Similarity=0.274 Sum_probs=318.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHH
Q 010317 25 GLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAA 104 (513)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~ 104 (513)
+..++++...+.+.++++-+.+.....+...|.+++.++++..+..+++...+.|+.+|+..+|..+|++|||+.+....
T Consensus 71 gfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~ 150 (528)
T KOG0253|consen 71 GFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTF 150 (528)
T ss_pred CcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhH
Confidence 55677888888888899888888888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCC
Q 010317 105 ATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPG 184 (513)
Q Consensus 105 ~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 184 (513)
+...+...+.++++|+..+++.|.+.|+|.|+ .+...++-.|..|...|+..+.+. .++.+|.+....+++... .
T Consensus 151 l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm---~ 225 (528)
T KOG0253|consen 151 LVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVM---S 225 (528)
T ss_pred HHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHH---H
Confidence 99999999999999999999999999999999 777778889999999999998887 899999999988887664 3
Q ss_pred CcchHHHHHhhhHHHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHH-------HHHHHHHHHHHhhcCCCC
Q 010317 185 NINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEA-------KERLDDMIKAAKESSPSG 257 (513)
Q Consensus 185 ~~~Wr~~~~~~~~~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 257 (513)
+.||||.......|..++....+++||||||+..+|+.+||.+.++++...+... ....++..+++...
T Consensus 226 ~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~---- 301 (528)
T KOG0253|consen 226 NFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDL---- 301 (528)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhch----
Confidence 5699999988889999999999999999999999999999999999886433211 00000000110000
Q ss_pred CCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCC---CC------------
Q 010317 258 PDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAG---IH------------ 322 (513)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~------------ 322 (513)
++ ...++.........+++ .|.+|+.++.... .+|.....+++.......+++... ..
T Consensus 302 -~~--~~~~a~ke~rg~~~nLl---sp~lrkttlllw~-iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~ 374 (528)
T KOG0253|consen 302 -DD--SKSSAAKEVRGGTTNLL---SPKLRKTTLLLWR-IWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRA 374 (528)
T ss_pred -hh--hhhccccccccchHhhc---ChHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhh
Confidence 00 00000011112234443 3667777665543 334444444554444444443211 00
Q ss_pred ----CchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHH
Q 010317 323 ----RKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAF 398 (513)
Q Consensus 323 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (513)
.+..-+--.++..+..++|.++.++++||+|||+.|..+.+.+.++.+++..+- ..+ .... ..+.
T Consensus 375 ~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~-----~rn-~~tv-----llf~ 443 (528)
T KOG0253|consen 375 NCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK-----TRN-AYTV-----LLFT 443 (528)
T ss_pred cCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc-----Ccc-hhHH-----HHHH
Confidence 011123344567788999999999999999999999888776665555444321 111 1111 1122
Q ss_pred HHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhheeccc
Q 010317 399 VSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPE 478 (513)
Q Consensus 399 ~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 478 (513)
..+|..+...+.|+|++|+||+.+|++|.|.|++++|+++++.+.+- +........+..+++++++++++.++++.-|
T Consensus 444 arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiE 521 (528)
T KOG0253|consen 444 ARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIE 521 (528)
T ss_pred HHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeec
Confidence 23444444458899999999999999999999999999766655543 3344445567888899999999998888889
Q ss_pred CCCCCH
Q 010317 479 TKGKTL 484 (513)
Q Consensus 479 t~~~~~ 484 (513)
||||++
T Consensus 522 tkGR~l 527 (528)
T KOG0253|consen 522 TKGRSL 527 (528)
T ss_pred cCCCCC
Confidence 999974
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=344.87 Aligned_cols=436 Identities=30% Similarity=0.556 Sum_probs=320.5
Q ss_pred chHHHHHHHHHHHHHHHHhhcccccchhhHHHHhhh--------CCCchhHHHHHHHHHHHHHHHHhhccccccccCchH
Q 010317 27 NKYAFICALLASINSILLGYDIGVMSGAVLYIKEDL--------EITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRY 98 (513)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~ 98 (513)
.+++..++.++.++.+.+|||.+.+++..|.+++++ +.++++.++..+++.++..++++++|+++||+|||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~ 86 (479)
T PRK10077 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (479)
T ss_pred chHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 345666777888899999999999999999999888 788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc------------CcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHH
Q 010317 99 TIVVAAATFLVGALAMGLA------------PNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIV 166 (513)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~------------~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~ 166 (513)
++.++.+++.++.+.++++ +++..++++|+++|++.|...+....+++|++|+++|++++++.+....
T Consensus 87 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~ 166 (479)
T PRK10077 87 SLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAII 166 (479)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHH
Confidence 9999999999998888763 2256788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC-----CCCCcchHHHHHhhhHHHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHH
Q 010317 167 LGILSGYVFNYALSG-----LPGNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKE 241 (513)
Q Consensus 167 ~G~~~~~~~~~~~~~-----~~~~~~Wr~~~~~~~~~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~ 241 (513)
+|.+++++++..+.. .....+||+.|++.+++.++..+..+++||||+|+..++|.|++++..++..+.++. ++
T Consensus 167 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~-~~ 245 (479)
T PRK10077 167 FGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLA-TQ 245 (479)
T ss_pred HHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhH-HH
Confidence 998888777654432 123569999999988888777777788999999999999999988877776543321 11
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCC
Q 010317 242 RLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGI 321 (513)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 321 (513)
..++..+..++... . .+..+. ...........+..+.+..+.+...+|.|.+++..+.
T Consensus 246 ~~~~~~~~~~~~~~--------------~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~ 303 (479)
T PRK10077 246 ALQEIKHSLDHGRK--------------T----GGKLLM----FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGA 303 (479)
T ss_pred HHHHHHHHHHHhhh--------------h----hhhhcc----hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCC
Confidence 11111111100000 0 000000 0111222223334455566677778888998887765
Q ss_pred CCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHH
Q 010317 322 HRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSF 401 (513)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (513)
...... ......++...++.++++++.||+|||+.++.+.+.+.++.+.++.... . ...... .......+...
T Consensus 304 ~~~~~~-~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~--~-~~~~~~---~~~~~~~~~~~ 376 (479)
T PRK10077 304 STDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY--T-QAPGIV---ALLSMLFYVAA 376 (479)
T ss_pred CCchHH-HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh--c-CcccHH---HHHHHHHHHHH
Confidence 544332 2444566778888999999999999999998887766666555543221 1 111111 11222223333
Q ss_pred HhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHH------HhcccchhHHHHHHHHHHHHHhhhee
Q 010317 402 FSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSIS------HRLSFGGTFFLLAGITTVGTIFFYVF 475 (513)
Q Consensus 402 ~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (513)
+.....+..+.+++|++|++.|+++.|+.+.++++++.+.+..++.+. +..+....|+++++++++++++.+++
T Consensus 377 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
T PRK10077 377 FAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF 456 (479)
T ss_pred HhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhc
Confidence 444445677899999999999999999999999998888777776544 34455667888888888887777788
Q ss_pred cccCCCCCHHHHHhHhc
Q 010317 476 LPETKGKTLEEMQALFG 492 (513)
Q Consensus 476 ~pet~~~~~~e~~~~~~ 492 (513)
.||||++++||+++.++
T Consensus 457 ~~e~~~~~~~~~~~~~~ 473 (479)
T PRK10077 457 VPETKGKTLEEMEALWE 473 (479)
T ss_pred cccCCCCCHHHHHHHHh
Confidence 99999999998877654
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-48 Score=394.98 Aligned_cols=432 Identities=34% Similarity=0.658 Sum_probs=320.8
Q ss_pred HHHHHHHHhhcccccchhhHHHH--hhhCC---------CchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHH
Q 010317 37 ASINSILLGYDIGVMSGAVLYIK--EDLEI---------TEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAA 105 (513)
Q Consensus 37 ~~~~~~~~g~~~~~~~~~~~~~~--~~~~~---------s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~ 105 (513)
+.++.+.+|||...++...+... ...+. ++.+.++..++.++|..+|++++|+++||+|||+++.++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~ 84 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL 84 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 35566889999888877665443 12221 12346889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC---cHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCC
Q 010317 106 TFLVGALAMGLAP---NYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGL 182 (513)
Q Consensus 106 ~~~i~~~~~~~~~---~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 182 (513)
+..+++++.++++ |++.++++|++.|++.|+..+..+.|+.|..|+++|++..++.+.++.+|.+++.++++.....
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 164 (451)
T PF00083_consen 85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY 164 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999 9999999999999999999999999999999999999999999999999999888777665433
Q ss_pred CCCcchHHHHHhhhHHHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 010317 183 PGNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQ 262 (513)
Q Consensus 183 ~~~~~Wr~~~~~~~~~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (513)
.++.+||+.+++.+++.++..+..+++||||||+..|+|.|||++.+++.++.+.++++ .++..++.++.
T Consensus 165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~-~~~~~~~~~~~--------- 234 (451)
T PF00083_consen 165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEE-IEEIKAEKKES--------- 234 (451)
T ss_pred cccccccccccccccccccccccccccccccceeccccccccccccccccccccccccc-ccccccccccc---------
Confidence 33467999999999999888888889999999999999999999998886543222111 11110100000
Q ss_pred CCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHH
Q 010317 263 GPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFV 342 (513)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (513)
.+.+..++++++.+. .++++...+.+..+.+..+.+...+|.|.+++..+.+.. ...+...++...++.
T Consensus 235 ------~~~~~~~~~l~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~ 303 (451)
T PF00083_consen 235 ------QESKASWRDLFRNKK--YRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS---FLATLILGLVNFLGT 303 (451)
T ss_pred ------cccceeeeecccccc--ccccccccccccccccccccccccccccccccccccccc---ccccccccccccccc
Confidence 000123444444322 344555555555566667777788888888877665554 224445556677777
Q ss_pred HHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhh
Q 010317 343 VLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRL 422 (513)
Q Consensus 343 ~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~ 422 (513)
+++.++.||+|||++++.+...+.++.+.++.......... .+.....+.....+...+..+++++.|.+++|+||++.
T Consensus 304 ~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~ 382 (451)
T PF00083_consen 304 LLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSS-SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV 382 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccc-cccccccceeeeeccccccccccccccccccccccccc
Confidence 88889999999999988887666666555541111111111 01111122223333345666788899999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhheecccCCCCCHHHHHhH
Q 010317 423 RAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEEMQAL 490 (513)
Q Consensus 423 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~e~~~~ 490 (513)
|+++.|++..++++++.+.+..++.+.+..+....+.++++++++..+++++++|||++|++||+++.
T Consensus 383 R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 383 RSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred cccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 99999999999999888877777776665554567888888888888888999999999999999875
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=321.59 Aligned_cols=449 Identities=36% Similarity=0.678 Sum_probs=319.2
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCC--------chhHHHHHHHHHHHHHHHHhhcccccccc
Q 010317 23 KKGLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEIT--------EVQVEVLVGILNVFSLIGSLASGKTSDYI 94 (513)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s--------~~~~~~~~s~~~~g~~ig~~~~g~l~dr~ 94 (513)
.++..+..+..+.+..+..+..++|...++...+.+.++++.+ ..+.+++.+++.++..++++++|+++||+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~ 98 (481)
T TIGR00879 19 LGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF 98 (481)
T ss_pred CCcccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh
Confidence 3344455666666777788889999999999999888888877 78999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHH
Q 010317 95 GRRYTIVVAAATFLVGALAMGLAP---NYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILS 171 (513)
Q Consensus 95 GRr~~~~~~~~~~~i~~~~~~~~~---~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~ 171 (513)
|||+++.++.+++.++.+++++.. +++.+++.|++.|++.+...+....+++|++|+++|+++.+..+.+..+|..+
T Consensus 99 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 178 (481)
T TIGR00879 99 GRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILV 178 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999999886543 45589999999999999999989999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHH--HHHHH
Q 010317 172 GYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLD--DMIKA 249 (513)
Q Consensus 172 ~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~ 249 (513)
++.+...........+||+.|++.++..++..+..+++||+|+++..+++.+++.+..++..+.+.+..+..+ +..+.
T Consensus 179 ~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (481)
T TIGR00879 179 AYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDI 258 (481)
T ss_pred HHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 8887611111224569999999977777777677788999999988888877766665544322211111111 00000
Q ss_pred HhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHH
Q 010317 250 AKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFG 329 (513)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 329 (513)
....+.. . .+..+++......+ .+...+.......+.+....+...++.|.++++.+.+... ...
T Consensus 259 ~~~~~~~---~----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~ 323 (481)
T TIGR00879 259 KRSIEKR---S----------VQPSWGSLFSSTRR-IRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDH-AFL 323 (481)
T ss_pred HHHHHHh---h----------ccccHHHHHhcCch-hHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchH-HHH
Confidence 0000000 0 00113333332222 2333444444445555556666778889888877765532 333
Q ss_pred HHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccce
Q 010317 330 INVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPI 409 (513)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (513)
......++..++.++.+++.||+|||+.+..+...+..+.++++..................+.....+...+..+..+.
T Consensus 324 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (481)
T TIGR00879 324 VSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPV 403 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCe
Confidence 55566777888999999999999999998877665555555444322111111000001111222233334555566677
Q ss_pred eeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhheecccCCCCCHHH
Q 010317 410 TWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEE 486 (513)
Q Consensus 410 ~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~e 486 (513)
.+.+.+|.+|++.|+++.|+.+...++++.+.+...+.+.+..++...|++.+++++++++..+++.||+++++.+|
T Consensus 404 ~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 480 (481)
T TIGR00879 404 PWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480 (481)
T ss_pred ehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence 78888999999999999999999999988888888887777777778888888888888888778889999887654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=306.58 Aligned_cols=441 Identities=21% Similarity=0.299 Sum_probs=311.5
Q ss_pred CCcCCCchHHHHHHHHHHHHHHHHhhcccccchhhHHHHhhh--------CCCchhHHHHHHHHHHHHHHHHhhcccccc
Q 010317 21 RQKKGLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDL--------EITEVQVEVLVGILNVFSLIGSLASGKTSD 92 (513)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d 92 (513)
+.+.+..|+++..+.++.++.+.|+||...++...|.+...+ +.++.-.+.++.+-++|..+||+++|++.|
T Consensus 30 ~~~~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD 109 (538)
T KOG0252|consen 30 RTSEGLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGD 109 (538)
T ss_pred ccccchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567899999999999999999999999999888665433 245566788999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHH
Q 010317 93 YIGRRYTIVVAAATFLVGALAMGLAPN-------YPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFI 165 (513)
Q Consensus 93 r~GRr~~~~~~~~~~~i~~~~~~~~~~-------~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~ 165 (513)
|+|||+++...++++.++++++++... ...+++.|+++|+|.|+++|++.+.++|..-.++||...+..-...
T Consensus 110 ~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Q 189 (538)
T KOG0252|consen 110 KFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQ 189 (538)
T ss_pred hhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEec
Confidence 999999999999999999998887632 4578999999999999999999999999999999999888776666
Q ss_pred HHHHHHHHHHHHHhc----C-CCC-------CcchHHHHHhhhHHHHHHHHHHhccCCCchhHHh-cCCHHHHHHHHHHh
Q 010317 166 VLGILSGYVFNYALS----G-LPG-------NINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVM-KSRYDEAKRVLLKV 232 (513)
Q Consensus 166 ~~G~~~~~~~~~~~~----~-~~~-------~~~Wr~~~~~~~~~~~i~~~~~~~lpEsp~~l~~-~~~~~~a~~~~~~~ 232 (513)
..|.+.|.+.+..+. . ... ..-||..+.+.++|++......+.+|||++|-.. .++.++|.+-.++.
T Consensus 190 g~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~ 269 (538)
T KOG0252|consen 190 GFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKV 269 (538)
T ss_pred chhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccc
Confidence 667666665554432 1 111 1249999999999999998889999999998633 33444443211111
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccH
Q 010317 233 SDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYT 312 (513)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (513)
... .+++ + + ..++...++... ...+..++. .+.-..++..+..+|..-..++....+.
T Consensus 270 ~~~------~~~~---~-~-----~~~~~~~~~~~~---~~~F~~~f~----~~hg~~Llgt~~~WFllDiafy~~nL~~ 327 (538)
T KOG0252|consen 270 LSV------DIEA---E-S-----TAESDVPPPSNS---FGLFSRLFL----RWHGKHLLGTAGTWFLLDIAFYGQNLFQ 327 (538)
T ss_pred ccc------ccch---h-h-----ccccCCCCcccc---cchHHHHHH----HHHHHHHHHHHHHHHhhhhhhhccccHH
Confidence 100 0000 0 0 000001111111 111222221 1111233445566677777777777787
Q ss_pred HHHHHhCCCCCchh--------HHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCc
Q 010317 313 PAVFKGAGIHRKPV--------LFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTP 384 (513)
Q Consensus 313 p~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (513)
..+++..+...... ..+..++..+...++..++..++|++|||++.+.+.+++.+.++.++....- ..
T Consensus 328 s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~----~~ 403 (538)
T KOG0252|consen 328 SVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ----LE 403 (538)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc----cc
Confidence 78887554333221 1222333445555677788889999999999999887776666555532211 11
Q ss_pred hhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hcccchhHH
Q 010317 385 TVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISH-----RLSFGGTFF 459 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 459 (513)
.... .+++-.+...+.+.|++..+.++.+|.||+++|+++.|++...+.+++++....+.++.+ ..+.+.+++
T Consensus 404 ~~~G--f~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~ 481 (538)
T KOG0252|consen 404 NTIG--FVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFI 481 (538)
T ss_pred ccCc--eeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHH
Confidence 1111 112222333456778889999999999999999999999999999988888888888877 567778999
Q ss_pred HHHHHHHHHHHhhheecccCCCCCHHHHHhH
Q 010317 460 LLAGITTVGTIFFYVFLPETKGKTLEEMQAL 490 (513)
Q Consensus 460 ~~~~~~~~~~~~~~~~~pet~~~~~~e~~~~ 490 (513)
+++++++++.++ .+++|||++|++||++.+
T Consensus 482 i~~~~~~~gi~~-T~l~pEtk~~~leei~~e 511 (538)
T KOG0252|consen 482 ILAGCMLLGILF-TLLIPETKGKSLEEISNE 511 (538)
T ss_pred HHHHHHHHhHhe-eEEeecccccCHHHhcCh
Confidence 999998887666 466789999999998543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=306.24 Aligned_cols=400 Identities=19% Similarity=0.254 Sum_probs=258.1
Q ss_pred HHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchh-HHH-----HHHHHHHHHHHHHhhccccccccCchHHHHHHHHH
Q 010317 33 CALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQ-VEV-----LVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAAT 106 (513)
Q Consensus 33 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~-~~~-----~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~ 106 (513)
...++.++.++++||...++...|.+.++++.+.++ ..+ ..++.++++.+|++++|+++||+|||+++.+++++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l 96 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI 96 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 455667889999999999999999999999754432 122 24778899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcHHH--------HHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 010317 107 FLVGALAMGLAPNYPF--------LIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYA 178 (513)
Q Consensus 107 ~~i~~~~~~~~~~~~~--------l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~ 178 (513)
++++++++++++|+.+ ++++|+++|++.|+..+....+++|++|+++||++.++.+.+..+|..++..+...
T Consensus 97 ~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~ 176 (490)
T PRK10642 97 MSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVL 176 (490)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 89999999999999999999999999999999999998887777787777655433
Q ss_pred hcC-C----CCCcchHHHHHhhhHHHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Q 010317 179 LSG-L----PGNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKES 253 (513)
Q Consensus 179 ~~~-~----~~~~~Wr~~~~~~~~~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (513)
+.. . ...+|||+.|++.++++++..+....+||||+|...+++.++.. . +.
T Consensus 177 ~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~----------~--------------~~ 232 (490)
T PRK10642 177 ISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD----------R--------------EG 232 (490)
T ss_pred HHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc----------c--------------cc
Confidence 321 1 12579999999987766655555678999999853322111100 0 00
Q ss_pred CCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHh-CCCCCchhHHHHHH
Q 010317 254 SPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKG-AGIHRKPVLFGINV 332 (513)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~ 332 (513)
.. +. .+..++++++. .++.+..... ..+.....++.+..|.|.+++. .+.+... ......
T Consensus 233 -~~---~~---------~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~-~~~~~~ 293 (490)
T PRK10642 233 -LQ---DG---------PKVSFKEIATK----HWRSLLTCIG-LVIATNVTYYMLLTYMPSYLSHNLHYSEDH-GVLIII 293 (490)
T ss_pred -cc---cc---------ccCCHHHHHHH----hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHH
Confidence 00 00 00113333321 1122222221 2222334556677788988854 3433322 222334
Q ss_pred HHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeee
Q 010317 333 VMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWV 412 (513)
Q Consensus 333 ~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (513)
...++..++.++.+++.||+|||+.++.+.+.+......+.... . ...........+...+ ....+ .+....
T Consensus 294 ~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~g~---~~~~~-~g~~~~ 365 (490)
T PRK10642 294 AIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI---N-SNVIGLIFAGLLMLAV---ILNCF-TGVMAS 365 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH---h-CCCHHHHHHHHHHHHH---HHHHH-HHHHHH
Confidence 45566777888899999999999988766543222211111110 1 1111111111111111 11111 112345
Q ss_pred eecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHhhheecccCCCCCH
Q 010317 413 YSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLS-FGGTFFLLAGITTVGTIFFYVFLPETKGKTL 484 (513)
Q Consensus 413 ~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 484 (513)
+.+|++|++.|+++.|+.+.++++++++.+.....+.+..+ ....+++..+.++++.+. .+++|||+++..
T Consensus 366 ~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pes~~~~~ 437 (490)
T PRK10642 366 TLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT-GVTMKETANRPL 437 (490)
T ss_pred HHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH-HHHhccccCCCC
Confidence 67899999999999999888888877777777666655432 333444444555555444 345699876543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=312.04 Aligned_cols=390 Identities=22% Similarity=0.350 Sum_probs=271.8
Q ss_pred hhhHHHHhhhCCC---chhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 010317 53 GAVLYIKEDLEIT---EVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMI 129 (513)
Q Consensus 53 ~~~~~~~~~~~~s---~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l 129 (513)
+..|.+.+|+|++ +.+.++..+++.+|..+|++++|+++||+|||+++.++.++..++.+++++++|++.++++|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4567899999999 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHhcc
Q 010317 130 AGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIM 209 (513)
Q Consensus 130 ~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~~l 209 (513)
.|++.+...+....++.|++|+++|++..++.+.++.+|.++++++++.+. +||+.+++.+++.++..+..+++
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~wr~~~~~~~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWRWLQLAVSLPTFLFFLLSWFV 263 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998889999888888776553 49999999999988877777889
Q ss_pred CCCchhHHhcCCHHHHHHHHHHhcCChHH--HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHH
Q 010317 210 PESPRWLVMKSRYDEAKRVLLKVSDTEQE--AKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVR 287 (513)
Q Consensus 210 pEsp~~l~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (513)
||||+|+..++|.+|+.+.+++..+.+.. ..+..+...++ +. . + . ..+..++++++ .+.++
T Consensus 264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-~~---~--~--~-------~~~~~~~~l~~--~~~~~ 326 (505)
T TIGR00898 264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEK-DL---S--S--S-------KKQYSFLDLFR--TPNLR 326 (505)
T ss_pred CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhh-hh---h--h--c-------cCCCcHHHHhC--ChHHH
Confidence 99999999999999998887765422110 00000000000 00 0 0 0 00112444444 23444
Q ss_pred HHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHH
Q 010317 288 RMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVG 367 (513)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~ 367 (513)
..++..... ++.....++....+.+. .+. + ......+.++...++.++.+++.||+|||+.+..+.+.+.+
T Consensus 327 ~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~--~--~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~ 397 (505)
T TIGR00898 327 KTTLCLMML-WFTTAFSYYGLVLDLGN----LGG--N--IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGV 397 (505)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhccccc----cCC--C--hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444333222 22222222222222221 121 1 12234456677788899999999999999998877655544
Q ss_pred HHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 010317 368 SLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLS 447 (513)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~ 447 (513)
+.+++... ............++. .++..+..+..+.+.+|++|++.|+++.|+.+.++++++.+.+.+..
T Consensus 398 ~~l~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~- 467 (505)
T TIGR00898 398 ALLLLLFV----PVDLYFLRTALAVLG-----KFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY- 467 (505)
T ss_pred HHHHHHHc----CCCchHHHHHHHHHH-----HHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-
Confidence 44433321 111111111111111 11111122355778999999999999999999999997777766655
Q ss_pred HHHhcccchhHHHHHHHHHHHHHhhheecccCCCCCHHH
Q 010317 448 ISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEE 486 (513)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~e 486 (513)
. ...+...++++++++.+++.+.. +++|||++++++|
T Consensus 468 ~-~~~~~~~~~~~~~~~~~~~~~~~-~~lpet~~~~l~~ 504 (505)
T TIGR00898 468 L-GEKWLFLPLVLFGGLALLAGILT-LFLPETKGVPLPE 504 (505)
T ss_pred H-HHHHHhhHHHHHHHHHHHHHHHH-HcCcCCCCCCCCC
Confidence 3 33344567777777777776654 5679999988754
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=293.09 Aligned_cols=389 Identities=24% Similarity=0.283 Sum_probs=268.6
Q ss_pred HhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhccccc
Q 010317 59 KEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSL 138 (513)
Q Consensus 59 ~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~ 138 (513)
.+.++.+.....+..+++++|..+|++++|+++||+|||+++++++++..++.+++++++|++.+++.|++.|++.++..
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence 45667788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHhccCCCchhHHh
Q 010317 139 MISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVM 218 (513)
Q Consensus 139 ~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~~lpEsp~~l~~ 218 (513)
.+...+++|+.++++|+.+..+...++..|.+..+..++... +|||.+++..++.++.++.+++.||||||+..
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~------~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~ 263 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITR------DWRWLFWIISIPSGLFLLLWFLPPESPRWLLS 263 (521)
T ss_pred HHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHccCcChHHHHH
Confidence 999999999999999999999966667777776666666654 89999999999998887777777899999999
Q ss_pred cCCHHHHHHHHHHhcCCh---HHHHHHHHHH--HHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHH
Q 010317 219 KSRYDEAKRVLLKVSDTE---QEAKERLDDM--IKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAA 293 (513)
Q Consensus 219 ~~~~~~a~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (513)
++|.|++.+.+++..+.+ .+.++..+.. .+..+... ..+...+.++++ .+.+++.++..
T Consensus 264 ~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~~--~~~l~~~~~~~ 327 (521)
T KOG0255|consen 264 KGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLF--------------TEPKISFLDLFR--TPRLRYRTLYL 327 (521)
T ss_pred cCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhc--------------cCCCCchhhhhc--CHHHHHHHHHH
Confidence 999999999998875322 1111111111 01000000 001112344443 33355655554
Q ss_pred HHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHH
Q 010317 294 VGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLG 373 (513)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~ 373 (513)
...++ .....+++..+. ..+.+. .........+....+.....+...|++|||..+..+.....++.+..+
T Consensus 328 ~~~~~-~~~~~y~gl~~~------~~~lg~--~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~ 398 (521)
T KOG0255|consen 328 LFIWF-VFSLVYYGLSLN------VSGLGG--NIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFG 398 (521)
T ss_pred HHHHH-HHhHHHHhhhhh------hhhcCc--hHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 43332 111122222111 111222 223344455557778888888999999999999887766555555555
Q ss_pred HHhhccCCCCc-hhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010317 374 IGSKILEGSTP-TVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRL 452 (513)
Q Consensus 374 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 452 (513)
+.... .. ........+........+ . +.+.+.+|++|+.+|+.+.+.++.++++++...+........ .
T Consensus 399 ~~~~~----~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~ 468 (521)
T KOG0255|consen 399 WLPDD----LGGWLHWILPLLGKFFIGSAF----N-LIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-M 468 (521)
T ss_pred Hhhcc----chhHHHHHHHHHHHHHHHHHH----H-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h
Confidence 43321 11 111222222222222222 1 347899999999999999999999999976666555433333 3
Q ss_pred ccchhHHHHHHHHHHHHHhhheecccCCCCCHHHHH
Q 010317 453 SFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEEMQ 488 (513)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~e~~ 488 (513)
.....+.+++....+.++....++|||+++.+.+..
T Consensus 469 ~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~ 504 (521)
T KOG0255|consen 469 FPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTL 504 (521)
T ss_pred cccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhH
Confidence 333444445666666666666889999999886543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=282.00 Aligned_cols=387 Identities=21% Similarity=0.240 Sum_probs=243.8
Q ss_pred HHHHHHHHHHHHHhhcccccchhhHHHHhhhC---CCchhHHHHHHHH---HHHHHHHHhhccccccccCchHHHHHHHH
Q 010317 32 ICALLASINSILLGYDIGVMSGAVLYIKEDLE---ITEVQVEVLVGIL---NVFSLIGSLASGKTSDYIGRRYTIVVAAA 105 (513)
Q Consensus 32 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~s~~~~~~~~s~~---~~g~~ig~~~~g~l~dr~GRr~~~~~~~~ 105 (513)
.....+.++.++++||...++...|.+.++++ .++.+.+...+++ +++..+|++++|+++||+|||+++.++++
T Consensus 22 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~ 101 (432)
T PRK10406 22 WAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVC 101 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34556677888999999999999999999985 5555554444444 45555999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcHH--------HHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHH
Q 010317 106 TFLVGALAMGLAPNYP--------FLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNY 177 (513)
Q Consensus 106 ~~~i~~~~~~~~~~~~--------~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~ 177 (513)
+++++++++++++++. .++++|+++|++.|+.++....+++|++|+++|+++.+..+.....|.+++.++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~ 181 (432)
T PRK10406 102 MMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVV 181 (432)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 58999999999999999999999999999999999998888777778777765544
Q ss_pred HhcCCC-----CCcchHHHHHhhhHHHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh
Q 010317 178 ALSGLP-----GNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKE 252 (513)
Q Consensus 178 ~~~~~~-----~~~~Wr~~~~~~~~~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (513)
.+.... ..+|||+.|++.++++++.......+||+|++... . . ++
T Consensus 182 ~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~-------~----------~-------------~~ 231 (432)
T PRK10406 182 VLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR-------A----------L-------------KE 231 (432)
T ss_pred HHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh-------h----------h-------------cc
Confidence 433211 24699999999888887766666678888753100 0 0 00
Q ss_pred cCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHh-CCCCCchhHHHHH
Q 010317 253 SSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKG-AGIHRKPVLFGIN 331 (513)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~ 331 (513)
...++++++ .++...... ...+......+.+..|.|.++.+ .+.+.... ....
T Consensus 232 -------------------~~~~~~l~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~-~~~~ 285 (432)
T PRK10406 232 -------------------AGSLKGLWR-----NRRAFIMVL-GFTAAGSLCFYTFTTYMQKYLVNTAGMHANVA-SGIM 285 (432)
T ss_pred -------------------cccHHHHHh-----hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHH
Confidence 001222222 111111111 11122223345566788988854 34333222 2233
Q ss_pred HHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceee
Q 010317 332 VVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITW 411 (513)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (513)
........++..+.+++.||++||+.+..+..........+.... ........ ...+.....+...+. .+..+
T Consensus 286 ~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~ 358 (432)
T PRK10406 286 TAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSAL---QNVSSPYA-AFGLVMCALLIVSFY---TSISG 358 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH---HcCCcHHH-HHHHHHHHHHHHHHH---HHHHH
Confidence 344455567777889999999999887655433222211111101 11111111 111111111111111 12345
Q ss_pred eeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHhhheecccCCCCC
Q 010317 412 VYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLS-FGGTFFLLAGITTVGTIFFYVFLPETKGKT 483 (513)
Q Consensus 412 ~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 483 (513)
.+.+|.||++.|+++.|+++.++++..+..+.......+..+ +...++..++..+++.+..++ .++++|+
T Consensus 359 ~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~--l~~~~~~ 429 (432)
T PRK10406 359 ILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM--LHRKGKG 429 (432)
T ss_pred HHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH--hhhcccc
Confidence 678999999999999999999988753333333322333333 333455555555555554433 4555554
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=279.52 Aligned_cols=395 Identities=16% Similarity=0.184 Sum_probs=263.7
Q ss_pred HHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHH
Q 010317 30 AFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLV 109 (513)
Q Consensus 30 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i 109 (513)
++....+.++.+..+++|+.+++...|.+++|+|+++++.+++.+++++++++++++.|+++||+|||+++..+++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 85 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI 85 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence 45566777778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcC---CCCCc
Q 010317 110 GALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSG---LPGNI 186 (513)
Q Consensus 110 ~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~---~~~~~ 186 (513)
++.++++++|++.+++.|++.|++.|...+....++.|++|+++|++++++++....+|..+++.++..+.. ..+..
T Consensus 86 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 165 (412)
T TIGR02332 86 ASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALK 165 (412)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 999999999999999999999999999988888889999999999999999999999998888877654432 12346
Q ss_pred chHHHHHhhhHHHHHHHH-HHhccCCCch---hHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 010317 187 NWRIMLGLAAVPAAVIGV-GVLIMPESPR---WLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQ 262 (513)
Q Consensus 187 ~Wr~~~~~~~~~~~i~~~-~~~~lpEsp~---~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (513)
+||+.|++.+++.++..+ ..+++||+|+ |+.. ++++..+ +..+ .. ..+.+++++..
T Consensus 166 gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~-----~~~~~~~----------~~~~----~~-~~~~~~~~~~~ 225 (412)
T TIGR02332 166 GWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDE-----EDKKALK----------EMID----ND-QLTLEQPEGAF 225 (412)
T ss_pred chhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCH-----HHHHHHH----------HHHH----hc-ccccccccccc
Confidence 999999998888765544 4567899984 3211 1110000 0000 00 00000000000
Q ss_pred CCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCc-hhHHHHHHHHhHHHHHH
Q 010317 263 GPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRK-PVLFGINVVMGLAKTFF 341 (513)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 341 (513)
.+........+++++ ++.++.....+++.....+.+..|.|.++++.+.+.+ ...........++..++
T Consensus 226 --~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g 295 (412)
T TIGR02332 226 --AHAAMPQRSMLREIF--------TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFG 295 (412)
T ss_pred --ccccccHHHHHHHhc--------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHH
Confidence 000001111233222 1112223344444555567778899999986432222 22233456677788899
Q ss_pred HHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChh
Q 010317 342 VVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLR 421 (513)
Q Consensus 342 ~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~ 421 (513)
.++.+++.||++||+.............+.+.. .... ....... +....+ .. ....+..+....|.+|++
T Consensus 296 ~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~-~~~~~~-g~--~~~~~~~~~~~~~~~~~~ 365 (412)
T TIGR02332 296 MIWWSRHSDRLKERKHHTALPYLFAAAGWLLAS-----ATDH-NLIQLLG-IIMASM-GS--FSAMAIFWTTPDQSISLQ 365 (412)
T ss_pred HHHHHHHhcccCccHHHHHHHHHHHHHHHHHHH-----hcCC-HHHHHHH-HHHHHH-Hh--hhhhhHHHhhcccccchH
Confidence 999999999999877533221111111111111 1111 1111111 111111 11 111234456668899999
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccchhHHHHHHH
Q 010317 422 LRAQGSALAISVNRLVSGVISMTFLSISHRL-SFGGTFFLLAGI 464 (513)
Q Consensus 422 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 464 (513)
.|+++.|+.+.++++++.+.+.....+.+.. ++...+++++++
T Consensus 366 ~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 366 ARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 9999999999999998878777776766655 366666655543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=273.86 Aligned_cols=391 Identities=16% Similarity=0.198 Sum_probs=248.0
Q ss_pred HHHHHHHHHHHHHHhhcccccchhhHH-HHhhh--CCCchhHHHHH-----HHHHHHHHHHHhhccccccccCchHHHHH
Q 010317 31 FICALLASINSILLGYDIGVMSGAVLY-IKEDL--EITEVQVEVLV-----GILNVFSLIGSLASGKTSDYIGRRYTIVV 102 (513)
Q Consensus 31 ~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~--~~s~~~~~~~~-----s~~~~g~~ig~~~~g~l~dr~GRr~~~~~ 102 (513)
+.......++.++|+||...++...|. +.+++ ++++. .++.. ++.+++..+|+++.|+++||+|||+++..
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~ 99 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLML 99 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHH
Confidence 345667777899999999999987764 55555 66665 45543 34567778999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcHH--------HHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHH
Q 010317 103 AAATFLVGALAMGLAPNYP--------FLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYV 174 (513)
Q Consensus 103 ~~~~~~i~~~~~~~~~~~~--------~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~ 174 (513)
++++++++++++++++++. .++++|+++|++.|+.++....++.|++|+++|++..+..+.++.+|.+++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~ 179 (438)
T PRK09952 100 TVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTG 179 (438)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 58899999999999999999999999999999999999888888888877755
Q ss_pred HHHHhcCC-C----CCcchHHHHHhhhHHHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010317 175 FNYALSGL-P----GNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKA 249 (513)
Q Consensus 175 ~~~~~~~~-~----~~~~Wr~~~~~~~~~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 249 (513)
+...+... . ..++||+.|++.+++.++.......+||||+|...+++.++++
T Consensus 180 ~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~----------------------- 236 (438)
T PRK09952 180 LVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAK----------------------- 236 (438)
T ss_pred HHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccccc-----------------------
Confidence 44333211 1 2469999999988877665555567899987642221100000
Q ss_pred HhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHh-CCCCCchhHH
Q 010317 250 AKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKG-AGIHRKPVLF 328 (513)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~ 328 (513)
+ . . ...+.+.+. ++...... ...+.+..+.+....|.|.+++. .+.+.. ...
T Consensus 237 ----------~-~------~---~~~~~l~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~-~~~ 289 (438)
T PRK09952 237 ----------K-R------I---PVIEALLRH-----PGAFLKII-ALRLCELLTMYIVTAFALNYSTQNLGLPRE-LFL 289 (438)
T ss_pred ----------c-c------C---CHHHHHHHc-----hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHH
Confidence 0 0 0 001111111 11111111 11122233345555677777653 333322 122
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccc
Q 010317 329 GINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGP 408 (513)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (513)
....+.+....++.++.+++.||+|||+.+..+.+....+.+.+.... .. .+...... ...... .+......+
T Consensus 290 ~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~--~~~~l~-~~~~~~~~~ 362 (438)
T PRK09952 290 NIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMAL---EA-QSIFWIVF--FSIMLA-NIAHDMVVC 362 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH---Hc-CChHHHHH--HHHHHH-HHHHHHHHH
Confidence 233445566677788899999999999987766443332222121111 11 11111111 111111 111111123
Q ss_pred eeeeeecccCChhhHhhHHHHHHHHHH-HHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHhhheecccCC
Q 010317 409 ITWVYSSEIFPLRLRAQGSALAISVNR-LVSGVISMTFLSISHRL--SFGGTFFLLAGITTVGTIFFYVFLPETK 480 (513)
Q Consensus 409 ~~~~~~~el~P~~~R~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pet~ 480 (513)
..+.+.+|++|++.|+++.|+.+.+++ +++++.+.....+.+.. ++...+...+++.+++++.. +..+||+
T Consensus 363 ~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~~ 436 (438)
T PRK09952 363 VQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKDNQ 436 (438)
T ss_pred HHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHccccc
Confidence 456788999999999999999888877 55566666666665532 34455666666666665554 4456643
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-31 Score=265.40 Aligned_cols=390 Identities=17% Similarity=0.185 Sum_probs=258.6
Q ss_pred CchHHHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHH
Q 010317 26 LNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAA 105 (513)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~ 105 (513)
.++++|.......+..+.+++|...+++..|.+++++|+++++.+++.+++.++..+++++.|+++||+|||+++..+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 85 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV 85 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45566777778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCC
Q 010317 106 TFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGN 185 (513)
Q Consensus 106 ~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 185 (513)
+++++.+.++++++++.+++.|++.|++.+...+....++.|++|+++|+++.+..+....+|..+++.+...+.... .
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~-~ 164 (405)
T TIGR00891 86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW-G 164 (405)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C
Confidence 999999999999999999999999999999999988999999999999999999999988999888877765543211 1
Q ss_pred cchHHHHHhhhHHHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 010317 186 INWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPP 265 (513)
Q Consensus 186 ~~Wr~~~~~~~~~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (513)
.+||+.|++.+++.++..+....+||++++...+++.++..+..++..+.++..+.. .
T Consensus 165 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~ 222 (405)
T TIGR00891 165 DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANI----------------------V 222 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhh----------------------h
Confidence 259999998777776666666778998865432221111111000000000000000 0
Q ss_pred CCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHh-CCCCCchhHHHHHHHHhHHHHHHHHH
Q 010317 266 KGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKG-AGIHRKPVLFGINVVMGLAKTFFVVL 344 (513)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (513)
+ ......++.. +.......... ...............+.|.++.+ .+.+.. ....+.....++..++.++
T Consensus 223 ~---~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~-~~~~~~~~~~~~~~~g~~~ 293 (405)
T TIGR00891 223 M---TLAAAMVQSA----GKRWPTFVYLV-VLVLFANLYSHPIQDLLPTYLKADLGLSPH-TVANIVVFSNIGAIVGGCV 293 (405)
T ss_pred h---hhhHHhhhhh----hhhhHHHHHHH-HHHHHHHHHHhhhhhhhHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHH
Confidence 0 0000000000 00001111111 11111111122344566776653 333322 2222445567788899999
Q ss_pred HHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHh
Q 010317 345 SALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRA 424 (513)
Q Consensus 345 ~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~ 424 (513)
.+++.||+|||+.+..+...+....+. .. . . ..+.+.... .......+..+..+..+.+.+|.+|++.|+
T Consensus 294 ~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~-~---~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (405)
T TIGR00891 294 FGFLGDWLGRRKAYVCSLLAGQLLIIP-VF-A---I-GANVAVLGL----GLFFQQMLVQGIWGILPKHLGEYFPTDQRA 363 (405)
T ss_pred HHHHHHHhCchhhhHHHHHHHHHHHHH-HH-H---h-CCchHHHHH----HHHHHHHHHccchhhHHHHHhhhCCcchhH
Confidence 999999999999887665433111111 11 1 0 111111111 111112222233344566789999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchh
Q 010317 425 QGSALAISVNRLVSGVISMTFLSISHRLS-FGGT 457 (513)
Q Consensus 425 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 457 (513)
++.|+.+.++++++.+.+.....+.+..+ +..+
T Consensus 364 ~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~ 397 (405)
T TIGR00891 364 AGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTA 397 (405)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 99999999999988888888888877665 4433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=277.20 Aligned_cols=407 Identities=12% Similarity=0.040 Sum_probs=261.1
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHH
Q 010317 23 KKGLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVV 102 (513)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~ 102 (513)
++.+.+..+....+.++.+++...|+..++++.|.+++|+|+++++.+++.+++.+++.+++++.|+++||+|||+++..
T Consensus 20 ~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~ 99 (467)
T PRK09556 20 RKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPF 99 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHH
Confidence 44556666777778888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-----cCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHH
Q 010317 103 AAATFLVGALAMGL-----APNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNY 177 (513)
Q Consensus 103 ~~~~~~i~~~~~~~-----~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~ 177 (513)
+++++++.....++ +++++.+++.|++.|++.+...+....+++|++|+++||+++++.+....+|.+++..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~ 179 (467)
T PRK09556 100 LLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVAL 179 (467)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHH
Confidence 99888887776655 6899999999999999999988888899999999999999999998888888888766643
Q ss_pred HhcCCCCCcchHHHHHhhhHHHHHHHHH-HhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCC
Q 010317 178 ALSGLPGNINWRIMLGLAAVPAAVIGVG-VLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPS 256 (513)
Q Consensus 178 ~~~~~~~~~~Wr~~~~~~~~~~~i~~~~-~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (513)
.+.......+||..|.+.++..++..+. +++.+++|.....+ +.++ . .. .+.+ .+ ++ . .
T Consensus 180 ~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~~~~---~---~~-~~~~-~~------~~--~---~ 239 (467)
T PRK09556 180 WGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-KAEE---I---FG-EPIS-EE------DK--E---T 239 (467)
T ss_pred HHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-Chhh---c---cc-Cccc-hh------hh--c---c
Confidence 3221101126999888877766554443 44456665321000 0000 0 00 0000 00 00 0 0
Q ss_pred CCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHh-CCCCCchhHHHHHHHHh
Q 010317 257 GPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKG-AGIHRKPVLFGINVVMG 335 (513)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~ 335 (513)
+. .+......+++ ..++++.++...+..++.....++...|.|.++++ .+.+.... ........
T Consensus 240 --~~------~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a-~~~~~~~~ 304 (467)
T PRK09556 240 --ES------TDMTKWQIFVE------YVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDA-INTFTLFE 304 (467)
T ss_pred --cc------ccCcHHHHHHH------HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH-HHHHHHHH
Confidence 00 00000000111 01122223333333333334445677899988865 34443332 22344566
Q ss_pred HHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeec
Q 010317 336 LAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSS 415 (513)
Q Consensus 336 ~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (513)
++..++.++.|++.||+|||+.++...........++.. . . ..+........... +++..+.....+.+..
T Consensus 305 ~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~-~---~-~~~~~~~~~~~~~~----G~~~~~~~~~~~~~~~ 375 (467)
T PRK09556 305 IGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVY-Q---H-ATSEYMYLASLFAL----GFLVFGPQLLIGVAAV 375 (467)
T ss_pred HHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH-H---h-cCcHHHHHHHHHHH----HHHHhhHHHHHHHHHH
Confidence 778899999999999999998765433222211111111 1 1 11111111111111 1111122112234566
Q ss_pred ccCChhhHhhHHHHHHHHHHHHH-HHHHHHHHHHHH------------hcccchhHHHHHHHHHHHHHhhh
Q 010317 416 EIFPLRLRAQGSALAISVNRLVS-GVISMTFLSISH------------RLSFGGTFFLLAGITTVGTIFFY 473 (513)
Q Consensus 416 el~P~~~R~~~~g~~~~~~~~~~-~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 473 (513)
|.+|++.|+++.|+.+.++++++ .+.+.....+.+ ..++...|++..+..+++.+...
T Consensus 376 ~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 376 GFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred hhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999744 666667777766 34567778777777766655543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-31 Score=259.91 Aligned_cols=353 Identities=16% Similarity=0.149 Sum_probs=228.4
Q ss_pred ccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 010317 50 VMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMI 129 (513)
Q Consensus 50 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l 129 (513)
.+++..|.+++|+|+|+++.+++.+++.+++.+++++.|+++||+|||+++..+......+.......+++..++++|++
T Consensus 9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l 88 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLL 88 (368)
T ss_pred HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 35677899999999999999999999999999999999999999999998776655554443333334799999999999
Q ss_pred hhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHH-HHHhc
Q 010317 130 AGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIG-VGVLI 208 (513)
Q Consensus 130 ~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~-~~~~~ 208 (513)
.|++.+. .......++|++|+++|++++++.+....+|.++++.++..+. ...+||+.|++.++++++.. +.+++
T Consensus 89 ~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~---~~~gWr~~f~~~~~l~~~~~~~~~~~ 164 (368)
T TIGR00903 89 AALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY---TAGGLQLLIIPIAAVAAAGIILVLAA 164 (368)
T ss_pred HHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999986 4445556799999999999999999999999999888776654 25699999999777665544 45677
Q ss_pred cCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHH
Q 010317 209 MPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRR 288 (513)
Q Consensus 209 lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (513)
+||+|++.. +.. +.+ +..+ .+++++++
T Consensus 165 lp~~p~~~~---~~~------------~~~--~~~~-----------------------------~~~~ll~~------- 191 (368)
T TIGR00903 165 LPALPFQAA---EGF------------GFK--DAVK-----------------------------EFGALAGR------- 191 (368)
T ss_pred cCCCCCCCC---CCc------------chH--HHHH-----------------------------HHHHHHcC-------
Confidence 899997521 100 000 0000 01222221
Q ss_pred HHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCCh---hHHHh-hhHH
Q 010317 289 MLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRR---PLLLL-GSSG 364 (513)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr---~~~~~-~~~~ 364 (513)
+..+.....+++.....+.+..|+|+++++.+.+.. ......+....+.++ .+++.||..|| +.... ....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~--~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~ 266 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI--AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALL 266 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH--HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHH
Confidence 112223333444555567778899999987654322 222233333334443 46677776543 33222 1111
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHH
Q 010317 365 MVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMT 444 (513)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~ 444 (513)
.......++ ... .. ... .. .. ....++..+..+..+.+.+|++|++.|+++.|+.+..+|+++...+..
T Consensus 267 ~a~~~~~~~-----~~~-~~-~~~-~~--~~-~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~ 335 (368)
T TIGR00903 267 IAAFFLALA-----FEL-NR-LAL-FA--FI-GIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALA 335 (368)
T ss_pred HHHHHHHHH-----Hcc-cc-HHH-HH--HH-HHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHH
Confidence 111111111 011 11 111 11 11 111222333334456789999999999999999999999988777776
Q ss_pred HHHHHHhcccchhHHHHHHHHHHHHHhhheeccc
Q 010317 445 FLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPE 478 (513)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 478 (513)
.+.... +....|.++++..+++++.+. ..++
T Consensus 336 ~~~~~~--~~~~~f~~~~~~~~i~~~~~~-~~~~ 366 (368)
T TIGR00903 336 AMLFIS--SAEAYFTFLAILITIAFAIAL-LLPN 366 (368)
T ss_pred HHHHhc--CHHHHHHHHHHHHHHHHHHHH-hCCC
Confidence 655552 455678888888888777653 3344
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-30 Score=260.89 Aligned_cols=375 Identities=17% Similarity=0.196 Sum_probs=250.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHH
Q 010317 28 KYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATF 107 (513)
Q Consensus 28 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~ 107 (513)
++++.....+.+.++.+++|....++..|.+++++|+++.+.++..+++.+++.+++++.|+++||+|||+++.++.+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~ 93 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 34455566777888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcc
Q 010317 108 LVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNIN 187 (513)
Q Consensus 108 ~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 187 (513)
+++..+++++++++.++++|++.|++.|...+....++.|++|+++|+++.++......+|.++++.+...+. ...+
T Consensus 94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~---~~~~ 170 (426)
T PRK12307 94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA---EAYG 170 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc---ccCC
Confidence 9999999999999999999999999999998888899999999999999999988888888888765543332 3468
Q ss_pred hHHHHHhhhHHHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Q 010317 188 WRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKG 267 (513)
Q Consensus 188 Wr~~~~~~~~~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (513)
||+.|++..++.++........||+++|...+.+. .+ + +.+ ..+
T Consensus 171 w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~---------------~--~~~-~~~------ 214 (426)
T PRK12307 171 WRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG------------KG---------------K--HSQ-SAW------ 214 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc------------cc---------------c--ccc-cch------
Confidence 99999886655444433334457766442110000 00 0 000 000
Q ss_pred CccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHH
Q 010317 268 NFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSAL 347 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (513)
+ .....++++++. +..+.. .... ...+......+.+..+.|.++++.+.+.... ........++..++.++.++
T Consensus 215 ~-~~~~~~~~~~~~--~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~g~~~~g~ 288 (426)
T PRK12307 215 S-VFSLSMKGLFNR--AQFPLT-LCVF-IVLFSIFGANWPIFGLLPTYLAGEGFDTGVV-SNLMTAAAFGTVLGNIVWGL 288 (426)
T ss_pred h-hhhHHHHHHHhh--chHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 0 000112333321 111111 1111 1112222223334557788887665433222 22334566778888999999
Q ss_pred HhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHH
Q 010317 348 HLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGS 427 (513)
Q Consensus 348 ~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~ 427 (513)
+.||++||+.+..+.+......+.+... . ........... +...+...+..+..+.++.|.+|++.|+++.
T Consensus 289 l~dr~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~ 359 (426)
T PRK12307 289 CADRIGLKKTFSIGLLMSFLFIFPLFRI----P-QDNYLLLGACL----FGLMATNVGVGGLVPKFLYDYFPLEVRGLGT 359 (426)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHH----c-cccHHHHHHHH----HHHHHhcccHhHHHHHHHHHhCcHHHHhhhh
Confidence 9999999998876654433322222111 1 11111111111 1111122222334456778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 010317 428 ALAISVNRLVSGVISMTFLSISHRLSFGG 456 (513)
Q Consensus 428 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (513)
|+...++++++.+.+.....+.+..+...
T Consensus 360 g~~~~~~~~~~~~gp~~~g~l~~~~g~~~ 388 (426)
T PRK12307 360 GLIYNLAATSGTFNSMAATWLGITMGLGA 388 (426)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence 99999999987777777767766665443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-31 Score=266.66 Aligned_cols=407 Identities=13% Similarity=0.145 Sum_probs=263.7
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHH
Q 010317 28 KYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATF 107 (513)
Q Consensus 28 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~ 107 (513)
++++.......+.++...++...++...|.+.+++|++.++.+++.+++.+++.+++++.|+++||+|||+++.++.+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~ 98 (434)
T PRK11663 19 YWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT 98 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence 33444555566777777888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcc
Q 010317 108 LVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNIN 187 (513)
Q Consensus 108 ~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 187 (513)
+++..+.+++++++.+++.|++.|++.|...+....++.|++|+++|++++++.+....+|..+++.+...+. ...+
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~---~~~g 175 (434)
T PRK11663 99 GIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA---LHYG 175 (434)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hccc
Confidence 9999999999999999999999999999888888889999999999999999999888888888876544443 2468
Q ss_pred hHHHHHhhhHHHHHHH-HHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 010317 188 WRIMLGLAAVPAAVIG-VGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPK 266 (513)
Q Consensus 188 Wr~~~~~~~~~~~i~~-~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (513)
||+.|++.++..++.. +..+++||+|++.......++ +++ .++ ...+ . +...
T Consensus 176 w~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~-----------~~~-~~~------~~~~----~----~~~~- 228 (434)
T PRK11663 176 WRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEW-----------RHD-ALE------LAQQ----Q----EGAG- 228 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccc-----------ccc-ccc------cchh----c----cccC-
Confidence 9999998887665443 345567888764211100000 000 000 0000 0 0000
Q ss_pred CCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHh-CCCCCchhHHHHHHHHhHHHHHHHHHH
Q 010317 267 GNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKG-AGIHRKPVLFGINVVMGLAKTFFVVLS 345 (513)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (513)
. .+++.+. ....+++.++......+......+.+..|.|.++.+ .+.+.... ........++..++.++.
T Consensus 229 --~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a-~~~~~~~~~~~~~g~~~~ 299 (434)
T PRK11663 229 --L----SRKEILT--KYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTA-NSAVSMFELGGFIGALVA 299 (434)
T ss_pred --C----ChhhhHH--HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHH
Confidence 0 0111110 001111222222222222333344566788888854 34443332 223445667788999999
Q ss_pred HHHhhcc--CChhHH-HhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhh
Q 010317 346 ALHLDKF--GRRPLL-LLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRL 422 (513)
Q Consensus 346 ~~~~d~~--grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~ 422 (513)
+++.||+ ++|+.. .............+.. .. .............. +++..++......+..|.+|++.
T Consensus 300 g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~ 370 (434)
T PRK11663 300 GWGSDKLFNGNRGPMNLIFAAGILLSVGSLWL----MP-FASYVMQAACFFTI----GFFVFGPQMLIGMAAAECSHKEA 370 (434)
T ss_pred hhhHHHhccCCccHHHHHHHHHHHHHHHHHHH----cc-cccHHHHHHHHHHH----HHHHhhHHHHHHHHHHhcccHhh
Confidence 9999998 333332 2211111111111111 11 11111111111111 12222221122345689999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhheecccCCCC
Q 010317 423 RAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGK 482 (513)
Q Consensus 423 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 482 (513)
|+++.|+.++++++++.+.+..+..+.+..++...|.+.+++.+++++..+...++++++
T Consensus 371 ~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 371 AGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 999999999999998888888888888888888888888888777766554444444333
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-30 Score=261.35 Aligned_cols=378 Identities=19% Similarity=0.243 Sum_probs=260.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHH
Q 010317 29 YAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFL 108 (513)
Q Consensus 29 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~ 108 (513)
++|....++++..+.+++|....+...|.+.+|+|.++++.+++.+++.++..+++++.|+++||+|||+++..+.++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFG 91 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 67778888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcch
Q 010317 109 VGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINW 188 (513)
Q Consensus 109 i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~W 188 (513)
++.++++++++++.+++.|++.|++.+...+....++.|++|+++|++.+++.+....+|..+++.++..+. ...+|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~ 168 (406)
T PRK11551 92 LFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA---GDAAW 168 (406)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cccCH
Confidence 999999999999999999999999999988888899999999999999999998888888888877664443 35689
Q ss_pred HHHHHhhhHHHHHHH-HHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Q 010317 189 RIMLGLAAVPAAVIG-VGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKG 267 (513)
Q Consensus 189 r~~~~~~~~~~~i~~-~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (513)
|+.|++.++..++.. +..+++||+|++...+++.++ ++..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---------------~~~~------------------------ 209 (406)
T PRK11551 169 RHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQ---------------RAPV------------------------ 209 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchh---------------hhhh------------------------
Confidence 999988776544433 345668998865322111000 0000
Q ss_pred CccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHH
Q 010317 268 NFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSAL 347 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (513)
++...+. +..++... ....++......+....|.|.++++.+.+..... ......+++..++.++.++
T Consensus 210 -------~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~ 277 (406)
T PRK11551 210 -------LRALFGE--GRATATLL--LWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAG-LVQIAFNIGGALGSLLIGA 277 (406)
T ss_pred -------HHHHhhh--hhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhh-HHHHHHHHHHHHHHHHHHH
Confidence 0000000 00000000 1111122222334455678888877665443332 2444566778889999999
Q ss_pred HhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHH
Q 010317 348 HLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGS 427 (513)
Q Consensus 348 ~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~ 427 (513)
+.||+|||+.+..+......+.+.+.. . ...+.... ......++..+..+..+.+.+|.+|++.|+++.
T Consensus 278 l~dr~g~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~ 346 (406)
T PRK11551 278 LMDRLRPRRVVLLIYAGILASLAALAA-----A--PSFAGMLL----AGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGV 346 (406)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHh-----c--CcHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhh
Confidence 999999999887654333333222211 1 11111111 111112222223344566789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHh
Q 010317 428 ALAISVNRLVSGVISMTFLSISHRLS-FGGTFFLLAGITTVGTIF 471 (513)
Q Consensus 428 g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 471 (513)
|+.+.++++++.+.+.....+.+..+ +...++......+++.+.
T Consensus 347 g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 391 (406)
T PRK11551 347 GAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALA 391 (406)
T ss_pred hHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHH
Confidence 99999999988777777776665432 333344444444444333
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-30 Score=259.11 Aligned_cols=390 Identities=18% Similarity=0.265 Sum_probs=241.1
Q ss_pred HHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHH-HHHH-----HHHHHHHHhhccccccccCchHHHHHHHHH
Q 010317 33 CALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVL-VGIL-----NVFSLIGSLASGKTSDYIGRRYTIVVAAAT 106 (513)
Q Consensus 33 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~-~s~~-----~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~ 106 (513)
......++.+.+++|+..+++..|.+.+|++.++++.+.. .+.. +++..+|+++.|+++||+|||+.++.+.++
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 95 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence 4566677899999999999999999999999988876543 3322 233357899999999999999999999999
Q ss_pred HHHHHHHHHhcCcHH--------HHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 010317 107 FLVGALAMGLAPNYP--------FLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYA 178 (513)
Q Consensus 107 ~~i~~~~~~~~~~~~--------~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~ 178 (513)
+.+++.+++++++++ .++++|+++|++.|...+....+++|++|+++|++.+++......+|..++..++..
T Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~ 175 (434)
T PRK15075 96 MASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYL 175 (434)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 468999999999999988888999999999999999999887777776666655544
Q ss_pred hcCC-----CCCcchHHHHHhhhHHHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Q 010317 179 LSGL-----PGNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKES 253 (513)
Q Consensus 179 ~~~~-----~~~~~Wr~~~~~~~~~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (513)
+... ....+||+.|++..+...+........||++.+...+ .+
T Consensus 176 l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~-------------------------------~~- 223 (434)
T PRK15075 176 LNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK-------------------------------HR- 223 (434)
T ss_pred HHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh-------------------------------hc-
Confidence 3211 1356999999876544332222222334432211000 00
Q ss_pred CCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHh-CCCCCchhHHHHHH
Q 010317 254 SPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKG-AGIHRKPVLFGINV 332 (513)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~ 332 (513)
+ + .+..++...+ .++..... ....+.+..+.+.+.+|.|.++++ .+.+... ......
T Consensus 224 -~---~-----------~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~-~~~~~~ 281 (434)
T PRK15075 224 -P---S-----------MREIFRSLAA-----NWRIVLAG-MLMVAMTTVSFYLITVYTPTFGKTVLHLSAAD-SLLVTL 281 (434)
T ss_pred -c---c-----------cccHHHHHHH-----hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHH
Confidence 0 0 0001111110 11111111 122223344556677889998875 3544332 222445
Q ss_pred HHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeee
Q 010317 333 VMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWV 412 (513)
Q Consensus 333 ~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (513)
+..++..++.++.+++.||+|||+.++.+............ ... ..................... ...+..+.
T Consensus 282 ~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~ 354 (434)
T PRK15075 282 CVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPAL--SWL-VAAPSFARMLAVELWLSFLYG----SYNGAMVV 354 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH--HHH-HcCCchHHHHHHHHHHHHHHH----HHHhhHHH
Confidence 56677788889999999999999987765433221111110 000 111111111111111111111 11223346
Q ss_pred eecccCChhhHhhHHHHHHHHHHHH-HHHHHHHHHHHHHhcccch---hHHHHHHHHHHHHHhhheecccCCCCCHHH
Q 010317 413 YSSEIFPLRLRAQGSALAISVNRLV-SGVISMTFLSISHRLSFGG---TFFLLAGITTVGTIFFYVFLPETKGKTLEE 486 (513)
Q Consensus 413 ~~~el~P~~~R~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pet~~~~~~e 486 (513)
+.+|.+|++.|+++.|+.+.+++.. +.+.+.....+.+..+... .+.+.++++ .++..+.+++-++.+++.
T Consensus 355 ~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 429 (434)
T PRK15075 355 ALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVC---GLIATLVLYRRRGARLQA 429 (434)
T ss_pred HHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHH---HHHHHHHhccccchhhhh
Confidence 7889999999999999988888764 6666666666666555322 223333322 222334556666655543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.3e-30 Score=264.89 Aligned_cols=427 Identities=16% Similarity=0.168 Sum_probs=263.9
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHH
Q 010317 23 KKGLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVV 102 (513)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~ 102 (513)
++..++.++.......+..+.+++|....++..|.+.+++|++..+.++..+.+.+++.+++++.|+++||+|||+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 90 (496)
T PRK03893 11 YRHLNRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVI 90 (496)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 33444566667777788888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCC
Q 010317 103 AAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGL 182 (513)
Q Consensus 103 ~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 182 (513)
+.+++.++.+..+++++++.+++.|++.|++.+...+....++.|.+|+++|++..+.......+|..+++.+...+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-- 168 (496)
T PRK03893 91 SIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV-- 168 (496)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 999999999999999999999999999999999988888899999999999999999998888888888877665443
Q ss_pred CCCcchHHHHHhhhHHHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHH-H--HHHhhcCCCCCC
Q 010317 183 PGNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDM-I--KAAKESSPSGPD 259 (513)
Q Consensus 183 ~~~~~Wr~~~~~~~~~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~ 259 (513)
...+||+.|++..++.++..+....+||++++...+++.++.++..+.....+.+........ . ............
T Consensus 169 -~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (496)
T PRK03893 169 -PVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQN 247 (496)
T ss_pred -ccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 356899999887666555555556789887764332221111111111100000000000000 0 000000000000
Q ss_pred CCCCCCCCCccCcchhhhh-hcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHH-hCCCCCchhHHHHHHHHhHH
Q 010317 260 DDQGPPKGNFTGEGVWKDL-ILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFK-GAGIHRKPVLFGINVVMGLA 337 (513)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~ 337 (513)
........ ......+... ..... .+...........+...........+.|.+++ ..+.+... ...+.....++
T Consensus 248 ~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~-~g~~~~~~~~~ 323 (496)
T PRK03893 248 AAIVAVLG-LLCAAIFISFMVQSSG--KRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHT-VANVLFFSGFG 323 (496)
T ss_pred hhHHHHHH-HHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHH
Confidence 00000000 0000000000 00000 01111111111111111122334567788885 44444332 22344556677
Q ss_pred HHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeeccc
Q 010317 338 KTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEI 417 (513)
Q Consensus 338 ~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el 417 (513)
..++.++.+++.||+|||+.+..+........+.+.. .... ..... .........+..+..+....+.+|.
T Consensus 324 ~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (496)
T PRK03893 324 AAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFA-----IGGA-NVWVL---GLLLFFQQMLGQGISGLLPKLIGGY 394 (496)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh-----cccc-HHHHH---HHHHHHHHHHhcccchhhHHHHHhh
Confidence 8889999999999999999877654332222211111 1111 11111 1111111222223334445678899
Q ss_pred CChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Q 010317 418 FPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGIT 465 (513)
Q Consensus 418 ~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (513)
+|++.|+++.|+.++++++++.+.+.....+.+..++...++..++..
T Consensus 395 ~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 395 FDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred CCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 999999999999999999877777777777777777666665544433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=248.66 Aligned_cols=409 Identities=12% Similarity=0.109 Sum_probs=282.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHH
Q 010317 24 KGLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVA 103 (513)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~ 103 (513)
+.+++.++.+....++++...++.+.+.+.+.|.+.+|.++|.+|.|++.|.+++.|.++.++.|.++||.+.|..+..+
T Consensus 21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g 100 (448)
T COG2271 21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence 44566677788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCC
Q 010317 104 AATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLP 183 (513)
Q Consensus 104 ~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 183 (513)
+++.++.+++.+++++...+.+.-++.|...|...+.+...++.|+|+++||+..++.+.+.++|..+.+.+... ....
T Consensus 101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~l-a~~~ 179 (448)
T COG2271 101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALL-AFFA 179 (448)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHH-HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987776665421 1112
Q ss_pred CCcchHHHHHhhhHHHHHHHHH-HhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 010317 184 GNINWRIMLGLAAVPAAVIGVG-VLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQ 262 (513)
Q Consensus 184 ~~~~Wr~~~~~~~~~~~i~~~~-~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (513)
.+.+||..|++-++.++++.+. ++.++++|+-. |- ..+++..+ |..+.. +++++. +
T Consensus 180 ~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~---GL-----P~ie~~~~------d~~e~~-~~~~~~--------~ 236 (448)
T COG2271 180 FHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE---GL-----PPIEEYRG------DPLEIY-EEEKEN--------E 236 (448)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc---CC-----CCHHHhhc------Cchhhh-hhhccC--------C
Confidence 3458999999988887766664 55567777411 10 00000000 000000 000000 0
Q ss_pred CCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCC-CCCchhHHHHHHHHhHHHHHH
Q 010317 263 GPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAG-IHRKPVLFGINVVMGLAKTFF 341 (513)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 341 (513)
. ...++.+. +..++++.++.+++........-+++.-|.|.++.+.. .+...... ...+.=.++.+|
T Consensus 237 --~-------ls~~~i~~--~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~-a~~lfE~agl~G 304 (448)
T COG2271 237 --G-------LTAWQIFV--KYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANW-AISLFEVAGLPG 304 (448)
T ss_pred --C-------ccHHHHHH--HHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHH-HHHHHHHHhhHH
Confidence 0 01122222 13445566666666666666667889999999997653 33322222 333445678999
Q ss_pred HHHHHHHhhcc--CChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCC
Q 010317 342 VVLSALHLDKF--GRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFP 419 (513)
Q Consensus 342 ~~~~~~~~d~~--grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P 419 (513)
++++||++||+ |||..+.+.+. +.+ .+.+.........+.+....++. ..+++..|+.-+.-+...|+.|
T Consensus 305 ~Ll~GwlSDklfkgrR~p~~~i~~---~~i-~~~~~~~w~~~~~~~~l~~~~l~----~iGf~IyGPqmLiGl~a~e~~p 376 (448)
T COG2271 305 TLLAGWLSDKLFKGRRGPMALIFM---LLI-TASLVLYWLAPNGSYLLDAILLF----IIGFLIYGPQMLIGLAAAEFVP 376 (448)
T ss_pred HHHHHHHHHHhcccccchHHHHHH---HHH-HHHHHHHHcCCCccHHHHHHHHH----HHHHHHhhHHHHHHHHHhcccc
Confidence 99999999995 77876643211 111 11111111111121122222222 2233334443344456789999
Q ss_pred hhhHhhHHHHHHHHHHHHHH-HHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhheec
Q 010317 420 LRLRAQGSALAISVNRLVSG-VISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFL 476 (513)
Q Consensus 420 ~~~R~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (513)
++.-|++.|+...++++++. ........+.+..++.+.|+++.+.++++.+......
T Consensus 377 K~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 377 KKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred HhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999544 4444455555667888888888877777766554433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=249.59 Aligned_cols=408 Identities=14% Similarity=0.117 Sum_probs=249.5
Q ss_pred HHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHH
Q 010317 30 AFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLV 109 (513)
Q Consensus 30 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i 109 (513)
.|......++.....+.++..++...|+++++ |+++++.++..+++.+++++++++.|+++||+|||+++.++.+++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i 105 (452)
T PRK11273 27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 105 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHH
Confidence 44444445556666777777788888999988 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc----CcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHH-HHHHHHHHHhcCCCC
Q 010317 110 GALAMGLA----PNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGI-LSGYVFNYALSGLPG 184 (513)
Q Consensus 110 ~~~~~~~~----~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~ 184 (513)
+....+++ +++..+++.|++.|++.|...+.....+.|++|+++|++++++.+....+|. +.++++......
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~--- 182 (452)
T PRK11273 106 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW--- 182 (452)
T ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---
Confidence 99888876 3788899999999999988877777778999999999999999888777764 444443322221
Q ss_pred CcchHHHHHhhhHHHHHH-HHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 010317 185 NINWRIMLGLAAVPAAVI-GVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQG 263 (513)
Q Consensus 185 ~~~Wr~~~~~~~~~~~i~-~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (513)
..+||+.|++.+++.++. .+..+++||+|+....+. .+|.. + +. ++. .. +++.
T Consensus 183 ~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~--------------~---~~-~~~----~~--~~~~- 236 (452)
T PRK11273 183 FNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPP-IEEYK--------------N---DY-PDD----YN--EKHE- 236 (452)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCC-hhhhh--------------h---cc-ccc----cc--cccC-
Confidence 238999999887766554 445667788875321000 00000 0 00 000 00 0000
Q ss_pred CCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhC-CCCCchhHHHHHHHHhHHHHHHH
Q 010317 264 PPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGA-GIHRKPVLFGINVVMGLAKTFFV 342 (513)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 342 (513)
+ .. ..++.+.. ...+++.++......+......+....|.|.++++. +.+.... ........++..++.
T Consensus 237 --~-~~----~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~-~~~~~~~~~~~~~g~ 306 (452)
T PRK11273 237 --Q-EL----TAKQIFMQ--YVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS-SWAYFLYEYAGIPGT 306 (452)
T ss_pred --C-Cc----cHHHHHHH--HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHH
Confidence 0 00 01111100 011112222222222222233455667899999764 4443322 223345566777889
Q ss_pred HHHHHHhhcc--CChhHHHh-hhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCC
Q 010317 343 VLSALHLDKF--GRRPLLLL-GSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFP 419 (513)
Q Consensus 343 ~~~~~~~d~~--grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P 419 (513)
++.+++.||+ +||..... .........+. .. . ....+.......+... +....+.......+..|.+|
T Consensus 307 ~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~--~~--~-~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~p 377 (452)
T PRK11273 307 LLCGWMSDKVFRGNRGATGVFFMTLVTIATIV--YW--L-NPAGNPTVDMACMIVI----GFLIYGPVMLIGLHALELAP 377 (452)
T ss_pred HHHHHHHHHHccCCcchHHHHHHHHHHHHHHH--HH--H-hcccChHHHHHHHHHH----HHHHHhHHHHHHHHHHHHcC
Confidence 9999999999 55543221 11111111111 11 1 1111111111111111 11111111122345679999
Q ss_pred hhhHhhHHHHHHHHHHHHHHH-HHHHHHHHHHhcccchhHHHHHHHHHHHHHhhheecccCCCCCHHHH
Q 010317 420 LRLRAQGSALAISVNRLVSGV-ISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEEM 487 (513)
Q Consensus 420 ~~~R~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~e~ 487 (513)
++.|+++.|+.+.+.++++.+ .+.....+.+..++...|++.++.++++.+.... +..+++|+.||.
T Consensus 378 ~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 445 (452)
T PRK11273 378 KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV-VMIGEKRHHEEL 445 (452)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH-HhccccchHHHH
Confidence 999999999999999887665 3566677777777888888888777776555433 333444555544
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-29 Score=249.87 Aligned_cols=388 Identities=18% Similarity=0.181 Sum_probs=253.1
Q ss_pred HHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHH
Q 010317 42 ILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYP 121 (513)
Q Consensus 42 ~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~ 121 (513)
....+|...++...|.+++++|+++.+.+++.+++.++..+++++.|+++||+|||+++..+.+++.++..+.+++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (399)
T TIGR00893 4 VINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYV 83 (399)
T ss_pred hHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHH
Confidence 45567888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHH
Q 010317 122 FLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAV 201 (513)
Q Consensus 122 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i 201 (513)
.++++|++.|++.+...+....++.|++|+++|++..+..+....+|.++++.+...+. ...+||+.|++.++..++
T Consensus 84 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~ 160 (399)
T TIGR00893 84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL---IHFSWQWAFIIEGVLGII 160 (399)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH---HhCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888877765433 245899999988777665
Q ss_pred HHHH-HhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhc
Q 010317 202 IGVG-VLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLIL 280 (513)
Q Consensus 202 ~~~~-~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (513)
..+. .+..||+|+-. +...++.+ +... +..... ....++ . .......++.++
T Consensus 161 ~~~~~~~~~~~~~~~~--~~~~~~~~-------------~~~~----~~~~~~-~~~~~~----~---~~~~~~~~~~~~ 213 (399)
T TIGR00893 161 WGVLWLKFIPDPPQKA--KWLTEEEK-------------YIVV----GGLLAE-QQGKGP----S---TPKKYQIKELLK 213 (399)
T ss_pred HHHHhhheecCCCCcc--ccCCHHHH-------------hhcc----hhhccc-cccccc----c---CCCccchHHHhc
Confidence 5444 44567765310 00000000 0000 000000 000000 0 000111222222
Q ss_pred CCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhC-CCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHH
Q 010317 281 KPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGA-GIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLL 359 (513)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~ 359 (513)
. +.++......+...........+.|.++++. +.+. ...........+...++.++.+++.||++||+...
T Consensus 214 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 285 (399)
T TIGR00893 214 D-------RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSI-LEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSL 285 (399)
T ss_pred C-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Confidence 1 1122222223333444455666778777543 3222 22222445566778889999999999999996211
Q ss_pred h-hhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHH
Q 010317 360 L-GSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVS 438 (513)
Q Consensus 360 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~ 438 (513)
. .......+.+...+...... .......... ... ...+..+..+..+.+.+|.+|++.|+++.|+.+.+.++++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ 360 (399)
T TIGR00893 286 VFARKTAIIAGLVLSLLMFATN-YVNIPYAALA---LVA-LGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGG 360 (399)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHH---HHH-HHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhh
Confidence 1 11111111111111111111 1111111111 111 1222233455678889999999999999999999999888
Q ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHhh
Q 010317 439 GVISMTFLSISHRLS-FGGTFFLLAGITTVGTIFF 472 (513)
Q Consensus 439 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 472 (513)
.+.+.....+.+..+ +...+++.+++.+++.+..
T Consensus 361 ~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 361 IVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred hhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 887777777777666 6777777777766665544
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-28 Score=247.15 Aligned_cols=381 Identities=15% Similarity=0.079 Sum_probs=227.9
Q ss_pred HHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHH
Q 010317 35 LLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAM 114 (513)
Q Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~ 114 (513)
.......+.+.++....++..|.+++|+|++.++.+++.+++.+++.+++++.|+++||+|||+++..+.++++++.+++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~ 118 (476)
T PLN00028 39 HLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCM 118 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 33344455555566667788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHh----cC--CCCCcch
Q 010317 115 GLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYAL----SG--LPGNINW 188 (513)
Q Consensus 115 ~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~----~~--~~~~~~W 188 (513)
++++++..++++|++.|++.+... ....+++|++|+++||++.++......+|..++..+...+ .. ..+..+|
T Consensus 119 ~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gW 197 (476)
T PLN00028 119 SLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAW 197 (476)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhh
Confidence 999999999999999999887643 3455789999999999999987765555555543332221 11 1123589
Q ss_pred HHHHHhhhHHHHHHHHHHhccC-CCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Q 010317 189 RIMLGLAAVPAAVIGVGVLIMP-ESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKG 267 (513)
Q Consensus 189 r~~~~~~~~~~~i~~~~~~~lp-Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (513)
|+.|++.+++.++..+..++++ +.|. ++.++.. ++ . .. + + .
T Consensus 198 r~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~---------------------~~---~-~~---~----~-~ 239 (476)
T PLN00028 198 RIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELK---------------------KS---G-TM---P----K-D 239 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHH---------------------hc---C-cc---c----c-c
Confidence 9999998887766655544444 3332 1100000 00 0 00 0 0 0
Q ss_pred CccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhC-CCCCchhHHHHHHHHhHHHHHHHHHHH
Q 010317 268 NFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGA-GIHRKPVLFGINVVMGLAKTFFVVLSA 346 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (513)
.....+++.++. +..+.....++.+......+..+.|.++... +.+... ...+..+.+++..++.++.|
T Consensus 240 --~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~-a~~~~~~~~~~~~ig~~~~G 309 (476)
T PLN00028 240 --SFSKVLRYGVTN-------YRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLET-AGAIAASFGLMNLFARPAGG 309 (476)
T ss_pred --cHHHHHHHHHcC-------chhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHhhhH
Confidence 000012222211 1111111112222222234455677776543 444322 23355567788899999999
Q ss_pred HHhhccCChh-----HHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChh
Q 010317 347 LHLDKFGRRP-----LLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLR 421 (513)
Q Consensus 347 ~~~d~~grr~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~ 421 (513)
+++||++||. ..+. ........+.+... ............++.. .++.....+..+.+.+|+.| +
T Consensus 310 ~lsDr~~~r~~~~~r~~~~-~~~~~l~~i~~~~~----~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~-~ 379 (476)
T PLN00028 310 YLSDVAARRFGMRGRLWAL-WIVQTLGGVFCIWL----GRANSLGAAIVVMILF----SIFVQAACGATFGIVPFVSR-R 379 (476)
T ss_pred HHHHHHHHhcCcchhHHHH-HHHHHHHHHHHHHh----cccchHHHHHHHHHHH----HHHHHHhhhhhcccCcccCh-h
Confidence 9999998762 1111 11111111111110 1111111111111111 11111111235666778755 6
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhee
Q 010317 422 LRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVF 475 (513)
Q Consensus 422 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (513)
.|+++.|+.+..+++++.+.+..+. ..+..++...|++.+++.+++++..++.
T Consensus 380 ~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 380 SLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred hchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 8999999998888877666665432 2222346677888887777776665443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=239.10 Aligned_cols=352 Identities=16% Similarity=0.157 Sum_probs=233.6
Q ss_pred ccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 010317 50 VMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMI 129 (513)
Q Consensus 50 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l 129 (513)
..++..|.+++|+|+++++.++..+.+.+++.+++++.|+++||+|||+++..+.++..++++.+++++|++.+++.|++
T Consensus 27 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ 106 (390)
T PRK03545 27 VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIG 106 (390)
T ss_pred HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHH-Hhc
Q 010317 130 AGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVG-VLI 208 (513)
Q Consensus 130 ~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~-~~~ 208 (513)
+|++.+...+....++.|++|+++|+++.++......+|..+++.++..+. +..+||+.|++.++..++..+. ...
T Consensus 107 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~---~~~gw~~~f~~~~~~~~l~~~~~~~~ 183 (390)
T PRK03545 107 IAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG---QYLGWRTTFLAIGGGALITLLLLIKL 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH---HHhcHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998888888889999999999999999999888899888877765443 3459999999988776655443 444
Q ss_pred cCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHH
Q 010317 209 MPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRR 288 (513)
Q Consensus 209 lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (513)
+||.|+ ++. .+ .++ .++.+++ +..+.
T Consensus 184 ~~~~~~-----~~~--------------~~----~~~-----------------------------~~~~~~~--~~~~~ 209 (390)
T PRK03545 184 LPLLPS-----EHS--------------GS----LKS-----------------------------LPLLFRR--PALVS 209 (390)
T ss_pred CCCCCC-----CCc--------------ch----HHH-----------------------------HHHHHhC--cHHHH
Confidence 666542 000 00 000 0111111 11111
Q ss_pred HHHHHHHHHHHhhhccchhhhccHHHHHHh-CCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHH
Q 010317 289 MLIAAVGINFFMQASGNDAVIYYTPAVFKG-AGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVG 367 (513)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~ 367 (513)
...... ......+....+.|.++.+ .+.+.... .......+++..++.++.+++.||++||..... ......
T Consensus 210 ~~~~~~-----~~~~~~~~~~~~~~~~l~~~~g~s~~~~-~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~-~~~~~~ 282 (390)
T PRK03545 210 LYLLTV-----VVVTAHFTAYSYIEPFVQQVAGLSENFA-TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIA-IALLLV 282 (390)
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCCccHH-HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHH
Confidence 111111 1111112223345555554 34333322 224445667888999999999999998875433 222222
Q ss_pred HHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 010317 368 SLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLS 447 (513)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~ 447 (513)
....+.. . ..+.+......+.. +.......+....+..|..| +.|+.+.|+.+.+.+++..+.+...+.
T Consensus 283 ~~~~l~~-----~-~~~~~~~~~~~~l~----g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~ 351 (390)
T PRK03545 283 CLLLLLP-----A-ANSEWHLSVLSIFW----GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQ 351 (390)
T ss_pred HHHHHHH-----H-hchHHHHHHHHHHH----HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211111 0 11111111111111 11111111222345567767 578999999999988877777777777
Q ss_pred HHHhcccchhHHHHHHHHHHHHHhhheec
Q 010317 448 ISHRLSFGGTFFLLAGITTVGTIFFYVFL 476 (513)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (513)
+.+..++...+++.+++.++++++.....
T Consensus 352 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 352 VSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888888888888877776654443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=237.12 Aligned_cols=362 Identities=15% Similarity=0.124 Sum_probs=242.1
Q ss_pred cccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 010317 49 GVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRM 128 (513)
Q Consensus 49 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~ 128 (513)
...++..|.+++|+|+++++.++..+++.+++.+++++.|+++||+|||+++..+..+++++...+++++|+..++++|+
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~ 105 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL 105 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence 66778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHhc
Q 010317 129 IAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLI 208 (513)
Q Consensus 129 l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~~ 208 (513)
++|++.+...+....++.|++| ++|+++++.+......|..++..+...+.. ...+||+.+.+.+++.++.....+.
T Consensus 106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~--~~~~w~~~~~~~~~~~~~~~~~~~~ 182 (393)
T PRK09705 106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQ--HSETWYQTLAWWALPAVVALFAWWW 182 (393)
T ss_pred HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888888999987 789999999888777777777666544331 1238999877666554433322211
Q ss_pred cCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHH
Q 010317 209 MPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRR 288 (513)
Q Consensus 209 lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (513)
..+ ++++ ++ + ++ +.. .++..+ .+..+
T Consensus 183 ~~~--------~~~~-------------~~-------------~--~~----~~~-----------~~~~l~--~~~~~- 208 (393)
T PRK09705 183 QSA--------REVA-------------SS-------------H--KT----TTT-----------PVRVVF--TPRAW- 208 (393)
T ss_pred Hhc--------CCCc-------------cc-------------c--CC----CcC-----------Cccccc--CHhHH-
Confidence 110 0000 00 0 00 000 000111 01111
Q ss_pred HHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHH
Q 010317 289 MLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGS 368 (513)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~ 368 (513)
.....++....+++....|.|.++.+.+.+..... ......+++..++.++.+++.||.+||+....+.......
T Consensus 209 ----~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag-~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~ 283 (393)
T PRK09705 209 ----TLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSG-SLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVG 283 (393)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhh-HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 11112222333455667788888887654433322 2445566788899999999999999998877665443333
Q ss_pred HHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccC-ChhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 010317 369 LLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIF-PLRLRAQGSALAISVNRLVSGVISMTFLS 447 (513)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~-P~~~R~~~~g~~~~~~~~~~~~~~~~~~~ 447 (513)
...+.. .. .. ..... .... ........+.......+.+ |++.|+++.|+.+.++++++.+.+.....
T Consensus 284 ~~~~~~----~~-~~-~~~~~---~~l~---g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~ 351 (393)
T PRK09705 284 FCGFIW----LP-LQ-LPVLW---AMVC---GLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGV 351 (393)
T ss_pred HHHHHH----cc-ch-HHHHH---HHHH---HHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 11 11 11111 1111 1111111222333444555 57889999999999999988888888777
Q ss_pred HHHhcc-cchhHHHHHHHHHHHHHhhheecccCCCCCH
Q 010317 448 ISHRLS-FGGTFFLLAGITTVGTIFFYVFLPETKGKTL 484 (513)
Q Consensus 448 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 484 (513)
+.+..+ +...+.+....+++..+..+.+.|||+.|..
T Consensus 352 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 352 LRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 777654 5566777777777777776778899877654
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=237.26 Aligned_cols=381 Identities=20% Similarity=0.247 Sum_probs=247.7
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHH
Q 010317 28 KYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATF 107 (513)
Q Consensus 28 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~ 107 (513)
++.+.......+..+.++++....++..|.+.+++|.++.+.+++.++..++..+++++.|+++||+|||+.+..+.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 92 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF 92 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence 34455556666677788888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcc
Q 010317 108 LVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNIN 187 (513)
Q Consensus 108 ~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 187 (513)
.++.++.+++++++.+++.|++.|++.+...+....++.|++|+++|++..++......+|..+++.+...+. ...+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~g 169 (398)
T TIGR00895 93 SVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI---PVFG 169 (398)
T ss_pred HHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHh---hccc
Confidence 9999999999999999999999999999999999999999999999999999999888889888877654443 3468
Q ss_pred hHHHHHhhhHH-HHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 010317 188 WRIMLGLAAVP-AAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPK 266 (513)
Q Consensus 188 Wr~~~~~~~~~-~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (513)
||+.+++.++. .+...+..+++||++++...+ +.+++.+..++.. ... ..+.+....++...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~~~- 232 (398)
T TIGR00895 170 WRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIA--------------PQM-QAEAQSALPEQKAT- 232 (398)
T ss_pred ceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHH--------------Hhc-cccccccccccccc-
Confidence 99999887544 444444567789998876544 3333332221110 000 00000000000000
Q ss_pred CCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHH
Q 010317 267 GNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSA 346 (513)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (513)
....+..++.+.. .+..+.... .....+......+....+.|.+.+..+.+.... ........++..++.++.+
T Consensus 233 -~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~ 306 (398)
T TIGR00895 233 -QGTKRSVFKALFQ--GKTARITVL--LWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLA-ATGGALFNFGGVIGSIIFG 306 (398)
T ss_pred -cchhhHHHHHHhc--chhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 0001111221211 111122111 112222333445556677886666655443332 2344556678889999999
Q ss_pred HHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhH
Q 010317 347 LHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQG 426 (513)
Q Consensus 347 ~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~ 426 (513)
++.||++||...... ....+...++.. . . .+........+.. +++.....+..+.+.+|.+|++.|+++
T Consensus 307 ~l~~~~~~~~~~~~~-~~~~~~~~~~~~--~--~--~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~g~~ 375 (398)
T TIGR00895 307 WLADRLGPRVTALLL-LLGAVFAVLVGS--T--L--FSPTLLLLLGAIA----GFFVNGGQSGLYALMALFYPTAIRATG 375 (398)
T ss_pred HHHhhcchHHHHHHH-HHHHHHHHHHHH--H--h--hCHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 999999999544332 222222111111 0 1 1111111111111 111112223456788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010317 427 SALAISVNRLVSGVISMTF 445 (513)
Q Consensus 427 ~g~~~~~~~~~~~~~~~~~ 445 (513)
.|+.+.++++++.+.+...
T Consensus 376 ~g~~~~~~~~g~~~g~~~~ 394 (398)
T TIGR00895 376 VGWAIGIGRLGAIIGPILA 394 (398)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 9999999998766655543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-28 Score=247.99 Aligned_cols=398 Identities=11% Similarity=0.075 Sum_probs=257.5
Q ss_pred CCchHHHHHHHHHHHHHHHHhhcccccchhhHHHHh----------------------hhCCCchhHHHHHHHHHHHHHH
Q 010317 25 GLNKYAFICALLASINSILLGYDIGVMSGAVLYIKE----------------------DLEITEVQVEVLVGILNVFSLI 82 (513)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------------------~~~~s~~~~~~~~s~~~~g~~i 82 (513)
.+.+.++.+..+.++...+...|+..++.+.+.+++ |++.+.++.+++.+.+.+++.+
T Consensus 12 ~~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~ 91 (465)
T TIGR00894 12 YFCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQII 91 (465)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHH
Confidence 345666777788888888889999999998887766 7899999999999999999999
Q ss_pred HHhhccccccccCchHHHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccch
Q 010317 83 GSLASGKTSDYIGRRYTIVVAAATFLVGALAMGL--APNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSL 160 (513)
Q Consensus 83 g~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~--~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~ 160 (513)
++++.|+++||+|||+++..+.++++++.+++.+ ..++..+++.|+++|++.+...+....+++|++|+++|++++++
T Consensus 92 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 171 (465)
T TIGR00894 92 IQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM 171 (465)
T ss_pred HHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999999999999999999888754 36688899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCC-cchHHHHHhhhHHHHHHHHHH-hccCCCchhHHhcCCHHHHHHHHHHhcCChHH
Q 010317 161 PEVFIVLGILSGYVFNYALSGLPGN-INWRIMLGLAAVPAAVIGVGV-LIMPESPRWLVMKSRYDEAKRVLLKVSDTEQE 238 (513)
Q Consensus 161 ~~~~~~~G~~~~~~~~~~~~~~~~~-~~Wr~~~~~~~~~~~i~~~~~-~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~ 238 (513)
......+|..+++.+...+. .. .+||+.|++.++++++..+.+ ++.+|+|+.. .+.+ +++
T Consensus 172 ~~~~~~~g~~i~~~l~~~l~---~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~---~~~~------------~~~ 233 (465)
T TIGR00894 172 STSGFQLGTFIFLPISGWLC---ESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH---PCIS------------KFE 233 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC---CCCC------------HHH
Confidence 99888888888877755443 24 389999999888877665544 4456777421 0000 000
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHh
Q 010317 239 AKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKG 318 (513)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 318 (513)
++.. ++..+. + ++ +. +....+++.++ ++.++......+.+..+.+.+..|+|.++++
T Consensus 234 -~~~i----~~~~~~--~--~~-~~------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~ 290 (465)
T TIGR00894 234 -KKYI----NSSLQG--Q--KG-ST------RQSLPIKAIPK-------SLPVWAIWFAIFGHFWLYTILPTYLPTFISW 290 (465)
T ss_pred -HHHH----Hhhccc--c--cC-CC------CCCCCHHHHhc-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000000 0 00 00 00112443332 2222333344445555567777899999865
Q ss_pred C-CCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHH-------HhhhHHHHHHHHHHHHHhhccCCCCchhHHHH
Q 010317 319 A-GIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLL-------LLGSSGMVGSLLLLGIGSKILEGSTPTVVVVL 390 (513)
Q Consensus 319 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (513)
. +.+... ......++.++..++.++++++.||.++|+.. +...+..... ......... . ....... .
T Consensus 291 ~~g~s~~~-~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~-~ 365 (465)
T TIGR00894 291 VLRVSGKE-NGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGP-GIFAYALPY-L-SAAFYLT-I 365 (465)
T ss_pred HhCcChHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHH-c-CCchHHH-H
Confidence 3 433322 22345566778889999999999987654221 1111111000 011111110 0 1111111 1
Q ss_pred HHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccchhHHHHHHHHHH
Q 010317 391 CIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRL---SFGGTFFLLAGITTV 467 (513)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 467 (513)
..+... .++..+..+..+....|..|+ .++++.|+.+..+.+++.+.+.....+.+.. .+..+|.+.++..++
T Consensus 366 ~~~~l~---~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i 441 (465)
T TIGR00894 366 IILTLA---NAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNIL 441 (465)
T ss_pred HHHHHH---HHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHH
Confidence 111111 111111122334455677776 7999999999999988877777766554432 255677777777777
Q ss_pred HHHhh
Q 010317 468 GTIFF 472 (513)
Q Consensus 468 ~~~~~ 472 (513)
+.++.
T Consensus 442 ~~i~~ 446 (465)
T TIGR00894 442 CVIFY 446 (465)
T ss_pred HHHHe
Confidence 66554
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=221.66 Aligned_cols=367 Identities=18% Similarity=0.179 Sum_probs=250.6
Q ss_pred HHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHH
Q 010317 34 ALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALA 113 (513)
Q Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~ 113 (513)
.....++.+..|.+.......+|.+.+|+|+|..+.|+..|+|.+++.+++++...++||+.||+.++..+.++.+++.+
T Consensus 15 l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l 94 (394)
T COG2814 15 LLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLL 94 (394)
T ss_pred HHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHH
Confidence 34445556666777778888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Q 010317 114 MGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLG 193 (513)
Q Consensus 114 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~ 193 (513)
+++++||+.++++|++.|+..|...+....+..++.|+++|+++.+.......++.++|.-++-.++ +.+|||+.|+
T Consensus 95 ~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig---~~~GWR~~F~ 171 (394)
T COG2814 95 SALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLG---QLFGWRATFL 171 (394)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHH---HHhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999988888888777766665554 4679999999
Q ss_pred hhhHHHHHHHHH-HhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCc
Q 010317 194 LAAVPAAVIGVG-VLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGE 272 (513)
Q Consensus 194 ~~~~~~~i~~~~-~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (513)
+.+..+++..+. +..+| |+-.. ++ .+.+.++
T Consensus 172 ~ia~l~ll~~~~~~~~lP--~~~~~--~~-------------~~~~~~~------------------------------- 203 (394)
T COG2814 172 AIAVLALLALLLLWKLLP--PSEIS--GS-------------LPGPLRT------------------------------- 203 (394)
T ss_pred HHHHHHHHHHHHHHHhCC--CccCC--CC-------------CCcchhH-------------------------------
Confidence 988887766654 55677 21000 00 0000000
Q ss_pred chhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhcc
Q 010317 273 GVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKF 352 (513)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 352 (513)
..+.++ .|..... .....+.....+..+.|..|.+-+..+.+.+ .........+++..++..++|++.||
T Consensus 204 --~~~~l~--~p~v~~~----l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~-~vs~~Ll~~Gv~~~~Gn~~gGrl~dr- 273 (394)
T COG2814 204 --LLRLLR--RPGVLLG----LLATFLFMTGHFALYTYIRPFLESVAGFSVS-AVSLVLLAFGIAGFIGNLLGGRLADR- 273 (394)
T ss_pred --HHHHhc--CchHHHH----HHHHHHHHcchhhhHHhHHHHHHHccCCCHh-HHHHHHHHHHHHHHHHHHHHhhhccc-
Confidence 001111 1111111 1112222222334445555655555454433 33345567889999999999999999
Q ss_pred CChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccc-eeeeeecccCChhhHhhHHHHHH
Q 010317 353 GRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGP-ITWVYSSEIFPLRLRAQGSALAI 431 (513)
Q Consensus 353 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~el~P~~~R~~~~g~~~ 431 (513)
+.|+.+......+....+.+... ... ..... .....+. +...+.+ ...+...+.. ++.+..+.++..
T Consensus 274 ~~~~~l~~~~~l~a~~~l~l~~~-----~~~--~~~~~--~~~~~wg--~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~ 341 (394)
T COG2814 274 GPRRALIAALLLLALALLALTFT-----GAS--PALAL--ALLFLWG--FAFSPALQGLQTRLARLA-PDAADLAGSLNV 341 (394)
T ss_pred cchhHHHHHHHHHHHHHHHHHHh-----cch--HHHHH--HHHHHHH--HHhhhhhhHHHHHhcccC-CCchHHHHHHHH
Confidence 77777665544444443333221 111 11111 1111111 1112211 2223334432 467899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhh
Q 010317 432 SVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFY 473 (513)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (513)
..-|++.......-....++.++....+..+.+.+++.++..
T Consensus 342 aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~ 383 (394)
T COG2814 342 AAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLAL 383 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence 999987777767667777777777777777777777666543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=240.33 Aligned_cols=406 Identities=13% Similarity=0.090 Sum_probs=252.6
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHH
Q 010317 29 YAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFL 108 (513)
Q Consensus 29 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~ 108 (513)
..+.......+.+...+.++..+....|++++ .|+++++.++..+++.++..+++++.|+++||+|||+.+..+.++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~ 102 (438)
T TIGR00712 24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence 34555556666777777788888888888886 59999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc----CcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHH-HHHhcCCC
Q 010317 109 VGALAMGLA----PNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVF-NYALSGLP 183 (513)
Q Consensus 109 i~~~~~~~~----~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~ 183 (513)
++....++. +++..+.+.|++.|++.|...+....++.|++|+++|++++++.+....+|..+++.+ ...+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~--- 179 (438)
T TIGR00712 103 AVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA--- 179 (438)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH---
Confidence 998887764 4677888999999999998888777888999999999999999888887777665443 32222
Q ss_pred CCcchHHHHHhhhHHHHHHH-HHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 010317 184 GNINWRIMLGLAAVPAAVIG-VGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQ 262 (513)
Q Consensus 184 ~~~~Wr~~~~~~~~~~~i~~-~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (513)
...+||+.|++.++..++.. +..+++||+|+....+ +.++. .++.. ++ . .+ +.
T Consensus 180 ~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~----------~~--~--~~--~~-- 233 (438)
T TIGR00712 180 WFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLP-PIEEY-------RNDYP----------DD--Y--NE--KA-- 233 (438)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCC-Cchhc-------ccccc----------cc--c--cc--cc--
Confidence 13489999999887766544 4456678887532100 00000 00000 00 0 00 00
Q ss_pred CCCCCCccCcch-hhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhC-CCCCchhHHHHHHHHhHHHHH
Q 010317 263 GPPKGNFTGEGV-WKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGA-GIHRKPVLFGINVVMGLAKTF 340 (513)
Q Consensus 263 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 340 (513)
++ ..+.+.. ++..+ +++.++......+......+.+..|.|.++++. +.+.... ........+...+
T Consensus 234 --~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~-~~~~~~~~~~~~i 302 (438)
T TIGR00712 234 --EQ-ELTAKEIFMQYVL-------PNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKS-SWAYFLYEYAGIP 302 (438)
T ss_pred --cc-ccchHHHHHHHHc-------cCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhH-HHHHHHHHHHHHH
Confidence 00 0000001 11111 111122222222223333456667889988764 3333222 2234456667888
Q ss_pred HHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCCh
Q 010317 341 FVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPL 420 (513)
Q Consensus 341 ~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~ 420 (513)
+.++++++.||+++++....+........ .+............+.....+... .+...+..........|.+|+
T Consensus 303 g~~~~g~l~dr~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~ 376 (438)
T TIGR00712 303 GTLLCGWMSDKVFKGNRGATGVFFMTLVT--IAVIVYWMNPAGNPLVDMICMIVI----GFLIYGPVMLIGLHALELAPK 376 (438)
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHH--HHHHHHHhcCCCchHHHHHHHHHH----HHHHccHHHHHHHHHHHhcCh
Confidence 89999999999965432222221111111 111111111111112111111111 111112111112346799999
Q ss_pred hhHhhHHHHHHHHHHHHHH-HHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhheecccCCC
Q 010317 421 RLRAQGSALAISVNRLVSG-VISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKG 481 (513)
Q Consensus 421 ~~R~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 481 (513)
+.|+++.|+.+.++++++. +.+...+.+.+..++...+++..++.+++.+...+++||.|+
T Consensus 377 ~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (438)
T TIGR00712 377 KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 438 (438)
T ss_pred hheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999887654 456666777777777888888888788888888888888753
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=235.32 Aligned_cols=354 Identities=13% Similarity=0.059 Sum_probs=231.9
Q ss_pred ccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Q 010317 48 IGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGR 127 (513)
Q Consensus 48 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R 127 (513)
....++..|.+++++|+++++.++..+++.+++.+++++.|+++||+|||+++..+.++..++.+.++++++++.++++|
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY 98 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHH-HHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHH-
Q 010317 128 MIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSG-YVFNYALSGLPGNINWRIMLGLAAVPAAVIGVG- 205 (513)
Q Consensus 128 ~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~- 205 (513)
++.|++.+........++.|++| ++|+++.+.......+|..++ ++..... +..+||+.|++.++..++..+.
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~ 173 (377)
T TIGR00890 99 GLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVI----NLEGVPAAFIYMGIIFLLVIVLG 173 (377)
T ss_pred HHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHH----hcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999877777777888887 679999999888887776553 3433332 2458999999988877665544
Q ss_pred HhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChh
Q 010317 206 VLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPA 285 (513)
Q Consensus 206 ~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (513)
.++++|.|+-. .+ .+++.+++ ....++.+++ +.
T Consensus 174 ~~~~~~~~~~~---~~-------------~~~~~~~~-----------------------------~~~~~~~~~~--~~ 206 (377)
T TIGR00890 174 AFLIGYPPGQL---IK-------------TNIEVSVK-----------------------------DYTVWEMLRT--PQ 206 (377)
T ss_pred HHheecCchhc---cc-------------cCcccchh-----------------------------hhhHHHHHcC--cc
Confidence 34444443200 00 00000000 0001111111 11
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHH
Q 010317 286 VRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGM 365 (513)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~ 365 (513)
.+. .....+...........+.+.+.++.+.+.. ..........+...++.++.+++.||+|||+.+..+....
T Consensus 207 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~ 280 (377)
T TIGR00890 207 FWV-----LYLSFFLNAVSGLLLIGLYKPYGQSLGLSDG-FLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGIS 280 (377)
T ss_pred HHH-----HHHHHHHHhHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 111 1111111111122223344445555443322 2223445567788889999999999999999887765544
Q ss_pred HHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHH
Q 010317 366 VGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTF 445 (513)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~ 445 (513)
..+.+.+... ....... . ....... ........+....+.+|.+|++.|+++.|+.+...++++.+.+...
T Consensus 281 ~~~~~~~~~~-----~~~~~~~-~--~~~~~~~-g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 351 (377)
T TIGR00890 281 AVGMAAMLFI-----PMLNDVL-F--LATVALV-FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIA 351 (377)
T ss_pred HHHHHHHHHc-----ccchhHH-H--HHHHHHH-HHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHH
Confidence 4443333221 1111111 1 0111111 1111122234456788999999999999999999999888888777
Q ss_pred HHHHHhcccchhHHHHHHHHHHH
Q 010317 446 LSISHRLSFGGTFFLLAGITTVG 468 (513)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~ 468 (513)
..+.+..++...|++.+++.+++
T Consensus 352 g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 352 SHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHhhhchhhHHHHHHHHHHHh
Confidence 77777777777777777665554
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=236.70 Aligned_cols=370 Identities=12% Similarity=0.107 Sum_probs=236.0
Q ss_pred HHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcH
Q 010317 41 SILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNY 120 (513)
Q Consensus 41 ~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~ 120 (513)
++...+++..+++..|.+++++|.++.+.+++.+++.++..+++++.|+++||+|||+++.++.+++.++.++.++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 83 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSL 83 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhH
Confidence 45666788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHH-HHHHHhcCCCCCcchHHHHHhhhHHH
Q 010317 121 PFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGY-VFNYALSGLPGNINWRIMLGLAAVPA 199 (513)
Q Consensus 121 ~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~~Wr~~~~~~~~~~ 199 (513)
+.+++.|++.|++.+...+....++.|+.|+++|++..++.+....+|..+++ ++...+. ...+||+.|++.++..
T Consensus 84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 160 (379)
T TIGR00881 84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA---ELYSWHWVFIVPGIIA 160 (379)
T ss_pred HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHH---hcCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888888888877 3443332 2458999998877665
Q ss_pred HHHH-HHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhh
Q 010317 200 AVIG-VGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDL 278 (513)
Q Consensus 200 ~i~~-~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (513)
++.. +..++.||+|+... +.++. +.+.+ + .+ .. +++ .++.....+..++.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~---~~~~~--------~~~~~---~--------~~--~~--~~~--~~~~~~~~~~~~~~~ 212 (379)
T TIGR00881 161 IIVSLICFLLLRDSPQSCG---LPPAE--------EMPNE---E--------PD--GD--AEK--KEEELTKKQIFLQYV 212 (379)
T ss_pred HHHHHHHheeeCCCccccc---cCccc--------cCccc---c--------cc--cc--ccc--ccccccchHHHHHHH
Confidence 5543 34556777764210 00000 00000 0 00 00 000 000000011112222
Q ss_pred hcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhC-CCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCC-hh
Q 010317 279 ILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGA-GIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGR-RP 356 (513)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gr-r~ 356 (513)
++ ++.++......+...........+.|.++.+. +.+... .........+...++.++.+++.||..+ |+
T Consensus 213 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~ 284 (379)
T TIGR00881 213 LL-------NKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEK-ASWAFTLYELGGLVGTLLAGWLSDKLFNGRR 284 (379)
T ss_pred Hh-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHcchhHHHHHHHHHHHcCCcc
Confidence 22 11122222222223333345556777777543 433222 2224455667778889999999998643 33
Q ss_pred HHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHH
Q 010317 357 LLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRL 436 (513)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~ 436 (513)
..+. ..........+.. .. ............ . ....+.+..+..+..+.+.+|.+|++.|+++.|+.+.+.++
T Consensus 285 ~~~~-~~~~~~~~~~~~~-~~-~~~~~~~~~~~~---~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 357 (379)
T TIGR00881 285 GPLA-VFFMALIIVSLLV-YW-LNPAANPLMDLI---C-LFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYL 357 (379)
T ss_pred hHHH-HHHHHHHHHHHHH-Hh-cCcchhHHHHHH---H-HHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhh
Confidence 2221 1111111111111 11 111111111111 1 11112222233334456788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccch
Q 010317 437 VSGVISMTFLSISHRLSFGG 456 (513)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~ 456 (513)
++.+.+.....+.+..++..
T Consensus 358 g~~~~~~~~g~l~~~~g~~~ 377 (379)
T TIGR00881 358 GGILAGLPLGYLADGFGWAG 377 (379)
T ss_pred hhhhhhhhHHHHHHhhcccc
Confidence 88887777777777666544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=229.78 Aligned_cols=375 Identities=12% Similarity=0.135 Sum_probs=246.1
Q ss_pred HHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHH
Q 010317 32 ICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGA 111 (513)
Q Consensus 32 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~ 111 (513)
.++..+++..++++++....++..|.+++++|++.++.++..+.+.+++.+++++.|+++||+|||+++..+.++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~ 86 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAV 86 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34556677788889998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Q 010317 112 LAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIM 191 (513)
Q Consensus 112 ~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~ 191 (513)
.+.+++++++.+++.|++.|++.|...+....++.|++|+++|+...+..+....+|..+++.+...+. ....+||+.
T Consensus 87 ~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~~gw~~~ 164 (394)
T PRK03699 87 AGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLL--ARSIEWYWV 164 (394)
T ss_pred HHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccccHHHH
Confidence 999999999999999999999999888888889999999999999988877777777666555432221 123589999
Q ss_pred HHhhhHHHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccC
Q 010317 192 LGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTG 271 (513)
Q Consensus 192 ~~~~~~~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (513)
|.+.+++.++..+..++ .+.|+ .++ .++ ++ +++ ..
T Consensus 165 f~~~~~~~~~~~~~~~~-~~~p~-------~~~----------~~~-------------~~-------~~~--~~----- 199 (394)
T PRK03699 165 YACIGLVYVAIFILTLF-SEFPA-------LGK----------HAP-------------KA-------DKP--VA----- 199 (394)
T ss_pred HHHHHHHHHHHHHHHHh-cCCcc-------ccc----------cCc-------------cc-------cCc--cc-----
Confidence 99877776655443322 22221 000 000 00 000 00
Q ss_pred cchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHh-CCCCCchhHHHHHHHHhHHHHHHHHHHHHHhh
Q 010317 272 EGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKG-AGIHRKPVLFGINVVMGLAKTFFVVLSALHLD 350 (513)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 350 (513)
+..|+ +.+. ...+..++.....+.+..|.|.++++ .+.+..... ....+..++..++.++.+++.|
T Consensus 200 ~~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~d 266 (394)
T PRK03699 200 KEKWG-----------IGVL-FLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAG-NLVSNFWMAYMVGMWIFSFIVR 266 (394)
T ss_pred cccCC-----------hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 00010 1111 11122223333445566789988854 354433222 2334455677889999999999
Q ss_pred ccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHH
Q 010317 351 KFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALA 430 (513)
Q Consensus 351 ~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~ 430 (513)
|++||+.+............++.. .. ....... ..+.. +++..+..+....+..|..|.+ ++...|..
T Consensus 267 r~~~~~~l~~~~~~~~~~~~~~~~-----~~-~~~~~~~-~~~~~----G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~ 334 (394)
T PRK03699 267 FFDLQRILTVLAGLALVLMYLFVN-----TD-DPSHLLY-AILGL----GFFSSAIYTTIITLGSQQTKVA-SPKLVNFI 334 (394)
T ss_pred HhchhhHHHHHHHHHHHHHHHHHH-----cC-CchHHHH-HHHHH----HHHHHHHHHHHHHHHHHHccCC-CHHHHHHH
Confidence 999999877654333322222211 11 1111111 11111 1111122223334556666644 56778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhheecccC
Q 010317 431 ISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPET 479 (513)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 479 (513)
...+++++.+.+.....+.+..++...++..+++.+++.+.+ ...+++
T Consensus 335 ~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~ 382 (394)
T PRK03699 335 LTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC-ILLGFV 382 (394)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH-HHHHHH
Confidence 888888777888888888777777777777777766665443 344443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-26 Score=234.07 Aligned_cols=382 Identities=13% Similarity=0.048 Sum_probs=240.4
Q ss_pred HHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHH
Q 010317 31 FICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVG 110 (513)
Q Consensus 31 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~ 110 (513)
|......++..+...+|.++++.+.|.+.+|+|.+.++.+|+.+.+.+++.++++++|+++||+|||+++.++.+++.++
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~ 84 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLA 84 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44566777888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHHHhhhhcccccccccceeeccC-CCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchH
Q 010317 111 ALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEIS-PTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWR 189 (513)
Q Consensus 111 ~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr 189 (513)
++++++++|++.++++|+++|++.+...+.....+.+.+ |+++|+++.++......+|..+++.++..+. ...+||
T Consensus 85 ~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~---~~~gwr 161 (495)
T PRK14995 85 SLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL---EHFYWG 161 (495)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCChH
Confidence 999999999999999999999999887776666665654 7789999999999999999999988876654 356899
Q ss_pred HHHHhhhHHHHHHHH-HHhccCCCchhHHhcCCHHHHHHHHH------------HhcCChHHHHHHH----------HHH
Q 010317 190 IMLGLAAVPAAVIGV-GVLIMPESPRWLVMKSRYDEAKRVLL------------KVSDTEQEAKERL----------DDM 246 (513)
Q Consensus 190 ~~~~~~~~~~~i~~~-~~~~lpEsp~~l~~~~~~~~a~~~~~------------~~~~~~~~~~~~~----------~~~ 246 (513)
|.|++.....++..+ ..+++||.|.- .+++.|....... ...+......... ...
T Consensus 162 ~~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f 239 (495)
T PRK14995 162 SVFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLF 239 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Confidence 999987655544333 45667887531 1111111111000 0000000000000 000
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhC-CCCCch
Q 010317 247 IKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGA-GIHRKP 325 (513)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~ 325 (513)
...+.. . +......++++ ++.+.......+......+...++.|.+++.. +.+...
T Consensus 240 ~~~e~~------------~----~~p~~~~~lf~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ 296 (495)
T PRK14995 240 IRTQLA------------A----SRPMIDMRLFT-------HRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLE 296 (495)
T ss_pred HHHHhc------------C----CCCCcCHHHhC-------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 000000 0 00000011222 11222222222233333455567788887754 332222
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcc
Q 010317 326 VLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIG 405 (513)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (513)
.........+...++.++.+++.||+|+|+.+..+.....++.+.+... ......+......... .+....
T Consensus 297 -ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~----~~~~~~~~~~~~~~l~-G~g~g~--- 367 (495)
T PRK14995 297 -AGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT----DFSTQQWQAWGLMALL-GFSAAS--- 367 (495)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh----cCCCchHHHHHHHHHH-HHhHHH---
Confidence 2223344566778888999999999999998776654443333322211 1111111111111111 111111
Q ss_pred ccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010317 406 LGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSIS 449 (513)
Q Consensus 406 ~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 449 (513)
..+.......+..|++.++.+.++.+...++++.+.......+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~ 411 (495)
T PRK14995 368 ALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL 411 (495)
T ss_pred HHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122345567789999999999999888887666555544433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-26 Score=227.09 Aligned_cols=363 Identities=14% Similarity=0.109 Sum_probs=229.9
Q ss_pred HHHHhhcccccchhhHH-HHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhc--
Q 010317 41 SILLGYDIGVMSGAVLY-IKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLA-- 117 (513)
Q Consensus 41 ~~~~g~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~-- 117 (513)
.++..++.....+.+|. +++++|.++++.+++.+++.+++.+++++.|+++||+|||+++..+.+++.++++.++++
T Consensus 24 ~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~ 103 (399)
T PRK05122 24 TFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGL 103 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhh
Confidence 33344455556667774 788999999999999999999999999999999999999999999999998887766543
Q ss_pred -C-----cHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Q 010317 118 -P-----NYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIM 191 (513)
Q Consensus 118 -~-----~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~ 191 (513)
+ ++..+++.|+++|++.+...+....++.|+.|+++|+++.++.+.....|..+++.++..+. ...+||+.
T Consensus 104 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~---~~~g~~~~ 180 (399)
T PRK05122 104 LAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY---HWGGLAGL 180 (399)
T ss_pred hhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH---HcccHHHH
Confidence 2 56689999999999999988888888899999999999999988888888877777655443 24589998
Q ss_pred HHhhhHHHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccC
Q 010317 192 LGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTG 271 (513)
Q Consensus 192 ~~~~~~~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (513)
+++.++..++..+.....||++. + + .++ ..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~----~-~-------------~~~---~~----------------------------- 210 (399)
T PRK05122 181 GLLIMLLALLGLLLARPRPAVPP----V-K-------------GER---LP----------------------------- 210 (399)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCC----C-C-------------ccc---hh-----------------------------
Confidence 87766554433332222333221 0 0 000 00
Q ss_pred cchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhc
Q 010317 272 EGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDK 351 (513)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 351 (513)
+++.++ +..+...... ....+......+.|.++.+.+... ... .....+++..++.++.+++.||
T Consensus 211 ---~~~~~~---~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~g~l~~r 275 (399)
T PRK05122 211 ---FRRVLG---RVWPYGMGLA------LASIGFGTIATFITLYYAARGWDG--AAL-ALTLFGVAFVGARLLFGNLINR 275 (399)
T ss_pred ---HHHHHH---HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHccccc--chH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0000011110 111112233345566665544321 111 2234455667788899999999
Q ss_pred cCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHH
Q 010317 352 FGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAI 431 (513)
Q Consensus 352 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~ 431 (513)
++||+.+..+...+....+.+.. . .+.+......+.. ..... ...+.......|.+|++.|+++.|+.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~l~---G~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~ 344 (399)
T PRK05122 276 LGGLRVAIVSLLVEILGLLLLWL-----A--PSPWMALIGAALT---GFGFS-LVFPALGVEAVKRVPPQNRGAALGAYS 344 (399)
T ss_pred hccHHHHHHHHHHHHHHHHHHHH-----h--ccHHHHHHHHHHH---HHhHH-HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999877665444433333221 1 1111111111111 11111 111222334568889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhheecccCCCCC
Q 010317 432 SVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKT 483 (513)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 483 (513)
...+++..+.+.....+.+..++...+++.+++.+++.+.. +++++.++++
T Consensus 345 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 395 (399)
T PRK05122 345 VFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALT-WLLYRRAPRA 395 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHhccccccc
Confidence 98888777777777777776777778888777777765554 3455544433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=235.43 Aligned_cols=393 Identities=12% Similarity=0.060 Sum_probs=231.7
Q ss_pred HHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHH
Q 010317 30 AFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLV 109 (513)
Q Consensus 30 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i 109 (513)
.|.++...++.......+...++...|.+++++|.+.++.++..+.+.++..++.++.|+++||+|||++++.+.+++.+
T Consensus 17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 96 (455)
T TIGR00892 17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASL 96 (455)
T ss_pred chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHH
Confidence 34444555555555555667788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcHHHHHH-HHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcch
Q 010317 110 GALAMGLAPNYPFLIV-GRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINW 188 (513)
Q Consensus 110 ~~~~~~~~~~~~~l~~-~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~W 188 (513)
+.++++++++++.+++ .|++.|++.+...+....++.|++| ++|+++.++.+....+|..+++.+...+. ...+|
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~---~~~gw 172 (455)
T TIGR00892 97 GMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLF---ESFGW 172 (455)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHH---HHhCh
Confidence 9999999999988765 5799999998766666677788886 78999999988888888777765543332 24589
Q ss_pred HHHHHhhhHHHHHHHHHHhc-cCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-
Q 010317 189 RIMLGLAAVPAAVIGVGVLI-MPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPK- 266 (513)
Q Consensus 189 r~~~~~~~~~~~i~~~~~~~-lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 266 (513)
|+.|++.++..++..+..++ .|+.+.. .+.+. +.. +.. + ++...++.....
T Consensus 173 r~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~-~~~---~~~-------------------~--~~~~~~~~~~~~~ 225 (455)
T TIGR00892 173 RGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSKS-KSK---EGL-------------------P--PDGSTKKLSKKST 225 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccc--ccccc-ccc---ccC-------------------C--CCCccccccccch
Confidence 99999988776654443332 3322210 00000 000 000 0 000000000000
Q ss_pred CCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHH
Q 010317 267 GNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSA 346 (513)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (513)
.+...+....++++ ++.++......+....+.+....++|.++++.+.+...... ...+.+++..++.++.+
T Consensus 226 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~-~~~~~~~~~~~~~~~~g 297 (455)
T TIGR00892 226 AEKINRFLDFSLFT-------HRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAF-LLSIIGFVDIFARPSCG 297 (455)
T ss_pred hhhhhhhcchHHhc-------CchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 00000000001221 11111111222222223344455677777766554433222 33445667777888889
Q ss_pred HHhhcc--CChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHh
Q 010317 347 LHLDKF--GRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRA 424 (513)
Q Consensus 347 ~~~d~~--grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~ 424 (513)
++.||. ++|+....+......+...+ .... ..+.+..... .+..++......+..+....|.+|++.|+
T Consensus 298 ~l~d~~~~~~~~~~~~~~~~~~~~l~~l-l~~~----~~~~~~~~i~----~~~~G~~~g~~~~~~~~~~~~~~~~~~~g 368 (455)
T TIGR00892 298 LIAGLKWIRPHVQYLFSFALLFNGLTHL-LCAL----AGDYTGLVIY----CIFFGLSFGSVGALLFEVLMDLVGAQRFS 368 (455)
T ss_pred HHhcccccCHHHHHHHHHHHHHHHHHHH-HHHH----hchHHHHHHH----HHHHHHHhchHHHHHHHHHHHHhhHHHHh
Confidence 999973 33433322211111111111 1110 1111111111 11111111122234456677999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHH
Q 010317 425 QGSALAISVNRLVSGVISMTFLSISHRL-SFGGTFFLLAGITTVGTI 470 (513)
Q Consensus 425 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 470 (513)
++.|+.+...++++.+.+.....+.+.. ++...|++.+++.+++.+
T Consensus 369 ~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 369 SAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred hHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 9999999999887777776666555544 466677777766665544
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=222.50 Aligned_cols=394 Identities=12% Similarity=0.053 Sum_probs=241.0
Q ss_pred CCCcccccccCCCcCCCchHHHHHHHHHHHHHHHHhhcccccchhhHHHHh-hhCCCchhHHHHHHHHHHHHHHHHhhcc
Q 010317 10 DDHQNVEAGTGRQKKGLNKYAFICALLASINSILLGYDIGVMSGAVLYIKE-DLEITEVQVEVLVGILNVFSLIGSLASG 88 (513)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~s~~~~~~~~s~~~~g~~ig~~~~g 88 (513)
+.+|+++..|.+.-|...+.......+.+...+ ......++..+.+.+ |+|+|.+|.+++.+++.+++.++.++.|
T Consensus 15 ~w~pe~~~~w~~~~~~~a~r~l~~s~~~f~~~F---~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G 91 (462)
T PRK15034 15 DWKPENPAFWENKGKHIARRNLWISVSCLLLAF---CVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYS 91 (462)
T ss_pred CCCCCChHHHhhcCchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544433333333333333333333333 445566777777655 8999999999999999999999999999
Q ss_pred ccccccCchHHHHHHHHHHHHHHHHHHhc-----CcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhH
Q 010317 89 KTSDYIGRRYTIVVAAATFLVGALAMGLA-----PNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEV 163 (513)
Q Consensus 89 ~l~dr~GRr~~~~~~~~~~~i~~~~~~~~-----~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~ 163 (513)
+++||+|+|+++.++.+++++.++..+++ ++++.+++.|++.|++ |...+.....+++++|+++||++.++...
T Consensus 92 ~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g 170 (462)
T PRK15034 92 FMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGG 170 (462)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHH
Confidence 99999999999999999999999999987 8999999999999998 66777788889999999999999999865
Q ss_pred HHHHHHHHHHHHHHHh------cC---------CCCCcchHHHHHhhhHHHHHHHHHH-hccCCCchhHHhcCCHHHHHH
Q 010317 164 FIVLGILSGYVFNYAL------SG---------LPGNINWRIMLGLAAVPAAVIGVGV-LIMPESPRWLVMKSRYDEAKR 227 (513)
Q Consensus 164 ~~~~G~~~~~~~~~~~------~~---------~~~~~~Wr~~~~~~~~~~~i~~~~~-~~lpEsp~~l~~~~~~~~a~~ 227 (513)
..++|..++..+...+ .. ..+..+||...++..++.++..+.. +++++.|. .+.+
T Consensus 171 ~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~------ 241 (462)
T PRK15034 171 LGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRAS------ 241 (462)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccC------
Confidence 5555554433332211 10 0123468888777666665554443 33444321 0000
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchh
Q 010317 228 VLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDA 307 (513)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (513)
.++. .+.++ ++-.+.++..+++...++.+
T Consensus 242 ---------------~~~~-----------------------------~~vlk-------~~~~Wllslly~~tFG~fvg 270 (462)
T PRK15034 242 ---------------IADQ-----------------------------LPVLQ-------RLHLWLLSLLYLATFGSFIG 270 (462)
T ss_pred ---------------HHHH-----------------------------HHHhC-------CCchhHHHHHHHHHHHHHHH
Confidence 0000 00111 01111223334455556666
Q ss_pred hhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhH
Q 010317 308 VIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVV 387 (513)
Q Consensus 308 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (513)
+.+++|.++++.- .. ........+..+...+...++|+++||+|+|+++..+.+.+.++...+.... .........
T Consensus 271 ~s~~lp~~~~~~~-~~-~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~l--p~~~~~~~~ 346 (462)
T PRK15034 271 FSAGFAMLAKTQF-PD-VNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTL--PGTGSGNFI 346 (462)
T ss_pred HHHHHHHHHHHHc-Ch-HHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh--ccccccHHH
Confidence 7778888886532 11 1122223344566777888999999999999998877655444432222111 011111111
Q ss_pred HHHHHHHHHHHHHHHhccccceeeeeecccCCh---------------------hhHhhHHHHHHHHHHHHHHHHHHHHH
Q 010317 388 VVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPL---------------------RLRAQGSALAISVNRLVSGVISMTFL 446 (513)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~---------------------~~R~~~~g~~~~~~~~~~~~~~~~~~ 446 (513)
.. ...........+.+.+ ..+-.+++.||+ +.-+.+.|+...++-+++.+.+..+.
T Consensus 347 ~~--~~~~~~l~~~~G~gng-svfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g 423 (462)
T PRK15034 347 AF--YAVFMGLFLTAGLGSG-STFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFG 423 (462)
T ss_pred HH--HHHHHHHHHHhcccch-HHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHH
Confidence 11 1111111122233333 335566777774 13456677777777777777776666
Q ss_pred HHHHh-cccchhHHHHHHHHHHHHHhhhe
Q 010317 447 SISHR-LSFGGTFFLLAGITTVGTIFFYV 474 (513)
Q Consensus 447 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 474 (513)
...+. .++...|+++.+..++|.++.+.
T Consensus 424 ~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 424 MSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 65544 34556788887777777666543
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=232.22 Aligned_cols=302 Identities=21% Similarity=0.276 Sum_probs=223.6
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhhcccccchhhH-HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHH
Q 010317 23 KKGLNKYAFICALLASINSILLGYDIGVMSGAVL-YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIV 101 (513)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~ 101 (513)
++...|..+.+....++.++....|....+.+.. .+.+|.++...+++.+.++++++|++|+++++.+.||++-.+.+.
T Consensus 36 ~~l~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~ 115 (495)
T KOG2533|consen 36 RKLLRKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLS 115 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHH
Confidence 4444555666666778888888889877765543 477999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhc-
Q 010317 102 VAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALS- 180 (513)
Q Consensus 102 ~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~- 180 (513)
...++|++.++++....|++.+++.|++.|+..++.++....++.-|+.+++|+..++++.....+|.+++.++++.+.
T Consensus 116 ~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~ 195 (495)
T KOG2533|consen 116 VSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK 195 (495)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988887743
Q ss_pred --CCCCCcchHHHHHhhhHHHHHHHH-HHhccCCCch--hHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCC
Q 010317 181 --GLPGNINWRIMLGLAAVPAAVIGV-GVLIMPESPR--WLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSP 255 (513)
Q Consensus 181 --~~~~~~~Wr~~~~~~~~~~~i~~~-~~~~lpEsp~--~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (513)
+.....||||.|++.++..++..+ .++++|+.|. |+..+. | ++...+ +.++. +
T Consensus 196 ~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~-----------------e-k~~~~~---~~~~~-~ 253 (495)
T KOG2533|consen 196 LNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDE-----------------E-KELVVE---RLRES-P 253 (495)
T ss_pred hcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchH-----------------H-HHHHHH---HHHhc-c
Confidence 223456999999998888776665 5678999985 221111 0 000000 00000 0
Q ss_pred CCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHh
Q 010317 256 SGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMG 335 (513)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 335 (513)
....++ + ..++... +.++.+-++...+..++.....+++.+|+|.++++...-.......++....
T Consensus 254 ~~~~~~------~----~~~~~~~----~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~ 319 (495)
T KOG2533|consen 254 SGGIEN------K----FKWKGFK----EALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYD 319 (495)
T ss_pred CCCccc------c----cCHHHHH----HHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHH
Confidence 000000 0 0122111 2344555666666667777778889999999998722122233344677788
Q ss_pred HHHHHHHHHHHHHhhc----cCChhHHHh
Q 010317 336 LAKTFFVVLSALHLDK----FGRRPLLLL 360 (513)
Q Consensus 336 ~~~~~~~~~~~~~~d~----~grr~~~~~ 360 (513)
+++.++.+++++++|| ..+|...+.
T Consensus 320 ~~g~v~~i~ag~lsdr~~~~~~~~~~~~~ 348 (495)
T KOG2533|consen 320 VGGIVGLILAGYLSDRLKTIFARRLLFIV 348 (495)
T ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 8999999999999999 445544433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-26 Score=227.64 Aligned_cols=374 Identities=15% Similarity=0.111 Sum_probs=247.2
Q ss_pred ccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHh-----cCcHHH
Q 010317 48 IGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGL-----APNYPF 122 (513)
Q Consensus 48 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~-----~~~~~~ 122 (513)
.....+..|.+.++++.++.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++..++....+. .++++.
T Consensus 33 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (417)
T PRK10489 33 LGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLA 112 (417)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 345566778888889889999999999999999999999999999999999999988877776654432 567889
Q ss_pred HHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHH
Q 010317 123 LIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVI 202 (513)
Q Consensus 123 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~ 202 (513)
+++.|++.|++.+...+....++.|+.|+++|+++.++......+|..+++.++..+.. ..+|||.+++.++..++.
T Consensus 113 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~---~~~~~~~~~~~~~~~~~~ 189 (417)
T PRK10489 113 IYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA---AGGVAWNYGLAAAGTFIT 189 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH---HHhhHHHHHHHHHHHHHH
Confidence 99999999999887777777889999999999999999888888888888777654431 347999998877776666
Q ss_pred HHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCC
Q 010317 203 GVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKP 282 (513)
Q Consensus 203 ~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (513)
.+..+.+||+++.. +++ ++. .++..+ .++...+
T Consensus 190 ~~~~~~l~~~~~~~--~~~--------------~~~-~~~~~~----------------------------~~~~~~~-- 222 (417)
T PRK10489 190 LLPLLRLPALPPPP--QPR--------------EHP-LRSLLA----------------------------GFRFLLA-- 222 (417)
T ss_pred HHHHHhCCCCCCCC--ccc--------------ccc-hHHHHH----------------------------HHHHHHc--
Confidence 66666778765310 000 000 000000 0111111
Q ss_pred ChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHh-CCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhh
Q 010317 283 TPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKG-AGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLG 361 (513)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~ 361 (513)
.+..+...+... .... ......+.|.++++ .+.+.... ..+....+++..++.++.+++.||.++++.+..+
T Consensus 223 ~~~~~~~~~~~~-~~~~-----~~~~~~~~p~~~~~~~g~~~~~~-g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~ 295 (417)
T PRK10489 223 SPVVGGIALLGG-LLTM-----ASAVRVLYPALADEVWQMGAAQI-GLLYAAVPLGAALGALTSGWLAHSARPGLLMLLS 295 (417)
T ss_pred ChHHHHHHHHHH-HHHH-----HHhHHHhhHHHHHhccCCChhHh-HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHH
Confidence 111222111111 1111 12334567777776 44433222 2233456677788888999999997777766655
Q ss_pred hHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHH
Q 010317 362 SSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVI 441 (513)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~ 441 (513)
........++++. ....+..... ...+ ++......+..+.+..|..|++.|+++.|+.+...+++..+.
T Consensus 296 ~~~~~~~~~~~~~-------~~~~~~~~~~---~~~~-g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g 364 (417)
T PRK10489 296 TLGSFLAVGLFGL-------MPMWILAVLC---LALF-GYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIG 364 (417)
T ss_pred HHHHHHHHHHHHc-------cchHHHHHHH---HHHH-HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHH
Confidence 4433333322221 1111111111 1111 111111112345678899999999999999999999888888
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHhhheecccCCCCCHHHHHh
Q 010317 442 SMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEEMQA 489 (513)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~e~~~ 489 (513)
+...+.+.+..+....+++.+...++..++.....||+|++++||+++
T Consensus 365 ~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (417)
T PRK10489 365 AALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV 412 (417)
T ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 888888888777777777777776666666677789999998887543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-25 Score=227.78 Aligned_cols=383 Identities=18% Similarity=0.165 Sum_probs=241.8
Q ss_pred HHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHH
Q 010317 34 ALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALA 113 (513)
Q Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~ 113 (513)
.....+..+...+|.+..++..|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||+.+.++.++..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 83 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 34455677778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Q 010317 114 MGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLG 193 (513)
Q Consensus 114 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~ 193 (513)
+++++|++.+++.|+++|++.+...+....++.|++|+++|+++.++......+|..+++.++..+. ++.+||+.|+
T Consensus 84 ~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~---~~~~w~~~f~ 160 (485)
T TIGR00711 84 CGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII---ENYHWRWIFL 160 (485)
T ss_pred HhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc---cCcCceehhh
Confidence 9999999999999999999999998889999999999999999999998888888888877765443 3568999999
Q ss_pred hhhHHHHHHHH-HHhccCCCchhHHhcCCHHHHHHHHH------------HhcCChHHHH-HHHHHH-------H-HHHh
Q 010317 194 LAAVPAAVIGV-GVLIMPESPRWLVMKSRYDEAKRVLL------------KVSDTEQEAK-ERLDDM-------I-KAAK 251 (513)
Q Consensus 194 ~~~~~~~i~~~-~~~~lpEsp~~l~~~~~~~~a~~~~~------------~~~~~~~~~~-~~~~~~-------~-~~~~ 251 (513)
+.++..++..+ ..+++||+++ ..+++.|.....+. +..+.+.... ...... . ....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (485)
T TIGR00711 161 INVPIGIIVVVVAFFILPRDKP--AASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVW 238 (485)
T ss_pred hhhHHHHHHHHHHHHHcCCccc--cccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 87776655444 3455677543 11122222111100 0000000000 000000 0 0000
Q ss_pred hcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhC-CCCCchhHHHH
Q 010317 252 ESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGA-GIHRKPVLFGI 330 (513)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~ 330 (513)
+...+ ... ...++++. +..... ....+......+...++.|.++++. +.+... ....
T Consensus 239 ~~~~~----------~~~----~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~-~g~~ 296 (485)
T TIGR00711 239 ELTDD----------NPL----VDLRLFKY--RNFTIG-----CVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQ-AGLH 296 (485)
T ss_pred HHcCC----------CCc----cCHHHHcC--CChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHH
Confidence 00000 000 00112221 111111 1112222233445567788888753 333222 2223
Q ss_pred HHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcccccee
Q 010317 331 NVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPIT 410 (513)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (513)
.....++..++.++.+++.||+|||+.+..+......+..++.. ......+...............+... +..
T Consensus 297 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~g~g~~~~~----~~~ 369 (485)
T TIGR00711 297 ILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAF---TFTPDTPFLAIALPQFIRGFGMGCFF----MPL 369 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhc---cCCCCCCHHHHHHHHHHHHHHHHHHH----HHH
Confidence 44466778889999999999999999887765444433333221 11111111211111111111111111 111
Q ss_pred eeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010317 411 WVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISH 450 (513)
Q Consensus 411 ~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 450 (513)
.....|.+|++.|+++.|+.+.+.++++.+.+.....+.+
T Consensus 370 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 370 TTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344577899999999999999988877776665555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-25 Score=217.87 Aligned_cols=360 Identities=15% Similarity=0.141 Sum_probs=225.2
Q ss_pred HHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcC
Q 010317 39 INSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAP 118 (513)
Q Consensus 39 ~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~ 118 (513)
+..+..++.....++..|.+++|+|.+.++.++..+++.+++.+++++.|+++||+|||+++..+.++++++.+++++++
T Consensus 10 ~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~ 89 (382)
T PRK10091 10 LGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSS 89 (382)
T ss_pred HHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhC
Confidence 34445555666777788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHH
Q 010317 119 NYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVP 198 (513)
Q Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~ 198 (513)
|++.+++.|++.|++.|...+....++.|+.|+++|++..+.......+|..+++.++..+. +..+||+.|++.++.
T Consensus 90 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~---~~~gwr~~f~~~~~~ 166 (382)
T PRK10091 90 SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS---QEFSWRYTFLLIAVF 166 (382)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh---hhccHHHHHHHHHHH
Confidence 99999999999999999887777788899999999999999888777788777766654433 346899999998876
Q ss_pred HHHHHH-HHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhh
Q 010317 199 AAVIGV-GVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKD 277 (513)
Q Consensus 199 ~~i~~~-~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (513)
.++..+ ..+++||.++ +.+ .+.++.. +
T Consensus 167 ~~~~~~~~~~~lp~~~~----~~~---------------~~~~~~~--------------------------------~- 194 (382)
T PRK10091 167 NIAVLASIYFWVPDIRD----EAK---------------GGLREQF--------------------------------H- 194 (382)
T ss_pred HHHHHHHHHHhCCCCCc----ccc---------------cCHHHHH--------------------------------H-
Confidence 655444 3456777642 000 0000000 0
Q ss_pred hhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHh-CCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChh
Q 010317 278 LILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKG-AGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRP 356 (513)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~ 356 (513)
.+++ +.. .... ...+....+.+....|.+.++.+ .+.+... ........+++..++.++.+++.||+|+|+
T Consensus 195 ~~~~--~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~ 266 (382)
T PRK10091 195 FLRS--PAP--WLIF---AATMFGNAGVFAWFSYIKPYMMFISGFSETS-MTFIMMLVGLGMVLGNLLSGRLSGRYSPLR 266 (382)
T ss_pred HhcC--hHH--HHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHhHHHheeccccCchh
Confidence 0000 000 0010 01111111122222344444443 3433322 223445567788899999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHH
Q 010317 357 LLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRL 436 (513)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~ 436 (513)
.+..+.....+..+++.... .. .+........ .....+... .+.......+..|.+.++.+. .+...++
T Consensus 267 ~~~~~~~~~~i~~~~~~~~~-----~~-~~~~~~~~~~--~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 335 (382)
T PRK10091 267 IAAVTDFIIVLALLMLFFFG-----GM-KTASLIFAFI--CCAGLFALS-APLQILLLQNAKGGELLGAAG--GQIAFNL 335 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----hh-HHHHHHHHHH--HHHHHHhhh-HHHHHHHHHhCCcchHHHHHH--HHHHHHH
Confidence 88766544433332222111 11 1111111111 111111111 111122344555655555543 3555666
Q ss_pred HHHHHHHHHHHHHHh-cccchhHHHHHHHHHHHHHhh
Q 010317 437 VSGVISMTFLSISHR-LSFGGTFFLLAGITTVGTIFF 472 (513)
Q Consensus 437 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 472 (513)
++.+.+.....+.+. .++...+...++++++.....
T Consensus 336 g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 336 GSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred HHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence 666666666666664 456667766655555544333
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=217.55 Aligned_cols=177 Identities=18% Similarity=0.253 Sum_probs=152.5
Q ss_pred HHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHH
Q 010317 35 LLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAM 114 (513)
Q Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~ 114 (513)
....+..+...++...+.+.+|.+.++++.+.++.++..+++.++++++++++|+++||+|||+++..+.+++.++++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~ 98 (413)
T PRK15403 19 MALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAAT 98 (413)
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 34455566677788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHh
Q 010317 115 GLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGL 194 (513)
Q Consensus 115 ~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~ 194 (513)
++++|++.++++|+++|++.+...+....++.|++|+++|++.++.......+|..+++.++..+. +..+||+.|++
T Consensus 99 ~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~---~~~gw~~~f~~ 175 (413)
T PRK15403 99 LFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM---HFVHWKVLFAI 175 (413)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHH
Confidence 999999999999999999988766666778899999999999999888888888888887765544 24589999999
Q ss_pred hhHHHHHHHHH-HhccCCCch
Q 010317 195 AAVPAAVIGVG-VLIMPESPR 214 (513)
Q Consensus 195 ~~~~~~i~~~~-~~~lpEsp~ 214 (513)
.++..++..+. .+.+||+++
T Consensus 176 ~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 176 IAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHHHHHhCCCCcc
Confidence 88876665554 456888753
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-25 Score=219.98 Aligned_cols=359 Identities=18% Similarity=0.114 Sum_probs=226.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHH
Q 010317 28 KYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATF 107 (513)
Q Consensus 28 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~ 107 (513)
+..+...+...+..+...++.+.+.+..|.+.+++|.+..+.++..+.+.+++.+++++.|+++||+|||+++..+..+.
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 88 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF 88 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 34455566667777777888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcc
Q 010317 108 LVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNIN 187 (513)
Q Consensus 108 ~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 187 (513)
.++.+..+++++++.+++.|++.|++.+...+....++.|.+|+++|++..+.......+|..+++.+...+. +..+
T Consensus 89 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~---~~~~ 165 (406)
T PRK15402 89 ILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI---HVLP 165 (406)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccC
Confidence 9999999999999999999999999998877777888999999999998888877666677777766654443 2458
Q ss_pred hHHHHHhhhHHHHHHHHH-HhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 010317 188 WRIMLGLAAVPAAVIGVG-VLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPK 266 (513)
Q Consensus 188 Wr~~~~~~~~~~~i~~~~-~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (513)
||+.|++.++..++..+. .+.+||+++.. ++ + .+. .+.. +
T Consensus 166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~----------~~~---~~~~---~------------------ 206 (406)
T PRK15402 166 WRGMFVLFAALAALSFFGLWRAMPETAGRV---GE--K----------LSL---KELG---R------------------ 206 (406)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cc--c----------ccH---HHHH---H------------------
Confidence 999998877776554443 45578775320 00 0 000 0000 0
Q ss_pred CCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHh-CCCCCchhHHH-HHHHHhHHHHHHHHH
Q 010317 267 GNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKG-AGIHRKPVLFG-INVVMGLAKTFFVVL 344 (513)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~ 344 (513)
.++..+++ +.++.... ..+...........+.|.++.+ .+.+ +...+ .......+..++.++
T Consensus 207 -------~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~g~~--~~~~g~~~~~~~~~~~~g~~~ 270 (406)
T PRK15402 207 -------DYKLVLKN--RRFVAGAL-----ALGLVSLPLLAWIALSPVILISGEQLS--SYEYGLLQVPVFGALIAGNLT 270 (406)
T ss_pred -------HHHHHHcC--cHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHhCCC--HHHHHHHHHHHHHHHHHHHHH
Confidence 01111111 11111111 1111111122333445666543 3332 22222 223344566778889
Q ss_pred HHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHh
Q 010317 345 SALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRA 424 (513)
Q Consensus 345 ~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~ 424 (513)
.+++.||+++|+.+..+.+....+.++++..... . ............... +.. ... .+......... +++.|+
T Consensus 271 ~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~-~-~~~~~~~~~~~~~~g-~g~--~~~-~~~~~~~~~~~-~~~~~g 343 (406)
T PRK15402 271 LARLTSRRPLRSLIRMGLWPMVAGLLLAALATVI-S-SHAYLWLTAGLSLYA-FGI--GLA-NAGLYRLTLFS-SDVSKG 343 (406)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHc-c-cccHHHHHHHHHHHH-HHH--HHH-hhhHHHHHhhh-cccccc
Confidence 9999999999998877665544444444432211 1 111111111111111 111 110 11111122222 337899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010317 425 QGSALAISVNRLVSGVISMTFLSISHR 451 (513)
Q Consensus 425 ~~~g~~~~~~~~~~~~~~~~~~~~~~~ 451 (513)
+..+..+....++..+.+.....+.+.
T Consensus 344 ~~~~~~~~~~~~~~~~g~~~~~~l~~~ 370 (406)
T PRK15402 344 TVSAAMGMLSMLIFTVGIELSKHAYLG 370 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999888887766665555554443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-25 Score=218.25 Aligned_cols=340 Identities=18% Similarity=0.209 Sum_probs=224.5
Q ss_pred HHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHH
Q 010317 42 ILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYP 121 (513)
Q Consensus 42 ~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~ 121 (513)
+..+.....+.+..|.+++++|.++++.++..+++.++..+++++.|+++||+|||+++..+.++..++.+..+++++++
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 94 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIE 94 (385)
T ss_pred HHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHH
Confidence 44455667778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHH
Q 010317 122 FLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAV 201 (513)
Q Consensus 122 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i 201 (513)
.+++.|++.|++.+...+....++.|++|+++|++..+..+....+|..+++.+...+. ...+||+.+++.++..++
T Consensus 95 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~---~~~~~~~~~~~~~~~~~~ 171 (385)
T TIGR00710 95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL---VWLSWHAIFAFLSLAGIL 171 (385)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCHHHHHHHHHHHHHH
Confidence 99999999999999998888899999999999999999999888888888877655443 245899999887776555
Q ss_pred HHHH-HhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhc
Q 010317 202 IGVG-VLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLIL 280 (513)
Q Consensus 202 ~~~~-~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (513)
..+. .+..||+++.- .+ + ..++ ..++ +++..+
T Consensus 172 ~~~~~~~~~~~~~~~~---~~-~-----------~~~~---~~~~-----------------------------~~~~~~ 204 (385)
T TIGR00710 172 LSALIFFILPETLPYE---AR-I-----------QIST---YFET-----------------------------FLLLLK 204 (385)
T ss_pred HHHHHHHhCCCCCCCc---cc-C-----------CHHH---HHHH-----------------------------HHHHHc
Confidence 4443 45567765310 00 0 0000 0000 011111
Q ss_pred CCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHH-hCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHH
Q 010317 281 KPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFK-GAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLL 359 (513)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~ 359 (513)
. +..+...+. ........+....+.|.+++ ..+.+... .........+...++.++.+++.||+|||+.+.
T Consensus 205 ~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 276 (385)
T TIGR00710 205 S--KMFWGYALI-----YGASFGGFFAFFSGAPFVYIDIMGVSPSV-FGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLR 276 (385)
T ss_pred C--chhHHHHHH-----HHHHHHHHHHHHHcChHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 1 111111111 11111222334455676665 33433322 222344566778889999999999999999887
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHH
Q 010317 360 LGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSG 439 (513)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~ 439 (513)
.+......+.+++...... .............. .++......+....+..|.+| +.|+++.++.+...+.++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~ 349 (385)
T TIGR00710 277 MGLILFAVSAVLLEITAIL---GLGSWAMIIGPMMF---VGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGA 349 (385)
T ss_pred HHHHHHHHHHHHHHHHHHh---ccchHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHH
Confidence 6654444444333322110 11111111111111 111111112334556678888 5689999999988887777
Q ss_pred HHHHHHH
Q 010317 440 VISMTFL 446 (513)
Q Consensus 440 ~~~~~~~ 446 (513)
+.+....
T Consensus 350 i~~~~~~ 356 (385)
T TIGR00710 350 IVGYLVS 356 (385)
T ss_pred HHHHHHH
Confidence 7666655
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=217.69 Aligned_cols=349 Identities=16% Similarity=0.136 Sum_probs=222.9
Q ss_pred ccccchhhH-HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHH---h-----cC
Q 010317 48 IGVMSGAVL-YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMG---L-----AP 118 (513)
Q Consensus 48 ~~~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~---~-----~~ 118 (513)
.+...+.+| ++++|+|++.++.+++.+++.+++.++++++|+++||+|||+.+..+.++..++.+... + .+
T Consensus 31 ~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (392)
T PRK12382 31 VGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPF 110 (392)
T ss_pred HHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhH
Confidence 344455666 47899999999999999999999999999999999999999999999888777654332 2 25
Q ss_pred cHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHH
Q 010317 119 NYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVP 198 (513)
Q Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~ 198 (513)
+++.+++.|+++|++.+...+....++.|+.|+++|+++++..+.....|..+++.++..+. ...+||+.+.+..+.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~---~~~g~~~~~~~~~~~ 187 (392)
T PRK12382 111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH---SHFGFAALALTTMVL 187 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH---hccChHHHHHHHHHH
Confidence 78899999999999999887777788899999999999999988888888888877765443 245899877665444
Q ss_pred HHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhh
Q 010317 199 AAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDL 278 (513)
Q Consensus 199 ~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (513)
.++........||.+. + +. .+. ..++.
T Consensus 188 ~~~~~~~~~~~~~~~~------~--~~---------~~~------------------------------------~~~~~ 214 (392)
T PRK12382 188 PLLAWAFNGTVRKVPA------H--AG---------ERP------------------------------------SLWSV 214 (392)
T ss_pred HHHHHHHHHhccCCCC------C--cc---------cCc------------------------------------hHHHH
Confidence 3333222222233211 0 00 000 00000
Q ss_pred hcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHH
Q 010317 279 ILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLL 358 (513)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~ 358 (513)
.+ ...+..... +....+......+.|.++++.+... ... .....+++..++.++.+++.||+|||+.+
T Consensus 215 ~~---~~~~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~g~l~~r~g~~~~~ 282 (392)
T PRK12382 215 VG---LIWKPGLGL------ALQGVGFAVIGTFVSLYFASKGWAM--AGF-TLTAFGGAFVLMRVLFGWMPDRFGGVKVA 282 (392)
T ss_pred HH---HHHHhHHHH------HHHHHHHhHHHHHHHHHHHhcCCch--hHH-HHHHHHHHHHHHHHHHHHHHHhcCCCeeh
Confidence 00 000111111 1111122233445666666544322 111 22334556677888999999999999888
Q ss_pred HhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHH
Q 010317 359 LLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVS 438 (513)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~ 438 (513)
..+........+++.. . .+.+..... ......... ...+.......|.+|++.|+++.|+.++..++++
T Consensus 283 ~~~~~~~~~~~~~~~~-----~--~~~~~~~~~---~~l~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 351 (392)
T PRK12382 283 IVSLLVETVGLLLLWL-----A--PTAWVALAG---AALTGAGCS-LIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAY 351 (392)
T ss_pred HHHHHHHHHHHHHHHH-----c--ccHHHHHHH---HHHHHHHHH-hHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 7665444443333221 1 111111111 111111111 1112233456788999999999999999999888
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhee
Q 010317 439 GVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVF 475 (513)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (513)
.+.+.....+.+..++...+.+.+++.+++.+...+.
T Consensus 352 ~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 352 GVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 7888777777787788888888888777776655443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=212.73 Aligned_cols=342 Identities=24% Similarity=0.357 Sum_probs=255.7
Q ss_pred HHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhc
Q 010317 38 SINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLA 117 (513)
Q Consensus 38 ~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~ 117 (513)
.+..+.++++....++..|.+.+++|.++.+.++..+...++..+++++.|+++||+|||+.+.++.++..++.....+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~ 84 (352)
T cd06174 5 FLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA 84 (352)
T ss_pred HHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh
Confidence 34455666777788888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhH
Q 010317 118 PNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAV 197 (513)
Q Consensus 118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~ 197 (513)
++++.+++.|++.|++.+...+....++.|+.|+++|++..+.......+|..+++.+...+.. ..+||+.+++.++
T Consensus 85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~ 161 (352)
T cd06174 85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE---SLGWRWLFLILAI 161 (352)
T ss_pred ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888877665542 3469999988887
Q ss_pred HHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhh
Q 010317 198 PAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKD 277 (513)
Q Consensus 198 ~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (513)
..++..+...+++ |+
T Consensus 162 ~~~~~~~~~~~~~--~~--------------------------------------------------------------- 176 (352)
T cd06174 162 LGLLLALLLLFLL--RL--------------------------------------------------------------- 176 (352)
T ss_pred HHHHHHHHHHHHH--HH---------------------------------------------------------------
Confidence 7666555433222 00
Q ss_pred hhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhC-CCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChh
Q 010317 278 LILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGA-GIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRP 356 (513)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~ 356 (513)
+.......+...........+.|.+.++. +.+ ............++..++.++.+++.||+|||+
T Consensus 177 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 242 (352)
T cd06174 177 -------------LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLS-AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR 242 (352)
T ss_pred -------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 00011111223333445556777777654 322 222333555677788899999999999999999
Q ss_pred -HHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHH
Q 010317 357 -LLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNR 435 (513)
Q Consensus 357 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~ 435 (513)
.+..+.....++.+..... .+.+... ..............+....+.+|..|++.|++..|+.+...+
T Consensus 243 ~~~~~~~~~~~i~~~~~~~~-------~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (352)
T cd06174 243 LLLLIGLLLAALGLLLLALA-------PSLALLL----VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGS 311 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------ccHHHHH----HHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 7777665555444443321 1111111 111122233333345667888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhh
Q 010317 436 LVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFF 472 (513)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (513)
+++.+.+.....+.+..++...+++.+++.+++.+..
T Consensus 312 ~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 312 LGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 9888888887777777778888888888887776654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-25 Score=220.52 Aligned_cols=353 Identities=19% Similarity=0.241 Sum_probs=219.5
Q ss_pred HHHhhcccccchhhHHHHhhhC--CCchhHHHHHHH-----HHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHH
Q 010317 42 ILLGYDIGVMSGAVLYIKEDLE--ITEVQVEVLVGI-----LNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAM 114 (513)
Q Consensus 42 ~~~g~~~~~~~~~~~~~~~~~~--~s~~~~~~~~s~-----~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~ 114 (513)
..+++|+..++...+.+.++.. .++++.+...+. .+++..+++++.|+++||+|||+++..+.++..++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4577888888888887777654 455665554433 333445799999999999999999999999999999999
Q ss_pred HhcCcHH--------HHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCC----
Q 010317 115 GLAPNYP--------FLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGL---- 182 (513)
Q Consensus 115 ~~~~~~~--------~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~---- 182 (513)
++++++. .+++.|+++|++.+...+....++.|+.|+++|++..+..+....+|.++++.+...+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9999876 4889999999999999999999999999999999999999888888888887765443211
Q ss_pred -CCCcchHHHHHhhhHHHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCC
Q 010317 183 -PGNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDD 261 (513)
Q Consensus 183 -~~~~~Wr~~~~~~~~~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (513)
....+||+.|++.++..++.......+||+|++...+++ + +..
T Consensus 163 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~--~~~---- 206 (394)
T TIGR00883 163 ALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK------------------------------H--KKK---- 206 (394)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc------------------------------c--ccc----
Confidence 134689999988777666555555566777642110000 0 000
Q ss_pred CCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHh-CCCCCchhHHHHHHHHhHHHHH
Q 010317 262 QGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKG-AGIHRKPVLFGINVVMGLAKTF 340 (513)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 340 (513)
...+++.++++. +..... ....+......+....+.|.++++ .+.+... .........+...+
T Consensus 207 ----------~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~ 270 (394)
T TIGR00883 207 ----------RGPIRETLTKHR----KPFLLG-LGLVIATTTTFYLITTYLPTYLTQTLGLSANS-ALLVLMLSLILFFI 270 (394)
T ss_pred ----------cCCHHHHHHhch----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH-HHHHHHHHHHHHHH
Confidence 001122222111 111111 112222333344555677887743 3433322 22234456667788
Q ss_pred HHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCCh
Q 010317 341 FVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPL 420 (513)
Q Consensus 341 ~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~ 420 (513)
+.++.+++.||+|||+.+..+...+....+...... ....+.+......... .++.....+..+.+.+|.+|+
T Consensus 271 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~p~ 343 (394)
T TIGR00883 271 TIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMAL---LDSGSFTLFFFLVLGL----ALIGGMYTGPMGSFLPELFPT 343 (394)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH---hcCCchHHHHHHHHHH----HHHHHHHhhhHHHHHHHhCCc
Confidence 888999999999999977654333322221111111 1111112111111111 111111223456788999999
Q ss_pred hhHhhHHHHHHHHHH-HHHHHHHHHHHHHHHhcc
Q 010317 421 RLRAQGSALAISVNR-LVSGVISMTFLSISHRLS 453 (513)
Q Consensus 421 ~~R~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~ 453 (513)
+.|+++.++...+++ +++.+.+.....+.+..+
T Consensus 344 ~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 344 EVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred cceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 999999998665655 444455666666666555
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-26 Score=218.33 Aligned_cols=181 Identities=20% Similarity=0.284 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHH
Q 010317 31 FICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVG 110 (513)
Q Consensus 31 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~ 110 (513)
+....+.++..+++..|+..+.-..+.++..+|+++++.|++.+.+.+.++++++++|.++|||-||+++.++..+|+++
T Consensus 32 ~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~A 111 (493)
T KOG1330|consen 32 TLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLA 111 (493)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHH
Confidence 44556667778889999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHH
Q 010317 111 ALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRI 190 (513)
Q Consensus 111 ~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~ 190 (513)
.++++++..|++++++|.+.|+|++...++.+..++|.+|.++|+++.++++....+|..+|++.+..+.... ..|||
T Consensus 112 v~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~--~~Wr~ 189 (493)
T KOG1330|consen 112 VFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT--FWWRW 189 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc--cceEE
Confidence 9999999999999999999999999999999999999999999999999999998888888777665554332 23999
Q ss_pred HHHhhhHHHHHHHHH-HhccCCCc
Q 010317 191 MLGLAAVPAAVIGVG-VLIMPESP 213 (513)
Q Consensus 191 ~~~~~~~~~~i~~~~-~~~lpEsp 213 (513)
.|+..++.+++..+. +++.+|..
T Consensus 190 af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 190 AFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred EEEeehHHHHHHHHHHHhhccCcc
Confidence 999999988776664 55666665
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=210.68 Aligned_cols=158 Identities=20% Similarity=0.274 Sum_probs=138.6
Q ss_pred hhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 010317 53 GAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGI 132 (513)
Q Consensus 53 ~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~ 132 (513)
...|.+.+|+|.++++.++..+++.++..+++++.|+++||+|||+++..+.++.+++.+.++++++++.+++.|++.|+
T Consensus 41 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 120 (394)
T PRK10213 41 SLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGL 120 (394)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHH-HhccCC
Q 010317 133 GVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVG-VLIMPE 211 (513)
Q Consensus 133 ~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~-~~~lpE 211 (513)
+.|...+....++.|++|+++|+++.+.......+|..+++.++..+. ...+||+.|++.++..++..+. ...+||
T Consensus 121 ~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~---~~~gw~~~f~~~~~l~~~~~l~~~~~~p~ 197 (394)
T PRK10213 121 ALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG---ELIGWRNVFNAAAVMGVLCIFWIIKSLPS 197 (394)
T ss_pred hhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999998899999999999999999999998888899888888776554 3468999999877665544333 234676
Q ss_pred Cc
Q 010317 212 SP 213 (513)
Q Consensus 212 sp 213 (513)
+|
T Consensus 198 ~~ 199 (394)
T PRK10213 198 LP 199 (394)
T ss_pred CC
Confidence 54
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-24 Score=216.80 Aligned_cols=376 Identities=15% Similarity=0.166 Sum_probs=229.6
Q ss_pred HHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHH
Q 010317 36 LASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMG 115 (513)
Q Consensus 36 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~ 115 (513)
+..+..+..+++...+++..|.+.+|+|.+..+.+++.+.+.++..++.+++|+++||+|||+++..+.++++++.+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 93 (471)
T PRK10504 14 IVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCA 93 (471)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence 33455667778888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhh
Q 010317 116 LAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLA 195 (513)
Q Consensus 116 ~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~ 195 (513)
++++++.+++.|+++|++.+...+....++.|.+|+++|+...+.......+|..+++.+...+. +..+||+.|++.
T Consensus 94 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~---~~~gw~~~f~~~ 170 (471)
T PRK10504 94 LSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV---EYASWHWIFLIN 170 (471)
T ss_pred HhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---hhccHHHHHHHH
Confidence 99999999999999999999988888889999999999999999988888888888877765443 245899999887
Q ss_pred hHHHHHHHHH-HhccCCCchhHHhcCCHHHHHHHHHHh---------cCChHH--HHHHHH--------HHHH-HHhhcC
Q 010317 196 AVPAAVIGVG-VLIMPESPRWLVMKSRYDEAKRVLLKV---------SDTEQE--AKERLD--------DMIK-AAKESS 254 (513)
Q Consensus 196 ~~~~~i~~~~-~~~lpEsp~~l~~~~~~~~a~~~~~~~---------~~~~~~--~~~~~~--------~~~~-~~~~~~ 254 (513)
.....+..+. ....|+.+. .+.|.|.+....... .+.+.. ...... .... ..++..
T Consensus 171 ~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (471)
T PRK10504 171 IPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARN 247 (471)
T ss_pred HHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6655444443 344455431 122223222111000 000000 000000 0000 000000
Q ss_pred CCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHh-CCCCCchhHHH-HHH
Q 010317 255 PSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKG-AGIHRKPVLFG-INV 332 (513)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~-~~~ 332 (513)
.. + ..... ++++ .+.++... ...+....+.....++.|.+++. .+.+ ....+ ...
T Consensus 248 ~~----~---------~~~~~-~l~~--~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~g~~~~ 304 (471)
T PRK10504 248 NN----R---------ALFSL-KLFR--TRTFSLGL-----AGSFAGRIGSGMLPFMTPVFLQIGLGFS--PFHAGLMMI 304 (471)
T ss_pred CC----C---------CccCH-HHhc--ccchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHH
Confidence 00 0 00001 1222 11222211 11122222233445567777764 3322 22222 223
Q ss_pred HHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeee
Q 010317 333 VMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWV 412 (513)
Q Consensus 333 ~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (513)
...+...++..+.+++.||+|||+.+..+........+++... ....+.+................ .+....
T Consensus 305 ~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~ 376 (471)
T PRK10504 305 PMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLV----ALLGWYYLLPFVLFLQGMVNSTR----FSSMNT 376 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhc----cccccHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 3445556666889999999999999877655444333322211 11111111111111111111111 112345
Q ss_pred eecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010317 413 YSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSI 448 (513)
Q Consensus 413 ~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~ 448 (513)
...+.+|.+.|+.+.|+.+...+++.++.+.....+
T Consensus 377 ~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l 412 (471)
T PRK10504 377 LTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL 412 (471)
T ss_pred HHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 566888999999999999888888766655554444
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-24 Score=213.03 Aligned_cols=347 Identities=13% Similarity=0.020 Sum_probs=226.7
Q ss_pred HHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcC--
Q 010317 41 SILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAP-- 118 (513)
Q Consensus 41 ~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~-- 118 (513)
.++..+......+.+|.+..+++.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++..++..+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 87 (365)
T TIGR00900 8 QLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL 87 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344445556667788888889999999999999999999999999999999999999999999999999888888777
Q ss_pred ---cHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhh
Q 010317 119 ---NYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLA 195 (513)
Q Consensus 119 ---~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~ 195 (513)
+++.+++.|++.|++.+...+....++.|+.|+++|++..+..+....+|.++++.++..+. ...+||+.|++.
T Consensus 88 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~---~~~g~~~~~~~~ 164 (365)
T TIGR00900 88 GGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY---ATLGIKWAIWVD 164 (365)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHH
Confidence 99999999999999999998888999999999999999999999999999988887765543 245899999887
Q ss_pred hHHHHHHHHHHhc--cCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcc
Q 010317 196 AVPAAVIGVGVLI--MPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEG 273 (513)
Q Consensus 196 ~~~~~i~~~~~~~--lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (513)
++..++..+..+. .||.++- ++ ++ .+++ ..++..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~----~~-~~----------~~~~---~~~~~~~------------------------- 201 (365)
T TIGR00900 165 AVGFAISALLIVSVRIPELAAS----EI-QA----------LSNA---VLRDTRE------------------------- 201 (365)
T ss_pred HHHHHHHHHHHHhcccccCCCc----cc-cc----------cchh---HHHHHHh-------------------------
Confidence 7766554443332 2333210 00 00 0000 0000000
Q ss_pred hhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhh-ccHHHHHHh-CCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhc
Q 010317 274 VWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVI-YYTPAVFKG-AGIHRKPVLFGINVVMGLAKTFFVVLSALHLDK 351 (513)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 351 (513)
.++.+.+. +..+....... .......... .+.|.+.++ .+.+.. .........+++..++.++.+++.||
T Consensus 202 ~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (365)
T TIGR00900 202 GIKFVLKN--PLLRTLLLLAL-----LFNLVFAPAIVALFPYVQSKYLGRGST-HYGWVLAAFGLGALLGALLLGLLGRY 273 (365)
T ss_pred HHHHHHcC--cHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHhCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111 11221111111 1111112222 456666654 333322 22234445667778888899999999
Q ss_pred cCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHH
Q 010317 352 FGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAI 431 (513)
Q Consensus 352 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~ 431 (513)
.+||+.+..+...+..+.+.+... .. +.+......+. . ++......+....+..|.+|++.|+++.|+.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~---~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 343 (365)
T TIGR00900 274 FKRMALMTGAIFVIGLAILVVGLT-----PP-NFPLFLVLWFA---I-GVGYGPINVPQGTLLQRRVPAELLGRVFGAQF 343 (365)
T ss_pred hchhHHHHHHHHHHHHHHHHHHhh-----ch-hHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999998776544433333332221 11 11111111111 1 11111222345667889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 010317 432 SVNRLVSGVISMTFLSISHR 451 (513)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~ 451 (513)
.+.++++.+.+.....+.+.
T Consensus 344 ~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 344 SLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99998777777666665553
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-24 Score=210.08 Aligned_cols=363 Identities=16% Similarity=0.186 Sum_probs=222.5
Q ss_pred HHHHhhcccccchhhH-HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHH-HHHHHHHHHHHHHhcC
Q 010317 41 SILLGYDIGVMSGAVL-YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVV-AAATFLVGALAMGLAP 118 (513)
Q Consensus 41 ~~~~g~~~~~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~-~~~~~~i~~~~~~~~~ 118 (513)
+++.++..+...+.+| ++++++|.++++.+++.+++.++..+.+++.|.++||+|||+.++. +..+..++.+++++++
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 85 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNR 85 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcc
Confidence 4445555566667666 4788999999999999999999999999999999999999887654 5666667788889999
Q ss_pred cHHHHHHHHHHhhhhcccccccccceeeccCCCcccccc--cchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhh
Q 010317 119 NYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFL--TSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAA 196 (513)
Q Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~--~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~ 196 (513)
+++.+++.|++.|.+.+...+....+..|+.|++.|+.. .+.......+|..+++.++..+. +..+||+.|++.+
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~---~~~~~~~~f~~~~ 162 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLA---LGFGFTVMFLTAA 162 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHH---HhcccHHHHHHHH
Confidence 999999999999888777777666777888887777643 45555566777777776655443 2458999999988
Q ss_pred HHHHHHHHH-HhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchh
Q 010317 197 VPAAVIGVG-VLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVW 275 (513)
Q Consensus 197 ~~~~i~~~~-~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (513)
++.++..+. .+++||+|++... + .+. .+ .
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~-----~----------~~~---~~--------------------------------~ 192 (375)
T TIGR00899 163 LAFVLCGVLVWLFLPSYPRGAPG-----A----------LTR---LE--------------------------------V 192 (375)
T ss_pred HHHHHHHHHHHHhCCCcccCccc-----c----------cCc---ch--------------------------------h
Confidence 776655444 4558887742100 0 000 00 0
Q ss_pred hhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHH-hCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCC
Q 010317 276 KDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFK-GAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGR 354 (513)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gr 354 (513)
++..+ .+..+...... ...+. .......+.|.++. ..+.+...... ..........++.++.+++.||+||
T Consensus 193 ~~~~~--~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~-~~~~~~~~~~~~~~~~g~l~~r~g~ 264 (375)
T TIGR00899 193 RGLLA--SRDTRLLFVAC-TLMWG----CNILYIINMPLLIIHELGLPDKLAGL-MMGTAAGLEIPFMLLAGYLIKRFGK 264 (375)
T ss_pred hhhhc--CcchHHHHHHH-HHHHH----HHHHHHhhhHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 00000 01111111111 11111 11222344566553 33433322211 2223334556677889999999999
Q ss_pred hhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHH
Q 010317 355 RPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVN 434 (513)
Q Consensus 355 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~ 434 (513)
|+.+..+..........+.. . .+.+.......... +......+....+.+|..|++ |+++.++.+...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~g----~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 332 (375)
T TIGR00899 265 RRLMLLAALAGVAFYTGLAA-----D--NSLWALLMLQLLNA----IFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTG 332 (375)
T ss_pred hhHHHHHHHHHHHHHHHHHH-----H--HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHH
Confidence 99877654332222111111 0 11111111111111 111111233456778998876 569999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhheecc
Q 010317 435 RLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLP 477 (513)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 477 (513)
+++..+.+.....+.+..++...+++.+++.+++.+.. .+++
T Consensus 333 ~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~ 374 (375)
T TIGR00899 333 RVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL-LLIK 374 (375)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-heec
Confidence 98777777777777777777778888777777665554 4444
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=210.59 Aligned_cols=161 Identities=19% Similarity=0.278 Sum_probs=139.2
Q ss_pred ccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 010317 50 VMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMI 129 (513)
Q Consensus 50 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l 129 (513)
.+.+..|.+.+++|.++.+.++..+.+.++..+++++.|+++||+|||+.+..+.++..++.....++++++.+++.|++
T Consensus 21 ~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 100 (392)
T PRK10473 21 MYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFL 100 (392)
T ss_pred HHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHH-HHhc
Q 010317 130 AGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGV-GVLI 208 (513)
Q Consensus 130 ~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~-~~~~ 208 (513)
.|++.+...+....++.|.+|+++|++..+..+....+|..+++.++..+. ...+||+.+++.++..++..+ ..+.
T Consensus 101 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~---~~~g~~~~~~~~~~~~~i~~~~~~~~ 177 (392)
T PRK10473 101 QGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM---LKFPWQSLFYTMAAMGILVLLLSLFI 177 (392)
T ss_pred HHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888889999999999999999988888888777777665443 245899999887776655444 3456
Q ss_pred cCCCc
Q 010317 209 MPESP 213 (513)
Q Consensus 209 lpEsp 213 (513)
+||++
T Consensus 178 ~~~~~ 182 (392)
T PRK10473 178 LKETR 182 (392)
T ss_pred cCCCC
Confidence 77764
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-24 Score=211.17 Aligned_cols=162 Identities=19% Similarity=0.246 Sum_probs=141.0
Q ss_pred cccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 010317 49 GVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRM 128 (513)
Q Consensus 49 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~ 128 (513)
..+.+..|.+.+++|+++++.++..+++.++..++++++|+++||+|||+++..+.++..++...+.++++++.+++.|+
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 87 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRF 87 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 44567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHH-HHh
Q 010317 129 IAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGV-GVL 207 (513)
Q Consensus 129 l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~-~~~ 207 (513)
+.|++.+...+....++.|++|+++|++..++.+....+|..+++.+...+. ...+||+.|++.++..++..+ ..+
T Consensus 88 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (377)
T PRK11102 88 LHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL---VWFSWHAIFWVLALAAILAAALVFF 164 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888889999999999999999998888888888877655443 245899999887776655444 345
Q ss_pred ccCCCc
Q 010317 208 IMPESP 213 (513)
Q Consensus 208 ~lpEsp 213 (513)
.+||++
T Consensus 165 ~~~~~~ 170 (377)
T PRK11102 165 FIPETL 170 (377)
T ss_pred hCCccC
Confidence 677764
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-23 Score=205.48 Aligned_cols=337 Identities=15% Similarity=0.134 Sum_probs=211.7
Q ss_pred hcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Q 010317 46 YDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIV 125 (513)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 125 (513)
+....+.+..|.+++++|.++++.++..+++.+++.++++++|+++||+|||+++..+..+..++..+++++++++.+++
T Consensus 20 ~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (401)
T PRK11043 20 LATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLV 99 (401)
T ss_pred HHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 34556677888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHH
Q 010317 126 GRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVG 205 (513)
Q Consensus 126 ~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~ 205 (513)
.|++.|++.+...+....++.|++|+++|++..+.......+|..+++.+...+. +..+||+.|++.++..++..+.
T Consensus 100 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~---~~~g~~~~~~~~~~~~~~~~~~ 176 (401)
T PRK11043 100 LRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL---NHFGWQAIFATLFAITLLLILP 176 (401)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCChHHHHHHHHHHHHHHHHH
Confidence 9999999988777666778899999998888777766666667666666554433 2458999999887777666555
Q ss_pred HhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChh
Q 010317 206 VLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPA 285 (513)
Q Consensus 206 ~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (513)
.++++|+++- ++ + ++.+. .+++.++. +.
T Consensus 177 ~~~~~~~~~~----~~-~-------------~~~~~--------------------------------~~~~~~~~--~~ 204 (401)
T PRK11043 177 TLRLKPSKKA----RK-Q-------------SQDAL--------------------------------TFKQLLKS--KT 204 (401)
T ss_pred HHHcCCCCCc----cc-c-------------chHHH--------------------------------HHHHHHcC--hh
Confidence 5555655420 00 0 00000 01111111 11
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHH
Q 010317 286 VRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGM 365 (513)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~ 365 (513)
++...+... ...........+.|.++++.+.+...... ......++..++.++.+++.||+++|+........+
T Consensus 205 ~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~~g~s~~~~g~-~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~ 278 (401)
T PRK11043 205 YLGNVLIFA-----ACSAAFFAWLTGSPFILEQMGYSPADIGL-SYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLF 278 (401)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHhHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 111111110 11111233345677777765543322211 223345566778888899999999988765444333
Q ss_pred HHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHH
Q 010317 366 VGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTF 445 (513)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~ 445 (513)
..+.+.+...... . ....+......... ........+....+..|..|. .|+++.|+.++++...+...+...
T Consensus 279 ~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~~~~~~~~~~ 351 (401)
T PRK11043 279 AVSVIAIWLASLL-S-HPSLVPLLIPFCVM----AAANGAIYPIVVAQALRPFPQ-ATGKAAALQNTLQLGLCFLASLLV 351 (401)
T ss_pred HHHHHHHHHHHHh-c-cCcHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhCcc-cChHHHHHHHHHHHHHHHHHHHHH
Confidence 3332222111111 1 11111111111111 111111122333344566674 699999999998887777666666
Q ss_pred HHHHH
Q 010317 446 LSISH 450 (513)
Q Consensus 446 ~~~~~ 450 (513)
..+.+
T Consensus 352 g~l~~ 356 (401)
T PRK11043 352 SALIS 356 (401)
T ss_pred HHccC
Confidence 55544
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=212.85 Aligned_cols=346 Identities=23% Similarity=0.295 Sum_probs=223.3
Q ss_pred HHHHHHhhcccccchhhH-HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhc
Q 010317 39 INSILLGYDIGVMSGAVL-YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLA 117 (513)
Q Consensus 39 ~~~~~~g~~~~~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~ 117 (513)
+..++.+++...+++..| .+.+++|.++++.+++.+++.++..+++++.|+++||+|||+++.++.++..++..+..++
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 82 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence 344555666677788888 8999999999999999999999999999999999999999999999999999997777777
Q ss_pred CcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhH
Q 010317 118 PNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAV 197 (513)
Q Consensus 118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~ 197 (513)
++++.++++|++.|++.+...+....++.|++|+++|++..+..+....+|..+++.++..+. ...+||+.|++.++
T Consensus 83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~---~~~~~~~~~~~~~~ 159 (352)
T PF07690_consen 83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI---SYFGWRWAFLISAI 159 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHCHHCCHHHHHHH
T ss_pred hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh---hccccccccccccc
Confidence 888899999999999999999999999999999999999999999999999999988776543 35689999999888
Q ss_pred HHHHHHHH-HhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhh
Q 010317 198 PAAVIGVG-VLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWK 276 (513)
Q Consensus 198 ~~~i~~~~-~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (513)
..++..+. .++++|+|.....+.+.++ + .++.+ .....++
T Consensus 160 ~~~~~~il~~~~~~~~~~~~~~~~~~~~-------------~--------~~~~~------------------~~~~~~~ 200 (352)
T PF07690_consen 160 LSLIAAILFILFLPEPPPPRERESPKES-------------E--------SKKPK------------------PLKPGFK 200 (352)
T ss_dssp HHHHHHHHHHCCC---STTTT--SSTTT-------------T----------HHH------------------CCCH-CT
T ss_pred hhhhhhhhHhhhhhhccccccccccccc-------------c--------ccccc------------------ccccccc
Confidence 87766553 3555555431100000000 0 00000 0000012
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHH-HhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCCh
Q 010317 277 DLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVF-KGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRR 355 (513)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr 355 (513)
...+ ++.++......+...........+.|.++ +..+.+..........+.++...++.++.+++.||+++|
T Consensus 201 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (352)
T PF07690_consen 201 SLFK-------NPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR 273 (352)
T ss_dssp HHHH-------HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccc-------cchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 1111 11010111111122222344566777763 333333112222234556677777789999999999998
Q ss_pred hHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHH
Q 010317 356 PLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNR 435 (513)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~ 435 (513)
+.............+.+.. .....+........... ++......+....+..|.+|++.|+++.|+.+.+.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 345 (352)
T PF07690_consen 274 RRLLIAILLLILGALGLLL----LPFSSSPVWLIIALFLI----GFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGS 345 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCC----SHHHCHHHHHHHHHHHH----HHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7765543332222222111 11111111111111111 111112234567788999999999999999999999
Q ss_pred HHHHHH
Q 010317 436 LVSGVI 441 (513)
Q Consensus 436 ~~~~~~ 441 (513)
+++.+.
T Consensus 346 ~~~~ig 351 (352)
T PF07690_consen 346 LGGIIG 351 (352)
T ss_dssp HHHHHH
T ss_pred HHHHHC
Confidence 866654
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-23 Score=203.86 Aligned_cols=356 Identities=14% Similarity=0.090 Sum_probs=226.0
Q ss_pred HHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHh
Q 010317 37 ASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGL 116 (513)
Q Consensus 37 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~ 116 (513)
.....++.+.+.+.+++..|.+.+++|.|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++..++...+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~ 90 (381)
T PRK03633 11 LLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGL 90 (381)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhh
Q 010317 117 APNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAA 196 (513)
Q Consensus 117 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~ 196 (513)
++|++.++++|++.|++.+...+.....+.+..++++|++..+.......+|..+++.+...+... ..|+. .+..+
T Consensus 91 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~~~~-~~~~~ 166 (381)
T PRK03633 91 MVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE---LMSVL-PWVTG 166 (381)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---ccchH-HHHHH
Confidence 999999999999999999887776666677888889999999998888889988888776544321 11222 22212
Q ss_pred HHHHHHH-HHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchh
Q 010317 197 VPAAVIG-VGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVW 275 (513)
Q Consensus 197 ~~~~i~~-~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (513)
+...... +.....+|++. + +++ . ...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~------~-------------------------------------~~~---~-------~~~ 193 (381)
T PRK03633 167 LVLAAILPLLFTRILNQQA------E-------------------------------------NHD---S-------TSI 193 (381)
T ss_pred HHHHHHHHHHHhcccCCCC------C-------------------------------------CCC---C-------CCH
Confidence 1111111 11111111100 0 000 0 001
Q ss_pred hhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCCh
Q 010317 276 KDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRR 355 (513)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr 355 (513)
++.++.+ ..+.... .. +...........+.|.++++.+.+..... .......+...++.+..+++.||+|||
T Consensus 194 ~~~~~~~--~~~~~~~-~~----~~~~~~~~~~~~~lp~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~~~~ 265 (381)
T PRK03633 194 WPMLKLR--QARLGVN-GC----IISGIVLGSLYGLMPLYLNHQGMSDASIG-FWMALLVSAGILGQWPIGRLADRFGRL 265 (381)
T ss_pred HHHHHhc--chHHHHH-HH----HHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHhhhHHHHHHcCcH
Confidence 1111111 1111110 01 11111122333467888876654433222 233445567788889999999999999
Q ss_pred hHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHH
Q 010317 356 PLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNR 435 (513)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~ 435 (513)
+.+..+......+.+... . ..... ........ .. ....|....+..|..|++.++...+..+...+
T Consensus 266 ~~l~~~~~~~~~~~~~~~------~--~~~~~--~~~~l~g~--~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (381)
T PRK03633 266 LVLRVQVFVVILGSIAML------S--QAAMA--PALFILGA--AG--FTLYPVAMAWACEKVEHHELVAMNQALLLSYT 331 (381)
T ss_pred HHHHHHHHHHHHHHHHHh------h--hHHHH--HHHHHHHH--HH--HhHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 987765444333322111 0 00111 11111111 11 11223445566788888877777777666667
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHh
Q 010317 436 LVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIF 471 (513)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (513)
+++.+.+.....+.+..++.+.|.+.+.+.++..+.
T Consensus 332 lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 332 VGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 767777777777777777777888777776665443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=203.58 Aligned_cols=355 Identities=15% Similarity=0.101 Sum_probs=214.6
Q ss_pred HHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHH---h-cCcHHHHHHHHHHhh
Q 010317 56 LYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMG---L-APNYPFLIVGRMIAG 131 (513)
Q Consensus 56 ~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~---~-~~~~~~l~~~R~l~G 131 (513)
+.+.+|+|.++++.++..+.+.+++.++++++|+++||+|||+++..+.+++.++..++. + .+++..+++.|++.|
T Consensus 37 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G 116 (402)
T TIGR00897 37 SPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRG 116 (402)
T ss_pred HHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHH
Confidence 445578999999999999999999999999999999999999999999999998876553 3 357888999999999
Q ss_pred hhcccccccccceeeccCCCcccccccchhhHHHHHHH-HHHHHHHHHhcCCCCCcchHHHHHhhhHHHHH-HHHHHhcc
Q 010317 132 IGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGI-LSGYVFNYALSGLPGNINWRIMLGLAAVPAAV-IGVGVLIM 209 (513)
Q Consensus 132 ~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i-~~~~~~~l 209 (513)
++.+...+....++.|..|+++|++++++.+....+|. +.++.++..+. ...+|+..++.......+ ..+..++.
T Consensus 117 ~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~---~~~g~~~~~~~~~~~~~~~~~~~~~~~ 193 (402)
T TIGR00897 117 LGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI---PAFGEMNTLWSALAFVLTGGVIALFSN 193 (402)
T ss_pred cchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHHHHHHHHHHHhcc
Confidence 99887766666778899999999999999988888886 45665543322 234654433332222111 11222333
Q ss_pred CCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHH
Q 010317 210 PESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRM 289 (513)
Q Consensus 210 pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (513)
+|.+. +++.+ ++++ .++.. ..++.++++ +
T Consensus 194 ~~~~~-------~~~~~--------~~~~----~~~~~-------------------------~~~~~~~~~-------~ 222 (402)
T TIGR00897 194 KDIFT-------PQHMQ--------TREK----FSELG-------------------------KAATILFTN-------P 222 (402)
T ss_pred CCCCC-------ccccc--------CCcc----hhhHH-------------------------HHHHHHHcC-------h
Confidence 33211 00000 0000 00000 001112111 1
Q ss_pred HHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHH-hhhHHHHHH
Q 010317 290 LIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLL-LGSSGMVGS 368 (513)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~-~~~~~~~~~ 368 (513)
.++......+.+..+.+....|.|.++++.+.+..... .......++..++.+..+++.||++||+.+. .+.+.+..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~ 301 (402)
T TIGR00897 223 NVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWL-QIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIF 301 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 11111122233344456667788988887665543322 2334466788899999999999999988653 222222222
Q ss_pred HHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010317 369 LLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSI 448 (513)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~ 448 (513)
.+.+...... .....+......+....... +..+. .....|..| +.|+++.|+.+...++++.+.+.....+
T Consensus 302 ~~~l~~~~~~--~~~~~~~~~~~~~~~G~~~~----~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l 373 (402)
T TIGR00897 302 TLALYYIPQH--FGHSFAVALIIAIALGIFLA----GYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLF 373 (402)
T ss_pred HHHHHHHHHc--cCCcHHHHHHHHHHHHHHHH----HHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111110 01111111111111111111 11122 223467756 5799999999999999888888777777
Q ss_pred HHhcccchhHHHHHHHHHHHHHhhh
Q 010317 449 SHRLSFGGTFFLLAGITTVGTIFFY 473 (513)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (513)
.+..++...+++.+++.+++.+..+
T Consensus 374 ~~~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 374 IGFFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHH
Confidence 7777777788888877777655543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=205.55 Aligned_cols=141 Identities=16% Similarity=0.225 Sum_probs=126.0
Q ss_pred HHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHH---
Q 010317 38 SINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAM--- 114 (513)
Q Consensus 38 ~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~--- 114 (513)
.+..+.-+++....+...|.+++++|+++.+.++..+.+.+++.+++++.|+++||+|||+++..+.++++++++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~ 111 (438)
T PRK10133 32 CSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPA 111 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777888888999999999999999999999999999999999999999999999999999999999875
Q ss_pred HhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 010317 115 GLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYA 178 (513)
Q Consensus 115 ~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~ 178 (513)
++++++..++++|+++|++.|...+....++.|+.|.++|+..++..+..+.+|..++++++..
T Consensus 112 ~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 112 AEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999998777777777888888889998888877543
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=207.88 Aligned_cols=339 Identities=18% Similarity=0.166 Sum_probs=206.0
Q ss_pred hhcccccchhhHH-HHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcC-cHHH
Q 010317 45 GYDIGVMSGAVLY-IKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAP-NYPF 122 (513)
Q Consensus 45 g~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~-~~~~ 122 (513)
..+...+++..|. +++++|+++.+.+++.+++.+++++++++.|+++||+|||+.+.++.++..++.+.+++++ +++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (366)
T TIGR00886 14 FSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSV 93 (366)
T ss_pred HHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3444566778884 9999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcC-------CCCCcchHHHHHh-
Q 010317 123 LIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSG-------LPGNINWRIMLGL- 194 (513)
Q Consensus 123 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~-------~~~~~~Wr~~~~~- 194 (513)
+++.|++.|++.+. ......+++|++|+++|++..++......+|..++..+...+.. .....+||+.|++
T Consensus 94 ~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~ 172 (366)
T TIGR00886 94 LLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIV 172 (366)
T ss_pred HHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHH
Confidence 99999999998654 45567789999999999999998886666676666554432221 1123589999843
Q ss_pred hhHHH-HHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcc
Q 010317 195 AAVPA-AVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEG 273 (513)
Q Consensus 195 ~~~~~-~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (513)
.++.. ++..+...+.+|+|+- +.++.+.. ..+ + .... .+ +...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-------~~~--~-------------~~~~------~~---~~~~ 216 (366)
T TIGR00886 173 PAGILLLPALLIFFVGADTPPG-----KPATGKLS-------FKG--A-------------RWSV------GT---GALG 216 (366)
T ss_pred HHHHHHHHHHHHHHhcccCCcc-----cccchhcc-------ccc--c-------------cccc------cc---hhHH
Confidence 34333 3333344556776631 10000000 000 0 0000 00 0000
Q ss_pred hhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhC-CCCCchhHHHHHHHHhHHHHHHHHHHHHHhhcc
Q 010317 274 VWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGA-GIHRKPVLFGINVVMGLAKTFFVVLSALHLDKF 352 (513)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 352 (513)
.+++.++.+ ..+...+..+......+....+.|.++++. +.+.... ..+.....+...++.++.+++.||+
T Consensus 217 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~g~l~~r~ 288 (366)
T TIGR00886 217 DQLKVFRDR-------HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTA-GAYASLGGLLGSLARPLGGAISDRL 288 (366)
T ss_pred HHHHHHhcc-------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHHHHhhccchHHHhh
Confidence 112222211 111111112222222344556677777543 3333222 2234455667788888999999999
Q ss_pred CChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHH
Q 010317 353 GRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAIS 432 (513)
Q Consensus 353 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~ 432 (513)
|||+.+..+......+..++... ............ ...........+. +..+..++|++| +.|+++.|+.++
T Consensus 289 g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~g~~~-~~~~~~~~~~~~-~~~g~~~g~~~~ 360 (366)
T TIGR00886 289 GGARKLLMSFLGVAMGAFLVVLG----LVSPLSLAVFIV--LFVALFFFSGAGN-GSTFALVPHIFR-RATGAVSGLVGA 360 (366)
T ss_pred ccchhHHHHHHHHHHHHHHHHhc----CCCcchHHHHHH--HHHHHHHHhcccc-chhhhcchhhch-hhcccHHHHHHH
Confidence 99887765544333333222211 111101111111 1111111222222 345778889988 579999999988
Q ss_pred HHHH
Q 010317 433 VNRL 436 (513)
Q Consensus 433 ~~~~ 436 (513)
++++
T Consensus 361 ~~~~ 364 (366)
T TIGR00886 361 IGNL 364 (366)
T ss_pred hccC
Confidence 8875
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-23 Score=205.81 Aligned_cols=366 Identities=16% Similarity=0.098 Sum_probs=226.6
Q ss_pred HHHHhhcccccchhhHHHHhhhCCCchh-----HHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHH
Q 010317 41 SILLGYDIGVMSGAVLYIKEDLEITEVQ-----VEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMG 115 (513)
Q Consensus 41 ~~~~g~~~~~~~~~~~~~~~~~~~s~~~-----~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~ 115 (513)
.+..++..+...+.+|.+.+++|++..+ .+++.+++.++..+++++.|+++||+|||+++..+.+...++.++.+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 102 (408)
T PRK09874 23 CFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMG 102 (408)
T ss_pred HHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHH
Confidence 3344445556677888888999988655 48889999999999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhh
Q 010317 116 LAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLA 195 (513)
Q Consensus 116 ~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~ 195 (513)
++++++.+++.|++.|++.+ ..+....++.|..|+++|+++.+.......+|..+++.+...+. +..+||+.|++.
T Consensus 103 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~~~~~~~~~~ 178 (408)
T PRK09874 103 LAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLA---DSYGLRPVFFIT 178 (408)
T ss_pred HHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCHHHHHHHH
Confidence 99999999999999999755 34555667889999999999999988888888887776655443 245899999887
Q ss_pred hHHHHHHHHH-HhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcch
Q 010317 196 AVPAAVIGVG-VLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGV 274 (513)
Q Consensus 196 ~~~~~i~~~~-~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (513)
++..++..+. .+++||.++. ++. ++ +...++..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~-------~~~-----------~~-~~~~~~~~~-------------------------- 213 (408)
T PRK09874 179 ASVLFLCFLVTLFCIRENFQP-------VSK-----------KE-MLHMREVVT-------------------------- 213 (408)
T ss_pred HHHHHHHHHHHHHHhccCccc-------ccc-----------hh-hhHHHHHHH--------------------------
Confidence 7766554443 4455665320 000 00 000000000
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchh--H-HHHHHHHhHHHHHHHHHHHHHhhc
Q 010317 275 WKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPV--L-FGINVVMGLAKTFFVVLSALHLDK 351 (513)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~d~ 351 (513)
..++ +............. + ........+.|.+..+.+...... . .......++...++....+++.||
T Consensus 214 ---~~~~--~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr 284 (408)
T PRK09874 214 ---SLKN--PKLVLSLFVTTLII---Q-VATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR 284 (408)
T ss_pred ---hCcC--CchHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0000 00111111111111 0 111122233444444322222111 1 112233455666777788999999
Q ss_pred cCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHH
Q 010317 352 FGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAI 431 (513)
Q Consensus 352 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~ 431 (513)
+|||+.+..+........+.... . ...+......+... +......+....+..+..|.+.|++..++.+
T Consensus 285 ~g~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 353 (408)
T PRK09874 285 IGPEKILITALIFSVLLLIPMSF-----V--QTPLQLGILRFLLG----AADGALLPAVQTLLVYNSSNQIAGRIFSYNQ 353 (408)
T ss_pred cccchhHHHHHHHHHHHHHHHHH-----h--ccHHHHHHHHHHHH----hhhHhhHHHHHHHHHHhCCcccceeeehHHH
Confidence 99999887765443333222221 1 11111111111111 1111111222334567778889999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhee
Q 010317 432 SVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVF 475 (513)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (513)
.+.+++..+.+.....+.+..++...|++.+++.+++.+..++.
T Consensus 354 ~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 354 SFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777666667777778888888888888777665443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-23 Score=205.98 Aligned_cols=369 Identities=16% Similarity=0.181 Sum_probs=241.2
Q ss_pred HhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHhhhhccc
Q 010317 59 KEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAP--NYPFLIVGRMIAGIGVGY 136 (513)
Q Consensus 59 ~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~R~l~G~~~g~ 136 (513)
+.+++.+++|.+++.|.++.|+.+++++.|+++||||-|+++..+.+++++++++.-.+. +++.+++.|+++|++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 446888999999999999999999999999999999999999999999999999888764 455789999999999999
Q ss_pred ccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHhc-cCCCchh
Q 010317 137 SLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLI-MPESPRW 215 (513)
Q Consensus 137 ~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~~-lpEsp~~ 215 (513)
..+......+.|.|+++|++..++...+..+|.+++..++..+.. ...||++.|++.++.+++..+.+++ ..|+|.-
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~--s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~ 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCE--SSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc--cCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 999999999999999999999999888888888777644433332 2479999999999998887776543 4456531
Q ss_pred HHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHH
Q 010317 216 LVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVG 295 (513)
Q Consensus 216 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (513)
.+.+ .+++.+...+.+.+. +..+ +....|+++++ ..-++.+.
T Consensus 223 ---------h~~i----------s~~El~~I~~~k~~~-----~~~~-------~~~vP~~~i~t-------s~~vwai~ 264 (466)
T KOG2532|consen 223 ---------HPNI----------SEKELKYIEKGKSEA-----HVKK-------KPPVPYKAILT-------SPPVWAIW 264 (466)
T ss_pred ---------CCCC----------CHHHHHHHHhccccc-----ccCC-------CCCCCHHHHHc-------CHHHHHHH
Confidence 1000 011111111111000 0000 01223555543 44566677
Q ss_pred HHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhH------HHhhhHHHHHHH
Q 010317 296 INFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPL------LLLGSSGMVGSL 369 (513)
Q Consensus 296 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~------~~~~~~~~~~~~ 369 (513)
+..+....+.+.+..|+|+++++....+......++.++.+...+..+++|.++||+.+|.+ -+...+......
T Consensus 265 ~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~a 344 (466)
T KOG2532|consen 265 ISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPA 344 (466)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHH
Confidence 77788888889999999999986532222333447778899999999999999999876411 111111111111
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccC-ChhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010317 370 LLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIF-PLRLRAQGSALAISVNRLVSGVISMTFLSI 448 (513)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~-P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~ 448 (513)
+.+.... .......+....++.....+.++...| .+.+-+- -++.-+...|+.+.++.+.+.+.+.....+
T Consensus 345 i~l~~l~--~~~~~~~~~a~~~l~~~~~~~g~~~~G------f~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~ 416 (466)
T KOG2532|consen 345 VFLLVLA--FTSDEHRLLAVILLTIAIGLSGFNISG------FYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGII 416 (466)
T ss_pred HHHHeee--ecCCCcchHHHHHHHHHHHHcccchhh------hHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeE
Confidence 1111111 112222222222222222222221111 1222222 445578888999998888777776665554
Q ss_pred HH---hcccchhHHHHHHHHHHHHHhhhee
Q 010317 449 SH---RLSFGGTFFLLAGITTVGTIFFYVF 475 (513)
Q Consensus 449 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (513)
.. ...+...|++.+++.+++.++..++
T Consensus 417 ~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 417 VTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred eCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 42 2356678998888888877654443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=206.99 Aligned_cols=375 Identities=12% Similarity=0.094 Sum_probs=231.6
Q ss_pred HHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhcccccccc-----CchHH-HHHHHHHHHHHHHHH
Q 010317 41 SILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYI-----GRRYT-IVVAAATFLVGALAM 114 (513)
Q Consensus 41 ~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~-----GRr~~-~~~~~~~~~i~~~~~ 114 (513)
++..|+.....+...|...++.|.+.++.+.. +.....+ ++.+++|+++||+ |||+. +..+.+...++....
T Consensus 21 ~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~ 98 (491)
T PRK11010 21 GFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAM 98 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHH
Confidence 34455666677778888888889999998886 4444444 6899999999999 99985 667777777777777
Q ss_pred Hhc---CcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Q 010317 115 GLA---PNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIM 191 (513)
Q Consensus 115 ~~~---~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~ 191 (513)
++. .+++.+.+.|++.|++.+...+...++..|++|+++|+++.++....+.+|.+++..+...+.. ...|||+.
T Consensus 99 a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~--~~~GWr~~ 176 (491)
T PRK11010 99 GFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLAD--RYLGWQGM 176 (491)
T ss_pred HHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccCHHHH
Confidence 775 4677889999999999998888888999999999999999999999899998888766555442 13599999
Q ss_pred HHhhhHHHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccC
Q 010317 192 LGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTG 271 (513)
Q Consensus 192 ~~~~~~~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (513)
|++.++..++..+..+++||+++.. .+ ++ +.+ +...+
T Consensus 177 f~i~a~l~ll~~l~~~~~~e~~~~~---~~-~~-----------~~~-~~~~~--------------------------- 213 (491)
T PRK11010 177 YWLMAALLIPCIIATLLAPEPTDTI---PV-PK-----------TLE-QAVVA--------------------------- 213 (491)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccc---cc-cc-----------chh-hhHHH---------------------------
Confidence 9998887776666556678875310 00 00 000 00000
Q ss_pred cchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHH-HhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhh
Q 010317 272 EGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVF-KGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLD 350 (513)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 350 (513)
.+++.++.+ ......... . ....+......+.+.++ +..+.+.............++..++.++++++.|
T Consensus 214 --~l~~~~~~~--~~~~~ll~~--~---l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~d 284 (491)
T PRK11010 214 --PLRDFFGRN--NAWLILLLI--V---LYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQ 284 (491)
T ss_pred --HHHHHHcCc--CHHHHHHHH--H---HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011121111 011111111 1 11111222223444444 3344433322221123445678889999999999
Q ss_pred ccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHH
Q 010317 351 KFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALA 430 (513)
Q Consensus 351 ~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~ 430 (513)
|+|||+.+..+.+...+..+.+..... . ..+.+..........+..+ .+. +..+.+..++.|++.+++..|+.
T Consensus 285 r~g~~~~l~i~~~l~~l~~l~~~~l~~--~-~~~~~~l~~~~~l~~~~~g---~~~-~~~~a~~~~l~~~~~~~t~~gl~ 357 (491)
T PRK11010 285 RLSLFRALMIFGILQGVSNAGYWLLSI--T-DKNLYSMGAAVFFENLCGG---MGT-AAFVALLMTLCNKSFSATQFALL 357 (491)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHh--c-cccHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHcCCCCcHHHHHHH
Confidence 999988776554333332222211111 1 1111111111111111111 111 12356677888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhheecccC
Q 010317 431 ISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPET 479 (513)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 479 (513)
+++..+++.+.+.....+.+..++...|.+.+++++++.+... ..+++
T Consensus 358 ~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~-~~~~~ 405 (491)
T PRK11010 358 SALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLL-VCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence 9988887777777777777777777778777777777655543 34544
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-22 Score=188.71 Aligned_cols=359 Identities=20% Similarity=0.239 Sum_probs=237.7
Q ss_pred cccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHH---HHHH
Q 010317 49 GVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYP---FLIV 125 (513)
Q Consensus 49 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~---~l~~ 125 (513)
...++..+.+.+|+|+|+.|.+++.++-.+...+.-++.|.+.||||.|++...++++..+-++..+++.+.+ ++++
T Consensus 31 ~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~ 110 (417)
T COG2223 31 TLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLV 110 (417)
T ss_pred HHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHH
Confidence 4455666778899999999999999999999999999999999999999999999999999999999986655 9999
Q ss_pred HHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcc---hHHHHHhhhHHHHHH
Q 010317 126 GRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNIN---WRIMLGLAAVPAAVI 202 (513)
Q Consensus 126 ~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~---Wr~~~~~~~~~~~i~ 202 (513)
.+.+.|++.|. ..++..++++++|++++|.+++++. .-++|..+...++..+.. ..+ ||..-.+..++.++.
T Consensus 111 ~gll~G~~Gas-Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~---~~g~~~w~~~~~i~~~~l~v~ 185 (417)
T COG2223 111 IGLLLGLAGAS-FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAV---AFGFLAWRNVAGIYVVALAIA 185 (417)
T ss_pred HHHHHhcccce-ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHH
Confidence 99999997554 4566688999999999999999988 555665554444333321 224 998877766666654
Q ss_pred HHH-HhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcC
Q 010317 203 GVG-VLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILK 281 (513)
Q Consensus 203 ~~~-~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (513)
.+. ++.+.+.|.. ++.. .+... .+ .+...+
T Consensus 186 ~v~~~~~~~d~p~~--------r~~~-------~~~~~-~~--------------------------------~~~v~~- 216 (417)
T COG2223 186 AVLAWLGMNDVPEH--------RASV-------KPQLP-AQ--------------------------------LKAVFS- 216 (417)
T ss_pred HHHHHHHhCCChhh--------hccc-------cccch-hH--------------------------------HHHHhc-
Confidence 443 3334343321 0000 00000 00 000100
Q ss_pred CChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhC-CCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHh
Q 010317 282 PTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGA-GIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLL 360 (513)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~ 360 (513)
++-.+.++..++....++-++..++|.++++. +.+.... -.......+.+.+...++|+++||+|.++++..
T Consensus 217 ------~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~A-g~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~ 289 (417)
T COG2223 217 ------NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTA-GLIAFLFPLIGALARPLGGWLSDRIGGRRVTLA 289 (417)
T ss_pred ------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhH-HHHHHHHHHHHHHHHhccchhhhhccchhHHHH
Confidence 01112234455556667778888999998754 3333222 123444455666777889999999999998887
Q ss_pred hhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHH
Q 010317 361 GSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGV 440 (513)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~ 440 (513)
....++++..+............+.+.... .......+...|.+ ..+-.++..||.+ -+.+.|+...++.+++..
T Consensus 290 ~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~l~l~~~~G~GnG-svfk~Ip~if~~~-~G~v~G~vga~G~lGGf~ 364 (417)
T COG2223 290 VFVGMALAAALLSLFLTGFGHGGSFVVFVA---VFLALFVFAGLGNG-SVFKMIPVIFPKE-TGAVTGIVGAIGGLGGFF 364 (417)
T ss_pred HHHHHHHHHHHHHccccccccCcchHHHHH---HHHHHHHHhccCcc-hheeechHHHHhh-hhHHHHHHHHhccccccc
Confidence 776666666555432221111111122111 11122223333333 4577788888875 566788999999998888
Q ss_pred HHHHHHHHHHhcc-cchhHHHHHHHHHHHHHhhh
Q 010317 441 ISMTFLSISHRLS-FGGTFFLLAGITTVGTIFFY 473 (513)
Q Consensus 441 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 473 (513)
.+..+....+..+ +..+|+++..+.+++.+..+
T Consensus 365 lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~ 398 (417)
T COG2223 365 LPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTW 398 (417)
T ss_pred hhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 8888777776655 66788888888887766543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-22 Score=199.44 Aligned_cols=346 Identities=12% Similarity=0.090 Sum_probs=222.7
Q ss_pred HHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHH
Q 010317 36 LASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMG 115 (513)
Q Consensus 36 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~ 115 (513)
+.+...+.-|++.+..++..|.+++++|+++.+.+++.+.+.+++.+++++.|+++||+|||+++.++.++++++..+..
T Consensus 7 ~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~ 86 (410)
T TIGR00885 7 LITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFW 86 (410)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 33455566677778888999999999999999999999999999999999999999999999999999999999988754
Q ss_pred h---cCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCC--C-------
Q 010317 116 L---APNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGL--P------- 183 (513)
Q Consensus 116 ~---~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~--~------- 183 (513)
. .++++.+++.|++.|++.|...+....++.|+.|+++|++..++.+.++.+|..+++.+...+... .
T Consensus 87 ~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~ 166 (410)
T TIGR00885 87 PAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL 166 (410)
T ss_pred HHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh
Confidence 3 468999999999999999999999999999999999999999999999999998888775544211 0
Q ss_pred --------------CCcchHHHHHhhhHHHHHHHHHHhc--cCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010317 184 --------------GNINWRIMLGLAAVPAAVIGVGVLI--MPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMI 247 (513)
Q Consensus 184 --------------~~~~Wr~~~~~~~~~~~i~~~~~~~--lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 247 (513)
...+||+.|++.++..++..+...+ +||.+. ++. .+.+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~--------~~~---------~~~~~~------- 222 (410)
T TIGR00885 167 DKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH--------SDA---------KQISFS------- 222 (410)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--------ccc---------ccccch-------
Confidence 1136999998877766554443322 333211 000 000000
Q ss_pred HHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhH
Q 010317 248 KAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVL 327 (513)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 327 (513)
...+++.++ |.++.. . ...+.+.........|++.+..+.+.......
T Consensus 223 -------------------------~~~~~~~~~--~~~~~~-~----l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~ 270 (410)
T TIGR00885 223 -------------------------ASLSRLARI--RHYREG-V----IAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGF 270 (410)
T ss_pred -------------------------hhHHHHHhC--hhHHHH-H----HHHHHHHHHHHHHHHHHHHHHhhccCCCCHHH
Confidence 001111111 111111 1 11112222222333456666654322222111
Q ss_pred H-HHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccc
Q 010317 328 F-GINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGL 406 (513)
Q Consensus 328 ~-~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (513)
. ...........++.++++++.||+++|+++.++..++.++.++... . ..... ...+.... ++....
T Consensus 271 a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~-----~--~~~~~-~~~l~~~g----lf~s~~ 338 (410)
T TIGR00885 271 AANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF-----A--GGHVG-LYCLTLCS----AFMSLM 338 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-----c--CChHH-HHHHHHHH----HHHHHH
Confidence 1 1222233566788999999999999999887665544443333321 1 11111 11111211 222233
Q ss_pred cceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010317 407 GPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHR 451 (513)
Q Consensus 407 ~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 451 (513)
.|..+....+..+++.+..+.++..++ +++.+.+.+...+.|.
T Consensus 339 fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~ 381 (410)
T TIGR00885 339 FPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDM 381 (410)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHH
Confidence 356677778888888766666666655 6667777777777764
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-22 Score=196.85 Aligned_cols=157 Identities=17% Similarity=0.119 Sum_probs=131.4
Q ss_pred cchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 010317 51 MSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIA 130 (513)
Q Consensus 51 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~ 130 (513)
+....+.+.+|++.++.+.+++.+.+.+++.++++++|+++||+|||+++.++.+++.+++..+++..+. ++.|+++
T Consensus 22 ~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~ 98 (393)
T PRK11195 22 LLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLV 98 (393)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3445556778999999999999999999999999999999999999999999999999998887776654 7899999
Q ss_pred hhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHhccC
Q 010317 131 GIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIMP 210 (513)
Q Consensus 131 G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~~lp 210 (513)
|++.+...+....++.|++|+++|+++.+..+....+|.++++.++..+.. +.|+..+.+.+...++..+..+.+|
T Consensus 99 G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~----~~~~~~~~i~~~~~~~~~~~~~~l~ 174 (393)
T PRK11195 99 GIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD----PHAEAALAVCALIYLLAALFNLFIP 174 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999998888888888888766542 1377766665554444444556788
Q ss_pred CCch
Q 010317 211 ESPR 214 (513)
Q Consensus 211 Esp~ 214 (513)
|+|.
T Consensus 175 ~~~~ 178 (393)
T PRK11195 175 RLGA 178 (393)
T ss_pred CCcc
Confidence 8764
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-21 Score=190.01 Aligned_cols=361 Identities=12% Similarity=0.100 Sum_probs=205.8
Q ss_pred HHHhhcccccchhhH-HHHhhhCCCchhHHHHHHHH-HHHHHHHHhhccccccccCchHHH-HHHHHHHHHHHHHHHhcC
Q 010317 42 ILLGYDIGVMSGAVL-YIKEDLEITEVQVEVLVGIL-NVFSLIGSLASGKTSDYIGRRYTI-VVAAATFLVGALAMGLAP 118 (513)
Q Consensus 42 ~~~g~~~~~~~~~~~-~~~~~~~~s~~~~~~~~s~~-~~g~~ig~~~~g~l~dr~GRr~~~-~~~~~~~~i~~~~~~~~~ 118 (513)
++.+.......+..| ++++++|.++++.++..+.. ..++.++.++.++ +||+|||+.+ ..+.++.+++..+.++++
T Consensus 25 ~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 103 (393)
T PRK15011 25 FLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNR 103 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 333344344445444 57899999999999987654 5577778877777 9999999875 456666677778888999
Q ss_pred cHHHHHHHHHHhhhhcccccccccceeeccCCCcccc--cccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhh
Q 010317 119 NYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRG--FLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAA 196 (513)
Q Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~--~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~ 196 (513)
+++.+++.+.+.|...+...+....+..|+.+++.|. ...+..+....+|.++++.++..+. .+.|||+.|++.+
T Consensus 104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~---~~~gw~~~f~~~~ 180 (393)
T PRK15011 104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALA---MGFSFTVMYLSAA 180 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHH---HhcChHHHHHHHH
Confidence 9998776655555444455556666677776655553 3345666667788888877765553 2459999999887
Q ss_pred HHHHHHHHH-HhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchh
Q 010317 197 VPAAVIGVG-VLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVW 275 (513)
Q Consensus 197 ~~~~i~~~~-~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (513)
+..++..+. .+++||+++- +.++ ++ + .+. .
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~-----~~~~------------~~-----------------~-~~~--------------~ 211 (393)
T PRK15011 181 VAFIVCGVMVWLFLPSMRKE-----LPLA------------TG-----------------T-LEA--------------P 211 (393)
T ss_pred HHHHHHHHHHHhhcCccCCC-----Cccc------------cc-----------------c-ccc--------------c
Confidence 766555443 4557776520 0000 00 0 000 0
Q ss_pred hhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHh-CCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCC
Q 010317 276 KDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKG-AGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGR 354 (513)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gr 354 (513)
+ ++ .+......... .. ..........+.|.++++ .+.+...... ..........++.++.+++.||+||
T Consensus 212 ~---~~-~~~~~~~~~~~----~~-~~~~~~~~~~~~p~~l~~~~~~~~~~~g~-~~~~~~~~~i~~~~~~G~l~dr~g~ 281 (393)
T PRK15011 212 R---RN-RRDTLLLFVIC----TL-MWGTNSLYIINMPLFIINELHLPEKLAGV-MMGTAAGLEIPTMLIAGYFAKRLGK 281 (393)
T ss_pred c---cc-cccHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 0 00 00001011111 11 111122334567777654 3333222211 2233445566778899999999999
Q ss_pred hhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHH-HHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHH
Q 010317 355 RPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCII-AVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISV 433 (513)
Q Consensus 355 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~ 433 (513)
|+.+..+..........+. ..+ +......... ......... +....+.+|.+|.+ |+++.++.+..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~l~~~~l~~~~~g~~~-----~~~~~~~~~~~p~~-~g~~~~~~~~~ 348 (393)
T PRK15011 282 RFLMRVAAVAGVCFYAGML-----MAH--SPAILLGLQLLNAIYIGILG-----GIGMLYFQDLMPGQ-AGSATTLYTNT 348 (393)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHh--hHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhCCCC-cchHHHHHHHH
Confidence 9877655433222211111 011 1111111111 111111111 12234568999965 99999999888
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhheecccC
Q 010317 434 NRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPET 479 (513)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 479 (513)
.+++..+.+.....+.+..++...+++.+.+.+++.+. ++..||+
T Consensus 349 ~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~ 393 (393)
T PRK15011 349 SRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFC-LLRIKDV 393 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHhhcCC
Confidence 88877777776666667667767777666666665544 4455653
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-21 Score=191.89 Aligned_cols=166 Identities=21% Similarity=0.267 Sum_probs=139.8
Q ss_pred hhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHH
Q 010317 45 GYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLI 124 (513)
Q Consensus 45 g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~ 124 (513)
.+....+.+..|.+.+++|.++.+.++..+++.+++.++++++|+++||+|||+++..+.++..++.....++++++.++
T Consensus 21 ~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 100 (394)
T PRK11652 21 QMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLI 100 (394)
T ss_pred HHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 34455667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHH
Q 010317 125 VGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGV 204 (513)
Q Consensus 125 ~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~ 204 (513)
+.|++.|++.+...+....+..|..+.++|++..+.......+|..+++.+...+. +..+||+.|++.++..++..+
T Consensus 101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~---~~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 101 AASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT---TLFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccChHHHHHHHHHHHHHHHH
Confidence 99999999988777777777889899889999888887777878777776655443 245899999987776554433
Q ss_pred -HHhccCCCc
Q 010317 205 -GVLIMPESP 213 (513)
Q Consensus 205 -~~~~lpEsp 213 (513)
..+++||++
T Consensus 178 ~~~~~~~~~~ 187 (394)
T PRK11652 178 SMARWMPETR 187 (394)
T ss_pred HHHHhCCccC
Confidence 455678875
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-21 Score=188.77 Aligned_cols=332 Identities=15% Similarity=0.129 Sum_probs=208.3
Q ss_pred cccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 010317 49 GVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRM 128 (513)
Q Consensus 49 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~ 128 (513)
..+++..|.+++|+|++.++.++..+++.+++.+++++.|+++||+|||+++.++.++..++...+ ..++.+.+++.|+
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 95 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA 95 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999988888777 7889999999999
Q ss_pred HhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHhc
Q 010317 129 IAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLI 208 (513)
Q Consensus 129 l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~~ 208 (513)
+.|++.+...+..+.++.|++| ++|+++.+..+....+|..+++.+...+.... ..+||+.|.+.++..++.. ..+
T Consensus 96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~-~~~w~~~f~~~~~~~~~~~--~~~ 171 (355)
T TIGR00896 96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS-GGHWQQALAWWALPALLAL--LAW 171 (355)
T ss_pred HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHH--HHH
Confidence 9999999877777778888886 68999999988888888887776654443211 1249998877665433322 223
Q ss_pred cCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHH
Q 010317 209 MPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRR 288 (513)
Q Consensus 209 lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (513)
+||+++ +. + ++.. .. . ..+++.+++ +...
T Consensus 172 ~~~~~~------~~--------------~-----------------~~~~-~~---~-------~~~~~~~~~--~~~~- 200 (355)
T TIGR00896 172 IPQVRR------RV--------------A-----------------ANQT-TT---R-------LTPVRIWRS--PLAW- 200 (355)
T ss_pred hhhhcc------cc--------------C-----------------CCCC-CC---C-------CCCchhhcC--HhHH-
Confidence 344321 00 0 0000 00 0 001111111 1111
Q ss_pred HHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccC-ChhHHHhhhHHHHH
Q 010317 289 MLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFG-RRPLLLLGSSGMVG 367 (513)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g-rr~~~~~~~~~~~~ 367 (513)
......+......+....|.|.++++.+.+... .........++..++.++.+++.||++ ||..+..+...+..
T Consensus 201 ----~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~-~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 275 (355)
T TIGR00896 201 ----QVTVFFGLQSGLYYSLIGWLPAILISHGASAAT-AGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV 275 (355)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence 111112222233445566888888776544322 223445567788899999999999994 55555554444433
Q ss_pred HHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeec-ccCChhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 010317 368 SLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSS-EIFPLRLRAQGSALAISVNRLVSGVISMTFL 446 (513)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~ 446 (513)
+.+.+.... ....... . ... ++......+....... +..+++.++...++.+.++++++.+.+....
T Consensus 276 ~~~~~~~~~------~~~~~~~-~-~l~----g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G 343 (355)
T TIGR00896 276 GLCGLLFAP------MHGLWAW-A-LVL----GLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVG 343 (355)
T ss_pred HHHHHHHhh------hhHHHHH-H-HHH----HHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222211 1111111 1 111 1111111122222233 4445677888899988888887777776666
Q ss_pred HHHHhcc
Q 010317 447 SISHRLS 453 (513)
Q Consensus 447 ~~~~~~~ 453 (513)
.+.+..+
T Consensus 344 ~l~~~~g 350 (355)
T TIGR00896 344 VLHDISG 350 (355)
T ss_pred HHHHHhc
Confidence 6665443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=191.50 Aligned_cols=333 Identities=12% Similarity=0.046 Sum_probs=199.5
Q ss_pred ccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhcccccccc-----CchHHH-HHHHHHHHHHHHHHHhcC---
Q 010317 48 IGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYI-----GRRYTI-VVAAATFLVGALAMGLAP--- 118 (513)
Q Consensus 48 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~-----GRr~~~-~~~~~~~~i~~~~~~~~~--- 118 (513)
...+++..|.+.+|+|+|.++.++.... .+...+ .+++|+++||+ |||+.+ +.+.++.++.....++.+
T Consensus 4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~ 81 (356)
T TIGR00901 4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST 81 (356)
T ss_pred chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence 4556778899999999999999998655 455554 89999999998 899974 667777777777777773
Q ss_pred cHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCC-----CcchHHHHH
Q 010317 119 NYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPG-----NINWRIMLG 193 (513)
Q Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-----~~~Wr~~~~ 193 (513)
+.+.+....++.+++.+...+...+++.|++|+++|+++.+....+..+|.+++..+...+....+ .++||+.|+
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~ 161 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFF 161 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHH
Confidence 455567777788887777777778899999999999999999999999998888777654432211 234999999
Q ss_pred hhhHHHHHHHHHHh-ccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCc
Q 010317 194 LAAVPAAVIGVGVL-IMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGE 272 (513)
Q Consensus 194 ~~~~~~~i~~~~~~-~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (513)
+.++..++..+..+ ..||+++. +.++ + ++.++ ..+.
T Consensus 162 i~ai~~l~~~~~~~~~~~e~~~~-----~~~~-~----------~~~~~-~~~~-------------------------- 198 (356)
T TIGR00901 162 WTALLILPGLLVTLFLAKEPQED-----ASVP-K----------PLTQA-VLKP-------------------------- 198 (356)
T ss_pred HHHHHHHHHHHHHHHhccCCCcc-----cccc-h----------hHHHH-HHHH--------------------------
Confidence 98887766555444 45775321 0000 0 00000 0000
Q ss_pred chhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhcc
Q 010317 273 GVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKF 352 (513)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 352 (513)
++++++++ ..+...... ...+......+....+.|.++++.+.+.............+...++.++++++.||+
T Consensus 199 --~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~ 272 (356)
T TIGR00901 199 --IREFFQRK--NMIQALLLL--LLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL 272 (356)
T ss_pred --HHHHHHhc--CchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh
Confidence 11111110 001111111 111122233344555677777764433322222122223356678889999999999
Q ss_pred CChhHHHhhhHHHHHHHHHHHHHhhccCCC----CchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHH
Q 010317 353 GRRPLLLLGSSGMVGSLLLLGIGSKILEGS----TPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSA 428 (513)
Q Consensus 353 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g 428 (513)
|||+.+..+.+................... ...+....+.+. ..+......+....+.+|.+|++.|++..|
T Consensus 273 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g 348 (356)
T TIGR00901 273 NILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITL----EAVTGGLGTVAFVAFLSKLSNPKFGATQMA 348 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHH----HHHHhHHHHHHHHHHHHHhcCCCccHHHHH
Confidence 999887766654444333222211000000 111111111111 111111122345678899999999999999
Q ss_pred HHHHHHH
Q 010317 429 LAISVNR 435 (513)
Q Consensus 429 ~~~~~~~ 435 (513)
+.+++.+
T Consensus 349 ~~~~~~~ 355 (356)
T TIGR00901 349 LLSSLSA 355 (356)
T ss_pred HHHHHHh
Confidence 9887654
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=189.48 Aligned_cols=363 Identities=11% Similarity=0.112 Sum_probs=207.5
Q ss_pred chhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCc-hHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 010317 52 SGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGR-RYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIA 130 (513)
Q Consensus 52 ~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GR-r~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~ 130 (513)
++..+++++++|++.+|.|++.+++.++..++++++|.++||+|| |+++.++.+++.++..+..+.++++.+.+.|++.
T Consensus 23 ~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (418)
T TIGR00889 23 VTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLAN 102 (418)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 455567889999999999999999999999999999999999965 8899999999988888889999999999999999
Q ss_pred hhhcccccccccc----eee----ccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHH
Q 010317 131 GIGVGYSLMISPV----YTA----EISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVI 202 (513)
Q Consensus 131 G~~~g~~~~~~~~----~~~----e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~ 202 (513)
|++.+...+.... +.. |......|.+..+. +|..+++.+...+. ....|+..+ +.++..++.
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~------lG~~ig~~l~g~l~---~~~~~~~f~-~~~~~~~~~ 172 (418)
T TIGR00889 103 SLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT------IGFIAAMWAVSLLD---IELSNIQLY-ITAGSSALL 172 (418)
T ss_pred HHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh------HHHHHHHHHHHHhc---ccchhHHHH-HHHHHHHHH
Confidence 9876654443322 222 32333344555442 34444444443332 122465444 444444444
Q ss_pred HHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCC
Q 010317 203 GVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKP 282 (513)
Q Consensus 203 ~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (513)
.+..+++||+|+- +++.+ .+....... ..++..+.+
T Consensus 173 ~~~~~~~~e~~~~---~~~~~-----------~~~~~~~~~------------------------------~~~~~~k~~ 208 (418)
T TIGR00889 173 GVFALTLPDIPVA---KSTAK-----------MSIKVMLGL------------------------------DAFILFKNK 208 (418)
T ss_pred HHHHhcCCCCCCC---ccccc-----------cCHHHHhhh------------------------------hHHHHhcCC
Confidence 4456678888630 00000 000000000 001111110
Q ss_pred ChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCc-------hhHHHHHHHHhHHHHHHHHHHHHHhhccCCh
Q 010317 283 TPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRK-------PVLFGINVVMGLAKTFFVVLSALHLDKFGRR 355 (513)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr 355 (513)
.+....+..+.. + ........+.|.++.+.+.+.. ........+..+...++.+..+++.||+|||
T Consensus 209 --~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r 281 (418)
T TIGR00889 209 --RMAIFFFFSMLL----G-APLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK 281 (418)
T ss_pred --CeeeHHHHHHHH----H-hHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 111111111111 1 1111122334555554432221 1112233445566777788899999999999
Q ss_pred hHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHH-HH
Q 010317 356 PLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAIS-VN 434 (513)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~-~~ 434 (513)
+++..+.+...+...++... .......... .+.......... ...+....+++|.+|++.|+++.|+.+. ..
T Consensus 282 ~~l~~~~~~~~v~~~l~~~~----~~~~~~~~~l--~l~~~l~g~~~~-~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~ 354 (418)
T TIGR00889 282 KVMLLSLVAWALRFGFFAYG----DPEYFGYALL--FLSMIVYGCAFD-FFNISGSVFVEKEVPVHIRASAQGLFTLMCN 354 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHc----CcchhhHHHH--HHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 99888765554443333221 1011111111 111111111111 1122335678999999999999999974 45
Q ss_pred HHHHHHHHHHHHHHHHhc------ccchhHHHHHHHHHHHHHhhheecccCCCC
Q 010317 435 RLVSGVISMTFLSISHRL------SFGGTFFLLAGITTVGTIFFYVFLPETKGK 482 (513)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 482 (513)
.++..+.+.....+.+.. ++...|.+.+++.+++++..++++||++++
T Consensus 355 ~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 355 GFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 555556666666665553 356678888888888888888888887554
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-22 Score=194.21 Aligned_cols=165 Identities=15% Similarity=0.147 Sum_probs=144.2
Q ss_pred ccccchhhHHHHhhhCCCchh-HHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Q 010317 48 IGVMSGAVLYIKEDLEITEVQ-VEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVG 126 (513)
Q Consensus 48 ~~~~~~~~~~~~~~~~~s~~~-~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 126 (513)
+.+.+.+.|++.+|+|+|++| .+.+.++++.+|++++++.|+++||+|-|+++.++++.|++.+++.++++++..+.+.
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~ 121 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLM 121 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhH---HHHHHH
Q 010317 127 RMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAV---PAAVIG 203 (513)
Q Consensus 127 R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~---~~~i~~ 203 (513)
|++.|++.|+.. ....|+..++|+++|+++++....+..+|.++++.+...+. .++||+++.+..+ ...+..
T Consensus 122 R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~----s~gWr~y~~Ln~Isl~s~~~a~ 196 (511)
T TIGR00806 122 EVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV----TLGWISYSTLNIISLVFMTFSV 196 (511)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCchhHHHHHHHHHHHHHHHH
Confidence 999999999999 88899999999999999999999999999888877765533 4589987665433 233444
Q ss_pred HHHhccCCCchhHH
Q 010317 204 VGVLIMPESPRWLV 217 (513)
Q Consensus 204 ~~~~~lpEsp~~l~ 217 (513)
+..+++|..+|-+.
T Consensus 197 ~~a~~LP~~~~sl~ 210 (511)
T TIGR00806 197 FLALFLKRPKRSLF 210 (511)
T ss_pred HHHHhCCCCchhhh
Confidence 45678885555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-20 Score=185.99 Aligned_cols=152 Identities=17% Similarity=0.188 Sum_probs=131.9
Q ss_pred HHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcc
Q 010317 56 LYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVG 135 (513)
Q Consensus 56 ~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g 135 (513)
+++++++|.+..+.++..+...+...+.+++.|+++||+|||+++..+.++..++.....+.++++.+++.|++.|++.+
T Consensus 35 ~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~ 114 (400)
T PRK11646 35 IRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGT 114 (400)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHH-HhccCC
Q 010317 136 YSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVG-VLIMPE 211 (513)
Q Consensus 136 ~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~-~~~lpE 211 (513)
...+....++.|+.|+++|+++.+.......+|..+++.++..+. ..+||+.|++.++..++..+. .+.+||
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~----~~g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 115 LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL----QYDFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 777777788999999999999999999999999888887765554 348999999877765544332 344555
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=213.48 Aligned_cols=331 Identities=13% Similarity=-0.013 Sum_probs=200.5
Q ss_pred hhhHHHHhhhCCCch--hHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHH---HhcCcHHHHHHHH
Q 010317 53 GAVLYIKEDLEITEV--QVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAM---GLAPNYPFLIVGR 127 (513)
Q Consensus 53 ~~~~~~~~~~~~s~~--~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~---~~~~~~~~l~~~R 127 (513)
...+.+..+++.+.+ ..+++.+++.+++.++++++|+++||+|||++++++.++..++.++. .+.++++.+++.|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 110 (1146)
T PRK08633 31 LIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVT 110 (1146)
T ss_pred HHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 344456666666544 46899999999999999999999999999999999987766665543 4457899999999
Q ss_pred HHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCC-----CC-CcchHHHHHhhhHH-HH
Q 010317 128 MIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGL-----PG-NINWRIMLGLAAVP-AA 200 (513)
Q Consensus 128 ~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~-----~~-~~~Wr~~~~~~~~~-~~ 200 (513)
++.|++.+...+....+++|++|+++|++++++.+....+|.++++.++..+... .. ..+|++.+.+..+. .+
T Consensus 111 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (1146)
T PRK08633 111 FLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAV 190 (1146)
T ss_pred HHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888876655422 00 12345544443333 33
Q ss_pred HHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhc
Q 010317 201 VIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLIL 280 (513)
Q Consensus 201 i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (513)
+..+..+.+||+|.+...+.+.+ ......... ..++.++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~----------------------------~~~~~l~~ 230 (1146)
T PRK08633 191 LGLIFAYRLPKVPAAAPEVFDKK------------KYLFPKLLW----------------------------RNLKLLRS 230 (1146)
T ss_pred HHHHHHhcCcCCCCCCccccccc------------ccccHHHHH----------------------------HHHHHHhc
Confidence 33444566788875321110000 000000000 00111111
Q ss_pred CCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHh-CCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHH
Q 010317 281 KPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKG-AGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLL 359 (513)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~ 359 (513)
. +.++...+... ...........+.|.++.. .+.+.......+....+++..++.++.+++.||.++|+.+.
T Consensus 231 ~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~ 303 (1146)
T PRK08633 231 D--RVLWLAIIGLS-----YFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVP 303 (1146)
T ss_pred C--cHHHHHHHHHH-----HHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchh
Confidence 1 11111111111 1111122334455666643 34333212233445566777888999999999999988776
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHH
Q 010317 360 LGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSG 439 (513)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~ 439 (513)
++.++..++.+++... ...+......+. + +++.....+....+..+..|++.|+++.|+.+.+.+++..
T Consensus 304 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~-g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~ 372 (1146)
T PRK08633 304 LGALGLALSLFLLPTA-------PSLASVLVLFFL---F-GFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGML 372 (1146)
T ss_pred HHHHHHHHHHHHHHHh-------hhHHHHHHHHHH---H-HHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHH
Confidence 6655444443333321 111111111111 1 1111111223456778999999999999999988887554
Q ss_pred HH
Q 010317 440 VI 441 (513)
Q Consensus 440 ~~ 441 (513)
+.
T Consensus 373 ~~ 374 (1146)
T PRK08633 373 LF 374 (1146)
T ss_pred HH
Confidence 33
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-19 Score=181.38 Aligned_cols=155 Identities=17% Similarity=0.284 Sum_probs=120.9
Q ss_pred hcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Q 010317 46 YDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIV 125 (513)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 125 (513)
+.....+..++++..|+|-+ ....|+.+...++.+++.++.|+++|.||||..++.+.++..+++++++-++|...+++
T Consensus 58 ~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~ia 136 (599)
T PF06609_consen 58 FVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIA 136 (599)
T ss_pred HHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHH
Confidence 33444466778899999965 67788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHH
Q 010317 126 GRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVG 205 (513)
Q Consensus 126 ~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~ 205 (513)
+-.+.|+|.|..... ...++|..|.|+|+...++...........++.++..+ ..+.+|||.|++.++...+..+.
T Consensus 137 g~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~---~~~~~WRw~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 137 GMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLF---AAHSGWRWIFYIFIIWSGIALVL 212 (599)
T ss_pred HHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHh---ccCCCcchHHHHHHHHHHHHHHH
Confidence 999999998877654 45589999999998766654443333332333333222 23458999999987765554443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-20 Score=189.68 Aligned_cols=172 Identities=17% Similarity=0.139 Sum_probs=134.9
Q ss_pred ccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhc------CcHHHH
Q 010317 50 VMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLA------PNYPFL 123 (513)
Q Consensus 50 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~------~~~~~l 123 (513)
..+...+.+++++|++.++.+++.++. ..+.+++++.|+++||+|||+++.++.+++.++.++++++ .+++.+
T Consensus 45 ~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l 123 (591)
T PTZ00207 45 AFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRL 123 (591)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHH
Confidence 344566789999999999999988763 4556788899999999999999999999999999999987 689999
Q ss_pred HHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHH-HHHHHHHhcCCCCCcchHHHHHhhhHHHHHH
Q 010317 124 IVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILS-GYVFNYALSGLPGNINWRIMLGLAAVPAAVI 202 (513)
Q Consensus 124 ~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~ 202 (513)
++.|++.|++.+...+....++.+++| ++||++.++...+..+|..+ +++....+. .+|++.|++.++.+++.
T Consensus 124 ~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-----~~~~~~fl~l~vl~~vv 197 (591)
T PTZ00207 124 SVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-----DNTSAYFFFLMSFALVV 197 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHH
Confidence 999999999998887777888899987 78999999999998888864 443333332 26888888766665544
Q ss_pred HHH---HhccCCCchhHHhcCCHHHHHHH
Q 010317 203 GVG---VLIMPESPRWLVMKSRYDEAKRV 228 (513)
Q Consensus 203 ~~~---~~~lpEsp~~l~~~~~~~~a~~~ 228 (513)
.+. +...||+|+|...++|.+|+++.
T Consensus 198 ~ll~~~~vr~p~~~~~~~~~~~~~~~~~~ 226 (591)
T PTZ00207 198 GILAIVFMRLPPFHLTGYQEKHLDEEEKA 226 (591)
T ss_pred HHHHHhheeCCcchhhcccccCCCHHHHH
Confidence 443 23357778887666655555544
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.4e-20 Score=183.37 Aligned_cols=170 Identities=14% Similarity=0.075 Sum_probs=134.9
Q ss_pred HHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhcccccccc-----CchH-HHHHHHHHHHHHHHHH
Q 010317 41 SILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYI-----GRRY-TIVVAAATFLVGALAM 114 (513)
Q Consensus 41 ~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~-----GRr~-~~~~~~~~~~i~~~~~ 114 (513)
++..|+.......+.|.+-++-|++.++.|++..+... .+..+++|+++||+ |||+ ++.++.++.+++....
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l 85 (402)
T PRK11902 8 GFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAM 85 (402)
T ss_pred HHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 55566666777788888878889999999999776665 58999999999999 8875 7888888888887777
Q ss_pred Hhc---CcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Q 010317 115 GLA---PNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIM 191 (513)
Q Consensus 115 ~~~---~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~ 191 (513)
++. .+++.+.+..++.++..+...+...+++.|+.|+++|+++.++....+.+|.+++..+...+.. ...+||..
T Consensus 86 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~--~~~gw~~~ 163 (402)
T PRK11902 86 AFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD--RVLGWGNT 163 (402)
T ss_pred HhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh--cccCHHHH
Confidence 776 3467778888888888887778888999999999999999999988888888887666544432 12489999
Q ss_pred HHhhhHHHHHHHHHHhccCCCch
Q 010317 192 LGLAAVPAAVIGVGVLIMPESPR 214 (513)
Q Consensus 192 ~~~~~~~~~i~~~~~~~lpEsp~ 214 (513)
|++.++..++..+..+++||+++
T Consensus 164 f~i~a~~~l~~~l~~~~~~e~~~ 186 (402)
T PRK11902 164 YLLMAGLMLAGALTTLWAPEPEV 186 (402)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcc
Confidence 99988776665555667788754
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-21 Score=202.34 Aligned_cols=175 Identities=13% Similarity=0.221 Sum_probs=147.2
Q ss_pred HHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhc
Q 010317 38 SINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLA 117 (513)
Q Consensus 38 ~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~ 117 (513)
.+..+..+.+.+..+..++.++++|++++++.|++.+.+.++++++.++.+++.||+|||+++.+++++++++++++++.
T Consensus 39 ~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alp 118 (633)
T TIGR00805 39 TCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLP 118 (633)
T ss_pred HHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhCh
Confidence 34555566677888889999999999999999999999999999999999999999999999999999999999988765
Q ss_pred C---------------------------------------------------cHHHHHHHHHHhhhhcccccccccceee
Q 010317 118 P---------------------------------------------------NYPFLIVGRMIAGIGVGYSLMISPVYTA 146 (513)
Q Consensus 118 ~---------------------------------------------------~~~~l~~~R~l~G~~~g~~~~~~~~~~~ 146 (513)
. .+..++++|+++|+|.+...+....|+.
T Consensus 119 hf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~ 198 (633)
T TIGR00805 119 HFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYID 198 (633)
T ss_pred HHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhh
Confidence 2 2456889999999999999999999999
Q ss_pred ccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCC-----------------Cc--chHHHHHhhhHHHHHHHHHHh
Q 010317 147 EISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPG-----------------NI--NWRIMLGLAAVPAAVIGVGVL 207 (513)
Q Consensus 147 e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-----------------~~--~Wr~~~~~~~~~~~i~~~~~~ 207 (513)
|++|+++|+++.++.+....+|..++++++..+..... +| +||..|++.++..++..+.++
T Consensus 199 d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~ 278 (633)
T TIGR00805 199 DFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF 278 (633)
T ss_pred ccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888887655432110 11 377778888877777666666
Q ss_pred ccCCC
Q 010317 208 IMPES 212 (513)
Q Consensus 208 ~lpEs 212 (513)
++||.
T Consensus 279 ~~p~~ 283 (633)
T TIGR00805 279 FFPKA 283 (633)
T ss_pred hCccc
Confidence 67765
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-20 Score=185.49 Aligned_cols=153 Identities=16% Similarity=0.154 Sum_probs=130.1
Q ss_pred HHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcc
Q 010317 56 LYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVG 135 (513)
Q Consensus 56 ~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g 135 (513)
+++++++|.+..+.++..+++.++..+++++.|+++||+|||+++.++.++..++.+..+++++++.++++|++.|.+.+
T Consensus 32 ~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 111 (395)
T PRK10054 32 IYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYS 111 (395)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred cccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHH-HhccCCC
Q 010317 136 YSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVG-VLIMPES 212 (513)
Q Consensus 136 ~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~-~~~lpEs 212 (513)
...+....+..|..|+++|++..++......+|..+++.++..+. ..+||..|++.++..++..+. .+++||+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~----~~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 112 VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV----MQSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 767777788899999999999999988888889888887766554 248999999877766554433 3445554
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-19 Score=182.59 Aligned_cols=145 Identities=14% Similarity=0.175 Sum_probs=123.7
Q ss_pred hhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccc-cCchHHHHHHHHHHHHHHHHHHhcCcHHH-HHHHHHHh
Q 010317 53 GAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDY-IGRRYTIVVAAATFLVGALAMGLAPNYPF-LIVGRMIA 130 (513)
Q Consensus 53 ~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr-~GRr~~~~~~~~~~~i~~~~~~~~~~~~~-l~~~R~l~ 130 (513)
....++++++|.+.++.+++.+.+.....+..+++|+++|| +|||+++.++.+++.++++.++++++... +.++|.++
T Consensus 36 ~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~ 115 (489)
T PRK10207 36 ILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTI 115 (489)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 34457889999999999999999998888888999999999 99999999999999999999999877554 55899999
Q ss_pred hhhcccccccccceeeccCCCc--ccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHH
Q 010317 131 GIGVGYSLMISPVYTAEISPTM--KRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAA 200 (513)
Q Consensus 131 G~~~g~~~~~~~~~~~e~~p~~--~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~ 200 (513)
|+|.|...+....++.|.+|++ +|+...+.+....++|..+++.++..+. .+.|||+.|++.++..+
T Consensus 116 ~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~---~~~gw~~~F~i~~i~~~ 184 (489)
T PRK10207 116 AVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA---DKFGYSVTYNLCGAGLI 184 (489)
T ss_pred HhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH---HhhChHHHHHHHHHHHH
Confidence 9999999988899999999887 4577888888899999998887766654 34589999988654333
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=206.10 Aligned_cols=370 Identities=12% Similarity=-0.025 Sum_probs=211.9
Q ss_pred HHHHHHHhhcccccchhhH-HHHhhhCCCch-hHHHHHHHHHHHHHHHHhhccccccccCchHHHHH---HHHHHHHHHH
Q 010317 38 SINSILLGYDIGVMSGAVL-YIKEDLEITEV-QVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVV---AAATFLVGAL 112 (513)
Q Consensus 38 ~~~~~~~g~~~~~~~~~~~-~~~~~~~~s~~-~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~---~~~~~~i~~~ 112 (513)
++..+.++++...+..... .+..+.+.+.. ..++..+++.+.+.+.+++.|+++||+|||+++.. ..+...+...
T Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~ 100 (1140)
T PRK06814 21 FFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAI 100 (1140)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333322 34444544433 46788889999999999999999999999997643 2233333334
Q ss_pred HHHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Q 010317 113 AMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIML 192 (513)
Q Consensus 113 ~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 192 (513)
.....++++.++++|+++|++.+...+...+++.|++|+++|++++++.+....+|.++++.++..+.. ..+|++.|
T Consensus 101 ~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~---~~~~~~~~ 177 (1140)
T PRK06814 101 YGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI---SGNFVILV 177 (1140)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHH
Confidence 444458999999999999999999999999999999999999999999999999999999888776643 45899998
Q ss_pred HhhhHHHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCc
Q 010317 193 GLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGE 272 (513)
Q Consensus 193 ~~~~~~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (513)
+..++..++..+..+++||++.- .++... +.. ..++...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------------~~~---~~~~~~~------------------------ 216 (1140)
T PRK06814 178 ALLMGIAVLGWLASLFIPKTGNA--APDLKI------------DRN---IIRSTIT------------------------ 216 (1140)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCC--CCCCee------------ccc---hHHHHHH------------------------
Confidence 55555555555556667766420 000000 000 0000000
Q ss_pred chhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhC-CCCCchhHHHHHHHHhHHHHHHHHHHHHHhhc
Q 010317 273 GVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGA-GIHRKPVLFGINVVMGLAKTFFVVLSALHLDK 351 (513)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 351 (513)
.++...+ .+.++...+. .+........+..+.|.++++. +.+.. ....+....+++..++.++.+++.|+
T Consensus 217 -~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~g~~~~-~~g~~~~~~~~g~~ig~~~~g~l~~~ 287 (1140)
T PRK06814 217 -LLKYAKA--DKRIWLAILG-----ISWFWLVGAVVLSQLPLLAKETLGGDEN-VATLFLAVFSVGVAVGSFLASKLSEG 287 (1140)
T ss_pred -HHHHHhc--CchHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHcCCchH-HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0111111 1111111111 1111112233445677777653 33322 22224455667888899999999987
Q ss_pred cCChhHHHhhhHHHHHHHHHHHHHhhcc-------------CCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccC
Q 010317 352 FGRRPLLLLGSSGMVGSLLLLGIGSKIL-------------EGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIF 418 (513)
Q Consensus 352 ~grr~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~ 418 (513)
.++++.+..+.++..+..+.+++..... ......+...+..+... ++.....+....+..+..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~ 363 (1140)
T PRK06814 288 RITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLA----AAGGLYIVPLFAALQAWA 363 (1140)
T ss_pred ceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHH----HHHHHhHHHHHHHHHhhC
Confidence 7766654444333333222222210000 00011111111111111 111111123456778999
Q ss_pred ChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcccchhHHHHHHH
Q 010317 419 PLRLRAQGSALAISVNRLVSGVISMTFLSISH-RLSFGGTFFLLAGI 464 (513)
Q Consensus 419 P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 464 (513)
|.+.||++.|+.+.++.++..+.+.....+.. ..+....+++.+.+
T Consensus 364 p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 364 NPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred CcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 99999999999999888766666655544442 22333334444433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-18 Score=173.83 Aligned_cols=354 Identities=15% Similarity=0.111 Sum_probs=209.6
Q ss_pred hcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHH-HHHHHH-HHHHhcCcHHHH
Q 010317 46 YDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAA-TFLVGA-LAMGLAPNYPFL 123 (513)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~-~~~i~~-~~~~~~~~~~~l 123 (513)
+..+...+.+|.+.+|+|.+.++.+++.+++.+...++++++|+++||+|||......+. ...+.. ..+.++++++.+
T Consensus 18 ~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 97 (382)
T TIGR00902 18 CAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLL 97 (382)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 334556677788889999999999999999999999999999999999998544322221 111122 244567899999
Q ss_pred HHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHH
Q 010317 124 IVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIG 203 (513)
Q Consensus 124 ~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~ 203 (513)
++.|.++|.+.+...+....+..|. .++|++..+......++|.++++.+...+. +..|||+.|++..+...+..
T Consensus 98 ~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~---~~~g~~~~f~~~~~~~~~~~ 172 (382)
T TIGR00902 98 FIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLI---GMFDEQNILAILTAGLAFML 172 (382)
T ss_pred HHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHH---HHcChhHHHHHHHHHHHHHH
Confidence 9999999988888777777776554 477899999888888888888877654443 24699999887655433332
Q ss_pred HHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCC
Q 010317 204 VGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPT 283 (513)
Q Consensus 204 ~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (513)
+ .+.++|++. +++.++ +++ . ......+++++.
T Consensus 173 ~-~~~~~~~~~----~~~~~~-----------~~~-----------------~-------------~~~~~~~~~l~~-- 204 (382)
T TIGR00902 173 I-GFLIKPTIP----PKDAIP-----------EDE-----------------S-------------QGDSAFIALLKN-- 204 (382)
T ss_pred H-HHHcCCCCC----CCcccc-----------ccc-----------------c-------------ccchhHHHHHcC--
Confidence 2 333344321 000000 000 0 000011222221
Q ss_pred hhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhH
Q 010317 284 PAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSS 363 (513)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~ 363 (513)
|.. +......+....+......+.|.++++.+.+...... ......+...++..+.+++.||+|+|+.+..+.+
T Consensus 205 ~~~-----~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~-l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~ 278 (382)
T TIGR00902 205 PMN-----LRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGL-LWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAI 278 (382)
T ss_pred hHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHH-HHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHH
Confidence 111 1111111222223344445667777776554433332 3334666777778889999999999999887766
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHH-HHHHHHH
Q 010317 364 GMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNR-LVSGVIS 442 (513)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~-~~~~~~~ 442 (513)
.+....+.++.. ++.+...............+. +....|+++. |++.|+++.++.+.+.. ++..+.+
T Consensus 279 ~~~~~~~~~~~~-------~~~~~~~~~q~l~g~~~~~~~----~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~ 346 (382)
T TIGR00902 279 ACVGRWAIIGAI-------EAFPLIFLLQILHCGTFAVCH----LAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFT 346 (382)
T ss_pred HHHHHHHHHHhH-------hhHHHHHHHHHHHHHHHHHHH----HHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 665555444321 111211111111111111111 1234466777 99999999998775544 3334445
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHh
Q 010317 443 MTFLSISHRLSFGGTFFLLAGITTVGTIF 471 (513)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (513)
..-..+.+..+. ..+++.+.+.+++.+.
T Consensus 347 ~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 347 AFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 555566666653 5566667666655443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.3e-19 Score=178.18 Aligned_cols=357 Identities=18% Similarity=0.184 Sum_probs=186.7
Q ss_pred HHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHH---hcCc-----HHHHHHHH
Q 010317 56 LYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMG---LAPN-----YPFLIVGR 127 (513)
Q Consensus 56 ~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~---~~~~-----~~~l~~~R 127 (513)
.++++++|++..+.+++.+++.+++.+++++.|+++||+|||+++.++..+..+...... .++. .....+.+
T Consensus 35 ~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (420)
T PRK09528 35 IWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGG 114 (420)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999999999999999887776655433221 1111 11122233
Q ss_pred HHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHh
Q 010317 128 MIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVL 207 (513)
Q Consensus 128 ~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~ 207 (513)
++.|.+.....+....+. |.. .++|++..+.......+|..+++.++..+. ..+||+.|++.++..++..+..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~----~~~~~~~f~~~~~~~~~~~~~~~ 188 (420)
T PRK09528 115 IYLGFGFLAGAGAIEAYI-ERV-SRRSGFEYGRARMWGSLGWALCAFIAGILF----NINPQINFWLGSGSALILLVLLF 188 (420)
T ss_pred HHhhhhhccchhhhhhHH-HHH-HhhccccchhhHHhhhHHHHHHHHHHHHHH----hcCchHhHHHHHHHHHHHHHHHh
Confidence 333333222222222222 111 235666777666666777777766655443 23799999888877666555444
Q ss_pred cc-CCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhH
Q 010317 208 IM-PESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAV 286 (513)
Q Consensus 208 ~l-pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (513)
++ ||.++-. ++.++.. +++.+... ...++.+++ +.+
T Consensus 189 ~~~~~~~~~~---~~~~~~~---------~~~~~~~~-----------------------------~~~~~~l~~--~~~ 225 (420)
T PRK09528 189 FAKPDAPSTA---KVANALG---------ANASAVSL-----------------------------KDALALLKL--PKF 225 (420)
T ss_pred cccccccchh---hhccchh---------cccccccH-----------------------------HHHHHHccC--CCe
Confidence 43 3332200 0000000 00000000 001111111 111
Q ss_pred HHHHHHHHHHHHHhhhccchhhhccHHHHHHhCC--CCCchhH-HHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhH
Q 010317 287 RRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAG--IHRKPVL-FGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSS 363 (513)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~ 363 (513)
+...+........ ......+.|.++.+.. .+.+... .....+..+...++.++.+++.||+|||+.+..+..
T Consensus 226 ~~l~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 300 (420)
T PRK09528 226 WFLVLYVIGVACF-----YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGT 300 (420)
T ss_pred EeehHHHHHHHHH-----HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 1111111111111 1111112333332210 1111111 123333455667888899999999999998776655
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHH-HHHHHHHHHHHHH
Q 010317 364 GMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSAL-AISVNRLVSGVIS 442 (513)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~-~~~~~~~~~~~~~ 442 (513)
......++++. . .+.+................ .+....+.+|.+|++.|+++.+. .+....++..+.+
T Consensus 301 l~~~~~~l~~~-----~--~~~~~~~~~~~l~g~~~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~ 369 (420)
T PRK09528 301 IMAVRIIGSGF-----A--TGPLEVSILKLLHAFEVPFL----LVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLS 369 (420)
T ss_pred HHHHHHHHHHh-----c--ccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHH
Confidence 44443333332 1 11122111111111111111 11234567888999999987655 4555666666666
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHhhheecc
Q 010317 443 MTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLP 477 (513)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 477 (513)
.....+.+..++...|.+.+++.++..++..+.++
T Consensus 370 ~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 370 TLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777777777778888877777666555444443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-18 Score=173.10 Aligned_cols=358 Identities=15% Similarity=0.133 Sum_probs=198.6
Q ss_pred ccchhhH-HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHH---hcC-----cH
Q 010317 50 VMSGAVL-YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMG---LAP-----NY 120 (513)
Q Consensus 50 ~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~---~~~-----~~ 120 (513)
.+.+..| ++++++|.++.+.++..+++.++..+++++.|+++||+|||+.+..++....+...... +.+ ..
T Consensus 20 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (396)
T TIGR00882 20 AYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNIL 99 (396)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3344444 56778999999999999999999999999999999999999999988777765443221 222 23
Q ss_pred HHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHH
Q 010317 121 PFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAA 200 (513)
Q Consensus 121 ~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~ 200 (513)
..+++.|++.|++.+...+....+..|..+ +++...+.......+|..+++.++..+. ..+||+.|++.++..+
T Consensus 100 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~----~~~~~~~f~~~~~~~~ 173 (396)
T TIGR00882 100 VGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILF----SIDPQIVFWLGSGFAL 173 (396)
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhh----ccCchHHHHHHHHHHH
Confidence 345667888898888777777766666433 2333444444455666666666654432 3489999998877766
Q ss_pred HHHHHHhc-cCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhh
Q 010317 201 VIGVGVLI-MPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLI 279 (513)
Q Consensus 201 i~~~~~~~-lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (513)
+..+..+. .||+|.. ++..+ + .+. +. + + .+ ....++.+
T Consensus 174 ~~~~~~~~~~~~~~~~-------~~~~~---------------------~-~~~-~~---~----~---~~-~~~~~~~l 212 (396)
T TIGR00882 174 ILMLLLMFAKPKAPSS-------ATVAN---------------------A-LGA-NA---S----A---FS-LKLALELF 212 (396)
T ss_pred HHHHHHHHhCCCCchh-------hhhhc---------------------c-ccc-cc---C----C---CC-HHHHHHHH
Confidence 65544333 4444320 00000 0 000 00 0 0 00 00122222
Q ss_pred cCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCC--CCchhH-HHHHHHHhHHHHHHHHHHHHHhhccCChh
Q 010317 280 LKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGI--HRKPVL-FGINVVMGLAKTFFVVLSALHLDKFGRRP 356 (513)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~grr~ 356 (513)
+++ ......+.. +...........+.|.++..... ..+... ........+...++....+++.||+|||+
T Consensus 213 ~~~--~~~~~~l~~-----~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~ 285 (396)
T TIGR00882 213 RQR--KFWMFVLYV-----VGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN 285 (396)
T ss_pred cCC--cHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 221 111111111 11111112222234444443211 111111 12333455666777788899999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHH-HHHHHH
Q 010317 357 LLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSAL-AISVNR 435 (513)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~-~~~~~~ 435 (513)
.+.++...+......... . .+.+.......... ..... .......+..+.+|++.|+++.+. .+....
T Consensus 286 ~l~~~~~l~~l~~~~~~~-----~--~~~~~~~~~~~l~g---~~~~~-~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~ 354 (396)
T TIGR00882 286 ALLIAGTIMSVRIIGSSF-----A--TTALEVVILKMLHA---FEVPF-LLVGCFKYITSQFDVRLSATIYLIGFQFAKQ 354 (396)
T ss_pred hHHHHHHHHHHHHHHHHh-----c--CChHHHHHHHHHHH---HHHHH-HHHHHHHHHHHhCCcceEEEeehHHHHHHHH
Confidence 887765444333322221 1 11111111111111 11100 011223456788898988887766 456667
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhh
Q 010317 436 LVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFF 472 (513)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (513)
+++++.+.....+.+..++...|.+.+++.++.++..
T Consensus 355 lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 355 LAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 7677777777777777788888888877776665543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-18 Score=174.45 Aligned_cols=337 Identities=15% Similarity=0.131 Sum_probs=196.4
Q ss_pred hhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccc----cCc-hHHHHHHHHHHHHHHHHHHhcCc------HHH
Q 010317 54 AVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDY----IGR-RYTIVVAAATFLVGALAMGLAPN------YPF 122 (513)
Q Consensus 54 ~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr----~GR-r~~~~~~~~~~~i~~~~~~~~~~------~~~ 122 (513)
..+++.+++|+++.+.+++.++..+..++.+++.|+++|| +|| |+.++.+...++++..++.+.++ ...
T Consensus 22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY 101 (437)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 4457888999999999999999999999999999999998 687 45677888888888888877764 345
Q ss_pred HHHHHHHhhhhcccccccccceeeccC-CCcccccccchhhHHHHHHHHHHHHHHH-HhcCC---CCCcchHHHHHhhhH
Q 010317 123 LIVGRMIAGIGVGYSLMISPVYTAEIS-PTMKRGFLTSLPEVFIVLGILSGYVFNY-ALSGL---PGNINWRIMLGLAAV 197 (513)
Q Consensus 123 l~~~R~l~G~~~g~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~G~~~~~~~~~-~~~~~---~~~~~Wr~~~~~~~~ 197 (513)
+++.+++.+++.+.......++..|.. ++++|++..+..+.+..+|.+++..+.. ..... ....+||+.+.+.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~ 181 (437)
T TIGR00792 102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLAL 181 (437)
T ss_pred HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHH
Confidence 667788888887776666667888887 4678999998877777777665544322 22111 235689999988887
Q ss_pred HHHHHHHH-HhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhh
Q 010317 198 PAAVIGVG-VLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWK 276 (513)
Q Consensus 198 ~~~i~~~~-~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (513)
..++..+. .+..||.+.. +.++ +++ + ......++
T Consensus 182 l~~~~~~~~~~~~~e~~~~-----~~~~-----------~~~-~----------------------------~~~~~~~~ 216 (437)
T TIGR00792 182 IGVVSLIICFFGTKERYSE-----IPKN-----------IEK-K----------------------------LSLKQIFK 216 (437)
T ss_pred HHHHHHHHHHcCCEecCCC-----CCcc-----------ccc-C----------------------------CCHHHHHH
Confidence 76655543 4556665410 0000 000 0 00000122
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChh
Q 010317 277 DLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRP 356 (513)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~ 356 (513)
.+++ .+.++...... +....+.+....+.+.+.+.. .+.......+..+..+...++.++.+++.||+|||+
T Consensus 217 ~l~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~ 288 (437)
T TIGR00792 217 ALFK--NDQLLILCLAY-----LFYNLAFNIKNGVQVYYFTYV-LGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI 288 (437)
T ss_pred HHhC--CHHHHHHHHHH-----HHHHHHHHHHcchhheeEeee-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 2222 11222211111 111111122222222222211 122222222344456777888899999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCC-------hhhHhhHHHH
Q 010317 357 LLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFP-------LRLRAQGSAL 429 (513)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P-------~~~R~~~~g~ 429 (513)
.+..+...+....+.+... . .+.+.......... +......+..+.+.+|..| ++.++...|+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 358 (437)
T TIGR00792 289 LFAGGILLMVLGYLIFFFA-----G-SNLPLILVLIILAG----FGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSV 358 (437)
T ss_pred HHHHHHHHHHHHHHHHHHc-----c-hhHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHH
Confidence 8877765444443332211 1 11111111111111 1111112234556666654 5567888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 010317 430 AISVNRLVSGVISMTFLSISHRLS 453 (513)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~ 453 (513)
.+.+.++++.+.+.....+.+..+
T Consensus 359 ~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 359 RTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999888877777766666554433
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=166.91 Aligned_cols=346 Identities=16% Similarity=0.159 Sum_probs=197.5
Q ss_pred cccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCch----HHHHHHHHHHHHHHHHHHhcCcHHHHH
Q 010317 49 GVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRR----YTIVVAAATFLVGALAMGLAPNYPFLI 124 (513)
Q Consensus 49 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr----~~~~~~~~~~~i~~~~~~~~~~~~~l~ 124 (513)
+.+.+.+|.+.+|+|.+..+.++..+++.++..++++++|+++||+||| +.+.+...+. ........++++.++
T Consensus 21 g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~ 98 (382)
T PRK11128 21 GVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLF 98 (382)
T ss_pred HHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHH
Confidence 4556677777888999999999999999999999999999999999994 3333222222 223344568899999
Q ss_pred HHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHH
Q 010317 125 VGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGV 204 (513)
Q Consensus 125 ~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~ 204 (513)
+.|++.|++.+...+...++..++ .++|++..+.......+|..+++.++..+. ++.+||..|++.++..++..+
T Consensus 99 i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~---~~~g~~~~f~~~~~~~~~~~~ 173 (382)
T PRK11128 99 VAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLV---SWFGEQAILWILTAGVASMLL 173 (382)
T ss_pred HHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHH---HHcChhHHHHHHHHHHHHHHH
Confidence 999999999888777766666665 456788888877778888888887766554 245899999877765444443
Q ss_pred HHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCCh
Q 010317 205 GVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTP 284 (513)
Q Consensus 205 ~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (513)
..++.||.++ +++.++ + .+ .....+++.+++ |
T Consensus 174 ~~~~~~~~~~----~~~~~~------------~--------------------~~----------~~~~~~~~i~~~--~ 205 (382)
T PRK11128 174 GQLLRPTIMP----QGESRQ------------Q--------------------ES----------AGWPAWKALLKE--P 205 (382)
T ss_pred HHHccCCCCC----cccccc------------c--------------------cc----------cccchHHHHHcC--h
Confidence 3334454321 000000 0 00 000112333321 1
Q ss_pred hHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHH
Q 010317 285 AVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSG 364 (513)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~ 364 (513)
........ .+...........+.|.++++.+.+...... ......+...+..++.+++.||+|+|+.+..+...
T Consensus 206 ~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~-~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~ 279 (382)
T PRK11128 206 TVWRFLLC-----VSLLQGSHAAYYGFSAIYWQAAGYSASTIGY-LWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAIC 279 (382)
T ss_pred hHHHHHHH-----HHHHHHHhHhHHHHHHHHHHHCCCCHhHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 11111111 1111112223334556666665544332222 22344556677778899999999999998776655
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHH-HHHHH
Q 010317 365 MVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVS-GVISM 443 (513)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~-~~~~~ 443 (513)
..+..+.++. .+..+......+... ..+... .+....+..+. |++.+++..++.+.+.+..+ .+.+.
T Consensus 280 ~~~~~~~~~~-------~~~~~~~~~~~~l~g---~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~ 347 (382)
T PRK11128 280 GVVRWGLMGS-------TTALPWLIVIQILHC---GTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTV 347 (382)
T ss_pred HHHHHHHHHh-------hhhHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433321 111121111111111 111111 11223445566 55556888888776654434 44555
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHH
Q 010317 444 TFLSISHRLSFGGTFFLLAGITTVG 468 (513)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (513)
....+.+..+. ..++..+++.+++
T Consensus 348 i~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T PRK11128 348 LSGFLYQHLGA-GVFWVMALVALPA 371 (382)
T ss_pred HHHHHHHhccH-HHHHHHHHHHHHH
Confidence 55666666553 3455555554443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-17 Score=169.79 Aligned_cols=147 Identities=14% Similarity=0.174 Sum_probs=126.9
Q ss_pred HHHhh--hCCCchhHHHHHHHHHHHHHHHHhhccccccc-cCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhh
Q 010317 57 YIKED--LEITEVQVEVLVGILNVFSLIGSLASGKTSDY-IGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIG 133 (513)
Q Consensus 57 ~~~~~--~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr-~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~ 133 (513)
+++++ +|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++++++..+.++++++..+.++|++.|++
T Consensus 36 yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g 115 (475)
T TIGR00924 36 YLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVG 115 (475)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhc
Confidence 56666 99999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred cccccccccceeeccCCCcc---cccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHH
Q 010317 134 VGYSLMISPVYTAEISPTMK---RGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGV 206 (513)
Q Consensus 134 ~g~~~~~~~~~~~e~~p~~~---R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~ 206 (513)
.|...+....+++|++|+++ |+.+.++.+...++|..+++.+...+. ++.+||+.|++.++..++..+.+
T Consensus 116 ~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~---~~~g~~~~f~~~~~~~~~~~l~~ 188 (475)
T TIGR00924 116 SGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA---ENYGYHVGFNLAAVGMVIGLLTF 188 (475)
T ss_pred cccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH---HhcChHHHHHHHHHHHHHHHHHH
Confidence 99988888899999998764 888889988889999999887765554 24589999988775544443333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-18 Score=175.87 Aligned_cols=419 Identities=15% Similarity=0.140 Sum_probs=250.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHH
Q 010317 29 YAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFL 108 (513)
Q Consensus 29 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~ 108 (513)
+-|.+++..++..+...--....+...+.++++++-+.++.+|+.++....+.+..++.+.+.||||.|.+.+++.++..
T Consensus 43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 43 WGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAA 122 (509)
T ss_pred eeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHH
Confidence 34555555545444333335566677889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcHHHHH-HHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHH-HHHHhcCCCCCc
Q 010317 109 VGALAMGLAPNYPFLI-VGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYV-FNYALSGLPGNI 186 (513)
Q Consensus 109 i~~~~~~~~~~~~~l~-~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~ 186 (513)
++.++++|+++++.++ ..=++.|+|.|..+..+...+..++ .|+|+.++++......+|..+-+. ..+.+ .+.
T Consensus 123 ~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~----~~~ 197 (509)
T KOG2504|consen 123 LGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLL----SKY 197 (509)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHH----HHh
Confidence 9999999999997655 4578889999999988888888665 578999999887777776554433 33333 356
Q ss_pred chHHHHHhhhHHHHHHHHH-HhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCC----CC
Q 010317 187 NWRIMLGLAAVPAAVIGVG-VLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPD----DD 261 (513)
Q Consensus 187 ~Wr~~~~~~~~~~~i~~~~-~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 261 (513)
|||+.+++.+...+-.+.. ...-|.+++- .+. +++.... .....+.... +......++.....+ +.
T Consensus 198 G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~--~~~--~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 268 (509)
T KOG2504|consen 198 GWRGALLIFGGISLNVLVAGALLRPLSPPK--KPN--EEKDLRN---SAASVESTPK--PVELRISERDSGLKKLSLSNL 268 (509)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCCCcCC--Cch--hhhhhcc---cccccccccc--ccccccccCCCCCCcccccch
Confidence 9999888766665444443 3444544321 111 1111000 0000000000 000000000000000 00
Q ss_pred ----CCCCCCCccC-cchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhH
Q 010317 262 ----QGPPKGNFTG-EGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGL 336 (513)
Q Consensus 262 ----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 336 (513)
..+++.+... +.... ....+.++.+.++...+...+...+++....++|.+.++.+...+... .+..+.++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~---~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa-~l~Siigi 344 (509)
T KOG2504|consen 269 ATLKRGPDKWRNSPLQAFLS---MLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAA-FLLSIIGV 344 (509)
T ss_pred hhhhhCCccccccchhhhhh---hhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhH-HHHHHHHH
Confidence 0000000000 00110 000123344445555555555666677777788888887776655444 36677888
Q ss_pred HHHHHHHHHHHHhhccCChhHH--HhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeee
Q 010317 337 AKTFFVVLSALHLDKFGRRPLL--LLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYS 414 (513)
Q Consensus 337 ~~~~~~~~~~~~~d~~grr~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (513)
...++.++.|++.|+...|+.. .++.+++.++.+.+.. ....+. ++..+.+.++......+.....+
T Consensus 345 ~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~-------~~~~~~----l~~~~~~fG~~~g~~~~l~~~i~ 413 (509)
T KOG2504|consen 345 SDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPF-------ATTYVG----LIVFSILFGFCVGSFSSLTPVIL 413 (509)
T ss_pred hhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH-------hccHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998844333 3322222222211111 111111 11112222222222223444677
Q ss_pred cccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHhhheecc
Q 010317 415 SEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLS-FGGTFFLLAGITTVGTIFFYVFLP 477 (513)
Q Consensus 415 ~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p 477 (513)
.|+.+.+.=+.+.|+...+.-+...+++.....+.+..+ |...|+..+...+++++.. +..|
T Consensus 414 ~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~-~~~~ 476 (509)
T KOG2504|consen 414 VDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLL-LILR 476 (509)
T ss_pred HHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHH-HHhH
Confidence 899999998999999988888766666666555554443 6677888887777766543 4444
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-16 Score=157.79 Aligned_cols=372 Identities=13% Similarity=0.022 Sum_probs=204.9
Q ss_pred HHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHH--HHHHHHHHHHHHhhc-cccccccCchHHHHHHHHHHHH-HH
Q 010317 36 LASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVL--VGILNVFSLIGSLAS-GKTSDYIGRRYTIVVAAATFLV-GA 111 (513)
Q Consensus 36 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~--~s~~~~g~~ig~~~~-g~l~dr~GRr~~~~~~~~~~~i-~~ 111 (513)
.....++..|...+...+..|.+.+|.|.+.++.|+. .++..+...+.+++. ++.+||+|||+..++.+.+... ..
T Consensus 5 ~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~ 84 (390)
T TIGR02718 5 TLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACL 84 (390)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHH
Confidence 3344567788888888899999999999999999997 356677777777777 5589999999997666644322 22
Q ss_pred HHHH-h--cCc-HHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcc
Q 010317 112 LAMG-L--APN-YPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNIN 187 (513)
Q Consensus 112 ~~~~-~--~~~-~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 187 (513)
...+ + ..+ ...++..-++.++..+...+....+..|..+.++++...+.......+|.+++......+. +..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~---~~~g 161 (390)
T TIGR02718 85 ASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLF---GKFG 161 (390)
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHhC
Confidence 2222 2 222 2233444445555556565666667788888888888877777777777777765433322 2458
Q ss_pred hHHHHHhhhHHHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Q 010317 188 WRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKG 267 (513)
Q Consensus 188 Wr~~~~~~~~~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (513)
||..|++.++..++..+..++++|++. ++.++ +++...
T Consensus 162 w~~~f~~~a~l~~~~~~~~~~~~~~~~-----~~~~~-----------~~~~~~-------------------------- 199 (390)
T TIGR02718 162 QRPAFLLVACVPLASLVCVLWLKDRAV-----ASPEA-----------PLARRA-------------------------- 199 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCc-----Ccccc-----------chhhHH--------------------------
Confidence 999999988776655554444443321 00000 000000
Q ss_pred CccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHH
Q 010317 268 NFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSAL 347 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (513)
..++.++. |..+...... +....+......+.+.++++.+.+.+...............++.++.++
T Consensus 200 ------~~~~~l~~--~~~~~~~~~~-----~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~ 266 (390)
T TIGR02718 200 ------SLFRFFRR--PLAWSLLALA-----LLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAW 266 (390)
T ss_pred ------HHHHHHcC--cCHHHHHHHH-----HHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 01111111 1111111111 1111111222234556666665444332221112222355666788999
Q ss_pred HhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCCh-hhHhhH
Q 010317 348 HLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPL-RLRAQG 426 (513)
Q Consensus 348 ~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~-~~R~~~ 426 (513)
+.||+|+|+.+..+........+....... ........... .......+.. ... .+..+.+..+..++ +.|++.
T Consensus 267 l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~--g~~-~~~~~~~~~~~~~~~~~~g~~ 341 (390)
T TIGR02718 267 LVRRAGLWRTFILGVGLAGSLALLWFAQAA-FWLAPGIAVAW-SCSAFGSLIT--GIT-SVAIYTAFMRFAGDGDQAGTD 341 (390)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-cccCCcHHHHH-HHHHHHHHHH--HHH-HHHHHHHHHHHhCcccchHHH
Confidence 999999999887655433222111111111 00011111111 1111100000 000 01122233344454 889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Q 010317 427 SALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTI 470 (513)
Q Consensus 427 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (513)
.++.+++.+++..+.+.....+.+..++...|.+.+.+.+++.+
T Consensus 342 ~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 342 VTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 99999999988878777777777777777777777666655543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-15 Score=157.36 Aligned_cols=145 Identities=13% Similarity=0.170 Sum_probs=116.8
Q ss_pred hhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccc-cCchHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHhh
Q 010317 54 AVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDY-IGRRYTIVVAAATFLVGALAMGLAP-NYPFLIVGRMIAG 131 (513)
Q Consensus 54 ~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr-~GRr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~R~l~G 131 (513)
...++++++|+++++.++..+.+........+++|+++|| +|||+++.++.++..++..++++++ +...+.++|+++|
T Consensus 44 l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~g 123 (500)
T PRK09584 44 MAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIA 123 (500)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3457889999999998888887776666666789999999 5999999999999999999998875 5667778899999
Q ss_pred hhcccccccccceeeccCCCcc--cccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHH
Q 010317 132 IGVGYSLMISPVYTAEISPTMK--RGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAV 201 (513)
Q Consensus 132 ~~~g~~~~~~~~~~~e~~p~~~--R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i 201 (513)
++.|...+....++.|++|+++ |....++++.+.++|..+++.+...+. ++.|||+.|++.++...+
T Consensus 124 ig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~---~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 124 VGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA---AKYGWSVAFALSVVGMLI 192 (500)
T ss_pred HhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH---HhhCHHHHHHHHHHHHHH
Confidence 9999888888889999998654 445677777788889888877765554 245899999987654443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=154.91 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcccccccccceeec
Q 010317 68 QVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAE 147 (513)
Q Consensus 68 ~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e 147 (513)
-.|.+.|.|.++..+.++.+|.++||+|||++++++.+..++...+.+++.||..++++|++.|+.-|.. .+..++++|
T Consensus 69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~rAiisd 147 (451)
T KOG2615|consen 69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIRAIISD 147 (451)
T ss_pred hhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHHHHHHh
Confidence 3678999999999999999999999999999999999999999999999999977777899999988765 456689999
Q ss_pred cCCCcccccccchhhHHHHHHHHHHHHHHHHhcC
Q 010317 148 ISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSG 181 (513)
Q Consensus 148 ~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~ 181 (513)
+.++++|++.++..+..+.+|.++|+.++..+..
T Consensus 148 V~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 148 VVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 9999999999999999999999999988766653
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-16 Score=149.89 Aligned_cols=357 Identities=14% Similarity=0.145 Sum_probs=221.9
Q ss_pred HHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHH---hc
Q 010317 41 SILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMG---LA 117 (513)
Q Consensus 41 ~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~---~~ 117 (513)
.++-|+......+.+|++++.+++|..|.+++...++.||.+++++.+++.+|+|+|+.++.++.++++++.+.. -.
T Consensus 22 Ffl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~ 101 (422)
T COG0738 22 FFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASS 101 (422)
T ss_pred HHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344455666677889999999999999999999999999999999999999999999999999999999998874 66
Q ss_pred CcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcC------CC--------
Q 010317 118 PNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSG------LP-------- 183 (513)
Q Consensus 118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~------~~-------- 183 (513)
.+|..++++-|+.|.|.+...+....|++.+.|++...+-+.+.+.++.+|..+++.++..+.. +.
T Consensus 102 ~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~ 181 (422)
T COG0738 102 KSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIK 181 (422)
T ss_pred hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHH
Confidence 7899999999999999999999999999999999888888899999999999999887543321 00
Q ss_pred --CCcchHHHHHhhhHHHHHHHHHHh--ccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCC
Q 010317 184 --GNINWRIMLGLAAVPAAVIGVGVL--IMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPD 259 (513)
Q Consensus 184 --~~~~Wr~~~~~~~~~~~i~~~~~~--~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (513)
....||+++...+....++.+... .+||.+. ..++
T Consensus 182 ~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~-----------------------------------------~~~~ 220 (422)
T COG0738 182 GADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV-----------------------------------------AAPS 220 (422)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc-----------------------------------------cccc
Confidence 011377777665554443333221 1222210 0000
Q ss_pred CCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhC-CCCCchhHHHHHHHHhHHH
Q 010317 260 DDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGA-GIHRKPVLFGINVVMGLAK 338 (513)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~ 338 (513)
. .. .+ .....+++++ |.++ ...+..|++...-.....|.+.++.+. +.+... ..-.......+.
T Consensus 221 ~-~~-----~~-~~~~~~l~~~--~~~~-----~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~-aa~~~s~~~~~~ 285 (422)
T COG0738 221 L-GA-----SG-SAGLSSLFQN--KHLR-----LGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQ-AAYYLSFFWVGF 285 (422)
T ss_pred c-cc-----cc-cchHHHHHhC--hHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHH-HHHHHHHHHHHH
Confidence 0 00 00 0012222221 1111 111222334333344556777777663 323222 222344555677
Q ss_pred HHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccC
Q 010317 339 TFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIF 418 (513)
Q Consensus 339 ~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~ 418 (513)
++|.+++.++..|+...+.+.....+.....+..++ .++ ........+. ++|...+.|..+....+..
T Consensus 286 ~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l-----~~g---~v~~~~l~~i----g~F~simfPTIfslal~~l 353 (422)
T COG0738 286 MVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVAL-----IGG---VVALYALFLI----GLFNSIMFPTIFSLALKNL 353 (422)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-----hcC---hHHHHHHHHH----HHHhHHHHHHHHHHHHhcc
Confidence 889999999999998888776544221111111111 111 1111222222 2233334455666666777
Q ss_pred ChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Q 010317 419 PLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTV 467 (513)
Q Consensus 419 P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (513)
|.+ -.. .|....++-+++++++.....+.|..+....+.+...+|.+
T Consensus 354 ~~~-ts~-~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~l 400 (422)
T COG0738 354 GEH-TSV-GSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYL 400 (422)
T ss_pred Ccc-ccc-cceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 733 222 23333445556778888888888877655444433333333
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-16 Score=157.79 Aligned_cols=364 Identities=15% Similarity=0.131 Sum_probs=221.8
Q ss_pred chhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhc-----CcHHHHHHH
Q 010317 52 SGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLA-----PNYPFLIVG 126 (513)
Q Consensus 52 ~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~-----~~~~~l~~~ 126 (513)
..+.+.+..+..-|+...+++..+..+-..+.++++|.++||+.||++++.+.++..+.....++. .+.+.+++.
T Consensus 30 ~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~ 109 (524)
T PF05977_consen 30 TVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLIL 109 (524)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 345566666677788889999999999999999999999999999999999999887665544432 467889999
Q ss_pred HHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHH
Q 010317 127 RMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGV 206 (513)
Q Consensus 127 R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~ 206 (513)
-++.|++.+...+.-.+++.|+.|+++-..+.++.+...++..++|+.++..+.. ..|-.+.|.+.++..++.+...
T Consensus 110 ~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva---~~G~~~~f~inalsfl~~i~~l 186 (524)
T PF05977_consen 110 TFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA---FFGAAAAFLINALSFLISILAL 186 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888998888888877777776654431 2245667777665444433333
Q ss_pred hccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhH
Q 010317 207 LIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAV 286 (513)
Q Consensus 207 ~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (513)
..++..+. +++ .++ +...+..++ .++-... .|.+
T Consensus 187 ~~~~~~~~----~~~-------------~~~---e~~~~~l~~------------------------G~ryv~~--~~~l 220 (524)
T PF05977_consen 187 LRWKPPPP----PSS-------------LPR---ERFFSALRE------------------------GLRYVRS--SPPL 220 (524)
T ss_pred HHcccccc----ccc-------------cch---hhhhhhHHH------------------------HHHHHhc--chHH
Confidence 22221110 000 000 000000000 0111111 1223
Q ss_pred HHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHH-HHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHH
Q 010317 287 RRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFG-INVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGM 365 (513)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~ 365 (513)
+..+.....+..+ ...+...+|.+.++.- +.....++ +....+++..++.++.+++.+|+++++++..+.+..
T Consensus 221 ~~~l~~~~~~~l~-----~~a~~aLlPl~a~~~l-~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~ 294 (524)
T PF05977_consen 221 RSVLLRSFLFNLF-----ASAVWALLPLFARDVL-GGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLF 294 (524)
T ss_pred HHHHHHHHHHHHh-----hhHHHHhhhHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHH
Confidence 3332222211111 1122234676665432 22223333 445677888888888888888888888777666555
Q ss_pred HHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHH
Q 010317 366 VGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTF 445 (513)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~ 445 (513)
.++.+.+++. .+.+.....+.......... .....+..++..|.++||++.++..++...+..+.+...
T Consensus 295 a~~~~~lal~-------~~~~~~~~~l~l~G~~~~~~----~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~ 363 (524)
T PF05977_consen 295 ALALLLLALS-------PSFWLALIALFLAGAAWIIA----NSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLW 363 (524)
T ss_pred HHHHHHHhcc-------hHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444321 11222111111111111111 112345667889999999999999888887666777777
Q ss_pred HHHHHhcccchhHHHHHHHHHHHHHhhh-eecccCCC
Q 010317 446 LSISHRLSFGGTFFLLAGITTVGTIFFY-VFLPETKG 481 (513)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pet~~ 481 (513)
..+.+..+...++.+.++..+++.++.. ..+++.+.
T Consensus 364 G~la~~~g~~~al~~a~~~lll~~~~~~~~~l~~~~~ 400 (524)
T PF05977_consen 364 GFLADHFGVRTALLIAGAALLLSALIALRFPLRQGEE 400 (524)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 7777777777777766655555544432 23444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.6e-15 Score=148.18 Aligned_cols=384 Identities=11% Similarity=0.033 Sum_probs=214.7
Q ss_pred HHHhhhCCCchhHHHHHHHHHHHHHHHHhhcccccc----ccCchHHHHHH-HHHHHHHHHHHHhcCcHHHHH-------
Q 010317 57 YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSD----YIGRRYTIVVA-AATFLVGALAMGLAPNYPFLI------- 124 (513)
Q Consensus 57 ~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d----r~GRr~~~~~~-~~~~~i~~~~~~~~~~~~~l~------- 124 (513)
.+.+++|++..+.+++..+..+...+.+++.|.++| |+|||+.+++. .....++..+.+++++...++
T Consensus 29 ~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~ 108 (477)
T TIGR01301 29 PYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKK 108 (477)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcccccccc
Confidence 355779999999999999999999999999999999 59999999886 555555556666766643211
Q ss_pred -----HHHHHhh-----hhcccccccccceeeccCCCccc--ccccchhhHHHHHHHHHHHHHHHHhc-----CCC-CC-
Q 010317 125 -----VGRMIAG-----IGVGYSLMISPVYTAEISPTMKR--GFLTSLPEVFIVLGILSGYVFNYALS-----GLP-GN- 185 (513)
Q Consensus 125 -----~~R~l~G-----~~~g~~~~~~~~~~~e~~p~~~R--~~~~~~~~~~~~~G~~~~~~~~~~~~-----~~~-~~- 185 (513)
+.+++.| ++.........++++|..|+++| +.+.+..+.+..+|.++++.++.... +.. ..
T Consensus 109 ~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~ 188 (477)
T TIGR01301 109 TKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEA 188 (477)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccc
Confidence 1233333 35555666677899999998865 57888888888899888888765431 110 00
Q ss_pred -----cchHHHHHhhhHHHHHHHHH-HhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCC
Q 010317 186 -----INWRIMLGLAAVPAAVIGVG-VLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPD 259 (513)
Q Consensus 186 -----~~Wr~~~~~~~~~~~i~~~~-~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (513)
.+-|+.|++.++..++..+. .+..+|.|... .+++.++ +.. +.+.+
T Consensus 189 ~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~-~~~~~~~------~~~---------------------~~~~~ 240 (477)
T TIGR01301 189 CGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG-SDDFINS------EAA---------------------PPSKH 240 (477)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc-cccchhh------hcc---------------------ccccc
Confidence 15688898877766555444 56678876310 0000000 000 00000
Q ss_pred CCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCC--C-chhH--------H
Q 010317 260 DDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIH--R-KPVL--------F 328 (513)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~-~~~~--------~ 328 (513)
+ . . ...+..++..... ++..++ ++...++.+.+.+.+.+|...++.....+ + .... .
T Consensus 241 ~-~---~--~~~~~i~~~~~~m-P~~m~~-----l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~ 308 (477)
T TIGR01301 241 G-E---E--AFFGELFGAFKYL-PRPVWI-----LLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGA 308 (477)
T ss_pred c-h---h--hhHHHHHHHHHHC-CHHHHH-----HHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHH
Confidence 0 0 0 0001122222221 122222 22333445555666666666555421111 1 0100 0
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhccCC-hhHHHhhhHHHHHHHHHHHHHhhccCC--C--------CchhH-HHHHHHHHH
Q 010317 329 GINVVMGLAKTFFVVLSALHLDKFGR-RPLLLLGSSGMVGSLLLLGIGSKILEG--S--------TPTVV-VVLCIIAVC 396 (513)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~-~~~~~~~~~ 396 (513)
......++...+.+++-.++.+|+|+ |..+..+.+...+++....+......+ . .+... ....++...
T Consensus 309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (477)
T TIGR01301 309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA 388 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence 01122334445666777888899985 677677765555555544433221000 0 00100 111222222
Q ss_pred HHHHHHhccccceeeeeecccCChhhH--hhHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHhh
Q 010317 397 AFVSFFSIGLGPITWVYSSEIFPLRLR--AQGSALAISVNRLVSGVISMTFLSISHRL--SFGGTFFLLAGITTVGTIFF 472 (513)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~el~P~~~R--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 472 (513)
..+..++ ...+++|..+++..|++-| |.-+|+.|.+--+-+.+.+.....+.+.. +...++.+.++..+++++.+
T Consensus 389 ~~Gi~~A-~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~ 467 (477)
T TIGR01301 389 ILGIPLA-ITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLA 467 (477)
T ss_pred HhhHHHH-HHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHH
Confidence 2222222 1224678888888885444 66678777766655555554444433322 33457778888888889998
Q ss_pred heecccCCC
Q 010317 473 YVFLPETKG 481 (513)
Q Consensus 473 ~~~~pet~~ 481 (513)
.+.+|+++.
T Consensus 468 ~~~~~~~~~ 476 (477)
T TIGR01301 468 LILLPRPRV 476 (477)
T ss_pred HHhCCCCCC
Confidence 899998754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-15 Score=140.97 Aligned_cols=357 Identities=20% Similarity=0.188 Sum_probs=235.7
Q ss_pred HHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHH
Q 010317 42 ILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYP 121 (513)
Q Consensus 42 ~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~ 121 (513)
+.---.++.+++.++.+++|+|+|.+..++++++-.+...+.+++..+++.|+|.++.+..++++..++.++-... +..
T Consensus 22 ~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~ 100 (395)
T COG2807 22 FNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLP 100 (395)
T ss_pred hccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHH
Confidence 3333456788899999999999999999999999999999999999999999999999999999999999988877 778
Q ss_pred HHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHH
Q 010317 122 FLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAV 201 (513)
Q Consensus 122 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i 201 (513)
.++.+-.+.|.+.+......+..+.|.+|++ -+.+++.|.....+|..+++.+...+.... .+||....+=++++++
T Consensus 101 ~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~--~gW~~aL~~WAl~all 177 (395)
T COG2807 101 LLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHS--GGWRGALGFWALLALL 177 (395)
T ss_pred HHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--ccHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999854 588999999888888888777765554322 4799988888888777
Q ss_pred HHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcC
Q 010317 202 IGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILK 281 (513)
Q Consensus 202 ~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (513)
..+.+ +|...| ++ . +.. + .+. .+....|+
T Consensus 178 Al~~W--lPq~~r-----~~---~-----------------------------~~~-~-~~~-----~~~~~vw~----- 206 (395)
T COG2807 178 ALLIW--LPQALR-----EQ---A-----------------------------ASI-A-TKL-----VSVRKVWR----- 206 (395)
T ss_pred HHHHH--hhhccc-----cc---c-----------------------------ccc-c-ccc-----cccccccc-----
Confidence 66543 222111 00 0 000 0 000 00011222
Q ss_pred CChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccC-ChhHHHh
Q 010317 282 PTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFG-RRPLLLL 360 (513)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g-rr~~~~~ 360 (513)
.+.-+.+.+.+..|...+|..+.|+|.++.+.|.+...... +..+..+...+.++....+.+|.. +|+..+.
T Consensus 207 ------~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~-llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~ 279 (395)
T COG2807 207 ------SPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGS-LLSLMQLAQLPTALLIPLLARRSKNQRPLVVL 279 (395)
T ss_pred ------CchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhh-HHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 22233344455667778889999999999998877665543 445566778888899999998654 4544443
Q ss_pred hhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecc-cCChhhHhhHHHHHHHHHHHHHH
Q 010317 361 GSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSE-IFPLRLRAQGSALAISVNRLVSG 439 (513)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-l~P~~~R~~~~g~~~~~~~~~~~ 439 (513)
....+... .++++ .......+. . .++........|..+ ...+.. .-.++.-+.-.|+...++++..+
T Consensus 280 ~~~~~l~G--~~G~~---~~P~~~~~l-w-~~llG~G~G~~F~la-----L~li~~rs~~a~~Aa~LSgmaQg~GYllAa 347 (395)
T COG2807 280 ALLLMLVG--LVGLL---LAPGQLPIL-W-ALLLGLGQGGAFPLA-----LTLILLRSSDAAIAAALSGMAQGVGYLLAA 347 (395)
T ss_pred HHHHHHHH--HHHHH---HhhhhHHHH-H-HHHHhCccchHHHHH-----HHHHHhhcCChHHHHHHHHHhhhhhHHHHh
Confidence 32222222 22222 111111111 1 111111111222221 112222 22334456668888899999999
Q ss_pred HHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHhh
Q 010317 440 VISMTFLSISHRLS-FGGTFFLLAGITTVGTIFF 472 (513)
Q Consensus 440 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 472 (513)
..+..+..+.|..+ +....+.+....++..+..
T Consensus 348 ~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 348 FGPWLFGFLHDATGSWSAPLVLLALATLLMLIFG 381 (395)
T ss_pred hhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 99999988887654 4444455544444444443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-15 Score=155.38 Aligned_cols=170 Identities=14% Similarity=0.038 Sum_probs=122.7
Q ss_pred HHHHHHHhhcccccc-hhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccC-----chHHHHHHHHHHH-HH
Q 010317 38 SINSILLGYDIGVMS-GAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIG-----RRYTIVVAAATFL-VG 110 (513)
Q Consensus 38 ~~~~~~~g~~~~~~~-~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~G-----Rr~~~~~~~~~~~-i~ 110 (513)
...++..|.. .... ...+.+.+++|+++++.+...++..+.+.+-.+ +|+++||++ ||+.+.++.++.. +.
T Consensus 32 ~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~ 109 (468)
T TIGR00788 32 LQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAIL 109 (468)
T ss_pred HHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHH
Confidence 3345666766 4444 444567888999999999999999999999777 999999998 7777777776663 33
Q ss_pred HHHHHhcCcHHH-HHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHH---HHHHHHHHHHHHHhcCCCCCc
Q 010317 111 ALAMGLAPNYPF-LIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFI---VLGILSGYVFNYALSGLPGNI 186 (513)
Q Consensus 111 ~~~~~~~~~~~~-l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~---~~G~~~~~~~~~~~~~~~~~~ 186 (513)
....+..++... ..+.+++.+++.+......-++..|..+ +++....+.....+ .+|.+++..++..+. ...
T Consensus 110 ~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~---~~~ 185 (468)
T TIGR00788 110 YGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL---DKT 185 (468)
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH---Hhc
Confidence 333333455444 4448899999999988889999999998 65555444444444 367777776655443 345
Q ss_pred chHHHHHhhhHHHHHHHHHHhccCCCc
Q 010317 187 NWRIMLGLAAVPAAVIGVGVLIMPESP 213 (513)
Q Consensus 187 ~Wr~~~~~~~~~~~i~~~~~~~lpEsp 213 (513)
+||..|++.++..++..+..+++||.+
T Consensus 186 ~~~~~f~~~a~l~ll~~~~~~~~~E~~ 212 (468)
T TIGR00788 186 LTRILFLITAALLLLQLFVSNLSKERR 212 (468)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccc
Confidence 899999988777766656667788864
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=5e-14 Score=139.62 Aligned_cols=366 Identities=16% Similarity=0.177 Sum_probs=199.2
Q ss_pred cchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccC-chHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 010317 51 MSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIG-RRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMI 129 (513)
Q Consensus 51 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~G-Rr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l 129 (513)
..+..+..-++.|+|.+|+|.+.++..+...++++++|.++||++ +|+.+.+..++.++.........+++.+++.-++
T Consensus 21 ~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l 100 (400)
T PF03825_consen 21 FLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLL 100 (400)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344455556667899999999999999999999999999999986 5777777777777777777788899888888777
Q ss_pred hhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHH-HHHhcCCCCCcchHHHHHhhhHHHHHHHHHHhc
Q 010317 130 AGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVF-NYALSGLPGNINWRIMLGLAAVPAAVIGVGVLI 208 (513)
Q Consensus 130 ~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~~ 208 (513)
..+...+..+...++..+....+ +.-.+-.-.+-++|..++... ...+....+..+..+.+++.++..++.....+.
T Consensus 101 ~~~~~~p~~pl~dsi~~~~~~~~--~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~ 178 (400)
T PF03825_consen 101 FSFFFSPTMPLSDSIALSYLGDR--GKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALF 178 (400)
T ss_pred HHHHHccHHHHHHHHHHHHcccc--cCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHh
Confidence 77776666666666555544322 111222222333444333211 111111111112233445555445555555567
Q ss_pred cCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHH
Q 010317 209 MPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRR 288 (513)
Q Consensus 209 lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (513)
+|++|. +++.++. .+ + ......+ +++++| ...-
T Consensus 179 lp~~~~----~~~~~~~-----------~~--~---------------------------~~~~~~~-~llk~~--~~~~ 211 (400)
T PF03825_consen 179 LPKTPP----KRSAKES-----------VK--K---------------------------LLGLDAL-KLLKNP--RFLV 211 (400)
T ss_pred CCCCcc----ccccCCC-----------cc--c---------------------------ccchHHH-HHhcCc--cHHH
Confidence 888762 0000000 00 0 0000001 122211 1111
Q ss_pred HHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHH
Q 010317 289 MLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGS 368 (513)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~ 368 (513)
++... +....+......|.+.++++.+.........+..+..+...+..+..+++..|+|-|+++.++....++=
T Consensus 212 -Fll~~----~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR 286 (400)
T PF03825_consen 212 -FLLAA----FLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVR 286 (400)
T ss_pred -HHHHH----HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 11111 1111122223345566777766322222222334555678888889999999999999998876554444
Q ss_pred HHHHHHHhhccCCCCchhHH-HHHHH---HHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHH-HHHHHHHH
Q 010317 369 LLLLGIGSKILEGSTPTVVV-VLCII---AVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNR-LVSGVISM 443 (513)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~-~~~~~~~~ 443 (513)
..+++.. .++.+.. ....+ .-+.....+. .....|.++..|++.|+++.++.+.+.. +++.+.+.
T Consensus 287 ~~l~a~~------~~~~~~~~~~~~l~q~lhG~tf~~~~----~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~ 356 (400)
T PF03825_consen 287 WLLYAYF------SDPWPFIVALQLLGQLLHGLTFGLFH----AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSL 356 (400)
T ss_pred HHHHHHh------cCCcHHHHHHHHHHHhhhhHHHHHHH----HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHH
Confidence 4443321 1111111 11111 1121111111 1235688999999999999999887655 33444444
Q ss_pred HHHHHHHhcccc------hhHHHHHHHHHHHHHhhheecccCC
Q 010317 444 TFLSISHRLSFG------GTFFLLAGITTVGTIFFYVFLPETK 480 (513)
Q Consensus 444 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~pet~ 480 (513)
.-+.+.+..+.. ..+.+.+++.++..+..+++.+|+.
T Consensus 357 igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 357 IGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred HHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 555565554433 2345555555555555556666654
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5e-16 Score=159.93 Aligned_cols=175 Identities=16% Similarity=0.146 Sum_probs=133.1
Q ss_pred HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHH---HHhcCcHHHHHHHHHHhhhh
Q 010317 57 YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALA---MGLAPNYPFLIVGRMIAGIG 133 (513)
Q Consensus 57 ~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~---~~~~~~~~~l~~~R~l~G~~ 133 (513)
++++++|.+..+..+..+...++..++.+++|+++||+|||+++..+.++..+.... ...+++...++++|++.|++
T Consensus 276 ~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 355 (490)
T PRK10642 276 YLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVI 355 (490)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 456778988888888888889999999999999999999999998887655544332 22345677888899999887
Q ss_pred cccccccccceeeccCCCcccccccch-hhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHhccCCC
Q 010317 134 VGYSLMISPVYTAEISPTMKRGFLTSL-PEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIMPES 212 (513)
Q Consensus 134 ~g~~~~~~~~~~~e~~p~~~R~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~~lpEs 212 (513)
.+........++.|.+|++.|+...++ ++.....|.+...+.++.... ..+|+..+++..+++++..+..+++|||
T Consensus 356 ~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~---~~~~~~~~~~~~~~~~i~~~~~~~~pes 432 (490)
T PRK10642 356 LNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVES---TQNLMMPAYYLMVVAVIGLITGVTMKET 432 (490)
T ss_pred HHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 776666667788999999999998886 555555555555555544431 1257877777677777766667778999
Q ss_pred chhHHhc-----CCHHHHHHHHHHhcC
Q 010317 213 PRWLVMK-----SRYDEAKRVLLKVSD 234 (513)
Q Consensus 213 p~~l~~~-----~~~~~a~~~~~~~~~ 234 (513)
|+|+.++ +|.|||++.++++++
T Consensus 433 ~~~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 433 ANRPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred cCCCCCCccccccchhhHHHHhhcccc
Confidence 9999865 999999999998863
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.2e-13 Score=134.12 Aligned_cols=143 Identities=19% Similarity=0.234 Sum_probs=111.5
Q ss_pred HHHHhhhCCCchhHHHHHHHHHHHHHHHHhhcccccccc-CchHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHhhhh
Q 010317 56 LYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYI-GRRYTIVVAAATFLVGALAMGLAP-NYPFLIVGRMIAGIG 133 (513)
Q Consensus 56 ~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~-GRr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~R~l~G~~ 133 (513)
.++++++|+++.+.+.+.+.+.....++.+++|+++||+ |||+++.++.++..++..+.+... +...+.+.-.+.+++
T Consensus 34 ~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG 113 (493)
T PRK15462 34 LYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCG 113 (493)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh
Confidence 357788999999999999999999999999999999999 999999999999999987766543 223333344444455
Q ss_pred cccccccccceeeccCCCc--ccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHH
Q 010317 134 VGYSLMISPVYTAEISPTM--KRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAV 201 (513)
Q Consensus 134 ~g~~~~~~~~~~~e~~p~~--~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i 201 (513)
.|...+....+++|.+|++ +|....++.....++|..+++.+...+. ...|||+.|.+.++..++
T Consensus 114 ~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~---~~~Gw~~~F~iaaigm~l 180 (493)
T PRK15462 114 YGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ---EEYSWAMGFGLAAVGMIA 180 (493)
T ss_pred cccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH---hhhChHHHHHHHHHHHHH
Confidence 6666666678899999976 6888888888888888888877765554 245899999886654433
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-13 Score=129.32 Aligned_cols=403 Identities=15% Similarity=0.119 Sum_probs=233.5
Q ss_pred CCchHHHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHH
Q 010317 25 GLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAA 104 (513)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~ 104 (513)
++.+.+|++.....+-++-++++--.+++...+...-++ +.....|+.-+|.+.+..-.+++-|+.||+|-|..++++.
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt 116 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT 116 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence 356667888777788888888887778888878888888 7777889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC------cHH--HHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHH
Q 010317 105 ATFLVGALAMGLAP------NYP--FLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFN 176 (513)
Q Consensus 105 ~~~~i~~~~~~~~~------~~~--~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~ 176 (513)
....+++.+-..+. .++ ....+..+.+.+.......-.-...-|+|+++|+.+.......+-+|..++.+++
T Consensus 117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp 196 (480)
T KOG2563|consen 117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP 196 (480)
T ss_pred HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence 99999998777653 233 5556666666655544444334445589999999999988777888888888776
Q ss_pred HHhcCCC---CCcchHH--HHHhhhHHH-HHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010317 177 YALSGLP---GNINWRI--MLGLAAVPA-AVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAA 250 (513)
Q Consensus 177 ~~~~~~~---~~~~Wr~--~~~~~~~~~-~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (513)
.++...+ ....|.. +|+...+.+ +.+.+..+..+|.|+.- +..+... .. +
T Consensus 197 pilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tP-----ps~s~~~------------~~--~----- 252 (480)
T KOG2563|consen 197 PILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTP-----PSASQAA------------LQ--D----- 252 (480)
T ss_pred ceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-----CchhHhh------------hh--c-----
Confidence 6654332 2346765 344333332 33333333344433210 0000000 00 0
Q ss_pred hhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHH
Q 010317 251 KESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGI 330 (513)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 330 (513)
.......+++++.+. +......+......++.+...+...+...+... ......
T Consensus 253 ------------------~~f~~si~~~~~n~~-------F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~-~~aG~i 306 (480)
T KOG2563|consen 253 ------------------ASFPKSIKSCFKNRQ-------FIILAICYGIGLGLFNSLSTLLNLALCPSGYEG-VFAGYI 306 (480)
T ss_pred ------------------CcHHHHHHHHHcCcc-------HHHHHHHHhhhHHHHHHHHHHhhhccccccCCc-cccchh
Confidence 000012233332211 111111111111122222222221222222222 112224
Q ss_pred HHHHhHHHHHHHHHHHHHhhccCChh-HHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccce
Q 010317 331 NVVMGLAKTFFVVLSALHLDKFGRRP-LLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPI 409 (513)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~d~~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (513)
.....+.+++++++.+.+.||.+.-+ .+++.......+...+..+ .... . ..+. ....+...+++..+..|+
T Consensus 307 g~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~-t~~~-~-~~vi----v~~t~~~~g~~~~~~~Pi 379 (480)
T KOG2563|consen 307 GALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTC-TLFL-G-DSVI----VFTTCGLLGFFGTGYLPI 379 (480)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-hccC-C-ceEe----hhhhHHHHHHhhcCCCCc
Confidence 45566788999999999999977633 3333222211111111111 1111 1 1111 122233345666777788
Q ss_pred eeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cchhHHHHHHHHHHHHHhhheecccCCCCCHH
Q 010317 410 TWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLS----FGGTFFLLAGITTVGTIFFYVFLPETKGKTLE 485 (513)
Q Consensus 410 ~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~ 485 (513)
..-...|..=+..-++..|+.+..+++.+.+..+......+..+ ....-+.....+++..+++.++.|+-++++.|
T Consensus 380 g~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e 459 (480)
T KOG2563|consen 380 GFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLRAE 459 (480)
T ss_pred ceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhhh
Confidence 88788887545667888999999999988777666555554444 33334455555566666666666665555544
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-13 Score=139.23 Aligned_cols=158 Identities=14% Similarity=0.107 Sum_probs=102.3
Q ss_pred hHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhcccccc----ccCc-hHHHHHHHHHHHHHHHHHHhcCc------HHHH
Q 010317 55 VLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSD----YIGR-RYTIVVAAATFLVGALAMGLAPN------YPFL 123 (513)
Q Consensus 55 ~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d----r~GR-r~~~~~~~~~~~i~~~~~~~~~~------~~~l 123 (513)
..++.+.+|++....|.+..+.-+.-++..++.|.++| |+|| |+.++++.+..+++..+....++ +..+
T Consensus 30 ~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~ 109 (473)
T PRK10429 30 MYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFV 109 (473)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 34677778999999999999999999999999999999 6698 66677777777777555544332 2234
Q ss_pred HHHHHHhhhhcccccccccceeeccC-CCcccccccchhhHHHHHHHHHHHHHHH-Hh---cCCCCCcchHHHHHhhhHH
Q 010317 124 IVGRMIAGIGVGYSLMISPVYTAEIS-PTMKRGFLTSLPEVFIVLGILSGYVFNY-AL---SGLPGNINWRIMLGLAAVP 198 (513)
Q Consensus 124 ~~~R~l~G~~~g~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~G~~~~~~~~~-~~---~~~~~~~~Wr~~~~~~~~~ 198 (513)
++.-.+.+++.........+..+|+. +.++|.+..+.-..+..+|..+...+.. .+ +......+|++...+.++.
T Consensus 110 ~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~ 189 (473)
T PRK10429 110 CVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAF 189 (473)
T ss_pred HHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 44445556665555556667789988 5888999888755555555444333222 21 1112234688777666665
Q ss_pred HHHHHHH-HhccCCC
Q 010317 199 AAVIGVG-VLIMPES 212 (513)
Q Consensus 199 ~~i~~~~-~~~lpEs 212 (513)
.++..+. ++..+|.
T Consensus 190 ~~~~~~~~~~~~~e~ 204 (473)
T PRK10429 190 FIVSTIITLRNVHEV 204 (473)
T ss_pred HHHHHHHHHcCceec
Confidence 5443333 3334553
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-13 Score=136.35 Aligned_cols=362 Identities=17% Similarity=0.208 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHH-HHHHHHHHHHhc-Cc-HHHHHHHHHHhhhhccccccccccee
Q 010317 69 VEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAA-TFLVGALAMGLA-PN-YPFLIVGRMIAGIGVGYSLMISPVYT 145 (513)
Q Consensus 69 ~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~-~~~i~~~~~~~~-~~-~~~l~~~R~l~G~~~g~~~~~~~~~~ 145 (513)
.++..++..+..++..++.|-++|+-|+||.++.... +..+++....+. ++ +....+.-++.-++.+.......+|+
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888889999999999999997766655544 445566666664 33 43334444444456666667777899
Q ss_pred eccCCCccc--------------------------ccccchhhHHHHHHHHHHHHHHHHhcCCC-----CCcchHHHHHh
Q 010317 146 AEISPTMKR--------------------------GFLTSLPEVFIVLGILSGYVFNYALSGLP-----GNINWRIMLGL 194 (513)
Q Consensus 146 ~e~~p~~~R--------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-----~~~~Wr~~~~~ 194 (513)
.|+.+++.+ ++.++.-.....+|.++..++...+.... ....-|..+.+
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~ 231 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI 231 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence 999998888 88888755555566655555544332111 12345777777
Q ss_pred hhHHHHHHHH-HHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcc
Q 010317 195 AAVPAAVIGV-GVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEG 273 (513)
Q Consensus 195 ~~~~~~i~~~-~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (513)
.++--+++.+ .++++||.|+- ++.+ +. ......-.++..+.
T Consensus 232 ~a~ww~vfsiP~~~~~~~~~~~---~~~~-~~----------~~~~~~g~~~l~~t------------------------ 273 (477)
T PF11700_consen 232 VALWWLVFSIPLFLWLPDRPGP---RPLP-SG----------SSYLRFGFKRLWRT------------------------ 273 (477)
T ss_pred HHHHHHHHHHHHHHhCCCCCCC---CCCC-cc----------hhHHHHHHHHHHHH------------------------
Confidence 6666544444 46677777641 0000 00 00000001111000
Q ss_pred hhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHH-hCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhcc
Q 010317 274 VWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFK-GAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKF 352 (513)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 352 (513)
+++.. .++.... ..+.++++..+.+.+......+.+ ..+++.. ....+.++..+...+|.++.+++.||+
T Consensus 274 -~k~~~-----~~~~~~~--fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~-~l~~~~l~~~i~a~~Ga~~~g~l~~r~ 344 (477)
T PF11700_consen 274 -FKEIR-----KLRQLFL--FLIAYFLYSDGVNTIISFAGIYATEVLGMSTT-QLIVFGLVVQIVAIIGALLFGWLQDRF 344 (477)
T ss_pred -HHHHH-----hChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11110 1111111 122333444455555555544444 3344333 344566778889999999999999999
Q ss_pred CCh--hHHHhhhHHHHHHHHHHHHHhhc--cCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHH
Q 010317 353 GRR--PLLLLGSSGMVGSLLLLGIGSKI--LEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSA 428 (513)
Q Consensus 353 grr--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g 428 (513)
|.| +++..+.+...+.. +.+..... ..+....+.... .....+.+..+..+..-.+.+|+.|+...+.-.|
T Consensus 345 g~k~~~~l~~~l~~~~~i~-~~g~~G~~~~~~g~~~~~~f~~----~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFg 419 (477)
T PF11700_consen 345 GPKTKRTLLISLILWIIIP-LYGLFGFWPSFFGLKSPWEFWV----LAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFG 419 (477)
T ss_pred CCchhHHHHHHHHHHHHHH-HHHHHHhhhcccCcccHHHHHH----HHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHH
Confidence 999 66655443322211 22221111 111122222111 1112223333444566778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHhhheecccCCCCC
Q 010317 429 LAISVNRLVSGVISMTFLSISHRLS-FGGTFFLLAGITTVGTIFFYVFLPETKGKT 483 (513)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 483 (513)
+....++..+.+.+.++..+.+..+ .+..+....++.+++.++. ...++.|+|.
T Consensus 420 ly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~~ 474 (477)
T PF11700_consen 420 LYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGRE 474 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhhhh
Confidence 9999999988888888877766554 5566776666666666554 5556655554
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.6e-15 Score=139.11 Aligned_cols=145 Identities=21% Similarity=0.298 Sum_probs=127.6
Q ss_pred hhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcccccc
Q 010317 60 EDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLM 139 (513)
Q Consensus 60 ~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~ 139 (513)
++.+-.+++.|++..+..+...+-+++.|.+.||+|+|.-+++++..+..++++.+|..++++++++|.++|+|.+....
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence 44566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeccCCCcc-cccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHh
Q 010317 140 ISPVYTAEISPTMK-RGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVL 207 (513)
Q Consensus 140 ~~~~~~~e~~p~~~-R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~ 207 (513)
...+++++.+|.++ |++++|..-.+.++|.++++.++..+- ...|.+..|++.++..++-....+
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilY---e~~Gk~aPFlVL~~v~Lld~~L~l 244 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILY---EFAGKSAPFLVLAIVLLLDGALQL 244 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchH---hhcCCcCcHHHHHHHHHHHHHHHH
Confidence 99999999998876 899999988888999888887765543 334788899998887766555443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-12 Score=130.87 Aligned_cols=333 Identities=16% Similarity=0.161 Sum_probs=193.2
Q ss_pred hhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhcccccc----ccCchHHHH-HHHHHHHHHHHHHHhc-C-c------H
Q 010317 54 AVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSD----YIGRRYTIV-VAAATFLVGALAMGLA-P-N------Y 120 (513)
Q Consensus 54 ~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d----r~GRr~~~~-~~~~~~~i~~~~~~~~-~-~------~ 120 (513)
..++..+.+++++...+.+..+.-+.-++-.++.|.++| |+|||+.++ ++....+++..+.... + + .
T Consensus 24 ~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~ 103 (428)
T PF13347_consen 24 LLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKL 103 (428)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHH
Confidence 345677888999999999999999999999999999999 899766554 5667777776666655 4 1 2
Q ss_pred HHHHHHHHHhhhhcccccccccceeeccCCC-cccccccchhhHHHHHHHHHHHHHHHH-hcCCCC--C-cchHHHHHhh
Q 010317 121 PFLIVGRMIAGIGVGYSLMISPVYTAEISPT-MKRGFLTSLPEVFIVLGILSGYVFNYA-LSGLPG--N-INWRIMLGLA 195 (513)
Q Consensus 121 ~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~-~~R~~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~--~-~~Wr~~~~~~ 195 (513)
..+.+.-++..++.........++..|+.++ ++|.+..+.-..+..+|.++...+... .....+ . .+|++..++.
T Consensus 104 ~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~ 183 (428)
T PF13347_consen 104 VWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVL 183 (428)
T ss_pred HHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHH
Confidence 2345666666777777777777899999984 689999998888888887544443332 222221 1 2799998888
Q ss_pred hHHHHHHHHH-HhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcch
Q 010317 196 AVPAAVIGVG-VLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGV 274 (513)
Q Consensus 196 ~~~~~i~~~~-~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (513)
++..++..+. .+..+|.++ +.++ ++ + +.+....
T Consensus 184 ~iv~~v~~~i~~~~~ke~~~------~~~~------------~~----------------------~------~~~~~~~ 217 (428)
T PF13347_consen 184 AIVGLVFFLITFFFVKERSV------EVTE------------QE----------------------K------KISLRDS 217 (428)
T ss_pred HHHHHHHhhhhhheeeeccc------cccc------------cc----------------------c------ccccccc
Confidence 7776665554 344555110 0000 00 0 0001112
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCC
Q 010317 275 WKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGR 354 (513)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gr 354 (513)
++.+++. |.++...... +.+..+........+.+.+..-... ...........+...++.++.+++.||+|+
T Consensus 218 ~~~~~~n--r~~~~l~~~~-----~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk 289 (428)
T PF13347_consen 218 LRSLFRN--RPFRILLLAF-----FLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGK 289 (428)
T ss_pred hhhhccc--chHHHHHHHH-----HHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 2333322 2222222211 1111222222222233333221111 222234445667778888999999999999
Q ss_pred hhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCCh-------hhHhhHH
Q 010317 355 RPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPL-------RLRAQGS 427 (513)
Q Consensus 355 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~-------~~R~~~~ 427 (513)
|+.+..+......+.+++.+... .+.+..... . ...+..........+...+|+.+. +..|.-.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~-~---~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~ 360 (428)
T PF13347_consen 290 KKVYIIGLLLAALGFLLLFFLGP-----GSPWLVLIL-F---ILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYF 360 (428)
T ss_pred eeehhhhHHHHHHHHHHHHHHHh-----hhHHHHHHH-H---HHhHhhhcccccccccccccchhhHHHhcCCCchHHHH
Confidence 99998877666555544433221 111211111 1 111222223335678888888763 3346667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010317 428 ALAISVNRLVSGVISMTFLSIS 449 (513)
Q Consensus 428 g~~~~~~~~~~~~~~~~~~~~~ 449 (513)
|+.+...+++.++.+.....+.
T Consensus 361 s~~~~~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 361 SVNSFFIKIGQGLAGAIVGLLL 382 (428)
T ss_pred HhhhhhhHHHHHHHHHHHHHHH
Confidence 7777777877776666554443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.5e-13 Score=135.75 Aligned_cols=151 Identities=14% Similarity=0.097 Sum_probs=103.3
Q ss_pred hhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccc----cCc-hHHHHHHHHHHHHHHHHHHhcCc------HHH
Q 010317 54 AVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDY----IGR-RYTIVVAAATFLVGALAMGLAPN------YPF 122 (513)
Q Consensus 54 ~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr----~GR-r~~~~~~~~~~~i~~~~~~~~~~------~~~ 122 (513)
...++.+++|++..+.+.+.++.-+..++..++.|.++|| +|| |+.++.+.+..+++..+....++ ...
T Consensus 32 l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~ 111 (444)
T PRK09669 32 LAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIY 111 (444)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 3456788899999999999999999999999999999999 787 45566677777777665555543 234
Q ss_pred HHHHHHHhhhhcccccccccceeeccC-CCcccccccchhhHHHHHHHHHHHHHHHHh-cCC---CCCcchHHHHHhhhH
Q 010317 123 LIVGRMIAGIGVGYSLMISPVYTAEIS-PTMKRGFLTSLPEVFIVLGILSGYVFNYAL-SGL---PGNINWRIMLGLAAV 197 (513)
Q Consensus 123 l~~~R~l~G~~~g~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~-~~~---~~~~~Wr~~~~~~~~ 197 (513)
+++.-++.+.+.........++.+|+. +.++|.+..+.-..+..+|..++..+...+ ... ....+|+..+.+.++
T Consensus 112 ~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~i 191 (444)
T PRK09669 112 ACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGL 191 (444)
T ss_pred HHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 444555555554444444557788987 457799887777767677666654432221 111 124589988877776
Q ss_pred HHHHHHH
Q 010317 198 PAAVIGV 204 (513)
Q Consensus 198 ~~~i~~~ 204 (513)
...+..+
T Consensus 192 i~~v~~~ 198 (444)
T PRK09669 192 LGVVLFF 198 (444)
T ss_pred HHHHHHH
Confidence 6554443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-11 Score=123.33 Aligned_cols=110 Identities=10% Similarity=0.169 Sum_probs=73.2
Q ss_pred hHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhcccccccc----CchHHH-HHHHHHHHHHHHHHH-h----cCcH--HH
Q 010317 55 VLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYI----GRRYTI-VVAAATFLVGALAMG-L----APNY--PF 122 (513)
Q Consensus 55 ~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~----GRr~~~-~~~~~~~~i~~~~~~-~----~~~~--~~ 122 (513)
.+++++.+|++..+.|.+.++..+..++..++.|.++||. |||+.+ .++.+...+...+.. . .++. ..
T Consensus 32 ~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (448)
T PRK09848 32 LSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVY 111 (448)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHH
Confidence 3578888999999999999999999999999999999996 777755 445444444443322 1 1121 22
Q ss_pred HHHHHHHhhhhcccccccccceeeccCCC-cccccccchhhHH
Q 010317 123 LIVGRMIAGIGVGYSLMISPVYTAEISPT-MKRGFLTSLPEVF 164 (513)
Q Consensus 123 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~-~~R~~~~~~~~~~ 164 (513)
+++.-++.+++.+...+...+...|..++ ++|.+..+.-..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~ 154 (448)
T PRK09848 112 AYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIA 154 (448)
T ss_pred HHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHH
Confidence 33344556666666665555566666544 5688776654443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-11 Score=118.52 Aligned_cols=360 Identities=17% Similarity=0.200 Sum_probs=172.9
Q ss_pred HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHH-HHHH--Hh----cCcHH-HHHHHHH
Q 010317 57 YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVG-ALAM--GL----APNYP-FLIVGRM 128 (513)
Q Consensus 57 ~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~-~~~~--~~----~~~~~-~l~~~R~ 128 (513)
.+++..|++.++.|.+.++..+...+.+++.|.++||.|.|+-++....+..+. .... .+ ..|.. ..+++-.
T Consensus 33 WL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i 112 (412)
T PF01306_consen 33 WLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGI 112 (412)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTT
T ss_pred HHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456668999999999999999999999999999999999777665554443322 2111 11 12322 2333333
Q ss_pred HhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHh-
Q 010317 129 IAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVL- 207 (513)
Q Consensus 129 l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~- 207 (513)
..|+...+..++.-+|..+....+ +.=.|-.-.+.++|..++..++..+- +.+-+..||+....+++..+..+
T Consensus 113 ~l~~~f~~~~~~~Ea~~er~sr~~--~feYG~~R~wGSig~ai~s~~~G~L~----~i~p~~~fwi~s~~~~il~lll~~ 186 (412)
T PF01306_consen 113 YLGLVFNAGVPLSEAYAERVSRRN--GFEYGRARMWGSIGFAIASLLAGILF----NINPNIIFWIASAAAIILLLLLLL 186 (412)
T ss_dssp TTTTTTTTHHHHHHHHHHHHHHHH--SS-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcccchHHHHHHHHHHHHh--cCCcchHHHHhhHHHHHHHHHhheee----eeCccHHHHHHHHHHHHHHHHHHH
Confidence 344444444444434433222111 11111111233344444433332222 11345677766555544444333
Q ss_pred ccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHH
Q 010317 208 IMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVR 287 (513)
Q Consensus 208 ~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (513)
.-|+.++-....+.. ..++++..+++ ..++++ .|...
T Consensus 187 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~-----------------------------~~~l~k--~~~fw 223 (412)
T PF01306_consen 187 LKPDVPPQAEVADAL------------GAKKDKVSLKD-----------------------------VLSLFK--MRNFW 223 (412)
T ss_dssp S---SSSSS-SSTTS------------SS------HHH-----------------------------HHHHTT--SHHHH
T ss_pred cCCcCchhhhhhccc------------ccCCCCCcHHH-----------------------------HHHHhc--chhHH
Confidence 333433210000000 00000000000 111111 11111
Q ss_pred HHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCC---chhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHH
Q 010317 288 RMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHR---KPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSG 364 (513)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~ 364 (513)
...+...... ..++.+-...|.++...-.+. +....-++....+...+...+..++.+|+|.|+.++++..+
T Consensus 224 ~~~l~v~g~~-----~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i 298 (412)
T PF01306_consen 224 FFVLFVIGVA-----AIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHH
Confidence 1111111111 111222112233333221111 11112233445566777788899999999999999887766
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHH-HHHHHHHHHHH
Q 010317 365 MVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAIS-VNRLVSGVISM 443 (513)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~-~~~~~~~~~~~ 443 (513)
+++=++..++. ++.+.....=+.-+.....+.. ...-|.++.+|+++.++...+... ...++..+.+.
T Consensus 299 ~~iRi~~~~~~-------~~~~~i~~~klLH~~e~~l~lv----a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~ 367 (412)
T PF01306_consen 299 MAIRIIGSGFA-------TNPWVISLIKLLHALEFPLLLV----AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSP 367 (412)
T ss_dssp HHHHHHHHHT---------SHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHhhh-------cchHHHHHHHHHHHHHHHHHHH----HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555544431 2222222221122221111111 124578999999999998888754 45555667777
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHhhheecccCCC
Q 010317 444 TFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKG 481 (513)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 481 (513)
....+.++.++...+++.+++.+...++..+.+++.++
T Consensus 368 ~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 368 LAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred hHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 88888999888888888888888777777776665443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-10 Score=109.65 Aligned_cols=353 Identities=15% Similarity=0.145 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccCchHHH-HHHHHHHHHHHHHHHhcCc--H-HHHHHHHHHhhhhcccccccccce
Q 010317 69 VEVLVGILNVFSLIGSLASGKTSDYIGRRYTI-VVAAATFLVGALAMGLAPN--Y-PFLIVGRMIAGIGVGYSLMISPVY 144 (513)
Q Consensus 69 ~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~-~~~~~~~~i~~~~~~~~~~--~-~~l~~~R~l~G~~~g~~~~~~~~~ 144 (513)
.+...++..+-.++-+++.|-.+|..|+||-. -....+..++.....++++ + ...++.-.+..++.....+...++
T Consensus 60 ~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~ 139 (438)
T COG2270 60 WGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSM 139 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhH
Confidence 56677788888889999999999999965554 4455555566666666655 4 345555666777777777778889
Q ss_pred eeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCC---------------CCcchHHHHHhhhHHHHHHHH-HHhc
Q 010317 145 TAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLP---------------GNINWRIMLGLAAVPAAVIGV-GVLI 208 (513)
Q Consensus 145 ~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---------------~~~~Wr~~~~~~~~~~~i~~~-~~~~ 208 (513)
+.+..++++-++.++.....-.+|.++..+......... +...=|..+.+.++--+++.+ +++.
T Consensus 140 L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~ 219 (438)
T COG2270 140 LPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILN 219 (438)
T ss_pred hhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhc
Confidence 999999888787777644333344444333322111111 223456666665555444444 3444
Q ss_pred cCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHH
Q 010317 209 MPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRR 288 (513)
Q Consensus 209 lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (513)
.|+.++- +....++. .+.-+++.+..++..+. +++
T Consensus 220 v~~~~~~---~~~~~~~l----------~~g~k~L~~t~k~i~~~----------------------~~i---------- 254 (438)
T COG2270 220 VHDAEKI---SSPPPTAL----------RNGFKELKSTFKEIRGR----------------------KNL---------- 254 (438)
T ss_pred ccccccc---cccchHHH----------HHHHHHHHHHHHHHhcc----------------------cch----------
Confidence 4544430 00000000 01111222222221110 000
Q ss_pred HHHHHHHHHHHhhhccchhhhccHHHHHH-hCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHH
Q 010317 289 MLIAAVGINFFMQASGNDAVIYYTPAVFK-GAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVG 367 (513)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~ 367 (513)
. .+.+..+.+..+.+.+......+-. ..+.+. ...........++..+++++.+++.||+|-|+++..+.+...+
T Consensus 255 --~-~FLiA~~~~~DGv~til~~~~~fg~~~~gls~-~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~ 330 (438)
T COG2270 255 --V-LFLIARFFYIDGVNTILAMGGVFGAADLGLSS-TELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSI 330 (438)
T ss_pred --H-HHHHHHHHHHhhHHHHHHHHHHHHHHHcCccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHH
Confidence 1 1112222333344444444433333 233322 3344566778889999999999999999999887765433222
Q ss_pred HHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 010317 368 SLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLS 447 (513)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~ 447 (513)
..+ .+ .. ...+...+ ...+....+..+..+.+-.|..++.|++.-+.-.|+.+..+|..+...+..+..
T Consensus 331 ~~~-~~---~~-~~~~~~f~------i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v 399 (438)
T COG2270 331 AAL-YL---IF-LEGELDFW------ILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAV 399 (438)
T ss_pred HHH-HH---HH-ccccHHHH------HHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHH
Confidence 211 11 11 11111111 111122233344455667788999999999999999999999988888777766
Q ss_pred HHHhcc-cchhHHHHHHHHHHHHHhhheecccCCCC
Q 010317 448 ISHRLS-FGGTFFLLAGITTVGTIFFYVFLPETKGK 482 (513)
Q Consensus 448 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 482 (513)
..+..+ ....+.....+..++.+. +...|+.+++
T Consensus 400 ~t~iTg~~r~g~~~i~vll~iGl~~-L~~v~~~~~~ 434 (438)
T COG2270 400 ITQITGSSRAGVLSIIVLLLIGLLL-LLRVKVPGRR 434 (438)
T ss_pred HHHHhcchhhHHHHHHHHHHhhHhh-EEeecCCCCc
Confidence 554332 333455555555555444 4555655333
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3e-10 Score=115.79 Aligned_cols=149 Identities=13% Similarity=0.087 Sum_probs=99.8
Q ss_pred HHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccc----cCchHH-HHHHHHHHHHHHHHHHhcCc------HHHHH
Q 010317 56 LYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDY----IGRRYT-IVVAAATFLVGALAMGLAPN------YPFLI 124 (513)
Q Consensus 56 ~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr----~GRr~~-~~~~~~~~~i~~~~~~~~~~------~~~l~ 124 (513)
.+..+.+|+++...+.+..+.-+--++..++.|.++|| +|||+. ++++.+..+++..+.-..++ ..-+.
T Consensus 34 ~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~ 113 (460)
T PRK11462 34 FFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAA 113 (460)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence 35667789999999999988889999999999999995 798655 45565666666665554543 22233
Q ss_pred HHHHHhhhhcccccccccceeeccCC-CcccccccchhhHHHHHHHHHHHHHHHHh-cCC---CCCcchHHHHHhhhHHH
Q 010317 125 VGRMIAGIGVGYSLMISPVYTAEISP-TMKRGFLTSLPEVFIVLGILSGYVFNYAL-SGL---PGNINWRIMLGLAAVPA 199 (513)
Q Consensus 125 ~~R~l~G~~~g~~~~~~~~~~~e~~p-~~~R~~~~~~~~~~~~~G~~~~~~~~~~~-~~~---~~~~~Wr~~~~~~~~~~ 199 (513)
+.-.+..++-......-.++.+|+.+ .++|.+.++.-..+..+|..++.++...+ ... ....+|+....+.++++
T Consensus 114 ~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~ 193 (460)
T PRK11462 114 ITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVA 193 (460)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence 34444455555555555577888877 67899999988888887766665553222 111 12247888777666665
Q ss_pred HHHHH
Q 010317 200 AVIGV 204 (513)
Q Consensus 200 ~i~~~ 204 (513)
++...
T Consensus 194 ~i~~~ 198 (460)
T PRK11462 194 FMMLA 198 (460)
T ss_pred HHHHH
Confidence 54443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-11 Score=109.52 Aligned_cols=121 Identities=17% Similarity=0.198 Sum_probs=98.2
Q ss_pred cchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhcccccc-ccCchHHHHHHHHHHHHHHHHHH---hcCcHHHHHHH
Q 010317 51 MSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSD-YIGRRYTIVVAAATFLVGALAMG---LAPNYPFLIVG 126 (513)
Q Consensus 51 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d-r~GRr~~~~~~~~~~~i~~~~~~---~~~~~~~l~~~ 126 (513)
.+..-.+.++|.|++.++..++.|+|..-..+-.+++|++.| |+|-|..-++-+....++-.+.+ ....+++++++
T Consensus 63 p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~G 142 (459)
T KOG4686|consen 63 PGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAG 142 (459)
T ss_pred chhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 333344677888899999999999999999999999999999 57887777766666667766655 45789999999
Q ss_pred HHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHH
Q 010317 127 RMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILS 171 (513)
Q Consensus 127 R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~ 171 (513)
||+.|+|.-...+....|..-|+..|+-+.++++.....-+|...
T Consensus 143 RF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gstv 187 (459)
T KOG4686|consen 143 RFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTV 187 (459)
T ss_pred heeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhcee
Confidence 999999988888888899999999999999998866655566443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.8e-11 Score=113.90 Aligned_cols=278 Identities=12% Similarity=0.107 Sum_probs=163.1
Q ss_pred HhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCC--C--------
Q 010317 115 GLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLP--G-------- 184 (513)
Q Consensus 115 ~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~--~-------- 184 (513)
+...+|..++++-|+.|.|.+...+....|++++.|++++++.+++.+.++.+|..+++++...+.... +
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 456789999999999999999999999999999999999999999999999999999998866543211 0
Q ss_pred ---CcchHHHHHhhhHHHHHHHHHHhc--cCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCC
Q 010317 185 ---NINWRIMLGLAAVPAAVIGVGVLI--MPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPD 259 (513)
Q Consensus 185 ---~~~Wr~~~~~~~~~~~i~~~~~~~--lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (513)
...||+.+++.++..++..+.+.+ +||.+. ++. ++. +. .+
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~--------~~~---------------~~~-----------~~-~~ 129 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE--------ADV---------------ARV-----------SS-GD 129 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc--------ccc---------------ccc-----------cc-cc
Confidence 147999988665554444443333 355321 000 000 00 00
Q ss_pred CCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhC---CCCCchhHHHHHHHHhH
Q 010317 260 DDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGA---GIHRKPVLFGINVVMGL 336 (513)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~~~~~~~~~~~~ 336 (513)
. .+ .+.. ++++......+..+.+...-.....|.+.++++. +.+...... .......
T Consensus 130 ~--------~~----~~~~-------~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~-~~s~~~~ 189 (310)
T TIGR01272 130 T--------TQ----KTSA-------FQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAH-FTAYTWG 189 (310)
T ss_pred c--------cc----hhhH-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHH-HHHHHHH
Confidence 0 00 0001 1111111122333444444455667888888643 333222222 3344556
Q ss_pred HHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecc
Q 010317 337 AKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSE 416 (513)
Q Consensus 337 ~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 416 (513)
+..++.++++++.||+|+|+.+.++...++...++... ... ... ...+... +++.....|.......+
T Consensus 190 ~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~-----~~~--~~~-~~~~~l~----g~~~s~i~P~~~s~a~~ 257 (310)
T TIGR01272 190 GAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAAL-----THG--YVA-MWFVLAL----GLFNSIMFPTIFSLALN 257 (310)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-----cCC--HHH-HHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 77889999999999999988876665444333222111 111 111 1111111 22222233444555667
Q ss_pred cCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Q 010317 417 IFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLL 461 (513)
Q Consensus 417 l~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (513)
.+|.+ .+++.++. .++.+++.+.+.+...+.+..+...+|++.
T Consensus 258 ~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~ 300 (310)
T TIGR01272 258 ALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALP 300 (310)
T ss_pred hhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence 77765 45566664 567777777777788787877766666533
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-12 Score=110.39 Aligned_cols=136 Identities=26% Similarity=0.390 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcc
Q 010317 74 GILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMK 153 (513)
Q Consensus 74 s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~ 153 (513)
+.+.++..+++++.|+++||+|||+.+..+..+..++.+...+..+++.+.+.+++.|++.+...+....++.|..|+++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE 84 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence 45567888999999999999999999999999999999988889999999999999999999888888899999999999
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHH-HhccCCC
Q 010317 154 RGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVG-VLIMPES 212 (513)
Q Consensus 154 R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~-~~~lpEs 212 (513)
|++..+..+....+|..+++.+...+. +..+||+.+++.++..++..+. .++.||+
T Consensus 85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 85 RGVALGLMSAGIALGPLLGPPLGGVLA---QFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred hhHHHHHHHHhHHHHHHHhHHhHHHHh---cccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999888888888877655443 3458999988877665554443 4445654
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-09 Score=108.18 Aligned_cols=149 Identities=19% Similarity=0.210 Sum_probs=106.6
Q ss_pred HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccc----cCc-hHHHHHHHHHHHHHHHHHHhcCcH------HHHHH
Q 010317 57 YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDY----IGR-RYTIVVAAATFLVGALAMGLAPNY------PFLIV 125 (513)
Q Consensus 57 ~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr----~GR-r~~~~~~~~~~~i~~~~~~~~~~~------~~l~~ 125 (513)
+..+.+|++....|.+..+-=+--++..++.|.++|| +|| |+.++.+.+-.++.+.++-.++++ .-.++
T Consensus 38 fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~v 117 (467)
T COG2211 38 FYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALV 117 (467)
T ss_pred HHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHH
Confidence 4667789999999998888888889999999999995 676 566777778888888888887742 23445
Q ss_pred HHHHhhhhcccccccccceeeccCC-CcccccccchhhHHHHHHHHHHHHHHHHh-cCC---CCCcchHHHHHhhhHHHH
Q 010317 126 GRMIAGIGVGYSLMISPVYTAEISP-TMKRGFLTSLPEVFIVLGILSGYVFNYAL-SGL---PGNINWRIMLGLAAVPAA 200 (513)
Q Consensus 126 ~R~l~G~~~g~~~~~~~~~~~e~~p-~~~R~~~~~~~~~~~~~G~~~~~~~~~~~-~~~---~~~~~Wr~~~~~~~~~~~ 200 (513)
.-++.+++-......-.++.+|+.+ +++|.+..+.-+.+..+|.++..++...+ ... ....||+..-++.++.++
T Consensus 118 tY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~ 197 (467)
T COG2211 118 TYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGV 197 (467)
T ss_pred HHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHH
Confidence 5566666666555555677888765 55799999988888888866655543322 222 224588877766666655
Q ss_pred HHHHH
Q 010317 201 VIGVG 205 (513)
Q Consensus 201 i~~~~ 205 (513)
+..+.
T Consensus 198 i~~l~ 202 (467)
T COG2211 198 ILLLF 202 (467)
T ss_pred HHHHH
Confidence 55443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=122.43 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=119.9
Q ss_pred HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhccc
Q 010317 57 YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGY 136 (513)
Q Consensus 57 ~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~ 136 (513)
++++++|.++.+.++..+...++..++.++.|+++||+|||+.+..+.....+......+.++.+.+++.|++.+++.|.
T Consensus 242 ~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~ 321 (393)
T PRK15011 242 FIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGI 321 (393)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 57788999999999988887788889999999999999999988877766655555555667888888899988887776
Q ss_pred ccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHhccCC
Q 010317 137 SLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIMPE 211 (513)
Q Consensus 137 ~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~~lpE 211 (513)
..+....+..|..|. +|+.++++++....+|..+++.+...+. +..+|+..+++.+++.++..+..+.+||
T Consensus 322 ~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 322 LGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVA---EIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 666666778898885 5899999988888888888877765544 2458999998888777777666666665
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-09 Score=104.56 Aligned_cols=149 Identities=24% Similarity=0.265 Sum_probs=118.4
Q ss_pred HHHHhhhC----CCchhHHHHHHHHHHHHHHHHhhcccccccc-CchHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHH
Q 010317 56 LYIKEDLE----ITEVQVEVLVGILNVFSLIGSLASGKTSDYI-GRRYTIVVAAATFLVGALAMGLAP--NYPFLIVGRM 128 (513)
Q Consensus 56 ~~~~~~~~----~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~-GRr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~R~ 128 (513)
.|+..+++ +++++..-+.+.|..-.=+..+++|+++||+ |+|+++..+.+++.++.++.+.++ +...+.++-.
T Consensus 46 ~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~ 125 (498)
T COG3104 46 LYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLA 125 (498)
T ss_pred HHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHH
Confidence 35555555 9999887777777766667889999999987 999999999999999999999884 7888999999
Q ss_pred HhhhhcccccccccceeeccCCCcc--cccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHH
Q 010317 129 IAGIGVGYSLMISPVYTAEISPTMK--RGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGV 206 (513)
Q Consensus 129 l~G~~~g~~~~~~~~~~~e~~p~~~--R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~ 206 (513)
+.++|.|..=+.....+.|..|+++ |-...+++....++|.++++++...+. .+.+|+..|...++-..+..+.+
T Consensus 126 ~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~---~~~g~~~gF~~aavGm~~gl~~f 202 (498)
T COG3104 126 LIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLA---INYGWHVGFGLAAVGMIIGLVIF 202 (498)
T ss_pred HHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHH---HhhCHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888889999988664 444555556667789888888766655 35689999988776655544444
Q ss_pred h
Q 010317 207 L 207 (513)
Q Consensus 207 ~ 207 (513)
.
T Consensus 203 ~ 203 (498)
T COG3104 203 L 203 (498)
T ss_pred H
Confidence 3
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.2e-12 Score=132.49 Aligned_cols=140 Identities=16% Similarity=0.102 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcccccccccceeeccC
Q 010317 70 EVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEIS 149 (513)
Q Consensus 70 ~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~ 149 (513)
.+...+..++..+|.++.|+++||+|||+++.+++++++++.++.+++++...+++.+++.|++.++..+....+++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44566677899999999999999999999999999999999999999999888889999999988888888889999999
Q ss_pred CCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHhccCCCc
Q 010317 150 PTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIMPESP 213 (513)
Q Consensus 150 p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~~lpEsp 213 (513)
|++.|++++++......+|.++++.+...+.. .+....|++.++..++..+...++||+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~----~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVG----ITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999998877643321 1345677777777666666667789985
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-11 Score=119.26 Aligned_cols=155 Identities=23% Similarity=0.298 Sum_probs=125.7
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccchhh-HHHHh-hhCCCchhHHHHHHHHHHHHHHHHhhccccccccCc-hHHHHHHH
Q 010317 28 KYAFICALLASINSILLGYDIGVMSGAV-LYIKE-DLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGR-RYTIVVAA 104 (513)
Q Consensus 28 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~-~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GR-r~~~~~~~ 104 (513)
+.+|..+.+..+.+++.+.+.+++.+.. ||+++ |.+-+.+-.|++.++..+|.+++++.+|+...|.|. |+-++.+.
T Consensus 30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ 109 (488)
T KOG2325|consen 30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF 109 (488)
T ss_pred CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence 3456677777788888888887777654 66665 667777789999999999999999999999999997 88889999
Q ss_pred HHHHHHHHHH-Hh---cC-cHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHh
Q 010317 105 ATFLVGALAM-GL---AP-NYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYAL 179 (513)
Q Consensus 105 ~~~~i~~~~~-~~---~~-~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 179 (513)
++..+++++. ++ .+ ..+.++++|++.|+|.|.... .-.|+++....++|-++.+....+..+|..+|+.+...+
T Consensus 110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~-lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f 188 (488)
T KOG2325|consen 110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAV-LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF 188 (488)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHH-HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence 9999998877 32 23 567889999999999887643 458999988888899998888888888888888887777
Q ss_pred cCCC
Q 010317 180 SGLP 183 (513)
Q Consensus 180 ~~~~ 183 (513)
.++.
T Consensus 189 ~~Lg 192 (488)
T KOG2325|consen 189 TPLG 192 (488)
T ss_pred hhhc
Confidence 6543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-12 Score=134.17 Aligned_cols=286 Identities=13% Similarity=0.158 Sum_probs=3.0
Q ss_pred hhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhc----C--
Q 010317 45 GYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLA----P-- 118 (513)
Q Consensus 45 g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~----~-- 118 (513)
+...+.++.+++.+++.|++++++.|++.+.+-++..+..++..++.+|.-|-+++-++.++.+++++++++= .
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y 95 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPY 95 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCC
Confidence 4445556677788999999999999999999999999999999999999999999999999999998876541 0
Q ss_pred --------------------------------------------cHHHHHHHHHHhhhhcccccccccceeeccCCCccc
Q 010317 119 --------------------------------------------NYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKR 154 (513)
Q Consensus 119 --------------------------------------------~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R 154 (513)
-+..++++.++.|+|....+++...|+-|..+++.-
T Consensus 96 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~s 175 (539)
T PF03137_consen 96 SYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNS 175 (539)
T ss_dssp --------------------------------------------------------SSS---------------------
T ss_pred ccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccC
Confidence 024688999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHhcCC----C-----------CCc----chHHHHHhhhHHHHHHHHHHhccCCCchh
Q 010317 155 GFLTSLPEVFIVLGILSGYVFNYALSGL----P-----------GNI----NWRIMLGLAAVPAAVIGVGVLIMPESPRW 215 (513)
Q Consensus 155 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~----~-----------~~~----~Wr~~~~~~~~~~~i~~~~~~~lpEsp~~ 215 (513)
+...|+......+|..+|++++..+..+ . .+. .|..-|++.++..++..+.++++|+...-
T Consensus 176 plYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~ 255 (539)
T PF03137_consen 176 PLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPG 255 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC
Confidence 9999998888888888888776544311 0 011 25445555555555555556666654211
Q ss_pred HHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHH
Q 010317 216 LVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVG 295 (513)
Q Consensus 216 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (513)
. +++.++.+.. ..+.++ ...++ .. +++.. .......+++.....+.++++.+....
T Consensus 256 ~--~~~~~~~~~~-----~~~~~~-~~~~~---------~~--~~~~~-----~~~~~~~~df~~~l~~Ll~Np~f~~~~ 311 (539)
T PF03137_consen 256 T--SERQEEKESS-----ERKEED-SDKDS---------FK--DPKSK-----KSFGKSIKDFPKALKRLLTNPVFMCLI 311 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c--ccccchhhhh-----hcchhh-hhhhc---------cc--ccccc-----cchhhhhhhHHHHHHHHhcChHHHHHH
Confidence 0 0000000000 000000 00000 00 00000 000011222322223344555555555
Q ss_pred HHHHhhhccchhhhccHHHHHHhC-CCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCC
Q 010317 296 INFFMQASGNDAVIYYTPAVFKGA-GIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGR 354 (513)
Q Consensus 296 ~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gr 354 (513)
+..........++..|.|++++.. +..............--+..+|.+++|++++|+.-
T Consensus 312 la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl 371 (539)
T PF03137_consen 312 LAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKL 371 (539)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecC
Confidence 555666677788889999999743 33333333323333333566788999999998743
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.3e-10 Score=117.70 Aligned_cols=289 Identities=15% Similarity=0.184 Sum_probs=194.9
Q ss_pred HHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHH
Q 010317 36 LASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMG 115 (513)
Q Consensus 36 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~ 115 (513)
+..+..+..++..+.++..+..+++.|++++++.|++.+.+-+|..+...+..++.-|.-|-+.+-++++++++++++++
T Consensus 101 ~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~a 180 (735)
T KOG3626|consen 101 LLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFA 180 (735)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHh
Confidence 33455566677667888888999999999999999999999999999999999999999999999999999999999887
Q ss_pred hc--------------------C---------------------------c-----HHHHHHHHHHhhhhcccccccccc
Q 010317 116 LA--------------------P---------------------------N-----YPFLIVGRMIAGIGVGYSLMISPV 143 (513)
Q Consensus 116 ~~--------------------~---------------------------~-----~~~l~~~R~l~G~~~g~~~~~~~~ 143 (513)
+- + + +..++++.++.|+|....++....
T Consensus 181 lPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGis 260 (735)
T KOG3626|consen 181 LPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGIS 260 (735)
T ss_pred ChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCc
Confidence 52 0 0 126778899999999999999999
Q ss_pred eeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCC--------------c--chHHHHHhhhHHHHHHHHHHh
Q 010317 144 YTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGN--------------I--NWRIMLGLAAVPAAVIGVGVL 207 (513)
Q Consensus 144 ~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~--------------~--~Wr~~~~~~~~~~~i~~~~~~ 207 (513)
|+-|....++-....++......+|.++|++++..+..+... | .|..-|++.+...++..+.++
T Consensus 261 YiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f 340 (735)
T KOG3626|consen 261 YIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLF 340 (735)
T ss_pred cccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888888888888877665322111 1 266667777777777777777
Q ss_pred ccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHH
Q 010317 208 IMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVR 287 (513)
Q Consensus 208 ~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (513)
++|....- ..++.++++ . +..++. .+..+. ........+++...-.+.+.
T Consensus 341 ~fPk~lp~---~~~~~~~~~----~---------------~~~k~~-~~~~~~-------~~~~~~~ikdfp~s~~~ll~ 390 (735)
T KOG3626|consen 341 FFPKELPK---SQKRKRARD----L---------------HVLKTE-SGGAKS-------DKTFGKKIKDFPKSIKRLLS 390 (735)
T ss_pred hCcccCcc---ccccchhhh----h---------------cccccc-cccccC-------CcchhhhHHHHHHHHHHHhc
Confidence 77755320 000000000 0 000000 000000 00001112222222222334
Q ss_pred HHHHHHHHHHHHhhhccchhhhccHHHHHHh-CCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCC
Q 010317 288 RMLIAAVGINFFMQASGNDAVIYYTPAVFKG-AGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGR 354 (513)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gr 354 (513)
..++....+....+...+.++..|+|++++. .+............+.--+..+|.+++|+++.|+.-
T Consensus 391 N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl 458 (735)
T KOG3626|consen 391 NPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKL 458 (735)
T ss_pred CchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecc
Confidence 4455555555566777788889999999964 444444333333334444556777899999988754
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-10 Score=113.46 Aligned_cols=154 Identities=21% Similarity=0.349 Sum_probs=132.4
Q ss_pred chhhHHHHhh-hCCCchhHHHHHHHHHHHHHHHHhhccccccccCchH-HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 010317 52 SGAVLYIKED-LEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRY-TIVVAAATFLVGALAMGLAPNYPFLIVGRMI 129 (513)
Q Consensus 52 ~~~~~~~~~~-~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~-~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l 129 (513)
....|.+.++ +|.++.+.++..+...++..++.++.++++||+|||+ .+..+..+..++.....+.++...+.+..++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 274 (352)
T cd06174 195 LTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLL 274 (352)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3344444444 4889999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred hhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHhc
Q 010317 130 AGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLI 208 (513)
Q Consensus 130 ~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~~ 208 (513)
.|++.+...+....++.|..|+++|++..++.+....+|..+++.+...+. +..+|++.+++.++..++..+..++
T Consensus 275 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~---~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 275 LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL---DTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccCcchHHHHHHHHHHHHHHHhee
Confidence 999999999999999999999999999999999998888888877655443 2558999999888877766655443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.8e-11 Score=118.03 Aligned_cols=147 Identities=13% Similarity=0.169 Sum_probs=116.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcC----cHHHHHHHHHHhhhhccccccccc
Q 010317 67 VQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAP----NYPFLIVGRMIAGIGVGYSLMISP 142 (513)
Q Consensus 67 ~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~----~~~~l~~~R~l~G~~~g~~~~~~~ 142 (513)
.+.+...++..++..++.++.|+++||+|||+++.++.++..++........ ++..+++.+++.|++.+...+...
T Consensus 251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~ 330 (418)
T TIGR00889 251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS 330 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668888989999999999999999999999999999999988876666532 245677889999999988888888
Q ss_pred ceeeccCCCcccccccchhh-HHHHHHHHHHHHHHHHhcCCCCC---cchHHHHHhhhHHHHHHHH-HHhccCCCc
Q 010317 143 VYTAEISPTMKRGFLTSLPE-VFIVLGILSGYVFNYALSGLPGN---INWRIMLGLAAVPAAVIGV-GVLIMPESP 213 (513)
Q Consensus 143 ~~~~e~~p~~~R~~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~---~~Wr~~~~~~~~~~~i~~~-~~~~lpEsp 213 (513)
.+++|.+|+++|++..++.+ ..+.+|..+++.++..+....+. .|||+.|.+.++..++..+ ..+++||+.
T Consensus 331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 89999999999999999997 56788888887776544322221 5799999887776555444 456677773
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-10 Score=115.24 Aligned_cols=143 Identities=16% Similarity=0.120 Sum_probs=117.6
Q ss_pred HHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHhhhh
Q 010317 56 LYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNY--PFLIVGRMIAGIG 133 (513)
Q Consensus 56 ~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~R~l~G~~ 133 (513)
+...++++.++.+.++..+.+.++..++.++.|+++||+|||+.+.++..+..++.....+.++. ..+++..++.|++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 308 (377)
T TIGR00890 229 KPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFT 308 (377)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHH
Confidence 34557788888889999999999999999999999999999999999999888888777776643 2345667888888
Q ss_pred cccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHH
Q 010317 134 VGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAV 201 (513)
Q Consensus 134 ~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i 201 (513)
.|...+..+.++.|.+|+++|++..++.+....+|..+++.+...+. +..||++.|++.++..++
T Consensus 309 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~---~~~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 309 WGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL---TEIGFEYTFIVTGAFALT 373 (377)
T ss_pred hccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH---hhhchhhHHHHHHHHHHH
Confidence 88877777888999999999999999999888888888877654443 345899999887765554
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-10 Score=116.32 Aligned_cols=141 Identities=11% Similarity=0.004 Sum_probs=112.7
Q ss_pred hCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcccccccc
Q 010317 62 LEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMIS 141 (513)
Q Consensus 62 ~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~ 141 (513)
.+.+..+.+++.++..++..++.+++|+++||+|||+.+..+.++..++..+.+++++.+.+++.+++.|++.+......
T Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 336 (420)
T PRK09528 257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV 336 (420)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666778999999999999999999999999999999999999999988888899999999999999999887776666
Q ss_pred cceeeccCCCcccccccch-hhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHH
Q 010317 142 PVYTAEISPTMKRGFLTSL-PEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVG 205 (513)
Q Consensus 142 ~~~~~e~~p~~~R~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~ 205 (513)
..++.|..|++.|+...+. ++....+|..+++.+...+. +..|||..|.+.++..++..+.
T Consensus 337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~---~~~G~~~~f~~~~~~~~i~~~~ 398 (420)
T PRK09528 337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLY---DSIGFQGTYLILGGIVLLFTLI 398 (420)
T ss_pred HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHH---HhhCchHHHHHHHHHHHHHHHH
Confidence 7888999999999877654 45556677766655543332 2448999998877665544443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.5e-10 Score=110.53 Aligned_cols=151 Identities=16% Similarity=0.155 Sum_probs=118.2
Q ss_pred HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhccc
Q 010317 57 YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGY 136 (513)
Q Consensus 57 ~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~ 136 (513)
++++++|.++.+.++..+.......++.++.|+++||+|||+.+.++.++..+......+.++.+.+.+.+++.|++.|.
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI 304 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999888877777788999999999999999999888777666655556677888888899999998887
Q ss_pred ccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHhccCC
Q 010317 137 SLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIMPE 211 (513)
Q Consensus 137 ~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~~lpE 211 (513)
..+....+..|..|. +|+...++++....+|..+++.+...+. +..+|+..|++.++..++..+...+++|
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILA---ERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhccchhHHHHHHHHHHHHHHHHheecC
Confidence 777777788898876 4568888888777788887776654433 2348999998888777766665555543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2e-09 Score=110.95 Aligned_cols=160 Identities=14% Similarity=0.050 Sum_probs=111.3
Q ss_pred hhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcC--cH-H-HHHHHHHH
Q 010317 54 AVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAP--NY-P-FLIVGRMI 129 (513)
Q Consensus 54 ~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~--~~-~-~l~~~R~l 129 (513)
..|.+.++.|.+..+..+......+...++.+++++++||+|||+.+..+.++..++....+... +. . ....+-++
T Consensus 293 ~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~ 372 (479)
T PRK10077 293 YAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLF 372 (479)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 34677788888877777777778888899999999999999999999999999888877665431 21 1 22223333
Q ss_pred hhhhcccc-cccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhc---CCCCCcchHHHHHhhhHHHHHHHHH
Q 010317 130 AGIGVGYS-LMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALS---GLPGNINWRIMLGLAAVPAAVIGVG 205 (513)
Q Consensus 130 ~G~~~g~~-~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~---~~~~~~~Wr~~~~~~~~~~~i~~~~ 205 (513)
.+.+.+.. .+....+++|.+|+++|+.++++......+|..++..+...+. ...+..+|++.|++.++..++..+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (479)
T PRK10077 373 YVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALF 452 (479)
T ss_pred HHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHH
Confidence 44433332 2456688999999999999999988887777776644432222 1223567888888777665544443
Q ss_pred -HhccCCCc
Q 010317 206 -VLIMPESP 213 (513)
Q Consensus 206 -~~~lpEsp 213 (513)
+++.||++
T Consensus 453 ~~~~~~e~~ 461 (479)
T PRK10077 453 MWKFVPETK 461 (479)
T ss_pred HHhccccCC
Confidence 45678875
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-09 Score=109.16 Aligned_cols=146 Identities=16% Similarity=0.129 Sum_probs=113.4
Q ss_pred hhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcccccc
Q 010317 60 EDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLM 139 (513)
Q Consensus 60 ~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~ 139 (513)
.+.|. ++.++..+.+.++..++.++.|++.||+|||+.+..+..+..++....++.++...+++.+++.|++.+...+
T Consensus 244 ~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~ 321 (399)
T PRK05122 244 AARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFP 321 (399)
T ss_pred HHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHH
Confidence 34454 3445667788889999999999999999999999999888888888888888888888899999999988777
Q ss_pred cccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHhccC
Q 010317 140 ISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIMP 210 (513)
Q Consensus 140 ~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~~lp 210 (513)
.......|..|+++|++..++++....+|..+++.+...+. +..||++.+++.++..++..+..+.++
T Consensus 322 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~---~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (399)
T PRK05122 322 ALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVA---SWFGYPSIFLAAALAALLGLALTWLLY 389 (399)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66667788999999999999988888777665544432222 245899999887776666555444343
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-09 Score=110.61 Aligned_cols=153 Identities=16% Similarity=0.077 Sum_probs=106.0
Q ss_pred hhhH-HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHH--HHhcCcHHHHHHHHHH
Q 010317 53 GAVL-YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALA--MGLAPNYPFLIVGRMI 129 (513)
Q Consensus 53 ~~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~--~~~~~~~~~l~~~R~l 129 (513)
.-.| ++++++|.+..+.++..+.+.++..+|.+++|+++||+|||+.+.....+..++... .....+...+.+.+++
T Consensus 279 ~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (467)
T PRK09556 279 NWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFA 358 (467)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3345 677889999999999999999999999999999999999998877665544443322 2334566677788888
Q ss_pred hhhhcccccccccceeeccCCCcccccccchhhHHHHH-HHHHH-HHHHHHhcC-C-------CCCcchHHHHHhhhHHH
Q 010317 130 AGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVL-GILSG-YVFNYALSG-L-------PGNINWRIMLGLAAVPA 199 (513)
Q Consensus 130 ~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-G~~~~-~~~~~~~~~-~-------~~~~~Wr~~~~~~~~~~ 199 (513)
.|+...+.......+..|..|++.||.+.++.+....+ |..++ .+.+..... . ....+|+..|++..+..
T Consensus 359 ~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~ 438 (467)
T PRK09556 359 LGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAA 438 (467)
T ss_pred HHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHH
Confidence 88654433333335567999999999999998766554 53443 334444430 0 01457999998876655
Q ss_pred HHHHHH
Q 010317 200 AVIGVG 205 (513)
Q Consensus 200 ~i~~~~ 205 (513)
++..+.
T Consensus 439 ~~~~~~ 444 (467)
T PRK09556 439 IGCICL 444 (467)
T ss_pred HHHHHH
Confidence 554443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-09 Score=108.43 Aligned_cols=151 Identities=18% Similarity=0.154 Sum_probs=118.5
Q ss_pred hHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhc
Q 010317 55 VLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGV 134 (513)
Q Consensus 55 ~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~ 134 (513)
.|.+.++.|.+..+.+...+...++..++.++.|+++||+|||+.+.++.+...++.....+.++...+.+.-++.|++.
T Consensus 243 ~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 322 (406)
T PRK11551 243 LPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFV 322 (406)
T ss_pred HHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 45666678999999999999999999999999999999999999998877777777666677788887878888888887
Q ss_pred ccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHh
Q 010317 135 GYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVL 207 (513)
Q Consensus 135 g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~ 207 (513)
++..+....+..|..|+++|++..++.+....+|..+++.+...+.. ...+|...++......++..+..+
T Consensus 323 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~--~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 323 VGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA--LGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc--cCCchHHHHHHHHHHHHHHHHHHH
Confidence 77777777889999999999999999988888888888776544332 123566666665554444444433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-09 Score=109.86 Aligned_cols=161 Identities=12% Similarity=-0.003 Sum_probs=114.4
Q ss_pred ccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHh-----cC------
Q 010317 50 VMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGL-----AP------ 118 (513)
Q Consensus 50 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~-----~~------ 118 (513)
.+....|.+.++.|.+..+.++......++..++.++.|+++||+|||+.+.++.++..++..+.++ ..
T Consensus 302 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (481)
T TIGR00879 302 AIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSS 381 (481)
T ss_pred ehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccch
Confidence 3444557777888998888888898999999999999999999999999999998888777666652 11
Q ss_pred cHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHH
Q 010317 119 NYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVP 198 (513)
Q Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~ 198 (513)
+...+....++.+....+..+....++.|..|++.|+...++......+|..+++.+...+. ++.+|++.|++.++.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~---~~~~~~~~f~~~~~~ 458 (481)
T TIGR00879 382 GNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML---ESIGVGGVFIFFGGL 458 (481)
T ss_pred hHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCccceehhHHHH
Confidence 22223333333332222333555567799999999999999998888888777766543332 234799888887776
Q ss_pred HHHHHHH-HhccCCCc
Q 010317 199 AAVIGVG-VLIMPESP 213 (513)
Q Consensus 199 ~~i~~~~-~~~lpEsp 213 (513)
+++..+. .++.||++
T Consensus 459 ~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 459 NVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHHHheecccCC
Confidence 6555444 45667765
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-09 Score=108.07 Aligned_cols=139 Identities=19% Similarity=0.122 Sum_probs=103.8
Q ss_pred HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHH--HHHHh--cCcHHHHHHHHHHhhh
Q 010317 57 YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGA--LAMGL--APNYPFLIVGRMIAGI 132 (513)
Q Consensus 57 ~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~--~~~~~--~~~~~~l~~~R~l~G~ 132 (513)
+++++++.++.+.+...+...++..++.++.|+++||+|||+.+.....+..+.. ....+ ..+...+.+..++.|+
T Consensus 245 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (394)
T TIGR00883 245 YLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLAL 324 (394)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 4557889999999999999999999999999999999999998876655444433 22222 2466777778888999
Q ss_pred hcccccccccceeeccCCCcccccccchh-hHHHHHHHHHHHHHHHHhcCCCCCcc-hHHHHHhhhHH
Q 010317 133 GVGYSLMISPVYTAEISPTMKRGFLTSLP-EVFIVLGILSGYVFNYALSGLPGNIN-WRIMLGLAAVP 198 (513)
Q Consensus 133 ~~g~~~~~~~~~~~e~~p~~~R~~~~~~~-~~~~~~G~~~~~~~~~~~~~~~~~~~-Wr~~~~~~~~~ 198 (513)
+.+...+....++.|.+|+++|+++.++. +....+|..+++.+...+.. ..+ |++.++...+.
T Consensus 325 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~---~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 325 IGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA---MTGDWYAIGYYLAAL 389 (394)
T ss_pred HHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH---HcCcchhHHHHHHHH
Confidence 88888888889999999999999999874 45556676666655444332 234 88776665543
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.1e-09 Score=105.81 Aligned_cols=156 Identities=15% Similarity=0.076 Sum_probs=105.7
Q ss_pred HHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHh---c-CcHHHHHHHHHHhh
Q 010317 56 LYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGL---A-PNYPFLIVGRMIAG 131 (513)
Q Consensus 56 ~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~---~-~~~~~l~~~R~l~G 131 (513)
+++++++|.+.........+..+...++.++.|+++||+|||+++..+.++..++...... . ++...+++..++.|
T Consensus 275 ~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (438)
T PRK09952 275 NYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLAN 354 (438)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567788888876655555666677888999999999999999998887766555433322 2 23444455667777
Q ss_pred hhcccccccccceeeccCCCcccccccchhh-HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHhccC
Q 010317 132 IGVGYSLMISPVYTAEISPTMKRGFLTSLPE-VFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIMP 210 (513)
Q Consensus 132 ~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~~lp 210 (513)
++.+...+....+++|.+|.+.|+...++.. ....+|..+++.+...+.... ..+|+..+.+.++..++..+..+.++
T Consensus 355 ~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~-~~~~~~~~~~~~~~~~i~~v~~~~~~ 433 (438)
T PRK09952 355 IAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF-GGSWHSVAIYLLAGCLISAMTALLMK 433 (438)
T ss_pred HHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHHcc
Confidence 8877777777889999999999988888743 334455555554433332111 12588888777777766666555566
Q ss_pred CC
Q 010317 211 ES 212 (513)
Q Consensus 211 Es 212 (513)
|+
T Consensus 434 ~~ 435 (438)
T PRK09952 434 DN 435 (438)
T ss_pred cc
Confidence 64
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-09 Score=106.38 Aligned_cols=141 Identities=15% Similarity=0.075 Sum_probs=113.4
Q ss_pred hhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcccccc
Q 010317 60 EDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLM 139 (513)
Q Consensus 60 ~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~ 139 (513)
++.+.+ +.++..+.+.++..+++++.|++.||+|||+.+..+..+..++..+..+.++...+.+.+++.|++.+...+
T Consensus 244 ~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 321 (392)
T PRK12382 244 ASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFP 321 (392)
T ss_pred HhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHH
Confidence 444544 345566677888899999999999999999999999998888888888888888888899999999888777
Q ss_pred cccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHH
Q 010317 140 ISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVG 205 (513)
Q Consensus 140 ~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~ 205 (513)
.....+.|..|+++||+..+..+....+|..+++.+...+. +..||++.|.+.++..++..+.
T Consensus 322 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~---~~~g~~~~~~~~~~~~~~~~~~ 384 (392)
T PRK12382 322 ALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLA---TSFGYPSVFLAGAISAVLGIIV 384 (392)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCchHHHHHHHHHHHHHHHH
Confidence 77777889999999999999998888888877776654433 2458999999887766655443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.5e-09 Score=105.81 Aligned_cols=134 Identities=19% Similarity=0.179 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcccccccccceeecc
Q 010317 69 VEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEI 148 (513)
Q Consensus 69 ~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~ 148 (513)
.+.+.++..++..++.++.|+++||+|||+.+..+..+..++.+...+.++.+.+.+.+++.|++.+...+....++.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 45566677788889999999999999999999999988888887778888888899999999999998887777778888
Q ss_pred CCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHH
Q 010317 149 SPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVG 205 (513)
Q Consensus 149 ~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~ 205 (513)
.|+++||+..+.......+|..+++.+...+. +..+|++.|++.++..++..+.
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~---~~~g~~~~f~~~~~~~l~~~~~ 393 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS---ANYGFRAVFLVTAGVVLFNAVY 393 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHHHH---hhcchhHHHHHHHHHHHHHHHH
Confidence 99999999999988888889888887765543 3458999999887776665544
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.4e-09 Score=108.19 Aligned_cols=146 Identities=14% Similarity=0.143 Sum_probs=113.2
Q ss_pred hHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccc--cCchHHHHH--HHHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 010317 55 VLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDY--IGRRYTIVV--AAATFLVGALAMGLAPNYPFLIVGRMIA 130 (513)
Q Consensus 55 ~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr--~GRr~~~~~--~~~~~~i~~~~~~~~~~~~~l~~~R~l~ 130 (513)
+|.+.++.|.+..+.++..++..++..+++++.|+++|| +++|+...+ ++++..++.+...+.++++.+++.+++.
T Consensus 264 l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~ 343 (455)
T TIGR00892 264 LVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFF 343 (455)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 344456789999999999999999999999999999998 344444433 3343444555666788999999999999
Q ss_pred hhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCc-chHHHHHhhhHHHHHHH
Q 010317 131 GIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNI-NWRIMLGLAAVPAAVIG 203 (513)
Q Consensus 131 G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~Wr~~~~~~~~~~~i~~ 203 (513)
|++.+...+....++.|..|+++|+...++.+....+|..+++.+...+. +.. +|++.|++.++..++..
T Consensus 344 G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~---~~~g~~~~~f~~~~~~~li~~ 414 (455)
T TIGR00892 344 GLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLV---DATKNYKYIFYASGSIVVSAG 414 (455)
T ss_pred HHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeee---hhcCCcchHHHHhhHHHHHHH
Confidence 99998888888888999999999999999999888888888877654332 223 59999888777655443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-08 Score=103.52 Aligned_cols=181 Identities=13% Similarity=0.112 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHH
Q 010317 287 RRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMV 366 (513)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~ 366 (513)
|+..+....+.++...........+.|.+.++.+.+.... ........++..++.++.+++.||+|||+.+..+.+...
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDI-GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence 3333333333344443333455667888887766554332 224455667778889999999999999999887766555
Q ss_pred HHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 010317 367 GSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFL 446 (513)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~ 446 (513)
++.++.+.. .+.+......+. .++......+....+.+|.+|++.|+++.|+.+....+++.+.+....
T Consensus 100 ~~~~~~~~~-------~~~~~l~~~~~l----~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~ 168 (434)
T PRK11663 100 IINILFGFS-------SSLWAFALLWVL----NAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVG 168 (434)
T ss_pred HHHHHHHHH-------hHHHHHHHHHHH----HHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444321 111111111111 111111112344567789999999999999999888887766666656
Q ss_pred HHHHhcccchhHHHHHHHHHHHHHhhheecccC
Q 010317 447 SISHRLSFGGTFFLLAGITTVGTIFFYVFLPET 479 (513)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 479 (513)
.+.+..++.+.|.+.+++.++..+...+++||+
T Consensus 169 ~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 169 AIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 666666777888877766655544444555654
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.7e-09 Score=103.14 Aligned_cols=165 Identities=17% Similarity=0.119 Sum_probs=104.1
Q ss_pred cchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCC
Q 010317 304 GNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGST 383 (513)
Q Consensus 304 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (513)
......++.|.+.++.+.+.... ..+.....++..++.++.+++.||+|||+.+..+.....++.++.... .
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-------~ 103 (398)
T TIGR00895 32 DLAAMGFAAPAISAEWGLDPVQL-GFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA-------T 103 (398)
T ss_pred HHHHHHhhHHHHhhccCCCHHHH-HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc-------c
Confidence 33455567787777665443322 224445566778888999999999999999887765544444333321 1
Q ss_pred chhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHH
Q 010317 384 PTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAG 463 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (513)
+.+... ......++......+....+..|.+|++.|+.+.++......++..+.+.....+.+..++...+++.++
T Consensus 104 ~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~ 179 (398)
T TIGR00895 104 NVTQLL----ILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGI 179 (398)
T ss_pred chHHHH----HHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhh
Confidence 111111 1111112222223345567889999999999999998888887776666666566666677777777765
Q ss_pred HHHHHHHhhheecccCC
Q 010317 464 ITTVGTIFFYVFLPETK 480 (513)
Q Consensus 464 ~~~~~~~~~~~~~pet~ 480 (513)
+.++..+....++||+.
T Consensus 180 ~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 180 APLLLLLLLMRFLPESI 196 (398)
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 66666555566678764
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.5e-09 Score=106.76 Aligned_cols=160 Identities=16% Similarity=0.034 Sum_probs=97.9
Q ss_pred hHHHHhhhCCCchhHH-----------H-HHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcC----
Q 010317 55 VLYIKEDLEITEVQVE-----------V-LVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAP---- 118 (513)
Q Consensus 55 ~~~~~~~~~~s~~~~~-----------~-~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~---- 118 (513)
.|.+.++.|.+..+.+ . ...+..++..+|.+++++++||+|||+.++++..+.+++..+.++..
T Consensus 311 ~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~ 390 (502)
T TIGR00887 311 QKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS 390 (502)
T ss_pred cHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555567777543211 1 23334456677889999999999999999988887777665555421
Q ss_pred cHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHH-HHhcCCC------CCcchHHH
Q 010317 119 NYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFN-YALSGLP------GNINWRIM 191 (513)
Q Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~------~~~~Wr~~ 191 (513)
+...+...-+...++..+..+....+.+|.+|++.|++..++.+....+|..+++.+. +...... ...++...
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 470 (502)
T TIGR00887 391 THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHV 470 (502)
T ss_pred hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHH
Confidence 1111111111111222223345567789999999999999998888777777665543 3322110 02345556
Q ss_pred HHhhhHHHHHHHHHHhccCCCch
Q 010317 192 LGLAAVPAAVIGVGVLIMPESPR 214 (513)
Q Consensus 192 ~~~~~~~~~i~~~~~~~lpEsp~ 214 (513)
|++.++..++..+..+++||++.
T Consensus 471 ~~i~~~~~~~~~i~~~~lpEt~~ 493 (502)
T TIGR00887 471 LEIFALFMFLGILFTLLIPETKG 493 (502)
T ss_pred HHHHHHHHHHHHHHheEeccCCC
Confidence 66666666555555677899863
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=7e-09 Score=107.38 Aligned_cols=141 Identities=13% Similarity=0.035 Sum_probs=104.9
Q ss_pred hhH-HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHh
Q 010317 54 AVL-YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLA--PNYPFLIVGRMIA 130 (513)
Q Consensus 54 ~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~R~l~ 130 (513)
..| ++++++|.+..+.+++.+...++..+|.++.|+++||+|||+++.++.++..+..+..... .+...+.+..++.
T Consensus 297 ~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (496)
T PRK03893 297 LLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQ 376 (496)
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 344 4557899999999999999999999999999999999999999998877766665544333 3334444555555
Q ss_pred hhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhH
Q 010317 131 GIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAV 197 (513)
Q Consensus 131 G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~ 197 (513)
+....+.....+.++.|.+|+++|++.+++......+|..+++.+...+. +..+|+..+...+.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~---~~~g~~~~~~~~~~ 440 (496)
T PRK03893 377 QMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIA---QRLDLGTALASLSF 440 (496)
T ss_pred HHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHh---ccCChHHHHHHHHH
Confidence 44433344556678899999999999999988888888888877655544 35678877655443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-08 Score=101.97 Aligned_cols=161 Identities=14% Similarity=0.076 Sum_probs=103.2
Q ss_pred hccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHH
Q 010317 309 IYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVV 388 (513)
Q Consensus 309 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (513)
....|.+.++.+.+.... ........+...++.++.+++.||+|||+.+..+........++.+... +.+..
T Consensus 14 ~~~~~~~~~~~g~s~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 85 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQY-GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG-------AYVSL 85 (399)
T ss_pred hHhHHHHHHhhCCChhhH-HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc-------CHHHH
Confidence 344566555555544332 2345556677888899999999999999998877655544444433211 11111
Q ss_pred HHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 010317 389 VLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVG 468 (513)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (513)
..... ..+.......+....+.+|.+|++.|+.+.++......++..+.+.....+.+..++.+.+++.+++.++.
T Consensus 86 ~~~~~----l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (399)
T TIGR00893 86 YILRV----LLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIW 161 (399)
T ss_pred HHHHH----HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 11111 11222222234456788999999999999999998888877666666655666677788888887777776
Q ss_pred HHhhheecccCCC
Q 010317 469 TIFFYVFLPETKG 481 (513)
Q Consensus 469 ~~~~~~~~pet~~ 481 (513)
.+...+..||+..
T Consensus 162 ~~~~~~~~~~~~~ 174 (399)
T TIGR00893 162 GVLWLKFIPDPPQ 174 (399)
T ss_pred HHHhhheecCCCC
Confidence 6666666676544
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.7e-09 Score=103.88 Aligned_cols=136 Identities=21% Similarity=0.211 Sum_probs=106.1
Q ss_pred HHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHH-HHHhcCcHHHHHHHHHHhhhhc
Q 010317 56 LYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGAL-AMGLAPNYPFLIVGRMIAGIGV 134 (513)
Q Consensus 56 ~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~-~~~~~~~~~~l~~~R~l~G~~~ 134 (513)
+++.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+.++.++..+... .....++.+.+.+..++.|+..
T Consensus 263 ~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (405)
T TIGR00891 263 TYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLV 342 (405)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 356778899999999999999999999999999999999999999888776643332 3344566677777778888777
Q ss_pred ccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcc-hHHHHHh
Q 010317 135 GYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNIN-WRIMLGL 194 (513)
Q Consensus 135 g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-Wr~~~~~ 194 (513)
+...+..+.++.|..|+++|+++.++.+....+|..+++.+...+.. ..| |+..+..
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~---~~g~~~~~~~~ 400 (405)
T TIGR00891 343 QGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ---RLDEYGTALAS 400 (405)
T ss_pred ccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH---hccccchhHHh
Confidence 77777778889999999999999999888778887777766544432 334 6655443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.9e-09 Score=102.72 Aligned_cols=145 Identities=14% Similarity=0.142 Sum_probs=110.7
Q ss_pred hHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhc
Q 010317 55 VLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGV 134 (513)
Q Consensus 55 ~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~ 134 (513)
.|...++.|.++++.++..+...++..+++++.|+++||+|||+++..+..+..++..... . ........++.|++.
T Consensus 223 lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~ 299 (381)
T PRK03633 223 MPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAG 299 (381)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHH
Confidence 4555566789988999999999999999999999999999999999888888777655433 2 234455778888877
Q ss_pred ccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHH
Q 010317 135 GYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVG 205 (513)
Q Consensus 135 g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~ 205 (513)
+...+....++.|..|+++++...+.....+.+|..+++.+...+. ++.+|++.|.+.+...++..+.
T Consensus 300 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~---~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 300 FTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLM---QNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCccHHHHHHHHHHHHHHHH
Confidence 7777777777889998888777777766778888888887655443 2457899888877766655443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.5e-09 Score=103.01 Aligned_cols=146 Identities=12% Similarity=0.038 Sum_probs=111.2
Q ss_pred HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhccc
Q 010317 57 YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGY 136 (513)
Q Consensus 57 ~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~ 136 (513)
++++.+|++..+.++..+.+.++..+|.++.|+++||+|||+.+.....+..+...+....++...+.+..++.|++.+.
T Consensus 231 ~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 310 (394)
T PRK03699 231 YAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSA 310 (394)
T ss_pred HHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 56678899999999999999999999999999999999999999988887777766666778877777788888988877
Q ss_pred ccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHH
Q 010317 137 SLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGV 206 (513)
Q Consensus 137 ~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~ 206 (513)
..+....+..|..|. .++...+.......+|..+++.+...+. +..||+..++..++..++..+..
T Consensus 311 ~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~---~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 311 IYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIV---AHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred HHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHH---HHhCchhhhhhhHHHHHHHHHHH
Confidence 777666677776664 4566666666666677777766544333 24578888887776655554433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=7e-08 Score=99.10 Aligned_cols=159 Identities=10% Similarity=0.054 Sum_probs=93.6
Q ss_pred chhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCc
Q 010317 305 NDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTP 384 (513)
Q Consensus 305 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (513)
.+....+.|.+.++.+.+...... ......++..++.++.+++.||+|||+.+..+.+...+..++.+.. ..
T Consensus 52 ~~~~~~~~~~l~~~~gls~~~~g~-~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-------~s 123 (476)
T PLN00028 52 TFAAAPLLPIIRDNLNLTKSDIGN-AGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV-------SS 123 (476)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh-------cC
Confidence 344555667777776654433222 3344556677888999999999999998877665554444333321 11
Q ss_pred hhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH---------hcccc
Q 010317 385 TVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISH---------RLSFG 455 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 455 (513)
........+.. ++......+ ...+.+|.+|++.|+.+.|+.+..+++++.+.....+.+.. ..++.
T Consensus 124 ~~~l~~~r~l~----G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr 198 (476)
T PLN00028 124 ATGFIAVRFFI----GFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWR 198 (476)
T ss_pred HHHHHHHHHHH----HHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhH
Confidence 11111111111 111111111 23357899999999999999988888766655444433221 13577
Q ss_pred hhHHHHHHHHHHHHHhhheec
Q 010317 456 GTFFLLAGITTVGTIFFYVFL 476 (513)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~ 476 (513)
+.|++.+++.++..+...++.
T Consensus 199 ~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 199 IAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 788888887776665554443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-08 Score=102.20 Aligned_cols=157 Identities=14% Similarity=0.111 Sum_probs=123.1
Q ss_pred hhHHH-HhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 010317 54 AVLYI-KEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGI 132 (513)
Q Consensus 54 ~~~~~-~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~ 132 (513)
..|.+ ++.+|.++.+.+++.+...++..+|.++.+++.||.++++.+..+.++..++.++.++.++.....++.++.|+
T Consensus 245 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (417)
T PRK10489 245 LYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGY 324 (417)
T ss_pred hhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 34544 44489999999999999999999999999999999888888888888888888888888888888888999999
Q ss_pred hcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHH-HHHHhccCC
Q 010317 133 GVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVI-GVGVLIMPE 211 (513)
Q Consensus 133 ~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~-~~~~~~lpE 211 (513)
+.+...+....++.|..|++.||+..+++.....+|..+++.+...+. +..+++..++..++..++. .+....+||
T Consensus 325 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (417)
T PRK10489 325 LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLG---AMMTPVASASASGFGLLIIGVLLLLVLGE 401 (417)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHH---HHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence 888776666788899999999999999998888888888777655443 2346777776665554443 334445565
Q ss_pred Cc
Q 010317 212 SP 213 (513)
Q Consensus 212 sp 213 (513)
.+
T Consensus 402 ~~ 403 (417)
T PRK10489 402 LR 403 (417)
T ss_pred cc
Confidence 54
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-08 Score=100.97 Aligned_cols=142 Identities=15% Similarity=0.059 Sum_probs=116.8
Q ss_pred HHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcc
Q 010317 56 LYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVG 135 (513)
Q Consensus 56 ~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g 135 (513)
|...+|.|.++.+.+...+...++..++.++.+++.||+|+|+.+.++.++..+.....+++++.+.+++.+++.|+..|
T Consensus 229 ~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~ 308 (382)
T TIGR00902 229 AIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFA 308 (382)
T ss_pred HHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence 33335699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeeccCCCcccccccchhh-HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHH
Q 010317 136 YSLMISPVYTAEISPTMKRGFLTSLPE-VFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVI 202 (513)
Q Consensus 136 ~~~~~~~~~~~e~~p~~~R~~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~ 202 (513)
...+....|+.+. |+++|+...++++ ....+|..+++.++..+.+ ..+++ .|++.++.+++.
T Consensus 309 ~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~---~~g~~-~~~~~~~~~~~~ 371 (382)
T TIGR00902 309 VCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP---TLGAG-TFVFMAIIAAAA 371 (382)
T ss_pred HHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccHH-HHHHHHHHHHHH
Confidence 9999988899988 9999998888875 4567788877777665542 34653 344444444433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-08 Score=99.63 Aligned_cols=148 Identities=15% Similarity=0.103 Sum_probs=111.3
Q ss_pred hhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhh
Q 010317 54 AVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIG 133 (513)
Q Consensus 54 ~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~ 133 (513)
..|++++..|.+..+.++..+.+.++..+|.++.|+++||+|||.......+..........+.++...++++.++.|++
T Consensus 228 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~ 307 (390)
T PRK03545 228 IEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIA 307 (390)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 34566777899999999999999999999999999999999998755444333333333345567788888889999998
Q ss_pred cccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHH
Q 010317 134 VGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVG 205 (513)
Q Consensus 134 ~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~ 205 (513)
.+...+....++.|..| +.|+++++.+.....+|..+++++...+. +..++|..|++.+...++..+.
T Consensus 308 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~---~~~g~~~~~~~~~~~~~~~~~~ 375 (390)
T PRK03545 308 IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVS---LHLGLSSIGYVGAALALAALVW 375 (390)
T ss_pred HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccChhHHHHHHHHHHHHHHHH
Confidence 77665656667778766 58899999888888888888877765544 4568999988877666554443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.8e-07 Score=91.65 Aligned_cols=167 Identities=22% Similarity=0.287 Sum_probs=108.4
Q ss_pred HHHHHHhhcccccchhhHHHHhhhCCCchh-HHHHHHH----HHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHH
Q 010317 39 INSILLGYDIGVMSGAVLYIKEDLEITEVQ-VEVLVGI----LNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALA 113 (513)
Q Consensus 39 ~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~-~~~~~s~----~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~ 113 (513)
+-.+..++....+.+..+...+.++.+..+ .+..... ..+...+.+...|-++||+|||..+...+....+....
T Consensus 29 l~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~ 108 (463)
T KOG2816|consen 29 LYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALC 108 (463)
T ss_pred HHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHH
Confidence 333444444455555555555555433222 2222222 24666788889999999999999999999998888777
Q ss_pred HHhcCcHHHHHHHHHHhhhhcc--cccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Q 010317 114 MGLAPNYPFLIVGRMIAGIGVG--YSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIM 191 (513)
Q Consensus 114 ~~~~~~~~~l~~~R~l~G~~~g--~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~ 191 (513)
..+.. ++.++ +.|+..+ .......+|++|....++|....++....+..+..+++.++..... ..+--..
T Consensus 109 ~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~---~~~~a~~ 180 (463)
T KOG2816|consen 109 LLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK---FLGIALV 180 (463)
T ss_pred HHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---hcCchHH
Confidence 76666 33333 4444433 3445566889999999999999999888888887777777654432 1233445
Q ss_pred HHhhhHHHHHHHH-HHhccCCCc
Q 010317 192 LGLAAVPAAVIGV-GVLIMPESP 213 (513)
Q Consensus 192 ~~~~~~~~~i~~~-~~~~lpEsp 213 (513)
|.+..+..++..+ ..+++|||-
T Consensus 181 f~ia~~~~~~~~~y~~~~l~Esl 203 (463)
T KOG2816|consen 181 FLIAAASGILSLLYMLLFLPESL 203 (463)
T ss_pred HHHHHHHHHHHHHHHhhcccccc
Confidence 5565555554444 456789985
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.3e-08 Score=97.63 Aligned_cols=154 Identities=19% Similarity=0.233 Sum_probs=106.0
Q ss_pred hhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccC-----chHHHHHHHHHHHHHHHHHHhcC----cHHHHH
Q 010317 54 AVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIG-----RRYTIVVAAATFLVGALAMGLAP----NYPFLI 124 (513)
Q Consensus 54 ~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~G-----Rr~~~~~~~~~~~i~~~~~~~~~----~~~~l~ 124 (513)
..+++++++|+++++.....++..+.+.+ -++.|.++|-+. ||+-++++.++.+++....+..+ +.....
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~ 90 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAV 90 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHH
Confidence 44678999999999999988888777765 456779999874 55556667766666666555543 456666
Q ss_pred HHHHHhhhhcccccccccceeeccCCCc--ccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHH
Q 010317 125 VGRMIAGIGVGYSLMISPVYTAEISPTM--KRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVI 202 (513)
Q Consensus 125 ~~R~l~G~~~g~~~~~~~~~~~e~~p~~--~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~ 202 (513)
++-++..+|......++-+.+.|....+ .||...+.......+|.+++..++..+. ...++|+.|.+.++...+.
T Consensus 91 ~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~---~~~~~~~~f~i~~~~~~l~ 167 (433)
T PF03092_consen 91 VLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLL---DSFGPQGVFLISAALPLLM 167 (433)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh---hcCCCeEEehHHHHHHHHH
Confidence 6777788888888888888888876332 3666666666667778777766654332 3457788887766555444
Q ss_pred HH-HHhccCC
Q 010317 203 GV-GVLIMPE 211 (513)
Q Consensus 203 ~~-~~~~lpE 211 (513)
.+ ..++.+|
T Consensus 168 ~~~~~~~~~e 177 (433)
T PF03092_consen 168 LIVALFLLEE 177 (433)
T ss_pred HHHHHHhhhh
Confidence 44 3444555
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.6e-08 Score=97.45 Aligned_cols=179 Identities=15% Similarity=0.030 Sum_probs=106.1
Q ss_pred HHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHH
Q 010317 291 IAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLL 370 (513)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~ 370 (513)
+...++.++.+..-...+.+..|.+-++.+.+.... ........++..++.+..+++.||+|||+.+..+.+...+..+
T Consensus 10 ~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~-g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~ 88 (412)
T TIGR02332 10 IIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMF-GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAST 88 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHH-HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 333344444444444455556665556655444332 2244455667778888999999999999998776655444444
Q ss_pred HHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010317 371 LLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISH 450 (513)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 450 (513)
+.+.. ++.......-... +....+..+....+.+|.+|++.|+++.|+.+....++..+.+.....+.+
T Consensus 89 ~~~~~-------~~~~~l~~~r~l~----G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 157 (412)
T TIGR02332 89 ATMFA-------TGPESLYLLRILV----GIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA 157 (412)
T ss_pred HHHHh-------cCHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43321 1111111111111 111112223445678999999999999999988777655554444333332
Q ss_pred ------hcccchhHHHHHHHHHHHHHhhheecccCCC
Q 010317 451 ------RLSFGGTFFLLAGITTVGTIFFYVFLPETKG 481 (513)
Q Consensus 451 ------~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 481 (513)
..++++.|++.+...++..+..++++||+..
T Consensus 158 ~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 158 LDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 2467788888777776666666677888764
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.2e-08 Score=97.04 Aligned_cols=175 Identities=12% Similarity=0.118 Sum_probs=106.6
Q ss_pred HHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHH
Q 010317 296 INFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIG 375 (513)
Q Consensus 296 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~ 375 (513)
...+.+..+.+......|.+.++.+.+.... ........++..++.++.|++.||+|||+.++.+.....+..+.....
T Consensus 10 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~ 88 (392)
T PRK10473 10 ALVLLYPAGIDMYLVGLPRIAADLNASEAQL-HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA 88 (392)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555666677888877765544322 223444556677788999999999999999887765544444333321
Q ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010317 376 SKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFG 455 (513)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (513)
.+........... +.......+..+.+.+|.+|++.|+++.++.+....++..+.+.....+.+..++.
T Consensus 89 -------~~~~~~~~~~~l~----g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~ 157 (392)
T PRK10473 89 -------ETSSLFLAGRFLQ----GIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQ 157 (392)
T ss_pred -------CcHHHHHHHHHHH----HhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChH
Confidence 1111111111111 11111112234567789999999999999998888776555544444444555667
Q ss_pred hhHHHHHHHHHHHHHhhheecccCCCC
Q 010317 456 GTFFLLAGITTVGTIFFYVFLPETKGK 482 (513)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~pet~~~ 482 (513)
+.+++.+.+.++..+...+.+||++.+
T Consensus 158 ~~~~~~~~~~~i~~~~~~~~~~~~~~~ 184 (392)
T PRK10473 158 SLFYTMAAMGILVLLLSLFILKETRPA 184 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 778887777777766666667876543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=101.58 Aligned_cols=164 Identities=13% Similarity=0.119 Sum_probs=103.6
Q ss_pred hhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCch
Q 010317 306 DAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPT 385 (513)
Q Consensus 306 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (513)
..+....|.+.++.+.+.... ..+.....++..++.++.+++.||+|||+.++.+.....++.++.+... +.
T Consensus 12 ~~~~~~~~~~~~~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-------~~ 83 (379)
T TIGR00881 12 KNFALAMPYLVEEIGLSKTDL-GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST-------SL 83 (379)
T ss_pred HhhhhhhHHHHHHhCCCHhHH-HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh-------hH
Confidence 344456676666656554333 2345556677888899999999999999999887766555554444321 11
Q ss_pred hHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHH-HHHHHHHhcccchhHHHHHHH
Q 010317 386 VVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISM-TFLSISHRLSFGGTFFLLAGI 464 (513)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 464 (513)
+.. .......+.......+....+.+|.+|++.|+.+.++.+....++..+.+. ......+..++...+++.+.+
T Consensus 84 ~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (379)
T TIGR00881 84 WVM----AALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGII 159 (379)
T ss_pred HHH----HHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 111 111112222222334556778899999999999999988887776666553 333344445666778877777
Q ss_pred HHHHHHhhheecccCCC
Q 010317 465 TTVGTIFFYVFLPETKG 481 (513)
Q Consensus 465 ~~~~~~~~~~~~pet~~ 481 (513)
.++..+...++.||++.
T Consensus 160 ~~~~~~~~~~~~~~~~~ 176 (379)
T TIGR00881 160 AIIVSLICFLLLRDSPQ 176 (379)
T ss_pred HHHHHHHHheeeCCCcc
Confidence 76666666677776543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.6e-08 Score=96.97 Aligned_cols=168 Identities=20% Similarity=0.138 Sum_probs=104.7
Q ss_pred ccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCC
Q 010317 303 SGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGS 382 (513)
Q Consensus 303 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (513)
.+........|.+.++.+.+.... ........++..++.++.+++.||+|||+.+..+......+.+..+..
T Consensus 19 ~~~~~~~~~~p~~~~~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~------- 90 (385)
T TIGR00710 19 LGIDMYLPAFPEIAADLSTPASIV-QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS------- 90 (385)
T ss_pred HHHHHhcccHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-------
Confidence 334444455677777666544332 234455667778888999999999999999887765555444443321
Q ss_pred CchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHH
Q 010317 383 TPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLA 462 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (513)
.+.+...... ...+.......+....+..|.+|++.|+++.|+.+....++..+.+.....+.+..++...+++.+
T Consensus 91 ~~~~~~~~~~----~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~ 166 (385)
T TIGR00710 91 NNIETLLVLR----FVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLS 166 (385)
T ss_pred ccHHHHHHHH----HHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 1111111111 111111111123345677899999999999999998888876666666555666667777788777
Q ss_pred HHHHHHHHhhheecccCCCC
Q 010317 463 GITTVGTIFFYVFLPETKGK 482 (513)
Q Consensus 463 ~~~~~~~~~~~~~~pet~~~ 482 (513)
++.++..+...+..||++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~ 186 (385)
T TIGR00710 167 LAGILLSALIFFILPETLPY 186 (385)
T ss_pred HHHHHHHHHHHHhCCCCCCC
Confidence 77776666666667776543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-08 Score=101.53 Aligned_cols=173 Identities=16% Similarity=0.105 Sum_probs=133.1
Q ss_pred HHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCch--HHHHHHHHHHHHHHH
Q 010317 35 LLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRR--YTIVVAAATFLVGAL 112 (513)
Q Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr--~~~~~~~~~~~i~~~ 112 (513)
.+....-..||++ ++.+.+..+..+++|++..+...+.-+..+..++|++++|++.||+|.| +++.++++++.+..+
T Consensus 286 fLia~~l~~dg~~-ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~ 364 (477)
T PF11700_consen 286 FLIAYFLYSDGVN-TIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPL 364 (477)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 3333333446654 4455555677889999999999988899999999999999999999999 999999999877766
Q ss_pred HHHh--------cCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCC
Q 010317 113 AMGL--------APNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPG 184 (513)
Q Consensus 113 ~~~~--------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 184 (513)
...+ .++-+.+.+.-++.|+..|+..+.+-.+.+|+.|+.+.+...|++....-....+|+++-..+....+
T Consensus 365 ~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg 444 (477)
T PF11700_consen 365 YGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG 444 (477)
T ss_pred HHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6655 67778888899999999999999999999999999999999999998887777888776544443332
Q ss_pred CcchHHHHHhhhHHHHHHHHHHhccC
Q 010317 185 NINWRIMLGLAAVPAAVIGVGVLIMP 210 (513)
Q Consensus 185 ~~~Wr~~~~~~~~~~~i~~~~~~~lp 210 (513)
+-|+.+....+..++..+..+.++
T Consensus 445 --~~r~g~~~l~~lf~~gl~ll~~v~ 468 (477)
T PF11700_consen 445 --SQRYGFLFLLVLFLIGLILLFFVD 468 (477)
T ss_pred --CchhHHHHHHHHHHHHHHHHhhcc
Confidence 246666555555554444444443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.3e-08 Score=97.26 Aligned_cols=176 Identities=19% Similarity=0.175 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHH
Q 010317 31 FICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVG 110 (513)
Q Consensus 31 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~ 110 (513)
..+.+...+...++|... ...-...+-++-|++..+..+.+....+-..+..+++.++.||+|||+.++.+..+..+.
T Consensus 271 ~~i~~~v~~~qq~sGi~a--i~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~ 348 (485)
T KOG0569|consen 271 LLIGIVVSFAQQFSGINA--IFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVA 348 (485)
T ss_pred HHHHHHHHHHHHhcCcce--eHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 334445556666666532 222233577788999999999999999999999999999999999999999999999888
Q ss_pred HHHHHhc---CcHH------HHHHHHHHhhhhcccc-cccccceeeccCCCcccccccchhhHHHHHHHHH-HHHHHHHh
Q 010317 111 ALAMGLA---PNYP------FLIVGRMIAGIGVGYS-LMISPVYTAEISPTMKRGFLTSLPEVFIVLGILS-GYVFNYAL 179 (513)
Q Consensus 111 ~~~~~~~---~~~~------~l~~~R~l~G~~~g~~-~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~-~~~~~~~~ 179 (513)
.++.... ++.. ..+++.++..++.+.. -++...+.+|++|.+.|..+++.......++..+ +......-
T Consensus 349 ~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~ 428 (485)
T KOG0569|consen 349 LLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQ 428 (485)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766543 2211 1234444444444433 2445567899999999999888877665544333 22222221
Q ss_pred cCCCCCcchHHHHHhhhHHHHHHHH-HHhccCCCc
Q 010317 180 SGLPGNINWRIMLGLAAVPAAVIGV-GVLIMPESP 213 (513)
Q Consensus 180 ~~~~~~~~Wr~~~~~~~~~~~i~~~-~~~~lpEsp 213 (513)
. ..|= +.|++..++.++..+ .++.+|||+
T Consensus 429 ~----~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 429 N----VIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred H----Hhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 1 1222 667777777766555 467899996
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-07 Score=95.56 Aligned_cols=168 Identities=11% Similarity=0.142 Sum_probs=99.6
Q ss_pred hhhccchhhhccHHHHHHh-CCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhc
Q 010317 300 MQASGNDAVIYYTPAVFKG-AGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKI 378 (513)
Q Consensus 300 ~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 378 (513)
+...+.+....+.|.++++ .+.+...... ......+...++.+..|++.||+|||+.++.+.....++.++++...
T Consensus 18 ~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~-~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~-- 94 (395)
T PRK10054 18 LLTIGRGATLPFMTIYLSRQYSLSVDLIGY-AMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN-- 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh--
Confidence 3344455556667766654 4544333222 33344566778889999999999999988876655444433333211
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhH
Q 010317 379 LEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTF 458 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (513)
..+...... ........ ...+....+.+|.+|++.|+++.|+.+...+++..+.+.....+.+ .++...|
T Consensus 95 -----~~~~~~~~~---~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f 164 (395)
T PRK10054 95 -----NVTLVVLFF---ALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPF 164 (395)
T ss_pred -----HHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHH
Confidence 111111111 11111111 1223445677899999999999999999999876666555544443 5677788
Q ss_pred HHHHHHHHHHHHhhheecccCC
Q 010317 459 FLLAGITTVGTIFFYVFLPETK 480 (513)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~pet~ 480 (513)
++.+++.++..+...+..||++
T Consensus 165 ~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 165 WLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 8777776666555555556554
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.4e-08 Score=103.58 Aligned_cols=136 Identities=22% Similarity=0.241 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHhhhhcccccccccceeeccCC
Q 010317 73 VGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNY--PFLIVGRMIAGIGVGYSLMISPVYTAEISP 150 (513)
Q Consensus 73 ~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p 150 (513)
..+..+...++.++.++++||+|||+.+.++.++.+++.++..+.++. ...++.-++.+++.+........+.+|.+|
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 334456677889999999999999999999999998888887777654 444555566667777667777889999999
Q ss_pred CcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHhccCCCc
Q 010317 151 TMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIMPESP 213 (513)
Q Consensus 151 ~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~~lpEsp 213 (513)
++.|+.+.++.+....+|.++++.+.. +. ..++...+++.++..++..+..+++||+.
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVY-LG----EKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHH-HH----HHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 999999999988888888888876654 22 23456667777766666666677889985
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.7e-08 Score=101.69 Aligned_cols=169 Identities=17% Similarity=0.164 Sum_probs=107.3
Q ss_pred hhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccC
Q 010317 301 QASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILE 380 (513)
Q Consensus 301 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (513)
............|.+.++.+.+..... .......++..++.++.+++.||+|||+.++.+.....++.++.+.
T Consensus 14 ~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~------ 86 (485)
T TIGR00711 14 AVLDSTIVNVAIPTIAGDLGSSLSQVQ-WVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGV------ 86 (485)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhh-HHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhC------
Confidence 333344455667888877765543332 2445566777888899999999999999988776555444443331
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHH
Q 010317 381 GSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFL 460 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (513)
.++..... ......++......+....+..|.+|++.|+.+.++......++..+.+.....+.+..++.+.|++
T Consensus 87 -~~~~~~l~----~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~ 161 (485)
T TIGR00711 87 -APNLELMI----IFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI 161 (485)
T ss_pred -cCCHHHHH----HHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhh
Confidence 11111111 1111122222222345567889999999999999998888777666665555556666777888888
Q ss_pred HHHHHHHHHHhhheecccCCC
Q 010317 461 LAGITTVGTIFFYVFLPETKG 481 (513)
Q Consensus 461 ~~~~~~~~~~~~~~~~pet~~ 481 (513)
.+.+.++..+...+..||++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 162 NVPIGIIVVVVAFFILPRDKP 182 (485)
T ss_pred hhHHHHHHHHHHHHHcCCccc
Confidence 777766666665566676544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.8e-08 Score=98.27 Aligned_cols=164 Identities=12% Similarity=0.096 Sum_probs=94.9
Q ss_pred hhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhH
Q 010317 308 VIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVV 387 (513)
Q Consensus 308 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (513)
+.+..|.+.+ .+.+.... ........++..++.++.+++.||+|||+.+..+.+...++.+..+... .......
T Consensus 46 ~~~~~p~~~~-~g~s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 119 (438)
T TIGR00712 46 FALAMPYLVE-QGFSKGEL-GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVP----WATSSIA 119 (438)
T ss_pred HHhhhHHHHH-cCCCHhHh-HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccc----cccchHH
Confidence 3445565443 44443332 2244456677888899999999999999988776555444443332211 0011111
Q ss_pred HHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHH
Q 010317 388 VVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSIS-HRLSFGGTFFLLAGITT 466 (513)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 466 (513)
.... . .+..+++.....+....+..|.+|++.|+++.|+.+....+++.+.+....... ...+++..|++.+++.+
T Consensus 120 ~l~~--~-~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~ 196 (438)
T TIGR00712 120 IMFV--L-LFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAI 196 (438)
T ss_pred HHHH--H-HHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 1111 1 111111111111223345678999999999999988888876666555443322 23467778888888777
Q ss_pred HHHHhhheecccCC
Q 010317 467 VGTIFFYVFLPETK 480 (513)
Q Consensus 467 ~~~~~~~~~~pet~ 480 (513)
+..+..++++||+.
T Consensus 197 i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 197 IVALFAFAMMRDTP 210 (438)
T ss_pred HHHHHHHHhccCCH
Confidence 76666666677753
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3e-08 Score=95.03 Aligned_cols=182 Identities=10% Similarity=0.099 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHH
Q 010317 286 VRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGM 365 (513)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~ 365 (513)
+|...+...++.+......-..+..-.|.+.++.+.+. .....+..+..+...++-++.|.++||.+.|..+-.+.+..
T Consensus 26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk-~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils 104 (448)
T COG2271 26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSK-TQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence 44444444444333333333334445566666655443 33444667788899999999999999999999998888888
Q ss_pred HHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHH
Q 010317 366 VGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTF 445 (513)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~ 445 (513)
.++.++++... +...... .....+.|...-+|.+.-..+.-||++-||+..++=|...|+++++.+.+.
T Consensus 105 ai~nil~Gfs~--------s~~~~~~---l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~ 173 (448)
T COG2271 105 AIVNILFGFSP--------SLFLFAV---LWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVA 173 (448)
T ss_pred HHHHHHHhhhh--------HHHHHHH---HHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence 88887777532 2222222 223333443222344455667788999999999999999999988887776
Q ss_pred --HHHHHhcccchhHHHHHHHHHHHHHhhheecccC
Q 010317 446 --LSISHRLSFGGTFFLLAGITTVGTIFFYVFLPET 479 (513)
Q Consensus 446 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 479 (513)
.....+.++...|+.-++++++.+++.++.+++|
T Consensus 174 ~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 174 LLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5666666888899999999988888877776543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.4e-08 Score=96.41 Aligned_cols=149 Identities=11% Similarity=0.060 Sum_probs=106.8
Q ss_pred hhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHH-HHHHHHHHHHHHHH-----hcCcHHHHHHH
Q 010317 53 GAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIV-VAAATFLVGALAMG-----LAPNYPFLIVG 126 (513)
Q Consensus 53 ~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~-~~~~~~~i~~~~~~-----~~~~~~~l~~~ 126 (513)
...|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+. .+.+...++..... ..++...+.++
T Consensus 243 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~ 322 (402)
T TIGR00897 243 VFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALII 322 (402)
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHH
Confidence 3456666778999999999889999999999999999999999988764 33333333333222 13466777788
Q ss_pred HHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHH
Q 010317 127 RMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGV 206 (513)
Q Consensus 127 R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~ 206 (513)
.++.|++.+...+. ...+.|..| ++|++..++.+....+|..+++.+...+. +..||+..+++.++..++..+..
T Consensus 323 ~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~---~~~g~~~~~~~~a~~~~i~~~~~ 397 (402)
T TIGR00897 323 AIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFI---GFFGAIGVVWIFAALYVVSAFLT 397 (402)
T ss_pred HHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcchHHHHHHHHHHHHHHHHHH
Confidence 88889887765443 345567655 68999999999888888888776654443 24589998888777665554443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-07 Score=95.82 Aligned_cols=106 Identities=20% Similarity=0.161 Sum_probs=77.0
Q ss_pred HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHH-H---HhcCcHHHHHHHHHHhhh
Q 010317 57 YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALA-M---GLAPNYPFLIVGRMIAGI 132 (513)
Q Consensus 57 ~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~-~---~~~~~~~~l~~~R~l~G~ 132 (513)
++++..|.+..+.++....+.++..++.++.|+++||+|||+.+..+..+..+.... . ...++...+.+..++.|+
T Consensus 264 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (434)
T PRK15075 264 FGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSF 343 (434)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 456668999888888888888999999999999999999999988765544332221 1 123444444444555666
Q ss_pred hcccccccccceeeccCCCcccccccchhh
Q 010317 133 GVGYSLMISPVYTAEISPTMKRGFLTSLPE 162 (513)
Q Consensus 133 ~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~ 162 (513)
+.+...+....+..|..|++.|+...++..
T Consensus 344 ~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~ 373 (434)
T PRK15075 344 LYGSYNGAMVVALTEVMPAEVRTAGFSLAY 373 (434)
T ss_pred HHHHHHhhHHHHHHHHCCCCccchheeHHH
Confidence 666555555577899999999999988743
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.5e-07 Score=86.11 Aligned_cols=176 Identities=13% Similarity=0.137 Sum_probs=126.8
Q ss_pred HHHHHHHhhcccccchhhHHHHhh-hCCCchhHH-HHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHH
Q 010317 38 SINSILLGYDIGVMSGAVLYIKED-LEITEVQVE-VLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMG 115 (513)
Q Consensus 38 ~~~~~~~g~~~~~~~~~~~~~~~~-~~~s~~~~~-~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~ 115 (513)
++-.++.-+.. .-....|++.+. -|+|++|+. -+.-+..-.+....++...++|..|-|++++...+...+...+.-
T Consensus 11 c~~gf~~~frP-sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll 89 (412)
T PF01770_consen 11 CLFGFFKEFRP-SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLL 89 (412)
T ss_pred HHHHHHHhcCC-CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 33344444433 233445676664 899988864 466667777888999999999999999999999999999999999
Q ss_pred hcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhh
Q 010317 116 LAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLA 195 (513)
Q Consensus 116 ~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~ 195 (513)
+.++...+-+.-++.|++.+... ....|+--..|+++--++++.......+|..++.+++-.+... ...+.+.+.++.
T Consensus 90 ~~~sv~~mq~~q~~yg~~~a~ev-ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~-~~~sy~~L~~is 167 (412)
T PF01770_consen 90 FGTSVLAMQLMQFFYGLATAAEV-AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF-GGVSYFQLNYIS 167 (412)
T ss_pred HHCcHHHHHHHHHHHHHHHHHHH-HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHH
Confidence 99999999999999999988754 4456666667777767777776677777777776666554322 233566666665
Q ss_pred hHHHHHHHHHHhccCCCchhH
Q 010317 196 AVPAAVIGVGVLIMPESPRWL 216 (513)
Q Consensus 196 ~~~~~i~~~~~~~lpEsp~~l 216 (513)
.....+..+..+++|..++-.
T Consensus 168 l~~~~~a~~~~~fLP~~~~S~ 188 (412)
T PF01770_consen 168 LASVSLALLIALFLPMPKRSL 188 (412)
T ss_pred HHHHHHHHHHHHHcCCCCccc
Confidence 555555555667788766533
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.1e-08 Score=97.91 Aligned_cols=149 Identities=16% Similarity=0.058 Sum_probs=88.8
Q ss_pred HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHH--h--cCcHHHHHHHHHHhhh
Q 010317 57 YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMG--L--APNYPFLIVGRMIAGI 132 (513)
Q Consensus 57 ~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~--~--~~~~~~l~~~R~l~G~ 132 (513)
++++++|.+..+.+...++..++..+++++.|+++||+|||+.+.+..++..+...... . ..+....+..-.+.++
T Consensus 269 ~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (432)
T PRK10406 269 YLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALL 348 (432)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 46677899988888888888888889999999999999999988777665443332221 1 2222222211122222
Q ss_pred hcccccccccceeeccCCCcccccccchhhHHHHH--HHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHhcc
Q 010317 133 GVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVL--GILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIM 209 (513)
Q Consensus 133 ~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~--G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~~l 209 (513)
..+........+.+|++|++.|+...++.+..... |.. .+.+...+.. ...|...+++.++..++..+..+++
T Consensus 349 ~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~-~p~~~~~l~~---~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 349 IVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGS-AEYVALSLKS---IGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhH-HHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 23333334557789999999999999986543222 322 3333333321 1135555555555555444444333
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.6e-07 Score=91.33 Aligned_cols=161 Identities=14% Similarity=0.081 Sum_probs=96.2
Q ss_pred hccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHH
Q 010317 309 IYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVV 388 (513)
Q Consensus 309 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (513)
.--+|.+-++.+.+...... ......++..++.++.++++||+|||++++.+.....++.+..+.. .+....
T Consensus 36 ~p~l~~i~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-------~~~~~l 107 (413)
T PRK15403 36 QPGIINVVRDFNADVSLAPA-SVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-------TSMTQF 107 (413)
T ss_pred ccCHHHHHHHhCCCHHHHHH-HHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-------CCHHHH
Confidence 33444554555544333322 2333456777888899999999999999887765444443333321 111111
Q ss_pred HHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 010317 389 VLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVG 468 (513)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (513)
...-+........ ..+..+.+..|.+|++.|+++.++.+....++..+.+..-..+.+..++.+.|++.+++.+++
T Consensus 108 ~~~r~l~Gi~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~ 183 (413)
T PRK15403 108 LIARFIQGTSICF----IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIA 183 (413)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 1111111111111 112345678899999999999998888877765555444444555567778888888877777
Q ss_pred HHhhheecccCCC
Q 010317 469 TIFFYVFLPETKG 481 (513)
Q Consensus 469 ~~~~~~~~pet~~ 481 (513)
.+...+.+||+++
T Consensus 184 ~~~~~~~lp~~~~ 196 (413)
T PRK15403 184 FVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHhCCCCcc
Confidence 6655566788754
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.1e-08 Score=90.75 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=81.3
Q ss_pred HHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHH----HHHHHHHHhhhhcccccccccceeeccCCCc
Q 010317 77 NVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYP----FLIVGRMIAGIGVGYSLMISPVYTAEISPTM 152 (513)
Q Consensus 77 ~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~----~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~ 152 (513)
.+.-..|.++.+++.||+|||+++..+.++++++.++...+++-. .++.+|++. .+.+.+.++|..|.+|++
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi----sg~fqvaYvYtPEVyPTa 466 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI----SGAFQVAYVYTPEVYPTA 466 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH----hchheEEEEecCcccchh
Confidence 455678999999999999999999999999999998888776544 344556554 444556779999999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHH
Q 010317 153 KRGFLTSLPEVFIVLGILSGYVFNYA 178 (513)
Q Consensus 153 ~R~~~~~~~~~~~~~G~~~~~~~~~~ 178 (513)
.|+...|..+...-+|.++.++++..
T Consensus 467 vRatgvGtcSsmaRIggI~~p~iA~~ 492 (528)
T KOG0253|consen 467 VRATGVGTCSSMARIGGIFSPVIAMR 492 (528)
T ss_pred hhhcchhhhhhHHhhhhhhhhHHHHH
Confidence 99999999888889999999988843
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=94.50 Aligned_cols=155 Identities=16% Similarity=0.175 Sum_probs=105.8
Q ss_pred hHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHhhhh
Q 010317 55 VLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAP-NYPFLIVGRMIAGIG 133 (513)
Q Consensus 55 ~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~R~l~G~~ 133 (513)
.|.+.++.|.+..+.+...+.+.++..+|.++.+++.||+|||+.+.++..+..++.......+ +...+. -++.|++
T Consensus 228 lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l~g~g 305 (393)
T PRK09705 228 LPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AMVCGLG 305 (393)
T ss_pred HHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HHHHHHh
Confidence 3433345899999999999999999999999999999999999999988877777665544333 222222 2456777
Q ss_pred cccccccccceeeccCC-CcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHH-HHhccCC
Q 010317 134 VGYSLMISPVYTAEISP-TMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGV-GVLIMPE 211 (513)
Q Consensus 134 ~g~~~~~~~~~~~e~~p-~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~-~~~~lpE 211 (513)
.+...+.......+..+ +++|++..++.+....++..+++.+...+.+..+ +|+..|++.++.+++... ...+.||
T Consensus 306 ~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 306 LGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG--NYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred ccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHHhccc
Confidence 77776666555566664 5678998888777666666666555433332111 477777776555444333 3556777
Q ss_pred Cc
Q 010317 212 SP 213 (513)
Q Consensus 212 sp 213 (513)
++
T Consensus 384 ~~ 385 (393)
T PRK09705 384 RF 385 (393)
T ss_pred cc
Confidence 75
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.9e-07 Score=94.66 Aligned_cols=172 Identities=13% Similarity=0.118 Sum_probs=105.8
Q ss_pred HHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHH
Q 010317 296 INFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIG 375 (513)
Q Consensus 296 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~ 375 (513)
...+.+....+.+..+.|.+.++.+.+...... ......++..++.++.+++.||+|||+.++.+......+.+..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~- 94 (471)
T PRK10504 17 FGFFMQSLDTTIVNTALPSMAQSLGESPLHMHM-VIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL- 94 (471)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-
Confidence 344445555556677889988877655433222 334445566778899999999999999988765544444333221
Q ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010317 376 SKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFG 455 (513)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (513)
. .+......... ..+.......+....+..|.+|++.|+++.|+.+...+++..+.+.....+.+..++.
T Consensus 95 ----~--~~~~~l~~~~~----l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~ 164 (471)
T PRK10504 95 ----S--GTLNELLLARV----LQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWH 164 (471)
T ss_pred ----h--CCHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHH
Confidence 1 11111111111 1112111222345667789999999999999998888876666666656666666777
Q ss_pred hhHHHHHHHHHHHHHhhheecccC
Q 010317 456 GTFFLLAGITTVGTIFFYVFLPET 479 (513)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~pet 479 (513)
+.|.+...+..+..+......|+.
T Consensus 165 ~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 165 WIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCc
Confidence 788877766666665555555654
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1e-07 Score=97.37 Aligned_cols=148 Identities=16% Similarity=0.156 Sum_probs=94.0
Q ss_pred hhH-HHHhhhCCCchhHHHHHHHHHHHHHHHHhhcccccccc--CchHHH-HHHHHHHHHHHHHHHh--cCcHHHHHHHH
Q 010317 54 AVL-YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYI--GRRYTI-VVAAATFLVGALAMGL--APNYPFLIVGR 127 (513)
Q Consensus 54 ~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~--GRr~~~-~~~~~~~~i~~~~~~~--~~~~~~l~~~R 127 (513)
..| +++++.|.+..+.++..+.+.++..++.++.|+++||+ |||... ...+.+..++.....+ ..+.....++.
T Consensus 275 ~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 354 (452)
T PRK11273 275 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACM 354 (452)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 344 46667889988999888889999999999999999999 555432 2222333333222222 33444455555
Q ss_pred HHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHH-HHHHHH-HHHhcCCCCCcchHHHHHhhhHHHHHHHHH
Q 010317 128 MIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGI-LSGYVF-NYALSGLPGNINWRIMLGLAAVPAAVIGVG 205 (513)
Q Consensus 128 ~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~-~~~~~~-~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~ 205 (513)
++.|.+..........+..|..|++.||+.+++.+....+|. +.++.+ +.... ..||++.|++.++.+++..+.
T Consensus 355 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~----~~g~~~~f~~~~~~~~~~~~~ 430 (452)
T PRK11273 355 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD----FFGWDGGFMVMIGGSILAVIL 430 (452)
T ss_pred HHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH----HhcchHHHHHHHHHHHHHHHH
Confidence 555654333222233456799999999999999876655553 334433 33332 457999988777655554443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.7e-07 Score=90.66 Aligned_cols=158 Identities=11% Similarity=0.086 Sum_probs=97.6
Q ss_pred cHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHH
Q 010317 311 YTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVL 390 (513)
Q Consensus 311 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (513)
..|.+.++.+.+...... ......+...++.++.+.+.||+|||+.++.+.+...++.+..+.. .+.+....
T Consensus 42 ~l~~~~~~~g~s~~~~g~-~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~ 113 (394)
T PRK10213 42 LLTPMAQDLGISEGVAGQ-SVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA-------NSFSLLLI 113 (394)
T ss_pred hHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-------ChHHHHHH
Confidence 456666666554433222 3334566777888999999999999999988776655544443321 11111111
Q ss_pred HHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Q 010317 391 CIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTI 470 (513)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (513)
.-.... .......+....+++|.+|++.|+.+.++.....+++..+.+.....+.+..++.+.|++.+.+.+++.+
T Consensus 114 ~r~l~G----~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 114 GRACLG----LALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred HHHHHH----HhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 111111 1111122344567789999999999999998887776656666656666666778888887776666555
Q ss_pred hhheecccCC
Q 010317 471 FFYVFLPETK 480 (513)
Q Consensus 471 ~~~~~~pet~ 480 (513)
......||++
T Consensus 190 ~~~~~~p~~~ 199 (394)
T PRK10213 190 WIIKSLPSLP 199 (394)
T ss_pred HHHHHCCCCC
Confidence 5444567653
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.3e-08 Score=92.14 Aligned_cols=177 Identities=14% Similarity=0.141 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHH
Q 010317 33 CALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGAL 112 (513)
Q Consensus 33 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~ 112 (513)
..++..-....||.+ ++.+....+-..++|++..+..++.-...+..++|.++.|++.||+|-|+++.++++++.+.++
T Consensus 255 ~~FLiA~~~~~DGv~-til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~ 333 (438)
T COG2270 255 VLFLIARFFYIDGVN-TILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAAL 333 (438)
T ss_pred HHHHHHHHHHHhhHH-HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHH
Confidence 334444445566664 3444444556679999999999999999999999999999999999999999999999999998
Q ss_pred HHHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Q 010317 113 AMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIML 192 (513)
Q Consensus 113 ~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 192 (513)
..-+...-..+.++-.+.|+..|+....+-.|.++..|+++-++..+++..+--.+...++.+-.......+ +-|.-+
T Consensus 334 ~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg--~~r~g~ 411 (438)
T COG2270 334 YLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG--SSRAGV 411 (438)
T ss_pred HHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc--chhhHH
Confidence 888877777777788899999999999999999999999999999999988877777777665444443333 246555
Q ss_pred HhhhHHHHHHHHHHhccCCC
Q 010317 193 GLAAVPAAVIGVGVLIMPES 212 (513)
Q Consensus 193 ~~~~~~~~i~~~~~~~lpEs 212 (513)
....+...+..+..+.+|+.
T Consensus 412 ~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 412 LSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHhhHhhEEeecCC
Confidence 55555444444555555544
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-07 Score=90.34 Aligned_cols=154 Identities=29% Similarity=0.458 Sum_probs=120.2
Q ss_pred hhcccccchhhHHHHhhhCCCc--hhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCc--H
Q 010317 45 GYDIGVMSGAVLYIKEDLEITE--VQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPN--Y 120 (513)
Q Consensus 45 g~~~~~~~~~~~~~~~~~~~s~--~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~--~ 120 (513)
+++........+....+.+.+. ...++..+.+.++..+++++.|.++||+|||+.+..+.....++.+..++..+ .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
T COG0477 15 GLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGL 94 (338)
T ss_pred HHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchH
Confidence 3555666667777777777666 47899999999999999999999999999998888888776666777777776 8
Q ss_pred HHHHHHHHHhhhhcccccccccceeeccCCC-cccccccchhhH-HHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHH
Q 010317 121 PFLIVGRMIAGIGVGYSLMISPVYTAEISPT-MKRGFLTSLPEV-FIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVP 198 (513)
Q Consensus 121 ~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~-~~R~~~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~ 198 (513)
..+++.|++.|++.+...+....++.|+.|. ++|+...+.... ....|..+++.++..+... ...+||+.|......
T Consensus 95 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 173 (338)
T COG0477 95 ALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALL 173 (338)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHH
Confidence 9999999999999998888889999999988 677877777666 4666766666554433322 456899966655544
Q ss_pred H
Q 010317 199 A 199 (513)
Q Consensus 199 ~ 199 (513)
.
T Consensus 174 ~ 174 (338)
T COG0477 174 G 174 (338)
T ss_pred H
Confidence 3
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.1e-06 Score=80.40 Aligned_cols=90 Identities=22% Similarity=0.289 Sum_probs=77.0
Q ss_pred HHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcccc
Q 010317 58 IKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYS 137 (513)
Q Consensus 58 ~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~ 137 (513)
+-++.|.+..|++.+...-+...++...+.|.++||+|||+.-++..++++++++ +-..+++..++++|++.|++....
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLL 138 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLL 138 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHH
Confidence 4467899999999999998999999999999999999999999999999999986 555689999999999999987776
Q ss_pred ccccc-ceeecc
Q 010317 138 LMISP-VYTAEI 148 (513)
Q Consensus 138 ~~~~~-~~~~e~ 148 (513)
...-- +++.|.
T Consensus 139 fS~FEsW~V~Eh 150 (354)
T PF05631_consen 139 FSAFESWMVHEH 150 (354)
T ss_pred HHHHHHHHHHHH
Confidence 55443 456665
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-07 Score=78.46 Aligned_cols=134 Identities=22% Similarity=0.257 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeee
Q 010317 335 GLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYS 414 (513)
Q Consensus 335 ~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (513)
.++..++.++.+++.||+|||+.+..+......+.+..... .+.+......... +.......+..+.+.
T Consensus 8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----g~~~~~~~~~~~~~~ 76 (141)
T TIGR00880 8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------SNITVLIIARFLQ----GFGAAFALVAGAALI 76 (141)
T ss_pred hhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHH----HHHHHHHHHhHHHHH
Confidence 34566778888999999999999877655544444333221 1111111111111 111111223456678
Q ss_pred cccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhheecccC
Q 010317 415 SEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPET 479 (513)
Q Consensus 415 ~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 479 (513)
.|.+|++.|+++.++.+...+++..+.+.....+.+..++...+++.+.+.+++.+..+++.||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999887777766666666656666777777777777766666666764
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.3e-07 Score=93.99 Aligned_cols=126 Identities=14% Similarity=0.004 Sum_probs=88.9
Q ss_pred hhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHhh
Q 010317 54 AVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPN--YPFLIVGRMIAG 131 (513)
Q Consensus 54 ~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~--~~~l~~~R~l~G 131 (513)
..|...++.|.++.+.+...+...++..++.++.|+++||+|||+.+..+.++..+........++ ...+.+.-+..+
T Consensus 253 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (426)
T PRK12307 253 LLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLM 332 (426)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 345555567888888898889999999999999999999999999998888777666554443332 222222222222
Q ss_pred hhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHh
Q 010317 132 IGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYAL 179 (513)
Q Consensus 132 ~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 179 (513)
.+..+.....+.++.|.+|++.||++.++......+|..+++.+...+
T Consensus 333 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 333 ATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred HhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence 222233344557789999999999999988777777777776665443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.5e-07 Score=83.76 Aligned_cols=155 Identities=21% Similarity=0.159 Sum_probs=108.1
Q ss_pred ccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhc-------CcHHH
Q 010317 50 VMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLA-------PNYPF 122 (513)
Q Consensus 50 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~-------~~~~~ 122 (513)
.++.--|.+++.+|+|.+|.+.+.+.-.+|..+| ++.|.+.|++|++.++.++.+...++-.....+ .+++.
T Consensus 20 ~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~ 98 (250)
T PF06813_consen 20 TFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWL 98 (250)
T ss_pred chhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHH
Confidence 3344457899999999999999999999999875 888999999999999999999998887655432 36778
Q ss_pred HHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHH
Q 010317 123 LIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVI 202 (513)
Q Consensus 123 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~ 202 (513)
+++..++.|.+.......+.....+.+| ++||.+.++.-.+..++..+-..+...+- ....-+.++.....|.++.
T Consensus 99 ~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f---~~~~~~fll~la~~~~~v~ 174 (250)
T PF06813_consen 99 MCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFF---GDDPSSFLLFLAVLPAVVC 174 (250)
T ss_pred HHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHc---CCChHHHHHHHHHHHHHHH
Confidence 8888888877766555555555567787 57999999987777666554333222221 1112344444444455544
Q ss_pred HHHHhcc
Q 010317 203 GVGVLIM 209 (513)
Q Consensus 203 ~~~~~~l 209 (513)
.+..+++
T Consensus 175 l~~~~~v 181 (250)
T PF06813_consen 175 LVAMFFV 181 (250)
T ss_pred HHHhhhe
Confidence 4444443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.7e-07 Score=90.57 Aligned_cols=165 Identities=20% Similarity=0.175 Sum_probs=96.9
Q ss_pred chhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCc
Q 010317 305 NDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTP 384 (513)
Q Consensus 305 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (513)
...+....|.+.++.+.+...... ......++..++.++.+.+.||+|||+.++.+.....++.+..... +.
T Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------~~ 100 (406)
T PRK15402 29 NDMIQPGMLAVVEDFNAGAEWVPT-SMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA-------QS 100 (406)
T ss_pred hhhHhcchHHHHHHhCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-------cc
Confidence 343444556666666544332222 3344556777888899999999999999887765544443333221 11
Q ss_pred hhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Q 010317 385 TVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGI 464 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (513)
.+........ .+.......+..+.+..|.+|++.|..+.++......++..+.+.....+.+..++.+.+++.+++
T Consensus 101 ~~~l~~~~~l----~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~ 176 (406)
T PRK15402 101 IEQFTLLRFL----QGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAAL 176 (406)
T ss_pred HHHHHHHHHH----HHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHH
Confidence 1111111111 111111112344566789999999999888877766654444444444455556777888888877
Q ss_pred HHHHHHhhheecccCCC
Q 010317 465 TTVGTIFFYVFLPETKG 481 (513)
Q Consensus 465 ~~~~~~~~~~~~pet~~ 481 (513)
.+++.+..++..||+++
T Consensus 177 ~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 177 AALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHHHhCCCCCc
Confidence 77766655566787754
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.5e-05 Score=73.83 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=88.4
Q ss_pred HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccC-----chHHHHHHHHHH-HHHHHHHHh-----cC-------
Q 010317 57 YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIG-----RRYTIVVAAATF-LVGALAMGL-----AP------- 118 (513)
Q Consensus 57 ~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~G-----Rr~~~~~~~~~~-~i~~~~~~~-----~~------- 118 (513)
.+..|++++..-.+...++.++-. .....+|..||+.+ ||.-+++.-.+. ..+..+..+ +.
T Consensus 5 VMIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~ 83 (403)
T PF03209_consen 5 VMIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG 83 (403)
T ss_pred hHHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 356788988888888777765544 46889999999999 887776654443 333332222 22
Q ss_pred cH----HHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHH
Q 010317 119 NY----PFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNY 177 (513)
Q Consensus 119 ~~----~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~ 177 (513)
+. ....++-.+.|+|.+.......+..+|..|+++|+++.++......+|.+++.+...
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g 146 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFG 146 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 12 235566777888888888888899999999999999999999888899888876643
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-07 Score=108.30 Aligned_cols=142 Identities=19% Similarity=0.173 Sum_probs=117.2
Q ss_pred HHHHhhhCCCch-hHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhc
Q 010317 56 LYIKEDLEITEV-QVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGV 134 (513)
Q Consensus 56 ~~~~~~~~~s~~-~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~ 134 (513)
+++++.+|.+.. +.+++.+...++..+|++++++++||+++|+.+.++.++.+++.++.++..+...++++-++.|++.
T Consensus 257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 336 (1146)
T PRK08633 257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSA 336 (1146)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 356778999998 9999999999999999999999999999999999998888888888888888888888999999999
Q ss_pred ccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHH
Q 010317 135 GYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPA 199 (513)
Q Consensus 135 g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~ 199 (513)
+...+....++.|..|++.||+++++.+....+|..++..++..+.. ...++...+++.++..
T Consensus 337 ~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~ 399 (1146)
T PRK08633 337 GLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG--LGLSPAGLFYLIALVT 399 (1146)
T ss_pred HHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH--hccCHHHHHHHHHHHH
Confidence 98888888899999999999999999888888887666665544432 1235665665544443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.3e-07 Score=92.64 Aligned_cols=138 Identities=16% Similarity=0.030 Sum_probs=105.7
Q ss_pred HHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcccc
Q 010317 58 IKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYS 137 (513)
Q Consensus 58 ~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~ 137 (513)
..+|.|.++.+.+...+...++..++.++.+++.||+|+|+.+..+.+...+.....++.++.+.+++..++.|++.+..
T Consensus 231 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 310 (382)
T PRK11128 231 YWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVC 310 (382)
T ss_pred HHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 33568999989999999888899999999999999999999999999998888888888899999999999999998887
Q ss_pred cccccceeeccCCCcccccccchhh-HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHH
Q 010317 138 LMISPVYTAEISPTMKRGFLTSLPE-VFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAA 200 (513)
Q Consensus 138 ~~~~~~~~~e~~p~~~R~~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~ 200 (513)
.+....+..+. +++++++..+... .....|..+++.++..+. +..++. .++..++..+
T Consensus 311 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~---~~~g~~-~~~~~~~~~~ 369 (382)
T PRK11128 311 HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLY---QHLGAG-VFWVMALVAL 369 (382)
T ss_pred HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccHH-HHHHHHHHHH
Confidence 77777777776 5556677777665 334566666666655443 233553 3444444333
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.4e-08 Score=94.77 Aligned_cols=125 Identities=17% Similarity=0.209 Sum_probs=108.1
Q ss_pred hhhHHHHhh-hCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHh
Q 010317 53 GAVLYIKED-LEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPN-YPFLIVGRMIA 130 (513)
Q Consensus 53 ~~~~~~~~~-~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~-~~~l~~~R~l~ 130 (513)
...|.+.++ +|.++.+.++..+...++..++.++.+++.||+|||+.+..+..+.+++.....+.++ .+.+.+..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI 311 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 344655554 8999999999999999999999999999999999999999888888888777777774 88888899999
Q ss_pred hhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHH
Q 010317 131 GIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNY 177 (513)
Q Consensus 131 G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~ 177 (513)
|++.+...+....++.|..|+++|++..++.+....+|..+++.+..
T Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g 358 (365)
T TIGR00900 312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAG 358 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888889999999999999999998888888877766643
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3e-07 Score=91.48 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=100.4
Q ss_pred hccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHH
Q 010317 309 IYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVV 388 (513)
Q Consensus 309 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (513)
....|.+.++.+.+.... .....+..++..++.++.+++.||+|||+.+..+.+...++.+++... .+.+..
T Consensus 11 ~p~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~ 82 (377)
T PRK11102 11 LPALPVIAADFGVSAGSV-QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-------QTIDQL 82 (377)
T ss_pred hccHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-------ccHHHH
Confidence 345566666655443322 223445666778888999999999999999888766555554444321 111111
Q ss_pred HHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 010317 389 VLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVG 468 (513)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (513)
...... .+++.....+....+.+|.+|++.|+++.++......++..+.+.....+.+..++.+.+++.+.+.++.
T Consensus 83 ~~~~~l----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 158 (377)
T PRK11102 83 IYMRFL----HGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILA 158 (377)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 111111 1111111223345678899999999999999988888766666655555666667777888777777776
Q ss_pred HHhhheecccCC
Q 010317 469 TIFFYVFLPETK 480 (513)
Q Consensus 469 ~~~~~~~~pet~ 480 (513)
.+...+.+||++
T Consensus 159 ~~~~~~~~~~~~ 170 (377)
T PRK11102 159 AALVFFFIPETL 170 (377)
T ss_pred HHHHHHhCCccC
Confidence 666666677764
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.9e-07 Score=87.69 Aligned_cols=153 Identities=14% Similarity=0.127 Sum_probs=121.9
Q ss_pred cccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHH
Q 010317 49 GVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGL-APNYPFLIVGR 127 (513)
Q Consensus 49 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~R 127 (513)
..+++.-|.+++..|++.+..++..-.|-++..+|+++.|+++|| +.|+.+.....+..+......+ .++....++.-
T Consensus 229 ~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~ 307 (394)
T COG2814 229 ALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALL 307 (394)
T ss_pred hhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 445667789999999999999999999999999999999999999 9999999998888777766555 45556667777
Q ss_pred HHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHH
Q 010317 128 MIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGV 206 (513)
Q Consensus 128 ~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~ 206 (513)
++.|+..+.....-....++ ..++.+...++++...+++|..+|..++..+. ++.|+....++.++..++.....
T Consensus 308 ~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~---~~~g~~~~~~~~a~l~~~a~~~~ 382 (394)
T COG2814 308 FLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVL---DALGYAATGWVGAALLLLALLLA 382 (394)
T ss_pred HHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhchHHHHHHHHHHHHHHHHHH
Confidence 77888777766655566666 44678899999999999999998888766554 24689999988888776655543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=6e-07 Score=91.07 Aligned_cols=162 Identities=14% Similarity=0.061 Sum_probs=99.3
Q ss_pred HhhhccchhhhccHHHHHHhC-CCCCchhHHHHHHHHhHHHHHHHHHHHHHhhcc-CChhHHHhhhHHHHHHHHHHHHHh
Q 010317 299 FMQASGNDAVIYYTPAVFKGA-GIHRKPVLFGINVVMGLAKTFFVVLSALHLDKF-GRRPLLLLGSSGMVGSLLLLGIGS 376 (513)
Q Consensus 299 ~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-grr~~~~~~~~~~~~~~~~~~~~~ 376 (513)
.+...+++++..++|.++.+. +.+..... ...........++.+++|++.||+ |||+.++.+.+.+....++++..
T Consensus 19 ~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~-~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~- 96 (493)
T PRK15462 19 IWEYFSFYGMRALLILYLTNQLKYDDNHAY-ELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS- 96 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh-
Confidence 334445677777888887643 44333322 233444456677888999999999 99999887766555444333211
Q ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChh--hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010317 377 KILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLR--LRAQGSALAISVNRLVSGVISMTFLSISHRLSF 454 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~--~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (513)
...... ....+... . .......+....+.+|+||++ .|.++.++....+|+++++.+...+.+.+..++
T Consensus 97 ----~~~~~~-~~l~l~li-~---iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw 167 (493)
T PRK15462 97 ----EIHPSF-LYLSLAII-V---CGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSW 167 (493)
T ss_pred ----hcchhH-HHHHHHHH-H---HhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhCh
Confidence 011111 11111111 1 111111233356789999985 799999999999999888888888877777778
Q ss_pred chhHHHHHHHHHHHHHh
Q 010317 455 GGTFFLLAGITTVGTIF 471 (513)
Q Consensus 455 ~~~~~~~~~~~~~~~~~ 471 (513)
...|.+.++..+++.+.
T Consensus 168 ~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 168 AMGFGLAAVGMIAGLVI 184 (493)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78887766544444333
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.9e-07 Score=96.24 Aligned_cols=154 Identities=8% Similarity=0.052 Sum_probs=105.5
Q ss_pred hhHHHHhhhCCCchhHHHHHH-HHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHH---Hhc-CcHHHHHHHHH
Q 010317 54 AVLYIKEDLEITEVQVEVLVG-ILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAM---GLA-PNYPFLIVGRM 128 (513)
Q Consensus 54 ~~~~~~~~~~~s~~~~~~~~s-~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~---~~~-~~~~~l~~~R~ 128 (513)
..|++.+++|.+.++.++..+ ...++..+|.+++|+++||+|||+.+.++.++..+..... +.. ++...+.+.-+
T Consensus 245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~ 324 (491)
T PRK11010 245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVF 324 (491)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 445677789999999999874 5568999999999999999999998877666555544322 233 35444444555
Q ss_pred HhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHH-HHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHh
Q 010317 129 IAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSG-YVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVL 207 (513)
Q Consensus 129 l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~ 207 (513)
+..++.|...+....+..+..+.+.++...++.+....+|..++ ++.+.... ..||+..|.+.++.+++..+...
T Consensus 325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~----~~G~~~~f~~~~~~~l~~l~~~~ 400 (491)
T PRK11010 325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE----AHGWPTFYLFSVAAAVPGLLLLL 400 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhChHHHHHHHHHHHHHHHHHHH
Confidence 54444444444456777888898889988888877777776544 33333333 45899988887777766655554
Q ss_pred ccCC
Q 010317 208 IMPE 211 (513)
Q Consensus 208 ~lpE 211 (513)
.+++
T Consensus 401 ~~~~ 404 (491)
T PRK11010 401 VCRQ 404 (491)
T ss_pred HHHh
Confidence 4443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.1e-07 Score=89.37 Aligned_cols=163 Identities=18% Similarity=0.202 Sum_probs=98.5
Q ss_pred hhccHH-HHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchh
Q 010317 308 VIYYTP-AVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTV 386 (513)
Q Consensus 308 ~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (513)
.....| .+.++.+.+... .........+...++.++.|++.||+|||+.++.+.+...++.++..+. .+.+
T Consensus 15 ~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------~~~~ 86 (352)
T PF07690_consen 15 ISPALPLYLAEELGLSPSQ-IGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-------SNFW 86 (352)
T ss_dssp HHHHHH-HHHCCSTTTSHC-HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-------CCHH
T ss_pred HHHHHHHHHHHccCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-------hhHH
Confidence 344555 344444434333 2234555667788899999999999999998888776655553322211 1112
Q ss_pred HHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 010317 387 VVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITT 466 (513)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (513)
......+.. +.......+....+..|.+|++.|+.+.++......++..+.+.....+.+..++.+.|++.+++.+
T Consensus 87 ~~~~~~~l~----g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~ 162 (352)
T PF07690_consen 87 LLLIARFLL----GIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSL 162 (352)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHH
T ss_pred HHhhhcccc----ccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhh
Confidence 111111111 1111122235567889999999999999999998888766665555555555667788888888888
Q ss_pred HHHHhhheecccCCCC
Q 010317 467 VGTIFFYVFLPETKGK 482 (513)
Q Consensus 467 ~~~~~~~~~~pet~~~ 482 (513)
+..++..++.++++.+
T Consensus 163 ~~~il~~~~~~~~~~~ 178 (352)
T PF07690_consen 163 IAAILFILFLPEPPPP 178 (352)
T ss_dssp HHHHHHHCCC---STT
T ss_pred hhhhhHhhhhhhcccc
Confidence 8766544555554433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.4e-07 Score=93.80 Aligned_cols=175 Identities=14% Similarity=0.093 Sum_probs=105.0
Q ss_pred HHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHH
Q 010317 295 GINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGI 374 (513)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~ 374 (513)
++..+....-...+..-.|.+.++.+.+...... ......++...+.+..|++.||+|||+.++.+.....++.++.+.
T Consensus 12 ~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~-~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~ 90 (495)
T PRK14995 12 VLVYIPVAIDATVLHVAAPTLSMTLGASGNELLW-IIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAF 90 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHH-HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 3333444333344555678888776654433322 333444555667788999999999999998877665555444442
Q ss_pred HhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeeccc-CChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010317 375 GSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEI-FPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLS 453 (513)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el-~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (513)
. ++.......-... +.......+.......+. .|++.|+++.|+......++..+.+.....+.+..+
T Consensus 91 a-------~~~~~li~~r~l~----G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g 159 (495)
T PRK14995 91 S-------PTASWLIATRALL----AIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY 159 (495)
T ss_pred c-------CCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 1 1111111111111 111111112222233344 478999999999998888877777766666777778
Q ss_pred cchhHHHHHHHHHHHHHhhheecccCCC
Q 010317 454 FGGTFFLLAGITTVGTIFFYVFLPETKG 481 (513)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~pet~~ 481 (513)
+.+.|++...+.++..+...+++||..+
T Consensus 160 wr~~f~i~~~~~~~~~~l~~~~l~~~~~ 187 (495)
T PRK14995 160 WGSVFLINVPIVLVVMGLTARYVPRQAG 187 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 8888888777777766666666777543
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.2e-07 Score=92.04 Aligned_cols=139 Identities=8% Similarity=0.048 Sum_probs=107.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhccccccccc
Q 010317 63 EITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISP 142 (513)
Q Consensus 63 ~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~ 142 (513)
+.+..+.+...++..+...++.++.+++.||+|||+.+.++.++..+...+..++++.+.+++.+++.|++.+.......
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678888888888999999999999999999999999998888887778888999889999999998766555555
Q ss_pred ceeeccCCCcccccccch-hhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHH
Q 010317 143 VYTAEISPTMKRGFLTSL-PEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGV 204 (513)
Q Consensus 143 ~~~~e~~p~~~R~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~ 204 (513)
.+..|..|++.|+...+. ++....+|..+++.+...+. +..||+..|.+.++..++..+
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~---~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMY---DSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHH---HhcccHHHHHHHHHHHHHHHH
Confidence 567777888888776665 45566777777765544433 234899999887777665544
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-07 Score=95.24 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=122.5
Q ss_pred hhhHHH-HhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhh
Q 010317 53 GAVLYI-KEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAG 131 (513)
Q Consensus 53 ~~~~~~-~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G 131 (513)
..+|.+ ++++|.++..+|++.+++.+|..+|++..+++.+|+++++.+..+.++++++.+..+++++.+..++.-++.|
T Consensus 239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G 318 (524)
T PF05977_consen 239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAG 318 (524)
T ss_pred HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 345654 5678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHH
Q 010317 132 IGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVI 202 (513)
Q Consensus 132 ~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~ 202 (513)
++.........+.+.+..|++.||++.++++.....+..+|..+...+. +..|-+..+.+.++..++.
T Consensus 319 ~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la---~~~g~~~al~~a~~~lll~ 386 (524)
T PF05977_consen 319 AAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA---DHFGVRTALLIAGAALLLS 386 (524)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCHHHHHHHHHHHHHHH
Confidence 9988877777788899999999999999998877777777766654443 2446777776665544333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.1e-07 Score=89.07 Aligned_cols=163 Identities=12% Similarity=0.046 Sum_probs=97.2
Q ss_pred hhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCch
Q 010317 306 DAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPT 385 (513)
Q Consensus 306 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (513)
.......|.+.++.+.+.... ........++..++.++.+++.||+|||+.+..+.....++.++.+.. ++.
T Consensus 20 ~~~~~~l~~~~~~~g~s~~~~-g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~-------~~~ 91 (382)
T PRK10091 20 FGIMGVLTELAHDVGISIPAA-GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS-------SSY 91 (382)
T ss_pred HHHHhChHHHHHHcCCCHHHH-hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh-------CcH
Confidence 344456677666665543332 224455667788889999999999999999988766655554444321 111
Q ss_pred hHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Q 010317 386 VVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGIT 465 (513)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (513)
+.............+. ..+....+..|.+|++.|+.+.++......++..+.+.....+.+..++.+.|++.+.+.
T Consensus 92 ~~l~~~r~l~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~ 167 (382)
T PRK10091 92 LMLAIGRLVSGFPHGA----FFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFN 167 (382)
T ss_pred HHHHHHHHHHHhhhHH----HHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHH
Confidence 2111111111111111 112233467899999999999988776666655444444444445567778888887776
Q ss_pred HHHHHhhheecccCC
Q 010317 466 TVGTIFFYVFLPETK 480 (513)
Q Consensus 466 ~~~~~~~~~~~pet~ 480 (513)
++..+...+.+||.+
T Consensus 168 ~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 168 IAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHHhCCCCC
Confidence 666555556678754
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-06 Score=85.74 Aligned_cols=164 Identities=19% Similarity=0.213 Sum_probs=91.9
Q ss_pred cchhhhccHHH-HHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCC
Q 010317 304 GNDAVIYYTPA-VFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGS 382 (513)
Q Consensus 304 ~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (513)
..+....+.|. +-++.+.+.... ........++..++.++.+++.||+|||+.++.+.+...++.++.+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~------ 88 (366)
T TIGR00886 16 VWFAFSPLAVQMIKDDLGLSTAQL-GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV------ 88 (366)
T ss_pred HHHHhHHhhhHHHHHHhCCCHHHh-hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh------
Confidence 34445566775 445555444332 2344556677888899999999999999998887666555544443321
Q ss_pred CchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH----------hc
Q 010317 383 TPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISH----------RL 452 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~ 452 (513)
.+.+......+.. +... +..+....+.+|.+|++.|+.+.++.....+++..+.+...+.+.. ..
T Consensus 89 ~~~~~~~~~~~~~----g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~ 163 (366)
T TIGR00886 89 QSYSVLLLLRLFI----GIAG-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHL 163 (366)
T ss_pred hhHHHHHHHHHHH----HHhc-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 0111111111111 1111 1112234577899999999999999887777655554444333332 12
Q ss_pred ccchhH-HHHHHHHHHHHHhhheecccC
Q 010317 453 SFGGTF-FLLAGITTVGTIFFYVFLPET 479 (513)
Q Consensus 453 ~~~~~~-~~~~~~~~~~~~~~~~~~pet 479 (513)
++.+.+ +..+++..+..+......+|+
T Consensus 164 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (366)
T TIGR00886 164 AWGWAFVIVPAGILLLPALLIFFVGADT 191 (366)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhcccC
Confidence 456666 333444444444444445554
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.7e-07 Score=88.42 Aligned_cols=159 Identities=12% Similarity=0.008 Sum_probs=95.1
Q ss_pred hccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHH
Q 010317 309 IYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVV 388 (513)
Q Consensus 309 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (513)
....|.+-++.+.+...... ......++..++.+..|++.||+|||++++.+........+ ... . .......
T Consensus 11 ~~~lp~i~~~~~~s~~~~g~-~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~-----~-~~~~~~l 82 (368)
T TIGR00903 11 SPVLSLVAEDIDVSKEELGL-LAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLL-----D-PFNYEWL 82 (368)
T ss_pred HhhHHHHHHHhCcCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHH-----H-hccHHHH
Confidence 44567777766654433222 33445667788889999999999999876543222211111 110 0 0111111
Q ss_pred HHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 010317 389 VLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVG 468 (513)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (513)
...-+....... .....+...+|.+|++.|+++.++......++..+.+.....+.+..+++..|++.+++.++.
T Consensus 83 ~~~R~l~G~g~~-----~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~ 157 (368)
T TIGR00903 83 LACQLLAALGQP-----FLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAG 157 (368)
T ss_pred HHHHHHHHhHhH-----HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 111111111111 111223344789999999999999988888776666666566666778888888888887777
Q ss_pred HHhhheecccCC
Q 010317 469 TIFFYVFLPETK 480 (513)
Q Consensus 469 ~~~~~~~~pet~ 480 (513)
.+..++.+||..
T Consensus 158 ~~~~~~~lp~~p 169 (368)
T TIGR00903 158 IILVLAALPALP 169 (368)
T ss_pred HHHHHHHcCCCC
Confidence 777777788864
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-06 Score=85.18 Aligned_cols=160 Identities=12% Similarity=0.098 Sum_probs=90.9
Q ss_pred ccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHH
Q 010317 310 YYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVV 389 (513)
Q Consensus 310 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
...|.+.++.+.+..... .......+...++.++.++++||+|||+.+..+........+..... .+.....
T Consensus 29 p~~~~i~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-------~~~~~l~ 100 (394)
T PRK11652 29 PAIADMARDLNVREGAVQ-AVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA-------HSLTVLI 100 (394)
T ss_pred ccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-------ccHHHHH
Confidence 345666666655443332 23445666778888999999999999999887655444443333221 1111111
Q ss_pred HHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Q 010317 390 LCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGT 469 (513)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (513)
...... ++......+....+..|.+|.+.|+.+.++.+....++..+.+.....+.+..++.+.|++.+++.++..
T Consensus 101 ~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~ 176 (394)
T PRK11652 101 AASAIQ----GLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVT 176 (394)
T ss_pred HHHHHH----HhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 111111 1111111123344567888988888888877665555444444444444555567777877766665555
Q ss_pred HhhheecccCCC
Q 010317 470 IFFYVFLPETKG 481 (513)
Q Consensus 470 ~~~~~~~pet~~ 481 (513)
+...++.||++.
T Consensus 177 ~~~~~~~~~~~~ 188 (394)
T PRK11652 177 FSMARWMPETRP 188 (394)
T ss_pred HHHHHhCCccCc
Confidence 555556787643
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-07 Score=91.87 Aligned_cols=110 Identities=10% Similarity=0.150 Sum_probs=90.0
Q ss_pred hHHHHhhhCCCchhHHHHHHHHH-HHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhc-----------CcHHH
Q 010317 55 VLYIKEDLEITEVQVEVLVGILN-VFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLA-----------PNYPF 122 (513)
Q Consensus 55 ~~~~~~~~~~s~~~~~~~~s~~~-~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~-----------~~~~~ 122 (513)
.|...+++|.++++.+.+.++.. ++..+|.+++|+++||+|||+.+..+.++..++.....+. ++.+.
T Consensus 232 ~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (356)
T TIGR00901 232 TTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLM 311 (356)
T ss_pred HHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHH
Confidence 34444458999999988877655 6788999999999999999999998888887776655442 34567
Q ss_pred HHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHH
Q 010317 123 LIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVF 164 (513)
Q Consensus 123 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~ 164 (513)
++.+.++.+++.+...+....++.|.+|+++||+..++.+..
T Consensus 312 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 353 (356)
T TIGR00901 312 LFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSL 353 (356)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 888899999999999999999999999999999998876543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.6e-07 Score=89.35 Aligned_cols=127 Identities=15% Similarity=0.115 Sum_probs=97.6
Q ss_pred hhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhcccccc-ccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 010317 54 AVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSD-YIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGI 132 (513)
Q Consensus 54 ~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d-r~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~ 132 (513)
..|...++.+.++.+.++..++..++...+..+.++..| |++.++.+..+.++..++....++.++++.+.+..++.|+
T Consensus 230 ~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 309 (400)
T PRK11646 230 MLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYI 309 (400)
T ss_pred hhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 345544454446778888887777776666666666665 5676777778888888887777888888888788888888
Q ss_pred hcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhc
Q 010317 133 GVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALS 180 (513)
Q Consensus 133 ~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~ 180 (513)
+.+...+....++.|..|+++||+..++.+....+|..+++.+...+.
T Consensus 310 g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~ 357 (400)
T PRK11646 310 GSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLF 357 (400)
T ss_pred HHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHH
Confidence 888777777788999999999999999999888888888877655543
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-05 Score=79.99 Aligned_cols=143 Identities=13% Similarity=0.191 Sum_probs=81.3
Q ss_pred HHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccce
Q 010317 330 INVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPI 409 (513)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (513)
+..++.+.+.+..+..+++.||+|.|+++..+.....+..+..+..... ..++....+..-....+.+ +..+.
T Consensus 75 l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~---~~~s~~~lli~r~l~Gigg----~~f~~ 147 (462)
T PRK15034 75 LTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQN---PNTPFGIFIVIALLCGFAG----ANFAS 147 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcc---cCCCHHHHHHHHHHHHHHH----HhHHH
Confidence 4455667777887888999999999999887766655554444432110 0111221111111111111 11123
Q ss_pred eeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHH-----Hh-------------cccchhHHHHHHHHHHHHHh
Q 010317 410 TWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSIS-----HR-------------LSFGGTFFLLAGITTVGTIF 471 (513)
Q Consensus 410 ~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~ 471 (513)
....+++.||++.|+++.|+....++++..+...+.+... .. .++..+.+++..+.++..+.
T Consensus 148 ~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~ 227 (462)
T PRK15034 148 SMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIA 227 (462)
T ss_pred HHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999998888876655444433321 11 11333445666666666656
Q ss_pred hheecccC
Q 010317 472 FYVFLPET 479 (513)
Q Consensus 472 ~~~~~pet 479 (513)
.++++++.
T Consensus 228 ~~~~~~~~ 235 (462)
T PRK15034 228 AWSGMNDI 235 (462)
T ss_pred HHHhCCCc
Confidence 55555553
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-06 Score=84.07 Aligned_cols=143 Identities=10% Similarity=0.029 Sum_probs=100.0
Q ss_pred hhcccccchhhHHHHh--hhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHH
Q 010317 45 GYDIGVMSGAVLYIKE--DLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPF 122 (513)
Q Consensus 45 g~~~~~~~~~~~~~~~--~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~ 122 (513)
|.+.+..+....++.+ .+|+++++.++..+.+..+..+|.++.++++||+|+|+.+.++..+..++..+....++...
T Consensus 154 g~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~ 233 (310)
T TIGR01272 154 GAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA 233 (310)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3444444444456653 37899999999999999999999999999999999999998888888877766655555433
Q ss_pred HHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHH-HHHHhcCCCCCcchHHHHHh
Q 010317 123 LIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYV-FNYALSGLPGNINWRIMLGL 194 (513)
Q Consensus 123 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~~Wr~~~~~ 194 (513)
+ ..-++.|++.+..++.......+..|++ .+.+.++.. ...+|..+.+. .+.... ..+-++.+++
T Consensus 234 ~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~~-~~~~Gg~i~P~l~G~lad----~~g~~~a~~v 299 (310)
T TIGR01272 234 M-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGILC-LAIVGGAIVPLLQGSLAD----CLGIQLAFAL 299 (310)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHHH-HHHhcchHHHHHHHHHHH----hccchHHHHH
Confidence 3 3555889999999998888777777754 445555543 33455555544 333322 3456666653
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.8e-06 Score=87.87 Aligned_cols=116 Identities=20% Similarity=0.194 Sum_probs=91.6
Q ss_pred hhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHhhhhcccccc
Q 010317 61 DLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAP-NYPFLIVGRMIAGIGVGYSLM 139 (513)
Q Consensus 61 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~R~l~G~~~g~~~~ 139 (513)
.++ ++.+.++..++..++..++.+++++++||+|||+++..+.++..++.+...+.+ +...+++..++.|++.+...+
T Consensus 252 ~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 330 (437)
T TIGR00792 252 VLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTG 330 (437)
T ss_pred ecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHH
Confidence 344 455677778888899999999999999999999999999988888777666653 566777788888999888887
Q ss_pred cccceeeccCC-------CcccccccchhhHHHHHHHHHHHHHHH
Q 010317 140 ISPVYTAEISP-------TMKRGFLTSLPEVFIVLGILSGYVFNY 177 (513)
Q Consensus 140 ~~~~~~~e~~p-------~~~R~~~~~~~~~~~~~G~~~~~~~~~ 177 (513)
....+++|..+ .+.+|...++.+....+|..++..+..
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g 375 (437)
T TIGR00792 331 LVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVG 375 (437)
T ss_pred HHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888765 456788888888887778776655533
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.1e-07 Score=91.66 Aligned_cols=159 Identities=21% Similarity=0.205 Sum_probs=133.3
Q ss_pred ccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccC--chHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Q 010317 50 VMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIG--RRYTIVVAAATFLVGALAMGLAPNYPFLIVGR 127 (513)
Q Consensus 50 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~G--Rr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R 127 (513)
+....+|...++.+.++.+...+.++..+.-.+|-++.|+++|+.. ++..+.+++++.+++...+.+++++..++..-
T Consensus 316 ~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~ 395 (509)
T KOG2504|consen 316 VPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFS 395 (509)
T ss_pred HHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3444556677799999999999999999999999999999999999 67778888888889999999999999999999
Q ss_pred HHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHh
Q 010317 128 MIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVL 207 (513)
Q Consensus 128 ~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~ 207 (513)
.+.|++.|......+..+.|..+.++-..+.|+...+..++.++++-++..+....+ .|...|++.++..++....++
T Consensus 396 ~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg--~Y~~~f~~~g~~~~~s~~~~~ 473 (509)
T KOG2504|consen 396 ILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG--NYDHAFYFCGLCFLLSAVLLL 473 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC--CeeeehhhcChHHHHHHHHHH
Confidence 999999999999888889999999998888888888888888887666543332222 388899998888777776665
Q ss_pred ccC
Q 010317 208 IMP 210 (513)
Q Consensus 208 ~lp 210 (513)
..|
T Consensus 474 ~~~ 476 (509)
T KOG2504|consen 474 ILR 476 (509)
T ss_pred HhH
Confidence 555
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00012 Score=72.95 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCC
Q 010317 72 LVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPT 151 (513)
Q Consensus 72 ~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~ 151 (513)
..++.+....+..++.+.+.|+.|.|+.+.++..++.......-+- |-+-+++.-.+.|+|.+..+.....|++|..++
T Consensus 55 ~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~ 133 (461)
T KOG3098|consen 55 GQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTR 133 (461)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCCh
Confidence 3788899999999999999999999999999999998887765544 455667788999999999999999999999999
Q ss_pred cccccccchhhHHHHHHHHHHHHHHH
Q 010317 152 MKRGFLTSLPEVFIVLGILSGYVFNY 177 (513)
Q Consensus 152 ~~R~~~~~~~~~~~~~G~~~~~~~~~ 177 (513)
+.+.+..++.-.....+.++|.+...
T Consensus 134 ~tie~Nisi~Wai~~~~li~Ggi~l~ 159 (461)
T KOG3098|consen 134 ETIERNISIFWAIGQSSLIIGGIILF 159 (461)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHhhe
Confidence 99998888765555555565554433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.7e-06 Score=83.10 Aligned_cols=151 Identities=13% Similarity=0.042 Sum_probs=86.2
Q ss_pred HHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHH
Q 010317 313 PAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCI 392 (513)
Q Consensus 313 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (513)
|.+.++.+.+... ......+..++..++.++.+++.||+|||+.+..+......+.+..... .+.+......
T Consensus 30 ~~i~~~~~~s~~~-~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~ 101 (401)
T PRK11043 30 KAIQADLQTSASA-VSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-------ESAAQLLVLR 101 (401)
T ss_pred HHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-------cCHHHHHHHH
Confidence 4444555543332 2224445666778889999999999999999887655444333333221 1111111111
Q ss_pred HHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhh
Q 010317 393 IAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFF 472 (513)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (513)
... +.......+....+..|.+|++.|+...+..+....++..+.+.....+.+..++...+++.+.+.++..+..
T Consensus 102 ~l~----G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 177 (401)
T PRK11043 102 FVQ----AVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPT 177 (401)
T ss_pred HHH----HhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 111 1110011112234567899999888888887777776555555555555566677777877777766665544
Q ss_pred hee
Q 010317 473 YVF 475 (513)
Q Consensus 473 ~~~ 475 (513)
.+.
T Consensus 178 ~~~ 180 (401)
T PRK11043 178 LRL 180 (401)
T ss_pred HHc
Confidence 333
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.8e-06 Score=98.67 Aligned_cols=140 Identities=14% Similarity=0.079 Sum_probs=109.8
Q ss_pred HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhc-------------------
Q 010317 57 YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLA------------------- 117 (513)
Q Consensus 57 ~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~------------------- 117 (513)
++++.+|.+..+.+++.+.+.+|..+|+++.|+++|+.++++.+..+.++.+++.+..++.
T Consensus 251 ~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 330 (1140)
T PRK06814 251 LAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLS 330 (1140)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhc
Confidence 4666789999999999999999999999999999999888777766666666655544443
Q ss_pred -CcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhh
Q 010317 118 -PNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAA 196 (513)
Q Consensus 118 -~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~ 196 (513)
.+.+.++++-++.|++.+...+...+++.+..|++.||+++++.+....+|..++.++...+... ..+....+++.+
T Consensus 331 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~--~~~~~~~~~~~~ 408 (1140)
T PRK06814 331 KRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL--GFSIPWIILFIA 408 (1140)
T ss_pred ccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh--ccCHHHHHHHHH
Confidence 67777888899999999988888889999999999999999999988888877777665444311 235566555544
Q ss_pred HH
Q 010317 197 VP 198 (513)
Q Consensus 197 ~~ 198 (513)
+.
T Consensus 409 ~~ 410 (1140)
T PRK06814 409 LA 410 (1140)
T ss_pred HH
Confidence 43
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.2e-07 Score=88.21 Aligned_cols=146 Identities=16% Similarity=0.189 Sum_probs=100.0
Q ss_pred HHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccce
Q 010317 330 INVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPI 409 (513)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (513)
+.....++.++++.+.|++.||+.||+++.+|..+..++.+..+.... .|...++ =.+.+..-....++
T Consensus 73 l~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~-------Fwq~~l~----R~~vGiGeAs~~~i 141 (493)
T KOG1330|consen 73 LQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNH-------FWQVLLC----RGFVGIGEASYSPI 141 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHH-------HHHHHHH----HHHhccchhhhccc
Confidence 555667788899999999999999999999988777777666665321 1111111 11111212223456
Q ss_pred eeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHH-HHHh-cccchhHHHHHHHHHHHHHhhheecccCCCCCHHHH
Q 010317 410 TWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLS-ISHR-LSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEEM 487 (513)
Q Consensus 410 ~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~e~ 487 (513)
...+++|.||...|+++.++.+....+++++. ++... .... ..++++|..-+++.+++++++.++.+|.+++..+|.
T Consensus 142 a~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG-~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~ 220 (493)
T KOG1330|consen 142 APSLIADSFPDDKRSRVLGIFYFAIPVGSGLG-YVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEV 220 (493)
T ss_pred chhHhhhcCcchhhhHHHHHhhhhccccccee-EEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccccccc
Confidence 67788999999999999999999888765442 22222 2222 237889999999999998888888888766544443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-06 Score=86.04 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=89.3
Q ss_pred hhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhcccccccc-CchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 010317 54 AVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYI-GRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGI 132 (513)
Q Consensus 54 ~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~-GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~ 132 (513)
..|.+.++.|.+..+.+...+.+.++..++.++.|+++||+ +||+.+.++.++..++.....+.++..... .-.+.|+
T Consensus 219 ~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~ 297 (355)
T TIGR00896 219 WLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGL 297 (355)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHH
Confidence 34555566899999999999999999999999999999999 577777888888877777666665543332 4567899
Q ss_pred hcccccccccceeeccC-CCcccccccchhhHHHHHHHHHHHHHH
Q 010317 133 GVGYSLMISPVYTAEIS-PTMKRGFLTSLPEVFIVLGILSGYVFN 176 (513)
Q Consensus 133 ~~g~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~G~~~~~~~~ 176 (513)
+.|...+.....+.+.. ++++++...++.+....+|..+++.+.
T Consensus 298 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~ 342 (355)
T TIGR00896 298 GQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFV 342 (355)
T ss_pred hhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887776656555444 455678777776665556655565443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.2e-07 Score=66.07 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=74.7
Q ss_pred HhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHH
Q 010317 44 LGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFL 123 (513)
Q Consensus 44 ~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l 123 (513)
.|..+..+.+.+|.+++|.++|.++.+++.|.-++||.+|.+...++.++..+++.+..+.+...+....+++..++..+
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 45677888899999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred H
Q 010317 124 I 124 (513)
Q Consensus 124 ~ 124 (513)
.
T Consensus 84 ~ 84 (85)
T PF06779_consen 84 S 84 (85)
T ss_pred h
Confidence 3
|
Note that many members are hypothetical proteins. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-06 Score=86.11 Aligned_cols=144 Identities=15% Similarity=-0.025 Sum_probs=99.6
Q ss_pred HHHHhhhCCCchhHHHHHHHHH-HHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHh------cCcHHHHHHHHH
Q 010317 56 LYIKEDLEITEVQVEVLVGILN-VFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGL------APNYPFLIVGRM 128 (513)
Q Consensus 56 ~~~~~~~~~s~~~~~~~~s~~~-~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~------~~~~~~l~~~R~ 128 (513)
+++ +|.|.++++.++..+... ....+|.++.|++.||+|+|+.+..+..+..+....... .++...+.....
T Consensus 233 ~~l-~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (390)
T TIGR02718 233 LYL-VDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSA 311 (390)
T ss_pred HHH-HhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHH
Confidence 444 568999999999888765 577788999999999999999998877665333222211 233334444455
Q ss_pred HhhhhcccccccccceeeccCCC-cccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHH
Q 010317 129 IAGIGVGYSLMISPVYTAEISPT-MKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIG 203 (513)
Q Consensus 129 l~G~~~g~~~~~~~~~~~e~~p~-~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~ 203 (513)
+.+++.|...+....++.+..++ +.++...+..+....+|..+++.++..+. +..||+..|++.++..++..
T Consensus 312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~---~~~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 312 FGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLT---DRFGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHccHHHHHHHHHHHHHHH
Confidence 55555666555555565666665 78999999999888899888887755443 23478888887766555443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-05 Score=83.39 Aligned_cols=164 Identities=18% Similarity=0.209 Sum_probs=91.3
Q ss_pred chhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCc
Q 010317 305 NDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTP 384 (513)
Q Consensus 305 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (513)
.+.+..+.|.+-++.+.+......... . +.......+..|++.||+|||+++.++.+...++.++.++...... ..
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~s-v-g~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i--~~ 118 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITT-V-GIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI--EG 118 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHH-H-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc--cC
Confidence 455566777776666655433222221 2 2233345567899999999999999988777776666655321100 11
Q ss_pred hhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Q 010317 385 TVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGI 464 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (513)
+.........+...+..+ ..+.....+.+.|| +.|+++.|+......+++.+.+........ .++...|++.+.+
T Consensus 119 s~~~l~l~r~l~G~G~~~---~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl 193 (591)
T PTZ00207 119 SVVRLSVYNGLMTLGCML---FDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSF 193 (591)
T ss_pred cHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHH
Confidence 122111111111111111 11122344577888 669999999999998877765555444333 2345667777766
Q ss_pred HHHHHHhhheecc
Q 010317 465 TTVGTIFFYVFLP 477 (513)
Q Consensus 465 ~~~~~~~~~~~~p 477 (513)
.++..++...+++
T Consensus 194 ~~vv~ll~~~~vr 206 (591)
T PTZ00207 194 ALVVGILAIVFMR 206 (591)
T ss_pred HHHHHHHHHhhee
Confidence 6665555544443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-06 Score=89.60 Aligned_cols=140 Identities=9% Similarity=0.021 Sum_probs=89.9
Q ss_pred HHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccce
Q 010317 330 INVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPI 409 (513)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (513)
+.....++..++.++.+++.||+|||+.+..+.+...+..++...... . ... .++..-+..+.......+.
T Consensus 81 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----~-~~~---~l~~~r~~~G~~~~~~~~~ 151 (465)
T TIGR00894 81 ILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG-----G-GIA---LVVFCRVIQGLAQGSVSPA 151 (465)
T ss_pred HHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH-----c-Cch---HHHHHHHHHHHhcccchhh
Confidence 334455677888899999999999999988766544444333221110 0 011 1111222223333333455
Q ss_pred eeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cccchhHHHHHHHHHHHHHhhheeccc
Q 010317 410 TWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHR-LSFGGTFFLLAGITTVGTIFFYVFLPE 478 (513)
Q Consensus 410 ~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pe 478 (513)
...+.+|.+|++.|+++.|+......++..+.+.....+.+. .++...|++.+++.++..+..+.+.+|
T Consensus 152 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 152 THKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 567889999999999999999988888777766666666666 377888888887776665555444444
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.5e-06 Score=83.99 Aligned_cols=162 Identities=11% Similarity=0.043 Sum_probs=100.0
Q ss_pred HHHhhhccchhhhccHHHHHHhC---CCCCchhHHHHHHHHhHHHHHHHHHHHHHhhc-cCChhHHHhhhHHHHHHHHHH
Q 010317 297 NFFMQASGNDAVIYYTPAVFKGA---GIHRKPVLFGINVVMGLAKTFFVVLSALHLDK-FGRRPLLLLGSSGMVGSLLLL 372 (513)
Q Consensus 297 ~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~grr~~~~~~~~~~~~~~~~~ 372 (513)
..++...+++....++|.++.+. +.+.... ............++.+++|++.|| +|||+.+..+.+....+.+++
T Consensus 18 ~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~a-g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~ 96 (475)
T TIGR00924 18 VELWERFSYYGMQGILAVYLVQQAGLGFSQEQA-FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFML 96 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH-HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 33444556677777888888653 3333222 223344556778889999999999 899999988776655555444
Q ss_pred HHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChh---hHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010317 373 GIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLR---LRAQGSALAISVNRLVSGVISMTFLSIS 449 (513)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~---~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 449 (513)
+.. ............ .+.......+......+|.+|++ .|+.+.++.....++++.+.+.....+.
T Consensus 97 ~~~-------~~~~~~~~~~~l----~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~ 165 (475)
T TIGR00924 97 AMS-------IYPDLIFYGLGT----IAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA 165 (475)
T ss_pred Hhc-------ccHhHHHHHHHH----HHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH
Confidence 321 111111111111 11211122344456677888864 4888999999999988777777777777
Q ss_pred HhcccchhHHHHHHHHHHHHH
Q 010317 450 HRLSFGGTFFLLAGITTVGTI 470 (513)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~ 470 (513)
+..++...|.+.++..+++.+
T Consensus 166 ~~~g~~~~f~~~~~~~~~~~l 186 (475)
T TIGR00924 166 ENYGYHVGFNLAAVGMVIGLL 186 (475)
T ss_pred HhcChHHHHHHHHHHHHHHHH
Confidence 767777788776655544433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.8e-06 Score=84.44 Aligned_cols=126 Identities=20% Similarity=0.232 Sum_probs=100.8
Q ss_pred cccchhhHHHHh-hhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcC--cHHHHHH
Q 010317 49 GVMSGAVLYIKE-DLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAP--NYPFLIV 125 (513)
Q Consensus 49 ~~~~~~~~~~~~-~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~ 125 (513)
...+...++..+ .++.+ ...+....+..++..++.+++++++||+|||+++..+..+..++..+..+.+ |.+.+++
T Consensus 242 ~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 320 (428)
T PF13347_consen 242 ALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLI 320 (428)
T ss_pred hhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444555444 45544 5677888889999999999999999999999999999999999999888886 9999999
Q ss_pred HHHHhhhhcccccccccceeeccCCCc-------ccccccchhhHHHHHHHHHHHHH
Q 010317 126 GRMIAGIGVGYSLMISPVYTAEISPTM-------KRGFLTSLPEVFIVLGILSGYVF 175 (513)
Q Consensus 126 ~R~l~G~~~g~~~~~~~~~~~e~~p~~-------~R~~~~~~~~~~~~~G~~~~~~~ 175 (513)
.-++.|++.+........+++|..+.+ +.|...++.....-+|..++..+
T Consensus 321 ~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i 377 (428)
T PF13347_consen 321 LFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAI 377 (428)
T ss_pred HHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHH
Confidence 999999999999999999999988733 34667777666666665555443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.5e-06 Score=81.99 Aligned_cols=140 Identities=12% Similarity=0.004 Sum_probs=104.0
Q ss_pred HHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcc
Q 010317 56 LYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVG 135 (513)
Q Consensus 56 ~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g 135 (513)
+++++.+|.++.+.++..+...+|..+|+++.+++.||+++|+.+..+.. .++.....++.++.+..++.-++.|++.+
T Consensus 230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g 308 (393)
T PRK11195 230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGG 308 (393)
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 35677899999999999999999999999999999999999988877753 34444445566777777778888999888
Q ss_pred cccccccceeeccCCCcc-cccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHH
Q 010317 136 YSLMISPVYTAEISPTMK-RGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVP 198 (513)
Q Consensus 136 ~~~~~~~~~~~e~~p~~~-R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~ 198 (513)
...+.....+.|..|++. +|+..++.+....+|..++..+...+... ...++..+...+..
T Consensus 309 ~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 370 (393)
T PRK11195 309 FFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKL--GVPVVAVIVGFGLL 370 (393)
T ss_pred hhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 877666677778766654 79998888888888877776665444311 12355555444444
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.8e-06 Score=83.68 Aligned_cols=143 Identities=12% Similarity=0.110 Sum_probs=96.0
Q ss_pred HHHHhhhCCCchhHHHHHHHHH-HHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHH---Hhc-CcHHHHHHHH---
Q 010317 56 LYIKEDLEITEVQVEVLVGILN-VFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAM---GLA-PNYPFLIVGR--- 127 (513)
Q Consensus 56 ~~~~~~~~~s~~~~~~~~s~~~-~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~---~~~-~~~~~l~~~R--- 127 (513)
+.+.+++|.++++.++..+... ++..+|.+++|++.||+|||+.+.++..+..+..... ++. ++.+.+.+.-
T Consensus 234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 313 (402)
T PRK11902 234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE 313 (402)
T ss_pred HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 5677889999999999876654 5689999999999999999999887777766554333 343 4555544443
Q ss_pred -HHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHH
Q 010317 128 -MIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVG 205 (513)
Q Consensus 128 -~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~ 205 (513)
+..|++.+........++.+..|.+.++...+ ...+|...+..++..+. +..||+..|.+.++.+++..+.
T Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~G~l~---~~~G~~~~f~~~~~~~~~~~~~ 385 (402)
T PRK11902 314 NLCGGMGTAAFVALLMALCNRSFSATQYALLSA----LASVGRVYVGPTSGYLV---EAYGWPGFYLMTVVIALPGLAL 385 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH----HHHHHHHHHHHHHHHHH---HHhChHHHHHHHHHHHHHHHHH
Confidence 45566666667777778888888776654333 33344432222222222 3568999999888777665444
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-06 Score=84.34 Aligned_cols=168 Identities=17% Similarity=0.104 Sum_probs=112.3
Q ss_pred HhhcccccchhhH--HHHhhhCCCchhH--------HHHHHH-HHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHH
Q 010317 44 LGYDIGVMSGAVL--YIKEDLEITEVQV--------EVLVGI-LNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGAL 112 (513)
Q Consensus 44 ~g~~~~~~~~~~~--~~~~~~~~s~~~~--------~~~~s~-~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~ 112 (513)
..+|+..++..+. .+-+.++..+.+. .....+ ...++..|-.+...+.|+.|||++.+.+.+++++...
T Consensus 314 FllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~ 393 (538)
T KOG0252|consen 314 FLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFF 393 (538)
T ss_pred HhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHH
Confidence 3467666665442 3445444432221 112222 2344556888889999999999999999999999999
Q ss_pred HHHhcCc-H-------HHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHH-HHHhc-CC
Q 010317 113 AMGLAPN-Y-------PFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVF-NYALS-GL 182 (513)
Q Consensus 113 ~~~~~~~-~-------~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~-~~~~~-~~ 182 (513)
..++..| . ..+.+..++.-+|.+ ....++.+|.+|.+.|+..-++..+.--.|.+++... .+... ..
T Consensus 394 ~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~y 470 (538)
T KOG0252|consen 394 VIAGPYNQLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNY 470 (538)
T ss_pred HHcCCcccccccCceeehHHHHHHHHhcCCC---ceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccC
Confidence 9998877 1 233344444444433 3455778999999999999998766655666655433 22111 12
Q ss_pred CCCcchHHHHHhhhHHHHHHHHHHhccCCCch
Q 010317 183 PGNINWRIMLGLAAVPAAVIGVGVLIMPESPR 214 (513)
Q Consensus 183 ~~~~~Wr~~~~~~~~~~~i~~~~~~~lpEsp~ 214 (513)
+...+-|+.|++.+...++..+..+++|||.+
T Consensus 471 p~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 471 PPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred CccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 23568899999999888888888899999974
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.2e-06 Score=80.01 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=63.3
Q ss_pred HHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccce
Q 010317 330 INVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPI 409 (513)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (513)
+....++...+.+...|.++||+|||.++.+|.++.++...+.+... .. ..++..=+.++.+ .+.-++
T Consensus 73 lGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~--------~F---~afv~aR~l~Gi~-kgnl~v 140 (451)
T KOG2615|consen 73 LGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR--------NF---AAFVLARFLGGIF-KGNLSV 140 (451)
T ss_pred HhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH--------HH---HHHHHHHHhhhhc-cCchHH
Confidence 34456678888999999999999999999988777666655555321 11 1112211222233 233345
Q ss_pred eeeeecccCChhhHhhHHHHHHHHHHH
Q 010317 410 TWVYSSEIFPLRLRAQGSALAISVNRL 436 (513)
Q Consensus 410 ~~~~~~el~P~~~R~~~~g~~~~~~~~ 436 (513)
.-.+.+|+++.+.|+.+++.....-.+
T Consensus 141 ~rAiisdV~sek~r~l~ms~v~~a~~l 167 (451)
T KOG2615|consen 141 IRAIISDVVSEKYRPLGMSLVGTAFGL 167 (451)
T ss_pred HHHHHHhhcChhhccceeeeeehhhhc
Confidence 678899999999999998876655444
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.5e-05 Score=80.32 Aligned_cols=153 Identities=11% Similarity=0.080 Sum_probs=89.4
Q ss_pred hhhccchhhhccHHHHHHh-CCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhc-cCChhHHHhhhHHHHHHHHHHHHHhh
Q 010317 300 MQASGNDAVIYYTPAVFKG-AGIHRKPVLFGINVVMGLAKTFFVVLSALHLDK-FGRRPLLLLGSSGMVGSLLLLGIGSK 377 (513)
Q Consensus 300 ~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~grr~~~~~~~~~~~~~~~~~~~~~~ 377 (513)
+.-.+++....+++.++++ .+.+...... ..........+..+++|++.|| +|||+.++.+.+.+....+.+++..
T Consensus 25 ~er~~~y~~~~~l~~yl~~~lg~~~~~a~~-i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~- 102 (489)
T PRK10207 25 WERFGYYGVQGILAVFFVKQLGFSQEQAFI-TFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL- 102 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc-
Confidence 3444556666666666643 4443333322 2222333444555689999999 9999999988766655554444311
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChh--hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010317 378 ILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLR--LRAQGSALAISVNRLVSGVISMTFLSISHRLSFG 455 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~--~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (513)
... ........ ..+.......|.......|.||++ .|+.+.++.....+++..+.+...+.+.+..++.
T Consensus 103 ----~~~-~ll~~~~~----l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~ 173 (489)
T PRK10207 103 ----LKP-DLIFIALG----TIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYS 173 (489)
T ss_pred ----cch-hHHHHHHH----HHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChH
Confidence 111 11111111 112222223344566788999887 4577888888888887776666667777777777
Q ss_pred hhHHHHHH
Q 010317 456 GTFFLLAG 463 (513)
Q Consensus 456 ~~~~~~~~ 463 (513)
+.|++.++
T Consensus 174 ~~F~i~~i 181 (489)
T PRK10207 174 VTYNLCGA 181 (489)
T ss_pred HHHHHHHH
Confidence 78877544
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.2e-05 Score=75.71 Aligned_cols=149 Identities=11% Similarity=0.093 Sum_probs=98.6
Q ss_pred hCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCch-hHHHHHHHHHH
Q 010317 318 GAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPT-VVVVLCIIAVC 396 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 396 (513)
+.+.+... ...+..++.+.+.+..+.-+.+.||+|.|+..+.+.+...+-.+.++.... .++ +....+-+...
T Consensus 43 ~~~LS~~q-~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~-----~~~~~~ll~~gll~G 116 (417)
T COG2223 43 DFGLSEGQ-KGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT-----YPSTWQLLVIGLLLG 116 (417)
T ss_pred ccCCCHHH-HHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHcc-----CCchHHHHHHHHHHh
Confidence 33444333 344667788888899999999999999999988776655555444444322 111 11111111222
Q ss_pred HHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHHhhh
Q 010317 397 AFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLS---FGGTFFLLAGITTVGTIFFY 473 (513)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 473 (513)
..++.| ++...++++-||++.+|++.|+.. .+|++..+...+.|.+....+ +..+..++....++..+..+
T Consensus 117 ~~GasF-----av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~ 190 (417)
T COG2223 117 LAGASF-----AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAW 190 (417)
T ss_pred ccccee-----hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 345668899999999999999998 999988888777777776666 56667777777777666666
Q ss_pred eeccc
Q 010317 474 VFLPE 478 (513)
Q Consensus 474 ~~~pe 478 (513)
+.+.+
T Consensus 191 ~~~~d 195 (417)
T COG2223 191 LGMND 195 (417)
T ss_pred HHhCC
Confidence 65543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.1e-05 Score=76.29 Aligned_cols=171 Identities=12% Similarity=0.053 Sum_probs=91.5
Q ss_pred hhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhh----ccCChhHHHhh-hHHHHHHHHHHHHHhhcc---
Q 010317 308 VIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLD----KFGRRPLLLLG-SSGMVGSLLLLGIGSKIL--- 379 (513)
Q Consensus 308 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~grr~~~~~~-~~~~~~~~~~~~~~~~~~--- 379 (513)
...+.+.+++..+... ........+..+.+.+..++.|+++| |+|||+.++.+ .....++.++++......
T Consensus 23 ~~~~l~~yl~~lg~~~-~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~ 101 (477)
T TIGR01301 23 QLSLLTPYVQELGIPH-AWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLF 101 (477)
T ss_pred HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhc
Confidence 3344455666666533 22333455667788888999999999 59999988764 344444444444322110
Q ss_pred -C---CCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhH--hhHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 010317 380 -E---GSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLR--AQGSALAISVNRLVSGVISMTFLSIS---H 450 (513)
Q Consensus 380 -~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R--~~~~g~~~~~~~~~~~~~~~~~~~~~---~ 450 (513)
. .....+.....++.........+... +..-.+.+|+.|++.| +.+.++.+.+..+++.+. ...+... .
T Consensus 102 ~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~-~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg-~~~g~~~~~~~ 179 (477)
T TIGR01301 102 GDNLDKKTKPRAIIVFVVGFWILDVANNMLQ-GPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLG-YAAGAYSGLYK 179 (477)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHH
Confidence 0 00111111111122211111111111 2235678999998866 456776665555543332 2222111 1
Q ss_pred h-------------cccchhHHHHHHHHHHHHHhhheecccCCC
Q 010317 451 R-------------LSFGGTFFLLAGITTVGTIFFYVFLPETKG 481 (513)
Q Consensus 451 ~-------------~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 481 (513)
. .++...|++.+++.+++.+..++..+|..-
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~ 223 (477)
T TIGR01301 180 IFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPL 223 (477)
T ss_pred hcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence 0 134567888888888888888888888643
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.8e-05 Score=75.94 Aligned_cols=129 Identities=12% Similarity=0.033 Sum_probs=74.6
Q ss_pred ccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHH
Q 010317 310 YYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVV 389 (513)
Q Consensus 310 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
...|.+-++.+.+... ...+.....++..++++..+++.||+|||+.++.+...+..+.++...... ..+.+...
T Consensus 24 ~l~~~~~~~~~~s~~~-~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~----~~~~~~~l 98 (410)
T TIGR00885 24 PMVPQFQQAFTLTAFQ-AALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE----IMNYTLFL 98 (410)
T ss_pred HHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh----hccHHHHH
Confidence 4556665655544332 233455667788889999999999999999998877665555443321110 11111111
Q ss_pred HHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 010317 390 LCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLS 447 (513)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~ 447 (513)
..........+.. .+....+.+|+.|++.|+...++.+....+++.+.+.+...
T Consensus 99 ~~~~l~G~g~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~ 152 (410)
T TIGR00885 99 VGLFILTAGLGFL----ETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQ 152 (410)
T ss_pred HHHHHHHhhHHHH----HhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111 11223466788899999999999888888766655544433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-05 Score=81.41 Aligned_cols=135 Identities=10% Similarity=-0.036 Sum_probs=97.0
Q ss_pred HHH-HhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhc
Q 010317 56 LYI-KEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGV 134 (513)
Q Consensus 56 ~~~-~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~ 134 (513)
+++ ++.+|.++.+.++....+.++..+|.++.+++.||+|||+++..+.++..+...+..+.++.. .+..-.+.|++.
T Consensus 283 ~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~ 361 (438)
T PRK10133 283 RYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFM 361 (438)
T ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHH
Confidence 453 567899999999999999999999999999999999999999988888777666666665543 245567889999
Q ss_pred ccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcc-hHHHHHhhh
Q 010317 135 GYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNIN-WRIMLGLAA 196 (513)
Q Consensus 135 g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-Wr~~~~~~~ 196 (513)
+..++.......|..|. +.+...++.......|.+.+++.+.... ..| -|..|++..
T Consensus 362 ~~i~P~~~s~a~~~~~~-~~~~as~l~~~~~~g~~~~~~i~G~l~~----~~g~~~~~~~v~~ 419 (438)
T PRK10133 362 SIQYPTIFSLGIKNLGQ-DTKYGSSFIVMTIIGGGIVTPVMGFVSD----AAGNIPTAELIPA 419 (438)
T ss_pred HHHHHHHHHHHHcccch-hhccchhHHhHHhccchHHHHHHHHHHH----hccchHHHHHHHH
Confidence 99999988888887765 3566666655433333444444443332 223 455555433
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.8e-06 Score=83.47 Aligned_cols=119 Identities=18% Similarity=0.111 Sum_probs=90.3
Q ss_pred HHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHhhhhcc
Q 010317 58 IKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAP--NYPFLIVGRMIAGIGVG 135 (513)
Q Consensus 58 ~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~R~l~G~~~g 135 (513)
+++.+|.++...++......++..++.++.++++||+|+|+++.++.++..++.+...+.+ +.+.+++..++.|+|.+
T Consensus 255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~ 334 (448)
T PRK09848 255 VRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQG 334 (448)
T ss_pred EeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 4555776655444444444677888999999999999999999999998888877766654 56667777888999998
Q ss_pred cccccccceeeccCCCc-------ccccccchhhHHHHHHHHHHHHHH
Q 010317 136 YSLMISPVYTAEISPTM-------KRGFLTSLPEVFIVLGILSGYVFN 176 (513)
Q Consensus 136 ~~~~~~~~~~~e~~p~~-------~R~~~~~~~~~~~~~G~~~~~~~~ 176 (513)
...+......+|..|.+ ++|...++.+....+|..++..+.
T Consensus 335 ~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~ 382 (448)
T PRK09848 335 VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIP 382 (448)
T ss_pred HHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877644 358888888887777777765543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.17 E-value=2e-05 Score=81.15 Aligned_cols=153 Identities=16% Similarity=0.210 Sum_probs=83.4
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHH
Q 010317 312 TPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLC 391 (513)
Q Consensus 312 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
++.+.++.|...+.. .+.....+...++..+.|.++|.+|||...+.+.+..++..++.+.. ++...+.+
T Consensus 67 l~~I~~diG~~~~~~--w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA--------~~~~~~ia 136 (599)
T PF06609_consen 67 LPYINADIGGSDNWS--WFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA--------QNMNTFIA 136 (599)
T ss_pred HHHHHHhcCCCccch--HHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC--------CcHHHHHH
Confidence 344555555443332 24455566677777889999999999999988776555555544321 11221111
Q ss_pred HHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHH-HHHhcccchhHHHHHHHHHHHHH
Q 010317 392 IIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLS-ISHRLSFGGTFFLLAGITTVGTI 470 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 470 (513)
-..+.... .+...+....++|+.|.+.|..+.++... ..+.....+..... .....+++|.|++..++..++.+
T Consensus 137 g~~l~Gvg----aG~~~~~~~~isEl~p~k~R~~~~~~~~~-~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~v 211 (599)
T PF06609_consen 137 GMVLYGVG----AGVQELAALAISELVPNKWRGLGLAIASI-PFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALV 211 (599)
T ss_pred HHHHHHHh----hHHHHHHHHHHHHhcccchhhhHhHHHHH-HHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHH
Confidence 11111111 12222344557999999999887765532 22222211222221 22345788888888777666544
Q ss_pred hh-heecccC
Q 010317 471 FF-YVFLPET 479 (513)
Q Consensus 471 ~~-~~~~pet 479 (513)
.+ .++.|.+
T Consensus 212 l~~~fY~PP~ 221 (599)
T PF06609_consen 212 LIFFFYFPPP 221 (599)
T ss_pred HHHHHhCCCc
Confidence 33 3445544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2e-05 Score=71.61 Aligned_cols=123 Identities=12% Similarity=0.073 Sum_probs=89.4
Q ss_pred HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHH-HHHHhcCcHHHHHHHHHHhhhhcc
Q 010317 57 YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGA-LAMGLAPNYPFLIVGRMIAGIGVG 135 (513)
Q Consensus 57 ~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~-~~~~~~~~~~~l~~~R~l~G~~~g 135 (513)
..++.+|+|+.+.+.+.|..+...++.++++|.++||+||+.+...+..+..+.+ ....|+ +..=..+-.+.|+.-.
T Consensus 290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsys 367 (459)
T KOG4686|consen 290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYS 367 (459)
T ss_pred HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHH
Confidence 4789999999999999999999999999999999999999988877766555443 333332 2222223345565543
Q ss_pred cccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcC
Q 010317 136 YSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSG 181 (513)
Q Consensus 136 ~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~ 181 (513)
.......-.++-+.|.++-|.+.++.+...++|..+.++++..+..
T Consensus 368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d 413 (459)
T KOG4686|consen 368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIAD 413 (459)
T ss_pred HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeec
Confidence 3332233456667788899999999999999998888877655543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.3e-05 Score=79.36 Aligned_cols=111 Identities=11% Similarity=0.093 Sum_probs=80.0
Q ss_pred CchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHh-----cCcHHHHHHHHHHhhhhcccccc
Q 010317 65 TEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGL-----APNYPFLIVGRMIAGIGVGYSLM 139 (513)
Q Consensus 65 s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~-----~~~~~~l~~~R~l~G~~~g~~~~ 139 (513)
+....+++.++..++..++.+++++++||+|||+.+.++..+..++.+...+ ..+.+.+++.-++.|++.+....
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777667888999999999999999999999888877766554432 34566677777888999888888
Q ss_pred cccceeeccCC-------CcccccccchhhHHHHHHHHHHHHH
Q 010317 140 ISPVYTAEISP-------TMKRGFLTSLPEVFIVLGILSGYVF 175 (513)
Q Consensus 140 ~~~~~~~e~~p-------~~~R~~~~~~~~~~~~~G~~~~~~~ 175 (513)
....+++|..+ .++.|...+......-+|..++..+
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i 386 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFF 386 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 88888998855 2223446666666555665555443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.2e-05 Score=81.76 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=90.4
Q ss_pred HHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccce
Q 010317 330 INVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPI 409 (513)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (513)
...+..++..+|.++.|.++||+|||++++++.....++.+..+.. +.... ++..=++.+++..+...+
T Consensus 123 ~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a--------~~~~~---~~~~Rfl~G~~~~~~~~~ 191 (521)
T KOG0255|consen 123 GQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA--------PNYWM---FLIFRFLSGFFGSGPLTV 191 (521)
T ss_pred HHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh--------CcHHH---HHHHHHHHHhhccchhHH
Confidence 4455666788899999999999999999998876655555443321 11221 122222334455555567
Q ss_pred eeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhheecccCC
Q 010317 410 TWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETK 480 (513)
Q Consensus 410 ~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 480 (513)
.+.+.+|.++++.|+.+..+ ....+.++...+.....+.. ++++.+++.....++..++ +++.||+.
T Consensus 192 ~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~ 258 (521)
T KOG0255|consen 192 GFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP 258 (521)
T ss_pred hHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence 78899999999999999999 66666655555544444444 6677788777777666554 45566764
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.5e-05 Score=81.24 Aligned_cols=108 Identities=12% Similarity=0.073 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHhhhhcccccccccceee
Q 010317 69 VEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGL--APNYPFLIVGRMIAGIGVGYSLMISPVYTA 146 (513)
Q Consensus 69 ~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~--~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~ 146 (513)
.+.+.....+...++.+++++++||+|||+.+.++.++..+......+ ..+.+.+++..++.|++.+...+....+++
T Consensus 266 ~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~a 345 (444)
T PRK09669 266 ATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFS 345 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777889999999999999999999888776654443333 346677788889999999998888888888
Q ss_pred ccCCC-------cccccccchhhHHHHHHHHHHHHHH
Q 010317 147 EISPT-------MKRGFLTSLPEVFIVLGILSGYVFN 176 (513)
Q Consensus 147 e~~p~-------~~R~~~~~~~~~~~~~G~~~~~~~~ 176 (513)
|..+. +..|...+....+..+|..+++.+.
T Consensus 346 d~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~ 382 (444)
T PRK09669 346 DVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVV 382 (444)
T ss_pred hhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 88752 2234455666556666766665443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.4e-06 Score=80.06 Aligned_cols=169 Identities=11% Similarity=0.076 Sum_probs=114.9
Q ss_pred HHHHHHHHHHhhcccccchhhHHHHhhh---CCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHH
Q 010317 35 LLASINSILLGYDIGVMSGAVLYIKEDL---EITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGA 111 (513)
Q Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~ 111 (513)
.+.......+.+|.+ .+. +...-+ +.++...|.+.+.-.+.=++.-.+..++.+|+|.|+.++++..+.++=.
T Consensus 228 ~v~g~~~~Y~vfdqq-f~~---y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi 303 (412)
T PF01306_consen 228 FVIGVAAIYDVFDQQ-FPI---YFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRI 303 (412)
T ss_dssp HHHHHHHHHHHHHHH-HHH---HHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHH---HHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHH
Confidence 344444555666653 111 222222 2234457888888888888899999999999999999999999999999
Q ss_pred HHHHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchh-hHHHHHHHHHHHHHHHHhcCCCCCcchHH
Q 010317 112 LAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLP-EVFIVLGILSGYVFNYALSGLPGNINWRI 190 (513)
Q Consensus 112 ~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~-~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~ 190 (513)
++++++++.+.+.+.+.+.|+..+.......-|+++.+|++..+....+. +....+|..+...++..+ .++.|.+.
T Consensus 304 ~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~l---yd~~G~~~ 380 (412)
T PF01306_consen 304 IGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYL---YDRIGFQH 380 (412)
T ss_dssp HHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhh---HhhcCcHH
Confidence 99999999999999999999999999999999999999998776655543 334445544433332222 23557887
Q ss_pred HHHhhhHHHHHHHH-HHhccC
Q 010317 191 MLGLAAVPAAVIGV-GVLIMP 210 (513)
Q Consensus 191 ~~~~~~~~~~i~~~-~~~~lp 210 (513)
.|++.+...+...+ ..+.++
T Consensus 381 tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 381 TYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHheeeec
Confidence 77776665544444 344443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.9e-05 Score=79.67 Aligned_cols=180 Identities=17% Similarity=0.091 Sum_probs=102.2
Q ss_pred chHHHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHH
Q 010317 27 NKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAAT 106 (513)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~ 106 (513)
.+......++......+.|++.. ..-.+.+-+..+.++.. .+...+..+...++.+++..+.||+|||+.++.+...
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~~~--~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~ 368 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGINYV--FYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAG 368 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCceE--EeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHH
Confidence 33344444444555555665432 22223455566655443 5555556677778888889999999999999999999
Q ss_pred HHHHHHHHHhcCcH-------------HHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHH-HHHH
Q 010317 107 FLVGALAMGLAPNY-------------PFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLG-ILSG 172 (513)
Q Consensus 107 ~~i~~~~~~~~~~~-------------~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G-~~~~ 172 (513)
+.++.++.+..... ..+...-+.......+..++...+.+|.+|.+.|+...++........ ..+.
T Consensus 369 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~ 448 (513)
T KOG0254|consen 369 MSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLIS 448 (513)
T ss_pred HHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHH
Confidence 99998877743111 112222222222222233444468899999999999988765543333 2222
Q ss_pred HHHHHHhcCCCCCcchHHHHHhhhH-HHHHHH-HHHhccCCCc
Q 010317 173 YVFNYALSGLPGNINWRIMLGLAAV-PAAVIG-VGVLIMPESP 213 (513)
Q Consensus 173 ~~~~~~~~~~~~~~~Wr~~~~~~~~-~~~i~~-~~~~~lpEsp 213 (513)
......... .++...|...+. ..+... ...+++||+.
T Consensus 449 ~~~~~~~~~----~~~~~~f~~f~~~~~~~~~~fv~~~~pETk 487 (513)
T KOG0254|consen 449 FFFPFITEA----LGIGGTFGYFGGICLLSLIIFVFFFVPETK 487 (513)
T ss_pred HHHHHHHHh----ccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence 222222211 113334444333 333333 4567899995
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0001 Score=76.21 Aligned_cols=158 Identities=9% Similarity=0.016 Sum_probs=87.7
Q ss_pred hhhccchhhhccHHHHHH-hCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhc-cCChhHHHhhhHHHHHHHHHHHHHhh
Q 010317 300 MQASGNDAVIYYTPAVFK-GAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDK-FGRRPLLLLGSSGMVGSLLLLGIGSK 377 (513)
Q Consensus 300 ~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~grr~~~~~~~~~~~~~~~~~~~~~~ 377 (513)
+...+++....++|.++. +.+.+...... .............+++|++.|| +|||+.++.+.+...++..+++..
T Consensus 32 ~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~-~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~-- 108 (500)
T PRK09584 32 WERFGYYGLQGIMAVYLVKQLGMSEADSIT-LFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS-- 108 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh--
Confidence 344455666777787774 44443332222 1112222223334578999999 599999888766555444433321
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChh--hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010317 378 ILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLR--LRAQGSALAISVNRLVSGVISMTFLSISHRLSFG 455 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~--~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (513)
. ............. +.......+....+.+|.||++ .|..+.++.+...++++.+.+.....+.+..++.
T Consensus 109 ---~-~~~~~l~~~~~l~----gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~ 180 (500)
T PRK09584 109 ---G-HDAGIVYMGMATI----AVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWS 180 (500)
T ss_pred ---c-ccHHHHHHHHHHH----HHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHH
Confidence 0 1111111111111 1111112234446778999864 3445677777888887777777777777777888
Q ss_pred hhHHHHHHHHHHH
Q 010317 456 GTFFLLAGITTVG 468 (513)
Q Consensus 456 ~~~~~~~~~~~~~ 468 (513)
+.|.+.++...++
T Consensus 181 ~~F~i~~i~~~i~ 193 (500)
T PRK09584 181 VAFALSVVGMLIT 193 (500)
T ss_pred HHHHHHHHHHHHH
Confidence 8887766544443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0004 Score=73.28 Aligned_cols=152 Identities=16% Similarity=0.221 Sum_probs=107.7
Q ss_pred hHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhcccccc-ccCchHHHHHHHHHHHHHHHHHHhcCc--------HHHHHH
Q 010317 55 VLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSD-YIGRRYTIVVAAATFLVGALAMGLAPN--------YPFLIV 125 (513)
Q Consensus 55 ~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d-r~GRr~~~~~~~~~~~i~~~~~~~~~~--------~~~l~~ 125 (513)
..++.+.+|.++++...+...+....-+..+++|+++| ++||++++.++.++..++..+.++... ....++
T Consensus 11 vlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~ 90 (654)
T TIGR00926 11 VLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLL 90 (654)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHH
Confidence 34667778999888888888888888889999999999 579999999999999999877776421 123556
Q ss_pred HHHHhhhhcccccccccceeeccCCCcccccccchhh---HHHHHHHHHHHHHHHHhcC-C---CCCcchHHHHHhhhHH
Q 010317 126 GRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPE---VFIVLGILSGYVFNYALSG-L---PGNINWRIMLGLAAVP 198 (513)
Q Consensus 126 ~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~---~~~~~G~~~~~~~~~~~~~-~---~~~~~Wr~~~~~~~~~ 198 (513)
+-.+..+|.|+.-+...+...|-++++++.+..++++ .+.++|.+++..+...+.. . ..+.+|...|.+.++.
T Consensus 91 gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~ 170 (654)
T TIGR00926 91 GLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAIL 170 (654)
T ss_pred HHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHH
Confidence 6777788889888888888888887654443344444 4455666655444333321 1 1234799988887776
Q ss_pred HHHHHHHH
Q 010317 199 AAVIGVGV 206 (513)
Q Consensus 199 ~~i~~~~~ 206 (513)
.++..+.+
T Consensus 171 m~ia~lvf 178 (654)
T TIGR00926 171 MILALIVF 178 (654)
T ss_pred HHHHHHHH
Confidence 66555543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.4e-07 Score=96.42 Aligned_cols=152 Identities=21% Similarity=0.173 Sum_probs=88.3
Q ss_pred HHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHH----hcCc------HHHHHH
Q 010317 56 LYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMG----LAPN------YPFLIV 125 (513)
Q Consensus 56 ~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~----~~~~------~~~l~~ 125 (513)
+.+.++.+.++. -..+....+...++.++...+.||+|||+.++.+..+.+++....+ ...+ ...+..
T Consensus 277 ~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 354 (451)
T PF00083_consen 277 PSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVF 354 (451)
T ss_pred cccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence 455666666655 2223334455667788888999999999999999998888876664 1122 112111
Q ss_pred HHHHhhhhcc-cccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcc-hHHHHHhhhHHHHHHH
Q 010317 126 GRMIAGIGVG-YSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNIN-WRIMLGLAAVPAAVIG 203 (513)
Q Consensus 126 ~R~l~G~~~g-~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-Wr~~~~~~~~~~~i~~ 203 (513)
.. +...+.+ +..+....+.+|.+|++.|+...++......++..+++.+... .....+ +.......++..+..+
T Consensus 355 ~~-l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~---~~~~~~~~~~~~i~~~~~~i~~i 430 (451)
T PF00083_consen 355 LA-LFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPY---LFNNLGGWGVFLIFAGVCLIAII 430 (451)
T ss_pred ee-ecccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccchhhHHHHHHHHh
Confidence 11 1111122 2234555788999999999999998665544444443332211 112222 3333333333344444
Q ss_pred HHHhccCCCc
Q 010317 204 VGVLIMPESP 213 (513)
Q Consensus 204 ~~~~~lpEsp 213 (513)
+.++++|||.
T Consensus 431 ~~~~~lpET~ 440 (451)
T PF00083_consen 431 FVYFFLPETK 440 (451)
T ss_pred heeEEEeeCC
Confidence 5578899996
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00019 Score=71.62 Aligned_cols=149 Identities=22% Similarity=0.286 Sum_probs=106.2
Q ss_pred HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhc-CcHHHHH----HHHHHhh
Q 010317 57 YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLA-PNYPFLI----VGRMIAG 131 (513)
Q Consensus 57 ~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~-~~~~~l~----~~R~l~G 131 (513)
++++.-+.+....+...++-.+.=.+.-+..+++..|+|-|+++.++.+.+++=..+.+.. ++.+... ..-.++|
T Consensus 233 yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG 312 (400)
T PF03825_consen 233 YLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHG 312 (400)
T ss_pred HHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhh
Confidence 4444443666666665555555566777788999999999999999999999888888877 4544333 3345699
Q ss_pred hhcccccccccceeeccCCCcccccccchhhHH-HHHHHHHHHHHHHHhc-CCC--CCcchHHHHHhhhHHHHHHHHH
Q 010317 132 IGVGYSLMISPVYTAEISPTMKRGFLTSLPEVF-IVLGILSGYVFNYALS-GLP--GNINWRIMLGLAAVPAAVIGVG 205 (513)
Q Consensus 132 ~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~-~~~G~~~~~~~~~~~~-~~~--~~~~Wr~~~~~~~~~~~i~~~~ 205 (513)
+..|.....+..|+.|..|++.|+++.+++... ..+|..++..++..+- ... ....|...+.+.+...++..+.
T Consensus 313 ~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~ 390 (400)
T PF03825_consen 313 LTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVL 390 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998764 5788888776655443 211 1234666666655554444443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00063 Score=67.84 Aligned_cols=115 Identities=20% Similarity=0.241 Sum_probs=88.1
Q ss_pred HHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHhhhhcc
Q 010317 58 IKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAP--NYPFLIVGRMIAGIGVG 135 (513)
Q Consensus 58 ~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~R~l~G~~~g 135 (513)
.+..+|-++....+.......+..++.+++.++++|+|+|+++.++.+++.++..+.-+.+ +....++..++.+++.+
T Consensus 263 ~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~ 342 (467)
T COG2211 263 VTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTG 342 (467)
T ss_pred EEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhh
Confidence 3444565666666777778888888899999999999999999999999999999888876 67888899999999999
Q ss_pred cccccccceeeccCCC-------cccccccchhhHHHHHHHHHH
Q 010317 136 YSLMISPVYTAEISPT-------MKRGFLTSLPEVFIVLGILSG 172 (513)
Q Consensus 136 ~~~~~~~~~~~e~~p~-------~~R~~~~~~~~~~~~~G~~~~ 172 (513)
...+...+.++|..+- +.-|...+....+.=+|..++
T Consensus 343 ~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala 386 (467)
T COG2211 343 IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALA 386 (467)
T ss_pred ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHH
Confidence 9999998888876532 222444444444444554444
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00024 Score=65.26 Aligned_cols=145 Identities=15% Similarity=0.154 Sum_probs=82.8
Q ss_pred HhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhc
Q 010317 299 FMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKI 378 (513)
Q Consensus 299 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 378 (513)
.......|.+..|+|.+-+..+.+... ...+.....++..+ ++..|.+.|+.|.|.++.+|.+.......++.....-
T Consensus 12 ~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~-l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~ 89 (250)
T PF06813_consen 12 QLCSGTTYTFSAYSPQLKSRLGYSQSQ-LNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG 89 (250)
T ss_pred HHhcCcccchhhhhHHHHHHhCCCHHH-HHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334445677888999887766654433 33355555566555 4788999999999999888776555444433322211
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010317 379 LEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISH 450 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 450 (513)
... ..+.+..............+ .......-..+-||. .||++.|+.-+...+.+.+.+..+.....
T Consensus 90 ~i~-~~~~~~~~~~~~l~~~s~~~---~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 90 RIP-SLPVWLMCLFLFLGGNSSCW---FNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred ccC-ccchHHHHHHHHHHcccHHH---hhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 111 11222221111111111111 001112334478996 59999999999988888887766544443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.7e-05 Score=79.55 Aligned_cols=128 Identities=9% Similarity=0.049 Sum_probs=75.1
Q ss_pred cHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccC----------
Q 010317 311 YTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILE---------- 380 (513)
Q Consensus 311 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~---------- 380 (513)
-+|.+-+..+.+..... .+.....++..++.++.+++.||.|||+.+.++.+.+.+..++.++...+..
T Consensus 55 ~l~~iek~F~lss~~~G-~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~ 133 (633)
T TIGR00805 55 SLTTIERRFKLSTSSSG-LINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSS 133 (633)
T ss_pred hchhhhhhhCCCCCcce-eeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccc
Confidence 34455455554443322 2334455667778888999999999999988887776666665554321000
Q ss_pred --------------C----------------CCc-hhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHH
Q 010317 381 --------------G----------------STP-TVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSAL 429 (513)
Q Consensus 381 --------------~----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~ 429 (513)
. ... .. ....++..-+..+.......+....|+.|.+|++.|+...|+
T Consensus 134 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i 212 (633)
T TIGR00805 134 TGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESL-MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGI 212 (633)
T ss_pred cccccccccccccCCCCCCccccccccccccccCCCc-eehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHH
Confidence 0 000 00 111122222223333333445667899999999999999999
Q ss_pred HHHHHHHHHHH
Q 010317 430 AISVNRLVSGV 440 (513)
Q Consensus 430 ~~~~~~~~~~~ 440 (513)
......++..+
T Consensus 213 ~~~~~~iG~~l 223 (633)
T TIGR00805 213 LESIAVFGPAF 223 (633)
T ss_pred HHHHHHhhhHH
Confidence 88776664433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.6e-05 Score=63.53 Aligned_cols=113 Identities=15% Similarity=0.173 Sum_probs=92.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcccccccccc
Q 010317 64 ITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPV 143 (513)
Q Consensus 64 ~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~ 143 (513)
+++..--...++.+....+..++.+.+.+++|.|+.++++.+++.+..... +-++.+.++.+-.+.|++.+..+.....
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 344344456777888889999999999999999999999999998765544 5677888999999999999999999999
Q ss_pred eeeccCCCcccccccchhhHHHHHHHHHHHHHHH
Q 010317 144 YTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNY 177 (513)
Q Consensus 144 ~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~ 177 (513)
|+.+...++.|++..+++-.....+.+.|.+..+
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888766666666666655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.89 E-value=3e-05 Score=79.34 Aligned_cols=153 Identities=16% Similarity=0.048 Sum_probs=114.6
Q ss_pred HhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHh----------cCcHHHHHHHHH
Q 010317 59 KEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGL----------APNYPFLIVGRM 128 (513)
Q Consensus 59 ~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~----------~~~~~~l~~~R~ 128 (513)
+.++|.++.+.|...+...++..+|....+++.+|++.|+++.++.++..++...... .++...++..-+
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~ 359 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI 359 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence 4578999999999999999999999999999999999999999999999988755431 133334555667
Q ss_pred HhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcC----CCCCcchHHHHHh-hhHHHHHHH
Q 010317 129 IAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSG----LPGNINWRIMLGL-AAVPAAVIG 203 (513)
Q Consensus 129 l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~----~~~~~~Wr~~~~~-~~~~~~i~~ 203 (513)
+.+++.+........++.+..|++.+|...++.....++|..++..++..+.. ..++...+|...+ ..++.++..
T Consensus 360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l 439 (468)
T TIGR00788 360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPL 439 (468)
T ss_pred HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHH
Confidence 78888888888888999999999999999999998888888888776554432 1223344444333 333344443
Q ss_pred HHHhccCC
Q 010317 204 VGVLIMPE 211 (513)
Q Consensus 204 ~~~~~lpE 211 (513)
...+++|+
T Consensus 440 ~~~~llP~ 447 (468)
T TIGR00788 440 PLLHLLPR 447 (468)
T ss_pred HHHHhCCC
Confidence 44457786
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00066 Score=67.64 Aligned_cols=157 Identities=18% Similarity=0.100 Sum_probs=91.4
Q ss_pred hhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhH
Q 010317 308 VIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVV 387 (513)
Q Consensus 308 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (513)
..+-.|.+.++.+.+.......+......+..+..+.++++.||+|-|+++.++.+...+..++.++... ...
T Consensus 45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S-------l~~ 117 (511)
T TIGR00806 45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS-------VWH 117 (511)
T ss_pred HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 3345566666666655442233445556678888899999999999999998877665555555554211 011
Q ss_pred HHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHH---HHHHH
Q 010317 388 VVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFF---LLAGI 464 (513)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 464 (513)
..+.-+.. +.+..+.. ..+.|+..-+|++.|+++.|+.++...++..+.+.+... ....++..... +-.+.
T Consensus 118 L~i~R~ll----GvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s 191 (511)
T TIGR00806 118 MQLMEVFY----SVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVF 191 (511)
T ss_pred HHHHHHHH----HHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Confidence 11111111 11111111 345677899999999999999999888877666665554 33344443322 22223
Q ss_pred HHHHHHhhheeccc
Q 010317 465 TTVGTIFFYVFLPE 478 (513)
Q Consensus 465 ~~~~~~~~~~~~pe 478 (513)
.++ ++++.+++|.
T Consensus 192 ~~~-a~~~a~~LP~ 204 (511)
T TIGR00806 192 MTF-SVFLALFLKR 204 (511)
T ss_pred HHH-HHHHHHhCCC
Confidence 333 3334566673
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00042 Score=70.88 Aligned_cols=84 Identities=19% Similarity=0.082 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHhhhhcccccccccce
Q 010317 67 VQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNY--PFLIVGRMIAGIGVGYSLMISPVY 144 (513)
Q Consensus 67 ~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~R~l~G~~~g~~~~~~~~~ 144 (513)
...++..+.+.++..+|.+++++++||+|+|+.+..+..+..+...+..+.++. ..+.+.-++.|++.+...+....+
T Consensus 263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m 342 (460)
T PRK11462 263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVM 342 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888889999999999999999999876665555544444343332 233444456677666655555556
Q ss_pred eeccCC
Q 010317 145 TAEISP 150 (513)
Q Consensus 145 ~~e~~p 150 (513)
++|..+
T Consensus 343 ~ad~~d 348 (460)
T PRK11462 343 MSDTVD 348 (460)
T ss_pred HHHhHh
Confidence 666544
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.53 E-value=7.4e-05 Score=71.43 Aligned_cols=156 Identities=15% Similarity=0.125 Sum_probs=109.7
Q ss_pred hcccccchhhHH-HHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccC--chHHHHHHHHHHHHHHHHHHhcCcHHH
Q 010317 46 YDIGVMSGAVLY-IKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIG--RRYTIVVAAATFLVGALAMGLAPNYPF 122 (513)
Q Consensus 46 ~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~G--Rr~~~~~~~~~~~i~~~~~~~~~~~~~ 122 (513)
...+.+-++++. +.+.+..+.-+.|+..--..+.+.+|..++|.++||+| |-..-..++++..+++...-++.++.+
T Consensus 284 ~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~ 363 (464)
T KOG3764|consen 284 SSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQ 363 (464)
T ss_pred chHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHH
Confidence 344555566665 55667734337776666667899999999999999999 766666777777777778889999999
Q ss_pred HHHHHHHhhhhccccccccc---ceeeccCCCc---ccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhh
Q 010317 123 LIVGRMIAGIGVGYSLMISP---VYTAEISPTM---KRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAA 196 (513)
Q Consensus 123 l~~~R~l~G~~~g~~~~~~~---~~~~e~~p~~---~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~ 196 (513)
+.+-++..|++.+....... .+.-|....+ .-|...++.+..+.+|..+|+.++..+ ....|.+|...+.+
T Consensus 364 L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~i---v~~iGF~wl~~iig 440 (464)
T KOG3764|consen 364 LWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSL---VEAIGFEWLMTIIG 440 (464)
T ss_pred HhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchh---eeehhHHHHHHHHH
Confidence 99999988888766443322 3333333333 557777788888888888888775433 34678888877766
Q ss_pred HHHHHHHH
Q 010317 197 VPAAVIGV 204 (513)
Q Consensus 197 ~~~~i~~~ 204 (513)
+..++...
T Consensus 441 ~~n~iyap 448 (464)
T KOG3764|consen 441 ILNLIYAP 448 (464)
T ss_pred HHHHHHHH
Confidence 66555443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0037 Score=63.19 Aligned_cols=139 Identities=18% Similarity=0.167 Sum_probs=93.1
Q ss_pred HhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeee
Q 010317 334 MGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVY 413 (513)
Q Consensus 334 ~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (513)
.++..++.+...|.++||+|||..+......+.+..+...+.. ++.....-....+... .+..+.|
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~---------~~~~~~~~l~g~~~~~-----~s~~~a~ 136 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG---------YWFFLLLGLSGGFSAI-----FSVGFAY 136 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH---------HHHhhhcccccchhhh-----hhhhhhh
Confidence 4566677788899999999999998876655554444433221 1111100000111111 1234678
Q ss_pred ecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhheecccCCCCCHHH
Q 010317 414 SSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLEE 486 (513)
Q Consensus 414 ~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~e 486 (513)
.++....+.|....|+.+..-..+..+++..-....+..+....|.+..+...+..++..+.+||+..++.++
T Consensus 137 vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~ 209 (463)
T KOG2816|consen 137 VADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS 209 (463)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence 8999999999999999988666655555555555556667777888888888889899899999998776543
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00041 Score=70.24 Aligned_cols=147 Identities=17% Similarity=0.149 Sum_probs=92.2
Q ss_pred HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCc---------hHHHHHHHHHHHHHHHHHHhcCcH---H---
Q 010317 57 YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGR---------RYTIVVAAATFLVGALAMGLAPNY---P--- 121 (513)
Q Consensus 57 ~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GR---------r~~~~~~~~~~~i~~~~~~~~~~~---~--- 121 (513)
|+.+-+|.+-.+.|++.++.++...+..+++|.++||.-+ |..-.++..+.+++-+..++.++- .
T Consensus 284 Y~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~ 363 (466)
T KOG2532|consen 284 YLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVI 363 (466)
T ss_pred HHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHH
Confidence 6788899999999999999999999999999999998855 333344444555555555555531 1
Q ss_pred HHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHH
Q 010317 122 FLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAV 201 (513)
Q Consensus 122 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i 201 (513)
.+.++-.+.|+..++.+.. ..+. .+++-+..+++.+....+..++++.+...+........||++|++.++..++
T Consensus 364 ~l~~~~~~~g~~~~Gf~~~----~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~ 438 (466)
T KOG2532|consen 364 LLTIAIGLSGFNISGFYKN----HQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIV 438 (466)
T ss_pred HHHHHHHHcccchhhhHhh----hhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHH
Confidence 1222223333333332221 1221 4566777787777666666666655533333211345899999998877766
Q ss_pred HHHHHhc
Q 010317 202 IGVGVLI 208 (513)
Q Consensus 202 ~~~~~~~ 208 (513)
..+.+.+
T Consensus 439 ~~i~f~~ 445 (466)
T KOG2532|consen 439 GNIIFLF 445 (466)
T ss_pred hchheeE
Confidence 6554433
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0024 Score=62.50 Aligned_cols=119 Identities=17% Similarity=0.190 Sum_probs=78.8
Q ss_pred HHhhhCCCchhHHHHHHHHHHHHHHHHhhcccccc----ccCchHHHHHHHHHH-HHHHHHHHhcCcHH-----------
Q 010317 58 IKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSD----YIGRRYTIVVAAATF-LVGALAMGLAPNYP----------- 121 (513)
Q Consensus 58 ~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d----r~GRr~~~~~~~~~~-~i~~~~~~~~~~~~----------- 121 (513)
....+|++....+.+--+--+...+-+++.|..+| ||||||-++...... +++.++..++.+..
T Consensus 58 yl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~ 137 (498)
T KOG0637|consen 58 YLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPV 137 (498)
T ss_pred HHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCccccc
Confidence 34567777776665555555666677888899999 589988877665544 44455556654432
Q ss_pred -HHHHHHHHhh-----hhcccccccccceeeccCCCccccc-ccchhhHHHHHHHHHHHHHH
Q 010317 122 -FLIVGRMIAG-----IGVGYSLMISPVYTAEISPTMKRGF-LTSLPEVFIVLGILSGYVFN 176 (513)
Q Consensus 122 -~l~~~R~l~G-----~~~g~~~~~~~~~~~e~~p~~~R~~-~~~~~~~~~~~G~~~~~~~~ 176 (513)
...+.-++.| ++.-......-++..|....+++.+ +.+.+..+.++|..+|+.++
T Consensus 138 ~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g 199 (498)
T KOG0637|consen 138 KPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALG 199 (498)
T ss_pred chHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecc
Confidence 1223333334 3343445556678899877776666 88898899999998888765
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0012 Score=61.98 Aligned_cols=164 Identities=15% Similarity=0.148 Sum_probs=114.6
Q ss_pred hhhHHHH-hhhCCCchhHH-HHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 010317 53 GAVLYIK-EDLEITEVQVE-VLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIA 130 (513)
Q Consensus 53 ~~~~~~~-~~~~~s~~~~~-~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~ 130 (513)
...|++. .|-|+|..+.. -+.-+..-.+.++-++.-.+.|-.-=|++++.-.+-......+.-+.++...+=+.-++.
T Consensus 26 ~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~Fy 105 (433)
T KOG3810|consen 26 YLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFY 105 (433)
T ss_pred ccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhc
Confidence 3445554 56678777653 233444556667777888899988889998888888888888888999999988899999
Q ss_pred hhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHhccC
Q 010317 131 GIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIMP 210 (513)
Q Consensus 131 G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~~lp 210 (513)
|...+... ..++|+-+..+++++.++++..-.....|...+.+++-.+... ...+...+-.+.-....+.....+++|
T Consensus 106 G~~tAaEI-AYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~-~~~sy~~LN~ISL~~~~ia~~~A~fLP 183 (433)
T KOG3810|consen 106 GPATAAEI-AYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSL-ETLSYTTLNYISLAEVTIAVLLALFLP 183 (433)
T ss_pred ChHHHHHH-hhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhh-cccchhhhchhhHHHHHHHHHHHhhCC
Confidence 98776653 4568888999999999999888777777877777776554422 123444444444444444555567777
Q ss_pred CCchhHHh
Q 010317 211 ESPRWLVM 218 (513)
Q Consensus 211 Esp~~l~~ 218 (513)
..+|-+..
T Consensus 184 ~v~rSl~f 191 (433)
T KOG3810|consen 184 RVKRSLYF 191 (433)
T ss_pred CCchhhhh
Confidence 66654443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00039 Score=51.12 Aligned_cols=55 Identities=16% Similarity=0.249 Sum_probs=47.1
Q ss_pred hhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHH
Q 010317 53 GAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATF 107 (513)
Q Consensus 53 ~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~ 107 (513)
|-.|...++.|++..|.|.+.++..+...++++++|.++||+||++..+.....+
T Consensus 21 Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 21 PFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred hhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 4444556678999999999999999999999999999999999998887766554
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.11 Score=52.15 Aligned_cols=123 Identities=14% Similarity=-0.019 Sum_probs=67.6
Q ss_pred HHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCC-chhHHHHHH
Q 010317 314 AVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGST-PTVVVVLCI 392 (513)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 392 (513)
.++...|.+... ....-....+.+..++++.+++.+|+|..+.-..+......+..+.... ......+ ........+
T Consensus 283 ~yl~~~G~s~~~-igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~-~~~~~~~~~~~s~~~l~ 360 (432)
T PF06963_consen 283 AYLKSQGYSPSV-IGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVS-FWAPGSPFSSISAYLLL 360 (432)
T ss_pred HHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHH-HhcCCCCchhhHHHHHH
Confidence 344455544322 2223344667788889999999999998877666665555444333322 2222222 112211111
Q ss_pred HHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHH
Q 010317 393 IAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSG 439 (513)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~ 439 (513)
.+. ...-..-.+.=-....+.+|..|.+.|+...|.-+++.++...
T Consensus 361 ~gi-~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~l 406 (432)
T PF06963_consen 361 GGI-ALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFEL 406 (432)
T ss_pred HHH-HHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHH
Confidence 111 1111111111112245678999999999999999999887653
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.27 Score=51.37 Aligned_cols=153 Identities=18% Similarity=0.195 Sum_probs=102.2
Q ss_pred cchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhcccccccc-CchHHHHHHHHHHHHHHHHHHhc-------C----
Q 010317 51 MSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYI-GRRYTIVVAAATFLVGALAMGLA-------P---- 118 (513)
Q Consensus 51 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~-GRr~~~~~~~~~~~i~~~~~~~~-------~---- 118 (513)
.++...++..++|.+.....-..+.+.-......+..++++|-| ||-+++.++.++..++..+..++ +
T Consensus 57 ~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~ 136 (571)
T KOG1237|consen 57 VSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCK 136 (571)
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Confidence 45667789999998887777777777777778889999999955 99999999999888875433221 1
Q ss_pred ---------c-----HHHHHHHHHHhhhhcccccccccceeeccCC---Ccccccccch---hhHHHHHHHHHHHHHHHH
Q 010317 119 ---------N-----YPFLIVGRMIAGIGVGYSLMISPVYTAEISP---TMKRGFLTSL---PEVFIVLGILSGYVFNYA 178 (513)
Q Consensus 119 ---------~-----~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p---~~~R~~~~~~---~~~~~~~G~~~~~~~~~~ 178 (513)
. ...+..+.-+..+|.|+.-+....+-+|=++ ++++.....+ +.....+|.+++......
T Consensus 137 ~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vy 216 (571)
T KOG1237|consen 137 FKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVY 216 (571)
T ss_pred CCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 0 1245566667777888888888888888777 3333332233 333445565555444333
Q ss_pred hcCCCCCcchHHHHHhhhHHHHHHHHHH
Q 010317 179 LSGLPGNINWRIMLGLAAVPAAVIGVGV 206 (513)
Q Consensus 179 ~~~~~~~~~Wr~~~~~~~~~~~i~~~~~ 206 (513)
.. .+.+|.+-|.+..+...+.++.+
T Consensus 217 iq---~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 217 IQ---DNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred hh---hcccceeeccHHHHHHHHHHHHH
Confidence 22 45689988887666655544443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=8.1e-05 Score=73.88 Aligned_cols=145 Identities=16% Similarity=0.071 Sum_probs=117.6
Q ss_pred HhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhccccc
Q 010317 59 KEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSL 138 (513)
Q Consensus 59 ~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~ 138 (513)
.+|.+-.+.-.|........|=.+.-++++.+.+|+|+-+++.+++.+.++=-+...+.+|.|+.+-.-+++|+..+..+
T Consensus 398 led~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliW 477 (618)
T KOG3762|consen 398 LEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIW 477 (618)
T ss_pred HhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHH
Confidence 45666666667777777788888888899999999999999999999999998999999999999999999999999999
Q ss_pred ccccceeeccCCCcccccccchhhH-HHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHH
Q 010317 139 MISPVYTAEISPTMKRGFLTSLPEV-FIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGV 206 (513)
Q Consensus 139 ~~~~~~~~e~~p~~~R~~~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~ 206 (513)
.....|++...|++.|..+.++.+. +..+|--.|.+++..+. ...+=|..|.+.++.+++..+.+
T Consensus 478 aa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v---~~fg~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 478 AAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVV---ERFGARTTFRIFGIACLVTLALF 543 (618)
T ss_pred HHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhh---eeehhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764 35666666666654433 24566777777776655544433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0033 Score=59.88 Aligned_cols=145 Identities=18% Similarity=0.185 Sum_probs=102.2
Q ss_pred hHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhcccccccc-CchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhh
Q 010317 55 VLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYI-GRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIG 133 (513)
Q Consensus 55 ~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~-GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~ 133 (513)
+|.+-.|-|+|..+.|+..+...+.....++....+++|. -+|+.......++.++.....+.+.-..+.. -++.|+|
T Consensus 231 LP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G 309 (395)
T COG2807 231 LPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLG 309 (395)
T ss_pred HHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCc
Confidence 4778888999999999999999999999999999999965 4777778888888888777778776655555 4899999
Q ss_pred cccccccccceeeccCCCcc-cccccchhhHHHHHHHHHHHHHHHHhcCCCC-CcchHHHHHhhhHHHHHHH
Q 010317 134 VGYSLMISPVYTAEISPTMK-RGFLTSLPEVFIVLGILSGYVFNYALSGLPG-NINWRIMLGLAAVPAAVIG 203 (513)
Q Consensus 134 ~g~~~~~~~~~~~e~~p~~~-R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~~~Wr~~~~~~~~~~~i~~ 203 (513)
.|...+.....+..-.+..+ -+..+++ ...+|.+++..-.+..+.+++ ..+|+...+......++..
T Consensus 310 ~G~~F~laL~li~~rs~~a~~Aa~LSgm---aQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~ 378 (395)
T COG2807 310 QGGAFPLALTLILLRSSDAAIAAALSGM---AQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLML 378 (395)
T ss_pred cchHHHHHHHHHHhhcCChHHHHHHHHH---hhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHH
Confidence 99999888877766544333 3344444 445565555443333332222 2379887766555544433
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0022 Score=63.98 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=56.1
Q ss_pred ccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHH-HHHHHHHHHHHHHHHHhcC
Q 010317 48 IGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYT-IVVAAATFLVGALAMGLAP 118 (513)
Q Consensus 48 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~-~~~~~~~~~i~~~~~~~~~ 118 (513)
.+.+-+..+..-+.+|+++.+.|.+..+.-+..+++.+++|+++|||-+|+- ++.+.+.+..++++..+++
T Consensus 27 ~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv~ 98 (618)
T KOG3762|consen 27 FGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFVP 98 (618)
T ss_pred ccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeecc
Confidence 3444555566778999999999999999999999999999999999986554 5555666666677666653
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0053 Score=59.38 Aligned_cols=133 Identities=16% Similarity=0.077 Sum_probs=99.1
Q ss_pred HhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHH
Q 010317 44 LGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFL 123 (513)
Q Consensus 44 ~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l 123 (513)
.|.+...-+....++.+..|+++.+.....+.+..+.++|-+++.++..|+-..+.+....++..+..+..+++++...+
T Consensus 249 VG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~ 328 (422)
T COG0738 249 VGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVAL 328 (422)
T ss_pred HhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 34555555555556666689999999999999999999999999999999999999999999999999999999996655
Q ss_pred HHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 010317 124 IVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYA 178 (513)
Q Consensus 124 ~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~ 178 (513)
. +-++.|+..+..+|.......+..| ++-....++......-|.++.++.++.
T Consensus 329 ~-~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~maivGGAiiP~l~G~i 381 (422)
T COG0738 329 Y-ALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVMAIVGGAIIPPLQGVI 381 (422)
T ss_pred H-HHHHHHHHhHHHHHHHHHHHHhccC-ccccccceeeeeheecchHHHHHHHHH
Confidence 4 5677888899999988888888888 333333333322333344444444443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.013 Score=57.01 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=112.9
Q ss_pred HHHHhhhCCCchhHHHHHHHHHHHHHHHHhhcccccc-ccCchHHHHHHHHHHHHHHH---HHHhcCcHHHHHHHHHHhh
Q 010317 56 LYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSD-YIGRRYTIVVAAATFLVGAL---AMGLAPNYPFLIVGRMIAG 131 (513)
Q Consensus 56 ~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d-r~GRr~~~~~~~~~~~i~~~---~~~~~~~~~~l~~~R~l~G 131 (513)
||=.+-||+|..|...++.....|..+|-...|++.. |.++++.-.+++.+..++-. ..+...+.+.+...-++.|
T Consensus 233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G 312 (403)
T PF03209_consen 233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG 312 (403)
T ss_pred CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 3445668999999999999999999999999998887 77778777777776665543 3456678899999999999
Q ss_pred hhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhc----CC---CCCcchHHHHHhhhHHHHHHHH
Q 010317 132 IGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALS----GL---PGNINWRIMLGLAAVPAAVIGV 204 (513)
Q Consensus 132 ~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~----~~---~~~~~Wr~~~~~~~~~~~i~~~ 204 (513)
++.|.........+.+...+.+.|..++.+....++..-++.+++..+. .+ ....++-.+|.++++..++...
T Consensus 313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999888888999999999999999888766655544444433322 11 1335688888887776555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.17 Score=51.34 Aligned_cols=124 Identities=13% Similarity=-0.016 Sum_probs=84.3
Q ss_pred HHHhhhCCC-----chhHHHHHHHHHHHHHHH-HhhccccccccCchHHHHHHHHHHHHHHHHHHhc--Cc---------
Q 010317 57 YIKEDLEIT-----EVQVEVLVGILNVFSLIG-SLASGKTSDYIGRRYTIVVAAATFLVGALAMGLA--PN--------- 119 (513)
Q Consensus 57 ~~~~~~~~s-----~~~~~~~~s~~~~g~~ig-~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~--~~--------- 119 (513)
.+++.+.++ .+...++.+...+...+. .++.+++++|++|++.+.+....+.+.-.+.++. ++
T Consensus 28 ~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~ 107 (472)
T TIGR00769 28 DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTAL 107 (472)
T ss_pred hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHH
Confidence 466777663 246788888777766666 8889999999999999988887777666665544 11
Q ss_pred --------------------HHHHHHHHHHhhhhcccccc-cccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 010317 120 --------------------YPFLIVGRMIAGIGVGYSLM-ISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYA 178 (513)
Q Consensus 120 --------------------~~~l~~~R~l~G~~~g~~~~-~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~ 178 (513)
.|...+.-....+......+ .-..++.|.+..++-.+..++...+.++|.+++..+...
T Consensus 108 ~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~ 187 (472)
T TIGR00769 108 ADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKY 187 (472)
T ss_pred HHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111222222222223333 445788999999999999999999999998888766444
Q ss_pred hc
Q 010317 179 LS 180 (513)
Q Consensus 179 ~~ 180 (513)
+.
T Consensus 188 ~~ 189 (472)
T TIGR00769 188 FS 189 (472)
T ss_pred HH
Confidence 43
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.003 Score=62.75 Aligned_cols=125 Identities=19% Similarity=0.169 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhc-cCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeeccc
Q 010317 339 TFFVVLSALHLDK-FGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEI 417 (513)
Q Consensus 339 ~~~~~~~~~~~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el 417 (513)
-...+++||+.|| +|+|+..+++.+.+.+..++++... ..........+.++ ...+...=+..-....|+
T Consensus 75 Y~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~---~~~~~gl~i~L~~I------~iG~Gl~K~NiS~llg~l 145 (498)
T COG3104 75 YLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS---VSGPGGLYIGLALI------IVGTGLFKPNISSLLGEL 145 (498)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc---cccccHHHHHHHHH------HhccccccccHHHHHHHh
Confidence 3556789999999 6999999988877777776666432 01111111111111 111111223344567788
Q ss_pred CChh--hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhh
Q 010317 418 FPLR--LRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFF 472 (513)
Q Consensus 418 ~P~~--~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (513)
+|++ .|..+.++.....|+++.+.+...+...+..++...|-+.++-..++.+..
T Consensus 146 y~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f 202 (498)
T COG3104 146 YPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIF 202 (498)
T ss_pred cCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 8653 366777777777888888888888888888888888887777666665554
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.017 Score=58.94 Aligned_cols=142 Identities=16% Similarity=0.094 Sum_probs=91.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccc
Q 010317 329 GINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGP 408 (513)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (513)
.+.....++..++.+.++.+.||++-.+.+..+ .++..++++..... . +.. .++++=++.+.+-.+.+|
T Consensus 85 ~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~----~~~w~~~~~~~~~~---~-s~~---~~ialr~llGl~es~~wP 153 (495)
T KOG2533|consen 85 VLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVS----GILWGLFGFLTAAV---H-SFP---GLIALRFLLGLFESGGWP 153 (495)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHH----HHHHHHHHHHHHHH---h-hhH---HHHHHHHHHHHHhcccch
Confidence 355667788889999999999999955444332 22222333222211 1 111 122222333445455566
Q ss_pred eeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHH------HHhcccchhHHHHHHHHHHHHHhhheecccCCC
Q 010317 409 ITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSI------SHRLSFGGTFFLLAGITTVGTIFFYVFLPETKG 481 (513)
Q Consensus 409 ~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 481 (513)
..-.+++.-|.++-|++-.|+-++.+.+++++.+..-... ....++++.|++-+++.++.++++++++|+.-.
T Consensus 154 ~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 154 GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 6677888999999999999998877666555544433222 123578889999999999999999999986543
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.046 Score=54.58 Aligned_cols=139 Identities=14% Similarity=0.164 Sum_probs=75.6
Q ss_pred HHHHHHHHhhcccccchhhHHHHhh--hCCCchhHHHHH--HH-HHHHHHHHHhhccccccccCchHHHHH------HHH
Q 010317 37 ASINSILLGYDIGVMSGAVLYIKED--LEITEVQVEVLV--GI-LNVFSLIGSLASGKTSDYIGRRYTIVV------AAA 105 (513)
Q Consensus 37 ~~~~~~~~g~~~~~~~~~~~~~~~~--~~~s~~~~~~~~--s~-~~~g~~ig~~~~g~l~dr~GRr~~~~~------~~~ 105 (513)
..+-+++.|...+...-++|.+-++ =++|-+|.+... +. |.+=..-..++=...+.|+|||+..++ +..
T Consensus 5 L~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~ 84 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGIL 84 (544)
T ss_pred HHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHH
Confidence 3455788888887766677887776 567777766532 22 222233344455667779999998544 333
Q ss_pred HHHHHHHH----------HHhc-------CcHH--HHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHH
Q 010317 106 TFLVGALA----------MGLA-------PNYP--FLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIV 166 (513)
Q Consensus 106 ~~~i~~~~----------~~~~-------~~~~--~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~ 166 (513)
+..++.-+ -... .+.. .+....++.=+-.+---..+-.+.-.+..+++++.++.+..++..
T Consensus 85 m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~ 164 (544)
T PF13000_consen 85 MLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQT 164 (544)
T ss_pred HHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhh
Confidence 33333322 0110 0111 223333233222333333334455556677888888887666666
Q ss_pred HHHHHHHHH
Q 010317 167 LGILSGYVF 175 (513)
Q Consensus 167 ~G~~~~~~~ 175 (513)
.|..++...
T Consensus 165 ~Gyfls~tv 173 (544)
T PF13000_consen 165 AGYFLSFTV 173 (544)
T ss_pred hhHHHHHHH
Confidence 666655443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.07 Score=52.58 Aligned_cols=127 Identities=17% Similarity=0.114 Sum_probs=74.4
Q ss_pred HHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCccccccc
Q 010317 79 FSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLT 158 (513)
Q Consensus 79 g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~ 158 (513)
-..+-.+.+.++.+|..=+.=..+..+++.++.++.+++++.+.=+++-.+.+++.|........+.+ .+++. ..
T Consensus 71 P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~~----~l 145 (402)
T PF02487_consen 71 PSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGKS----SL 145 (402)
T ss_pred HHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCcc----cc
Confidence 34445556667777776443455566677788888899999988888888888888887766655533 44432 22
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhH-HHHHHHHHHhccCCC
Q 010317 159 SLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAV-PAAVIGVGVLIMPES 212 (513)
Q Consensus 159 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~-~~~i~~~~~~~lpEs 212 (513)
+.++.+...+.++|...-..+.. ...+-|..++.... |.+.....++.+|.+
T Consensus 146 ~~wssGTG~aGl~Ga~~y~~lT~--~g~s~~~tll~~~~lp~~~~~~~f~~L~~~ 198 (402)
T PF02487_consen 146 SAWSSGTGGAGLVGALYYLGLTT--LGLSPRTTLLIMLVLPAIFLLSYFFLLPSP 198 (402)
T ss_pred ccccCCcChhhHHHHHHHHHHHH--hCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33333444455555554444432 12234555555444 444444445555544
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.15 Score=49.12 Aligned_cols=136 Identities=15% Similarity=0.137 Sum_probs=81.3
Q ss_pred HHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhcccccc-----ccCchHH------HHHHH
Q 010317 36 LASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSD-----YIGRRYT------IVVAA 104 (513)
Q Consensus 36 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d-----r~GRr~~------~~~~~ 104 (513)
+..+-+.+.|...+..+ ++|.+-+.=|+|-++.+...-++. - .---+.+.++.| |+|||+. ++++.
T Consensus 35 lLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~-P-~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~ 111 (510)
T KOG3574|consen 35 LLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW-P-FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGL 111 (510)
T ss_pred HHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh-H-HHHHHHHHhhhHHHHHHhhccccceeeehHHHHHH
Confidence 33455788888888888 899988877888777766433221 1 123567788888 9999886 34444
Q ss_pred HHHHHHHHH------HHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHH
Q 010317 105 ATFLVGALA------MGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYV 174 (513)
Q Consensus 105 ~~~~i~~~~------~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~ 174 (513)
+++.++... .+-.++...+...-++.-+..+.--...-.+.-.+..+++-|.++....++...|..++..
T Consensus 112 ~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ 187 (510)
T KOG3574|consen 112 FMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNV 187 (510)
T ss_pred HHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcc
Confidence 444444321 1122344444344444444444444444444555666777888877766666666555543
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.053 Score=53.36 Aligned_cols=118 Identities=23% Similarity=0.167 Sum_probs=67.8
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHH--HHHHHHHH
Q 010317 325 PVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIA--VCAFVSFF 402 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 402 (513)
.....++.+..++.++..+.+.|+.||+|-|....++....++...+=.+...- ..++.....+++.. ++...+-|
T Consensus 79 ~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p--~v~~~f~~~l~~~Gq~iaa~Aq~F 156 (480)
T KOG2563|consen 79 SAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLP--FVPPLFRRPLTHTGQSIAAAAQPF 156 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCc--cccccchhhhhHHhHHHHHHhhhH
Confidence 344557788888889999999999999999999888776554444333322211 01122221122211 11222222
Q ss_pred hccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010317 403 SIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSI 448 (513)
Q Consensus 403 ~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~ 448 (513)
.++. +.=...--||++.|+.+..++.+-+.++ ..++.+++++
T Consensus 157 im~l---PskiA~~WF~~~qra~A~~~~v~~n~LG-vavg~llppi 198 (480)
T KOG2563|consen 157 ILGL---PSKIAAVWFPPDQRAIATVLGVMGNPLG-VAVGFLLPPI 198 (480)
T ss_pred hhcc---ccHHHHhhCCcchhhhhhhHHHhcchHH-HHHHhhccce
Confidence 2221 1112233589999999999988877774 4444555443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.034 Score=55.96 Aligned_cols=143 Identities=13% Similarity=0.171 Sum_probs=75.0
Q ss_pred HhHHHHHHHHHHHHHhhccCC-hhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeee
Q 010317 334 MGLAKTFFVVLSALHLDKFGR-RPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWV 412 (513)
Q Consensus 334 ~~~~~~~~~~~~~~~~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (513)
..++..+..++.+++..|.+. |+.++++.++++++-++.+..... .+. . .++.+++= +...++.+..+.--.
T Consensus 80 ~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~-~~~--~--~y~mL~~R--~l~Gvg~~n~a~lR~ 152 (488)
T KOG2325|consen 80 SSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYV-PNG--V--KYLMLVAR--ILTGVGVGNFAVLRA 152 (488)
T ss_pred HHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhc-ccc--h--HHHHHHHH--HHcCcCcccHHHHHH
Confidence 567778888899999988885 666666766666665555332221 111 1 11111111 111111122223345
Q ss_pred eecccCChhhHhhHHHHHH---HHHHHHHHHHHHHHHHHHHhc----------ccchhHHHHHHHHHHHHHhhheecccC
Q 010317 413 YSSEIFPLRLRAQGSALAI---SVNRLVSGVISMTFLSISHRL----------SFGGTFFLLAGITTVGTIFFYVFLPET 479 (513)
Q Consensus 413 ~~~el~P~~~R~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~pet 479 (513)
|.++..-.+.|.++.+... .++-+.|......+.++.+.. .+..+-|+..++.++..+...+++.|-
T Consensus 153 Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~ 232 (488)
T KOG2325|consen 153 YIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV 232 (488)
T ss_pred HHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence 7777544444555544332 344444444444454443211 233466777777777777777777776
Q ss_pred CCCC
Q 010317 480 KGKT 483 (513)
Q Consensus 480 ~~~~ 483 (513)
....
T Consensus 233 ~~~~ 236 (488)
T KOG2325|consen 233 YRGI 236 (488)
T ss_pred ccCc
Confidence 5443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.39 Score=48.50 Aligned_cols=91 Identities=11% Similarity=-0.014 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcC-CCCC--cchH--HHHH
Q 010317 119 NYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSG-LPGN--INWR--IMLG 193 (513)
Q Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~-~~~~--~~Wr--~~~~ 193 (513)
.+...++.-++.|++.+........+.+ .+|++.-+ ....+.+++.+++.++...... ..+. ..++ .+|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~~~----a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTYSS----AVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHHHH----HHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 4566777778889888888877777655 45654322 2222334444444443332211 1111 2233 3444
Q ss_pred hhhHHHHHHHHHHhccCCCch
Q 010317 194 LAAVPAAVIGVGVLIMPESPR 214 (513)
Q Consensus 194 ~~~~~~~i~~~~~~~lpEsp~ 214 (513)
+..+..++.++.+..++..|.
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 444444555555666777764
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.012 Score=57.92 Aligned_cols=141 Identities=16% Similarity=0.028 Sum_probs=93.7
Q ss_pred HHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHH---HHH
Q 010317 37 ASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVG---ALA 113 (513)
Q Consensus 37 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~---~~~ 113 (513)
..+.++.+++-.+.+.+.+. ...++.-...++.+...+|-+|-.++---...+ |+-|-+.+.+--.+..+. ..+
T Consensus 252 L~lVY~aEY~InqGv~~tl~-fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~ 328 (402)
T PF02487_consen 252 LFLVYFAEYFINQGVAPTLL-FPNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSW 328 (402)
T ss_pred HHHHHHHHHHHHhchHHHhc-CCccCCCHHHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHH
Confidence 45667777766655555442 122233345567777777777666654333222 442322222222222222 233
Q ss_pred HHhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhc
Q 010317 114 MGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALS 180 (513)
Q Consensus 114 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~ 180 (513)
.-+.++.+..++.-+..|+..|..++.+...+.|..|+++|...++...++..+|.+++.+++..+.
T Consensus 329 ~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 329 YRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3457888999999999999999999999888899999999999999999999999999988876543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.51 Score=45.48 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=74.6
Q ss_pred HHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHH----HH
Q 010317 315 VFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVV----VL 390 (513)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 390 (513)
++++.+..... +..+.........+...+.|.+.||+|||+.-++..+....+ +. .....+.... .+
T Consensus 60 LY~~yg~~~~q-Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~s------cl--~k~~~~~~~L~~GRvl 130 (354)
T PF05631_consen 60 LYESYGFSEHQ-IAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLS------CL--TKHSSNYPVLLLGRVL 130 (354)
T ss_pred HHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH------HH--HHhccccHHHHHHHHH
Confidence 34444544333 333455555666777788899999999998754332221111 11 1112221111 11
Q ss_pred HHHHHHHHHHHHhccccceeee---eecccCChhhHhhHHHHHHHHHHHHHHHHHHHHH-HHHHhcc--cchhHHHHHHH
Q 010317 391 CIIAVCAFVSFFSIGLGPITWV---YSSEIFPLRLRAQGSALAISVNRLVSGVISMTFL-SISHRLS--FGGTFFLLAGI 464 (513)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~---~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~ 464 (513)
.-+...+....|- .|. +-..=+|.+..+.-.+....++|-...+++.+.. ...+..+ ...+|.....+
T Consensus 131 gGiaTSLLfS~FE------sW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~ 204 (354)
T PF05631_consen 131 GGIATSLLFSAFE------SWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVL 204 (354)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHH
Confidence 1122222222221 121 1123467776665555444333322222222222 2233333 35678888888
Q ss_pred HHHHHHhhheecccCCCC
Q 010317 465 TTVGTIFFYVFLPETKGK 482 (513)
Q Consensus 465 ~~~~~~~~~~~~pet~~~ 482 (513)
..++.+++....+|..+.
T Consensus 205 l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 205 LAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHHhcccccCCC
Confidence 888877777777887765
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.31 Score=51.90 Aligned_cols=130 Identities=16% Similarity=0.141 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhhc-cCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeeccc
Q 010317 339 TFFVVLSALHLDK-FGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEI 417 (513)
Q Consensus 339 ~~~~~~~~~~~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el 417 (513)
-+..++++++.|+ +||++.+..+.+...+...++++... ............++++.+ ......+.-|..-....|.
T Consensus 37 yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~--~~~~~~~~~~~~l~gLaL-ia~G~GgiKp~vsaf~gdq 113 (654)
T TIGR00926 37 YLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI--PSSGHPLHDLLDLLGLAL-IALGTGGIKPCVSAFGGDQ 113 (654)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC--cccccchHHHHHHHHHHH-HHhhccccccCchhhhHhh
Confidence 4455678888875 79998887776665555544443211 111111111111111111 1122222224444556677
Q ss_pred CChh---hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccchhHHHHHHHHHHHHHh
Q 010317 418 FPLR---LRAQGSALAISVNRLVSGVISMTFLSISHRL-------SFGGTFFLLAGITTVGTIF 471 (513)
Q Consensus 418 ~P~~---~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 471 (513)
++.+ .|.....+.....++++.++....+.+.+.. ++..+|.+.+++.+++.++
T Consensus 114 f~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 114 FEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 7542 4667777888888887777666666665332 3445666666666655444
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.036 Score=40.70 Aligned_cols=61 Identities=21% Similarity=0.333 Sum_probs=44.7
Q ss_pred HhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHh
Q 010317 299 FMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLL 360 (513)
Q Consensus 299 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~ 360 (513)
+.+..+...+.-|.|.++++.|.+..... .+..+..+...++..+.++++||.+|++..+.
T Consensus 10 f~~f~~~g~~~Pfl~~~~~~~Gl~~~~iG-il~~i~~~~~~~~~pl~g~laDk~~~~~~~l~ 70 (77)
T PF12832_consen 10 FFYFAALGCLYPFLPLYLKQLGLSPSQIG-ILSAIRPLIRFLAPPLWGFLADKFGKRKVILL 70 (77)
T ss_pred HHHHHHHHHHHhhhhHhhhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCccHHHHH
Confidence 33444555666788888888776665443 35556667888999999999999999987654
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.45 Score=43.58 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=36.0
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHhc-C--CCCCcchHHHHHhhhHHHHHHHHHHh
Q 010317 152 MKRGFLTSLPEVFIVLGILSGYVFNYALS-G--LPGNINWRIMLGLAAVPAAVIGVGVL 207 (513)
Q Consensus 152 ~~R~~~~~~~~~~~~~G~~~~~~~~~~~~-~--~~~~~~Wr~~~~~~~~~~~i~~~~~~ 207 (513)
|+|+..+.+...++.+|.++.-+. +... . ......|++++.+.++..++..+.+.
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ip-F~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ 59 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIP-FLISSSVVIALTNNWQWILSIFILLIFIPLILYI 59 (267)
T ss_pred CccceeeeeccccchhhHHHHHhh-HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888889998876443 3332 1 11233699999888877666555543
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.55 E-value=2.7 Score=41.40 Aligned_cols=176 Identities=11% Similarity=0.026 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHH----HHHHHHhhccccccccCchHHHHHHHH
Q 010317 30 AFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNV----FSLIGSLASGKTSDYIGRRYTIVVAAA 105 (513)
Q Consensus 30 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~----g~~ig~~~~g~l~dr~GRr~~~~~~~~ 105 (513)
...+.++..++..+ +-..+..+.++..+++--++. ....++.+.+ ...+....-..+.-|.-+|..+.....
T Consensus 19 v~~i~~llGiG~Ll---pWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~ 94 (406)
T KOG1479|consen 19 VYLIFLLLGIGTLL---PWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLI 94 (406)
T ss_pred HHHHHHHHhccccc---chHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555543 333444555677666644433 2222333333 333444455566666433333333322
Q ss_pred HH-HHHHHHHHh-------cCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHH
Q 010317 106 TF-LVGALAMGL-------APNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNY 177 (513)
Q Consensus 106 ~~-~i~~~~~~~-------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~ 177 (513)
.. .+..+..+. ...|...++.-.+.|.+.|..........++ +|++.-.-.++ +.+++..+..++..
T Consensus 95 ~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~----G~a~aG~l~Sl~~i 169 (406)
T KOG1479|consen 95 AILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMS----GQALAGTLTSLLRI 169 (406)
T ss_pred HHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHh----cchhHhHHHHHHHH
Confidence 22 111222222 1245566677777777777766665555444 55554322221 22233333333322
Q ss_pred HhcCC--CCCcchHHHHHhhhHHHHHHHHHHhccCCCch
Q 010317 178 ALSGL--PGNINWRIMLGLAAVPAAVIGVGVLIMPESPR 214 (513)
Q Consensus 178 ~~~~~--~~~~~Wr~~~~~~~~~~~i~~~~~~~lpEsp~ 214 (513)
..... ..+.+=...|.+..+..++.++.+..+|..|.
T Consensus 170 ~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 170 LTKAAFSDSRTSALIYFITSTVILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHHHhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcchH
Confidence 22111 11233345555555555555555556677763
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.1 Score=47.63 Aligned_cols=91 Identities=20% Similarity=0.247 Sum_probs=63.3
Q ss_pred HHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcccc
Q 010317 58 IKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYS 137 (513)
Q Consensus 58 ~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~ 137 (513)
+-..++.-..|++.+.-.-+-..++...+.|.++||-|||+.-...++.+.++++ +-.++.|-.++++|.+.|+..+..
T Consensus 63 LYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLL 141 (454)
T KOG4332|consen 63 LYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLL 141 (454)
T ss_pred eehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHH
Confidence 4455666667776654444444556666777899999999987777766666543 456889999999999999987665
Q ss_pred ccccc-ceeeccC
Q 010317 138 LMISP-VYTAEIS 149 (513)
Q Consensus 138 ~~~~~-~~~~e~~ 149 (513)
.+.-- +++.|.-
T Consensus 142 FSaFEsWliaEHn 154 (454)
T KOG4332|consen 142 FSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHHHHhh
Confidence 44332 5666654
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.53 Score=47.69 Aligned_cols=134 Identities=20% Similarity=0.197 Sum_probs=69.1
Q ss_pred HHHHHHHhhcc-----CChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecc
Q 010317 342 VVLSALHLDKF-----GRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSE 416 (513)
Q Consensus 342 ~~~~~~~~d~~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 416 (513)
-.+.|.++|-+ .||..++++.+......+.++.... ...+.......+....++..++-- +.-....|
T Consensus 41 Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~----~~~s~~~~~~~l~la~~g~a~~DV---~aDa~vvE 113 (433)
T PF03092_consen 41 KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA----SESSAAIAVVLLFLASFGYAFADV---AADALVVE 113 (433)
T ss_pred hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc----ccchhhhHHHHHHHHHHHHHHHHH---hhhHHHHH
Confidence 46678888976 3566666665554443444433222 111111111111111111111111 12223344
Q ss_pred c---CChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhheecccCCCCC
Q 010317 417 I---FPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKT 483 (513)
Q Consensus 417 l---~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 483 (513)
. -|.+ |+.-.+.+..+..+++.+....-....+..+....|.+.+.+.++..+...++.+|.+.++
T Consensus 114 ~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~~ 182 (433)
T PF03092_consen 114 LARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKVRP 182 (433)
T ss_pred HhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhccccc
Confidence 4 3555 7777777776666655555545556666677777788877777776666666667744343
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=93.63 E-value=1.7 Score=36.90 Aligned_cols=93 Identities=11% Similarity=0.067 Sum_probs=49.9
Q ss_pred HHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceee
Q 010317 332 VVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITW 411 (513)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (513)
.+......+..++.+.+++++|.|+.++++.+..+.-.... . ..+.+..+.. ....++.....+...-
T Consensus 44 ai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~----~----~~~~~~l~~~----s~l~G~~~a~lW~aqg 111 (156)
T PF05978_consen 44 AILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF----F----YPNSYTLYPA----SALLGFGAALLWTAQG 111 (156)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH----H----hhhHHHHHHH----HHHHhhhhHHhhHhhh
Confidence 33445566777888899999999999988765443222111 1 0111111111 1111111111112223
Q ss_pred eeecccCChhhHhhHHHHHHHHHHH
Q 010317 412 VYSSEIFPLRLRAQGSALAISVNRL 436 (513)
Q Consensus 412 ~~~~el~P~~~R~~~~g~~~~~~~~ 436 (513)
.|.++...++.|++-.|+.-.+.+.
T Consensus 112 ~ylt~~s~~~~~~~~~~ifw~i~~~ 136 (156)
T PF05978_consen 112 TYLTSYSTEETIGRNTGIFWAIFQS 136 (156)
T ss_pred HHHHHcCCHHHHhhHHHHHHHHHHH
Confidence 4667777788888888877666664
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.72 Score=46.29 Aligned_cols=133 Identities=18% Similarity=0.201 Sum_probs=87.8
Q ss_pred hHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHH---hcCcH--HHHHHHHHH
Q 010317 55 VLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMG---LAPNY--PFLIVGRMI 129 (513)
Q Consensus 55 ~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~---~~~~~--~~l~~~R~l 129 (513)
..++... |+++..++..-+.-.+....|.+.+.++.+|+|..+.=.++.....+...++. +.+.- ...-+.-++
T Consensus 282 t~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~ 360 (432)
T PF06963_consen 282 TAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLL 360 (432)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHH
Confidence 3445555 99999999999999999999999999999999998888877775544433332 23221 111222222
Q ss_pred hhh-----hcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchH
Q 010317 130 AGI-----GVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWR 189 (513)
Q Consensus 130 ~G~-----~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr 189 (513)
.|+ |.=+......-++-|..|.++||...+.......+--++.+++..... .+.+++|-
T Consensus 361 ~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~-~P~~F~~l 424 (432)
T PF06963_consen 361 GGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP-RPSQFGWL 424 (432)
T ss_pred HHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC-ChHhcChH
Confidence 222 222233344456899999999999999888777777777666654332 33445553
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.23 Score=49.23 Aligned_cols=107 Identities=17% Similarity=0.215 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHh---cCcH------HHHHHHHHHhhhhcccccccccceeeccCCCccccc---ccchhhHHH
Q 010317 98 YTIVVAAATFLVGALAMGL---APNY------PFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGF---LTSLPEVFI 165 (513)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~~---~~~~------~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~---~~~~~~~~~ 165 (513)
+++.++.+++.++..+..+ -... ..+.++-++.++|.|+.=+....+..|-++++.+.+ ....+....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 5677888888888777332 2232 578888899999999999999999999888764333 334445566
Q ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHh
Q 010317 166 VLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVL 207 (513)
Q Consensus 166 ~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~ 207 (513)
++|.+++......+. ++.+|.+.|.+.++..++..+.++
T Consensus 82 n~G~~~~~~~~~~i~---~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQ---QNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHCCCHHH---HCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhc---cccchhhhhhHHHHHHHHHHHHHH
Confidence 778777765544443 456999999987776666555443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.99 E-value=2.4 Score=42.76 Aligned_cols=96 Identities=21% Similarity=0.255 Sum_probs=69.8
Q ss_pred HHHHHHHHhhccccc---cccCchHHHHHHHHHHHHHHHHHHhc------------------CcHHHHHHHHHHhhhhcc
Q 010317 77 NVFSLIGSLASGKTS---DYIGRRYTIVVAAATFLVGALAMGLA------------------PNYPFLIVGRMIAGIGVG 135 (513)
Q Consensus 77 ~~g~~ig~~~~g~l~---dr~GRr~~~~~~~~~~~i~~~~~~~~------------------~~~~~l~~~R~l~G~~~g 135 (513)
.+|..++.++.+.+. +++||++.+.++..+..+..++.... +++....+.-++.|++-+
T Consensus 289 g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~ 368 (461)
T KOG3098|consen 289 GLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDA 368 (461)
T ss_pred hHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHH
Confidence 344445555566666 57799999999999888887766543 135567777889999999
Q ss_pred cccccccceeeccCCCcccccccchhhHHHHHHHHHHH
Q 010317 136 YSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGY 173 (513)
Q Consensus 136 ~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~ 173 (513)
.......+++.... +++|..+.++.-....++..++.
T Consensus 369 ~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~ 405 (461)
T KOG3098|consen 369 CFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAF 405 (461)
T ss_pred HHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888 56777777776666666665543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.41 E-value=4.1 Score=42.28 Aligned_cols=117 Identities=17% Similarity=0.097 Sum_probs=61.1
Q ss_pred HHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHH-HHH-HHHH----HHHhcCcH-HHHHHHHHHh
Q 010317 58 IKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAA-TFL-VGAL----AMGLAPNY-PFLIVGRMIA 130 (513)
Q Consensus 58 ~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~-~~~-i~~~----~~~~~~~~-~~l~~~R~l~ 130 (513)
+.--+|-+..+.+.+.+++..|.++|+..++++.++--|+....-..+ +.+ ++.. ..++...+ ..+...-++.
T Consensus 41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 120 (521)
T PRK03612 41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLI 120 (521)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467777888999999999999999999988744333332211111 111 1110 11111111 1123334455
Q ss_pred hhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHH
Q 010317 131 GIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVF 175 (513)
Q Consensus 131 G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~ 175 (513)
|+..|...+.......+... ++-+...+-......+|.++|.++
T Consensus 121 ~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~ 164 (521)
T PRK03612 121 GLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLA 164 (521)
T ss_pred HHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHH
Confidence 66666666554443333221 112344455555667777776655
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=91.36 E-value=1.9 Score=43.45 Aligned_cols=19 Identities=16% Similarity=0.436 Sum_probs=13.5
Q ss_pred HHHHHHhhccCChhHHHhh
Q 010317 343 VLSALHLDKFGRRPLLLLG 361 (513)
Q Consensus 343 ~~~~~~~d~~grr~~~~~~ 361 (513)
++-+...+|+|||+..++-
T Consensus 58 iVDs~y~~~~GRRKSWiiP 76 (544)
T PF13000_consen 58 IVDSVYSKRIGRRKSWIIP 76 (544)
T ss_pred hhhhhcccccCCcchhhhH
Confidence 4445566789999987764
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.05 E-value=13 Score=34.58 Aligned_cols=92 Identities=22% Similarity=0.248 Sum_probs=46.1
Q ss_pred HHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceee
Q 010317 332 VVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITW 411 (513)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (513)
....+...++.++.+.+.||.|||+.+..+........++.+.. .. ............ .+.......+...
T Consensus 46 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~----~g~~~~~~~~~~~ 116 (338)
T COG0477 46 SAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA----PN-VGLALLLILRLL----QGLGGGGLLPVAS 116 (338)
T ss_pred HHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC----cc-chHHHHHHHHHH----HHhhhHHHHHHHH
Confidence 33444555555889999999999977665543312221111111 11 111111111110 1111112234556
Q ss_pred eeecccCCh-hhHhhHHHHHHH
Q 010317 412 VYSSEIFPL-RLRAQGSALAIS 432 (513)
Q Consensus 412 ~~~~el~P~-~~R~~~~g~~~~ 432 (513)
.+..|.+|. +.|+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~ 138 (338)
T COG0477 117 ALLSEWFPEATERGLAVGLVTL 138 (338)
T ss_pred HHHHHhcCchhHHHHHHHHHHH
Confidence 778899897 567777776655
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=87.98 E-value=35 Score=35.13 Aligned_cols=115 Identities=13% Similarity=0.050 Sum_probs=68.9
Q ss_pred chhHHHHHHHHHH-HHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhc--C-------cH-HH---HHHHHHHhh
Q 010317 66 EVQVEVLVGILNV-FSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLA--P-------NY-PF---LIVGRMIAG 131 (513)
Q Consensus 66 ~~~~~~~~s~~~~-g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~--~-------~~-~~---l~~~R~l~G 131 (513)
++....+-....+ ...+..+....++|+++|.+++-+....+...-.+.++. | +. .. ....+.+.|
T Consensus 57 ae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~ 136 (491)
T PF03219_consen 57 AEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKG 136 (491)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHH
Confidence 3445555554333 445667778999999999999988887776665555542 1 11 00 000011111
Q ss_pred ------------------hhcccccc-cccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhc
Q 010317 132 ------------------IGVGYSLM-ISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALS 180 (513)
Q Consensus 132 ------------------~~~g~~~~-~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~ 180 (513)
+-.....+ .-..+..|.++.++-.+..++...+.++|.+++..+...+.
T Consensus 137 ~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~ 204 (491)
T PF03219_consen 137 FIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFS 204 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111112 23567889999999888999888888888776655544443
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.43 E-value=7.6 Score=37.08 Aligned_cols=74 Identities=19% Similarity=0.334 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcccccccccceeeccCC
Q 010317 76 LNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISP 150 (513)
Q Consensus 76 ~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p 150 (513)
.++..+..+++.+.+..++|-|+++.++...+... +..-+-+.+..++-+-...|++.+..+..-..|+++...
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 44555556666668999999999999998888654 223355778899999999999999999888889887654
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=84.35 E-value=47 Score=33.18 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHH
Q 010317 339 TFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLG 373 (513)
Q Consensus 339 ~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~ 373 (513)
....+....+.|.++-|++++++.++...+..++.
T Consensus 55 l~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll 89 (412)
T PF01770_consen 55 LAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLL 89 (412)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 33444555677999999999988776555555443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=84.31 E-value=7.6 Score=28.99 Aligned_cols=66 Identities=17% Similarity=-0.023 Sum_probs=41.5
Q ss_pred hhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHH
Q 010317 307 AVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLG 373 (513)
Q Consensus 307 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~ 373 (513)
.+.-.+|.+.++.+.+.... ..+.....++..+|.+...++.++..+|+.+..+.+....+...++
T Consensus 10 ayTplLP~M~~~~~ls~~~a-g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma 75 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSLSQA-GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMA 75 (85)
T ss_pred HHHhHhHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 33446677777666554433 3356667778888888888877776667777666554444444443
|
Note that many members are hypothetical proteins. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=84.03 E-value=54 Score=33.59 Aligned_cols=37 Identities=14% Similarity=0.050 Sum_probs=29.6
Q ss_pred eeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHH
Q 010317 409 ITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTF 445 (513)
Q Consensus 409 ~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~ 445 (513)
+.|.+.+|++.++.-.+-.++....++++..+.+...
T Consensus 149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~ 185 (472)
T TIGR00769 149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTI 185 (472)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6688999999998888888998888888666655443
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=81.32 E-value=14 Score=37.47 Aligned_cols=109 Identities=17% Similarity=0.308 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHhhccccccccCch--HHHHHH--HHHHHHHHHHHHhc---------CcHHHHHHHHHHhhhhccc
Q 010317 70 EVLVGILNVFSLIGSLASGKTSDYIGRR--YTIVVA--AATFLVGALAMGLA---------PNYPFLIVGRMIAGIGVGY 136 (513)
Q Consensus 70 ~~~~s~~~~g~~ig~~~~g~l~dr~GRr--~~~~~~--~~~~~i~~~~~~~~---------~~~~~l~~~R~l~G~~~g~ 136 (513)
-....++++|=.+|-.+..+.. .-++| ..+..+ -+++.-.-++|..- ++-+..++.-++.|+..|.
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 4566778888888888665432 11222 333222 22222222333322 3455677789999999999
Q ss_pred ccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHh
Q 010317 137 SLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYAL 179 (513)
Q Consensus 137 ~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 179 (513)
..+....+..+..++++|..+..+...+..+|..+|..+++.+
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988889999998899999888888888899998888876543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 513 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 6e-39 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 1e-08
Identities = 50/432 (11%), Positives = 132/432 (30%), Gaps = 66/432 (15%)
Query: 56 LYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRR----YTIVVAAATFLVGA 111
+++ + I++ ++ +++FSL+ G SD +G R + I F
Sbjct: 32 IWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF 91
Query: 112 LAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILS 171
+ + ++VG ++ GI +G+ + R + G +
Sbjct: 92 IFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRA-RMFGCVG 150
Query: 172 GYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLK 231
+ + + N + + + + ++P
Sbjct: 151 WALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAP------------------ 192
Query: 232 VSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLI 291
S + + G F+ + + + + P + + +
Sbjct: 193 ----------------------SSATVANAVGANHSAFSLKLALE--LFR-QPKLWFLSL 227
Query: 292 AAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGI-NVVMGLAKTFFVVLSALHLD 350
+G++ ++T + F + +FG + L + + L ++
Sbjct: 228 YVIGVSCTYDVFDQQFANFFT-SFFATGEQGTR--VFGYVTTMGELLNASIMFFAPLIIN 284
Query: 351 KFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPIT 410
+ G + LLL + M ++ ++ VV+L + +
Sbjct: 285 RIGGKNALLLAGTIMSVRIIGSSF------ATSALEVVILKTLHMFEVPFLLVGCF---- 334
Query: 411 WVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLS--ISHRLSFGGTFFLLAGITTVG 468
Y + F +R A + + ++ + M+ L+ + + F G + +L +
Sbjct: 335 -KYITSQFEVRFSATIYLVCFCFFKQLAMIF-MSVLAGNMYESIGFQGAYLVLGLVALGF 392
Query: 469 TIFFYVFLPETK 480
T+ L
Sbjct: 393 TLISVFTLSGPG 404
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 55/422 (13%), Positives = 124/422 (29%), Gaps = 72/422 (17%)
Query: 75 ILNVFSL---IGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAP----NYPFLIVGR 127
L+ S+ G SD R + L MG P + + V
Sbjct: 67 ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 126
Query: 128 MIAGIGVGYSLMISPVYTAEIS---PTMKRGFLTSLPEVFIVLG-ILSGYVFNYALSGLP 183
+ G G M P + +RG + S+ +G + +F ++
Sbjct: 127 FLCGWFQG---MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 183
Query: 184 GNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERL 243
W L + A A ++ + + +M+ + E+ +
Sbjct: 184 D---WHAALYMPAFCAILVALFA--------FAMMRDTPQS-----CGLPPIEEYKNDYP 227
Query: 244 DDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQAS 303
DD + A++ + + ++ + + I
Sbjct: 228 DDYNEKAEQELT--------------AKQIFMQYVLPNKL-------LWYIAIANVFVYL 266
Query: 304 GNDAVIYYTPAVF---KGAGIHRKPVLFGINVVMGLAKTFFV-VLSALHLDKFGRRPLLL 359
++ ++P K + + + + G+ T +S DK R
Sbjct: 267 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMS----DKVFRGNRGA 322
Query: 360 LGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFP 419
G M + + G+ ++ + +I F G + +++ E+ P
Sbjct: 323 TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG------FLIYGPVMLIGLHALELAP 376
Query: 420 LRLRAQGSALAISVNRL--VSGVISMTFLS--ISHRLSFGGTFFLLAGITTVGTIFFYVF 475
+A G+A + G ++ + + + G F ++ G + + I V
Sbjct: 377 --KKAAGTAAGF-TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433
Query: 476 LP 477
+
Sbjct: 434 MI 435
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 3e-06
Identities = 64/425 (15%), Positives = 116/425 (27%), Gaps = 107/425 (25%)
Query: 58 IKEDLEITEVQVEVLVGILN--VFSLIGSLASGKTSDYIGRRYTIVV-----AAATFLVG 110
++ + +VQ ++ IL+ I + S R + ++ F+
Sbjct: 29 FVDNFDCKDVQ-DMPKSILSKEEIDHI--IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 111 ALAMGLAPNYPFLI-----VGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFI 165
L NY FL+ R + + Y +Y + + ++ + ++
Sbjct: 86 VLR----INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND--NQVFAKYNVSR-LQPYL 138
Query: 166 VL--GILS----GYVFNYALSGLPGNINWRIMLG-----LAAVPAAVIGVGVLIMPESPR 214
L +L V + G +LG +A V M
Sbjct: 139 KLRQALLELRPAKNVL---IDG---------VLGSGKTWVALDVCLSYKV-QCKMDFKIF 185
Query: 215 WLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGV 274
WL + + + VL E L ++ + S D
Sbjct: 186 WLNL-KNCNSPETVL-----------EMLQKLLYQIDPNWTSRSDHSSNIKL-RIHSIQA 232
Query: 275 WKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLF---GIN 331
+LK P +L+ V + + K +L
Sbjct: 233 ELRRLLKSKPYENCLLVL-------------LNV--QNAKAWNAFNLSCK-ILLTTRFKQ 276
Query: 332 VVMGLAKTFFVVLSALHLDK-FGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVV-- 388
V L+ +S H + SLLL + + P V+
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVK---------SLLLKYLDCRP--QDLPREVLTT 325
Query: 389 ---VLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTF 445
L IIA + G TW + +L + + S+N L F
Sbjct: 326 NPRRLSIIA--ESIR-----DGLATWDNWKHVNCDKLT---TIIESSLNVLEPAEYRKMF 375
Query: 446 --LSI 448
LS+
Sbjct: 376 DRLSV 380
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 58 IKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLA 117
+ DL + E V+ ++G + + L G SD +GRR I+V + F++ L
Sbjct: 26 MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT 85
Query: 118 PNYPFLIVGRMIAGIGVGYSLMIS 141
+ LI + G+G G +++
Sbjct: 86 SSLTVLIAASAMQGMGTGVGGVMA 109
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 513 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.97 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.95 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.93 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.9 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.89 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.07 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.95 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.93 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.93 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.75 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.73 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.57 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-51 Score=424.08 Aligned_cols=438 Identities=29% Similarity=0.542 Sum_probs=339.8
Q ss_pred chHHHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCC--------CchhHHHHHHHHHHHHHHHHhhccccccccCchH
Q 010317 27 NKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEI--------TEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRY 98 (513)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~ 98 (513)
+++.+.+++++.++.+++|||.+.++.+.|.++++++. ++++.+++.+++.+|..+|++++|+++||+|||+
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~ 86 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 56778888888999999999999999999999888743 3456789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh------------------cCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccch
Q 010317 99 TIVVAAATFLVGALAMGL------------------APNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSL 160 (513)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~ 160 (513)
++.++.+++.++++++++ ++|+++++++|+++|++.|+..+..+.|++|+.|+++|++..++
T Consensus 87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~ 166 (491)
T 4gc0_A 87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence 999999999999999994 78999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCC-----CCcchHHHHHhhhHHHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCC
Q 010317 161 PEVFIVLGILSGYVFNYALSGLP-----GNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDT 235 (513)
Q Consensus 161 ~~~~~~~G~~~~~~~~~~~~~~~-----~~~~Wr~~~~~~~~~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~ 235 (513)
.+.+...|.+.+...+....... ...+||+.+.+..++.++..+..+++||||||+..|+|.||+.+.+++....
T Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence 99999999998888776654321 2357999999999999988888999999999999999999999998877543
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHH
Q 010317 236 EQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAV 315 (513)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 315 (513)
+...++..+.......+.. ...+ ..... +++.........+.+..+.+.+.+|.|.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~------------------~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (491)
T 4gc0_A 247 TLATQAVQEIKHSLDHGRK------------------TGGR-LLMFG----VGVIVIGVMLSIFQQFVGINVVLYYAPEV 303 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------------HTTH-HHHSC----CTHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhh------------------hhhH-HHHhc----ccHHHHHHHHHHHHHHhhhhHHHhcchHH
Confidence 3222221111111100000 0001 11111 12233344455667778888889999998
Q ss_pred HHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHH
Q 010317 316 FKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAV 395 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (513)
.+..+.... .........++...++.++++++.||+|||+.++.+...+.++.+.++..... ...... .+...
T Consensus 304 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~---~~~~~ 376 (491)
T 4gc0_A 304 FKTLGASTD-IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT---QAPGIV---ALLSM 376 (491)
T ss_dssp HHHSSCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT---TCCHHH---HHHHH
T ss_pred HHhcCCCcc-chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc---ccchHH---HHHHH
Confidence 887664433 33345666778889999999999999999999988877777666655543321 111221 22333
Q ss_pred HHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH------hcccchhHHHHHHHHHHHH
Q 010317 396 CAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISH------RLSFGGTFFLLAGITTVGT 469 (513)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 469 (513)
..+...+..+.+++.|+|++|+||++.|+++.|+++.++++++.+.+..++.+.+ ..+....|++++++++++.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 456 (491)
T 4gc0_A 377 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 456 (491)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 4444566777888889999999999999999999999999988888877765432 2345567889999999999
Q ss_pred HhhheecccCCCCCHHHHHhHhcCC
Q 010317 470 IFFYVFLPETKGKTLEEMQALFGGD 494 (513)
Q Consensus 470 ~~~~~~~pet~~~~~~e~~~~~~~~ 494 (513)
+++++++||||||++||+++.++++
T Consensus 457 i~~~~~~PETkg~tLeei~~~f~~~ 481 (491)
T 4gc0_A 457 LFMWKFVPETKGKTLEELEALWEPE 481 (491)
T ss_dssp HHHHHHCCCCTTCCHHHHGGGTC--
T ss_pred HHHHheecCCCCCCHHHHHHHhCCC
Confidence 9888999999999999999988554
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=282.83 Aligned_cols=399 Identities=13% Similarity=0.078 Sum_probs=275.2
Q ss_pred chHHHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHH
Q 010317 27 NKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAAT 106 (513)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~ 106 (513)
++.++.......+..+..+++...+++..|.+.+++ .++++.+++.+++.++..++++++|+++||+|||+++.++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 445566667777888889999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCC
Q 010317 107 FLVGALAMGL----APNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGL 182 (513)
Q Consensus 107 ~~i~~~~~~~----~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 182 (513)
++++.+++++ +++++.++++|++.|++.+...+....++.|++|+++|+++.++.+....+|.++++.++..+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-- 179 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM-- 179 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH--
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 9999999999 9999999999999999999999999999999999999999999999999999888887764432
Q ss_pred CCCcc-hHHHHHhhhHHHHHHHH-HHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCC
Q 010317 183 PGNIN-WRIMLGLAAVPAAVIGV-GVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDD 260 (513)
Q Consensus 183 ~~~~~-Wr~~~~~~~~~~~i~~~-~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (513)
...+ ||+.|++.++..++..+ ..+++||+|+....+.+.++ . .+.+ ++ . ++ ++ +
T Consensus 180 -~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~--~~--~--~~-~~-------~ 235 (451)
T 1pw4_A 180 -AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY--------K-NDYP--DD--Y--NE-KA-------E 235 (451)
T ss_dssp -HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT--------C-CC------------------------
T ss_pred -HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh--------c-cccc--cc--c--hh-hh-------h
Confidence 2346 99999988877665444 45778999875321111000 0 0000 00 0 00 00 0
Q ss_pred CCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHh-CCCCCchhHHHHHHHHhHHHH
Q 010317 261 DQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKG-AGIHRKPVLFGINVVMGLAKT 339 (513)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~ 339 (513)
++ ....+..+++.++ ++.++...+..+......+....+.|.++++ .+.+.. .........+++..
T Consensus 236 ~~-----~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~ 302 (451)
T 1pw4_A 236 QE-----LTAKQIFMQYVLP-------NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD-KSSWAYFLYEYAGI 302 (451)
T ss_dssp --------CCTHHHHHHTSS-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHH-HHHHHHHHHHHHHH
T ss_pred cc-----cccccchHHHHHc-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHH
Confidence 00 0000001122221 1112222233333444456667788888876 343322 22334555677888
Q ss_pred HHHHHHHHHhhcc--CChhHHHhhhHHHH-HHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecc
Q 010317 340 FFVVLSALHLDKF--GRRPLLLLGSSGMV-GSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSE 416 (513)
Q Consensus 340 ~~~~~~~~~~d~~--grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 416 (513)
++.++.+++.||+ |||+.+..+..... .+.+++ ......+.+....... ..+++..+..+..+.+..|
T Consensus 303 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~ 373 (451)
T 1pw4_A 303 PGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY-----WMNPAGNPTVDMICMI----VIGFLIYGPVMLIGLHALE 373 (451)
T ss_dssp HHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT-----TSCCTTCHHHHHHHHH----HHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH-----HHhcccCHHHHHHHHH----HHHHHHhchHHHHHHHHHH
Confidence 9999999999999 99988766543322 221111 1111112222111111 1122222223344678899
Q ss_pred cCChhhHhhHHHHHHHHHHH-HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhe
Q 010317 417 IFPLRLRAQGSALAISVNRL-VSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYV 474 (513)
Q Consensus 417 l~P~~~R~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (513)
.+|++.|+++.|+.+.+.++ ++.+.+.....+.+..++...|++.+++.+++.+...+
T Consensus 374 ~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 374 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 88888888888888778888888888877777665543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=260.66 Aligned_cols=368 Identities=12% Similarity=0.094 Sum_probs=254.4
Q ss_pred HHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHH
Q 010317 34 ALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALA 113 (513)
Q Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~ 113 (513)
..+..+..+..+++....++..|.+++++|+++++.+++.+++.+++.++++++|+++||+|||+++.++.++++++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 107 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 34445556777888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred H---HhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhc-CCCCC----
Q 010317 114 M---GLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALS-GLPGN---- 185 (513)
Q Consensus 114 ~---~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~~---- 185 (513)
+ +++++++.++++|++.|++.|...+....+++|++|+++|+++.+..+....+|..+++.++..+. ...+.
T Consensus 108 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 187 (438)
T 3o7q_A 108 FWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQD 187 (438)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHH
T ss_pred HHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 9 899999999999999999999999999999999999999999999999999999999988766554 32211
Q ss_pred ------------------cchHHHHHhhhHHHHHHHHHHh--ccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHH
Q 010317 186 ------------------INWRIMLGLAAVPAAVIGVGVL--IMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDD 245 (513)
Q Consensus 186 ------------------~~Wr~~~~~~~~~~~i~~~~~~--~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 245 (513)
.+||+.|++.++..++..+..+ ..||+++.. ++ + +++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~-~----------~~~~-------- 245 (438)
T 3o7q_A 188 VLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HS-D----------AKQG-------- 245 (438)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CC-C----------SSTT--------
T ss_pred ccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---cc-c----------cccc--------
Confidence 0199999877766555444333 346665310 00 0 0000
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHH-HHhC-CCCC
Q 010317 246 MIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAV-FKGA-GIHR 323 (513)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~-~~~~ 323 (513)
.....++++++. +..+... ...+...........+.|.+ +++. +.+.
T Consensus 246 ------------------------~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 294 (438)
T 3o7q_A 246 ------------------------SFSASLSRLARI--RHWRWAV-----LAQFCYVGAQTACWSYLIRYAVEEIPGMTA 294 (438)
T ss_dssp ------------------------SHHHHHHHHTTC--SHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHSTTCCH
T ss_pred ------------------------chhhhHHHHHhC--hHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhccCCcch
Confidence 000112222221 1222211 11222223344556778888 7665 4333
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHh
Q 010317 324 KPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFS 403 (513)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (513)
. ..........++..++.++.+++.||+|||+.+..+.....++.+++... ..... .... .. ..++.
T Consensus 295 ~-~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~---~~-~g~~~ 361 (438)
T 3o7q_A 295 G-FAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-------GGHVG-LIAL---TL-CSAFM 361 (438)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------CHHHH-HHHH---HH-HHHHH
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-------CCcHH-HHHH---HH-HHHHH
Confidence 2 22234455677888899999999999999999887765554443333221 11111 1111 11 12222
Q ss_pred ccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHH
Q 010317 404 IGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLS-FGGTFFLLAGITTVGT 469 (513)
Q Consensus 404 ~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 469 (513)
....+..+.+..|.+|++ |+.+.++.. ++++++.+.+.....+.+..+ +...|++.+++.++..
T Consensus 362 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 362 SIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp TTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 333456677888999988 888888876 777777777777777777766 7777776655544443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.3e-27 Score=239.33 Aligned_cols=397 Identities=14% Similarity=0.062 Sum_probs=227.5
Q ss_pred hHHHHhh-----hCCCchhHHHHHHHHHHHHHHHHhhccccccc-cCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 010317 55 VLYIKED-----LEITEVQVEVLVGILNVFSLIGSLASGKTSDY-IGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRM 128 (513)
Q Consensus 55 ~~~~~~~-----~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr-~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~ 128 (513)
.++++++ +|.+..+.+++.+++.++..++++++|+++|| +|||+++.++.++..++.+++++++|++.++++|+
T Consensus 37 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (491)
T 4aps_A 37 LYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSII 116 (491)
T ss_dssp HHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHH
T ss_pred HHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3455555 99999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred HhhhhcccccccccceeeccCCCcc--cccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHH
Q 010317 129 IAGIGVGYSLMISPVYTAEISPTMK--RGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGV 206 (513)
Q Consensus 129 l~G~~~g~~~~~~~~~~~e~~p~~~--R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~ 206 (513)
+.|++.|...+....+++|++|+++ |+...+..+....+|..+++.++..+. ...+||+.|++.++..++..+..
T Consensus 117 l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 117 LIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ---EAAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 666777778888888888877765543 23589999998776655544433
Q ss_pred hcc-CCCc----hhHHhcCCHHHHHHHHHHh-----------------cCChHHHHHHH---HHH----HHHHhhcCCCC
Q 010317 207 LIM-PESP----RWLVMKSRYDEAKRVLLKV-----------------SDTEQEAKERL---DDM----IKAAKESSPSG 257 (513)
Q Consensus 207 ~~l-pEsp----~~l~~~~~~~~a~~~~~~~-----------------~~~~~~~~~~~---~~~----~~~~~~~~~~~ 257 (513)
++. |+.. +-...+.+.++.++..+.. ...+.+..... ... ..........
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 272 (491)
T 4aps_A 194 YFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSV- 272 (491)
T ss_dssp HHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcc-
Confidence 322 2110 0000111222322222210 00000000000 000 0000000000
Q ss_pred CCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhC-CCCCchhHHHHHHHHhH
Q 010317 258 PDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGA-GIHRKPVLFGINVVMGL 336 (513)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~ 336 (513)
...+. ..+ +..+....... .+...........+.|.+..+. +.+..... .......+
T Consensus 273 ----~~~~~-------~~~-------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 330 (491)
T 4aps_A 273 ----KVTST-------EHL-------RVVSYIPLFIA---AVLFWAIEEQGSVVLATFAAERVDSSWFPVS-WFQSLNPL 330 (491)
T ss_dssp ---------------------------CTTHHHHHHH---HHHHHHHHGGGGTHHHHHHHHSCCCSSSCSG-GGTTHHHH
T ss_pred ----cccHH-------HHH-------HHHHHHHHHHH---HHHHHHHHhhccHHHHHHHHHHhccCccCHH-HHhccchH
Confidence 00000 000 00010111111 1111111223334555555542 22211111 12344455
Q ss_pred HHHHHHHHHHHHhhccCChhHHH-----hhhHHHHHHHHHHHHHhhccC--CCCchhHHHHHHHHHHHHHHHHhccccce
Q 010317 337 AKTFFVVLSALHLDKFGRRPLLL-----LGSSGMVGSLLLLGIGSKILE--GSTPTVVVVLCIIAVCAFVSFFSIGLGPI 409 (513)
Q Consensus 337 ~~~~~~~~~~~~~d~~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (513)
...++..+.+++.||+|||+... .+...+..+.++++....... .....+...... ...++......+.
T Consensus 331 ~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~g~~~~~~~~~ 406 (491)
T 4aps_A 331 FIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSW----ALVILGEMLISPV 406 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHH----HHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHH----HHHHHHHHHHhHH
Confidence 66677788899999999986543 333333333333322211100 011112111111 1112222223455
Q ss_pred eeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhheecccCCCC
Q 010317 410 TWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGK 482 (513)
Q Consensus 410 ~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 482 (513)
.+.+..|.+|++.|+++.|+.+...++++.+.+...+... ..++...+.+++++++++.+..+++.++++++
T Consensus 407 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 407 GLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYN-AKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGG-GSSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999987777666544433 33556677777777777777766666666544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-27 Score=230.68 Aligned_cols=176 Identities=20% Similarity=0.239 Sum_probs=156.3
Q ss_pred HHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHH
Q 010317 36 LASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMG 115 (513)
Q Consensus 36 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~ 115 (513)
+..+..+..+++...+++..|.+.+++|.++++.+++.+++.++..+++++.|+++||+|||+++..+.++..++..+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 34455666777888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhh
Q 010317 116 LAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLA 195 (513)
Q Consensus 116 ~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~ 195 (513)
++++++.+++.|++.|++.+...+....++.|+.|+++|++..+..+....+|..+++.++..+. +..+||+.|++.
T Consensus 84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~~~~~~~~~~ 160 (375)
T 2gfp_A 84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD---TMWNWRACYLFL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS---CHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HhccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888776543 345899999988
Q ss_pred hHHHHHHHH-HHhccCCCch
Q 010317 196 AVPAAVIGV-GVLIMPESPR 214 (513)
Q Consensus 196 ~~~~~i~~~-~~~~lpEsp~ 214 (513)
++..++..+ ..+.+||+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 161 LVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHHHCcccCC
Confidence 877766655 4567788864
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=210.36 Aligned_cols=365 Identities=15% Similarity=0.161 Sum_probs=198.8
Q ss_pred HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHH---HHhcCcH-HHHHHHHHHhhh
Q 010317 57 YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALA---MGLAPNY-PFLIVGRMIAGI 132 (513)
Q Consensus 57 ~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~---~~~~~~~-~~l~~~R~l~G~ 132 (513)
++++++|+++.+.+++.+++.+++.++++++|+++||+|||+++.++..++.++... .++.+.. ..+...|.+.|+
T Consensus 33 ~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (417)
T 2cfq_A 33 WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI 112 (417)
T ss_dssp HHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999999999999999999999999999998887653221 1222211 113345666665
Q ss_pred hcccccccccceeeccCCC--cccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHhccC
Q 010317 133 GVGYSLMISPVYTAEISPT--MKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIMP 210 (513)
Q Consensus 133 ~~g~~~~~~~~~~~e~~p~--~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~~lp 210 (513)
+.|...+.......++.++ ++|+...+.......+|..+++.++..+. ..+||+.|++.+++.++..+..++.|
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~----~~~~~~~f~~~~~~~~~~~~~~~~~~ 188 (417)
T 2cfq_A 113 YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF----TINNQFVFWLGSGCALILAVLLFFAK 188 (417)
T ss_dssp STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHH----HHCSHHHHTTTTTTTTTHHHHSCSSC
T ss_pred HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH----HhchhHHHHHHHHHHHHHHHHHHHcC
Confidence 5554433333333334332 34555444444344455555555443332 13799999988777655544444444
Q ss_pred -CCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHH
Q 010317 211 -ESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRM 289 (513)
Q Consensus 211 -Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (513)
|+|+. .+.++ + .+ ++.+ + .....++++++ .+..+..
T Consensus 189 ~~~~~~----~~~~~------------~------------------~~-~~~~---~---~~~~~~~~~~~--~~~~~~~ 225 (417)
T 2cfq_A 189 TDAPSS----ATVAN------------A------------------VG-ANHS---A---FSLKLALELFR--QPKLWFL 225 (417)
T ss_dssp CCCSCS----SCSSS------------S------------------SS-SCCC---C---CCHHHHHHHTT--CHHHHHH
T ss_pred cccccc----ccccc------------c------------------cc-cccc---c---ccHHHHHHHhc--CCchhhH
Confidence 44320 00000 0 00 0000 0 00011222222 1222211
Q ss_pred HHHHHHHHHHhhhccchhhhccHHHHHHhCCCCC--chhH-HHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHH
Q 010317 290 LIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHR--KPVL-FGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMV 366 (513)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~ 366 (513)
.+.. +...........+.|.++.+.-... .... .....+..+...++.++.+++.||+|||+.+..+.....
T Consensus 226 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 226 SLYV-----IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMS 300 (417)
T ss_dssp HHHH-----HHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 1111 1111111222234565554321110 0111 122334455677788999999999999998876654443
Q ss_pred HHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHH-HHHHHHHHHHHHHHH
Q 010317 367 GSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALA-ISVNRLVSGVISMTF 445 (513)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~-~~~~~~~~~~~~~~~ 445 (513)
...+.++ . ....+...............+ .+..+.+++|.+|++.|+++.++. +..+++++.+.+...
T Consensus 301 ~~~~~~~-----~--~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~ 369 (417)
T 2cfq_A 301 VRIIGSS-----F--ATSALEVVILKTLHMFEVPFL----LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA 369 (417)
T ss_dssp HHHHHHT-----T--CCSHHHHHHHTTHHHHHHHHH----HHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHH
T ss_pred HHHHHHH-----H--hccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhH
Confidence 3322221 1 111111111111111111111 112356889999999999999985 667777666777666
Q ss_pred HHHHHhcccchhHHHHHHHHHHHHHhhheecccCCCCCH
Q 010317 446 LSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTL 484 (513)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 484 (513)
+.+.+..++...|.+.+++.+++.+..++..||+++.++
T Consensus 370 G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 370 GNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 666666666677888888888877776666777665543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-22 Score=208.08 Aligned_cols=150 Identities=13% Similarity=0.107 Sum_probs=130.2
Q ss_pred hHHHHhhhC------CCchhHHHHHHHHHHHHHHHHhhcccccccc-CchHHHHHHHHHHHHHHHHHHhcC-cHHHHHHH
Q 010317 55 VLYIKEDLE------ITEVQVEVLVGILNVFSLIGSLASGKTSDYI-GRRYTIVVAAATFLVGALAMGLAP-NYPFLIVG 126 (513)
Q Consensus 55 ~~~~~~~~~------~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~-GRr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~ 126 (513)
.+++++++| .+..+.+++.+++.++..++++++|+++||+ |||+++.++.+++.++.++.++++ +++.++++
T Consensus 36 ~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (524)
T 2xut_A 36 TPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTG 115 (524)
T ss_dssp HHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 346788899 9999999999999999999999999999999 999999999999999999999999 99999999
Q ss_pred HHHhhhhcccccccccceeeccCCCcccccccch---hhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHH
Q 010317 127 RMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSL---PEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIG 203 (513)
Q Consensus 127 R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~---~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~ 203 (513)
|++.|++.+...+....++.|++|+++|++..+. .+....+|..+++.+...+. +..+||+.|++.++..++..
T Consensus 116 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~---~~~g~~~~f~~~~~~~~~~~ 192 (524)
T 2xut_A 116 LFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL---KNFGAAVAFGIPGVLMFVAT 192 (524)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH---HTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999877776 66777788888777654443 24589999998877766554
Q ss_pred HHHh
Q 010317 204 VGVL 207 (513)
Q Consensus 204 ~~~~ 207 (513)
+..+
T Consensus 193 ~~~~ 196 (524)
T 2xut_A 193 VFFW 196 (524)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=4.7e-10 Score=112.88 Aligned_cols=152 Identities=14% Similarity=0.093 Sum_probs=121.8
Q ss_pred chhhHH-HHhhhCCCchhHHHHHHHHHHHHHHHHhhcccccccc--CchHHHHHHHHHHH-HHHHHHHhc--CcHHHHHH
Q 010317 52 SGAVLY-IKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYI--GRRYTIVVAAATFL-VGALAMGLA--PNYPFLIV 125 (513)
Q Consensus 52 ~~~~~~-~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~--GRr~~~~~~~~~~~-i~~~~~~~~--~~~~~l~~ 125 (513)
....|. +++.+|.+..+.++..+...++..++.++.|+++||+ |||+.+.++..+.. ++..+..+. .+.+.+.+
T Consensus 272 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (451)
T 1pw4_A 272 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI 351 (451)
T ss_dssp HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 334444 4555899999999999999999999999999999999 99999988887777 555555555 36777888
Q ss_pred HHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHH-HHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHH
Q 010317 126 GRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVL-GILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGV 204 (513)
Q Consensus 126 ~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~ 204 (513)
.-++.|++.+...+....++.|..|+++|+.+.++.+....+ |..+++.+...+. +..+|+..|++.++..++..+
T Consensus 352 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~---~~~g~~~~~~~~~~~~~~~~~ 428 (451)
T 1pw4_A 352 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV---DFFGWDGGFMVMIGGSILAVI 428 (451)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHH
Confidence 888999988888877788999999999999999999888888 8888776654443 234799998887776665555
Q ss_pred HH
Q 010317 205 GV 206 (513)
Q Consensus 205 ~~ 206 (513)
..
T Consensus 429 ~~ 430 (451)
T 1pw4_A 429 LL 430 (451)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.7e-09 Score=110.24 Aligned_cols=159 Identities=14% Similarity=0.077 Sum_probs=103.9
Q ss_pred hhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhc----CcHHHHHHHHH-
Q 010317 54 AVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLA----PNYPFLIVGRM- 128 (513)
Q Consensus 54 ~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~----~~~~~l~~~R~- 128 (513)
-.+.+.++.+.+..+.........+...++.++++++.||+|||+.++.+..+..++.+..+.. ......++.-+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 378 (491)
T 4gc0_A 299 YAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLF 378 (491)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 3456777788777777777778888899999999999999999999999988887776655432 12222222222
Q ss_pred -HhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcC---CCCCcchHHHHHhhhHHHHHHHH
Q 010317 129 -IAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSG---LPGNINWRIMLGLAAVPAAVIGV 204 (513)
Q Consensus 129 -l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~---~~~~~~Wr~~~~~~~~~~~i~~~ 204 (513)
..+++.+ ..++...|.+|.+|++.|+..+++......+|..++......+.. .....++.+.|++.++.+++..+
T Consensus 379 ~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i 457 (491)
T 4gc0_A 379 YVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAAL 457 (491)
T ss_dssp HHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 2222222 234556789999999999999998877766665554433222110 00112445566666665555444
Q ss_pred -HHhccCCCc
Q 010317 205 -GVLIMPESP 213 (513)
Q Consensus 205 -~~~~lpEsp 213 (513)
.++++|||.
T Consensus 458 ~~~~~~PETk 467 (491)
T 4gc0_A 458 FMWKFVPETK 467 (491)
T ss_dssp HHHHHCCCCT
T ss_pred HHHheecCCC
Confidence 467899995
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=4.8e-10 Score=111.84 Aligned_cols=146 Identities=10% Similarity=0.023 Sum_probs=110.5
Q ss_pred chhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhccccccccccee
Q 010317 66 EVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYT 145 (513)
Q Consensus 66 ~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~ 145 (513)
..+.++..++..++..++.++.|+++||+|||+.+..+.++.++.....++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777888899999999999999999999999988888877778888888888888888887666555567899
Q ss_pred eccCCCcccccccch-hhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHH-HhccCCCch
Q 010317 146 AEISPTMKRGFLTSL-PEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVG-VLIMPESPR 214 (513)
Q Consensus 146 ~e~~p~~~R~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~-~~~lpEsp~ 214 (513)
+|.+|++.||...+. ++....+|..+++.+...+. +..+++..|.+.++..++..+. .+..||.++
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~---~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY---ESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH---HHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 999999999998877 36566677766665543332 1346888888777766655544 445666554
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-09 Score=109.29 Aligned_cols=141 Identities=13% Similarity=-0.067 Sum_probs=108.7
Q ss_pred HH-HHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhc
Q 010317 56 LY-IKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGV 134 (513)
Q Consensus 56 ~~-~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~ 134 (513)
++ +++.+|.+..+.++..+.+.++..++.++.|+++||+|||+.+.++.++..++.++..+.++...++.. ++.|++.
T Consensus 283 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~ 361 (438)
T 3o7q_A 283 RYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFM 361 (438)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHH
T ss_pred HHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHH
Confidence 45 566679999999999999999999999999999999999999999999999999888888887765554 8888998
Q ss_pred ccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcc-hHHHHHhhhHHHHHH
Q 010317 135 GYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNIN-WRIMLGLAAVPAAVI 202 (513)
Q Consensus 135 g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-Wr~~~~~~~~~~~i~ 202 (513)
+...+....+..|..|++ |+...++.. ...+|..+++.+...+. +..+ ++..|++.++..++.
T Consensus 362 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~---~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 362 SIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVS---DAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp TTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHH---HHHTSSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHH---HHhcchHHHHHHHHHHHHHH
Confidence 888888888889999866 777777655 33455555555433332 1335 777776654443333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1e-07 Score=97.00 Aligned_cols=163 Identities=13% Similarity=0.059 Sum_probs=99.7
Q ss_pred cchhhhccHHHHHHh------CCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhc-cCChhHHHhhhHHHHHHHHHHHHHh
Q 010317 304 GNDAVIYYTPAVFKG------AGIHRKPVLFGINVVMGLAKTFFVVLSALHLDK-FGRRPLLLLGSSGMVGSLLLLGIGS 376 (513)
Q Consensus 304 ~~~~~~~~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~grr~~~~~~~~~~~~~~~~~~~~~ 376 (513)
+++....+.+.++.+ .+.+.. ....+.....++..++.++.|++.|| +|||+.+..+.....++.++.+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~-- 104 (491)
T 4aps_A 28 SYYGMRAILLYYMWFLISTGDLHITRA-TAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL-- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHhccchhhcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH--
Confidence 344455556666554 343322 23334556677888899999999999 89999998876655544444332
Q ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhh--HhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010317 377 KILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRL--RAQGSALAISVNRLVSGVISMTFLSISHRLSF 454 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~--R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (513)
. .+.+......+... .......+....+.+|.+|++. |+.+.++.+...+++..+.+.....+.+..++
T Consensus 105 ---~--~~~~~~~~~~~l~g----~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 175 (491)
T 4aps_A 105 ---P--FGASALFGSIILII----IGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGY 175 (491)
T ss_dssp ---C--CSTTHHHHHHHHHH----HHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred ---h--hhHHHHHHHHHHHH----HHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 1 11122111111111 1111122345678899999988 77778777788887776766666666677778
Q ss_pred chhHHHHHHHHHHHHHhhheeccc
Q 010317 455 GGTFFLLAGITTVGTIFFYVFLPE 478 (513)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~pe 478 (513)
.+.|++.++..+++.+...+..|+
T Consensus 176 ~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 176 HVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcc
Confidence 888888777666665554443343
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.8e-08 Score=98.67 Aligned_cols=166 Identities=12% Similarity=0.085 Sum_probs=105.1
Q ss_pred chhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCc
Q 010317 305 NDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTP 384 (513)
Q Consensus 305 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (513)
........|.+.++.+.+... .........+...++.++.+++.||+|||+.+..+......+.++.+... +
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-------~ 87 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGA-VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS-------S 87 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHH-HHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH-------H
T ss_pred HHHHhhhhHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc-------c
Confidence 344444566666665544433 23345556777888899999999999999998887766655555444321 1
Q ss_pred hhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Q 010317 385 TVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGI 464 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (513)
.+....... ..+.......+....+.+|.+|++.|+.+.++.+....++..+.+.....+.+..++...+++.+++
T Consensus 88 ~~~l~~~~~----l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 88 LTVLIAASA----MQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 111111111 1111111222345667899999999999999998888876666655555544445666778888777
Q ss_pred HHHHHHhhheecccCCCC
Q 010317 465 TTVGTIFFYVFLPETKGK 482 (513)
Q Consensus 465 ~~~~~~~~~~~~pet~~~ 482 (513)
.++..+...+.+||++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHCcccCCC
Confidence 777766566777887544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.7e-07 Score=92.91 Aligned_cols=160 Identities=13% Similarity=0.089 Sum_probs=96.2
Q ss_pred cchhhhccHHHHHHh-CC------CCCchhHHHHHHHHhHHHHHHHHHHHHHhhcc-CChhHHHhhhHHHHHHHHHHHHH
Q 010317 304 GNDAVIYYTPAVFKG-AG------IHRKPVLFGINVVMGLAKTFFVVLSALHLDKF-GRRPLLLLGSSGMVGSLLLLGIG 375 (513)
Q Consensus 304 ~~~~~~~~~p~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-grr~~~~~~~~~~~~~~~~~~~~ 375 (513)
+.+....++|.++.+ .+ .+.... ........++..++.++.|++.||+ |||+.+..+.+...++.++.+..
T Consensus 27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~ 105 (524)
T 2xut_A 27 SFYGMRNILTPFLMTALLLSIPEELRGAVA-KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF 105 (524)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCSSSTTTTTH-HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccccccccCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh
Confidence 344455566666653 34 333322 2344556677788889999999999 99999887766555554444321
Q ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Q 010317 376 SKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSAL---AISVNRLVSGVISMTFLSISHRL 452 (513)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~ 452 (513)
. .+.+...... ...+.......+....+.+|.+|++.|+.+.+. .+...+++..+.+.....+.+..
T Consensus 106 ~------~~~~~~~~~~----~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (524)
T 2xut_A 106 E------HSVQGFYTGL----FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF 175 (524)
T ss_dssp S------SCHHHHHHHH----HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred c------ccHHHHHHHH----HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 0112111111 111222222334556788999999999876665 66777776666665555556666
Q ss_pred ccchhHHHHHHHHHHHHHhhhe
Q 010317 453 SFGGTFFLLAGITTVGTIFFYV 474 (513)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~ 474 (513)
++.+.|++.+++.+++.+...+
T Consensus 176 g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 176 GAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888777776665554433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 513 | ||||
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 8e-15 |
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 74.0 bits (180), Expect = 8e-15
Identities = 53/437 (12%), Positives = 122/437 (27%), Gaps = 58/437 (13%)
Query: 56 LYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMG 115
+++ + I++ ++ +++FSL+ G SD +G R ++ LV
Sbjct: 32 IWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF 91
Query: 116 LAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTM--KRGFLTSLPEVFIVLGILSGY 173
+ P L ++ I G L A K ++ + G+
Sbjct: 92 IFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGW 151
Query: 174 VFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVS 233
++ G+ IN + + L + A ++ V + + A
Sbjct: 152 ALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANH------ 205
Query: 234 DTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAA 293
+ + L L P + + +
Sbjct: 206 ------------------------------------SAFSLKLALELFRQPKLWFLSLYV 229
Query: 294 VGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFG 353
+G++ F V G T +L+A +
Sbjct: 230 IGVSCTYDVF---------DQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAP 280
Query: 354 RRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVY 413
+ G + ++ + ++ + +T + VV+ F L + Y
Sbjct: 281 LIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKT----LHMFEVPFLLVGCFKY 336
Query: 414 SSEIFPLRLRAQGSALAISVNRLVSGVISMTFLS-ISHRLSFGGTFFLLAGITTVGTIFF 472
+ F +R A + + ++ + + + F G + +L + T+
Sbjct: 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLIS 396
Query: 473 YVFLPETKGKTLEEMQA 489
L +L Q
Sbjct: 397 VFTLSGPGPLSLLRRQV 413
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 513 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.89 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.16 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.02 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.2e-34 Score=287.09 Aligned_cols=410 Identities=12% Similarity=0.052 Sum_probs=268.6
Q ss_pred CCchHHHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHH
Q 010317 25 GLNKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAA 104 (513)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~ 104 (513)
.+++++|.+..+.++.++..++|+..++...|.++ |+|+|++|.+++.+++.+++.++++++|+++||+|||+++.++.
T Consensus 18 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~ 96 (447)
T d1pw4a_ 18 TYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL 96 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 34566787777888888999999999999999876 57999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----CcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhc
Q 010317 105 ATFLVGALAMGLA----PNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALS 180 (513)
Q Consensus 105 ~~~~i~~~~~~~~----~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~ 180 (513)
++.+++.++++++ +++..+++.|++.|++.|...+....+++|++|+++|++++++.+.+..+|..+++.+.....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 176 (447)
T d1pw4a_ 97 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 176 (447)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh
Confidence 9999999988876 578899999999999999999999999999999999999999999999998877776544332
Q ss_pred CCCCCcchHHHHHhhhHHHHHHHH-HHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCC
Q 010317 181 GLPGNINWRIMLGLAAVPAAVIGV-GVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPD 259 (513)
Q Consensus 181 ~~~~~~~Wr~~~~~~~~~~~i~~~-~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (513)
. ...+||+.|++.++..++..+ .+++++|+|+........ +. +.+..+..+ ++ .+
T Consensus 177 ~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~---~~-~~------- 232 (447)
T d1pw4a_ 177 A--WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE-EY----------KNDYPDDYN---EK-AE------- 232 (447)
T ss_dssp H--HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT-TT----------CCC---------------------
T ss_pred h--hhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhh-hh----------hhhcccchh---hc-cc-------
Confidence 1 123799988887776655544 455667776532111110 00 000000000 00 00
Q ss_pred CCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHH
Q 010317 260 DDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKT 339 (513)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (513)
++....+..++..++ .+.++......+......+....+.|.++.+.................+...
T Consensus 233 ------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (447)
T d1pw4a_ 233 ------QELTAKQIFMQYVLP-------NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGI 299 (447)
T ss_dssp ---------CCTHHHHHHTSS-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHH
T ss_pred ------cccchhhHHHHHHHc-------CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhh
Confidence 000000111121111 1222222222333334445566777777765433333333445556677888
Q ss_pred HHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCC
Q 010317 340 FFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFP 419 (513)
Q Consensus 340 ~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P 419 (513)
++.++.+++.||.+||.................. ..........+........ .++...+..+..+.+.+|.+|
T Consensus 300 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~p 373 (447)
T d1pw4a_ 300 PGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI--VYWMNPAGNPTVDMICMIV----IGFLIYGPVMLIGLHALELAP 373 (447)
T ss_dssp HHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH--HTTSCCTTCHHHHHHHHHH----HHHHHTHHHHHHHHHHHHTSC
T ss_pred hhhhhhhhhhhhccccccccccchhHHHHHHHHH--HHHhcccccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999988755443322222221111 1111112222221111111 122222333455678899999
Q ss_pred hhhHhhHHHHHHHHHHHHHHHH-HHHHHHHHHhcccchhHHHHHHHHHHHHHhhheeccc
Q 010317 420 LRLRAQGSALAISVNRLVSGVI-SMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPE 478 (513)
Q Consensus 420 ~~~R~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 478 (513)
++.|+++.|+.+.++++++.+. +.....+.+..++...+++.+++.+++.++.+++.++
T Consensus 374 ~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 374 KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999866554 4555667777777777887777777776665555443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=3.2e-23 Score=203.75 Aligned_cols=377 Identities=15% Similarity=0.152 Sum_probs=215.2
Q ss_pred hcccccchhhH-HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHH-
Q 010317 46 YDIGVMSGAVL-YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFL- 123 (513)
Q Consensus 46 ~~~~~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l- 123 (513)
+..+...+.+| ++++++|+|+++.|++.+++.+++.++++++|+++||+|||++++++..+..++....++..+....
T Consensus 21 ~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (417)
T d1pv7a_ 21 FIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQ 100 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 33444555666 4788899999999999999999999999999999999999999999999999999988888776654
Q ss_pred ---HHHHHHhhhhcccccccccceeeccCCC--cccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhH-
Q 010317 124 ---IVGRMIAGIGVGYSLMISPVYTAEISPT--MKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAV- 197 (513)
Q Consensus 124 ---~~~R~l~G~~~g~~~~~~~~~~~e~~p~--~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~- 197 (513)
.+.+.+.+.+.+...........+..++ +++....+........|..+++.++..+. ..+|++.+.....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~ 176 (417)
T d1pv7a_ 101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF----TINNQFVFWLGSGC 176 (417)
T ss_dssp TTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccc----cccccccccchhhH
Confidence 3445555554444443333333333322 23444555555556666666665554443 2356655555444
Q ss_pred HHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhh
Q 010317 198 PAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKD 277 (513)
Q Consensus 198 ~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (513)
..+...+..+.+||+|+....+ ++.. +. .. . .......+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------------------~~-~~-~-----------~~~~~~~~ 215 (417)
T d1pv7a_ 177 ALILAVLLFFAKTDAPSSATVA---NAVG-------------------------AN-HS-A-----------FSLKLALE 215 (417)
T ss_dssp HHHHHHHHHSSCCCSCSSSCSS---HHHH-------------------------SC-CC-C-----------CCHHHHHH
T ss_pred HHHHHHHHHHHhcccccchhhh---hhhh-------------------------hh-cc-c-----------cccccccc
Confidence 4444555567778877521100 0000 00 00 0 00000111
Q ss_pred hhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhCCCCC---chhHHHHHHHHhHHHHHHHHHHHHHhhccCC
Q 010317 278 LILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHR---KPVLFGINVVMGLAKTFFVVLSALHLDKFGR 354 (513)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gr 354 (513)
... .+..+............. .......+.......... ............+...++..+.+++.||.||
T Consensus 216 ~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~ 288 (417)
T d1pv7a_ 216 LFR--QPKLWFLSLYVIGVSCTY-----DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGG 288 (417)
T ss_dssp HTT--SSHHHHHHHHHHHHHHHH-----HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCH
T ss_pred ccc--cccccchhhhhHHHHHHH-----Hhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhccccc
Confidence 111 111111111111111110 111111111111111110 0111223344556677788889999999999
Q ss_pred hhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHH-
Q 010317 355 RPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISV- 433 (513)
Q Consensus 355 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~- 433 (513)
|+.+..+...+..+.+.+.. ..+.+.............. ...+..+.+.+|.+|++.|+++.|+...+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (417)
T d1pv7a_ 289 KNALLLAGTIMSVRIIGSSF-------ATSALEVVILKTLHMFEVP----FLLVGCFKYITSQFEVRFSATIYLVCFCFF 357 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-------CCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHSCGGGHHHHHHHHHTTT
T ss_pred ccchhhhHHHHHHhhhcccc-------ccccchhhHHHHHHHHHHH----HHHHHHHHHHHHHCCHhHHHHHHHHHHHHH
Confidence 99988776555444433331 1222222222111111111 12234567889999999999999987655
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhheecccCCCCCHH
Q 010317 434 NRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTLE 485 (513)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~ 485 (513)
..++..+.+.....+.+..++...+++.+++.++..++..+.+++++..+++
T Consensus 358 ~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 409 (417)
T d1pv7a_ 358 KQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLL 409 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchh
Confidence 4465666777777788888888889888888888877777777777666653
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=6.3e-12 Score=121.84 Aligned_cols=146 Identities=10% Similarity=0.023 Sum_probs=118.7
Q ss_pred hCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhcccccccc
Q 010317 62 LEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMIS 141 (513)
Q Consensus 62 ~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~ 141 (513)
.+.+....+...+...++..++..+.+++.||+|||+.+.++.++..++....++.++.+.+++.-++.|++.+...+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 333 (417)
T d1pv7a_ 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 33455566777888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeccCCCcccccccchh-hHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHH-HhccC
Q 010317 142 PVYTAEISPTMKRGFLTSLP-EVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVG-VLIMP 210 (513)
Q Consensus 142 ~~~~~e~~p~~~R~~~~~~~-~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~-~~~lp 210 (513)
..++.|..|++.|++..+.. +....+|..+++.+...+. +..||+..|++.++..++..+. .+.++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~---~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY---ESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999998864 4556677777665543332 2458999988877766655554 34444
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=1.2e-09 Score=107.21 Aligned_cols=162 Identities=14% Similarity=0.094 Sum_probs=98.5
Q ss_pred ccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHH
Q 010317 310 YYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVV 389 (513)
Q Consensus 310 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
...|.+ ++.+.+..... .+.....++..++.++.|+++||+|||+.+..+.+...++.++.+....... .. ....
T Consensus 46 ~~~p~~-~~~g~s~~~~g-~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~ 120 (447)
T d1pw4a_ 46 LAMPYL-VEQGFSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS-SI--AVMF 120 (447)
T ss_dssp HHHHHT-TSSTTCSSCHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS-SS--SHHH
T ss_pred HHHHHH-HHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhh-hH--HHHH
Confidence 344543 44555544433 3455667778889999999999999999998887666666555554322111 11 1111
Q ss_pred HHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcccchhHHHHHHHHHHH
Q 010317 390 LCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISH-RLSFGGTFFLLAGITTVG 468 (513)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 468 (513)
...... +.+.....+....+.+|.+|++.|+.+.|+.+....++..+.+........ ..++.+.+++.+.+.++.
T Consensus 121 ~~~~~~----g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 196 (447)
T d1pw4a_ 121 VLLFLC----GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILV 196 (447)
T ss_dssp HHHHHH----HHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHH
T ss_pred HHHHHH----HHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHH
Confidence 111111 111111223445688999999999999999988888766555544443333 335667777777777776
Q ss_pred HHhhheecccCC
Q 010317 469 TIFFYVFLPETK 480 (513)
Q Consensus 469 ~~~~~~~~pet~ 480 (513)
.+..+++.+|+.
T Consensus 197 ~~~~~~~~~~~~ 208 (447)
T d1pw4a_ 197 ALFAFAMMRDTP 208 (447)
T ss_dssp HHHHHHHCCCSS
T ss_pred HHHHHHhcccch
Confidence 666666665543
|