Citrus Sinensis ID: 010322
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 513 | 2.2.26 [Sep-21-2011] | |||||||
| P93111 | 552 | Glutamyl-tRNA reductase 1 | N/A | no | 0.968 | 0.900 | 0.835 | 0.0 | |
| P42804 | 543 | Glutamyl-tRNA reductase 1 | yes | no | 0.980 | 0.926 | 0.808 | 0.0 | |
| P49294 | 530 | Glutamyl-tRNA reductase 2 | no | no | 0.949 | 0.918 | 0.798 | 0.0 | |
| P49295 | 542 | Glutamyl-tRNA reductase 2 | N/A | no | 0.910 | 0.861 | 0.765 | 0.0 | |
| Q42843 | 527 | Glutamyl-tRNA reductase 1 | N/A | no | 0.941 | 0.916 | 0.718 | 0.0 | |
| Q96563 | 465 | Glutamyl-tRNA reductase 2 | N/A | no | 0.902 | 0.995 | 0.731 | 0.0 | |
| O65796 | 535 | Glutamyl-tRNA reductase 3 | N/A | no | 0.906 | 0.869 | 0.708 | 0.0 | |
| P0C587 | 537 | Glutamyl-tRNA reductase, | yes | no | 0.906 | 0.865 | 0.734 | 0.0 | |
| A2Z928 | 537 | Glutamyl-tRNA reductase, | N/A | no | 0.906 | 0.865 | 0.734 | 0.0 | |
| Q117I4 | 431 | Glutamyl-tRNA reductase O | yes | no | 0.826 | 0.983 | 0.465 | 1e-102 |
| >sp|P93111|HEM11_CUCSA Glutamyl-tRNA reductase 1, chloroplastic OS=Cucumis sativus GN=HEMA1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/516 (83%), Positives = 460/516 (89%), Gaps = 19/516 (3%)
Query: 16 CKPNRNERNLQQSRRGV-----VRCEVA----------VDP---SSASALEQLKASAPDR 57
CK R R L Q R GV +CE+A +DP S+ SALEQLK SA DR
Sbjct: 38 CKSIRTRRILFQ-RTGVSSFTPFKCELASSDVLVQNDEIDPPKSSNLSALEQLKTSAVDR 96
Query: 58 YTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEI 117
YTKERSSIVVIGLS+HT PVEMREKLAIPEAEWPRAIGELC LNHIEEAAVLSTCNRMEI
Sbjct: 97 YTKERSSIVVIGLSIHTTPVEMREKLAIPEAEWPRAIGELCGLNHIEEAAVLSTCNRMEI 156
Query: 118 YVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEG 177
YVVALSQHRGVKEVTEWMSKTSGIPV+E+C+HRFLLYN DATQH+FEVSAGLDSLVLGEG
Sbjct: 157 YVVALSQHRGVKEVTEWMSKTSGIPVSEICQHRFLLYNNDATQHIFEVSAGLDSLVLGEG 216
Query: 178 QILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALM 237
QILAQVKQVVKVGQGV GFGRNISGLFKHAI+VGKRVRTETNIAAGAVSVSSAAVELALM
Sbjct: 217 QILAQVKQVVKVGQGVAGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALM 276
Query: 238 KLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIY 297
KLPE SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERV AI EE+ VEIIY
Sbjct: 277 KLPEPSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVTAIREEMKDVEIIY 336
Query: 298 KPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSC 357
KPL+EMLSC A+ADV+FTSTASE+ LF K+ V+DLPPV VGGLRLFIDISVPRNVG+C
Sbjct: 337 KPLTEMLSCTAEADVIFTSTASESLLFTKEQVKDLPPVGHDVGGLRLFIDISVPRNVGAC 396
Query: 358 VADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKL 417
+ ++E RVYNVDDLKEVVAANKEDRLRKAMEAQ+IITEESKQF AWRDSLETVPTIKKL
Sbjct: 397 INNLEDVRVYNVDDLKEVVAANKEDRLRKAMEAQSIITEESKQFEAWRDSLETVPTIKKL 456
Query: 418 RAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTL 477
RAYAERIR AEL+KCLSKMGDDI KKTRRAVDDLSRGI+NKLLHGPMQHLRCDGSDSRTL
Sbjct: 457 RAYAERIRTAELEKCLSKMGDDIPKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTL 516
Query: 478 DETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQK 513
ETLENMHALNRMF LET+ ++ EQK+RAK+EQNQK
Sbjct: 517 SETLENMHALNRMFSLETEIAVLEQKIRAKVEQNQK 552
|
Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). Cucumis sativus (taxid: 3659) EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: 7EC: 0 |
| >sp|P42804|HEM11_ARATH Glutamyl-tRNA reductase 1, chloroplastic OS=Arabidopsis thaliana GN=HEMA1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/516 (80%), Positives = 457/516 (88%), Gaps = 13/516 (2%)
Query: 5 QSQLG-QQIRVACKPNRNERNLQQSRRGVVRCEVAVDPSSASA------LEQLKASAPDR 57
Q+ LG +RV K NR R L Q RCE++ SAS LEQLK SA DR
Sbjct: 34 QTPLGLNGVRVLPKNNRTRRGLIQK----ARCELSASSDSASNAASISALEQLKNSAADR 89
Query: 58 YTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEI 117
YTKERSSIVVIGLS+HTAPVEMREKLAIPEAEWPRAI ELC LNHIEEAAVLSTCNRMEI
Sbjct: 90 YTKERSSIVVIGLSIHTAPVEMREKLAIPEAEWPRAIAELCGLNHIEEAAVLSTCNRMEI 149
Query: 118 YVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEG 177
YV+ALSQHRGVKEVTEWMSKTSGIPV+E+C+HRFLLYNKDATQH+FEVSAGLDSLVLGEG
Sbjct: 150 YVLALSQHRGVKEVTEWMSKTSGIPVSEICQHRFLLYNKDATQHIFEVSAGLDSLVLGEG 209
Query: 178 QILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALM 237
QILAQVKQVVKVGQGV GFGRNISGLFKHAI+VGKRVRTETNIA+GAVSVSSAAVELALM
Sbjct: 210 QILAQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRTETNIASGAVSVSSAAVELALM 269
Query: 238 KLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIY 297
KLP+SS+ +ARM VIGAGKMGKLVIKHL+AKGCTK+VVVNRSEERV+AI EE+ G+EIIY
Sbjct: 270 KLPQSSNVSARMCVIGAGKMGKLVIKHLMAKGCTKVVVVNRSEERVSAIREEMPGIEIIY 329
Query: 298 KPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSC 357
+PL EML+CA++ADVVFTSTASE PLFLK+HV++LP VGGLR F+DISVPRNVGSC
Sbjct: 330 RPLDEMLACASEADVVFTSTASETPLFLKEHVENLPQASPEVGGLRHFVDISVPRNVGSC 389
Query: 358 VADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKL 417
V +VETARVYNVDDLKEVVAANKEDR+RKAMEAQ IITEES QF AWRDSLETVPTIKKL
Sbjct: 390 VGEVETARVYNVDDLKEVVAANKEDRMRKAMEAQTIITEESTQFEAWRDSLETVPTIKKL 449
Query: 418 RAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTL 477
RAYAERIRVAEL+KC+SKMGDDI+KKT RAVDDLSRGI+N+ LHGPMQHLRCDGSDSRTL
Sbjct: 450 RAYAERIRVAELEKCMSKMGDDINKKTTRAVDDLSRGIVNRFLHGPMQHLRCDGSDSRTL 509
Query: 478 DETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQK 513
ETLENMHALNRM+GLE D + E+K++A EQ QK
Sbjct: 510 SETLENMHALNRMYGLEKD--ILEEKLKAMAEQQQK 543
|
Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 7 EC: 0 |
| >sp|P49294|HEM12_ARATH Glutamyl-tRNA reductase 2, chloroplastic OS=Arabidopsis thaliana GN=HEMA2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/505 (79%), Positives = 443/505 (87%), Gaps = 18/505 (3%)
Query: 12 IRVACKPNRNERNLQQSRRGVVRCEVAVDPS----SASALEQLKASAPDRYTKERSSIVV 67
IR NRN+R L Q RCE++ PS S SALEQLK SA DRYTKERSSIVV
Sbjct: 37 IRALPMNNRNKRGLIQR----ARCEIS--PSNKAASISALEQLKTSAIDRYTKERSSIVV 90
Query: 68 IGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRG 127
IGLS+HTAPVEMREKLAIPEAEWPRAI ELC LNHIEEAAVLSTCNRMEIYV+ALSQHRG
Sbjct: 91 IGLSIHTAPVEMREKLAIPEAEWPRAIAELCGLNHIEEAAVLSTCNRMEIYVLALSQHRG 150
Query: 128 VKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVV 187
VKEVTEWMSKTSGIPV+E+C+HRFLLYNKD TQH+FEVSAGLDSLVLGEGQILAQVKQVV
Sbjct: 151 VKEVTEWMSKTSGIPVSEICQHRFLLYNKDVTQHIFEVSAGLDSLVLGEGQILAQVKQVV 210
Query: 188 KVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALMKLPESSHA-T 246
KVGQGV GFGRNISGLFKHAI+VGKRVRTETNIAAGAVSVSSAAVELALMKLPESSHA +
Sbjct: 211 KVGQGVNGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPESSHASS 270
Query: 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL-NGVEIIYKPLSEMLS 305
ARMLV+GAGKMGKLVIKHLVAKGCTKMVVVNRSEE+VAA+ E+ GVEIIYKPL EMLS
Sbjct: 271 ARMLVVGAGKMGKLVIKHLVAKGCTKMVVVNRSEEKVAAVRNEMPPGVEIIYKPLDEMLS 330
Query: 306 CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETAR 365
CAA+ADVVFTSTASE PLFLK+ V+ LPPV A RLF+DISVPRNVGSCVA+++ R
Sbjct: 331 CAAEADVVFTSTASETPLFLKEQVETLPPVRDA----RLFVDISVPRNVGSCVAEIDGTR 386
Query: 366 VYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERIR 425
V+NVDDLKEVVAANKEDR+RKAM+AQAIIT+ESK F AWRDSLETVPTIKKLR Y ERI
Sbjct: 387 VFNVDDLKEVVAANKEDRVRKAMDAQAIITDESKHFEAWRDSLETVPTIKKLRGYTERII 446
Query: 426 VAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTLDETLENMH 485
AE++K L KMG D++KK R+ VDDL RGI+NKLLHGPMQHLRCDG+DSRTL ETL+NM
Sbjct: 447 AAEIEKSLPKMGIDMNKKMRKTVDDLIRGIVNKLLHGPMQHLRCDGNDSRTLSETLDNMQ 506
Query: 486 ALNRMFGLETDTSLFEQKVRAKIEQ 510
ALNRM+GL D + E+K+RAK+E+
Sbjct: 507 ALNRMYGL--DAEILEEKIRAKVEK 529
|
Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 7 EC: 0 |
| >sp|P49295|HEM12_CUCSA Glutamyl-tRNA reductase 2, chloroplastic OS=Cucumis sativus GN=HEMA2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/469 (76%), Positives = 409/469 (87%), Gaps = 2/469 (0%)
Query: 45 SALEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIE 104
SALE LK S+ +RYTKER SIVVIGL+VHTAPVE+REKLAIPEA+WP IGELC LNHIE
Sbjct: 76 SALELLKTSSVNRYTKERISIVVIGLNVHTAPVELREKLAIPEAQWPPGIGELCALNHIE 135
Query: 105 EAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFE 164
EAAVLSTCNR+EIYVVALSQHRGVKEVTEWMSK SGIP++ELC+HR LLYN DATQHLFE
Sbjct: 136 EAAVLSTCNRIEIYVVALSQHRGVKEVTEWMSKRSGIPISELCKHRVLLYNTDATQHLFE 195
Query: 165 VSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGA 224
VSAGLDSLVLGEGQILAQVK VVK GQGV GF R ISGLFKHAI+VGKRVRTETNI++G+
Sbjct: 196 VSAGLDSLVLGEGQILAQVKHVVKTGQGVAGFDRKISGLFKHAITVGKRVRTETNISSGS 255
Query: 225 VSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVA 284
SVSSAAVELA KLPESS+ATA+++V+GAGKMGKLVIKHLVAKGC KMVVVNR+++ V
Sbjct: 256 FSVSSAAVELAQKKLPESSYATAKVMVVGAGKMGKLVIKHLVAKGCRKMVVVNRTQDSVD 315
Query: 285 AICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRL 344
A+ EEL VEIIYKPLS++L+CA++ADV+FT TAS+ PLF K+HV LPP G RL
Sbjct: 316 AV-EELKDVEIIYKPLSKILACASEADVIFTCTASKTPLFTKEHVAMLPPAGTETGR-RL 373
Query: 345 FIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAW 404
F+DISVPRNV V+D+ET V+NVDDLKEVVAANKEDRL+K EAQ+II EE +F AW
Sbjct: 374 FVDISVPRNVEQRVSDLETVSVFNVDDLKEVVAANKEDRLKKVQEAQSIIGEEINKFEAW 433
Query: 405 RDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPM 464
RDSLETVPTIKK RAY ERIR AELDKCLSKMG+DI KK + A++DLS GI NKLLHGP+
Sbjct: 434 RDSLETVPTIKKFRAYVERIRAAELDKCLSKMGEDIPKKKKVAINDLSLGIANKLLHGPI 493
Query: 465 QHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQK 513
QHLRCDG+DSRTLDE L+NMHA+NRMF LETD S+ E+K+RAK+E+ QK
Sbjct: 494 QHLRCDGNDSRTLDEILQNMHAINRMFDLETDLSVLEEKIRAKVERGQK 542
|
Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). Cucumis sativus (taxid: 3659) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 7 EC: 0 |
| >sp|Q42843|HEM11_HORVU Glutamyl-tRNA reductase 1, chloroplastic OS=Hordeum vulgare GN=HEMA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/491 (71%), Positives = 419/491 (85%), Gaps = 8/491 (1%)
Query: 29 RRGVVRCEVAVDPSSAS------ALEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREK 82
R GVVRC+ D +AS ALEQ K SA DRY KE+SSI VIGLSVHTAPVEMREK
Sbjct: 37 RSGVVRCDAGGDAQAASKAASITALEQFKISA-DRYMKEKSSIAVIGLSVHTAPVEMREK 95
Query: 83 LAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIP 142
LA+ E WPRAI EL +LNHIEEAAVLSTCNRMEIYVVALS +RG++EV +WMSK SGIP
Sbjct: 96 LAVAEELWPRAISELTSLNHIEEAAVLSTCNRMEIYVVALSWNRGIREVVDWMSKKSGIP 155
Query: 143 VAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISG 202
+EL EH F+L + DAT+HLFEVSAGLDSLVLGEGQILAQVKQVV+ GQ G G+NI
Sbjct: 156 ASELREHLFMLRDSDATRHLFEVSAGLDSLVLGEGQILAQVKQVVRNGQNSGGLGKNIDR 215
Query: 203 LFKHAISVGKRVRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVI 262
+FK AI+ GKRVR ETNI+AGAVSVSSAAVELA+MKLP+S +ARML+IGAGKMGKLV+
Sbjct: 216 MFKDAITAGKRVRCETNISAGAVSVSSAAVELAMMKLPKSECLSARMLLIGAGKMGKLVV 275
Query: 263 KHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322
KHL+AKGC K+VVVNRS ERV AI EE+ +EI+Y+PL+EM AADADVVFTSTASE+
Sbjct: 276 KHLIAKGCKKVVVVNRSVERVDAIREEMKDIEIVYRPLTEMYEAAADADVVFTSTASESL 335
Query: 323 LFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKED 382
LF K+H + LPP+ A+GG+RLF+DISVPRNVG+C+++VE ARVYNVDDLKEVV ANKED
Sbjct: 336 LFTKEHAEVLPPISLAMGGVRLFVDISVPRNVGACLSEVEHARVYNVDDLKEVVEANKED 395
Query: 383 RLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMG-DDIS 441
R+RKAMEAQ IIT+E K+F AWRDSLETVPTIKKLR+YA+RIR +EL+KCL K+G D+++
Sbjct: 396 RVRKAMEAQTIITQELKRFEAWRDSLETVPTIKKLRSYADRIRASELEKCLQKIGEDNLN 455
Query: 442 KKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFE 501
KK RR++++LS GI+NKLLHGP+QHLRCDGSDSRTLDETLENMHALNRMF L+T+ ++ E
Sbjct: 456 KKMRRSIEELSTGIVNKLLHGPLQHLRCDGSDSRTLDETLENMHALNRMFSLDTEKAVLE 515
Query: 502 QKVRAKIEQNQ 512
QK++AK+E+ Q
Sbjct: 516 QKIKAKVEKTQ 526
|
Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). Hordeum vulgare (taxid: 4513) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 7 EC: 0 |
| >sp|Q96563|HEM12_HORVU Glutamyl-tRNA reductase 2 (Fragment) OS=Hordeum vulgare GN=HEMA2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/465 (73%), Positives = 404/465 (86%), Gaps = 2/465 (0%)
Query: 49 QLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAV 108
Q K SA DRY KE+SSI VIGLSVHTAPV+MREKLA+ E WPRAI EL +LNHIEEAAV
Sbjct: 1 QFKISA-DRYIKEKSSIAVIGLSVHTAPVDMREKLAVAEELWPRAISELTSLNHIEEAAV 59
Query: 109 LSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAG 168
LSTCNRMEIYVVALS +RG++EV +WMSK SGIP +EL EH F+L + AT+HLFEVSAG
Sbjct: 60 LSTCNRMEIYVVALSWNRGIREVVDWMSKKSGIPASELREHLFMLRDSGATRHLFEVSAG 119
Query: 169 LDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVS 228
LDSLVLGEGQILAQVKQVV+ GQ G G+NI +FK AI+ GKR R ETNI+AGAVSVS
Sbjct: 120 LDSLVLGEGQILAQVKQVVRNGQNSGGLGKNIDRMFKDAITAGKRARCETNISAGAVSVS 179
Query: 229 SAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE 288
SAAVELA+MKLP+S +ARML+IGAGKMGKLV+KHL+AKGC K+VVVNRS ERV AI E
Sbjct: 180 SAAVELAMMKLPKSECLSARMLLIGAGKMGKLVVKHLIAKGCKKVVVVNRSVERVDAIRE 239
Query: 289 ELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348
E+ +EI+Y+PL+EM AADADVVFTSTASE+ LF K+H + LPP+ A+GG+RLF+DI
Sbjct: 240 EMKDIEIVYRPLTEMYEAAADADVVFTSTASESLLFTKEHAEALPPISLAMGGVRLFVDI 299
Query: 349 SVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSL 408
SVPRNVG+C++ VE ARVYNVDDLKEVV ANKEDR+RKAMEAQAIIT+E K+F AWRDSL
Sbjct: 300 SVPRNVGACLSQVEHARVYNVDDLKEVVEANKEDRVRKAMEAQAIITQELKRFEAWRDSL 359
Query: 409 ETVPTIKKLRAYAERIRVAELDKCLSKMG-DDISKKTRRAVDDLSRGIMNKLLHGPMQHL 467
ETVPTIKKLR+YA+RIR +ELDKCL K+G D+++KKTRR++++LS GI+NKLLHGP+QHL
Sbjct: 360 ETVPTIKKLRSYADRIRASELDKCLQKIGEDNLNKKTRRSIEELSTGIVNKLLHGPLQHL 419
Query: 468 RCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQ 512
RCDGSDSRTLDETL+NMHALNRMF L+T+ ++ EQK++AK+E+ Q
Sbjct: 420 RCDGSDSRTLDETLDNMHALNRMFNLDTEKAVLEQKIKAKVEKTQ 464
|
Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). Hordeum vulgare (taxid: 4513) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 7 EC: 0 |
| >sp|O65796|HEM13_HORVU Glutamyl-tRNA reductase 3, chloroplastic OS=Hordeum vulgare GN=HEMA3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/467 (70%), Positives = 399/467 (85%), Gaps = 2/467 (0%)
Query: 47 LEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEA 106
LEQ K SA DRY KE+SSI VIGLS+HTAPVEMREKLA+ E WPRA+ EL NLNHIE+A
Sbjct: 67 LEQFKISA-DRYMKEKSSIAVIGLSIHTAPVEMREKLAVAEELWPRAVAELTNLNHIEKA 125
Query: 107 AVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVS 166
AVLS CNRMEIYVVALS +RG++E+ +WMS SGIP EL EH F+ + DAT+HLFEVS
Sbjct: 126 AVLSPCNRMEIYVVALSWNRGIREIVDWMSMKSGIPAVELREHLFMFRDSDATRHLFEVS 185
Query: 167 AGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVS 226
+GLDSLVLGEGQILAQVKQVV+ GQ G G+NI +FK AI+ GKRVR+ETNI+ GAVS
Sbjct: 186 SGLDSLVLGEGQILAQVKQVVRSGQNSGGLGKNIDRMFKDAITAGKRVRSETNISCGAVS 245
Query: 227 VSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAI 286
VSSAAVELALMKLP+S +ARML+IGAGKMG+LV KHL AKGC K+V+VNRS ERV AI
Sbjct: 246 VSSAAVELALMKLPKSECLSARMLLIGAGKMGRLVAKHLAAKGCKKVVIVNRSVERVDAI 305
Query: 287 CEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFI 346
EE+ G+EI+Y+ L+EM AADADVVFTST+SE+PLF K+H + LPPV A+GG+RLF+
Sbjct: 306 REEMQGIEIVYRSLTEMYEAAADADVVFTSTSSESPLFTKEHAEALPPVSGALGGVRLFV 365
Query: 347 DISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRD 406
DISVPRNV +CV+DV ARVYNVDDLKEVV ANKEDRLRKAMEAQ II+EE K+F AWRD
Sbjct: 366 DISVPRNVSACVSDVGHARVYNVDDLKEVVEANKEDRLRKAMEAQTIISEELKRFEAWRD 425
Query: 407 SLETVPTIKKLRAYAERIRVAELDKCLSKMGDD-ISKKTRRAVDDLSRGIMNKLLHGPMQ 465
S+ETVPTIKKLR+YA+R+R +ELDKCL K+G+D ++KK RR+++ LS GI+N+LLHGP+Q
Sbjct: 426 SMETVPTIKKLRSYADRVRASELDKCLQKIGEDALTKKMRRSIEQLSTGIVNRLLHGPLQ 485
Query: 466 HLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQ 512
HLRCDG+D+RTLDETLENMHALNRMFGL+T+ ++ EQK++ K+E+ +
Sbjct: 486 HLRCDGTDNRTLDETLENMHALNRMFGLDTEKAVMEQKIKTKVEKQK 532
|
Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). Hordeum vulgare (taxid: 4513) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 7 EC: 0 |
| >sp|P0C587|HEM1_ORYSJ Glutamyl-tRNA reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os10g0502400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/467 (73%), Positives = 405/467 (86%), Gaps = 2/467 (0%)
Query: 47 LEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEA 106
LEQ K SA DRY KERSSI VIGLSVHTAPVEMREKLA+ E WPRAI EL +LNHIEEA
Sbjct: 71 LEQFKISA-DRYMKERSSIAVIGLSVHTAPVEMREKLAVAEELWPRAISELTSLNHIEEA 129
Query: 107 AVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVS 166
AVLSTCNRMEIYVVALS +RG++EV +WMSK SGIP +EL EH F+L + DAT+HLFEVS
Sbjct: 130 AVLSTCNRMEIYVVALSWNRGIREVVDWMSKKSGIPASELREHLFMLRDSDATRHLFEVS 189
Query: 167 AGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVS 226
AGLDSLVLGEGQILAQVKQVV+ GQ G G+NI +FK AI+ GKRVR ETNI++GAVS
Sbjct: 190 AGLDSLVLGEGQILAQVKQVVRSGQNSGGLGKNIDRMFKDAITAGKRVRCETNISSGAVS 249
Query: 227 VSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAI 286
VSSAAVELALMKLP+S +ARML+IGAGKMGKLV+KHL+AKGC K+VVVNRS ERV AI
Sbjct: 250 VSSAAVELALMKLPKSECLSARMLLIGAGKMGKLVVKHLIAKGCKKVVVVNRSVERVDAI 309
Query: 287 CEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFI 346
EE+ +EI+Y+PL+EM AA+ADVVFTSTASE PLF K+H + LP + A+GG+RLF+
Sbjct: 310 REEMKDIEIVYRPLTEMYEAAAEADVVFTSTASETPLFTKEHAEALPAISDAMGGVRLFV 369
Query: 347 DISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRD 406
DISVPRNV +CV++V ARVYNVDDLKEVV ANKEDRLRKAMEAQ IIT+E K+F AWRD
Sbjct: 370 DISVPRNVSACVSEVGHARVYNVDDLKEVVEANKEDRLRKAMEAQTIITQELKRFEAWRD 429
Query: 407 SLETVPTIKKLRAYAERIRVAELDKCLSKMGDD-ISKKTRRAVDDLSRGIMNKLLHGPMQ 465
SLETVPTIKKLR+YA+RIR +EL+KCL K+G+D ++KK RR++++LS GI+NKLLHGP+Q
Sbjct: 430 SLETVPTIKKLRSYADRIRASELEKCLQKIGEDALTKKMRRSIEELSTGIVNKLLHGPLQ 489
Query: 466 HLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQ 512
HLRCDGSDSRTLDETLENMHALNRMF L+T+ ++ EQK++AK+E++Q
Sbjct: 490 HLRCDGSDSRTLDETLENMHALNRMFSLDTEKAIIEQKIKAKVEKSQ 536
|
Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 7 EC: 0 |
| >sp|A2Z928|HEM1_ORYSI Glutamyl-tRNA reductase, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_033071 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/467 (73%), Positives = 405/467 (86%), Gaps = 2/467 (0%)
Query: 47 LEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEA 106
LEQ K SA DRY KERSSI VIGLSVHTAPVEMREKLA+ E WPRAI EL +LNHIEEA
Sbjct: 71 LEQFKISA-DRYMKERSSIAVIGLSVHTAPVEMREKLAVAEELWPRAISELTSLNHIEEA 129
Query: 107 AVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVS 166
AVLSTCNRMEIYVVALS +RG++EV +WMSK SGIP +EL EH F+L + DAT+HLFEVS
Sbjct: 130 AVLSTCNRMEIYVVALSWNRGIREVVDWMSKKSGIPASELREHLFMLRDSDATRHLFEVS 189
Query: 167 AGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVS 226
AGLDSLVLGEGQILAQVKQVV+ GQ G G+NI +FK AI+ GKRVR ETNI++GAVS
Sbjct: 190 AGLDSLVLGEGQILAQVKQVVRSGQNSGGLGKNIDRMFKDAITAGKRVRCETNISSGAVS 249
Query: 227 VSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAI 286
VSSAAVELALMKLP+S +ARML+IGAGKMGKLV+KHL+AKGC K+VVVNRS ERV AI
Sbjct: 250 VSSAAVELALMKLPKSECLSARMLLIGAGKMGKLVVKHLIAKGCKKVVVVNRSVERVDAI 309
Query: 287 CEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFI 346
EE+ +EI+Y+PL+EM AA+ADVVFTSTASE PLF K+H + LP + A+GG+RLF+
Sbjct: 310 REEMKDIEIVYRPLTEMYEAAAEADVVFTSTASETPLFTKEHAEALPAISDAMGGVRLFV 369
Query: 347 DISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRD 406
DISVPRNV +CV++V ARVYNVDDLKEVV ANKEDRLRKAMEAQ IIT+E K+F AWRD
Sbjct: 370 DISVPRNVSACVSEVGHARVYNVDDLKEVVEANKEDRLRKAMEAQTIITQELKRFEAWRD 429
Query: 407 SLETVPTIKKLRAYAERIRVAELDKCLSKMGDD-ISKKTRRAVDDLSRGIMNKLLHGPMQ 465
SLETVPTIKKLR+YA+RIR +EL+KCL K+G+D ++KK RR++++LS GI+NKLLHGP+Q
Sbjct: 430 SLETVPTIKKLRSYADRIRASELEKCLQKIGEDSLTKKMRRSIEELSTGIVNKLLHGPLQ 489
Query: 466 HLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQ 512
HLRCDGSDSRTLDETLENMHALNRMF L+T+ ++ EQK++AK+E++Q
Sbjct: 490 HLRCDGSDSRTLDETLENMHALNRMFSLDTEKAIIEQKIKAKVEKSQ 536
|
Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 7 EC: 0 |
| >sp|Q117I4|HEM1_TRIEI Glutamyl-tRNA reductase OS=Trichodesmium erythraeum (strain IMS101) GN=hemA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/436 (46%), Positives = 290/436 (66%), Gaps = 12/436 (2%)
Query: 64 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALS 123
+I VIGLS TAPVE+REKL++PE E AI ELC+ + +E +LSTCNR+EIYVV
Sbjct: 2 NIAVIGLSHKTAPVEVREKLSLPETEIQNAISELCSGTYTQEVGILSTCNRLEIYVVTNE 61
Query: 124 QHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQV 183
G++EVT+++S++S IP+ +L H F+L ++D+ HL V++GLDSLVLGEGQILAQV
Sbjct: 62 MQPGIREVTQFLSESSKIPLNQLRPHLFMLLHEDSIMHLMRVASGLDSLVLGEGQILAQV 121
Query: 184 KQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALMKLPESS 243
KQ K+GQ G GR ++ LFK A++ GKRVRTET+I GAVSVSSAAVELA MKL + S
Sbjct: 122 KQTHKLGQKYKGIGRILNRLFKQAVTAGKRVRTETSIGTGAVSVSSAAVELAQMKLEDLS 181
Query: 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEM 303
+ ++ ++GAGKM KL+++HL+AKG K+ ++NRS R + I + EM
Sbjct: 182 N--YQVAIVGAGKMSKLLVQHLLAKGANKISIINRSVGRAQDLANSFKDANIKVYSMLEM 239
Query: 304 LSCAADADVVFTSTASEAPLFLKDHVQD-LPPVEAAVGGLRLFIDISVPRNVGSCVADVE 362
+ ++D+VFTSTA+ + K ++ L P++ + +DISVPRN+G+ V+++
Sbjct: 240 VQVIGESDLVFTSTAATELILDKAKLETILDPLKPL-----MLVDISVPRNIGNDVSELP 294
Query: 363 TARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAE 422
R +NVDDLK VVA N+E R + AMEA+ ++ EE + F W SLETVPTI LR E
Sbjct: 295 NVRCFNVDDLKAVVAQNRESRRQMAMEAEVLLEEEVEAFDVWWKSLETVPTINSLRQKIE 354
Query: 423 RIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTLDETLE 482
IR EL+K LS++G + ++K + ++ L+RGI+NK+LH PM LR + ++
Sbjct: 355 TIREQELEKALSRLGSEFAEKHQEVIEALTRGIVNKILHDPMVQLRAQ----QDIEARRH 410
Query: 483 NMHALNRMFGLETDTS 498
M L +F LE++ S
Sbjct: 411 AMETLQLLFNLESEMS 426
|
Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). Trichodesmium erythraeum (strain IMS101) (taxid: 203124) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 7 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 513 | ||||||
| 225458990 | 545 | PREDICTED: glutamyl-tRNA reductase 1, ch | 0.976 | 0.919 | 0.869 | 0.0 | |
| 150171033 | 542 | glutamyl tRNA Reductase [Nicotiana tabac | 0.920 | 0.870 | 0.889 | 0.0 | |
| 449461347 | 552 | PREDICTED: glutamyl-tRNA reductase 1, ch | 0.968 | 0.900 | 0.835 | 0.0 | |
| 356552995 | 538 | PREDICTED: glutamyl-tRNA reductase 1, ch | 0.957 | 0.912 | 0.844 | 0.0 | |
| 449521415 | 552 | PREDICTED: LOW QUALITY PROTEIN: glutamyl | 0.968 | 0.900 | 0.833 | 0.0 | |
| 356500793 | 542 | PREDICTED: glutamyl-tRNA reductase 1, ch | 0.957 | 0.905 | 0.842 | 0.0 | |
| 4324495 | 542 | glutamyl-tRNA reductase precursor [Glyci | 0.957 | 0.905 | 0.842 | 0.0 | |
| 356515671 | 536 | PREDICTED: glutamyl-tRNA reductase 1, ch | 0.962 | 0.921 | 0.832 | 0.0 | |
| 255537860 | 565 | Glutamyl-tRNA reductase 1, chloroplast p | 0.974 | 0.884 | 0.850 | 0.0 | |
| 356507973 | 539 | PREDICTED: glutamyl-tRNA reductase 1, ch | 0.962 | 0.916 | 0.829 | 0.0 |
| >gi|225458990|ref|XP_002285583.1| PREDICTED: glutamyl-tRNA reductase 1, chloroplastic [Vitis vinifera] gi|147816412|emb|CAN77439.1| hypothetical protein VITISV_007402 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/515 (86%), Positives = 471/515 (91%), Gaps = 14/515 (2%)
Query: 11 QIRVACKPNRNERNLQQSRRGVV---RCEVAVD---------PSSASALEQLKASAPDRY 58
Q R+ CKP R R+L Q RG RCEVA D SS SALEQLK SA DRY
Sbjct: 33 QYRIFCKPARTRRSLIQ--RGASLNSRCEVASDALVDTDSTRSSSVSALEQLKTSAADRY 90
Query: 59 TKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIY 118
TKERSSIVVIGLS+HT PVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIY
Sbjct: 91 TKERSSIVVIGLSIHTTPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIY 150
Query: 119 VVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQ 178
VVALSQHRGVKEVTEWMSKTSG+PV+ELC HRFLLYNKDATQHLFEVSAGLDSLVLGEGQ
Sbjct: 151 VVALSQHRGVKEVTEWMSKTSGVPVSELCHHRFLLYNKDATQHLFEVSAGLDSLVLGEGQ 210
Query: 179 ILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALMK 238
ILAQVKQVVKVGQGVVGFGRNISGLFKHAI+VGKRVRTETNIAAGAVSVSSAAVELALMK
Sbjct: 211 ILAQVKQVVKVGQGVVGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMK 270
Query: 239 LPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK 298
LPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMV+VNR EERVAAI EE+ VEIIY+
Sbjct: 271 LPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVIVNRGEERVAAIREEMKDVEIIYR 330
Query: 299 PLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCV 358
PL+EML+CAA+ADVVFTSTASE PLFLK+HV+DLP V VGGLRLF+DISVPRNVG+CV
Sbjct: 331 PLTEMLACAAEADVVFTSTASETPLFLKEHVKDLPAVGQDVGGLRLFVDISVPRNVGACV 390
Query: 359 ADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLR 418
+D+ETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQF AWRDSLETVPTIKKLR
Sbjct: 391 SDLETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFEAWRDSLETVPTIKKLR 450
Query: 419 AYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTLD 478
AYAERIRVAEL+KCLSKMGDDISKKTRRAVDDLSRGI+NKLLHGPMQHLRCDGSDSRTL
Sbjct: 451 AYAERIRVAELEKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLS 510
Query: 479 ETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQK 513
ETLENMHALNRMF LET+ SL EQK+RAK+EQ QK
Sbjct: 511 ETLENMHALNRMFSLETEISLLEQKIRAKVEQTQK 545
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|150171033|emb|CAN88916.1| glutamyl tRNA Reductase [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 876 bits (2264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/472 (88%), Positives = 449/472 (95%)
Query: 42 SSASALEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLN 101
SS SALEQLK SA DRYTKERSSIVVIGLS+HT PVE+REKLAIPEAEWPRAIGELCNLN
Sbjct: 71 SSLSALEQLKTSAADRYTKERSSIVVIGLSIHTTPVEIREKLAIPEAEWPRAIGELCNLN 130
Query: 102 HIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQH 161
HIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSG+PV E+C+HRFLLYN DATQH
Sbjct: 131 HIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGVPVTEICKHRFLLYNNDATQH 190
Query: 162 LFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIA 221
LFEVSAGLDSLVLGEGQILAQVKQVVKVGQGV GFGRNISGLFKHAI+VGKRVRTETNIA
Sbjct: 191 LFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVTGFGRNISGLFKHAITVGKRVRTETNIA 250
Query: 222 AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEE 281
AGAVSVSSAAVELALMKLPESSHA+ARMLVIGAGKMGKLVIKHLVAKGCT+MVVVNR+EE
Sbjct: 251 AGAVSVSSAAVELALMKLPESSHASARMLVIGAGKMGKLVIKHLVAKGCTRMVVVNRTEE 310
Query: 282 RVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGG 341
RV+AI EE+ VEIIYKPLSEML+ AA+ADV+FTSTASE PLFLK+HV DLP V A+VGG
Sbjct: 311 RVSAIREEIKDVEIIYKPLSEMLNSAAEADVIFTSTASETPLFLKEHVLDLPAVAASVGG 370
Query: 342 LRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQF 401
LRLF+DISVPRNVG+CV ++E ARVYNVDDLKEVVAANKEDRLRKAMEAQAII+EESKQF
Sbjct: 371 LRLFVDISVPRNVGACVNELENARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQF 430
Query: 402 AAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLH 461
AWRDSLETVPTIKKLRAYAER+RVAEL+KC+SKMGDDISKKTR+AVDDLSRGI+NKLLH
Sbjct: 431 EAWRDSLETVPTIKKLRAYAERLRVAELEKCMSKMGDDISKKTRKAVDDLSRGIVNKLLH 490
Query: 462 GPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQK 513
GPMQHLRCDGSDSRTL ETLENMHALNRMF LETD S+ EQK+RAK+EQ QK
Sbjct: 491 GPMQHLRCDGSDSRTLSETLENMHALNRMFNLETDISVLEQKIRAKVEQTQK 542
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461347|ref|XP_004148403.1| PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Cucumis sativus] gi|2495155|sp|P93111.1|HEM11_CUCSA RecName: Full=Glutamyl-tRNA reductase 1, chloroplastic; Short=GluTR; Flags: Precursor gi|1694926|dbj|BAA08910.1| glutamyl-tRNA reductase [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/516 (83%), Positives = 460/516 (89%), Gaps = 19/516 (3%)
Query: 16 CKPNRNERNLQQSRRGV-----VRCEVA----------VDP---SSASALEQLKASAPDR 57
CK R R L Q R GV +CE+A +DP S+ SALEQLK SA DR
Sbjct: 38 CKSIRTRRILFQ-RTGVSSFTPFKCELASSDVLVQNDEIDPPKSSNLSALEQLKTSAVDR 96
Query: 58 YTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEI 117
YTKERSSIVVIGLS+HT PVEMREKLAIPEAEWPRAIGELC LNHIEEAAVLSTCNRMEI
Sbjct: 97 YTKERSSIVVIGLSIHTTPVEMREKLAIPEAEWPRAIGELCGLNHIEEAAVLSTCNRMEI 156
Query: 118 YVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEG 177
YVVALSQHRGVKEVTEWMSKTSGIPV+E+C+HRFLLYN DATQH+FEVSAGLDSLVLGEG
Sbjct: 157 YVVALSQHRGVKEVTEWMSKTSGIPVSEICQHRFLLYNNDATQHIFEVSAGLDSLVLGEG 216
Query: 178 QILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALM 237
QILAQVKQVVKVGQGV GFGRNISGLFKHAI+VGKRVRTETNIAAGAVSVSSAAVELALM
Sbjct: 217 QILAQVKQVVKVGQGVAGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALM 276
Query: 238 KLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIY 297
KLPE SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERV AI EE+ VEIIY
Sbjct: 277 KLPEPSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVTAIREEMKDVEIIY 336
Query: 298 KPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSC 357
KPL+EMLSC A+ADV+FTSTASE+ LF K+ V+DLPPV VGGLRLFIDISVPRNVG+C
Sbjct: 337 KPLTEMLSCTAEADVIFTSTASESLLFTKEQVKDLPPVGHDVGGLRLFIDISVPRNVGAC 396
Query: 358 VADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKL 417
+ ++E RVYNVDDLKEVVAANKEDRLRKAMEAQ+IITEESKQF AWRDSLETVPTIKKL
Sbjct: 397 INNLEDVRVYNVDDLKEVVAANKEDRLRKAMEAQSIITEESKQFEAWRDSLETVPTIKKL 456
Query: 418 RAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTL 477
RAYAERIR AEL+KCLSKMGDDI KKTRRAVDDLSRGI+NKLLHGPMQHLRCDGSDSRTL
Sbjct: 457 RAYAERIRTAELEKCLSKMGDDIPKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTL 516
Query: 478 DETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQK 513
ETLENMHALNRMF LET+ ++ EQK+RAK+EQNQK
Sbjct: 517 SETLENMHALNRMFSLETEIAVLEQKIRAKVEQNQK 552
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552995|ref|XP_003544844.1| PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 869 bits (2246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/501 (84%), Positives = 456/501 (91%), Gaps = 10/501 (1%)
Query: 20 RNERNLQQSRRGVVRCE------VAVDPS----SASALEQLKASAPDRYTKERSSIVVIG 69
+N + L QS+RG +RCE V D + S SALEQLK SA DRYTKERSSI+VIG
Sbjct: 36 KNRKTLVQSQRGAIRCEASSASDVVADATKKAASVSALEQLKTSAADRYTKERSSIMVIG 95
Query: 70 LSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVK 129
LSVH+ PVEMREKLAIPEAEWPRAI ELC+LNHIEEAAVLSTCNRMEIYVVALS+HRGVK
Sbjct: 96 LSVHSTPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVVALSKHRGVK 155
Query: 130 EVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKV 189
EVTEWMSKTSGIPVA+LC+H+FLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKV
Sbjct: 156 EVTEWMSKTSGIPVADLCQHQFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKV 215
Query: 190 GQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALMKLPESSHATARM 249
GQGV GFGRNISGLFKHAI+VGKRVRTETNIAAGAVSVSSAAVELALMKLPE+SHA ARM
Sbjct: 216 GQGVNGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPEASHANARM 275
Query: 250 LVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAAD 309
LVIGAGKMGKLVIKHLVAKGCTKMVVVNRS+ERV AI EE+ VEIIYKPLSEML+C +
Sbjct: 276 LVIGAGKMGKLVIKHLVAKGCTKMVVVNRSQERVTAIHEEIKDVEIIYKPLSEMLTCIGE 335
Query: 310 ADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNV 369
ADVVFTSTASE PLFLKD V+DLPP VGG RLF+DISVPRNVGSC++D+E+ RVYNV
Sbjct: 336 ADVVFTSTASENPLFLKDDVKDLPPATNEVGGRRLFVDISVPRNVGSCLSDLESVRVYNV 395
Query: 370 DDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERIRVAEL 429
DDLKEVVAANKEDRLRKAMEAQAII EESKQF AWRDSLETVPTIKKLRAYAERIR+AEL
Sbjct: 396 DDLKEVVAANKEDRLRKAMEAQAIIGEESKQFEAWRDSLETVPTIKKLRAYAERIRLAEL 455
Query: 430 DKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTLDETLENMHALNR 489
+KCL KMGDDI+KKT+RAVDDLSRGI+NKLLHGPMQHLRCDGSDSRTL ETLENMHALNR
Sbjct: 456 EKCLGKMGDDINKKTQRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLSETLENMHALNR 515
Query: 490 MFGLETDTSLFEQKVRAKIEQ 510
MF LET+ S+ EQK+RAK+EQ
Sbjct: 516 MFNLETEISVLEQKIRAKVEQ 536
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449521415|ref|XP_004167725.1| PREDICTED: LOW QUALITY PROTEIN: glutamyl-tRNA reductase 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 868 bits (2243), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/516 (83%), Positives = 459/516 (88%), Gaps = 19/516 (3%)
Query: 16 CKPNRNERNLQQSRRGV-----VRCEVA----------VDP---SSASALEQLKASAPDR 57
CK R R L Q R GV +CE+A +DP S+ SALEQLK SA DR
Sbjct: 38 CKSIRTRRILFQ-RTGVSSFTPFKCELASSDVLVQNDEIDPPKSSNLSALEQLKTSAVDR 96
Query: 58 YTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEI 117
YTKERSSIVVIGLS+HT PVEMREKLAIPEAEWPRAIGELC LNHIEEAAVLSTCNRMEI
Sbjct: 97 YTKERSSIVVIGLSIHTTPVEMREKLAIPEAEWPRAIGELCGLNHIEEAAVLSTCNRMEI 156
Query: 118 YVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEG 177
YVVALSQHRGVKEVTEWMSKTSGIPV+E+C+HRFLLYN DATQH+FEVSAGLDSLVLGEG
Sbjct: 157 YVVALSQHRGVKEVTEWMSKTSGIPVSEICQHRFLLYNNDATQHIFEVSAGLDSLVLGEG 216
Query: 178 QILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALM 237
QILAQVKQVVKVGQGV GFGRNISGLFKHAI+VGKRVRTETNIAAGAVSVSSAAVELALM
Sbjct: 217 QILAQVKQVVKVGQGVAGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALM 276
Query: 238 KLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIY 297
KLPE SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERV AI EE+ VEIIY
Sbjct: 277 KLPEPSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVTAIREEMKDVEIIY 336
Query: 298 KPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSC 357
KPL+EMLSC A+ADV+FTSTASE+ LF K+ V+DLPPV VGGLRLFIDISVPRNVG+C
Sbjct: 337 KPLTEMLSCTAEADVIFTSTASESLLFTKEQVKDLPPVGHDVGGLRLFIDISVPRNVGAC 396
Query: 358 VADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKL 417
+ ++E RVYNVDDLKEVVAANKEDRLRKAMEAQ+IITEESKQF AWRDSLETVPTI KL
Sbjct: 397 INNLEDVRVYNVDDLKEVVAANKEDRLRKAMEAQSIITEESKQFEAWRDSLETVPTIXKL 456
Query: 418 RAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTL 477
RAYAERIR AEL+KCLSKMGDDI KKTRRAVDDLSRGI+NKLLHGPMQHLRCDGSDSRTL
Sbjct: 457 RAYAERIRTAELEKCLSKMGDDIPKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTL 516
Query: 478 DETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQK 513
ETLENMHALNRMF LET+ ++ EQK+RAK+EQNQK
Sbjct: 517 SETLENMHALNRMFSLETEIAVLEQKIRAKVEQNQK 552
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500793|ref|XP_003519215.1| PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/501 (84%), Positives = 456/501 (91%), Gaps = 10/501 (1%)
Query: 20 RNERNLQQSRRGVVRCE------VAVDPS----SASALEQLKASAPDRYTKERSSIVVIG 69
+ + L QS+RG +RCE V D + S SALEQLK SA DRYTKERSS++VIG
Sbjct: 40 KTRKTLVQSQRGPIRCEASSASDVVADATKKAASVSALEQLKTSAADRYTKERSSVMVIG 99
Query: 70 LSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVK 129
LSVH+ PVEMREKLAIPEAEWPRAI ELC+LNHIEEAAVLSTCNRMEIYVVALS+HRGVK
Sbjct: 100 LSVHSTPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVVALSKHRGVK 159
Query: 130 EVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKV 189
EVTEWMSKTSGIPVA+LC+H+FLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKV
Sbjct: 160 EVTEWMSKTSGIPVADLCQHQFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKV 219
Query: 190 GQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALMKLPESSHATARM 249
GQGV GFGRNISGLFKHAI+VGKRVRTETNIAAGAVSVSSAAVELALMKLPE+SHA ARM
Sbjct: 220 GQGVNGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPEASHANARM 279
Query: 250 LVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAAD 309
LVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAI EE+ VEIIYKPLSEML+C +
Sbjct: 280 LVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIHEEIKDVEIIYKPLSEMLTCIGE 339
Query: 310 ADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNV 369
ADVVFTSTASE PLFLKD V++LPP VGG RLF+DISVPRNVGSC++D+E+ RVYNV
Sbjct: 340 ADVVFTSTASENPLFLKDDVKELPPATDEVGGRRLFVDISVPRNVGSCLSDLESVRVYNV 399
Query: 370 DDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERIRVAEL 429
DDLKEVVAANKEDRLRKAMEAQAII EESKQF AWRDSLETVPTIKKLRAYAERIR+AEL
Sbjct: 400 DDLKEVVAANKEDRLRKAMEAQAIIGEESKQFEAWRDSLETVPTIKKLRAYAERIRLAEL 459
Query: 430 DKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTLDETLENMHALNR 489
+KCL KMGDDI+KKT+RAVDDLSRGI+NKLLHGPMQHLRCDGSDSRTL ETLENMHALNR
Sbjct: 460 EKCLGKMGDDINKKTQRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLSETLENMHALNR 519
Query: 490 MFGLETDTSLFEQKVRAKIEQ 510
MF LET+ S+ EQK+RAK+EQ
Sbjct: 520 MFNLETEISVLEQKIRAKVEQ 540
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4324495|gb|AAD16897.1| glutamyl-tRNA reductase precursor [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 863 bits (2231), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/501 (84%), Positives = 456/501 (91%), Gaps = 10/501 (1%)
Query: 20 RNERNLQQSRRGVVRCE------VAVDPS----SASALEQLKASAPDRYTKERSSIVVIG 69
+ + L QS+RG +RCE V D + S SALEQLK SA DRYTKERSS++VIG
Sbjct: 40 KTRKTLVQSQRGPIRCEASSASDVVADATKKAASVSALEQLKTSAADRYTKERSSVMVIG 99
Query: 70 LSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVK 129
LSVH+ PVEMREKLAIPEAEWPRAI ELC+LNHIEEAAVLSTCNRMEIYVVALS+HRGVK
Sbjct: 100 LSVHSTPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVVALSKHRGVK 159
Query: 130 EVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKV 189
EVTEWMSKTSGIPVA+LC+H+FLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKV
Sbjct: 160 EVTEWMSKTSGIPVADLCQHQFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKV 219
Query: 190 GQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALMKLPESSHATARM 249
GQGV GFGRNISGLFKHAI+VGKRVRTETNIAAGAVSVSSAAVELALMKLPE+SHA ARM
Sbjct: 220 GQGVNGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPEASHANARM 279
Query: 250 LVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAAD 309
LVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAI EE+ VEIIYKPLSEML+C +
Sbjct: 280 LVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREEIKDVEIIYKPLSEMLTCIGE 339
Query: 310 ADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNV 369
ADVVFTSTASE PLFLKD V++LPP VGG RLF+DISVPRNVGSC++D+E+ RVYNV
Sbjct: 340 ADVVFTSTASENPLFLKDDVKELPPATDEVGGRRLFVDISVPRNVGSCLSDLESVRVYNV 399
Query: 370 DDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERIRVAEL 429
DDLKEVVAANKEDRLRKAMEAQAII EESKQF AWRDSLETVPTIKKLRAYAERIR+AEL
Sbjct: 400 DDLKEVVAANKEDRLRKAMEAQAIIGEESKQFEAWRDSLETVPTIKKLRAYAERIRLAEL 459
Query: 430 DKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTLDETLENMHALNR 489
+KCL KMGDDI+KKT+RAVDDLSRGI+NKLLHGPMQHLRCDGSDSRTL ETLENMHALNR
Sbjct: 460 EKCLGKMGDDINKKTQRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLSETLENMHALNR 519
Query: 490 MFGLETDTSLFEQKVRAKIEQ 510
MF LET+ S+ EQK+RAK+EQ
Sbjct: 520 MFNLETEISVLEQKIRAKVEQ 540
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515671|ref|XP_003526522.1| PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/502 (83%), Positives = 452/502 (90%), Gaps = 8/502 (1%)
Query: 18 PNRNERNLQQSRRGVVRCEV------AVDPSSASALEQLKASAPDRYTKERSSIVVIGLS 71
P +N R L Q RG +RC+ +V P++A+ALEQLK SA DRYTKERSSI+VIGLS
Sbjct: 37 PRQNRRTLIQ--RGFIRCDALASDASSVAPNNATALEQLKISAADRYTKERSSIIVIGLS 94
Query: 72 VHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEV 131
VHTAPVEMREKLAIPEAEWPRAI ELC+LNHIEEAA+LSTCNRMEIYVVALSQHRGVKEV
Sbjct: 95 VHTAPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAILSTCNRMEIYVVALSQHRGVKEV 154
Query: 132 TEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQ 191
EWMSKTS I V+EL +HRFLLYN DATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQ
Sbjct: 155 MEWMSKTSSIHVSELSQHRFLLYNNDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQ 214
Query: 192 GVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLV 251
GV GFGRNISGLFKHAI+VGKRVRTETNIA+GAVSVSSAAVELA MKL E+SH ARMLV
Sbjct: 215 GVSGFGRNISGLFKHAITVGKRVRTETNIASGAVSVSSAAVELAYMKLLEASHDNARMLV 274
Query: 252 IGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADAD 311
+GAGKMGKLVIKHLVAK C KMVVVNR+EERVAAI EEL +EIIYKPLSEML+CA +AD
Sbjct: 275 VGAGKMGKLVIKHLVAKSCKKMVVVNRTEERVAAIREELKDIEIIYKPLSEMLTCAGEAD 334
Query: 312 VVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDD 371
VVFTSTASE+PLFLK HV+DLPP VGG R FIDISVPRNVGSCV+D+E+ RVYNVDD
Sbjct: 335 VVFTSTASESPLFLKHHVKDLPPANQDVGGRRFFIDISVPRNVGSCVSDLESVRVYNVDD 394
Query: 372 LKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDK 431
LKEVVAANKEDRLRKAMEAQAII EESKQF AWRDSLETVPTIKKLRAYAERIR+AEL+K
Sbjct: 395 LKEVVAANKEDRLRKAMEAQAIIAEESKQFEAWRDSLETVPTIKKLRAYAERIRLAELEK 454
Query: 432 CLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMF 491
CL KMGDDI KKTRRAVDDLSRGI+NKLLHGPMQHLRCDG+DSRTL ETLENMHALNRMF
Sbjct: 455 CLGKMGDDIPKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGNDSRTLSETLENMHALNRMF 514
Query: 492 GLETDTSLFEQKVRAKIEQNQK 513
LET+ S+ E+K+RAK+EQNQK
Sbjct: 515 NLETEISVLEEKIRAKVEQNQK 536
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537860|ref|XP_002509995.1| Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis] gi|223550696|gb|EEF52182.1| Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/521 (85%), Positives = 467/521 (89%), Gaps = 21/521 (4%)
Query: 11 QIRVACKPNRNERNLQQSRRGV------VRCEVA------------VDP---SSASALEQ 49
+IRV CKP+RN N R V VRCEV +DP SS SALEQ
Sbjct: 44 KIRVFCKPSRNNTNDNGKYRRVLAQRAGVRCEVVASTDSAVETDSNIDPAKVSSLSALEQ 103
Query: 50 LKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVL 109
LK SA DRYTKER+SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELC+LNHI+EAAVL
Sbjct: 104 LKTSAADRYTKERASIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCSLNHIDEAAVL 163
Query: 110 STCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 169
STCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPV+E+CEH+FLLYN DATQHLFEVSAGL
Sbjct: 164 STCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVSEICEHQFLLYNNDATQHLFEVSAGL 223
Query: 170 DSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSS 229
DSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSS
Sbjct: 224 DSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSS 283
Query: 230 AAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEE 289
AAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAI EE
Sbjct: 284 AAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREE 343
Query: 290 LNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349
+ VEIIYKPL EML+CAA+ADVVFTSTASE PLFLK++V+DLP V + VG LRLF+DIS
Sbjct: 344 IKDVEIIYKPLDEMLTCAAEADVVFTSTASETPLFLKENVKDLPSVSSEVGSLRLFVDIS 403
Query: 350 VPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLE 409
VPRNVGSCV DVE ARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQF AWRDSLE
Sbjct: 404 VPRNVGSCVNDVEKARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFEAWRDSLE 463
Query: 410 TVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLRC 469
TVPTIKKLRAYAERIRVAELDKCLSKMG++I KKTRRAVDDLSRGI+NKLLHGPMQHLRC
Sbjct: 464 TVPTIKKLRAYAERIRVAELDKCLSKMGEEIPKKTRRAVDDLSRGIVNKLLHGPMQHLRC 523
Query: 470 DGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQ 510
DGSDSRTL ETLENMHALNRMF LET+ ++ EQK+RAK Q
Sbjct: 524 DGSDSRTLSETLENMHALNRMFSLETEVAVLEQKLRAKTSQ 564
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507973|ref|XP_003522737.1| PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/505 (82%), Positives = 455/505 (90%), Gaps = 11/505 (2%)
Query: 18 PNRNERNLQQSRRGVVRCEV------AVDPSSA---SALEQLKASAPDRYTKERSSIVVI 68
P +N R L Q RGV+RC+ +V P++A SALEQLK SA DRYTKERSSI+ I
Sbjct: 37 PGQNRRTLIQ--RGVIRCDAQPSDASSVAPNNATALSALEQLKTSAADRYTKERSSIIAI 94
Query: 69 GLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGV 128
GLSVHTAPVEMREKLAIPEAEWPRAI ELC+LNHIEEAAVLSTCNRMEIYV+ALSQHRGV
Sbjct: 95 GLSVHTAPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVLALSQHRGV 154
Query: 129 KEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVK 188
KEV EWMSKTS +PV+EL +HRFLLYN DATQHLFEVSAGLDSLVLGEGQIL+QVKQVVK
Sbjct: 155 KEVMEWMSKTSSVPVSELSQHRFLLYNNDATQHLFEVSAGLDSLVLGEGQILSQVKQVVK 214
Query: 189 VGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALMKLPESSHATAR 248
VGQGV GFGRNISGLFKHAI+VGKRVRTETNIA+GAVSVSSAAVELA MKLPE+SH AR
Sbjct: 215 VGQGVNGFGRNISGLFKHAITVGKRVRTETNIASGAVSVSSAAVELAYMKLPEASHDNAR 274
Query: 249 MLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA 308
MLVIGAGKMGKLVIKHLVAKGC KMVVVNR+EERVAAI EEL +EIIYKPLSEML+CA
Sbjct: 275 MLVIGAGKMGKLVIKHLVAKGCKKMVVVNRTEERVAAIREELKDIEIIYKPLSEMLTCAG 334
Query: 309 DADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYN 368
+AD+VFTSTASE PLFLK+HV+DLPP VGG R FIDISVPRNVGSCV+D+E+ RVYN
Sbjct: 335 EADLVFTSTASENPLFLKEHVKDLPPASQEVGGRRFFIDISVPRNVGSCVSDLESVRVYN 394
Query: 369 VDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERIRVAE 428
VDDLKEVVAANKEDRLRKAMEAQAII EESKQF AWRDSLETVPTIKKLRAYAERIR+AE
Sbjct: 395 VDDLKEVVAANKEDRLRKAMEAQAIIAEESKQFEAWRDSLETVPTIKKLRAYAERIRLAE 454
Query: 429 LDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTLDETLENMHALN 488
L+KCL KMGDDI KKTRRAVDDLSRGI+NKLLHGPMQHLRCDG+DSRTL ETLENM+ALN
Sbjct: 455 LEKCLGKMGDDIPKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGNDSRTLSETLENMNALN 514
Query: 489 RMFGLETDTSLFEQKVRAKIEQNQK 513
RMF LET+ S+ E+K+RAK+EQNQK
Sbjct: 515 RMFNLETEISVLEEKIRAKVEQNQK 539
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 513 | ||||||
| TAIR|locus:2016605 | 543 | HEMA1 [Arabidopsis thaliana (t | 0.988 | 0.933 | 0.765 | 5e-202 | |
| TAIR|locus:2024392 | 530 | HEMA2 [Arabidopsis thaliana (t | 0.953 | 0.922 | 0.747 | 6.7e-191 | |
| TAIR|locus:2042516 | 524 | HEMA3 [Arabidopsis thaliana (t | 0.923 | 0.904 | 0.633 | 3.7e-151 | |
| TIGR_CMR|GSU_3284 | 434 | GSU_3284 "glutamyl-tRNA reduct | 0.820 | 0.970 | 0.348 | 5.1e-58 | |
| TIGR_CMR|CHY_1207 | 449 | CHY_1207 "glutamyl-tRNA reduct | 0.764 | 0.873 | 0.353 | 2.2e-57 | |
| UNIPROTKB|Q9KQ24 | 419 | hemA "Glutamyl-tRNA reductase" | 0.764 | 0.935 | 0.353 | 4.3e-54 | |
| TIGR_CMR|VC_2180 | 419 | VC_2180 "glutamyl-tRNA reducta | 0.764 | 0.935 | 0.353 | 4.3e-54 | |
| TIGR_CMR|SO_3834 | 416 | SO_3834 "glutamyl-tRNA reducta | 0.762 | 0.939 | 0.329 | 9.2e-52 | |
| TIGR_CMR|BA_4698 | 444 | BA_4698 "glutamyl-tRNA reducta | 0.760 | 0.878 | 0.328 | 1.1e-50 | |
| UNIPROTKB|P0A6X1 | 418 | hemA "HemA" [Escherichia coli | 0.812 | 0.997 | 0.299 | 7.7e-48 |
| TAIR|locus:2016605 HEMA1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1955 (693.3 bits), Expect = 5.0e-202, P = 5.0e-202
Identities = 392/512 (76%), Positives = 433/512 (84%)
Query: 5 QSQLGQQ-IRVACKPNRNERNLQQSRRGVVRC--EVAVDPSSASALEQLKASAPDRYTKE 61
Q+ LG +RV K NR R L Q R + + A + +S SALEQLK SA DRYTKE
Sbjct: 34 QTPLGLNGVRVLPKNNRTRRGLIQKARCELSASSDSASNAASISALEQLKNSAADRYTKE 93
Query: 62 RSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVA 121
RSSIVVIGLS+HTAPVEMREKLAIPEAEWPRAI ELC LNHIEEAAVLSTCNRMEIYV+A
Sbjct: 94 RSSIVVIGLSIHTAPVEMREKLAIPEAEWPRAIAELCGLNHIEEAAVLSTCNRMEIYVLA 153
Query: 122 LSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILA 181
LSQHRGVKEVTEWMSKTSGIPV+E+C+HRFLLYNKDATQH+FEVSAGLDSLVLGEGQILA
Sbjct: 154 LSQHRGVKEVTEWMSKTSGIPVSEICQHRFLLYNKDATQHIFEVSAGLDSLVLGEGQILA 213
Query: 182 XXXXXXXXXXXXXXFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPE 241
FGRNISGLFKHAI+VGKRVRTETNI ELALMKLP+
Sbjct: 214 QVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRTETNIASGAVSVSSAAVELALMKLPQ 273
Query: 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS 301
SS+ +ARM VIGAGKMGKLVIKHL+AKGCTK+VVVNRSEERV+AI EE+ G+EIIY+PL
Sbjct: 274 SSNVSARMCVIGAGKMGKLVIKHLMAKGCTKVVVVNRSEERVSAIREEMPGIEIIYRPLD 333
Query: 302 EMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADV 361
EML+CA++ADVVFTSTASE PLFLK+HV++LP VGGLR F+DISVPRNVGSCV +V
Sbjct: 334 EMLACASEADVVFTSTASETPLFLKEHVENLPQASPEVGGLRHFVDISVPRNVGSCVGEV 393
Query: 362 ETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYA 421
ETARVYNVDDLKEVVAANKEDR+RKAMEAQ IITEES QF AWRDSLETVPTIKKLRAYA
Sbjct: 394 ETARVYNVDDLKEVVAANKEDRMRKAMEAQTIITEESTQFEAWRDSLETVPTIKKLRAYA 453
Query: 422 ERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTLDETL 481
ERIRVAEL+KC+SKMGDDI+KKT RAVDDLSRGI+N+ LHGPMQHLRCDGSDSRTL ETL
Sbjct: 454 ERIRVAELEKCMSKMGDDINKKTTRAVDDLSRGIVNRFLHGPMQHLRCDGSDSRTLSETL 513
Query: 482 ENMHALNRMFGLETDTSLFEQKVRAKIEQNQK 513
ENMHALNRM+GLE D + E+K++A EQ QK
Sbjct: 514 ENMHALNRMYGLEKD--ILEEKLKAMAEQQQK 543
|
|
| TAIR|locus:2024392 HEMA2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1850 (656.3 bits), Expect = 6.7e-191, P = 6.7e-191
Identities = 376/503 (74%), Positives = 417/503 (82%)
Query: 12 IRVACKPNRNERNLQQSRRGVVRCEVAVDPSSAS--ALEQLKASAPDRYTKERSSIVVIG 69
IR NRN+R L Q RCE++ +AS ALEQLK SA DRYTKERSSIVVIG
Sbjct: 37 IRALPMNNRNKRGLIQR----ARCEISPSNKAASISALEQLKTSAIDRYTKERSSIVVIG 92
Query: 70 LSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVK 129
LS+HTAPVEMREKLAIPEAEWPRAI ELC LNHIEEAAVLSTCNRMEIYV+ALSQHRGVK
Sbjct: 93 LSIHTAPVEMREKLAIPEAEWPRAIAELCGLNHIEEAAVLSTCNRMEIYVLALSQHRGVK 152
Query: 130 EVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAXXXXXXXX 189
EVTEWMSKTSGIPV+E+C+HRFLLYNKD TQH+FEVSAGLDSLVLGEGQILA
Sbjct: 153 EVTEWMSKTSGIPVSEICQHRFLLYNKDVTQHIFEVSAGLDSLVLGEGQILAQVKQVVKV 212
Query: 190 XXXXXXFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHAT-AR 248
FGRNISGLFKHAI+VGKRVRTETNI ELALMKLPESSHA+ AR
Sbjct: 213 GQGVNGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPESSHASSAR 272
Query: 249 MLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN-GVEIIYKPLSEMLSCA 307
MLV+GAGKMGKLVIKHLVAKGCTKMVVVNRSEE+VAA+ E+ GVEIIYKPL EMLSCA
Sbjct: 273 MLVVGAGKMGKLVIKHLVAKGCTKMVVVNRSEEKVAAVRNEMPPGVEIIYKPLDEMLSCA 332
Query: 308 ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVY 367
A+ADVVFTSTASE PLFLK+ V+ LPPV A RLF+DISVPRNVGSCVA+++ RV+
Sbjct: 333 AEADVVFTSTASETPLFLKEQVETLPPVRDA----RLFVDISVPRNVGSCVAEIDGTRVF 388
Query: 368 NVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERIRVA 427
NVDDLKEVVAANKEDR+RKAM+AQAIIT+ESK F AWRDSLETVPTIKKLR Y ERI A
Sbjct: 389 NVDDLKEVVAANKEDRVRKAMDAQAIITDESKHFEAWRDSLETVPTIKKLRGYTERIIAA 448
Query: 428 ELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTLDETLENMHAL 487
E++K L KMG D++KK R+ VDDL RGI+NKLLHGPMQHLRCDG+DSRTL ETL+NM AL
Sbjct: 449 EIEKSLPKMGIDMNKKMRKTVDDLIRGIVNKLLHGPMQHLRCDGNDSRTLSETLDNMQAL 508
Query: 488 NRMFGLETDTSLFEQKVRAKIEQ 510
NRM+GL D + E+K+RAK+E+
Sbjct: 509 NRMYGL--DAEILEEKIRAKVEK 529
|
|
| TAIR|locus:2042516 HEMA3 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1475 (524.3 bits), Expect = 3.7e-151, P = 3.7e-151
Identities = 309/488 (63%), Positives = 380/488 (77%)
Query: 26 QQSRRGV---VRCEVAVDPSS-ASALEQLKAS-APDRYTKERSSIVVIGLSVHTAPVEMR 80
+ +RRG+ VRCE + PSS +S L++LK S A DRYT+ERSSIVVIGLS HT+P+EMR
Sbjct: 41 KMTRRGLIQRVRCETS--PSSDSSPLDKLKNSPAIDRYTRERSSIVVIGLSFHTSPLEMR 98
Query: 81 EKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSG 140
E+LAIPEAEWP AI +LC LNHIEEAAVLSTCNR+EIYV ALS++RGVKEVTEWMSK SG
Sbjct: 99 ERLAIPEAEWPLAITQLCALNHIEEAAVLSTCNRIEIYVSALSRYRGVKEVTEWMSKRSG 158
Query: 141 IPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAXXXXXXXXXXXXXXFGRNI 200
IPV+++C+HRFLLYNKDATQHLF+VSAGL+SLV+GE QI + FGR I
Sbjct: 159 IPVSDICQHRFLLYNKDATQHLFQVSAGLESLVIGENQIQSQVRKAEQVVKQEG-FGRII 217
Query: 201 SGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKL 260
S LF+ A GKRVR +TNI ELAL KLP S ++A MLVIGAG+MGK
Sbjct: 218 STLFEKANKAGKRVRAQTNIASGAVSVSSAAVELALTKLP-GSVSSAMMLVIGAGEMGKR 276
Query: 261 VIKHLVAKGCTKMVVVNRSEERVAAICEEL-NGVEIIYKPLSEMLSCAADADVVFTSTAS 319
+I+HLVAKGCTKMVV+NRSE++VAAI +E+ +GVEIIYKPL E+L+CAA+A+V+FTST+S
Sbjct: 277 IIEHLVAKGCTKMVVMNRSEDKVAAIRKEMQSGVEIIYKPLDEILACAAEANVIFTSTSS 336
Query: 320 EAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAAN 379
E PLFLK+HV+ LPP A RLF+DISVPRNVGSCVA++++ARVYNVDDLKEVVAAN
Sbjct: 337 ETPLFLKEHVEILPPCPADYA--RLFVDISVPRNVGSCVAELDSARVYNVDDLKEVVAAN 394
Query: 380 KEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDD 439
KEDR RK+MEA II EE+ +F WRDSL+T PTI+KLR+ ERIR ++K +SK G+
Sbjct: 395 KEDRARKSMEALPIIREETIEFEGWRDSLQTFPTIRKLRSKTERIRAECVEKLISKHGNG 454
Query: 440 ISKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSL 499
+ KKTR AV+ +R I+N +L PM+HLR DG+ S L ETLENM A+NR++ E D L
Sbjct: 455 MDKKTREAVEKQTRIIVNNILDYPMKHLRYDGTGSSKLRETLENMQAVNRIY--ELDGEL 512
Query: 500 FEQKVRAK 507
E+K+R K
Sbjct: 513 LEEKIREK 520
|
|
| TIGR_CMR|GSU_3284 GSU_3284 "glutamyl-tRNA reductase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 151/433 (34%), Positives = 228/433 (52%)
Query: 64 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALS 123
+IVV+GLS TA VE+REK+A + + + L ++ I EA ++STCNR+E+Y
Sbjct: 2 NIVVVGLSHKTASVEIREKIAFAPTQMEKPLRMLIAIDDIAEAVIVSTCNRVELYASTRD 61
Query: 124 QHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAXX 183
G+ + ++ G+PV L H + + + A +H+F V+A LDS+V+GE QIL
Sbjct: 62 VAGGMARLKRFLGDYHGVPVEVLEPHLYSHHGEAAIRHVFRVAASLDSMVVGEPQILGQI 121
Query: 184 XXXXXXXXXXXXFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESS 243
G ++ A SV KRVRTET I ELA + S
Sbjct: 122 KTAYGYAAEFRTSGIILNRFLHKAFSVAKRVRTETKIASSAVSVSFAAVELARKIFGDLS 181
Query: 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEM 303
T +++IGAG+M +L KH + G ++V NR+ ER + EE G I ++ L +
Sbjct: 182 DKT--VMLIGAGEMCELAAKHFLNNGARGVMVTNRTYERAERLAEEFEGKAIHFEDLFDQ 239
Query: 304 LSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVET 363
L AD+V +ST + + + ++ + FIDI+VPR++ V DVE
Sbjct: 240 LH---KADIVLSSTGATHYIIRPKDIDEV--IRRRKMKPMFFIDIAVPRDIDPKVNDVEN 294
Query: 364 ARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAER 423
+Y++DDL+ VVA+N + R +A +A+ II EE QF W SLE PTI LR+ E
Sbjct: 295 VYLYDMDDLQNVVASNLQQRAEEAKKAEGIIEEEIGQFYKWISSLEVTPTIVALRSKFED 354
Query: 424 IRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTLDETLEN 483
+R AEL+K LS D+ + ++ L+ I+NKLLH P L+ G RT D ++
Sbjct: 355 VRRAELEKTLSAW-KDLPPDGAKRLEALTAAIVNKLLHPPTATLKRTGQGGRT-DLYVD- 411
Query: 484 MHALNRMFGLETD 496
AL +F L+T+
Sbjct: 412 --ALRTLFDLQTE 422
|
|
| TIGR_CMR|CHY_1207 CHY_1207 "glutamyl-tRNA reductase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 144/407 (35%), Positives = 225/407 (55%)
Query: 65 IVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQ 124
+VV+G++ TAPVE+REKL+ + + A L + I+ + +LSTCNR E+YV +L
Sbjct: 3 LVVVGVNHRTAPVEVREKLSFSDHQLKDAFSALLSYPSIDGSVILSTCNRTEVYVASLDV 62
Query: 125 HRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAXXX 184
G+K V E+++ +G+ ++++ + + DA HLF V++GLDS++LGE QIL
Sbjct: 63 DTGLKVVREFLANWAGLSLSDIKNYTYNYTLYDAVHHLFRVASGLDSMILGETQILGQVR 122
Query: 185 XXXXXXXXXXXFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSH 244
+ ++ LF+HAI+VGK+VRTET I +LA S
Sbjct: 123 DAFLKASSLKASNKILNTLFQHAITVGKKVRTETGIDKNPVSISYAAVQLACSFF--GSL 180
Query: 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEML 304
+ L+IGAGKM L KHL G +++V NRS E+ E NG+ + P +++
Sbjct: 181 KDKKALLIGAGKMSSLTAKHLSYYGIKEIIVANRSFEKAEQFAREFNGIAV---PFAKIY 237
Query: 305 SCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR--LF-IDISVPRNVGSCVADV 361
A+ D+V + T AP L H + L E +G + L+ IDI+VPR++ +A +
Sbjct: 238 DILAEVDLVISCTG--AP-HLIIHKEQL---ELVIGNRQHPLYLIDIAVPRDIDPEIAKL 291
Query: 362 ETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYA 421
+Y++D L+ VV N E+R + A A+ II E K F W + VPTI L+ A
Sbjct: 292 PNVFLYDIDKLQNVVTKNLEERKKLAEMAENIIETELKAFIEWHSTQFVVPTIVALKKKA 351
Query: 422 ERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLR 468
E I+ EL K L+K+G+ IS++ + V L+ I+N+LLH P+ L+
Sbjct: 352 EEIKQKELTKALNKLGN-ISEREKNIVCALAHTILNQLLHTPIVKLK 397
|
|
| UNIPROTKB|Q9KQ24 hemA "Glutamyl-tRNA reductase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 144/407 (35%), Positives = 220/407 (54%)
Query: 64 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALS 123
S++ IG++ +TA VE+REK+A + A+ +L +H++ +LSTCNR EIY S
Sbjct: 2 SLLAIGINHNTASVELREKVAFGPEKLSLALNQLSTSSHVKGGVILSTCNRTEIYCDVRS 61
Query: 124 QHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAXX 183
+ +V EW+S+ + + EL ++ + A +HL V+ GLDSLVLGE QIL
Sbjct: 62 ASKN--KVIEWLSQFHQVSLDELKPSLYVHEEQAAIRHLMRVACGLDSLVLGEPQILGQV 119
Query: 184 XXXXXXXXXXXXFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESS 243
LF+ A SV KRVRTET I LA K S
Sbjct: 120 KQAYAEARENHAVNPATEKLFQKAFSVAKRVRTETEIGGSAVSVAYAACTLA--KHIFES 177
Query: 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEM 303
A A +L++GAG+ +LV KHL C +M+V NR+ ER ++ ++ G ++I L+E+
Sbjct: 178 LADATVLLVGAGETIELVAKHLAGHHCKRMIVANRTRERALSLAQQF-GADVI--ALNEI 234
Query: 304 LSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVET 363
A AD+V +STAS P+ K V+ ++A L +DI+VPR++ V +
Sbjct: 235 PDYLAQADIVISSTASPLPIIGKGMVESA--LKARRHQPMLLVDIAVPRDIEPQVGKLND 292
Query: 364 ARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAER 423
A +Y+VDDL+ +V +N E R +A++A+AI++EES F +W SL+ V +I+ R A
Sbjct: 293 AYLYSVDDLQSIVDSNIEQRKVEAIQAEAIVSEESATFMSWMRSLQAVDSIRDYRKQANE 352
Query: 424 IRVAELDKCLSKM--GDDISKKTRRAVDDLSRGIMNKLLHGPMQHLR 468
R L+K L + G D K + +LS + NKL+H P + L+
Sbjct: 353 AREELLNKSLQALAAGGDPEK----LLIELSNKLTNKLIHTPTRALQ 395
|
|
| TIGR_CMR|VC_2180 VC_2180 "glutamyl-tRNA reductase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 144/407 (35%), Positives = 220/407 (54%)
Query: 64 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALS 123
S++ IG++ +TA VE+REK+A + A+ +L +H++ +LSTCNR EIY S
Sbjct: 2 SLLAIGINHNTASVELREKVAFGPEKLSLALNQLSTSSHVKGGVILSTCNRTEIYCDVRS 61
Query: 124 QHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAXX 183
+ +V EW+S+ + + EL ++ + A +HL V+ GLDSLVLGE QIL
Sbjct: 62 ASKN--KVIEWLSQFHQVSLDELKPSLYVHEEQAAIRHLMRVACGLDSLVLGEPQILGQV 119
Query: 184 XXXXXXXXXXXXFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESS 243
LF+ A SV KRVRTET I LA K S
Sbjct: 120 KQAYAEARENHAVNPATEKLFQKAFSVAKRVRTETEIGGSAVSVAYAACTLA--KHIFES 177
Query: 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEM 303
A A +L++GAG+ +LV KHL C +M+V NR+ ER ++ ++ G ++I L+E+
Sbjct: 178 LADATVLLVGAGETIELVAKHLAGHHCKRMIVANRTRERALSLAQQF-GADVI--ALNEI 234
Query: 304 LSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVET 363
A AD+V +STAS P+ K V+ ++A L +DI+VPR++ V +
Sbjct: 235 PDYLAQADIVISSTASPLPIIGKGMVESA--LKARRHQPMLLVDIAVPRDIEPQVGKLND 292
Query: 364 ARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAER 423
A +Y+VDDL+ +V +N E R +A++A+AI++EES F +W SL+ V +I+ R A
Sbjct: 293 AYLYSVDDLQSIVDSNIEQRKVEAIQAEAIVSEESATFMSWMRSLQAVDSIRDYRKQANE 352
Query: 424 IRVAELDKCLSKM--GDDISKKTRRAVDDLSRGIMNKLLHGPMQHLR 468
R L+K L + G D K + +LS + NKL+H P + L+
Sbjct: 353 AREELLNKSLQALAAGGDPEK----LLIELSNKLTNKLIHTPTRALQ 395
|
|
| TIGR_CMR|SO_3834 SO_3834 "glutamyl-tRNA reductase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 133/404 (32%), Positives = 213/404 (52%)
Query: 64 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALS 123
S+V IG++ TA V++REK+A + A+ L + EA ++STCNR E+Y
Sbjct: 2 SLVAIGINHKTATVDLREKVAFSPDKIHDAMKSLASRTRSGEAVIVSTCNRTELYC---- 57
Query: 124 QHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAXX 183
+ ++ EW+ + G+ ++ + + ++A +HL V++GLDSL+LGE QIL
Sbjct: 58 NNGDETDIIEWLEEYHGLEHQDVAPCLYNYHGQEAVRHLMRVASGLDSLILGEPQILGQV 117
Query: 184 XXXXXXXXXXXXFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESS 243
I LF++ SV K+VRTET I +A K SS
Sbjct: 118 KQAFVKAKEAGTVALTIDRLFQNTFSVAKKVRTETEIGAAAVSVAFAAVSMA--KHIFSS 175
Query: 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEM 303
+T ++L+IGAG+ +LV KHL G MVV NR+ ER ++CEE N I + +
Sbjct: 176 LSTTKVLLIGAGETIELVAKHLKDNGVASMVVANRTLERAQSMCEEFNATAITLAQIPDF 235
Query: 304 LSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVET 363
L AD+V +STAS P+ K V+ ++ L +DI+VPR++ VAD++
Sbjct: 236 LP---KADIVISSTASPLPILGKGMVEKA--LKQRRHQPMLLVDIAVPRDIEPEVADLDD 290
Query: 364 ARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAER 423
A +Y VDDL ++ NK R A +A+ I E+S F W SLE+V +I++ R+ +
Sbjct: 291 AFLYTVDDLHSIIEQNKASRKEAAEQAELITEEQSHLFMEWVRSLESVDSIREYRSQSMA 350
Query: 424 IRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHL 467
I+ +++ L+K+ T + + +L+ + N+L+H P Q L
Sbjct: 351 IKDELVERALNKLAQ--GGDTEQVLVELANRLTNRLIHAPTQAL 392
|
|
| TIGR_CMR|BA_4698 BA_4698 "glutamyl-tRNA reductase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 132/402 (32%), Positives = 212/402 (52%)
Query: 65 IVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQ 124
I+V+ ++ TAPVE REKL AE RA+ L N + E ++STCNR EIY V
Sbjct: 3 ILVVSVNYRTAPVEFREKLTFQAAELERAMTTLQNQKSVLENVIVSTCNRTEIYAVVDQL 62
Query: 125 HRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAXXX 184
H G + ++++ + + E+ + + A HLF V+ GLDS+V+GE QIL
Sbjct: 63 HTGRYYIKKFLADWFQLEIEEVAPYLTIFEQDGAIDHLFRVTCGLDSMVVGETQILGQIK 122
Query: 185 XXXXXXXXXXXFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSH 244
G + LFK I++ KR +ET I EL E +
Sbjct: 123 DSFLEAQQVKATGTIFNELFKQVITLAKRAHSETTIGESAMSVSYAAVELGKKIFGELTD 182
Query: 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEML 304
+L++GAGKMG+L +++L G K+ V+NR+ + + E+ G KPLSE L
Sbjct: 183 C--HVLILGAGKMGELALQNLYGSGARKVTVMNRTLSKAEIMAEKYMGHA---KPLSE-L 236
Query: 305 SCAA-DADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLF-IDISVPRNVGSCVADVE 362
CA +AD++ +ST + + K+ + VE G LF +DI+VPR++ + ++E
Sbjct: 237 QCALLEADILISSTGASDYVITKEM---MTKVEKMRSGRPLFMVDIAVPRDIDPAIDELE 293
Query: 363 TARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAE 422
+ +Y++DDL+ VV AN+ +RL++A + Q +I EE F W +L VP I LR A
Sbjct: 294 GSFLYDIDDLQGVVEANRAERLKEAEKIQFMIEEEIVLFKTWLSTLGVVPLISALRDKAL 353
Query: 423 RIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPM 464
I+ +E + L + ++S + R+ + ++ I+N+LL P+
Sbjct: 354 AIQ-SETMESLERKIPNLSDRERKVISKHTKSIINQLLKDPI 394
|
|
| UNIPROTKB|P0A6X1 hemA "HemA" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 129/431 (29%), Positives = 223/431 (51%)
Query: 64 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALS 123
+++ +G++ TAPV +RE+++ + +A+ L ++ VLSTCNR E+Y+
Sbjct: 2 TLLALGINHKTAPVSLRERVSFSPDKLDQALDSLLAQPMVQGGVVLSTCNRTELYLSVEE 61
Query: 124 QHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAXX 183
Q + + W+ + +L + + + DA HL V++GLDSLVLGE QIL
Sbjct: 62 QDNLQEALIRWLCDYHNLNEEDLRKSLYWHQDNDAVSHLMRVASGLDSLVLGEPQILGQV 121
Query: 184 XXXXXXXXXXXXFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESS 243
+ +F+ + SV KRVRTET+I LA ++ ES
Sbjct: 122 KKAFADSQKGHMKASELERMFQKSFSVAKRVRTETDIGASAVSVAFAACTLA-RQIFESL 180
Query: 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEM 303
+T +L++GAG+ +LV +HL KM++ NR+ ER + +E+ G E+I LS++
Sbjct: 181 -STVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQILADEV-GAEVI--ALSDI 236
Query: 304 LSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVET 363
+AD++ +STAS P+ K V+ +++ L +DI+VPR+V V +
Sbjct: 237 DERLREADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLAN 294
Query: 364 ARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAER 423
A +Y+VDDL+ +++ N R A+EA+ I+ +E+ +F AW + TI++ R+ AE+
Sbjct: 295 AYLYSVDDLQSIISHNLAQRKAAAVEAETIVAQETSEFMAWLRAQSASETIREYRSQAEQ 354
Query: 424 IRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTLDETLEN 483
+R K L+ + + + + DL+ + N+L+H P + L+ D D E
Sbjct: 355 VRDELTAKALAAL--EQGGDAQAIMQDLAWKLTNRLIHAPTKSLQQAARDG---DN--ER 407
Query: 484 MHALNRMFGLE 494
++ L GLE
Sbjct: 408 LNILRDSLGLE 418
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q3M6T2 | HEM1_ANAVT | 1, ., 2, ., 1, ., 7, 0 | 0.4683 | 0.8167 | 0.9789 | yes | no |
| A2Z928 | HEM1_ORYSI | 1, ., 2, ., 1, ., 7, 0 | 0.7344 | 0.9064 | 0.8659 | N/A | no |
| B0BZF9 | HEM1_ACAM1 | 1, ., 2, ., 1, ., 7, 0 | 0.4625 | 0.8362 | 0.9907 | yes | no |
| O65796 | HEM13_HORVU | 1, ., 2, ., 1, ., 7, 0 | 0.7087 | 0.9064 | 0.8691 | N/A | no |
| P49295 | HEM12_CUCSA | 1, ., 2, ., 1, ., 7, 0 | 0.7654 | 0.9103 | 0.8616 | N/A | no |
| Q46LG2 | HEM1_PROMT | 1, ., 2, ., 1, ., 7, 0 | 0.4107 | 0.8343 | 0.9705 | yes | no |
| B2J5E4 | HEM1_NOSP7 | 1, ., 2, ., 1, ., 7, 0 | 0.4683 | 0.8167 | 0.9789 | yes | no |
| Q5N3B4 | HEM1_SYNP6 | 1, ., 2, ., 1, ., 7, 0 | 0.4411 | 0.8323 | 0.9748 | yes | no |
| C6DYY7 | HEM1_GEOSM | 1, ., 2, ., 1, ., 7, 0 | 0.3849 | 0.8011 | 0.9470 | yes | no |
| Q2JJG8 | HEM1_SYNJB | 1, ., 2, ., 1, ., 7, 0 | 0.4465 | 0.8167 | 0.9721 | yes | no |
| Q2JWU6 | HEM1_SYNJA | 1, ., 2, ., 1, ., 7, 0 | 0.4431 | 0.8148 | 0.9698 | yes | no |
| A2C1K4 | HEM1_PROM1 | 1, ., 2, ., 1, ., 7, 0 | 0.4129 | 0.8343 | 0.9705 | yes | no |
| A5GTE8 | HEM1_SYNR3 | 1, ., 2, ., 1, ., 7, 0 | 0.3981 | 0.8167 | 0.9479 | yes | no |
| Q3AK73 | HEM1_SYNSC | 1, ., 2, ., 1, ., 7, 0 | 0.4233 | 0.8206 | 0.9745 | yes | no |
| A2BW63 | HEM1_PROM5 | 1, ., 2, ., 1, ., 7, 0 | 0.4077 | 0.8245 | 0.9724 | yes | no |
| O08393 | HEM1_NOSS1 | 1, ., 2, ., 1, ., 7, 0 | 0.4683 | 0.8167 | 0.9789 | yes | no |
| Q7V1T7 | HEM1_PROMP | 1, ., 2, ., 1, ., 7, 0 | 0.4159 | 0.8226 | 0.9745 | yes | no |
| B5EBG7 | HEM1_GEOBB | 1, ., 2, ., 1, ., 7, 0 | 0.3826 | 0.8011 | 0.9470 | yes | no |
| B8HR03 | HEM1_CYAP4 | 1, ., 2, ., 1, ., 7, 0 | 0.4610 | 0.8304 | 0.9861 | yes | no |
| Q96563 | HEM12_HORVU | 1, ., 2, ., 1, ., 7, 0 | 0.7311 | 0.9025 | 0.9956 | N/A | no |
| P49294 | HEM12_ARATH | 1, ., 2, ., 1, ., 7, 0 | 0.7980 | 0.9493 | 0.9188 | no | no |
| P93111 | HEM11_CUCSA | 1, ., 2, ., 1, ., 7, 0 | 0.8352 | 0.9688 | 0.9003 | N/A | no |
| A5GLB0 | HEM1_SYNPW | 1, ., 2, ., 1, ., 7, 0 | 0.4236 | 0.8245 | 0.9657 | yes | no |
| Q42843 | HEM11_HORVU | 1, ., 2, ., 1, ., 7, 0 | 0.7189 | 0.9415 | 0.9165 | N/A | no |
| A9BAR3 | HEM1_PROM4 | 1, ., 2, ., 1, ., 7, 0 | 0.4231 | 0.8109 | 0.9563 | yes | no |
| Q117I4 | HEM1_TRIEI | 1, ., 2, ., 1, ., 7, 0 | 0.4655 | 0.8265 | 0.9837 | yes | no |
| P42804 | HEM11_ARATH | 1, ., 2, ., 1, ., 7, 0 | 0.8081 | 0.9805 | 0.9263 | yes | no |
| Q0I9I2 | HEM1_SYNS3 | 1, ., 2, ., 1, ., 7, 0 | 0.4292 | 0.8226 | 0.9656 | yes | no |
| P0C587 | HEM1_ORYSJ | 1, ., 2, ., 1, ., 7, 0 | 0.7344 | 0.9064 | 0.8659 | yes | no |
| B7K1R5 | HEM1_CYAP8 | 1, ., 2, ., 1, ., 7, 0 | 0.4688 | 0.8245 | 0.9883 | yes | no |
| B1XLK6 | HEM1_SYNP2 | 1, ., 2, ., 1, ., 7, 0 | 0.4472 | 0.8265 | 0.9976 | yes | no |
| A5D3L4 | HEM1_PELTS | 1, ., 2, ., 1, ., 7, 0 | 0.3615 | 0.8109 | 0.9369 | yes | no |
| Q8DI53 | HEM1_THEEB | 1, ., 2, ., 1, ., 7, 0 | 0.4421 | 0.8187 | 0.9859 | yes | no |
| B1WQ09 | HEM1_CYAA5 | 1, ., 2, ., 1, ., 7, 0 | 0.4688 | 0.8245 | 0.9837 | yes | no |
| Q7NLA8 | HEM1_GLOVI | 1, ., 2, ., 1, ., 7, 0 | 0.4078 | 0.8226 | 0.9813 | yes | no |
| Q31QY3 | HEM1_SYNE7 | 1, ., 2, ., 1, ., 7, 0 | 0.4411 | 0.8323 | 0.9748 | yes | no |
| Q7U769 | HEM1_SYNPX | 1, ., 2, ., 1, ., 7, 0 | 0.4282 | 0.8245 | 0.9791 | yes | no |
| Q3AXK4 | HEM1_SYNS9 | 1, ., 2, ., 1, ., 7, 0 | 0.4324 | 0.8206 | 0.9745 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00015045001 | RecName- Full=Glutamyl-tRNA reductase; EC=1.2.1.70; (545 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00017986001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (411 aa) | • | • | • | • | • | 0.997 | ||||
| GSVIVG00015405001 | RecName- Full=Delta-aminolevulinic acid dehydratase; EC=4.2.1.24; (430 aa) | • | • | • | • | 0.977 | |||||
| GSVIVG00036298001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (566 aa) | • | • | 0.975 | |||||||
| GSVIVG00022488001 | SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (427 aa) | • | • | 0.933 | |||||||
| GSVIVG00008868001 | SubName- Full=Chromosome chr13 scaffold_210, whole genome shotgun sequence; (278 aa) | • | • | • | 0.926 | ||||||
| GSVIVG00027816001 | SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (338 aa) | • | • | • | 0.838 | ||||||
| GSVIVG00029410001 | SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (380 aa) | • | • | • | 0.836 | ||||||
| GSVIVG00037523001 | SubName- Full=Chromosome undetermined scaffold_89, whole genome shotgun sequence; (352 aa) | • | • | 0.730 | |||||||
| GSVIVG00032163001 | RecName- Full=Ferrochelatase; EC=4.99.1.1;; Catalyzes the ferrous insertion into protoporphyrin [...] (422 aa) | • | • | 0.707 | |||||||
| GSVIVG00010463001 | SubName- Full=Chromosome chr17 scaffold_263, whole genome shotgun sequence; (473 aa) | • | • | 0.671 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 513 | |||
| PLN00203 | 519 | PLN00203, PLN00203, glutamyl-tRNA reductase | 0.0 | |
| PRK00045 | 423 | PRK00045, hemA, glutamyl-tRNA reductase; Reviewed | 1e-151 | |
| COG0373 | 414 | COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme m | 1e-119 | |
| TIGR01035 | 417 | TIGR01035, hemA, glutamyl-tRNA reductase | 1e-109 | |
| cd05213 | 311 | cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-bindi | 1e-103 | |
| pfam05201 | 150 | pfam05201, GlutR_N, Glutamyl-tRNAGlu reductase, N- | 8e-54 | |
| pfam01488 | 133 | pfam01488, Shikimate_DH, Shikimate / quinate 5-deh | 8e-43 | |
| PRK13940 | 414 | PRK13940, PRK13940, glutamyl-tRNA reductase; Provi | 1e-42 | |
| pfam00745 | 101 | pfam00745, GlutR_dimer, Glutamyl-tRNAGlu reductase | 8e-27 | |
| PRK00676 | 338 | PRK00676, hemA, glutamyl-tRNA reductase; Validated | 6e-13 | |
| cd01065 | 155 | cd01065, NAD_bind_Shikimate_DH, NAD(P) binding dom | 9e-09 | |
| COG0169 | 283 | COG0169, AroE, Shikimate 5-dehydrogenase [Amino ac | 2e-07 | |
| pfam03807 | 93 | pfam03807, F420_oxidored, NADP oxidoreductase coen | 9e-07 | |
| cd01078 | 194 | cd01078, NAD_bind_H4MPT_DH, NADP binding domain of | 3e-05 | |
| COG2423 | 330 | COG2423, COG2423, Predicted ornithine cyclodeamina | 4e-05 | |
| pfam03435 | 380 | pfam03435, Saccharop_dh, Saccharopine dehydrogenas | 2e-04 | |
| COG0345 | 266 | COG0345, ProC, Pyrroline-5-carboxylate reductase [ | 0.001 | |
| cd08242 | 319 | cd08242, MDR_like, Medium chain dehydrogenases/red | 0.002 | |
| PRK00258 | 278 | PRK00258, aroE, shikimate 5-dehydrogenase; Reviewe | 0.002 | |
| pfam03446 | 163 | pfam03446, NAD_binding_2, NAD binding domain of 6- | 0.002 | |
| PRK11880 | 267 | PRK11880, PRK11880, pyrroline-5-carboxylate reduct | 0.003 |
| >gnl|CDD|215101 PLN00203, PLN00203, glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Score = 904 bits (2339), Expect = 0.0
Identities = 392/482 (81%), Positives = 432/482 (89%), Gaps = 3/482 (0%)
Query: 18 PNRNERNLQQSRRGVVRCEVAVDPSSASALEQLKASAPDRYTKERSSIVVIGLSVHTAPV 77
P+ + V + +SASALEQLK SA DRYTKE+SSIVVIGLS+HTAPV
Sbjct: 41 PSVVGSAAGLATA--VDSASS-KAASASALEQLKNSAADRYTKEKSSIVVIGLSIHTAPV 97
Query: 78 EMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSK 137
EMREKLAIPEAEWPRAI ELC+LNHIEEAAVLSTCNRMEIYVVALS HRGVKEVTEWMSK
Sbjct: 98 EMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVVALSWHRGVKEVTEWMSK 157
Query: 138 TSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFG 197
TSGIPV+EL +H FLLY+KDATQHLFEVS GLDSLVLGEGQILAQVKQVVKVGQGV GFG
Sbjct: 158 TSGIPVSELRQHLFLLYDKDATQHLFEVSGGLDSLVLGEGQILAQVKQVVKVGQGVDGFG 217
Query: 198 RNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKM 257
RN+SGLFKHAI+ GKRVRTETNIA+GAVSVSSAAVELALMKLPESSHA+AR+LVIGAGKM
Sbjct: 218 RNLSGLFKHAITAGKRVRTETNIASGAVSVSSAAVELALMKLPESSHASARVLVIGAGKM 277
Query: 258 GKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTST 317
GKL++KHLV+KGCTKMVVVNRSEERVAA+ EE VEIIYKPL EML+CAA+ADVVFTST
Sbjct: 278 GKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTST 337
Query: 318 ASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVA 377
+SE PLFLK+HV+ LPP VGG RLF+DISVPRNVG+CV+++E+ARVYNVDDLKEVVA
Sbjct: 338 SSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACVSELESARVYNVDDLKEVVA 397
Query: 378 ANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMG 437
ANKEDRLRKAMEAQ II EESK F AWRDSLETVPTIKKLR+YAERIR AEL+KCLSKMG
Sbjct: 398 ANKEDRLRKAMEAQTIIREESKNFEAWRDSLETVPTIKKLRSYAERIRAAELEKCLSKMG 457
Query: 438 DDISKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDT 497
DD++KK R+AV+DLSRGI+NKLLHGPMQHLRCDGSDSRT+ ETLENMHALNRMF LET+
Sbjct: 458 DDLTKKQRKAVEDLSRGIVNKLLHGPMQHLRCDGSDSRTVSETLENMHALNRMFDLETEI 517
Query: 498 SL 499
+
Sbjct: 518 AG 519
|
Length = 519 |
| >gnl|CDD|234592 PRK00045, hemA, glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Score = 439 bits (1131), Expect = e-151
Identities = 180/435 (41%), Positives = 257/435 (59%), Gaps = 14/435 (3%)
Query: 64 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALS 123
S++ +GL+ TAPVE+REKLA E E A+ L + EA +LSTCNR EIY V
Sbjct: 2 SLLAVGLNHKTAPVELREKLAFSEDELEEALESLLASPSVLEAVILSTCNRTEIYAVVDQ 61
Query: 124 QHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQV 183
H G + + W+++ G+ + EL + ++ ++A +HLF V++GLDS+VLGE QIL QV
Sbjct: 62 FHAGREAIIRWLAEYHGLDLEELRPYLYVHEGEEAVRHLFRVASGLDSMVLGEPQILGQV 121
Query: 184 KQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALMKLPESS 243
K + Q G ++ LF+ A SV KRVRTET I AGAVSV+SAAVELA
Sbjct: 122 KDAYALAQEAGTVGTILNRLFQKAFSVAKRVRTETGIGAGAVSVASAAVELAKQIF--GD 179
Query: 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEM 303
+ ++LVIGAG+MG+LV KHL KG K+ V NR+ ER + EE G E I PL E+
Sbjct: 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF-GGEAI--PLDEL 236
Query: 304 LSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVET 363
A+AD+V +ST + P+ K V+ ++A L +D++VPR++ V ++
Sbjct: 237 PEALAEADIVISSTGAPHPIIGKGMVERA--LKARRHRPLLLVDLAVPRDIEPEVGELPG 294
Query: 364 ARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAER 423
+Y+VDDL+E+V N R A +A+AI+ EE +F W SLE VPTI+ LR AE
Sbjct: 295 VYLYDVDDLQEIVEENLAQRQEAAEKAEAIVEEEVAEFMEWLRSLEVVPTIRALREQAEE 354
Query: 424 IRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTLDETLEN 483
IR EL++ L K+G + ++ L+R ++NKLLH P L+ + DE LE
Sbjct: 355 IREEELERALKKLGPG--EDEEEVLEKLARSLVNKLLHAPTVRLKEAAEEGD--DEYLE- 409
Query: 484 MHALNRMFGLETDTS 498
AL +FGL+ ++
Sbjct: 410 --ALRELFGLDPESV 422
|
Length = 423 |
| >gnl|CDD|223450 COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 356 bits (916), Expect = e-119
Identities = 172/409 (42%), Positives = 249/409 (60%), Gaps = 23/409 (5%)
Query: 64 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALS 123
+I+VIG++ TAPVE REKL+ E E A+ +L + IEEA +LSTCNR+EIY V +
Sbjct: 2 NILVIGINHKTAPVEEREKLSFSEEELLEALDQLLHQPSIEEAVILSTCNRVEIYAVVHT 61
Query: 124 QHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQV 183
E+ ++++ G+ + +L ++ ++L ++A +HLF V++GLDSLVLGE QIL QV
Sbjct: 62 G----SELIRFLAELHGLSIEDLGKYLYVLRGEEAVRHLFRVASGLDSLVLGETQILGQV 117
Query: 184 KQVVKVGQ--GVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALMKLPE 241
K Q G +G N LF+ AISVGKRVR+ET I GAVS+SSAAVELA
Sbjct: 118 KDAYAKAQENGTLGKVLNR--LFQKAISVGKRVRSETGIGKGAVSISSAAVELAKRIFG- 174
Query: 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS 301
S ++LVIGAG+MG+LV KHL KG K+ + NR+ ER + ++L L
Sbjct: 175 -SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAE---AVALE 230
Query: 302 EMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR--LFIDISVPRNVGSCVA 359
E+L A+ADVV +ST++ P+ ++ VE A+ + L +DI+VPR+V V
Sbjct: 231 ELLEALAEADVVISSTSAPHPIITRE------MVERALKIRKRLLIVDIAVPRDVEPEVG 284
Query: 360 DVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRA 419
++ +Y +DDL+E+V N E R +A +A+AII EE +F W LE VPTI+ LR
Sbjct: 285 ELPNVFLYTIDDLEEIVEENLEARKEEAAKAEAIIEEELAEFMEWLKKLEVVPTIRALRE 344
Query: 420 YAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLR 468
AE +R EL+K L K+ + + ++ L+R ++NKLLH P L+
Sbjct: 345 QAEDVREEELEKALKKLPN--GEDEEEVLEKLARSLVNKLLHAPTVRLK 391
|
Length = 414 |
| >gnl|CDD|233242 TIGR01035, hemA, glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Score = 329 bits (846), Expect = e-109
Identities = 172/404 (42%), Positives = 251/404 (62%), Gaps = 9/404 (2%)
Query: 65 IVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQ 124
I+V+G+S +APVE+REKL+I E + +A+ L IEEA VLSTCNR+EIY V +
Sbjct: 1 ILVLGVSHKSAPVEVREKLSIDEIKLKKALDTLKAEPSIEEAMVLSTCNRVEIYAVVDNL 60
Query: 125 HRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVK 184
H G + + +++ + +L ++ ++L + A +HLF V++GLDS+V+GE QIL QVK
Sbjct: 61 HEGKSALLQILAENKNMSNEDLEKYLYILTGESAVEHLFRVASGLDSMVVGETQILGQVK 120
Query: 185 QVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALMKLPESSH 244
KV Q G+ + LF+ A SVGKRVRTET+I+AGAVS+SSAAVELA
Sbjct: 121 NAYKVAQEEKTVGKVLERLFQKAFSVGKRVRTETDISAGAVSISSAAVELAERIFGSLKG 180
Query: 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEML 304
A L+IGAG+MG+LV KHL+ KG K+++ NR+ ER + +EL G + ++
Sbjct: 181 KKA--LLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAV---KFEDLE 235
Query: 305 SCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETA 364
A+AD+V +ST + P+ K+ V+ + L IDI+VPR+V VA +E
Sbjct: 236 EYLAEADIVISSTGAPHPIVSKEDVERA--LRERTRPL-FIIDIAVPRDVDPAVARLEGV 292
Query: 365 RVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERI 424
+Y+VDDL+ VV N +R +A +A+ I+ EE+ +F W SLE PTIK LR+ AE +
Sbjct: 293 FLYDVDDLQPVVEENLAERREEAEKAEEIVEEETAEFKQWLRSLEVEPTIKALRSLAEIV 352
Query: 425 RVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLR 468
R EL+K L K+ +SK ++DL+R ++NKLLH P L+
Sbjct: 353 REKELEKALKKLP-GLSKDVEEVLEDLARKLINKLLHAPTVRLK 395
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 417 |
| >gnl|CDD|133452 cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Score = 313 bits (803), Expect = e-103
Identities = 139/323 (43%), Positives = 199/323 (61%), Gaps = 12/323 (3%)
Query: 65 IVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQ 124
I+VIGLS TAPVE+REKLA E E A+ L I EA +LSTCNR+E+Y+V +
Sbjct: 1 ILVIGLSHKTAPVELREKLAFSEEELKEALRRLLEKPGISEAVLLSTCNRVELYLVGDNF 60
Query: 125 HRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVK 184
H+ E+ E +++ P EL E+ ++ +DA +HLF V++GLDS+V+GE QIL QVK
Sbjct: 61 HKLADELEELLAELLNEP--ELREYLYVGRGQDAVRHLFRVASGLDSMVVGETQILGQVK 118
Query: 185 QVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALMKLPESSH 244
K+ + G+ ++ LF+ AI VGKRVRTET I+ GAVS+SSAAVELA
Sbjct: 119 NAYKLAKEAGTSGKLLNRLFQKAIKVGKRVRTETGISRGAVSISSAAVELAEKIFGNLK- 177
Query: 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEML 304
++LVIGAG+MG+L KHL AKG ++ + NR+ ER + +EL G PL E+L
Sbjct: 178 -GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGN---AVPLDELL 233
Query: 305 SCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETA 364
+ADVV ++T + V+ ++ G RL +D++VPR++ V ++E
Sbjct: 234 ELLNEADVVISATGAPHY---AKIVERA--MKKRSGKPRLIVDLAVPRDIEPEVGELEGV 288
Query: 365 RVYNVDDLKEVVAANKEDRLRKA 387
R+Y +DDL+EVV N E R ++A
Sbjct: 289 RLYTIDDLEEVVEENLERREKEA 311
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 311 |
| >gnl|CDD|218494 pfam05201, GlutR_N, Glutamyl-tRNAGlu reductase, N-terminal domain | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 8e-54
Identities = 66/152 (43%), Positives = 100/152 (65%), Gaps = 2/152 (1%)
Query: 68 IGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRG 127
+GL+ TAPVE+REKLA + E A+ EL + EA +LSTCNR+EIY V H
Sbjct: 1 VGLNHKTAPVEIREKLAFSDEELEEALEELKASPGVSEAVILSTCNRVEIYAV--VDHDA 58
Query: 128 VKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVV 187
+++ E++++ SG+ + EL E+ ++ ++A +HLF V++GLDS+VLGE QIL QVK+
Sbjct: 59 SEDLIEFLAELSGLDIEELEEYLYVYEGEEAVRHLFRVASGLDSMVLGEPQILGQVKEAY 118
Query: 188 KVGQGVVGFGRNISGLFKHAISVGKRVRTETN 219
++ + G+ ++ LF+ A V KRVRTET
Sbjct: 119 ELAREAGTVGKILNRLFQKAFRVAKRVRTETG 150
|
Length = 150 |
| >gnl|CDD|216527 pfam01488, Shikimate_DH, Shikimate / quinate 5-dehydrogenase | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 8e-43
Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 10/143 (6%)
Query: 233 ELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG 292
ELA ++L+IGAG+M +L KHL++KG K+ + NR+ E+ + EE
Sbjct: 1 ELAKKIFG--DLKGKKVLLIGAGEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFPV 58
Query: 293 VEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352
PL E+ A+AD+V ++T++ P+ K+ V++ LF+DI+VPR
Sbjct: 59 G-GEALPLDELEELLAEADIVISATSAPTPIITKEMVEEALKARP-----LLFVDIAVPR 112
Query: 353 NVGSCVADVETARVYNVDDLKEV 375
++ ++E VY VDDLKEV
Sbjct: 113 DIEPE--ELEGVYVYTVDDLKEV 133
|
This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyzes the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyzes the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate. Length = 133 |
| >gnl|CDD|172450 PRK13940, PRK13940, glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 1e-42
Identities = 113/433 (26%), Positives = 215/433 (49%), Gaps = 21/433 (4%)
Query: 64 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALS 123
+++ + + +P+E+R + A+ + + ++++ A +LSTCNR E+Y+ +S
Sbjct: 2 ALISLAIDYKKSPIEVRSEFALSGLDVSMLYRSILAIDNVVHAVILSTCNRTEVYL-EIS 60
Query: 124 QHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQV 183
R V ++ W P ++ ++ L + HL +++ GL+S+VLGE QIL QV
Sbjct: 61 DLRVVDDILVWWQGYVRNPNYKIKDYFKLRQGTEVIMHLMKLACGLESMVLGEPQILGQV 120
Query: 184 KQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALMKLPESS 243
K + + G+ + +F+ + KRVR+ET I VSV+ +A+ LA +L S
Sbjct: 121 KDSYTLSKKNHAIGKELDRVFQKVFATAKRVRSETRIGHCPVSVAFSAITLAKRQLDNIS 180
Query: 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEM 303
+ +L+IGAG+ G+L+ +H+ A ++++ NR+ E+ I Y LSE+
Sbjct: 181 --SKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHY--LSEL 236
Query: 304 LSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVET 363
AD++ + + +V D P R+FIDIS+P+ + + ++E
Sbjct: 237 PQLIKKADIIIAAVNVLEYIVTCKYVGDKP---------RVFIDISIPQALDPKLGELEQ 287
Query: 364 ARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAER 423
Y VDD+ V+ NK+ R ++ +AQ II + +++ ++ + IK+L A+
Sbjct: 288 NVYYCVDDINAVIEDNKDKRKYESSKAQKIIVKSLEEYLEKEKAIISNSAIKELFQKADG 347
Query: 424 IRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTLDETLEN 483
+ L+K L+K+ + K + + I K+LH P+ ++ R+ +
Sbjct: 348 LVDLSLEKSLAKIRN--GKDAEEIIKRFAYEIKKKVLHYPVVGMKEASKQGRS-----DC 400
Query: 484 MHALNRMFGLETD 496
+ + RMFGL +
Sbjct: 401 LVCMKRMFGLNVE 413
|
Length = 414 |
| >gnl|CDD|201424 pfam00745, GlutR_dimer, Glutamyl-tRNAGlu reductase, dimerisation domain | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 8e-27
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 6/106 (5%)
Query: 389 EAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAV 448
+A+AII EE ++F W SL VPTI+ LR AE IR EL++ L K+ D+ + +
Sbjct: 2 KAEAIIEEEVEEFLEWLKSLAVVPTIRALREKAEEIREEELERALKKL--DLGEDPEEVL 59
Query: 449 DDLSRGIMNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLE 494
+ L+R + NKLLH P LR + + + AL ++FGL+
Sbjct: 60 EKLARSLTNKLLHAPTVALREAAEEGDGDEL----LDALRKLFGLD 101
|
Length = 101 |
| >gnl|CDD|234810 PRK00676, hemA, glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 6e-13
Identities = 72/298 (24%), Positives = 124/298 (41%), Gaps = 50/298 (16%)
Query: 67 VIGLSVHTAPVEMREK----LAIPEAEW---PRAIGELCNLNHIEEAAV-LSTCNRMEIY 118
V+G+S A ++ RE+ L E R GE E V L TC+R E+Y
Sbjct: 5 VVGISYREAALKEREQVIQILQQFEGSLFFRQRFFGE-------EGDFVLLLTCHRAELY 57
Query: 119 VVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQ 178
++S + ++ P + D HLF V++G+DSL+LGE +
Sbjct: 58 YYSVSPAELQSSLLSEITSLGVRP--------YFYRGLDCFTHLFCVTSGMDSLILGETE 109
Query: 179 ILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALMK 238
I QVK+ + LF+ A+ GK R++ V++ S V+ L +
Sbjct: 110 IQGQVKRAYLKAARERKLPFALHFLFQKALKEGKVFRSKGGAPYAEVTIES-VVQQELRR 168
Query: 239 LPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK 298
+S A +L IG ++ + V +L +G +++ +R + + + Y+
Sbjct: 169 RQKSKK--ASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQ------------LTLPYR 214
Query: 299 PLS-EMLSCAADADVVF---TSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352
+ E LS DV+F + +A P + + D+P R+ D +VPR
Sbjct: 215 TVVREELSFQDPYDVIFFGSSESAYAFPHLSWESLADIPD--------RIVFDFNVPR 264
|
Length = 338 |
| >gnl|CDD|133443 cd01065, NAD_bind_Shikimate_DH, NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 9e-09
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCA 307
++L++GAG + V L G K+V+VNR+ E+ A+ E + I ++
Sbjct: 21 KVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIA-YLDLEELL 79
Query: 308 ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348
A+AD++ +T P+ +K +LP + + + D+
Sbjct: 80 AEADLIINTT----PVGMKPGD-ELPLPPSLLKPGGVVYDV 115
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DHs, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 155 |
| >gnl|CDD|223247 COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 5/103 (4%)
Query: 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG-VEIIYKPLSEMLS 305
R+L++GAG + V L G ++ VVNR+ ER + + + L
Sbjct: 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLE 186
Query: 306 CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348
+AD++ +T P+ + D P + + D+
Sbjct: 187 GLEEADLLINAT----PVGMAGPEGDSPVPAELLPKGAIVYDV 225
|
Length = 283 |
| >gnl|CDD|202773 pfam03807, F420_oxidored, NADP oxidoreductase coenzyme F420-dependent | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 9e-07
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 251 VIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADA 310
+IGAG MG+ + + L A G ++ +R+ E+ AA+ EEL GV+ E +A
Sbjct: 4 IIGAGNMGEALARGLAAAGHEVVIANSRNPEKAAALAEEL-GVKATAVSNEEA---VEEA 59
Query: 311 DVVF--------TSTASEAPLFLKDHV 329
DVVF +E LK +
Sbjct: 60 DVVFLAVKPEDAPEVLAELADLLKGKL 86
|
Length = 93 |
| >gnl|CDD|133446 cd01078, NAD_bind_H4MPT_DH, NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 18/150 (12%)
Query: 221 AAGAVSVSSAAVELAL--MKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVN 277
+ G+ + ++AAV A ++L +V+G G +G+ L+A+ ++V+V
Sbjct: 1 SNGSNTTAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQ-RAAVLLAREGARVVLVG 59
Query: 278 RSEERVAAICEELNGV------EIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQD 331
R ER + L + + + ADVVF + A V+
Sbjct: 60 RDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGA--------AGVEL 111
Query: 332 LPPVEAAVGGLRLFIDISVPRNVGSCVADV 361
L + A L + D++ VG DV
Sbjct: 112 LEKLAWAPKPLAVAADVNAVPPVGIEGIDV 141
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 194 |
| >gnl|CDD|225280 COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 17/115 (14%)
Query: 221 AAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIK-HLVAKGCTKMVVVNRS 279
AA AV+ A + A+ + +IGAG + ++ + ++ V +R
Sbjct: 116 AASAVAAKYLARK----------DAS-TLAIIGAGAQARTQLEALKAVRDIREIRVYSRD 164
Query: 280 E---ERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQD 331
E AA + G + +E AD+V T+T S P+ + ++
Sbjct: 165 PEAAEAFAARLRKRGGEAVGAADSAE--EAVEGADIVVTATPSTEPVLKAEWLKP 217
|
Length = 330 |
| >gnl|CDD|217556 pfam03435, Saccharop_dh, Saccharopine dehydrogenase | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 250 LVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII--------YKPLS 301
L+IGAG +G+ V L G ++ V +RS E+ A+ G+ I Y+ L
Sbjct: 2 LIIGAGGVGQGVAPLLARHGDLEITVADRSLEKAQALAAPKLGLRFIAIAVDADNYEALV 61
Query: 302 EMLSCAADADVV 313
+L + D+V
Sbjct: 62 ALL---KEGDLV 70
|
This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase. Length = 380 |
| >gnl|CDD|223422 COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 246 TARMLVIGAGKMGKLVIKHLVAKGCTK---MVVVNRSEERVAAICEELNGVEIIYKPLSE 302
++ IGAG MG+ ++ L+ G ++V NRSEE+ AA+ E V E
Sbjct: 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVV--TTTDNQE 58
Query: 303 MLSCAADADVVF 314
+ADVVF
Sbjct: 59 A---VEEADVVF 67
|
Length = 266 |
| >gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLS 305
++ V+G GK+G L+ + L G +V+V R E+ A+ L GVE + E S
Sbjct: 156 GDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEK-LALARRL-GVETVL--PDEAES 210
Query: 306 CAADADVVFTSTASEAPL 323
DVV +T S + L
Sbjct: 211 EGGGFDVVVEATGSPSGL 228
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319 |
| >gnl|CDD|234703 PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCA 307
R+L++GAG + VI L+ G ++ +VNR+ ER + + + L E+
Sbjct: 125 RILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDL-ELQEEL 183
Query: 308 ADADVVFTSTAS 319
AD D++ +T++
Sbjct: 184 ADFDLIINATSA 195
|
Length = 278 |
| >gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.002
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 19/91 (20%)
Query: 251 VIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADA 310
IG G MG + +L+ G T + V NR+ E+V + E G + A A
Sbjct: 5 FIGLGVMGSPMALNLLKAGYT-VTVYNRTPEKVEELVAE--GA----VGAASPAEFVASA 57
Query: 311 DVVFTSTASEAPLFLKDHVQDLPPVEAAVGG 341
DVV T V V+A + G
Sbjct: 58 DVVITM------------VPAGAAVDAVILG 76
|
The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163 |
| >gnl|CDD|237008 PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.003
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 251 VIGAGKMGKLVIKHLVAKGC--TKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA 308
IG G M +I L+A G ++V + S E+ AA+ EE GV A
Sbjct: 7 FIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY-GVRAATDNQEA----AQ 61
Query: 309 DADVVF 314
+ADVV
Sbjct: 62 EADVVV 67
|
Length = 267 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 513 | |||
| PLN00203 | 519 | glutamyl-tRNA reductase | 100.0 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 100.0 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 100.0 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 100.0 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 100.0 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 100.0 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 100.0 | |
| PF05201 | 152 | GlutR_N: Glutamyl-tRNAGlu reductase, N-terminal do | 100.0 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 99.9 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 99.81 | |
| PF00745 | 101 | GlutR_dimer: Glutamyl-tRNAGlu reductase, dimerisat | 99.72 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 99.67 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 99.67 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 99.65 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 99.65 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 99.62 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 99.62 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 99.61 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 99.55 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 99.53 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 99.51 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 99.48 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 99.46 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 99.42 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 99.34 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 99.34 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 99.27 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 99.27 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 99.19 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 99.13 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 99.09 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 99.07 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 99.06 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 99.05 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 99.03 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 99.02 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 99.01 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 99.0 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 98.97 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.97 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 98.96 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 98.95 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 98.94 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 98.9 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 98.9 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 98.88 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 98.86 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 98.84 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 98.84 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 98.84 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 98.82 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 98.78 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 98.77 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 98.72 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 98.7 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 98.66 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 98.65 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 98.64 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 98.63 | |
| COG5322 | 351 | Predicted dehydrogenase [General function predicti | 98.62 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 98.61 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 98.61 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 98.61 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 98.6 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 98.55 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 98.54 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 98.52 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 98.52 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 98.46 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 98.44 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.43 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 98.42 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 98.42 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 98.41 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 98.4 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 98.4 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 98.38 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 98.37 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.37 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 98.36 | |
| PLN02702 | 364 | L-idonate 5-dehydrogenase | 98.34 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 98.33 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 98.3 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 98.3 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 98.29 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.24 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 98.24 | |
| cd08287 | 345 | FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik | 98.23 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 98.2 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.2 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 98.18 | |
| cd08299 | 373 | alcohol_DH_class_I_II_IV class I, II, IV alcohol d | 98.15 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 98.14 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 98.12 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 98.11 | |
| cd08256 | 350 | Zn_ADH2 Alcohol dehydrogenases of the MDR family. | 98.1 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 98.1 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 98.1 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 98.1 | |
| cd08269 | 312 | Zn_ADH9 Alcohol dehydrogenases of the MDR family. | 98.06 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 98.04 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 98.03 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 98.0 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 98.0 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 97.99 | |
| PRK05396 | 341 | tdh L-threonine 3-dehydrogenase; Validated | 97.99 | |
| cd05284 | 340 | arabinose_DH_like D-arabinose dehydrogenase. This | 97.98 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 97.97 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 97.96 | |
| cd08282 | 375 | PFDH_like Pseudomonas putida aldehyde-dismutating | 97.93 | |
| PLN02928 | 347 | oxidoreductase family protein | 97.92 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 97.91 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 97.91 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 97.9 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 97.9 | |
| cd08284 | 344 | FDH_like_2 Glutathione-dependent formaldehyde dehy | 97.89 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.89 | |
| PLN02494 | 477 | adenosylhomocysteinase | 97.88 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.88 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 97.87 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.84 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 97.84 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 97.83 | |
| PRK09422 | 338 | ethanol-active dehydrogenase/acetaldehyde-active r | 97.83 | |
| TIGR00692 | 340 | tdh L-threonine 3-dehydrogenase. E. coli His-90 mo | 97.82 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.81 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 97.81 | |
| cd08262 | 341 | Zn_ADH8 Alcohol dehydrogenases of the MDR family. | 97.79 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 97.79 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.78 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 97.78 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 97.76 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 97.75 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 97.74 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 97.74 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 97.74 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 97.73 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 97.71 | |
| cd08235 | 343 | iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ | 97.71 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 97.7 | |
| cd08270 | 305 | MDR4 Medium chain dehydrogenases/reductase (MDR)/z | 97.7 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 97.69 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.68 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 97.67 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 97.67 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 97.67 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 97.66 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 97.66 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 97.65 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 97.65 | |
| cd08258 | 306 | Zn_ADH4 Alcohol dehydrogenases of the MDR family. | 97.64 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 97.64 | |
| cd08264 | 325 | Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam | 97.63 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 97.63 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 97.62 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 97.62 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 97.61 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 97.61 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 97.61 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 97.6 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 97.6 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 97.58 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.58 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 97.58 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 97.57 | |
| cd08260 | 345 | Zn_ADH6 Alcohol dehydrogenases of the MDR family. | 97.57 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 97.57 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 97.56 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 97.56 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.55 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 97.55 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.55 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 97.55 | |
| COG0281 | 432 | SfcA Malic enzyme [Energy production and conversio | 97.54 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 97.53 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 97.53 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.53 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 97.52 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.52 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.52 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.52 | |
| KOG3007 | 333 | consensus Mu-crystallin [Amino acid transport and | 97.52 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 97.51 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 97.51 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 97.51 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 97.5 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 97.5 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 97.49 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 97.49 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 97.48 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.47 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.47 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 97.44 | |
| PRK13771 | 334 | putative alcohol dehydrogenase; Provisional | 97.43 | |
| cd08290 | 341 | ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi | 97.42 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 97.42 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 97.42 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 97.42 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.42 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 97.41 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 97.4 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 97.4 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 97.4 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 97.4 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 97.39 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 97.38 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.38 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.38 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 97.37 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 97.37 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 97.37 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 97.37 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 97.37 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 97.36 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 97.35 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 97.35 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.34 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 97.34 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 97.33 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.33 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 97.32 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 97.32 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.31 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 97.3 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 97.3 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 97.3 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 97.29 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.28 | |
| TIGR01751 | 398 | crot-CoA-red crotonyl-CoA reductase. The enzyme mo | 97.28 | |
| PF03949 | 255 | Malic_M: Malic enzyme, NAD binding domain; InterPr | 97.28 | |
| TIGR02817 | 336 | adh_fam_1 zinc-binding alcohol dehydrogenase famil | 97.27 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.27 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.27 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.27 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 97.27 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.27 | |
| cd05282 | 323 | ETR_like 2-enoyl thioester reductase-like. 2-enoyl | 97.26 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.26 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 97.25 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.25 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 97.25 | |
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 97.23 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.22 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 97.22 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.22 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.22 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 97.22 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.22 | |
| PRK12861 | 764 | malic enzyme; Reviewed | 97.21 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.21 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.2 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.2 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 97.19 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 97.19 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 97.19 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 97.18 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 97.18 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 97.17 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 97.17 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 97.15 | |
| cd08249 | 339 | enoyl_reductase_like enoyl_reductase_like. Member | 97.15 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 97.14 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 97.13 | |
| PRK07232 | 752 | bifunctional malic enzyme oxidoreductase/phosphotr | 97.12 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 97.12 | |
| cd08279 | 363 | Zn_ADH_class_III Class III alcohol dehydrogenase. | 97.11 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 97.11 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 97.1 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 97.1 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 97.09 | |
| PRK12862 | 763 | malic enzyme; Reviewed | 97.08 | |
| smart00829 | 288 | PKS_ER Enoylreductase. Enoylreductase in Polyketid | 97.07 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.07 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 97.06 | |
| PRK08223 | 287 | hypothetical protein; Validated | 97.06 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 97.06 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.05 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.05 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.04 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 97.04 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 97.04 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.02 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 97.02 | |
| cd05195 | 293 | enoyl_red enoyl reductase of polyketide synthase. | 97.02 | |
| PRK10754 | 327 | quinone oxidoreductase, NADPH-dependent; Provision | 97.0 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.0 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 97.0 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.0 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.99 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 96.98 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.98 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.96 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.95 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.95 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 96.95 | |
| cd05280 | 325 | MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone | 96.94 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.92 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.92 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 96.91 | |
| PTZ00354 | 334 | alcohol dehydrogenase; Provisional | 96.91 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.91 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 96.89 | |
| cd08248 | 350 | RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu | 96.89 | |
| cd08252 | 336 | AL_MDR Arginate lyase and other MDR family members | 96.89 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 96.88 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 96.88 | |
| PLN02256 | 304 | arogenate dehydrogenase | 96.88 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 96.88 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 96.84 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 96.84 | |
| cd08276 | 336 | MDR7 Medium chain dehydrogenases/reductase (MDR)/z | 96.84 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.84 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 96.83 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 96.83 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.82 | |
| cd08267 | 319 | MDR1 Medium chain dehydrogenases/reductase (MDR)/z | 96.81 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 96.81 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.79 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 96.78 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.78 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.78 | |
| PLN03129 | 581 | NADP-dependent malic enzyme; Provisional | 96.77 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.77 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 96.77 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.76 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.76 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.76 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 96.74 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.73 | |
| PRK13529 | 563 | malate dehydrogenase; Provisional | 96.73 | |
| PRK07411 | 390 | hypothetical protein; Validated | 96.72 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 96.71 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 96.71 | |
| KOG1197 | 336 | consensus Predicted quinone oxidoreductase [Energy | 96.7 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 96.69 | |
| cd08273 | 331 | MDR8 Medium chain dehydrogenases/reductase (MDR)/z | 96.69 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 96.69 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 96.68 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 96.68 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.68 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 96.67 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.67 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 96.67 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 96.65 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 96.65 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 96.65 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 96.63 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.63 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.63 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 96.62 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 96.61 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 96.61 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 96.6 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 96.6 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 96.6 | |
| PLN02712 | 667 | arogenate dehydrogenase | 96.59 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.57 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 96.56 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.56 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 96.55 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 96.55 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 96.54 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.54 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 96.54 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 96.53 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 96.53 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 96.52 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.52 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.52 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 96.52 | |
| TIGR02823 | 323 | oxido_YhdH putative quinone oxidoreductase, YhdH/Y | 96.49 | |
| cd05289 | 309 | MDR_like_2 alcohol dehydrogenase and quinone reduc | 96.48 | |
| TIGR02824 | 325 | quinone_pig3 putative NAD(P)H quinone oxidoreducta | 96.48 | |
| PRK05717 | 255 | oxidoreductase; Validated | 96.46 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 96.46 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 96.45 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 96.45 | |
| cd08251 | 303 | polyketide_synthase polyketide synthase. Polyketid | 96.44 | |
| PTZ00317 | 559 | NADP-dependent malic enzyme; Provisional | 96.44 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 96.43 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 96.43 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 96.43 | |
| cd08268 | 328 | MDR2 Medium chain dehydrogenases/reductase (MDR)/z | 96.43 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 96.4 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 96.39 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 96.37 | |
| KOG2017 | 427 | consensus Molybdopterin synthase sulfurylase [Coen | 96.37 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.36 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.35 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 96.35 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 96.35 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 96.35 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 96.34 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 96.34 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 96.33 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 96.33 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 96.33 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 96.33 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 96.32 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.31 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 96.31 | |
| PLN02712 | 667 | arogenate dehydrogenase | 96.3 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 96.3 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 96.29 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 96.29 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 96.28 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 96.27 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 96.26 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.26 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 96.26 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 96.25 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 96.25 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 96.24 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.24 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 96.22 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 96.22 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 96.22 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 96.21 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 96.21 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 96.21 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.19 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.19 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 96.18 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.18 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 96.16 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 96.16 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 96.15 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 96.15 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 96.15 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 96.14 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 96.13 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 96.13 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 96.13 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.13 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 96.12 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 96.11 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 96.11 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 96.1 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 96.1 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 96.1 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.08 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 96.08 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 96.08 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 96.06 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 96.06 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 96.04 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 96.03 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 96.03 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.02 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 96.02 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 96.0 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 95.98 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 95.98 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 95.97 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 95.96 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 95.96 | |
| PLN02602 | 350 | lactate dehydrogenase | 95.96 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 95.95 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 95.95 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 95.95 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 95.95 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 95.94 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 95.93 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 95.93 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 95.9 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 95.9 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 95.9 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 95.9 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 95.89 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 95.89 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 95.88 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 95.88 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.88 | |
| cd08272 | 326 | MDR6 Medium chain dehydrogenases/reductase (MDR)/z | 95.87 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 95.86 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 95.86 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 95.85 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 95.85 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 95.84 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 95.84 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 95.82 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 95.8 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 95.79 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 95.79 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 95.78 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 95.78 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 95.76 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 95.74 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 95.74 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 95.71 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 95.7 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 95.69 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 95.69 | |
| PRK08643 | 256 | acetoin reductase; Validated | 95.68 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.67 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 95.67 | |
| cd08271 | 325 | MDR5 Medium chain dehydrogenases/reductase (MDR)/z | 95.67 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 95.67 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 95.67 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 95.66 |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-102 Score=833.87 Aligned_cols=457 Identities=85% Similarity=1.244 Sum_probs=422.4
Q ss_pred CCchHHHHHhhhcCCcccccCcceEEEEEeecCCCCHHHHhhhcCCCCChHHHHHHHhccCCCcceEEeeecCeeEEEEE
Q 010322 41 PSSASALEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVV 120 (513)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~i~~igi~hk~apv~~RE~~a~~~~~~~~~l~~l~~~~~i~e~viLsTCNR~EiY~~ 120 (513)
.++.+||+|||++++||||+|+|+|+++|+||||||+++||||+|++++++.++.+|+..+++.|++|||||||||||++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~i~~ig~shktapveiREkla~~~~~~~~~l~~l~~~~~i~e~viLSTCNR~EiY~~ 140 (519)
T PLN00203 61 AASASALEQLKNSAADRYTKEKSSIVVIGLSIHTAPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVV 140 (519)
T ss_pred cchHHHHHHHHHhhhhhHHHhcCeEEEEEEeCCcCCHHHHHHhcCCHHHHHHHHHHHHhcCCcceEEEEeccCeEEEEEE
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccHHHHHHHHHHhcCCChhhhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchh
Q 010322 121 ALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNI 200 (513)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L 200 (513)
+++.+.+.+.+.+||++++|++.+++.+++|.+.|.||+.|||+|+|||||||+||+||+||||+||..|++.|++|+.|
T Consensus 141 ~~~~~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~g~~Av~HLfrVasGLDSmVlGE~QIlgQVK~A~~~A~~~g~~g~~L 220 (519)
T PLN00203 141 ALSWHRGVKEVTEWMSKTSGIPVSELRQHLFLLYDKDATQHLFEVSGGLDSLVLGEGQILAQVKQVVKVGQGVDGFGRNL 220 (519)
T ss_pred ecCcchhHHHHHHHHHHhcCCCHHHHhhhheeecCHHHHHHHHHHHhhhhhhhhCChHHHHHHHHHHHHHHHcCCccHHH
Confidence 87666677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhCccccccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 201 SGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 201 ~~lf~~ai~v~k~Vr~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
+++|+.|++++|+||++|+|+.+++|++++||+++++.|+.+++.+++|+|||+|.||++++++|...|+.+|+++||+.
T Consensus 221 ~~LF~~Ai~~~KrVRteT~I~~~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~ 300 (519)
T PLN00203 221 SGLFKHAITAGKRVRTETNIASGAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSE 300 (519)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 99999999999999999999999999999999999998852248899999999999999999999999998899999999
Q ss_pred HHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCccccc
Q 010322 281 ERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVAD 360 (513)
Q Consensus 281 ~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~ 360 (513)
++++.++..+++..+.+.+++++.+.+.++|+||+||++++|+++.++++.+++.+.+.++++++||+++||||+|.+.+
T Consensus 301 era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v~~ 380 (519)
T PLN00203 301 ERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACVSE 380 (519)
T ss_pred HHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCcccccc
Confidence 99999999886433345567777788899999999999999999999998764322222467899999999999999999
Q ss_pred ccCeEEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010322 361 VETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDI 440 (513)
Q Consensus 361 l~gv~ly~iDdl~~v~~~~~~~R~~~~~~ae~iI~e~~~~f~~w~~~~~~~p~I~~lr~~~e~i~~~el~~~~~kl~~~~ 440 (513)
++|+++||+|||+.+++.|.+.|..++..|+.||++++.+|..|++.+.+.|+|++||+++++|++.||+|+++||++++
T Consensus 381 l~~v~lydiDdL~~i~~~n~~~R~~~~~~Ae~II~ee~~~F~~w~~~~~~~p~I~~lr~~~~~i~~~Eler~~~kl~~~~ 460 (519)
T PLN00203 381 LESARVYNVDDLKEVVAANKEDRLRKAMEAQTIIREESKNFEAWRDSLETVPTIKKLRSYAERIRAAELEKCLSKMGDDL 460 (519)
T ss_pred CCCCeEEEeccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997668
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhHHHHHhhcCCCCCchhhhHHHHHHHHHHhCCCCCc
Q 010322 441 SKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDT 497 (513)
Q Consensus 441 ~~~~~~~i~~~~~~~~~k~lh~P~~~lk~~~~~~~~~~~~~~~~~~~~~lf~l~~~~ 497 (513)
++++++.|++++++++|||||.|+.+||+.+.++...++.+.+++++++||+|+.++
T Consensus 461 ~~~~~~~ie~~~~~ivnkllh~P~~~Lr~~a~~~~~~~~~~~~~~~l~~lF~l~~~~ 517 (519)
T PLN00203 461 TKKQRKAVEDLSRGIVNKLLHGPMQHLRCDGSDSRTVSETLENMHALNRMFDLETEI 517 (519)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHhCCCccc
Confidence 999999999999999999999999999985532222234467999999999998774
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-92 Score=746.44 Aligned_cols=413 Identities=26% Similarity=0.433 Sum_probs=385.8
Q ss_pred ceEEEEEeecCCCCHHHHhhhcCCCCChHHHHHHHhccCCCcceEEeeecCeeEEEEEeccccccHHHHHHHHHHhcCCC
Q 010322 63 SSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIP 142 (513)
Q Consensus 63 ~~i~~igi~hk~apv~~RE~~a~~~~~~~~~l~~l~~~~~i~e~viLsTCNR~EiY~~~~~~~~~~~~~~~~l~~~~~~~ 142 (513)
|+|+++|+||||||+++||||+|+++++..++..|+..+++.|++|||||||||||+++++. .....+..|++.+.+.+
T Consensus 1 M~l~~vg~~hktapi~irEk~a~~~~~~~~~l~~l~~~~~i~e~viLsTCNR~EiY~~~~~~-~~~~~~~~~l~~~~~~~ 79 (414)
T PRK13940 1 MALISLAIDYKKSPIEVRSEFALSGLDVSMLYRSILAIDNVVHAVILSTCNRTEVYLEISDL-RVVDDILVWWQGYVRNP 79 (414)
T ss_pred CeEEEEEEeCccCCHHHHHHhcCCHHHHHHHHHHHhcCCCCceEEEEecCCeEEEEEEeCCc-chHHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999999999999999999999999999999987543 35678889999999999
Q ss_pred hhhhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccccC
Q 010322 143 VAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAA 222 (513)
Q Consensus 143 ~~~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~~ 222 (513)
.+++.+++|.+.|.||+.|||+|+|||||||+||+||+||||+||..|++.|++|+.|+.+|+.|++++|+||++|+|+.
T Consensus 80 ~~~~~~~~~~~~g~~Av~HLfrVasGLdSmVlGE~QIlgQVK~A~~~A~~~g~~g~~L~~lf~~A~~~aKrVrteT~I~~ 159 (414)
T PRK13940 80 NYKIKDYFKLRQGTEVIMHLMKLACGLESMVLGEPQILGQVKDSYTLSKKNHAIGKELDRVFQKVFATAKRVRSETRIGH 159 (414)
T ss_pred HHHHHhHHHhhccHHHHHHHHHHHhccchhhcCcHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccch
Q 010322 223 GAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSE 302 (513)
Q Consensus 223 ~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~ 302 (513)
+++|++++||+++++.+ +++.+++|+|||+|+||++++.+|...|+.+|+|+||+.++++.++++++. ..+.++++
T Consensus 160 ~~vSv~~~Av~la~~~~--~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~--~~~~~~~~ 235 (414)
T PRK13940 160 CPVSVAFSAITLAKRQL--DNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRN--ASAHYLSE 235 (414)
T ss_pred CCcCHHHHHHHHHHHHh--cCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcC--CeEecHHH
Confidence 99999999999999988 478999999999999999999999999999999999999999999999863 24567888
Q ss_pred HHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEccCCHHHHHHHHHHH
Q 010322 303 MLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKED 382 (513)
Q Consensus 303 ~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~iDdl~~v~~~~~~~ 382 (513)
+.+.+..+|+||+||++|+|+|+.+.+. ++|.++||+++||||||.+.+++|+++||+||++.+++.|.+.
T Consensus 236 l~~~l~~aDiVI~aT~a~~~vi~~~~~~---------~~~~~~iDLavPRdidp~v~~l~~v~l~~iDdl~~i~~~n~~~ 306 (414)
T PRK13940 236 LPQLIKKADIIIAAVNVLEYIVTCKYVG---------DKPRVFIDISIPQALDPKLGELEQNVYYCVDDINAVIEDNKDK 306 (414)
T ss_pred HHHHhccCCEEEECcCCCCeeECHHHhC---------CCCeEEEEeCCCCCCCccccCcCCeEEEeHHHHHHHHHHHHHH
Confidence 8888999999999999999999876642 3568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhh
Q 010322 383 RLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHG 462 (513)
Q Consensus 383 R~~~~~~ae~iI~e~~~~f~~w~~~~~~~p~I~~lr~~~e~i~~~el~~~~~kl~~~~~~~~~~~i~~~~~~~~~k~lh~ 462 (513)
|..++..|+.||++++..|..|+..+.+.|+|++||++++++++.|++|++++|+ .++++++.+++++++++|||||.
T Consensus 307 R~~~~~~a~~iI~e~~~~f~~w~~~~~~~p~I~~lr~~~~~i~~~el~r~~~~l~--~~~~~~~~i~~~~~~~~~kllh~ 384 (414)
T PRK13940 307 RKYESSKAQKIIVKSLEEYLEKEKAIISNSAIKELFQKADGLVDLSLEKSLAKIR--NGKDAEEIIKRFAYEIKKKVLHY 384 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcC--CCccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999995 37889999999999999999999
Q ss_pred HHHHHhhcCCCCCchhhhHHHHHHHHHHhCCCCC
Q 010322 463 PMQHLRCDGSDSRTLDETLENMHALNRMFGLETD 496 (513)
Q Consensus 463 P~~~lk~~~~~~~~~~~~~~~~~~~~~lf~l~~~ 496 (513)
|+..||+.+.++. .+++++++++|+++.+
T Consensus 385 P~~~lk~~~~~~~-----~~~~~~~~~lf~l~~~ 413 (414)
T PRK13940 385 PVVGMKEASKQGR-----SDCLVCMKRMFGLNVE 413 (414)
T ss_pred HHHHHHHhhccCh-----HHHHHHHHHHhCCCCC
Confidence 9999997543221 3688999999999765
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-92 Score=733.30 Aligned_cols=413 Identities=42% Similarity=0.660 Sum_probs=390.2
Q ss_pred ceEEEEEeecCCCCHHHHhhhcCCCCChHHHHHHHhccCCCcceEEeeecCeeEEEEEeccccccHHHHHHHHHHhcCCC
Q 010322 63 SSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIP 142 (513)
Q Consensus 63 ~~i~~igi~hk~apv~~RE~~a~~~~~~~~~l~~l~~~~~i~e~viLsTCNR~EiY~~~~~~~~~~~~~~~~l~~~~~~~ 142 (513)
|+|.+||+||||||+++|||++|++++....+..|...+.+.|++|||||||+|||+++ +.+. .+.+|++++++++
T Consensus 1 m~i~~igi~hkta~ve~rEk~~~~~~~~~~~l~~l~~~~~~~e~viLsTCNR~EiY~~~---~~~~-~~~~~l~~~~~~~ 76 (414)
T COG0373 1 MNILVIGINHKTAPVEEREKLSFSEEELLEALDQLLHQPSIEEAVILSTCNRVEIYAVV---HTGS-ELIRFLAELHGLS 76 (414)
T ss_pred CeEEEEEeecccCCHHHHHHhcCCcHHHHHHHHHHhhcccccceEEEecCCeEEEEEEe---cccc-chhHHHHHhcCCC
Confidence 78999999999999999999999999999998888999999999999999999999987 3455 7889999999999
Q ss_pred hhhhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccccC
Q 010322 143 VAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAA 222 (513)
Q Consensus 143 ~~~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~~ 222 (513)
.+++.+++|++.|.+|+.|||+|+|||||||+||+||+||||+||..|++.|++|+.|+.+|++|+++||+||++|+|+.
T Consensus 77 ~~~l~~~~~v~~~~~Av~HLfrVAsGLDSmVlGE~QILGQVK~Ay~~a~~~g~~g~~L~~lFqkAi~~gKrvRseT~I~~ 156 (414)
T COG0373 77 IEDLGKYLYVLRGEEAVRHLFRVASGLDSLVLGETQILGQVKDAYAKAQENGTLGKVLNRLFQKAISVGKRVRSETGIGK 156 (414)
T ss_pred hhhhccCeEEEcCHHHHHHHHHHhccchhhhcCcHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccch
Q 010322 223 GAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSE 302 (513)
Q Consensus 223 ~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~ 302 (513)
+++|++++||++|+..| +++.+++|+|||||.||.+++++|...|+.+|+|+|||.+|+.+||+++++ .+.++++
T Consensus 157 ~~VSi~saAv~lA~~~~--~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~---~~~~l~e 231 (414)
T COG0373 157 GAVSISSAAVELAKRIF--GSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA---EAVALEE 231 (414)
T ss_pred CccchHHHHHHHHHHHh--cccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC---eeecHHH
Confidence 99999999999999998 479999999999999999999999999999999999999999999999984 5778899
Q ss_pred HHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEccCCHHHHHHHHHHH
Q 010322 303 MLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKED 382 (513)
Q Consensus 303 ~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~iDdl~~v~~~~~~~ 382 (513)
+.+.+..+||||+||++|+|+++.+.++.+.+.+ ..+++||+++|||++|.+..++|+++|++||++.+++.|.+.
T Consensus 232 l~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r----~~~livDiavPRdie~~v~~l~~v~l~~iDDL~~iv~~n~~~ 307 (414)
T COG0373 232 LLEALAEADVVISSTSAPHPIITREMVERALKIR----KRLLIVDIAVPRDVEPEVGELPNVFLYTIDDLEEIVEENLEA 307 (414)
T ss_pred HHHhhhhCCEEEEecCCCccccCHHHHHHHHhcc----cCeEEEEecCCCCCCccccCcCCeEEEehhhHHHHHHHhHHH
Confidence 9999999999999999999999999998765432 227999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhh
Q 010322 383 RLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHG 462 (513)
Q Consensus 383 R~~~~~~ae~iI~e~~~~f~~w~~~~~~~p~I~~lr~~~e~i~~~el~~~~~kl~~~~~~~~~~~i~~~~~~~~~k~lh~ 462 (513)
|.+.+..++.||++++..|..|++.+.+.|+|+++|++++.++++|++|++++|+. ++.+++++++++++++||+||.
T Consensus 308 R~~~~~~ae~iIeee~~~~~~~l~~~~~~~~i~~lr~~a~~v~~~ele~a~~~l~~--~~~~~evl~~~~~si~nk~L~~ 385 (414)
T COG0373 308 RKEEAAKAEAIIEEELAEFMEWLKKLEVVPTIRALREQAEDVREEELEKALKKLPN--GEDEEEVLEKLARSLVNKLLHA 385 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhccC--CCchHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999985 5677899999999999999999
Q ss_pred HHHHHhhcCCCCCchhhhHHHHHHHHHHhCCCC
Q 010322 463 PMQHLRCDGSDSRTLDETLENMHALNRMFGLET 495 (513)
Q Consensus 463 P~~~lk~~~~~~~~~~~~~~~~~~~~~lf~l~~ 495 (513)
|+..||+....+ ..+++++++++|+++.
T Consensus 386 pt~~lk~~a~~~-----~~~~~~~~~~lf~~~~ 413 (414)
T COG0373 386 PTVRLKEAAKEG-----SEELLRALRELFNLDE 413 (414)
T ss_pred HHHHHHHHHhcc-----cHHHHHHHHHHhcccC
Confidence 999999865322 2578999999999975
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-85 Score=692.40 Aligned_cols=417 Identities=42% Similarity=0.629 Sum_probs=384.6
Q ss_pred EEEEEeecCCCCHHHHhhhcCCCCChHHHHHHHhccCCCcceEEeeecCeeEEEEEeccccccHHHHHHHHHHhcCCChh
Q 010322 65 IVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVA 144 (513)
Q Consensus 65 i~~igi~hk~apv~~RE~~a~~~~~~~~~l~~l~~~~~i~e~viLsTCNR~EiY~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (513)
|+++|+||||||+++||||+|+++++..++..|.+.+++.|++|||||||||||+++++.+.....+.+||++++|++.+
T Consensus 1 ~~~ig~~hk~a~i~~re~~~~~~~~~~~~l~~l~~~~~~~e~viLsTCNR~EiY~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (417)
T TIGR01035 1 ILVLGVSHKSAPVEVREKLSIDEIKLKKALDTLKAEPSIEEAMVLSTCNRVEIYAVVDNLHEGKSALLQILAENKNMSNE 80 (417)
T ss_pred CEEEEEeCCcCCHHHHHHhcCCHHHHHHHHHHHHhcCCCceEEEEecCCeEEEEEEeCCcchhHHHHHHHHHHHcCCCHH
Confidence 57899999999999999999999999999999999999999999999999999998766555667889999999999999
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccccCCC
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGA 224 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~~~~ 224 (513)
++.+++|.+.|.||++|||+|++||||||+||+||+||||.||+.|++.+++|+.|+++|++|++++|+||++|+|+.++
T Consensus 81 ~~~~~~~~~~~~~a~~hl~~Va~GldS~V~GE~qI~gQvk~a~~~a~~~~~~g~~l~~lf~~a~~~~k~vr~~t~i~~~~ 160 (417)
T TIGR01035 81 DLEKYLYILTGESAVEHLFRVASGLDSMVVGETQILGQVKNAYKVAQEEKTVGKVLERLFQKAFSVGKRVRTETDISAGA 160 (417)
T ss_pred HHHhHHHhcCchHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHH
Q 010322 225 VSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEML 304 (513)
Q Consensus 225 ~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~ 304 (513)
+|++++||+++.+.+ +++.+++|+|+|+|+||..++++|...|+.+|+++||+.+++..+++.++. ...+++++.
T Consensus 161 vSv~~~Av~la~~~~--~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~---~~i~~~~l~ 235 (417)
T TIGR01035 161 VSISSAAVELAERIF--GSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG---EAVKFEDLE 235 (417)
T ss_pred cCHHHHHHHHHHHHh--CCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC---eEeeHHHHH
Confidence 999999999998877 468999999999999999999999999988899999999999889998874 233556777
Q ss_pred hhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEccCCHHHHHHHHHHHHH
Q 010322 305 SCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRL 384 (513)
Q Consensus 305 ~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~iDdl~~v~~~~~~~R~ 384 (513)
+.+.++|+||+||++++|+++.++++...+. +.++.+++|+++|||++|.+.+++|+++|++||+.+++++|.+.|.
T Consensus 236 ~~l~~aDvVi~aT~s~~~ii~~e~l~~~~~~---~~~~~~viDla~Prdid~~v~~l~~v~l~~vDdl~~~~~~n~~~r~ 312 (417)
T TIGR01035 236 EYLAEADIVISSTGAPHPIVSKEDVERALRE---RTRPLFIIDIAVPRDVDPAVARLEGVFLYDVDDLQPVVEENLAERR 312 (417)
T ss_pred HHHhhCCEEEECCCCCCceEcHHHHHHHHhc---CCCCeEEEEeCCCCCCChhhcCcCCeEEEEHHHHHHHHHHhHHHHH
Confidence 7888999999999999999998888764321 1256799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHH
Q 010322 385 RKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPM 464 (513)
Q Consensus 385 ~~~~~ae~iI~e~~~~f~~w~~~~~~~p~I~~lr~~~e~i~~~el~~~~~kl~~~~~~~~~~~i~~~~~~~~~k~lh~P~ 464 (513)
.++..|+.||++++..|..|++.+.+.|+|++||++++++++.|++|++++|+ ++++++++.+++++++++|||||.|+
T Consensus 313 ~~~~~a~~ii~~~~~~f~~w~~~~~~~p~I~~lr~~~~~i~~~el~~~~~~l~-~~~~~~~~~~~~~~~~~~~k~lh~p~ 391 (417)
T TIGR01035 313 EEAEKAEEIVEEETAEFKQWLRSLEVEPTIKALRSLAEIVREKELEKALKKLP-GLSKDVEEVLEDLARKLINKLLHAPT 391 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999986 47899999999999999999999999
Q ss_pred HHHhhcCCCCCchhhhHHHHHHHHHHhCCC
Q 010322 465 QHLRCDGSDSRTLDETLENMHALNRMFGLE 494 (513)
Q Consensus 465 ~~lk~~~~~~~~~~~~~~~~~~~~~lf~l~ 494 (513)
..||+....+. ...++++++++|+++
T Consensus 392 ~~lk~~~~~~~----~~~~~~~~~~lf~l~ 417 (417)
T TIGR01035 392 VRLKQLADKEE----SEVCLEALKNLFGLE 417 (417)
T ss_pred HHHHHHhcCCC----hHHHHHHHHHHhCcC
Confidence 99997443221 246899999999975
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-84 Score=689.21 Aligned_cols=420 Identities=41% Similarity=0.636 Sum_probs=386.6
Q ss_pred ceEEEEEeecCCCCHHHHhhhcCCCCChHHHHHHHhccCCCcceEEeeecCeeEEEEEeccccccHHHHHHHHHHhcCCC
Q 010322 63 SSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIP 142 (513)
Q Consensus 63 ~~i~~igi~hk~apv~~RE~~a~~~~~~~~~l~~l~~~~~i~e~viLsTCNR~EiY~~~~~~~~~~~~~~~~l~~~~~~~ 142 (513)
|+|.++|+||||||+++||+|+|+++++..++..|.+.+++.|++|||||||||||+++++.+...+.+.+||+.++|++
T Consensus 1 m~~~~ig~~hk~a~i~~re~~~~~~~~~~~~~~~l~~~~~~~e~viLsTCNR~EiY~~~~~~~~~~~~~~~~l~~~~~~~ 80 (423)
T PRK00045 1 MSLLAVGLNHKTAPVELREKLAFSEDELEEALESLLASPSVLEAVILSTCNRTEIYAVVDQFHAGREAIIRWLAEYHGLD 80 (423)
T ss_pred CeEEEEEEeCCcCCHHHHHHhcCCHHHHHHHHHHHhcCCCCceEEEEecCCeEEEEEEeCCccchHHHHHHHHHHHhCCC
Confidence 78999999999999999999999999999999999999999999999999999999987654555667889999999999
Q ss_pred hhhhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccccC
Q 010322 143 VAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAA 222 (513)
Q Consensus 143 ~~~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~~ 222 (513)
.+++.+++|.+.||||++|||+|++||||||+||+||+||||+||+.|++.|++|+.++++|+++++++|+++++|+++.
T Consensus 81 ~~~~~~~~~~~~g~ea~~hl~~V~~GldS~V~GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a~~~~k~v~~~t~i~~ 160 (423)
T PRK00045 81 LEELRPYLYVHEGEEAVRHLFRVASGLDSMVLGEPQILGQVKDAYALAQEAGTVGTILNRLFQKAFSVAKRVRTETGIGA 160 (423)
T ss_pred HHHHhhhHhhcCCHHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhHhhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccch
Q 010322 223 GAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSE 302 (513)
Q Consensus 223 ~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~ 302 (513)
+|+|++++|++++...+ +++.+++|+|+|+|+||++++++|...|+.+|+++||+++++..++..++. .+.++++
T Consensus 161 ~~~Sv~~~Av~~a~~~~--~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~---~~~~~~~ 235 (423)
T PRK00045 161 GAVSVASAAVELAKQIF--GDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG---EAIPLDE 235 (423)
T ss_pred CCcCHHHHHHHHHHHhh--CCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC---cEeeHHH
Confidence 99999999999988766 368899999999999999999999999998899999999999899999874 2445567
Q ss_pred HHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEccCCHHHHHHHHHHH
Q 010322 303 MLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKED 382 (513)
Q Consensus 303 ~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~iDdl~~v~~~~~~~ 382 (513)
..+.+.++|+||+||++++|+++.++++.+...+ .+++.+++|+++|||++|.+.+++|+++|++||++++++.|.+.
T Consensus 236 ~~~~l~~aDvVI~aT~s~~~~i~~~~l~~~~~~~--~~~~~vviDla~Prdid~~v~~l~~v~l~~vDdl~~~~~~n~~~ 313 (423)
T PRK00045 236 LPEALAEADIVISSTGAPHPIIGKGMVERALKAR--RHRPLLLVDLAVPRDIEPEVGELPGVYLYDVDDLQEIVEENLAQ 313 (423)
T ss_pred HHHHhccCCEEEECCCCCCcEEcHHHHHHHHhhc--cCCCeEEEEeCCCCCCcccccccCCeEEEEHHHHHHHHHhhHHH
Confidence 7777889999999999999999988887643211 24679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhh
Q 010322 383 RLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHG 462 (513)
Q Consensus 383 R~~~~~~ae~iI~e~~~~f~~w~~~~~~~p~I~~lr~~~e~i~~~el~~~~~kl~~~~~~~~~~~i~~~~~~~~~k~lh~ 462 (513)
|..++..|+.||+++++.|..|++.+.+.|+|++||++++++++.|++|++++|+. ++++++.+++++++++|||||.
T Consensus 314 r~~~~~~a~~ii~~~~~~f~~~~~~~~~~p~I~~lr~~~~~i~~~el~~~~~~l~~--~~~~~~~~~~~~~~~~~k~lh~ 391 (423)
T PRK00045 314 RQEAAEKAEAIVEEEVAEFMEWLRSLEVVPTIRALREQAEEIREEELERALKKLGP--GEDEEEVLEKLARSLVNKLLHA 391 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhccC--CccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999963 5688999999999999999999
Q ss_pred HHHHHhhcCCCCCchhhhHHHHHHHHHHhCCCCC
Q 010322 463 PMQHLRCDGSDSRTLDETLENMHALNRMFGLETD 496 (513)
Q Consensus 463 P~~~lk~~~~~~~~~~~~~~~~~~~~~lf~l~~~ 496 (513)
|+.+||+...+. ..+++++++++|+++.+
T Consensus 392 p~~~lr~~~~~~-----~~~~~~~~~~~f~~~~~ 420 (423)
T PRK00045 392 PTVRLKEAAEEG-----DDEYLEALRELFGLDPE 420 (423)
T ss_pred HHHHHHhhcccC-----hHHHHHHHHHHhCCCCc
Confidence 999999843222 24689999999998765
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-68 Score=538.94 Aligned_cols=310 Identities=22% Similarity=0.269 Sum_probs=261.4
Q ss_pred ceEEEEEeecCCCCHHHHhhhcCCCCChHHH-HHHHhccCCCcceEEeeecCeeEEEEEeccccccHHHHHHHHHHhcCC
Q 010322 63 SSIVVIGLSVHTAPVEMREKLAIPEAEWPRA-IGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGI 141 (513)
Q Consensus 63 ~~i~~igi~hk~apv~~RE~~a~~~~~~~~~-l~~l~~~~~i~e~viLsTCNR~EiY~~~~~~~~~~~~~~~~l~~~~~~ 141 (513)
|+|.++|+||||||+++||+|+|...+.... +..+...+++.|++|||||||||||+++++.+...+.+.+|+++. +.
T Consensus 1 M~l~viGinhktapv~iREkla~~~~~~~~~~~~~~~~~~~~~e~viLSTCNRtEiY~~~~~~~~~~~~~~~~l~~~-~~ 79 (338)
T PRK00676 1 MVLGVVGISYREAALKEREQVIQILQQFEGSLFFRQRFFGEEGDFVLLLTCHRAELYYYSVSPAELQSSLLSEITSL-GV 79 (338)
T ss_pred CEEEEEEEeCCcCCHHHHHHHhcCCchhhHHHHhhhccccCcccEEEEecCCcEEEEEEeCCchhHHHHHHHHHHhc-CC
Confidence 7899999999999999999999976554322 111222357889999999999999998754333445677888763 22
Q ss_pred ChhhhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCcccccccccc
Q 010322 142 PVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIA 221 (513)
Q Consensus 142 ~~~~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~ 221 (513)
..|.+.|.||+.|||+|+|||||||+||+||+||||+||..|++.|++|+.|+.+|+.|++++|+||++|+|+
T Consensus 80 -------~~y~~~g~~Av~HLfrVasGLDSmVlGE~QIlGQVK~Ay~~A~~~g~~g~~L~~lf~~A~~~aKrVRteT~I~ 152 (338)
T PRK00676 80 -------RPYFYRGLDCFTHLFCVTSGMDSLILGETEIQGQVKRAYLKAARERKLPFALHFLFQKALKEGKVFRSKGGAP 152 (338)
T ss_pred -------cceeecCHHHHHHHHHHhcccchhhcCcHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 2477999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc
Q 010322 222 AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS 301 (513)
Q Consensus 222 ~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~ 301 (513)
.+++|++++|+.+++. + +++.+++|+|||+|+||++++++|...|+.+|+|+|||..+. .++.. +.
T Consensus 153 ~~~vSv~s~av~~~~~-~--~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~-----~~~~~-----~~- 218 (338)
T PRK00676 153 YAEVTIESVVQQELRR-R--QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL-----PYRTV-----VR- 218 (338)
T ss_pred CCCcCHHHHHHHHHHH-h--CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc-----chhhh-----hh-
Confidence 9999999999998855 5 579999999999999999999999999999999999997531 12110 00
Q ss_pred hHHhhcCCCcEEEEc---CCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEccCCHHHHHHH
Q 010322 302 EMLSCAADADVVFTS---TASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAA 378 (513)
Q Consensus 302 ~~~~~l~~aDVVI~A---T~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~iDdl~~v~~~ 378 (513)
+.......+||||+| |++|+|+++.+.++.. .++++||+|+||||+| +..++++++||+||++.+++.
T Consensus 219 ~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~--------~~r~~iDLAvPRdId~-v~~~~~v~Ly~iDdL~~i~~~ 289 (338)
T PRK00676 219 EELSFQDPYDVIFFGSSESAYAFPHLSWESLADI--------PDRIVFDFNVPRTFPW-SETPFPHRYLDMDFISEWVQK 289 (338)
T ss_pred hhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhc--------cCcEEEEecCCCCCcc-ccccCCcEEEEhHHHHHHHHH
Confidence 111334689999997 8899999998877542 1259999999999998 888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010322 379 NKEDRLRKAMEAQAIITEESKQFAA 403 (513)
Q Consensus 379 ~~~~R~~~~~~ae~iI~e~~~~f~~ 403 (513)
|...|.+++.+++.||++.+..|..
T Consensus 290 n~~~R~~~~~~ae~iI~~~~~~~~~ 314 (338)
T PRK00676 290 HLQCRKEVNNKHKLSLREAAYKQWE 314 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998865443
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-68 Score=542.57 Aligned_cols=309 Identities=44% Similarity=0.652 Sum_probs=279.7
Q ss_pred EEEEEeecCCCCHHHHhhhcCCCCChHHHHHHHhccCCCcceEEeeecCeeEEEEEeccccccHHHHHHHHHHhcCCChh
Q 010322 65 IVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVA 144 (513)
Q Consensus 65 i~~igi~hk~apv~~RE~~a~~~~~~~~~l~~l~~~~~i~e~viLsTCNR~EiY~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (513)
|.++|+|||++|+++||||+|+++++.+++..|++.+++.|++|||||||||||+++++.+...+.+.+|+++.+|++
T Consensus 1 l~~ig~~hk~a~i~~re~~~~~~~~~~~~l~~l~~~~~~~e~viLsTCNR~EiY~~~~~~~~~~~~~~~~l~~~~~~~-- 78 (311)
T cd05213 1 ILVIGLSHKTAPVELREKLAFSEEELKEALRRLLEKPGISEAVLLSTCNRVELYLVGDNFHKLADELEELLAELLNEP-- 78 (311)
T ss_pred CEEEEEeCCcCCHHHHHHhcCCHHHHHHHHHHHhcCCCCceEEEEecCCeEEEEEEeCCcchhHHHHHHHHHHhcCch--
Confidence 478999999999999999999999999999999999999999999999999999987655556778899999999998
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccccCCC
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGA 224 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~~~~ 224 (513)
++.+++|.+.|.||+.|||+|+|||||||+||+||+||||+||..|++.|++|+.|+.+|+.|++++|+|+++|+++.+|
T Consensus 79 ~~~~~~~~~~~~~a~~HLf~Va~GLdS~v~GE~qIlgQvk~A~~~a~~~g~~~~~L~~lf~~a~~~~k~vr~et~i~~~~ 158 (311)
T cd05213 79 ELREYLYVGRGQDAVRHLFRVASGLDSMVVGETQILGQVKNAYKLAKEAGTSGKLLNRLFQKAIKVGKRVRTETGISRGA 158 (311)
T ss_pred HhhhhheeecCHHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHH
Q 010322 225 VSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEML 304 (513)
Q Consensus 225 ~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~ 304 (513)
+|++++|++++...+ +++.+++|+|||+|+||+.++++|...|+.+|+++||+++++.+++++++. .+.+++++.
T Consensus 159 ~sv~~~Av~~a~~~~--~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~---~~~~~~~~~ 233 (311)
T cd05213 159 VSISSAAVELAEKIF--GNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG---NAVPLDELL 233 (311)
T ss_pred cCHHHHHHHHHHHHh--CCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC---eEEeHHHHH
Confidence 999999999998877 368899999999999999999999998988999999999999999999875 344556777
Q ss_pred hhcCCCcEEEEcCCCCcc-CCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEccCCHHHHHHHHHHHH
Q 010322 305 SCAADADVVFTSTASEAP-LFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDR 383 (513)
Q Consensus 305 ~~l~~aDVVI~AT~s~~~-vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~iDdl~~v~~~~~~~R 383 (513)
+.+..+|+||+||+++++ .+....+... .+++.++||+++|||++|.+.++||+++|++|||+.++++|.+.|
T Consensus 234 ~~l~~aDvVi~at~~~~~~~~~~~~~~~~------~~~~~~viDlavPrdi~~~v~~l~~v~l~~vDdl~~~~~~n~~~r 307 (311)
T cd05213 234 ELLNEADVVISATGAPHYAKIVERAMKKR------SGKPRLIVDLAVPRDIEPEVGELEGVRLYTIDDLEEVVEENLERR 307 (311)
T ss_pred HHHhcCCEEEECCCCCchHHHHHHHHhhC------CCCCeEEEEeCCCCCCchhhccCCCcEEEEHHHhHHHHHHhHHHH
Confidence 778899999999999988 1112222211 245689999999999999999999999999999999999998877
Q ss_pred HHH
Q 010322 384 LRK 386 (513)
Q Consensus 384 ~~~ 386 (513)
.++
T Consensus 308 ~~~ 310 (311)
T cd05213 308 EKE 310 (311)
T ss_pred Hhc
Confidence 653
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PF05201 GlutR_N: Glutamyl-tRNAGlu reductase, N-terminal domain; InterPro: IPR015895 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=329.48 Aligned_cols=152 Identities=45% Similarity=0.717 Sum_probs=120.0
Q ss_pred EEeecCCCCHHHHhhhcCCCCChHHHHHHHhccCCCcceEEeeecCeeEEEEEeccccccHHHHHHHHHHhcCCChhhhh
Q 010322 68 IGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELC 147 (513)
Q Consensus 68 igi~hk~apv~~RE~~a~~~~~~~~~l~~l~~~~~i~e~viLsTCNR~EiY~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (513)
||+|||+||+++||+|+|+++++++++.+|++.+++.|++|||||||+|||+++++.+.....+.+||+++.+++++++.
T Consensus 1 ig~~hk~a~l~~re~~~~~~~~~~~~l~~l~~~~~i~e~viLsTCNR~Eiy~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (152)
T PF05201_consen 1 IGISHKTAPLEIRERFAFSDEELPEALAELKSFPGIEEAVILSTCNRVEIYVVSDDPEAGIDDVKEFLADFSGVDPDELS 80 (152)
T ss_dssp EEEETTTS-HHHHHHHS---TTHHH---HHHHHTT-SEEEEEEETTEEEEEEES-TT-------HHHHH-------HTT-
T ss_pred CeeccccCCHHHHHHHhCCHHHHHHHHHHHhccCCCceEEEeecCCeEEEEEEeCcchhhHHHHHHHHHhhcccchhhhh
Confidence 79999999999999999999999999999999999999999999999999998876666778899999999999999999
Q ss_pred hHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCcccccccc
Q 010322 148 EHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETN 219 (513)
Q Consensus 148 ~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~ 219 (513)
+++|++.|.||+.|||+|+|||||||+||+||+||||+||..|++.|++|++|+.+|+.|++++|+||++|+
T Consensus 81 ~~~~~~~g~~a~~HLf~VasGLdS~V~GE~qIlgQvk~A~~~A~~~g~~g~~L~~lf~~Ai~~aKrvrteT~ 152 (152)
T PF05201_consen 81 EYLYVYTGDEAVRHLFRVASGLDSMVVGEDQILGQVKRAYEFAREAGTTGPILNRLFQQAIRVAKRVRTETG 152 (152)
T ss_dssp TT-EEEEHHHHHHHHHHHHTTTTSSSTT-HHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHHHHSS
T ss_pred cceEEEcChHHHHHHHHHHhcchhhhcChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999984
|
The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents the N-terminal domain of glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway [, ]. The enzyme requires NADPH as a cofactor.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process, 0055114 oxidation-reduction process; PDB: 1GPJ_A. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-24 Score=192.87 Aligned_cols=134 Identities=38% Similarity=0.617 Sum_probs=113.9
Q ss_pred HHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEE
Q 010322 234 LALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVV 313 (513)
Q Consensus 234 la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVV 313 (513)
+|++.+ +++.+++|+|||+|++|++++.+|...|+++|+++|||.+|++++++.+++..+.+.+++++.+.+..+|+|
T Consensus 2 la~~~~--~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~Div 79 (135)
T PF01488_consen 2 LAKKKF--GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIV 79 (135)
T ss_dssp HHCTHH--STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEE
T ss_pred hhHHhc--CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeE
Confidence 556666 489999999999999999999999999999999999999999999999965445677888888888999999
Q ss_pred EEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEccCCHHHH
Q 010322 314 FTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEV 375 (513)
Q Consensus 314 I~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~iDdl~~v 375 (513)
|+||++++++++.+.+..... ...+++|+++||||+|.+.+++|+++|++||++++
T Consensus 80 I~aT~~~~~~i~~~~~~~~~~------~~~~v~Dla~Pr~i~~~v~~~~~v~~~~~d~l~~v 135 (135)
T PF01488_consen 80 INATPSGMPIITEEMLKKASK------KLRLVIDLAVPRDIDPEVAELPGVRLYDLDDLKEV 135 (135)
T ss_dssp EE-SSTTSTSSTHHHHTTTCH------HCSEEEES-SS-SB-TTCGGSTTECCEEHHHHHH-
T ss_pred EEecCCCCcccCHHHHHHHHh------hhhceeccccCCCCChhhcccCCeEEEEhhhcccC
Confidence 999999999999988865421 11499999999999999999999999999999874
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.9e-19 Score=181.03 Aligned_cols=235 Identities=22% Similarity=0.232 Sum_probs=172.0
Q ss_pred cCCceeeeeeeeccCCCCccc-CcchhhchHHHHHHHhHhcCcc----cchhhHHHHHHHhhC--ccccc---c----cc
Q 010322 154 YNKDATQHLFEVSAGLDSLVL-GEGQILAQVKQVVKVGQGVVGF----GRNISGLFKHAISVG--KRVRT---E----TN 219 (513)
Q Consensus 154 ~G~eav~hlf~V~sGldS~vv-GE~qIlgQvk~A~~~a~~~~~~----g~~L~~lf~~ai~v~--k~Vr~---e----t~ 219 (513)
.|.++-+.++.+.---+-|.- ........+.+|.+.|++.|.- |.+.+-.+.. +.+. .++|. + |.
T Consensus 51 ~g~~~eg~~i~~~~~pe~l~~~~~~~~~~~~~~a~~~a~~~G~~i~~Lg~~tsiv~~~-~~~~~~~~~r~i~ie~~~~Tt 129 (340)
T PRK14982 51 TGQTIEGKYIESCFLPEMLSNRRFKTARRKVLNAMALAQKKGINITALGGFSSIIFEN-FNLLQHKQVRNTTLEWERFTT 129 (340)
T ss_pred CCCEEEEEEEeCCCCHHHHhccChHHHHHHHHHHHHHHHHCCCeEEEcCChHHHhcCC-cccccccccccceeccccccC
Confidence 577788887766532222321 2333446677888999988763 2222222222 1221 23331 1 11
Q ss_pred ccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhCCcceee
Q 010322 220 IAAGAVSVSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVA-KGCTKMVVVNRSEERVAAICEELNGVEIIY 297 (513)
Q Consensus 220 i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~-~G~~~V~v~nRs~~ra~~la~~~g~~~~~~ 297 (513)
=...++++++.+|+++...++ .++.+++|+|+|| |.||+.++++|.. .|+.++++++|+.+++..++.+++.. .+
T Consensus 130 GNs~T~~ll~~~V~la~~~lg-~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~--~i 206 (340)
T PRK14982 130 GNTHTAYVICRQVEQNAPRLG-IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGG--KI 206 (340)
T ss_pred CchhHHHHHHHHHHHhHHHhc-cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccc--cH
Confidence 122356777788999888875 5789999999999 8999999999986 47888999999999999998887521 22
Q ss_pred cccchHHhhcCCCcEEEEcCCCCccC-CChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEc--------
Q 010322 298 KPLSEMLSCAADADVVFTSTASEAPL-FLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYN-------- 368 (513)
Q Consensus 298 ~~~~~~~~~l~~aDVVI~AT~s~~~v-i~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~-------- 368 (513)
.++.+.+.++|+||.+|++++++ ++++.+ .++.+++|+|+||||+|.+.. ||+++|+
T Consensus 207 ---~~l~~~l~~aDiVv~~ts~~~~~~I~~~~l----------~~~~~viDiAvPRDVd~~v~~-~~V~v~~gG~V~~p~ 272 (340)
T PRK14982 207 ---LSLEEALPEADIVVWVASMPKGVEIDPETL----------KKPCLMIDGGYPKNLDTKVQG-PGIHVLKGGIVEHSL 272 (340)
T ss_pred ---HhHHHHHccCCEEEECCcCCcCCcCCHHHh----------CCCeEEEEecCCCCCCcccCC-CCEEEEeCCccccCC
Confidence 24567788999999999999885 777665 245999999999999999988 9999988
Q ss_pred -cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 010322 369 -VD-DLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLET 410 (513)
Q Consensus 369 -iD-dl~~v~~~~~~~R~~~~~~ae~iI~e~~~~f~~w~~~~~~ 410 (513)
+| |++.+++.+...|...+..||.||-. |+.|+..-..
T Consensus 273 ~vd~~l~~~v~~~~~~r~~~Ac~AEtiiL~----leg~~~~fS~ 312 (340)
T PRK14982 273 DIDWKIMEIAEMDNPQRQMFACFAEAMLLE----FEGCHTNFSW 312 (340)
T ss_pred CcCccHHHHHhccchhhHHHHHHHHHHHHH----hcCCccCCCc
Confidence 99 99999999999999999999998876 6666654433
|
|
| >PF00745 GlutR_dimer: Glutamyl-tRNAGlu reductase, dimerisation domain; InterPro: IPR015896 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway [] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-17 Score=142.36 Aligned_cols=100 Identities=37% Similarity=0.650 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHHh
Q 010322 389 EAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLR 468 (513)
Q Consensus 389 ~ae~iI~e~~~~f~~w~~~~~~~p~I~~lr~~~e~i~~~el~~~~~kl~~~~~~~~~~~i~~~~~~~~~k~lh~P~~~lk 468 (513)
.|+.||++++..|..|++.+.+.|+|+.|+++++.+++.|++++++++. +++++++++++++++++|||+|.|+..||
T Consensus 2 ~Ae~II~e~~~~f~~w~~~~~~~p~I~~l~~~~e~i~~~el~~~~~~l~--~~~~~~~~i~~~~~~~~~Kllh~p~~~Lr 79 (101)
T PF00745_consen 2 KAEEIIEEEVDEFMRWLKSRKVDPVIKALREKAEEIRDEELERALKKLD--LDEDDEEVIEKLTRSLVNKLLHPPISNLR 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-S------------TTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999964 78899999999999999999999999999
Q ss_pred hcCCCCCchhhhHHHHHHHHHHhCCC
Q 010322 469 CDGSDSRTLDETLENMHALNRMFGLE 494 (513)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~lf~l~ 494 (513)
+.+.++. ..++++++++||+||
T Consensus 80 ~~a~~~~----~~~~~~~l~~lF~l~ 101 (101)
T PF00745_consen 80 EAAEEGD----GDEYLEALRKLFGLD 101 (101)
T ss_dssp SS-TTTT-----THHHHHHHHHHHH-
T ss_pred HHHhCCC----HHHHHHHHHHHhCCC
Confidence 7654332 257899999999985
|
The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents the helical dimerisation domain of glutamyl-tRNA reductase (1.2.1.70 from EC) []. This enzyme reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway [, ]. The enzyme requires NADPH as a cofactor.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process, 0055114 oxidation-reduction process; PDB: 1GPJ_A. |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=152.53 Aligned_cols=224 Identities=19% Similarity=0.237 Sum_probs=156.3
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCccc------------chhhHHHHHHHhhCc
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFG------------RNISGLFKHAISVGK 212 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g------------~~L~~lf~~ai~v~k 212 (513)
.+++.+|...|.+.++..|.|.. ..++.+....+..+..| +++|.+-..|..++.
T Consensus 23 ~~Hn~~~~~lGl~~~Y~a~~v~~-------------~~l~~~v~~~~~~g~~G~NVTiP~Ke~~~~~lD~l~~~A~~iGA 89 (283)
T COG0169 23 RMHNAAFRALGLDYVYLAFEVPP-------------EDLPEAVSGIRALGFRGLNVTIPFKEAALPLLDELSPRARLIGA 89 (283)
T ss_pred HHHHHHHHHcCCCceEEEeecCH-------------HHHHHHHHHHHhcCCCeeEECCccHHHHHHHHhcCCHHHHHhCC
Confidence 48899999999999999999985 67888888888777765 356777777777776
Q ss_pred --cc-cc--cccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Q 010322 213 --RV-RT--ETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIC 287 (513)
Q Consensus 213 --~V-r~--et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la 287 (513)
.+ +. ....++|++..|+.. .+.+...+ .+..+++|+|+|||+++++++..|+..|+++|+|+|||.+|+++|+
T Consensus 90 VNTl~~~~~g~l~G~NTD~~G~~~-~L~~~~~~-~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La 167 (283)
T COG0169 90 VNTLVREDDGKLRGYNTDGIGFLR-ALKEFGLP-VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELA 167 (283)
T ss_pred ceEEEEccCCEEEEEcCCHHHHHH-HHHhcCCC-cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 23 32 345789999999875 33322211 2456899999999999999999999999999999999999999999
Q ss_pred HHhCCcc--eeecccchHHhhcCCCcEEEEcCCCCccCCChh-hhh-cCCchhhhcCCcEEEEeccCCCCCCcccccccC
Q 010322 288 EELNGVE--IIYKPLSEMLSCAADADVVFTSTASEAPLFLKD-HVQ-DLPPVEAAVGGLRLFIDISVPRNVGSCVADVET 363 (513)
Q Consensus 288 ~~~g~~~--~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~-~l~-~~~~~~~~~~g~~viiDlavPrdidp~v~~l~g 363 (513)
+.++... +......++.. ...+|+||+|||.++.--... .+. .. .....+++|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~-~~~~dliINaTp~Gm~~~~~~~~~~~~~------l~~~~~v~D~--------------- 225 (283)
T COG0169 168 DLFGELGAAVEAAALADLEG-LEEADLLINATPVGMAGPEGDSPVPAEL------LPKGAIVYDV--------------- 225 (283)
T ss_pred HHhhhccccccccccccccc-ccccCEEEECCCCCCCCCCCCCCCcHHh------cCcCCEEEEe---------------
Confidence 9987321 11112222221 126999999999987642100 010 00 0122455554
Q ss_pred eEEEccCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcC
Q 010322 364 ARVYNVDDLKEVVAANKEDRL-RKAMEAQAIITEESKQFAAWRDSLE 409 (513)
Q Consensus 364 v~ly~iDdl~~v~~~~~~~R~-~~~~~ae~iI~e~~~~f~~w~~~~~ 409 (513)
+|++-+.+.+..+. +++ +.+.+.+|++.|.+++|+.|++...
T Consensus 226 --vY~P~~TplL~~A~--~~G~~~idGl~Mlv~Qaa~aF~lwtg~~p 268 (283)
T COG0169 226 --VYNPLETPLLREAR--AQGAKTIDGLGMLVHQAAEAFELWTGVEP 268 (283)
T ss_pred --ccCCCCCHHHHHHH--HcCCeEECcHHHHHHHHHHHHHHHhCCCC
Confidence 45555555543322 222 3577899999999999999998843
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=153.56 Aligned_cols=226 Identities=18% Similarity=0.163 Sum_probs=155.2
Q ss_pred hhhhHHHHhcCCceeeeeeeeccC-CCCcccCcchhhchHHHHHHHhHhcCccc------------chhhHHHHHHHhhC
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAG-LDSLVLGEGQILAQVKQVVKVGQGVVGFG------------RNISGLFKHAISVG 211 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sG-ldS~vvGE~qIlgQvk~A~~~a~~~~~~g------------~~L~~lf~~ai~v~ 211 (513)
.+++.+|...|.++++..|+|... +++ .++..+++..+..++.| +++|.+...|-.++
T Consensus 22 ~ihn~~f~~~gl~~~Y~~~~v~~~~v~~---------~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~~D~~~~~A~~iG 92 (284)
T PRK12549 22 AMHEAEGDAQGLRYVYRLIDLDALGLTA---------DALPELLDAAERMGFAGLNITHPCKQAVIPHLDELSDDARALG 92 (284)
T ss_pred HHHHHHHHHcCCCeEEEEEeeccccCCH---------HHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCCHHHHHhC
Confidence 478899999999999999998521 111 56777777777767666 34566666676666
Q ss_pred c--cc--cccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Q 010322 212 K--RV--RTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIC 287 (513)
Q Consensus 212 k--~V--r~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la 287 (513)
. .+ +.....++|++..|+... + +... .++.+++|+|+|+|++|++++..|...|+++|+|+||+.+|++.++
T Consensus 93 AvNTv~~~~g~l~G~NTD~~G~~~~-l-~~~~--~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la 168 (284)
T PRK12549 93 AVNTVVFRDGRRIGHNTDWSGFAES-F-RRGL--PDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALA 168 (284)
T ss_pred CceEEEecCCEEEEEcCCHHHHHHH-H-Hhhc--cCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 6 23 234457899999998752 2 1221 2567899999999999999999999999999999999999999999
Q ss_pred HHhCCc--ceeecccchHHhhcCCCcEEEEcCCCCccCCChhhh--hcCCchhhhcCCcEEEEeccCCCCCCcccccccC
Q 010322 288 EELNGV--EIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHV--QDLPPVEAAVGGLRLFIDISVPRNVGSCVADVET 363 (513)
Q Consensus 288 ~~~g~~--~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l--~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~g 363 (513)
+.++.. ...+.+++++.+.+.++|+||+||+.+++--....+ ..+ ....+++|+
T Consensus 169 ~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l-------~~~~~v~Di--------------- 226 (284)
T PRK12549 169 DELNARFPAARATAGSDLAAALAAADGLVHATPTGMAKHPGLPLPAELL-------RPGLWVADI--------------- 226 (284)
T ss_pred HHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCCCCCCHHHc-------CCCcEEEEe---------------
Confidence 877421 123344455555678899999999987532100001 001 122455565
Q ss_pred eEEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010322 364 ARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSL 408 (513)
Q Consensus 364 v~ly~iDdl~~v~~~~~~~R~~~~~~ae~iI~e~~~~f~~w~~~~ 408 (513)
+|++...+.+..+ .+.....+.+.+|++.|.+.+|+.|++..
T Consensus 227 --vY~P~~T~ll~~A-~~~G~~~~~G~~ML~~Qa~~~f~~wtg~~ 268 (284)
T PRK12549 227 --VYFPLETELLRAA-RALGCRTLDGGGMAVFQAVDAFELFTGRE 268 (284)
T ss_pred --eeCCCCCHHHHHH-HHCCCeEecCHHHHHHHHHHHHHHhcCCC
Confidence 3444444433222 22122356789999999999999999853
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-15 Score=150.39 Aligned_cols=229 Identities=19% Similarity=0.178 Sum_probs=151.5
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCccc------------chhhHHHHHHHhhCc
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFG------------RNISGLFKHAISVGK 212 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g------------~~L~~lf~~ai~v~k 212 (513)
.+++.+|...|.++.+..|++.. .+++..+++.... ++.| +++|.+...|-.++.
T Consensus 22 ~ihn~~f~~~gl~~~y~~~~~~~------------~~~l~~~~~~~~~-~~~G~nVT~P~K~~~~~~~d~~~~~A~~iGA 88 (282)
T TIGR01809 22 HLHNAGYEILGLPDKTYEFETCS------------AEELKEVLSGFGP-QFGGASVTIPLKFAILRFADEHTDRASLIGS 88 (282)
T ss_pred HHHHHHHHHcCCCcEEEeeecCC------------HHHHHHHHHhcCC-CCcEEEECCCCHHHHHHHhhcCCHHHHHhCc
Confidence 47889999999999999999853 0455666654432 4444 345666666776766
Q ss_pred --cc-c--ccccccCCCchHHHHHHHHHHhh-CCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Q 010322 213 --RV-R--TETNIAAGAVSVSSAAVELALMK-LPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAI 286 (513)
Q Consensus 213 --~V-r--~et~i~~~~~Sva~~Av~la~~~-~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~l 286 (513)
.+ + +....++|++..|+... +.+.. + +++.+++|+|||+|++|++++.+|...|+++|+|+||+.+|++.+
T Consensus 89 VNTv~~~~~g~l~G~NTD~~G~~~~-l~~~~~~--~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~L 165 (282)
T TIGR01809 89 VNTLLRTQNGIWKGDNTDWDGIAGA-LANIGKF--EPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRL 165 (282)
T ss_pred eeEEEEcCCCcEEEecCCHHHHHHH-HHhhCCc--cccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 23 2 33457899999998752 21111 1 246789999999999999999999999999999999999999999
Q ss_pred HHHhCCc-ceeec-ccchHHhhcCCCcEEEEcCCCCccCCChhhhhcCCc--hhhhcCCcEEEEeccCCCCCCccccccc
Q 010322 287 CEELNGV-EIIYK-PLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPP--VEAAVGGLRLFIDISVPRNVGSCVADVE 362 (513)
Q Consensus 287 a~~~g~~-~~~~~-~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~--~~~~~~g~~viiDlavPrdidp~v~~l~ 362 (513)
++.++.. .+... ..+++...+.++|+||+||+.++++ ..+.+..... ...+.....+++|+
T Consensus 166 a~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~-~~~~l~~~~~~~~~~~~~~~~~v~D~-------------- 230 (282)
T TIGR01809 166 VDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADVPA-DYVDLFATVPFLLLKRKSSEGIFLDA-------------- 230 (282)
T ss_pred HHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCCCC-CHHHhhhhhhhhccccCCCCcEEEEE--------------
Confidence 9987531 11111 1234445567899999999999875 3232221000 00000122455554
Q ss_pred CeEEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010322 363 TARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSL 408 (513)
Q Consensus 363 gv~ly~iDdl~~v~~~~~~~R~~~~~~ae~iI~e~~~~f~~w~~~~ 408 (513)
+|++.....+..+ .+.....+.+.+|++.|++.+|+.|++..
T Consensus 231 ---vY~P~~T~ll~~A-~~~G~~~~~Gl~MLv~Qa~~~f~lwtg~~ 272 (282)
T TIGR01809 231 ---AYDPWPTPLVAIV-SAAGWRVISGLQMLLHQGFAQFEQWTGMP 272 (282)
T ss_pred ---eeCCCCCHHHHHH-HHCCCEEECcHHHHHHHHHHHHHHHHCCC
Confidence 3554444333222 22233456789999999999999999864
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-16 Score=158.48 Aligned_cols=235 Identities=16% Similarity=0.240 Sum_probs=172.7
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch---------H-HHHHHHhHhcCcccc-hhhHHHHH--------HHhhCcc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ---------V-KQVVKVGQGVVGFGR-NISGLFKH--------AISVGKR 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ---------v-k~A~~~a~~~~~~g~-~L~~lf~~--------ai~v~k~ 213 (513)
..|||+.+.+.+||.++..+.+|++..+.+ + +..|++|-.+++++. ..+|.|.+ .+++|+.
T Consensus 64 vlGHEssGiV~evG~~Vk~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~ 143 (354)
T KOG0024|consen 64 VLGHESSGIVEEVGDEVKHLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDN 143 (354)
T ss_pred ccccccccchhhhcccccccccCCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeCCCC
Confidence 579999999999999999999999988854 2 357888888887742 33454433 4567888
Q ss_pred ccccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc
Q 010322 214 VRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV 293 (513)
Q Consensus 214 Vr~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~ 293 (513)
|..+.+...+|+|++.||.+++. -..|.+|||+||||+|..+...++..|+.+|.+++-.+.|+ ++|+++|..
T Consensus 144 vs~eeGAl~ePLsV~~HAcr~~~------vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rl-e~Ak~~Ga~ 216 (354)
T KOG0024|consen 144 VSFEEGALIEPLSVGVHACRRAG------VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRL-ELAKKFGAT 216 (354)
T ss_pred CchhhcccccchhhhhhhhhhcC------cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHH-HHHHHhCCe
Confidence 99999999999999999998864 34689999999999999999999999999999999999998 889999863
Q ss_pred ceeecc----cchHHhhc------CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC-CCCc-----c
Q 010322 294 EIIYKP----LSEMLSCA------ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR-NVGS-----C 357 (513)
Q Consensus 294 ~~~~~~----~~~~~~~l------~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr-didp-----~ 357 (513)
.+.... .+++.+.+ ..+|++|+||++...+ ...+.... .+|..+++++.-+. ++.+ .
T Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~--~aai~a~r-----~gGt~vlvg~g~~~~~fpi~~v~~k 289 (354)
T KOG0024|consen 217 VTDPSSHKSSPQELAELVEKALGKKQPDVTFDCSGAEVTI--RAAIKATR-----SGGTVVLVGMGAEEIQFPIIDVALK 289 (354)
T ss_pred EEeeccccccHHHHHHHHHhhccccCCCeEEEccCchHHH--HHHHHHhc-----cCCEEEEeccCCCccccChhhhhhh
Confidence 211111 11222221 2489999999997654 33454432 47888888986433 2221 1
Q ss_pred cccccCeEEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010322 358 VADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRD 406 (513)
Q Consensus 358 v~~l~gv~ly~iDdl~~v~~~~~~~R~~~~~~ae~iI~e~~~~f~~w~~ 406 (513)
-.++.|++.|.-.++..+++...+.+ ...+.+|+.... |++|.+
T Consensus 290 E~~~~g~fry~~~~y~~ai~li~sGk----i~~k~lIT~r~~-~~~~~e 333 (354)
T KOG0024|consen 290 EVDLRGSFRYCNGDYPTAIELVSSGK----IDVKPLITHRYK-FDDADE 333 (354)
T ss_pred eeeeeeeeeeccccHHHHHHHHHcCC----cCchhheecccc-cchHHH
Confidence 23667899998889999888765432 334567776665 555544
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-14 Score=145.26 Aligned_cols=221 Identities=17% Similarity=0.184 Sum_probs=151.8
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCccc------------chhhHHHHHHHhhCc
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFG------------RNISGLFKHAISVGK 212 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g------------~~L~~lf~~ai~v~k 212 (513)
.+++.+|...|.++.+..|+|.+ .++++++...+..++.| ++++.+-..|-.++.
T Consensus 22 ~~hn~~~~~~gl~~~y~~~~v~~-------------~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~iga 88 (278)
T PRK00258 22 LIHNAAFKQLGLDGVYLAILVPP-------------EDLEDAVKGFFALGGRGANVTVPFKEAAFALADELSERARLIGA 88 (278)
T ss_pred HHHHHHHHHcCCCcEEEEEecCH-------------HHHHHHHHHHHhCCCCEEEECcCCHHHHHHHhhcCCHHHHHhCC
Confidence 47889999999999999999975 56777777777766655 345666666666665
Q ss_pred --cc--cccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 010322 213 --RV--RTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE 288 (513)
Q Consensus 213 --~V--r~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~ 288 (513)
.+ +.....+.+++..|+.+.- . ...+ .++.+++|+|+|+|++|++++..|...|+.+|+|+||+.++++++++
T Consensus 89 vNtv~~~~g~l~G~NTD~~G~~~~l-~-~~~~-~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~ 165 (278)
T PRK00258 89 VNTLVLEDGRLIGDNTDGIGFVRAL-E-ERLG-VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAK 165 (278)
T ss_pred ceEEEeeCCEEEEEcccHHHHHHHH-H-hccC-CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 23 2334568899999987632 1 1121 35789999999999999999999999998889999999999999998
Q ss_pred HhCCcc-eeecccchHHhhcCCCcEEEEcCCCCccC-CC--hhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCe
Q 010322 289 ELNGVE-IIYKPLSEMLSCAADADVVFTSTASEAPL-FL--KDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETA 364 (513)
Q Consensus 289 ~~g~~~-~~~~~~~~~~~~l~~aDVVI~AT~s~~~v-i~--~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv 364 (513)
.++... +.+ . .+..+.+.++|+||+||+++++- .. .-....+ ....+++|+.
T Consensus 166 ~~~~~~~~~~-~-~~~~~~~~~~DivInaTp~g~~~~~~~~~~~~~~l-------~~~~~v~Div--------------- 221 (278)
T PRK00258 166 LFGALGKAEL-D-LELQEELADFDLIINATSAGMSGELPLPPLPLSLL-------RPGTIVYDMI--------------- 221 (278)
T ss_pred Hhhhccceee-c-ccchhccccCCEEEECCcCCCCCCCCCCCCCHHHc-------CCCCEEEEee---------------
Confidence 875321 112 1 13345578899999999998742 00 0001111 1235667764
Q ss_pred EEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010322 365 RVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSL 408 (513)
Q Consensus 365 ~ly~iDdl~~v~~~~~~~R~~~~~~ae~iI~e~~~~f~~w~~~~ 408 (513)
|++.....+. ...+.......+.+|++.|...+|+.|.+..
T Consensus 222 --Y~P~~T~ll~-~A~~~G~~~~~G~~Ml~~Qa~~~f~~wtg~~ 262 (278)
T PRK00258 222 --YGPLPTPFLA-WAKAQGARTIDGLGMLVHQAAEAFELWTGVR 262 (278)
T ss_pred --cCCCCCHHHH-HHHHCcCeecCCHHHHHHHHHHHHHHHcCCC
Confidence 3333333222 2222222356778999999999999999864
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-14 Score=145.30 Aligned_cols=226 Identities=15% Similarity=0.136 Sum_probs=151.0
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCccc------------chhhHHHHHHHhhCc
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFG------------RNISGLFKHAISVGK 212 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g------------~~L~~lf~~ai~v~k 212 (513)
.+++.+|...|.+++|..|+|.+ .++..+....+..++.| +++|.+...|-.++.
T Consensus 24 ~ihn~~f~~~gl~~~Y~~~~v~~-------------~~l~~~~~~l~~~~~~G~nVTiP~K~~~~~~~D~l~~~A~~iGA 90 (288)
T PRK12749 24 EMQNKALEKAGLPFTYMAFEVDN-------------DSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGA 90 (288)
T ss_pred HHHHHHHHHcCCCeEEEEEecCH-------------HHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCCHHHHHhCc
Confidence 48899999999999999999976 56777777777666655 345666666777766
Q ss_pred --ccc--ccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHH
Q 010322 213 --RVR--TETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS---EERVAA 285 (513)
Q Consensus 213 --~Vr--~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs---~~ra~~ 285 (513)
.|. +...++.|++..|+... +.. .+ .++.+++|+|+|+|+++++++..|...|+++|+|+||+ .+|++.
T Consensus 91 VNTv~~~~g~l~G~NTD~~Gf~~~-l~~--~~-~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~ 166 (288)
T PRK12749 91 INTIVNDDGYLRGYNTDGTGHIRA-IKE--SG-FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA 166 (288)
T ss_pred eeEEEccCCEEEEEecCHHHHHHH-HHh--cC-CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHH
Confidence 232 33457899999997652 211 11 35788999999999999999999999999999999999 468999
Q ss_pred HHHHhCCc---ceeecccch---HHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccc
Q 010322 286 ICEELNGV---EIIYKPLSE---MLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVA 359 (513)
Q Consensus 286 la~~~g~~---~~~~~~~~~---~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~ 359 (513)
+++.++.. .+.+.++++ +.+.+..+|+||+||+.++.--....+ ..... ......+++|+
T Consensus 167 la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~--~~~~~-~l~~~~~v~D~----------- 232 (288)
T PRK12749 167 FAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESL--VNDIS-LLHPGLLVTEC----------- 232 (288)
T ss_pred HHHHhhhccCceEEEechhhhhhhhhhcccCCEEEECCCCCCCCCCCCCC--CCcHH-HCCCCCEEEEe-----------
Confidence 99887531 122333332 233566899999999987642000000 00000 00112445554
Q ss_pred cccCeEEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010322 360 DVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSL 408 (513)
Q Consensus 360 ~l~gv~ly~iDdl~~v~~~~~~~R~~~~~~ae~iI~e~~~~f~~w~~~~ 408 (513)
+|++...+.+..+ .+.-.+.+.+.+|++.|.+.+|+.|.+..
T Consensus 233 ------vY~P~~T~ll~~A-~~~G~~~~~Gl~ML~~Qa~~~f~lwtg~~ 274 (288)
T PRK12749 233 ------VYNPHMTKLLQQA-QQAGCKTIDGYGMLLWQGAEQFTLWTGKD 274 (288)
T ss_pred ------cCCCccCHHHHHH-HHCCCeEECCHHHHHHHHHHHHHHhcCCC
Confidence 3444444333222 22122356778999999999999999864
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-14 Score=144.73 Aligned_cols=229 Identities=15% Similarity=0.130 Sum_probs=152.4
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCccc------------chhhHHHHHHHhhCc
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFG------------RNISGLFKHAISVGK 212 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g------------~~L~~lf~~ai~v~k 212 (513)
.+++.+|...|.++++..|.|.... +.. .++..+++..+..++.| +++|.+...|-.++.
T Consensus 21 ~ihn~~f~~~gl~~~Y~~~~v~~~~----~~~----~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~lD~l~~~A~~iGA 92 (283)
T PRK14027 21 AMHEAEGLAQGRATVYRRIDTLGSR----ASG----QDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDEVSEQATQLGA 92 (283)
T ss_pred HHHHHHHHHcCCCeEEEEEeccccc----CCH----HHHHHHHHHHHhcCCCEEEECccCHHHHHHHhhhCCHHHHHhCC
Confidence 4889999999999999999976311 111 45667777777766666 456777777777776
Q ss_pred --cc-c--ccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Q 010322 213 --RV-R--TETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIC 287 (513)
Q Consensus 213 --~V-r--~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la 287 (513)
.| + ....++.|++..|+... +. ... .+..+++|+|+|+|+.|++++..|...|+++|+|+||+.+|+++++
T Consensus 93 VNTv~~~~~g~l~G~NTD~~Gf~~~-L~-~~~--~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La 168 (283)
T PRK14027 93 VNTVVIDATGHTTGHNTDVSGFGRG-ME-EGL--PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA 168 (283)
T ss_pred ceEEEECCCCcEEEEcCCHHHHHHH-HH-hcC--cCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence 33 2 34457999999998752 21 211 2467899999999999999999999999999999999999999999
Q ss_pred HHhCCc-c---eeecccchHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccC
Q 010322 288 EELNGV-E---IIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVET 363 (513)
Q Consensus 288 ~~~g~~-~---~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~g 363 (513)
+.+... . +...+..+....+..+|+||+||+.++.--....+.. . ......+++|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~~~~~~~~~~----~-~l~~~~~v~D~--------------- 228 (283)
T PRK14027 169 DVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDV----S-CLTKDHWVGDV--------------- 228 (283)
T ss_pred HHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCCCCCCCCCCH----H-HcCCCcEEEEc---------------
Confidence 876311 0 1112222223345679999999998864210000100 0 00122455554
Q ss_pred eEEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010322 364 ARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSL 408 (513)
Q Consensus 364 v~ly~iDdl~~v~~~~~~~R~~~~~~ae~iI~e~~~~f~~w~~~~ 408 (513)
+|++...+.+..+. +.-.....+.+|++.|.+.+|+.|.+..
T Consensus 229 --vY~P~~T~ll~~A~-~~G~~~~~Gl~MLv~Qa~~~f~lw~G~~ 270 (283)
T PRK14027 229 --VYMPIETELLKAAR-ALGCETLDGTRMAIHQAVDAFRLFTGLE 270 (283)
T ss_pred --ccCCCCCHHHHHHH-HCCCEEEccHHHHHHHHHHHHHHHhCCC
Confidence 34444444433221 1112346778999999999999999864
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-13 Score=138.62 Aligned_cols=225 Identities=13% Similarity=0.130 Sum_probs=151.0
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCccc------------chhhHHHHHHHhhCc
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFG------------RNISGLFKHAISVGK 212 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g------------~~L~~lf~~ai~v~k 212 (513)
.+++.+|...|.++.|..|+|.+ ..+..++...+..++.| +++|.+...|-.++.
T Consensus 26 ~ihn~~f~~~gl~~~Y~~~~v~~-------------~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~ld~~~~~A~~iGa 92 (289)
T PRK12548 26 AMYNYSFQKAGLDYAYLAFDIPV-------------DKVPDAIKAIKTFNMRGANVTMPCKSEAAKYMDELSPAARIIGA 92 (289)
T ss_pred HHHHHHHHHcCCCEEEEEEecCH-------------HHHHHHHHHHHHCCCCEEEECccCHHHHHHHhhcCCHHHHHhCc
Confidence 48899999999999999999976 56777787777766666 356666667777766
Q ss_pred --cc--cccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH---HHHHH
Q 010322 213 --RV--RTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE---ERVAA 285 (513)
Q Consensus 213 --~V--r~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~---~ra~~ 285 (513)
.+ ++...++.+++..|+... + +... .++.+++++|+|+|++|++++..|...|+++|+++||+. +++++
T Consensus 93 vNTi~~~~g~l~G~NTD~~G~~~~-l-~~~~--~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~ 168 (289)
T PRK12548 93 VNTIVNDDGKLTGHITDGLGFVRN-L-REHG--VDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQ 168 (289)
T ss_pred eeEEEeECCEEEEEecCHHHHHHH-H-HhcC--CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHH
Confidence 23 234457899999998752 2 2211 246789999999999999999999999998899999996 78888
Q ss_pred HHHHhCCc----ceeecccc---hHHhhcCCCcEEEEcCCCCccCCChh-hhhcCCchhhhcCCcEEEEeccCCCCCCcc
Q 010322 286 ICEELNGV----EIIYKPLS---EMLSCAADADVVFTSTASEAPLFLKD-HVQDLPPVEAAVGGLRLFIDISVPRNVGSC 357 (513)
Q Consensus 286 la~~~g~~----~~~~~~~~---~~~~~l~~aDVVI~AT~s~~~vi~~~-~l~~~~~~~~~~~g~~viiDlavPrdidp~ 357 (513)
+++++... .....+++ ++.+.+..+|+||+||+.++.--... .+... . ......+++|+.
T Consensus 169 l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~---~-~l~~~~~v~D~v-------- 236 (289)
T PRK12548 169 TAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDT---S-VFRKDLVVADTV-------- 236 (289)
T ss_pred HHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcH---H-hcCCCCEEEEec--------
Confidence 88766321 11112232 33445678899999999886421100 01000 0 001224556653
Q ss_pred cccccCeEEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010322 358 VADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSL 408 (513)
Q Consensus 358 v~~l~gv~ly~iDdl~~v~~~~~~~R~~~~~~ae~iI~e~~~~f~~w~~~~ 408 (513)
|++...+.+..+ .+.-...+.+.+|++.|.+.+|+.|++..
T Consensus 237 ---------Y~P~~T~ll~~A-~~~G~~~~~G~~ML~~Qa~~~f~lwtg~~ 277 (289)
T PRK12548 237 ---------YNPKKTKLLEDA-EAAGCKTVGGLGMLLWQGAEAYKLYTGKD 277 (289)
T ss_pred ---------CCCCCCHHHHHH-HHCCCeeeCcHHHHHHHHHHHHHHhcCCC
Confidence 444443333222 11122356789999999999999999864
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.5e-13 Score=134.90 Aligned_cols=216 Identities=15% Similarity=0.119 Sum_probs=142.6
Q ss_pred hhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCccc------------chhhHHHHHHHhhCc-
Q 010322 146 LCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFG------------RNISGLFKHAISVGK- 212 (513)
Q Consensus 146 ~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g------------~~L~~lf~~ai~v~k- 212 (513)
+++.+|...|.++++..|+ . .++..+++..+..++.| +++|.+...|-.++.
T Consensus 26 ihn~~f~~~gl~~~Y~~~~--~-------------~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~lD~l~~~A~~iGAV 90 (272)
T PRK12550 26 FHNYLYEALGLNFLYKAFT--T-------------TDLTAAIGGVRALGIRGCAVSMPFKEAVIPLVDELDPSAQAIESV 90 (272)
T ss_pred HHHHHHHHcCCCcEEEecC--H-------------hHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhcCCHHHHHhCCe
Confidence 8999999999999999997 2 44666777776666655 356666666776666
Q ss_pred -ccc--ccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 010322 213 -RVR--TETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEE 289 (513)
Q Consensus 213 -~Vr--~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~ 289 (513)
.+. .....++|++..|+.. .+ +. .+ ...+++|+|+|+|+.|++++..|...|+.+|+|+||+.++++.+++.
T Consensus 91 NTi~~~~g~l~G~NTD~~Gf~~-~L-~~-~~--~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~ 165 (272)
T PRK12550 91 NTIVNTDGHLKAYNTDYIAIAK-LL-AS-YQ--VPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAEL 165 (272)
T ss_pred eEEEeeCCEEEEEecCHHHHHH-HH-Hh-cC--CCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 232 3345789999999875 22 11 11 22457899999999999999999999999999999999999999987
Q ss_pred hCCcceeecccchHHhhcCCCcEEEEcCCCCccC-CChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEc
Q 010322 290 LNGVEIIYKPLSEMLSCAADADVVFTSTASEAPL-FLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYN 368 (513)
Q Consensus 290 ~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~v-i~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~ 368 (513)
++. .+. ++. ....+|+||+||+.++.- ..... ..+... ......+++|+ +|+
T Consensus 166 ~~~---~~~--~~~--~~~~~dlvINaTp~Gm~~~~~~~~-~pi~~~--~l~~~~~v~D~-----------------vY~ 218 (272)
T PRK12550 166 YGY---EWR--PDL--GGIEADILVNVTPIGMAGGPEADK-LAFPEA--EIDAASVVFDV-----------------VAL 218 (272)
T ss_pred hCC---cch--hhc--ccccCCEEEECCccccCCCCcccc-CCCCHH--HcCCCCEEEEe-----------------ecC
Confidence 742 111 111 124689999999987531 00000 000000 00112345554 344
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 010322 369 VDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLE 409 (513)
Q Consensus 369 iDdl~~v~~~~~~~R~~~~~~ae~iI~e~~~~f~~w~~~~~ 409 (513)
+.....+..+ .+.-.+.+.+.+|++.|.+.+|+.|.+...
T Consensus 219 P~~T~ll~~A-~~~G~~~i~Gl~MLi~Qa~~~f~lwtg~~~ 258 (272)
T PRK12550 219 PAETPLIRYA-RARGKTVITGAEVIALQAVEQFVLYTGVRP 258 (272)
T ss_pred CccCHHHHHH-HHCcCeEeCCHHHHHHHHHHHHHHHhCCCC
Confidence 4444443322 222223567789999999999999998643
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.9e-13 Score=133.54 Aligned_cols=219 Identities=15% Similarity=0.180 Sum_probs=147.4
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCccc------------chhhHHHHHHHhhCc
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFG------------RNISGLFKHAISVGK 212 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g------------~~L~~lf~~ai~v~k 212 (513)
.+++.+|...|.++.+..|+|.+ .++..+++..+..++.| +++|.+...|-.++.
T Consensus 17 ~~hn~~~~~~g~~~~y~~~~v~~-------------~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~~ga 83 (270)
T TIGR00507 17 LIHNAFFKQLGLEGPYIAFLVPP-------------DDLEDALSGFFALGFKGANVTSPFKEEAFQFLDEIDERAKLAGA 83 (270)
T ss_pred HHHHHHHHHcCCCcEEEEEecCH-------------HHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhhCCHHHHHhCC
Confidence 47889999999999999999976 56777777777666655 345666666666665
Q ss_pred --cc--cccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 010322 213 --RV--RTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE 288 (513)
Q Consensus 213 --~V--r~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~ 288 (513)
.+ +.....+.+++..|+... +.+ .. ....+++++|+|+|++|++++..|...|+ +|+++||+.++++++++
T Consensus 84 vNti~~~~g~l~g~NTD~~G~~~~-l~~-~~--~~~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~la~ 158 (270)
T TIGR00507 84 VNTLKLEDGKLVGYNTDGIGLVSD-LER-LI--PLRPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEELAE 158 (270)
T ss_pred ceEEEeeCCEEEEEcCCHHHHHHH-HHh-cC--CCccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 23 233457889999998763 322 11 24568899999999999999999999997 79999999999999988
Q ss_pred HhCCc-ceeecccchHHhhcCCCcEEEEcCCCCccC-CChhhh--hcCCchhhhcCCcEEEEeccCCCCCCcccccccCe
Q 010322 289 ELNGV-EIIYKPLSEMLSCAADADVVFTSTASEAPL-FLKDHV--QDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETA 364 (513)
Q Consensus 289 ~~g~~-~~~~~~~~~~~~~l~~aDVVI~AT~s~~~v-i~~~~l--~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv 364 (513)
.++.. .....+.++ .....+|+||+||+.++.- +....+ ..+ ....+++|+..
T Consensus 159 ~~~~~~~~~~~~~~~--~~~~~~DivInatp~gm~~~~~~~~~~~~~l-------~~~~~v~D~~y-------------- 215 (270)
T TIGR00507 159 RFQRYGEIQAFSMDE--LPLHRVDLIINATSAGMSGNIDEPPVPAEKL-------KEGMVVYDMVY-------------- 215 (270)
T ss_pred HHhhcCceEEechhh--hcccCccEEEECCCCCCCCCCCCCCCCHHHc-------CCCCEEEEecc--------------
Confidence 76421 112222222 2245799999999997531 110001 111 12257788753
Q ss_pred EEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010322 365 RVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSL 408 (513)
Q Consensus 365 ~ly~iDdl~~v~~~~~~~R~~~~~~ae~iI~e~~~~f~~w~~~~ 408 (513)
++.+.. ..+...+.....+.+.+|++.|...+|+.|.+..
T Consensus 216 ---~p~~T~-ll~~A~~~G~~~vdG~~Ml~~Qa~~~f~~w~g~~ 255 (270)
T TIGR00507 216 ---NPGETP-FLAEAKSLGTKTIDGLGMLVAQAALAFELWTGVE 255 (270)
T ss_pred ---CCCCCH-HHHHHHHCCCeeeCCHHHHHHHHHHHHHHHcCCC
Confidence 111111 1222222122356778999999999999999864
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.6e-13 Score=142.53 Aligned_cols=225 Identities=12% Similarity=0.129 Sum_probs=160.4
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCccc------------chhhHHHHHHHhhCc
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFG------------RNISGLFKHAISVGK 212 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g------------~~L~~lf~~ai~v~k 212 (513)
.+++.+|...|.++.+..|+|.+ +.+..+.+.++..++.| ++++.+...|-.++.
T Consensus 232 ~~hn~~f~~~gl~~~Y~~~~v~~-------------~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~~d~~~~~A~~iGA 298 (477)
T PRK09310 232 LSHNPLFSQLSLNCPYIKLPLTP-------------QELPKFFSTIRDLPFLGLSVTMPLKTAVLDFLDKLDPSVKLCGS 298 (477)
T ss_pred HHHHHHHHHcCCCcEEEEeecCH-------------HHHHHHHHHHHhCCCCEEEECccCHHHHHHHhccCCHHHHHhCc
Confidence 37888999999999999999976 55677777777766655 355666666776666
Q ss_pred --cc--cccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 010322 213 --RV--RTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE 288 (513)
Q Consensus 213 --~V--r~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~ 288 (513)
.| +....+|.|++..|+... +.+ .+ .++.+++++|+|+|++|++++..|...|+ +|+++||+.++++.+++
T Consensus 299 VNTv~~~~g~l~G~NTD~~G~~~~-l~~--~~-~~~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~~~~~~~la~ 373 (477)
T PRK09310 299 CNTLVFRNGKIEGYNTDGEGLFSL-LKQ--KN-IPLNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRTKAHAEALAS 373 (477)
T ss_pred ceEEEeeCCEEEEEecCHHHHHHH-HHh--cC-CCcCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 23 344567999999998752 212 11 35688999999999999999999999998 79999999999988888
Q ss_pred HhCCcceeecccchHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEc
Q 010322 289 ELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYN 368 (513)
Q Consensus 289 ~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~ 368 (513)
.++. ...+++++.+ +.++|+||+||+.+.++ .+.+ . .+++|+.. +
T Consensus 374 ~~~~---~~~~~~~~~~-l~~~DiVInatP~g~~~--~~~l-----------~-~~v~D~~Y-----------------~ 418 (477)
T PRK09310 374 RCQG---KAFPLESLPE-LHRIDIIINCLPPSVTI--PKAF-----------P-PCVVDINT-----------------L 418 (477)
T ss_pred Hhcc---ceechhHhcc-cCCCCEEEEcCCCCCcc--hhHH-----------h-hhEEeccC-----------------C
Confidence 7653 2233444332 56899999999998764 1111 1 26788753 2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 010322 369 VDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAER 423 (513)
Q Consensus 369 iDdl~~v~~~~~~~R~~~~~~ae~iI~e~~~~f~~w~~~~~~~p~I~~lr~~~e~ 423 (513)
+.+... +....+.-...+.+.+|++.|+..+|+.|.+..-...+++-+|....+
T Consensus 419 P~~T~l-l~~A~~~G~~~~~G~~Ml~~Qa~~~f~lw~g~~~~~~~~~~~~~~~~~ 472 (477)
T PRK09310 419 PKHSPY-TQYARSQGSSIIYGYEMFAEQALLQFRLWFPTLLFKHLEKTFRRRVAN 472 (477)
T ss_pred CCCCHH-HHHHHHCcCEEECcHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Confidence 111111 111111112346778999999999999999988777777777766544
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-13 Score=143.36 Aligned_cols=214 Identities=17% Similarity=0.269 Sum_probs=144.3
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCcccc-----hhhHHHHHHHhhCcc----
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVGFGR-----NISGLFKHAISVGKR---- 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~~g~-----~L~~lf~~ai~v~k~---- 213 (513)
..|||+++++.+++ ..+...+|++.+..+. +..|+.|.+.+..|. ..+|.|++++.++..
T Consensus 58 i~GHE~~G~V~evG-~~~~~~~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~ 136 (350)
T COG1063 58 ILGHEFVGEVVEVG-VVRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLA 136 (350)
T ss_pred ccCccceEEEEEec-cccCCCCCCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCee
Confidence 68999999999999 7788999998887532 346777775544432 268999999988851
Q ss_pred -c----cccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 010322 214 -V----RTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE 288 (513)
Q Consensus 214 -V----r~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~ 288 (513)
+ ..+.....+|+++++++..... ....+.+|+|+|+|+||.+++..++..|+.+|++++++++|+ ++|+
T Consensus 137 ~~pd~~~~~~aal~epla~~~~~~a~~~-----~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl-~~A~ 210 (350)
T COG1063 137 KLPDGIDEEAAALTEPLATAYHGHAERA-----AVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERL-ELAK 210 (350)
T ss_pred cCCCCCChhhhhhcChhhhhhhhhhhcc-----CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH-HHHH
Confidence 2 2233456789999966632221 223445999999999999999999999999999999999998 7888
Q ss_pred HhCCcceeecccc-hHH----hhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC--CCCcc-c
Q 010322 289 ELNGVEIIYKPLS-EML----SCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR--NVGSC-V 358 (513)
Q Consensus 289 ~~g~~~~~~~~~~-~~~----~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr--didp~-v 358 (513)
++++.+....+.+ +.. +.. .++|+||+|||++..+ .+.++.+. ++|..+++++.-+. .+++. +
T Consensus 211 ~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~~~--~~ai~~~r-----~gG~v~~vGv~~~~~~~~~~~~~ 283 (350)
T COG1063 211 EAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPPAL--DQALEALR-----PGGTVVVVGVYGGEDIPLPAGLV 283 (350)
T ss_pred HhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHHHH--HHHHHHhc-----CCCEEEEEeccCCccCccCHHHH
Confidence 8544332333322 111 222 3699999999976544 34555443 57889999986433 22221 1
Q ss_pred ----ccccCeEE-EccCCHHHHHHHHH
Q 010322 359 ----ADVETARV-YNVDDLKEVVAANK 380 (513)
Q Consensus 359 ----~~l~gv~l-y~iDdl~~v~~~~~ 380 (513)
.++.|... +...++...++...
T Consensus 284 ~~kel~l~gs~~~~~~~~~~~~~~ll~ 310 (350)
T COG1063 284 VSKELTLRGSLRPSGREDFERALDLLA 310 (350)
T ss_pred HhcccEEEeccCCCCcccHHHHHHHHH
Confidence 13344432 45556666655543
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=122.68 Aligned_cols=96 Identities=19% Similarity=0.280 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHhhCCCCCCCCCeEEEEcccHH-HHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHH
Q 010322 226 SVSSAAVELALMKLPESSHATARMLVIGAGKM-GKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEML 304 (513)
Q Consensus 226 Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~m-G~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~ 304 (513)
.++++++++++..+ +++.|++|+|||+|.| |..++++|...|+ +|++++|+.+ ++.
T Consensus 26 ~~~~a~v~l~~~~~--~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~--------------------~l~ 82 (168)
T cd01080 26 CTPAGILELLKRYG--IDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTK--------------------NLK 82 (168)
T ss_pred ChHHHHHHHHHHcC--CCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCch--------------------hHH
Confidence 48888999988776 5799999999999997 8889999999999 5999999842 334
Q ss_pred hhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCC
Q 010322 305 SCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVG 355 (513)
Q Consensus 305 ~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdid 355 (513)
+.+.++|+||+||++++ +++.++++. ..++||+++|||+|
T Consensus 83 ~~l~~aDiVIsat~~~~-ii~~~~~~~----------~~viIDla~prdvd 122 (168)
T cd01080 83 EHTKQADIVIVAVGKPG-LVKGDMVKP----------GAVVIDVGINRVPD 122 (168)
T ss_pred HHHhhCCEEEEcCCCCc-eecHHHccC----------CeEEEEccCCCccc
Confidence 45678999999999999 888887632 38999999999987
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-12 Score=131.60 Aligned_cols=123 Identities=18% Similarity=0.286 Sum_probs=96.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHH-HcCCCeEEEEeCCHHHHHHHHHHhCCc-ceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 245 ATARMLVIGAGKMGKLVIKHLV-AKGCTKMVVVNRSEERVAAICEELNGV-EIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~-~~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
..++++|||+|.+|+.++..|. ..++++|+|+||+++++++|++++... .+.+.+.+++.+++.++|+||+||++..|
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~p 207 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSETP 207 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCCc
Confidence 5679999999999999999997 478889999999999999999877311 12344567788888999999999999999
Q ss_pred CCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEccCCHHHH
Q 010322 323 LFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEV 375 (513)
Q Consensus 323 vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~iDdl~~v 375 (513)
++..++++.... -..+..|.+.||+++|.+ +.++.+|.+|++..+
T Consensus 208 ~i~~~~l~~g~~------i~~vg~~~p~~rEld~~~--l~~a~~~vvD~~~~~ 252 (326)
T TIGR02992 208 ILHAEWLEPGQH------VTAMGSDAEHKNEIDPAV--IAKADHYVADRLSQT 252 (326)
T ss_pred EecHHHcCCCcE------EEeeCCCCCCceecCHHH--HhccCEEEcCCHHHH
Confidence 998888754211 112333555789999987 567788889998875
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.9e-11 Score=131.58 Aligned_cols=221 Identities=17% Similarity=0.183 Sum_probs=146.1
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCccc------------chhhHHHHHHHhhCc
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFG------------RNISGLFKHAISVGK 212 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g------------~~L~~lf~~ai~v~k 212 (513)
.+++.+|...|.++.+..|+|. .+..+.+..+..++.| ++++.+...|-.++.
T Consensus 269 ~ihn~~f~~~gl~~~Y~~~~v~---------------~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~~~~~A~~iGA 333 (529)
T PLN02520 269 ILHNEAFKSVGFNGVYVHLLVD---------------DLAKFLQTYSSPDFAGFSCTIPHKEDALKCCDEVDPIAKSIGA 333 (529)
T ss_pred HHHHHHHHHCCCCcEEEEeehh---------------hHHHHHHHHhhCCCCEEEECcCCHHHHHHHhccCCHHHHHhCC
Confidence 3788899999999999999872 2445566555555555 345666666776766
Q ss_pred --cc-c---ccccccCCCchHHHHHHHHHHhhC--------CCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeC
Q 010322 213 --RV-R---TETNIAAGAVSVSSAAVELALMKL--------PESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNR 278 (513)
Q Consensus 213 --~V-r---~et~i~~~~~Sva~~Av~la~~~~--------~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR 278 (513)
.+ + ....++.|++..|+... +.+ .+ ...++.+++|+|+|+|++|++++..|...|+ +|+++||
T Consensus 334 VNTvv~~~~~g~l~G~NTD~~G~~~~-l~~-~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR 410 (529)
T PLN02520 334 INTIIRRPSDGKLVGYNTDYIGAISA-IED-GLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR 410 (529)
T ss_pred ceEEEEeCCCCEEEEEcccHHHHHHH-HHh-hhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence 23 2 23457899999998652 211 11 0024678999999999999999999999999 7999999
Q ss_pred CHHHHHHHHHHhCCcceeecccchHHhhc-CCCcEEEEcCCCCccC-CChhhhhcCCchhhhcCCcEEEEeccCCCCCCc
Q 010322 279 SEERVAAICEELNGVEIIYKPLSEMLSCA-ADADVVFTSTASEAPL-FLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGS 356 (513)
Q Consensus 279 s~~ra~~la~~~g~~~~~~~~~~~~~~~l-~~aDVVI~AT~s~~~v-i~~~~l~~~~~~~~~~~g~~viiDlavPrdidp 356 (513)
+.++++.+++.++. ...++++..+.. ..+|+||+||+.++.- .....+.... .....+++|+
T Consensus 411 ~~e~a~~la~~l~~---~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~-----l~~~~~v~D~-------- 474 (529)
T PLN02520 411 TYERAKELADAVGG---QALTLADLENFHPEEGMILANTTSVGMQPNVDETPISKHA-----LKHYSLVFDA-------- 474 (529)
T ss_pred CHHHHHHHHHHhCC---ceeeHhHhhhhccccCeEEEecccCCCCCCCCCCcccHhh-----CCCCCEEEEe--------
Confidence 99999999988753 233444443322 4689999999988642 1111111000 0122455665
Q ss_pred ccccccCeEEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 010322 357 CVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLE 409 (513)
Q Consensus 357 ~v~~l~gv~ly~iDdl~~v~~~~~~~R~~~~~~ae~iI~e~~~~f~~w~~~~~ 409 (513)
+|++.+...+..+. +.-...+.+.+|++.|++.+|+.|++...
T Consensus 475 ---------vY~P~~T~ll~~A~-~~G~~~~~Gl~MLv~Qa~~~f~lwtg~~~ 517 (529)
T PLN02520 475 ---------VYTPKITRLLREAE-ESGAIIVSGTEMFIRQAYEQFERFTGLPA 517 (529)
T ss_pred ---------ccCCCcCHHHHHHH-HCCCeEeCcHHHHHHHHHHHHHHHhCCCC
Confidence 34444444433221 11123467789999999999999998643
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.4e-12 Score=128.91 Aligned_cols=181 Identities=19% Similarity=0.316 Sum_probs=129.8
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchH-----------HHHHHHhHhcCcccchhhHHHHHHHhhCcc----ccc
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQV-----------KQVVKVGQGVVGFGRNISGLFKHAISVGKR----VRT 216 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQv-----------k~A~~~a~~~~~~g~~L~~lf~~ai~v~k~----Vr~ 216 (513)
...|||.++.+.+|+++++++-+|++..++-+ .+-.+.|.+....|...+|.|++++.++.+ ++.
T Consensus 59 ~ipGHEivG~V~~vG~~V~~~k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~ 138 (339)
T COG1064 59 LIPGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPE 138 (339)
T ss_pred ccCCcceEEEEEEecCCCccCCCCCEEEecCccCCCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEECCC
Confidence 46899999999999999999999999988432 234455666667788899999998887753 333
Q ss_pred cccc-cCCCchHH----HHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC
Q 010322 217 ETNI-AAGAVSVS----SAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN 291 (513)
Q Consensus 217 et~i-~~~~~Sva----~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g 291 (513)
.... ...|+.++ |.+++.+ +..+|++|+|+|+|+.|...++++++.|+ +|+.++|++++. ++++++|
T Consensus 139 ~~d~~~aApllCaGiT~y~alk~~------~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~-e~a~~lG 210 (339)
T COG1064 139 GLDLAEAAPLLCAGITTYRALKKA------NVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKL-ELAKKLG 210 (339)
T ss_pred CCChhhhhhhhcCeeeEeeehhhc------CCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHH-HHHHHhC
Confidence 3221 12244333 4444432 23479999999999999999999999996 699999999988 8899998
Q ss_pred Ccceeeccc-chHHhhcC-CCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 292 GVEIIYKPL-SEMLSCAA-DADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 292 ~~~~~~~~~-~~~~~~l~-~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
+. ..+... ++..+.+. .+|+||++++ +..+ ...++.+. ++|+.+++++.
T Consensus 211 Ad-~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~--~~~l~~l~-----~~G~~v~vG~~ 261 (339)
T COG1064 211 AD-HVINSSDSDALEAVKEIADAIIDTVG-PATL--EPSLKALR-----RGGTLVLVGLP 261 (339)
T ss_pred Cc-EEEEcCCchhhHHhHhhCcEEEECCC-hhhH--HHHHHHHh-----cCCEEEEECCC
Confidence 63 222221 22223232 3999999999 6554 34555543 47889999875
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-11 Score=126.52 Aligned_cols=141 Identities=20% Similarity=0.270 Sum_probs=104.5
Q ss_pred CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhCCc-ceeecc
Q 010322 222 AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRSEERVAAICEELNGV-EIIYKP 299 (513)
Q Consensus 222 ~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~-~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~~ 299 (513)
.++.+++..+.... .....++++|||+|.+|+.++..+.. .++++|.++||++++++.+++++... .+.+..
T Consensus 114 ~rT~a~~~~a~~~l------a~~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~ 187 (330)
T PRK08291 114 VRTAAAGAVAARHL------AREDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTV 187 (330)
T ss_pred HHHHHHHHHHHHHh------CCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEE
Confidence 34555666554421 12346899999999999999999885 67889999999999999999876421 134445
Q ss_pred cchHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEccCCHHHHH
Q 010322 300 LSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVV 376 (513)
Q Consensus 300 ~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~iDdl~~v~ 376 (513)
++++.+++.++|+||+||++..|++..++++... +-..+..|++.||+++|.+ ++++.+|.+|++..+.
T Consensus 188 ~~d~~~al~~aDiVi~aT~s~~p~i~~~~l~~g~------~v~~vg~d~~~~rEld~~~--l~~a~~v~vD~~~~~~ 256 (330)
T PRK08291 188 ARDVHEAVAGADIIVTTTPSEEPILKAEWLHPGL------HVTAMGSDAEHKNEIAPAV--FAAADLYVCDRLSQTR 256 (330)
T ss_pred eCCHHHHHccCCEEEEeeCCCCcEecHHHcCCCc------eEEeeCCCCCCcccCCHHH--HhhCCEEEeCCHHHHH
Confidence 6778888899999999999999999877765321 1112333566789999988 5678888899988753
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-11 Score=121.49 Aligned_cols=183 Identities=17% Similarity=0.270 Sum_probs=117.4
Q ss_pred cCCceeeeeeeeccCCC------CcccCcchhhchH----------HHHHHHhHhcCcccc-------hhhHHHHHHHhh
Q 010322 154 YNKDATQHLFEVSAGLD------SLVLGEGQILAQV----------KQVVKVGQGVVGFGR-------NISGLFKHAISV 210 (513)
Q Consensus 154 ~G~eav~hlf~V~sGld------S~vvGE~qIlgQv----------k~A~~~a~~~~~~g~-------~L~~lf~~ai~v 210 (513)
.|||+++.+.+|++++. ++.+|++.+.... .+.++.|......|. ..++.|++++.+
T Consensus 2 ~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~v 81 (280)
T TIGR03366 2 LGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCHL 81 (280)
T ss_pred CCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeEEe
Confidence 59999999999999998 8999998876432 123344544333331 247889998887
Q ss_pred Ccc--c---cccccc-cCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Q 010322 211 GKR--V---RTETNI-AAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVA 284 (513)
Q Consensus 211 ~k~--V---r~et~i-~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~ 284 (513)
+.. + +..... ...++.+++.+.-.+-... ...+|++|+|+|+|++|.++++.++..|+++|++++++++|.
T Consensus 82 ~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~~~--~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~- 158 (280)
T TIGR03366 82 PAGTAIVPVPDDLPDAVAAPAGCATATVMAALEAA--GDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRR- 158 (280)
T ss_pred cCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHHhc--cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-
Confidence 653 1 221111 1123333322211111112 234799999999999999999999999998788889998887
Q ss_pred HHHHHhCCcceeecccch----HHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 285 AICEELNGVEIIYKPLSE----MLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 285 ~la~~~g~~~~~~~~~~~----~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
++++++|.. .+....+ ..+.. .++|+||+|++++..+ ...++.+. ++|..++++.
T Consensus 159 ~~a~~~Ga~--~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~~~--~~~~~~l~-----~~G~iv~~G~ 219 (280)
T TIGR03366 159 ELALSFGAT--ALAEPEVLAERQGGLQNGRGVDVALEFSGATAAV--RACLESLD-----VGGTAVLAGS 219 (280)
T ss_pred HHHHHcCCc--EecCchhhHHHHHHHhCCCCCCEEEECCCChHHH--HHHHHHhc-----CCCEEEEecc
Confidence 778888752 2222222 11111 3699999999987654 34455443 4677777775
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.7e-10 Score=106.71 Aligned_cols=129 Identities=25% Similarity=0.299 Sum_probs=90.7
Q ss_pred CchHHHHHHHHHHhhCC--CCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC---Ccceee
Q 010322 224 AVSVSSAAVELALMKLP--ESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN---GVEIIY 297 (513)
Q Consensus 224 ~~Sva~~Av~la~~~~~--~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g---~~~~~~ 297 (513)
...++++++..+.+.+. +.++.+++++|+|+ |++|+.+++.|...|. +|++++|+.++++.+++.++ +..+..
T Consensus 4 ~~~ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~~~l~~~~~~~~~~ 82 (194)
T cd01078 4 SNTTAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAADSLRARFGEGVGA 82 (194)
T ss_pred cHHHHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhhcCCcEEE
Confidence 34456666666655431 13678999999996 9999999999999986 69999999999988887653 111122
Q ss_pred ---cccchHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccc
Q 010322 298 ---KPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADV 361 (513)
Q Consensus 298 ---~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l 361 (513)
...+++.+.+.++|+||+||+++++.. ....... ....+++|+.+|+++++.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~diVi~at~~g~~~~--~~~~~~~------~~~~vv~D~~~~~~~~~~~~~~ 141 (194)
T cd01078 83 VETSDDAARAAAIKGADVVFAAGAAGVELL--EKLAWAP------KPLAVAADVNAVPPVGIEGIDV 141 (194)
T ss_pred eeCCCHHHHHHHHhcCCEEEECCCCCceec--hhhhccc------CceeEEEEccCCCCCCcccccc
Confidence 223445567889999999999998521 1111111 1237899999999998876543
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-10 Score=122.32 Aligned_cols=125 Identities=18% Similarity=0.294 Sum_probs=92.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-ceeecccchHHhhcCCCcEEEEcCC---C
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-EIIYKPLSEMLSCAADADVVFTSTA---S 319 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~~~~~~~~~l~~aDVVI~AT~---s 319 (513)
+.+.+|+|+|+|.+|+.+++.|...|+ +|+++||++++++.++..++.. .......+++.+.+.++|+||+|++ .
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 567889999999999999999999999 5999999999987777777531 0111223456677889999999984 3
Q ss_pred Ccc-CCChhhhhcCCchhhhcCCcEEEEeccCCC--CC--------CcccccccCeEEEccCCHHHHH
Q 010322 320 EAP-LFLKDHVQDLPPVEAAVGGLRLFIDISVPR--NV--------GSCVADVETARVYNVDDLKEVV 376 (513)
Q Consensus 320 ~~~-vi~~~~l~~~~~~~~~~~g~~viiDlavPr--di--------dp~v~~l~gv~ly~iDdl~~v~ 376 (513)
+.| +++.+.++.+. ...+++|+++.. ++ +..+....|+..|-+++++..+
T Consensus 244 ~~p~lit~~~l~~mk-------~g~vIvDva~d~GG~~e~~~~t~~d~p~~~~~Gv~~~~v~nlP~~~ 304 (370)
T TIGR00518 244 KAPKLVSNSLVAQMK-------PGAVIVDVAIDQGGCVETSRPTTHDQPTYAVHDVVHYCVANMPGAV 304 (370)
T ss_pred CCCcCcCHHHHhcCC-------CCCEEEEEecCCCCCccCCcCCCCCCCEEEECCeEEEEeCCccccc
Confidence 334 57788887653 226899998643 22 2224455789999999998865
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.9e-10 Score=116.88 Aligned_cols=179 Identities=15% Similarity=0.237 Sum_probs=120.9
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCcccc-----hhhHHHHHHHhhCc-----
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVGFGR-----NISGLFKHAISVGK----- 212 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~~g~-----~L~~lf~~ai~v~k----- 212 (513)
..|||+++.+.+| ++..+.+|+..+.... .+-++.|......|. ..++.|++++.++.
T Consensus 62 v~GhE~~G~V~~v--~v~~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ 139 (343)
T PRK09880 62 VLGHEVIGKIVHS--DSSGLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIP 139 (343)
T ss_pred ccCcccEEEEEEe--cCccCCCCCEEEECCCCCCcCChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHHeEE
Confidence 5799999999999 7888999998876321 122344444333332 23678887766654
Q ss_pred ---cccccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 010322 213 ---RVRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEE 289 (513)
Q Consensus 213 ---~Vr~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~ 289 (513)
.+..+......|.+++++++..+ ....|++|+|+|+|++|.++++.++..|+++|+++++++++. +++++
T Consensus 140 ~P~~l~~~~aa~~~~~~~a~~al~~~------~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~-~~a~~ 212 (343)
T PRK09880 140 YPEKADEKVMAFAEPLAVAIHAAHQA------GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSL-SLARE 212 (343)
T ss_pred CCCCCCHHHHHhhcHHHHHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHH-HHHHH
Confidence 22222223356778888876543 234789999999999999999999999998899999999887 67888
Q ss_pred hCCcceeecccc-hHHhh---cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 290 LNGVEIIYKPLS-EMLSC---AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 290 ~g~~~~~~~~~~-~~~~~---l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+|.. ..+...+ +..+. ..++|+||+|+|++..+ ...++.+. ++|..+.++.
T Consensus 213 lGa~-~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~~--~~~~~~l~-----~~G~iv~~G~ 267 (343)
T PRK09880 213 MGAD-KLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSSI--NTCLEVTR-----AKGVMVQVGM 267 (343)
T ss_pred cCCc-EEecCCcccHHHHhccCCCCCEEEECCCCHHHH--HHHHHHhh-----cCCEEEEEcc
Confidence 8853 2222211 22222 12489999999986543 34454442 4677777775
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-09 Score=111.75 Aligned_cols=123 Identities=20% Similarity=0.320 Sum_probs=87.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~-~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
....++|+|||+|.||+.+++.+.. .+..+|+|+||++++++.|++++......+...++..+++.++||||+||+++.
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~~ 201 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLSTE 201 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCCC
Confidence 3467899999999999999987765 688899999999999999999874211123345677778899999999999999
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEeccCC--CCCCcccccccCeEEEccCCHHHHH
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDISVP--RNVGSCVADVETARVYNVDDLKEVV 376 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDlavP--rdidp~v~~l~gv~ly~iDdl~~v~ 376 (513)
|++..++++. +.....++...| +++++.+... ..+| +||+....
T Consensus 202 pvl~~~~l~~--------g~~i~~ig~~~~~~~El~~~~~~~--a~~~-vD~~~~~~ 247 (314)
T PRK06141 202 PLVRGEWLKP--------GTHLDLVGNFTPDMRECDDEAIRR--ASVY-VDTRAGAL 247 (314)
T ss_pred CEecHHHcCC--------CCEEEeeCCCCcccccCCHHHHhc--CcEE-EcCHHHHH
Confidence 9988777642 221223332233 4666665432 2333 78876654
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-09 Score=108.62 Aligned_cols=138 Identities=20% Similarity=0.308 Sum_probs=99.3
Q ss_pred CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc
Q 010322 222 AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS 301 (513)
Q Consensus 222 ~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~ 301 (513)
.++.+++.+++.++.+..+ .++.|++|+|+|+|.||+.+++.|...|+ +|+++||++++...+ ...+. ...+++
T Consensus 128 ~n~~~~Ae~ai~~al~~~~-~~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~-~~~g~---~~~~~~ 201 (287)
T TIGR02853 128 YNSIPTAEGAIMMAIEHTD-FTIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARI-TEMGL---IPFPLN 201 (287)
T ss_pred EccHhHHHHHHHHHHHhcC-CCCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH-HHCCC---eeecHH
Confidence 6888999999887765543 46889999999999999999999999998 699999998876443 33432 334556
Q ss_pred hHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccC-CCCCCcccccccCeEEEccCCHHH
Q 010322 302 EMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISV-PRNVGSCVADVETARVYNVDDLKE 374 (513)
Q Consensus 302 ~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlav-Prdidp~v~~l~gv~ly~iDdl~~ 374 (513)
++.+.+.++|+||+|++.+ +++.+.++.+. ...++||++. |...+.....-.|+..+-..-++.
T Consensus 202 ~l~~~l~~aDiVint~P~~--ii~~~~l~~~k-------~~aliIDlas~Pg~tdf~~Ak~~G~~a~~~~glPg 266 (287)
T TIGR02853 202 KLEEKVAEIDIVINTIPAL--VLTADVLSKLP-------KHAVIIDLASKPGGTDFEYAKKRGIKALLAPGLPG 266 (287)
T ss_pred HHHHHhccCCEEEECCChH--HhCHHHHhcCC-------CCeEEEEeCcCCCCCCHHHHHHCCCEEEEeCCCCc
Confidence 7777889999999999764 55666665542 2489999984 655544443344555553333333
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-09 Score=110.22 Aligned_cols=123 Identities=16% Similarity=0.275 Sum_probs=94.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhCCc-ceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRSEERVAAICEELNGV-EIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~-~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
..++++|||+|.+|+..+..+.. .+.++|.|+||+++++++|++++... .+.+.+.++..+++.++|||++||++..|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~P 195 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDTP 195 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCc
Confidence 56899999999999999998886 58899999999999999999887521 22344557788889999999999999999
Q ss_pred CCChhhhhcCCchhhhcCCcEEEEeccCC--CCCCcccccccCeEEEccCCHHHHHH
Q 010322 323 LFLKDHVQDLPPVEAAVGGLRLFIDISVP--RNVGSCVADVETARVYNVDDLKEVVA 377 (513)
Q Consensus 323 vi~~~~l~~~~~~~~~~~g~~viiDlavP--rdidp~v~~l~gv~ly~iDdl~~v~~ 377 (513)
+|..+++++ |-....|+--.| ++++|++.. .+..+-+|++.++..
T Consensus 196 ~~~~~~l~p--------g~hV~aiGs~~p~~~El~~~~l~--~a~~v~vD~~~~~~~ 242 (301)
T PRK06407 196 IFNRKYLGD--------EYHVNLAGSNYPNRREAEHSVLN--DADIVVTEHMEQSLR 242 (301)
T ss_pred EecHHHcCC--------CceEEecCCCCCCcccCCHHHHH--hCCEEEECCHHHHHH
Confidence 998888753 223445554445 678887643 344455788877644
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.1e-09 Score=108.90 Aligned_cols=122 Identities=19% Similarity=0.282 Sum_probs=90.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~-~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
....++++|||+|.+|+.++.++.. .+.++|.++||++++++.|+++++.....+. .++..+++.++|+||+||++++
T Consensus 122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~-~~~~~~av~~aDiVitaT~s~~ 200 (304)
T PRK07340 122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE-PLDGEAIPEAVDLVVTATTSRT 200 (304)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE-ECCHHHHhhcCCEEEEccCCCC
Confidence 4567899999999999999999975 6888999999999999999998853211222 4567778899999999999999
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEeccCC--CCCCcccccccCeEEEccCCHHHHHH
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDISVP--RNVGSCVADVETARVYNVDDLKEVVA 377 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDlavP--rdidp~v~~l~gv~ly~iDdl~~v~~ 377 (513)
|+|.. +++ +|-....|+...| +++++++.. .+. +-+|++..+..
T Consensus 201 Pl~~~-~~~--------~g~hi~~iGs~~p~~~El~~~~~~--~a~-v~vD~~~~~~~ 246 (304)
T PRK07340 201 PVYPE-AAR--------AGRLVVAVGAFTPDMAELAPRTVR--GSR-LYVDDPAGARH 246 (304)
T ss_pred ceeCc-cCC--------CCCEEEecCCCCCCcccCCHHHHh--hCe-EEEcCHHHHHH
Confidence 99875 442 2333444443344 578877644 344 34688877644
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.6e-09 Score=95.66 Aligned_cols=136 Identities=18% Similarity=0.271 Sum_probs=92.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
++.+++++|+|+|.||..+++.|...|..+|++++|++++++++++.++.... .....+..+.+.++|+||+||+.+..
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dvvi~~~~~~~~ 94 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGI-AIAYLDLEELLAEADLIINTTPVGMK 94 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccc-ceeecchhhccccCCEEEeCcCCCCC
Confidence 46789999999999999999999998766799999999999888888753100 01234455557899999999999764
Q ss_pred CCChhhh--hcCCchhhhcCCcEEEEecc-CCCCCCcccccccCeEEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010322 323 LFLKDHV--QDLPPVEAAVGGLRLFIDIS-VPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESK 399 (513)
Q Consensus 323 vi~~~~l--~~~~~~~~~~~g~~viiDla-vPrdidp~v~~l~gv~ly~iDdl~~v~~~~~~~R~~~~~~ae~iI~e~~~ 399 (513)
-.....+ ..+ ....+++|++ +|.+. .+.+...+.....+....+++.|...
T Consensus 95 ~~~~~~~~~~~~-------~~~~~v~D~~~~~~~~-------------------~l~~~~~~~g~~~v~g~~~~~~q~~~ 148 (155)
T cd01065 95 PGDELPLPPSLL-------KPGGVVYDVVYNPLET-------------------PLLKEARALGAKTIDGLEMLVYQAAE 148 (155)
T ss_pred CCCCCCCCHHHc-------CCCCEEEEcCcCCCCC-------------------HHHHHHHHCCCceeCCHHHHHHHHHH
Confidence 0011011 111 1236888886 33211 12222222223356778999999999
Q ss_pred HHHHHH
Q 010322 400 QFAAWR 405 (513)
Q Consensus 400 ~f~~w~ 405 (513)
+|+.|.
T Consensus 149 ~~~~~~ 154 (155)
T cd01065 149 AFELWT 154 (155)
T ss_pred HHHHhc
Confidence 999996
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.8e-09 Score=110.33 Aligned_cols=123 Identities=16% Similarity=0.250 Sum_probs=89.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHH-HcCCCeEEEEeCCHHHHHHHHHHhCCc-ceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 244 HATARMLVIGAGKMGKLVIKHLV-AKGCTKMVVVNRSEERVAAICEELNGV-EIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~-~~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
...++++|||+|.+|+.++..+. ..++++|.++||++++++++++++... .+.+..+++..+++.++|+||+||++++
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~ 204 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT 204 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC
Confidence 35789999999999999998775 468999999999999999999876311 1233456777788899999999999999
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEeccCC--CCCCcccccccCeEEEccCCHHHHHH
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDISVP--RNVGSCVADVETARVYNVDDLKEVVA 377 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDlavP--rdidp~v~~l~gv~ly~iDdl~~v~~ 377 (513)
|++. ++++. |.....|+--.| +++++.+. ..+..+-+|++.++..
T Consensus 205 p~i~-~~l~~--------G~hV~~iGs~~p~~~E~~~~~~--~~a~~vvvD~~~~~~~ 251 (325)
T PRK08618 205 PVFS-EKLKK--------GVHINAVGSFMPDMQELPSEAI--ARANKVVVESKEAALE 251 (325)
T ss_pred cchH-HhcCC--------CcEEEecCCCCcccccCCHHHH--hhCCEEEECCHHHHHH
Confidence 9988 77743 333444443344 45666442 3444455788877643
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.6e-09 Score=108.12 Aligned_cols=121 Identities=17% Similarity=0.281 Sum_probs=90.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPL 323 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~-~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~v 323 (513)
..++++|||+|.+|+..++.+.. ...++|.|+||+++++++|++.+......+.+.++..+++.++|||++||++..|+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~P~ 206 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSREPL 206 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCCce
Confidence 56899999999999999998876 57889999999999999998776421233444577888899999999999999999
Q ss_pred CChhhhhcCCchhhhcCCcEEEEeccCC--CCCCcccccccCeEEEccCCHHHH
Q 010322 324 FLKDHVQDLPPVEAAVGGLRLFIDISVP--RNVGSCVADVETARVYNVDDLKEV 375 (513)
Q Consensus 324 i~~~~l~~~~~~~~~~~g~~viiDlavP--rdidp~v~~l~gv~ly~iDdl~~v 375 (513)
|..++++. |-....|+...| ++++|++.. .+..+-+|++..+
T Consensus 207 ~~~~~l~~--------G~hi~~iGs~~p~~~Eld~~~l~--~a~~vvvD~~~~~ 250 (315)
T PRK06823 207 LQAEDIQP--------GTHITAVGADSPGKQELDAELVA--RADKILVDSIAQC 250 (315)
T ss_pred eCHHHcCC--------CcEEEecCCCCcccccCCHHHHh--hCCEEEECCHHHH
Confidence 98888753 333444443344 678877643 3333446776664
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-08 Score=103.90 Aligned_cols=140 Identities=21% Similarity=0.302 Sum_probs=100.4
Q ss_pred CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc
Q 010322 222 AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS 301 (513)
Q Consensus 222 ~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~ 301 (513)
.++.+++..|+..+...++ .++.+++|+|||+|.+|+.++..|+..|+ +|++++|++++. ..+..+|. ....++
T Consensus 129 ~ns~~~aegav~~a~~~~~-~~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~-~~~~~~G~---~~~~~~ 202 (296)
T PRK08306 129 LNSIPTAEGAIMMAIEHTP-ITIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHL-ARITEMGL---SPFHLS 202 (296)
T ss_pred hccHhHHHHHHHHHHHhCC-CCCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHcCC---eeecHH
Confidence 4666777667766554443 46789999999999999999999999998 699999998775 44556653 344556
Q ss_pred hHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccC-CCCCCcccccccCeEEEccCCHHHHH
Q 010322 302 EMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISV-PRNVGSCVADVETARVYNVDDLKEVV 376 (513)
Q Consensus 302 ~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlav-Prdidp~v~~l~gv~ly~iDdl~~v~ 376 (513)
++.+.+.++|+||+|++. ++++.+.++.+. ...++||++. |...+.......|+..+-...+...+
T Consensus 203 ~l~~~l~~aDiVI~t~p~--~~i~~~~l~~~~-------~g~vIIDla~~pggtd~~~a~~~Gv~~~~~~~lpg~v 269 (296)
T PRK08306 203 ELAEEVGKIDIIFNTIPA--LVLTKEVLSKMP-------PEALIIDLASKPGGTDFEYAEKRGIKALLAPGLPGKV 269 (296)
T ss_pred HHHHHhCCCCEEEECCCh--hhhhHHHHHcCC-------CCcEEEEEccCCCCcCeeehhhCCeEEEEECCCCccC
Confidence 777888999999999864 456677766553 2379999985 54544333344577766555665433
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-09 Score=112.50 Aligned_cols=185 Identities=19% Similarity=0.256 Sum_probs=118.5
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchHH----------HHHHHhHhcCcc--cc-hhhHHHHHHHhhC-------
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQVK----------QVVKVGQGVVGF--GR-NISGLFKHAISVG------- 211 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk----------~A~~~a~~~~~~--g~-~L~~lf~~ai~v~------- 211 (513)
...|||+++.+.+|+++ +.+.+|+..+..... +-++.|...... |. ..++.|++++.++
T Consensus 59 ~i~G~e~~G~V~~vG~~-~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~~ 137 (355)
T cd08230 59 LVLGHEALGVVEEVGDG-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVKV 137 (355)
T ss_pred eeeccccceEEEEecCC-CCCCCCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEEC
Confidence 35799999999999999 999999998763211 111222221111 11 1356677665544
Q ss_pred -ccccccccccCCCchHHHHHHHHHHhhCC-CCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHH
Q 010322 212 -KRVRTETNIAAGAVSVSSAAVELALMKLP-ESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNR---SEERVAAI 286 (513)
Q Consensus 212 -k~Vr~et~i~~~~~Sva~~Av~la~~~~~-~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR---s~~ra~~l 286 (513)
+.+. +......|.+++++|+..+..... .....|++|+|+|+|++|.++++.++..|+ +|++++| +++|. ++
T Consensus 138 P~~~~-~~a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~-~~ 214 (355)
T cd08230 138 PPSLA-DVGVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKA-DI 214 (355)
T ss_pred CCCCC-cceeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHH-HH
Confidence 3343 444455688887777654332110 013478999999999999999999999999 5999998 56776 67
Q ss_pred HHHhCCcceeeccc-chHH--hhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 287 CEELNGVEIIYKPL-SEML--SCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 287 a~~~g~~~~~~~~~-~~~~--~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
++++|.. . +... ++.. ....++|+||+|++++..+ .+.++.+. ++|..++++..
T Consensus 215 ~~~~Ga~-~-v~~~~~~~~~~~~~~~~d~vid~~g~~~~~--~~~~~~l~-----~~G~~v~~G~~ 271 (355)
T cd08230 215 VEELGAT-Y-VNSSKTPVAEVKLVGEFDLIIEATGVPPLA--FEALPALA-----PNGVVILFGVP 271 (355)
T ss_pred HHHcCCE-E-ecCCccchhhhhhcCCCCEEEECcCCHHHH--HHHHHHcc-----CCcEEEEEecC
Confidence 8888753 1 2211 1211 1235799999999986543 34555443 46777777753
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.9e-09 Score=107.35 Aligned_cols=121 Identities=19% Similarity=0.300 Sum_probs=89.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPL 323 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~-~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~v 323 (513)
..++++|||+|.+|+..+..+.. ...++|.|+||++++++.|++++......+...++..+++.++||||+||++..|+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~P~ 206 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRKPV 206 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCCcE
Confidence 56899999999999999888765 46789999999999999998876421122344567788889999999999999999
Q ss_pred CChhhhhcCCchhhhcCCcEEEEeccCC--CCCCcccccccCeEEEccCCHHHHH
Q 010322 324 FLKDHVQDLPPVEAAVGGLRLFIDISVP--RNVGSCVADVETARVYNVDDLKEVV 376 (513)
Q Consensus 324 i~~~~l~~~~~~~~~~~g~~viiDlavP--rdidp~v~~l~gv~ly~iDdl~~v~ 376 (513)
+..++++. |-....|+...| ++++|.+.. .+.+| +||+.++.
T Consensus 207 ~~~~~l~~--------g~~v~~vGs~~p~~~Eld~~~l~--~a~v~-vD~~~~~~ 250 (325)
T TIGR02371 207 VKADWVSE--------GTHINAIGADAPGKQELDPEILK--NAKIF-VDDLEQAT 250 (325)
T ss_pred ecHHHcCC--------CCEEEecCCCCcccccCCHHHHh--cCcEE-ECCHHHHH
Confidence 98877743 323444443344 678887643 23444 78888754
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.4e-09 Score=102.20 Aligned_cols=117 Identities=21% Similarity=0.307 Sum_probs=85.6
Q ss_pred CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCC--eEEEEeCC----HHHH-------HHHHH
Q 010322 222 AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCT--KMVVVNRS----EERV-------AAICE 288 (513)
Q Consensus 222 ~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~--~V~v~nRs----~~ra-------~~la~ 288 (513)
.++.|++.+++..+.+..+ .++.+++|+|+|+|.+|+.++..|...|++ +|+++||+ .+|. ..+++
T Consensus 2 qgt~~v~lAG~~~al~~~g-~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~ 80 (226)
T cd05311 2 HGTAIVTLAGLLNALKLVG-KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAK 80 (226)
T ss_pred CchHHHHHHHHHHHHHHhC-CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHH
Confidence 4667888888776665553 468999999999999999999999999998 99999999 4553 45666
Q ss_pred HhCCcceeecccchHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 289 ELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 289 ~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
.++.. . .. .++.+.+.++|+||+||+. .+++++.++.+. .+ .+++|++.|.
T Consensus 81 ~~~~~--~-~~-~~l~~~l~~~dvlIgaT~~--G~~~~~~l~~m~------~~-~ivf~lsnP~ 131 (226)
T cd05311 81 ETNPE--K-TG-GTLKEALKGADVFIGVSRP--GVVKKEMIKKMA------KD-PIVFALANPV 131 (226)
T ss_pred HhccC--c-cc-CCHHHHHhcCCEEEeCCCC--CCCCHHHHHhhC------CC-CEEEEeCCCC
Confidence 55321 1 11 2455667889999999993 456677777653 23 4555888774
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.9e-09 Score=111.94 Aligned_cols=183 Identities=13% Similarity=0.138 Sum_probs=122.4
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcC------cccc----hhhHHHHHHHhhC
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVV------GFGR----NISGLFKHAISVG 211 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~------~~g~----~L~~lf~~ai~v~ 211 (513)
...|||+++.+.+|+++++++.+|+.++.... ++.++.|.... .+|. ..++.|++++.++
T Consensus 63 ~i~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~ 142 (393)
T TIGR02819 63 LVLGHEITGEVIEKGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVP 142 (393)
T ss_pred ccccceeEEEEEEEcCccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEec
Confidence 35799999999999999999999999977432 12344444321 1121 1357888887776
Q ss_pred c------cccccc---------cccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEE
Q 010322 212 K------RVRTET---------NIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVV 276 (513)
Q Consensus 212 k------~Vr~et---------~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~ 276 (513)
. +++... .....+.+++++++..+ ....|++|+|.|+|++|.++++.++..|++.|+++
T Consensus 143 ~~~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~~~~------~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~ 216 (393)
T TIGR02819 143 YADFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGAVTA------GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVG 216 (393)
T ss_pred hhhCceEECCCcccccccccceeeeccHHHHHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEe
Confidence 3 122221 11223566777776543 23478999999999999999999999999877777
Q ss_pred eCCHHHHHHHHHHhCCcceeeccc--ch----HHhhc--CCCcEEEEcCCCCc-------------cCCChhhhhcCCch
Q 010322 277 NRSEERVAAICEELNGVEIIYKPL--SE----MLSCA--ADADVVFTSTASEA-------------PLFLKDHVQDLPPV 335 (513)
Q Consensus 277 nRs~~ra~~la~~~g~~~~~~~~~--~~----~~~~l--~~aDVVI~AT~s~~-------------~vi~~~~l~~~~~~ 335 (513)
+++++|. ++++++|.. .+... .+ +.+.. .++|+||+|+|.+. ..+ .+.++.+.
T Consensus 217 d~~~~r~-~~a~~~Ga~--~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~-- 290 (393)
T TIGR02819 217 DLNPARL-AQARSFGCE--TVDLSKDATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVL-NSLMEVTR-- 290 (393)
T ss_pred CCCHHHH-HHHHHcCCe--EEecCCcccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHH-HHHHHHhh--
Confidence 8888777 778888852 22221 12 22222 36899999999873 122 34555443
Q ss_pred hhhcCCcEEEEecc
Q 010322 336 EAAVGGLRLFIDIS 349 (513)
Q Consensus 336 ~~~~~g~~viiDla 349 (513)
++|+.+++++.
T Consensus 291 ---~~G~i~~~G~~ 301 (393)
T TIGR02819 291 ---VGGAIGIPGLY 301 (393)
T ss_pred ---CCCEEEEeeec
Confidence 57888998874
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.6e-09 Score=106.25 Aligned_cols=182 Identities=15% Similarity=0.223 Sum_probs=117.0
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchHH----------HHHHHhHhcCc-ccchhhHHHHHHHhhCcc-------
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQVK----------QVVKVGQGVVG-FGRNISGLFKHAISVGKR------- 213 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk----------~A~~~a~~~~~-~g~~L~~lf~~ai~v~k~------- 213 (513)
...|||+++.+.+++++++.+.+|+..+..... +-.+.|..... .|...++.|++++.++..
T Consensus 56 ~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~P~ 135 (339)
T cd08239 56 VIPGHEPAGVVVAVGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPD 135 (339)
T ss_pred ceeccCceEEEEEECCCCccCCCCCEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEECCC
Confidence 457999999999999999999999998763211 11122222111 233346777776666542
Q ss_pred -cccccccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC
Q 010322 214 -VRTETNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN 291 (513)
Q Consensus 214 -Vr~et~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g 291 (513)
+..+.... ..+.+++++++..+ ....|++|+|+|+|.+|.++++.++..|+++|+++++++++. +++.++|
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~------~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~-~~~~~~g 208 (339)
T cd08239 136 DLSFADGALLLCGIGTAYHALRRV------GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERL-ELAKALG 208 (339)
T ss_pred CCCHHHhhhhcchHHHHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHhC
Confidence 22222211 23555667776443 234699999999999999999999999997799999998887 6677887
Q ss_pred Ccceeecccc----hHHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 292 GVEIIYKPLS----EMLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 292 ~~~~~~~~~~----~~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.. ..+...+ .+.+.. .++|+||+|++++..+ ...+..+. .+|..++++.
T Consensus 209 a~-~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~--~~~~~~l~-----~~G~~v~~g~ 263 (339)
T cd08239 209 AD-FVINSGQDDVQEIRELTSGAGADVAIECSGNTAAR--RLALEAVR-----PWGRLVLVGE 263 (339)
T ss_pred CC-EEEcCCcchHHHHHHHhCCCCCCEEEECCCCHHHH--HHHHHHhh-----cCCEEEEEcC
Confidence 52 2222211 122222 2699999999987543 23344432 3576766664
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.6e-09 Score=108.35 Aligned_cols=179 Identities=12% Similarity=0.134 Sum_probs=112.6
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHH-------HHHHhHhcCcccchhhHHHHHHHhhC--------cccccc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQ-------VVKVGQGVVGFGRNISGLFKHAISVG--------KRVRTE 217 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~-------A~~~a~~~~~~g~~L~~lf~~ai~v~--------k~Vr~e 217 (513)
..|||+++.+.+++. +...+|+..+...... ..+.|......|...++.|++++.++ +.+..+
T Consensus 61 i~GhE~~G~V~~~g~--~~~~vGdrV~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~vP~~l~~~ 138 (341)
T cd08237 61 ALIHEGIGVVVSDPT--GTYKVGTKVVMVPNTPVEKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKLPDNVDPE 138 (341)
T ss_pred eccceeEEEEEeeCC--CccCCCCEEEECCCCCchhcccchhccCCCcceeEecCCCceEEEEEEchHHeEECCCCCChH
Confidence 469999999999765 4788999887643211 11122222222323356666655444 344444
Q ss_pred ccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhCCccee
Q 010322 218 TNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRSEERVAAICEELNGVEII 296 (513)
Q Consensus 218 t~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~-~G~~~V~v~nRs~~ra~~la~~~g~~~~~ 296 (513)
......|.+++++++...... ....|++|+|+|+|++|.++++.++. .|..+|++++++++|. ++++..+. .
T Consensus 139 ~aa~~~~~~~a~~a~~~~~~~---~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~-~~a~~~~~---~ 211 (341)
T cd08237 139 VAAFTELVSVGVHAISRFEQI---AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKL-DLFSFADE---T 211 (341)
T ss_pred HhhhhchHHHHHHHHHHHhhc---CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHH-HHHhhcCc---e
Confidence 444456888888887543221 12468999999999999999998886 6766799999998887 55655542 1
Q ss_pred ecccchHHhhcCCCcEEEEcCCCC---ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 297 YKPLSEMLSCAADADVVFTSTASE---APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 297 ~~~~~~~~~~l~~aDVVI~AT~s~---~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
. ..++..+. .++|+||+|+|.+ ..+ .+.++.+. ++|..+++++.
T Consensus 212 ~-~~~~~~~~-~g~d~viD~~G~~~~~~~~--~~~~~~l~-----~~G~iv~~G~~ 258 (341)
T cd08237 212 Y-LIDDIPED-LAVDHAFECVGGRGSQSAI--NQIIDYIR-----PQGTIGLMGVS 258 (341)
T ss_pred e-ehhhhhhc-cCCcEEEECCCCCccHHHH--HHHHHhCc-----CCcEEEEEeec
Confidence 1 11222222 2689999999953 222 34455443 47878888863
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.3e-08 Score=102.96 Aligned_cols=120 Identities=23% Similarity=0.308 Sum_probs=77.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc--
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA-- 321 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~-~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~-- 321 (513)
..++++|||+|.+|+..+..+.. ++.++|.|++|+++++++|++++....+.+...++.++++.++||||+||++..
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~ 206 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA 206 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC
Confidence 45799999999999999998876 689999999999999999999886422345556788899999999999999999
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEeccCC--CCCCcccccccCeEEEccCCHHHH
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDISVP--RNVGSCVADVETARVYNVDDLKEV 375 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDlavP--rdidp~v~~l~gv~ly~iDdl~~v 375 (513)
|++..++++. |-....|+...| +.+++++.. .+.+|. |+...+
T Consensus 207 P~~~~~~l~~--------g~hi~~iGs~~~~~~El~~~~~~--~a~~~v-d~~~~~ 251 (313)
T PF02423_consen 207 PVFDAEWLKP--------GTHINAIGSYTPGMRELDDELLK--RADIVV-DSEAQA 251 (313)
T ss_dssp ESB-GGGS-T--------T-EEEE-S-SSTTBESB-HHHHH--CSEEEE-SCHHHH
T ss_pred ccccHHHcCC--------CcEEEEecCCCCchhhcCHHHhc--cCCEEE-ccHHHH
Confidence 9999888753 222344443344 356665432 345555 666543
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.6e-08 Score=102.67 Aligned_cols=185 Identities=17% Similarity=0.288 Sum_probs=120.7
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhc------hHHH----HHHHhHh---cCcccchhhH----------------
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILA------QVKQ----VVKVGQG---VVGFGRNISG---------------- 202 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlg------Qvk~----A~~~a~~---~~~~g~~L~~---------------- 202 (513)
...|||+.+.+.+|++|++|+.+|+..|+. |++. .-++|.. .+.-|..+++
T Consensus 57 ~vLGHEgAGiVe~VG~gVt~vkpGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG 136 (366)
T COG1062 57 AVLGHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLG 136 (366)
T ss_pred eecccccccEEEEecCCccccCCCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeec
Confidence 568999999999999999999999999983 4332 1122221 1111111221
Q ss_pred --HHHHHHhhCc----cccccccccC-----CCchHHHH-HHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCC
Q 010322 203 --LFKHAISVGK----RVRTETNIAA-----GAVSVSSA-AVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGC 270 (513)
Q Consensus 203 --lf~~ai~v~k----~Vr~et~i~~-----~~~Sva~~-Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~ 270 (513)
-|.++-.++. +|+.+..... -.+..++- +++-++ ..+|.+|.|+|.|.+|.++++.++..|+
T Consensus 137 ~stFa~y~vv~~~s~vki~~~~p~~~a~llGCgV~TG~Gav~nta~------v~~G~tvaV~GlGgVGlaaI~gA~~agA 210 (366)
T COG1062 137 CSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAK------VEPGDTVAVFGLGGVGLAAIQGAKAAGA 210 (366)
T ss_pred cccchhheeecccceEECCCCCCccceEEEeeeeccChHHhhhccc------CCCCCeEEEEeccHhHHHHHHHHHHcCC
Confidence 3444433332 2222211110 12222332 233332 3479999999999999999999999999
Q ss_pred CeEEEEeCCHHHHHHHHHHhCCcceeecccch--HH----hhcC-CCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcE
Q 010322 271 TKMVVVNRSEERVAAICEELNGVEIIYKPLSE--ML----SCAA-DADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR 343 (513)
Q Consensus 271 ~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~--~~----~~l~-~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~ 343 (513)
.+|+.++.+++|. ++|++||..+ .+++.+. +. +... ++|.+|+|++....+ .+.++... ++|..
T Consensus 211 ~~IiAvD~~~~Kl-~~A~~fGAT~-~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~~~~~--~~al~~~~-----~~G~~ 281 (366)
T COG1062 211 GRIIAVDINPEKL-ELAKKFGATH-FVNPKEVDDVVEAIVELTDGGADYAFECVGNVEVM--RQALEATH-----RGGTS 281 (366)
T ss_pred ceEEEEeCCHHHH-HHHHhcCCce-eecchhhhhHHHHHHHhcCCCCCEEEEccCCHHHH--HHHHHHHh-----cCCeE
Confidence 9999999999998 8999999742 3444322 22 2233 899999999998754 45555432 47889
Q ss_pred EEEeccCC
Q 010322 344 LFIDISVP 351 (513)
Q Consensus 344 viiDlavP 351 (513)
++++++-|
T Consensus 282 v~iGv~~~ 289 (366)
T COG1062 282 VIIGVAGA 289 (366)
T ss_pred EEEecCCC
Confidence 99998754
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.9e-08 Score=103.27 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=89.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc--
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA-- 321 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~-~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~-- 321 (513)
..++++|||+|.+|+..++.+.. +..++|+|+||+++++++|++++....+.+...++..+++.++|||++||++..
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~~ 207 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTNA 207 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCCC
Confidence 46889999999999999987765 578999999999999999998875322334445778888999999999999877
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEeccCC--CCCCcccccccCeEEEccCCHHHH
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDISVP--RNVGSCVADVETARVYNVDDLKEV 375 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDlavP--rdidp~v~~l~gv~ly~iDdl~~v 375 (513)
|+|..++++. |-....|+--.| +++++++.. ...+| +|+...+
T Consensus 208 Pvl~~~~lkp--------G~hV~aIGs~~p~~~Eld~~~l~--~a~v~-vD~~~~~ 252 (346)
T PRK07589 208 TILTDDMVEP--------GMHINAVGGDCPGKTELHPDILR--RARVF-VEYEPQT 252 (346)
T ss_pred ceecHHHcCC--------CcEEEecCCCCCCcccCCHHHHh--cCEEE-ECCHHHH
Confidence 8888887743 333445554344 678887643 34455 4776654
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-08 Score=103.66 Aligned_cols=166 Identities=14% Similarity=0.171 Sum_probs=106.7
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCc--------cccccccccCC
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGK--------RVRTETNIAAG 223 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~Vr~et~i~~~ 223 (513)
...|||+++.+.+++++. .+-+|+..+.... .|.. ...| ..+.|++++.++. .+..+. ....
T Consensus 60 ~i~GhE~~G~V~~vG~~v-~~~vGdrV~~~~~-----~c~~-~~~~--~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~~ 129 (308)
T TIGR01202 60 LVPGYESVGRVVEAGPDT-GFRPGDRVFVPGS-----NCYE-DVRG--LFGGASKRLVTPASRVCRLDPALGPQG-ALLA 129 (308)
T ss_pred ccCcceeEEEEEEecCCC-CCCCCCEEEEeCc-----cccc-cccc--cCCcccceEEcCHHHceeCCCCCCHHH-Hhhh
Confidence 347999999999999998 5899999876311 1211 0001 1355555554433 232222 2234
Q ss_pred CchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchH
Q 010322 224 AVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEM 303 (513)
Q Consensus 224 ~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~ 303 (513)
+.+++++++..+ ...+++|+|+|+|++|.++++.++..|++.|.+++++++|. +.+..+. .+.+ .+
T Consensus 130 ~~~~a~~~~~~~-------~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl-~~a~~~~----~i~~-~~- 195 (308)
T TIGR01202 130 LAATARHAVAGA-------EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRR-DGATGYE----VLDP-EK- 195 (308)
T ss_pred HHHHHHHHHHhc-------ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH-Hhhhhcc----ccCh-hh-
Confidence 556777776432 23578899999999999999999999998788888888776 3444332 1211 11
Q ss_pred HhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 304 LSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 304 ~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..-.++|+||+|+|.+..+ ...++.+. ++|..++++..
T Consensus 196 -~~~~g~Dvvid~~G~~~~~--~~~~~~l~-----~~G~iv~~G~~ 233 (308)
T TIGR01202 196 -DPRRDYRAIYDASGDPSLI--DTLVRRLA-----KGGEIVLAGFY 233 (308)
T ss_pred -ccCCCCCEEEECCCCHHHH--HHHHHhhh-----cCcEEEEEeec
Confidence 1224789999999987543 34455443 46878888763
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-08 Score=106.07 Aligned_cols=181 Identities=16% Similarity=0.228 Sum_probs=119.5
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCcccchhhHHHHHHHhhCc--------cc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVGFGRNISGLFKHAISVGK--------RV 214 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~V 214 (513)
..|||+++.+.+|++++..+.+|++.+.-.. .+-++.|...+..|...++.|++++.++. .+
T Consensus 56 i~G~e~~G~V~~vG~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~ 135 (347)
T PRK10309 56 TLGHEFSGYVEAVGSGVDDLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFALPTDM 135 (347)
T ss_pred ccccceEEEEEEeCCCCCCCCCCCEEEECCCcCCCCCcchhCcCcccCCCcceeccCCCCccceeEEeehHHeEECcCCC
Confidence 4799999999999999999999998876321 12233443333334334567776665554 23
Q ss_pred cccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcc
Q 010322 215 RTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVE 294 (513)
Q Consensus 215 r~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~ 294 (513)
..+......+.+++++++.++ ....|++|+|.|+|++|.++++.++..|++.|+++++++++. ++++++|..
T Consensus 136 s~~~aa~~~~~~~~~~~~~~~------~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~-~~~~~~Ga~- 207 (347)
T PRK10309 136 PIEDGAFIEPITVGLHAFHLA------QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKL-ALAKSLGAM- 207 (347)
T ss_pred CHHHhhhhhHHHHHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHH-HHHHHcCCc-
Confidence 333333334666667765432 234689999999999999999999999998788899999887 466778742
Q ss_pred eeeccc----chHHhhc--CCCc-EEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 295 IIYKPL----SEMLSCA--ADAD-VVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 295 ~~~~~~----~~~~~~l--~~aD-VVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
..+... +.+.+.. .++| +||+|+|.+..+ ...++.+. ++|..++++.
T Consensus 208 ~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G~~~~~--~~~~~~l~-----~~G~iv~~G~ 261 (347)
T PRK10309 208 QTFNSREMSAPQIQSVLRELRFDQLILETAGVPQTV--ELAIEIAG-----PRAQLALVGT 261 (347)
T ss_pred eEecCcccCHHHHHHHhcCCCCCeEEEECCCCHHHH--HHHHHHhh-----cCCEEEEEcc
Confidence 122211 1122222 2567 999999986543 34455443 4777888775
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-08 Score=106.20 Aligned_cols=182 Identities=12% Similarity=0.153 Sum_probs=112.8
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH-----------HHHHHHhHhcCcc-------cchhhHHHHHHHhhCcc-
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV-----------KQVVKVGQGVVGF-------GRNISGLFKHAISVGKR- 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv-----------k~A~~~a~~~~~~-------g~~L~~lf~~ai~v~k~- 213 (513)
..|||+++.+.+|+++++++.+|++.+.... .+.++.|...... |...++.|.+++.++..
T Consensus 69 i~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~ 148 (360)
T PLN02586 69 VPGHEIVGIVTKLGKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHF 148 (360)
T ss_pred cCCcceeEEEEEECCCCCccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHH
Confidence 5799999999999999999999999974211 1223344332211 22236778887766652
Q ss_pred ---cccccccc-CCCchHH----HHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 010322 214 ---VRTETNIA-AGAVSVS----SAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAA 285 (513)
Q Consensus 214 ---Vr~et~i~-~~~~Sva----~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~ 285 (513)
++...... ..+++++ ++++.... ....|++|+|.|+|++|.++++.++..|++ |++++.+.++...
T Consensus 149 ~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~-----~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~-vi~~~~~~~~~~~ 222 (360)
T PLN02586 149 VLRFPDNLPLDAGAPLLCAGITVYSPMKYYG-----MTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISSSSNKEDE 222 (360)
T ss_pred eeeCCCCCCHHHhhhhhcchHHHHHHHHHhc-----ccCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCcchhhh
Confidence 22211110 1123332 33332211 123689999999999999999999999985 7777777666667
Q ss_pred HHHHhCCcceeeccc--chHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 286 ICEELNGVEIIYKPL--SEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 286 la~~~g~~~~~~~~~--~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+++++|.. ..+... +.+.+...++|+||+|++++..+ .+.++.+. ++|..+.++.
T Consensus 223 ~~~~~Ga~-~vi~~~~~~~~~~~~~~~D~vid~~g~~~~~--~~~~~~l~-----~~G~iv~vG~ 279 (360)
T PLN02586 223 AINRLGAD-SFLVSTDPEKMKAAIGTMDYIIDTVSAVHAL--GPLLGLLK-----VNGKLITLGL 279 (360)
T ss_pred HHHhCCCc-EEEcCCCHHHHHhhcCCCCEEEECCCCHHHH--HHHHHHhc-----CCcEEEEeCC
Confidence 77778752 222221 12333344689999999976543 33455443 4677777764
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.2e-08 Score=104.11 Aligned_cols=180 Identities=19% Similarity=0.295 Sum_probs=114.7
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCcccchhhHHHHHHHhhCcc----cccc-
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVGFGRNISGLFKHAISVGKR----VRTE- 217 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~~g~~L~~lf~~ai~v~k~----Vr~e- 217 (513)
..|||+++.+.+|+++++.. +|+..+.... ..-++.|......|...++.|++++.++.. ++..
T Consensus 56 i~GhE~~G~V~~vG~~v~~~-~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~G~~ae~~~v~~~~~~~ip~~~ 134 (349)
T TIGR03201 56 ALGHEISGRVIQAGAGAASW-IGKAVIVPAVIPCGECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLCVVDEAR 134 (349)
T ss_pred eccccceEEEEEeCCCcCCC-CCCEEEECCCCCCCCChhhhCcCcccCCCCCccCcCCCCcccceEEechHHeEECCccc
Confidence 46999999999999999876 9998875321 112334444334444456888888777652 2220
Q ss_pred ---cccc-------CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Q 010322 218 ---TNIA-------AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIC 287 (513)
Q Consensus 218 ---t~i~-------~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la 287 (513)
..++ ..+..+++.++..+ ....|.+|+|+|+|++|.++++.++..|+ +|+++++++++. +++
T Consensus 135 ~~~~~~~~~~~a~~~~~~~ta~~a~~~~------~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~-~~~ 206 (349)
T TIGR03201 135 LAAAGLPLEHVSVVADAVTTPYQAAVQA------GLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKL-EMM 206 (349)
T ss_pred ccccCCCHHHhhhhcchHHHHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHH-HHH
Confidence 0111 12334445554321 23468999999999999999999999999 489999999988 567
Q ss_pred HHhCCcceeecccc----hHHhhc------CCCc----EEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 288 EELNGVEIIYKPLS----EMLSCA------ADAD----VVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 288 ~~~g~~~~~~~~~~----~~~~~l------~~aD----VVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
+++|.. ..+...+ ++.+.+ .++| +||+|++++..+ ...++.+. ++|..++++..
T Consensus 207 ~~~Ga~-~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~--~~~~~~l~-----~~G~iv~~G~~ 274 (349)
T TIGR03201 207 KGFGAD-LTLNPKDKSAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQ--ESALSLLS-----HGGTLVVVGYT 274 (349)
T ss_pred HHhCCc-eEecCccccHHHHHHHHHhhcccCCCCCCcCEEEECCCChHHH--HHHHHHHh-----cCCeEEEECcC
Confidence 788752 2222211 222211 2454 899999987543 33444432 46777777753
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.5e-08 Score=101.97 Aligned_cols=183 Identities=16% Similarity=0.186 Sum_probs=112.8
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch-------H----HHHHHHhHhcCc-------ccchhhHHHHHHHhhCcc-
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ-------V----KQVVKVGQGVVG-------FGRNISGLFKHAISVGKR- 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ-------v----k~A~~~a~~~~~-------~g~~L~~lf~~ai~v~k~- 213 (513)
..|||+++.+.+|+++++.+.+|++.+... + .+-++.|..... .|...++.|++++.++..
T Consensus 63 i~GhE~aG~Vv~vG~~v~~~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~ 142 (375)
T PLN02178 63 IPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRF 142 (375)
T ss_pred ccCceeeEEEEEECCCCCccCCCCEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHH
Confidence 479999999999999999999999987421 1 123344443221 122236778887766652
Q ss_pred ---cccccccc-CCCchH----HHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 010322 214 ---VRTETNIA-AGAVSV----SSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAA 285 (513)
Q Consensus 214 ---Vr~et~i~-~~~~Sv----a~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~ 285 (513)
++...... ..++.+ +++++..... ....|++|+|.|+|++|.++++.++..|++ |++++++.++..+
T Consensus 143 ~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~----~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~-Vi~~~~~~~~~~~ 217 (375)
T PLN02178 143 VLSIPDGLPSDSGAPLLCAGITVYSPMKYYGM----TKESGKRLGVNGLGGLGHIAVKIGKAFGLR-VTVISRSSEKERE 217 (375)
T ss_pred eEECCCCCCHHHcchhhccchHHHHHHHHhCC----CCCCCCEEEEEcccHHHHHHHHHHHHcCCe-EEEEeCChHHhHH
Confidence 22211110 012222 3344322210 113689999999999999999999999995 8888877665457
Q ss_pred HHHHhCCcceeeccc--chHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 286 ICEELNGVEIIYKPL--SEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 286 la~~~g~~~~~~~~~--~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+++++|.. ..+... +.+.+...++|+||+|++.+..+ ...++.+. ++|..+.+++
T Consensus 218 ~a~~lGa~-~~i~~~~~~~v~~~~~~~D~vid~~G~~~~~--~~~~~~l~-----~~G~iv~vG~ 274 (375)
T PLN02178 218 AIDRLGAD-SFLVTTDSQKMKEAVGTMDFIIDTVSAEHAL--LPLFSLLK-----VSGKLVALGL 274 (375)
T ss_pred HHHhCCCc-EEEcCcCHHHHHHhhCCCcEEEECCCcHHHH--HHHHHhhc-----CCCEEEEEcc
Confidence 77778752 222221 12333335789999999876443 34454443 4677777765
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.4e-08 Score=101.25 Aligned_cols=178 Identities=15% Similarity=0.117 Sum_probs=119.1
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchH-----------HHHHHHhHhcCcccchhhHHHHHHHhhCcc----ccc
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQV-----------KQVVKVGQGVVGFGRNISGLFKHAISVGKR----VRT 216 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQv-----------k~A~~~a~~~~~~g~~L~~lf~~ai~v~k~----Vr~ 216 (513)
...|||+++.+.+++++++.+.+|++.+.... ...++.|......|...++.|++++.++.. ++.
T Consensus 58 ~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~ 137 (329)
T TIGR02822 58 VTPGHEVVGEVAGRGADAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRLPT 137 (329)
T ss_pred ccCCcceEEEEEEECCCCcccCCCCEEEEcCccCcCCCChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEECCC
Confidence 35799999999999999999999999974211 123445555444554456778877766652 222
Q ss_pred cccc-----cCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC
Q 010322 217 ETNI-----AAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN 291 (513)
Q Consensus 217 et~i-----~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g 291 (513)
.... ...+..++++++..+ ....|.+|+|.|+|++|.++++.++..|++ |+++.++++|. ++++++|
T Consensus 138 ~~~~~~aa~l~~~~~ta~~~~~~~------~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~-vi~~~~~~~~~-~~a~~~G 209 (329)
T TIGR02822 138 GYDDVELAPLLCAGIIGYRALLRA------SLPPGGRLGLYGFGGSAHLTAQVALAQGAT-VHVMTRGAAAR-RLALALG 209 (329)
T ss_pred CCCHHHhHHHhccchHHHHHHHhc------CCCCCCEEEEEcCCHHHHHHHHHHHHCCCe-EEEEeCChHHH-HHHHHhC
Confidence 2111 112334456665432 234689999999999999999999999995 88899998886 7888898
Q ss_pred CcceeecccchHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 292 GVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 292 ~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.. ..+...+. . -...|+++.+++.+..+ ...++.+. ++|..++++.
T Consensus 210 a~-~vi~~~~~-~--~~~~d~~i~~~~~~~~~--~~~~~~l~-----~~G~~v~~G~ 255 (329)
T TIGR02822 210 AA-SAGGAYDT-P--PEPLDAAILFAPAGGLV--PPALEALD-----RGGVLAVAGI 255 (329)
T ss_pred Cc-eecccccc-C--cccceEEEECCCcHHHH--HHHHHhhC-----CCcEEEEEec
Confidence 53 22221111 1 13689999998887543 34555543 4787888876
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.4e-08 Score=100.23 Aligned_cols=182 Identities=15% Similarity=0.200 Sum_probs=111.8
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCc---ccc--------h----------h
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVG---FGR--------N----------I 200 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~---~g~--------~----------L 200 (513)
...|||+++.+.+|+++++.+.+|++...... .+.++.|..... .|. . -
T Consensus 57 ~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 136 (368)
T TIGR02818 57 VILGHEGAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMG 136 (368)
T ss_pred eeeccccEEEEEEECCCCccCCCCCEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccccCCCccccccc
Confidence 35799999999999999999999998875321 111223322110 000 0 0
Q ss_pred hHHHHHHHhhCcc----cc----cccccc-CCCchHHHHHHH-HHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCC
Q 010322 201 SGLFKHAISVGKR----VR----TETNIA-AGAVSVSSAAVE-LALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGC 270 (513)
Q Consensus 201 ~~lf~~ai~v~k~----Vr----~et~i~-~~~~Sva~~Av~-la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~ 270 (513)
++.|++++.++.. ++ .+.... ..+..++++++. .+ ....|++|+|+|+|++|.++++.++..|+
T Consensus 137 ~G~~aey~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~a~~~~~------~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~ 210 (368)
T TIGR02818 137 CSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTA------KVEEGDTVAVFGLGGIGLSVIQGARMAKA 210 (368)
T ss_pred CccceeeEEechhheEECCCCCCHHHhhhhcchhHHHHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 2467776666542 22 211111 123344555532 22 23468999999999999999999999999
Q ss_pred CeEEEEeCCHHHHHHHHHHhCCcceeeccc---chHH----hhc-CCCcEEEEcCCCCccCCChhhhhcCCchhhhcC-C
Q 010322 271 TKMVVVNRSEERVAAICEELNGVEIIYKPL---SEML----SCA-ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVG-G 341 (513)
Q Consensus 271 ~~V~v~nRs~~ra~~la~~~g~~~~~~~~~---~~~~----~~l-~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~-g 341 (513)
.+|+++++++++. ++++++|.. ..+... .+.. +.. .++|+||+|++.+..+ .+.++.+. ++ |
T Consensus 211 ~~Vi~~~~~~~~~-~~a~~~Ga~-~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~--~~~~~~~~-----~~~G 281 (368)
T TIGR02818 211 SRIIAIDINPAKF-ELAKKLGAT-DCVNPNDYDKPIQEVIVEITDGGVDYSFECIGNVNVM--RAALECCH-----KGWG 281 (368)
T ss_pred CeEEEEcCCHHHH-HHHHHhCCC-eEEcccccchhHHHHHHHHhCCCCCEEEECCCCHHHH--HHHHHHhh-----cCCC
Confidence 7799999999887 677888752 222211 1111 111 2699999999976543 34454432 23 6
Q ss_pred cEEEEec
Q 010322 342 LRLFIDI 348 (513)
Q Consensus 342 ~~viiDl 348 (513)
..+++++
T Consensus 282 ~~v~~g~ 288 (368)
T TIGR02818 282 ESIIIGV 288 (368)
T ss_pred eEEEEec
Confidence 6777775
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=98.65 E-value=6e-08 Score=101.71 Aligned_cols=183 Identities=20% Similarity=0.249 Sum_probs=112.1
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCc---ccchh------------------h
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVG---FGRNI------------------S 201 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~---~g~~L------------------~ 201 (513)
..|||+++.+.+|++++....+|++...... .+.++.|..... .|..+ .
T Consensus 64 i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~ 143 (371)
T cd08281 64 ALGHEAAGVVVEVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGV 143 (371)
T ss_pred cCCccceeEEEEeCCCCCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCcccccccCc
Confidence 4799999999999999999999999875321 112233332211 01100 2
Q ss_pred HHHHHHHhhCcc----ccc----cccccC-CCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCe
Q 010322 202 GLFKHAISVGKR----VRT----ETNIAA-GAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTK 272 (513)
Q Consensus 202 ~lf~~ai~v~k~----Vr~----et~i~~-~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~ 272 (513)
+.|++++.++.. ++. +..... .+..+++.++. ... ....|++|+|.|+|++|.++++.++..|+++
T Consensus 144 G~~aey~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~---~~~--~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~ 218 (371)
T cd08281 144 SAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVV---NTA--GVRPGQSVAVVGLGGVGLSALLGAVAAGASQ 218 (371)
T ss_pred ccceeeEEecccceEECCCCCChHHhhhhcchHHHHHHHHH---hcc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Confidence 567777766542 222 221111 12233333321 111 2346899999999999999999999999977
Q ss_pred EEEEeCCHHHHHHHHHHhCCcceeecccc-hH----Hhhc-CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEE
Q 010322 273 MVVVNRSEERVAAICEELNGVEIIYKPLS-EM----LSCA-ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFI 346 (513)
Q Consensus 273 V~v~nRs~~ra~~la~~~g~~~~~~~~~~-~~----~~~l-~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~vii 346 (513)
|++++++++|. ++++++|.. ..+...+ +. .+.. .++|+||+|++.+..+ ...++.+. ++|..+.+
T Consensus 219 Vi~~~~~~~r~-~~a~~~Ga~-~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~~~~--~~~~~~l~-----~~G~iv~~ 289 (371)
T cd08281 219 VVAVDLNEDKL-ALARELGAT-ATVNAGDPNAVEQVRELTGGGVDYAFEMAGSVPAL--ETAYEITR-----RGGTTVTA 289 (371)
T ss_pred EEEEcCCHHHH-HHHHHcCCc-eEeCCCchhHHHHHHHHhCCCCCEEEECCCChHHH--HHHHHHHh-----cCCEEEEE
Confidence 99999999887 677888752 2222211 21 1111 2689999999876543 33444432 46777777
Q ss_pred ecc
Q 010322 347 DIS 349 (513)
Q Consensus 347 Dla 349 (513)
+..
T Consensus 290 G~~ 292 (371)
T cd08281 290 GLP 292 (371)
T ss_pred ccC
Confidence 753
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.9e-07 Score=95.38 Aligned_cols=120 Identities=18% Similarity=0.292 Sum_probs=86.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhCCc-ceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRSEERVAAICEELNGV-EIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~-~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
..++++|||+|.+|+.++..+.. .+++.|.++||++++++++++++... ...+...++..+.+. +|+|++||++..|
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~P 206 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRKP 206 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCCc
Confidence 46789999999999999998874 58899999999999999998876421 112333456666676 9999999999999
Q ss_pred CCChhhhhcCCchhhhcCCcEEEEeccCC--CCCCcccccccCeEEEccCCHHHHH
Q 010322 323 LFLKDHVQDLPPVEAAVGGLRLFIDISVP--RNVGSCVADVETARVYNVDDLKEVV 376 (513)
Q Consensus 323 vi~~~~l~~~~~~~~~~~g~~viiDlavP--rdidp~v~~l~gv~ly~iDdl~~v~ 376 (513)
+|..++++. |.....|+...| +++++++.. ...+ -+||+..+.
T Consensus 207 ~~~~~~l~~--------g~hV~~iGs~~p~~~El~~~~~~--~a~v-vvD~~~~~~ 251 (326)
T PRK06046 207 VVKAEWIKE--------GTHINAIGADAPGKQELDPEILL--RAKV-VVDDMEQAL 251 (326)
T ss_pred EecHHHcCC--------CCEEEecCCCCCccccCCHHHHh--CCcE-EECCHHHHH
Confidence 998887743 232334443344 577776533 2333 358887754
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.3e-07 Score=96.80 Aligned_cols=143 Identities=19% Similarity=0.267 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhhCCC---------CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceee
Q 010322 227 VSSAAVELALMKLPE---------SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIY 297 (513)
Q Consensus 227 va~~Av~la~~~~~~---------~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~ 297 (513)
-||.||-.|...++. +..++.+|+|+|+|.+|..++..++..|+. |++++++.++. +.++.+|...+.+
T Consensus 136 AGy~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~lGA~-V~v~d~~~~rl-e~a~~lGa~~v~v 213 (511)
T TIGR00561 136 AGYRAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSLGAI-VRAFDTRPEVK-EQVQSMGAEFLEL 213 (511)
T ss_pred HHHHHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHHHH-HHHHHcCCeEEec
Confidence 356666555444421 335678999999999999999999999986 99999999887 5677777521122
Q ss_pred ccc--------------ch--------HHhhcCCCcEEEEcC---CCCcc-CCChhhhhcCCchhhhcCCcEEEEeccCC
Q 010322 298 KPL--------------SE--------MLSCAADADVVFTST---ASEAP-LFLKDHVQDLPPVEAAVGGLRLFIDISVP 351 (513)
Q Consensus 298 ~~~--------------~~--------~~~~l~~aDVVI~AT---~s~~~-vi~~~~l~~~~~~~~~~~g~~viiDlavP 351 (513)
... ++ ..+.+.++|+||+|. +.+.| ++++++++.+. + | -++||++..
T Consensus 214 ~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MK-----p-G-svIVDlA~d 286 (511)
T TIGR00561 214 DFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMK-----A-G-SVIVDLAAE 286 (511)
T ss_pred cccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCC-----C-C-CEEEEeeeC
Confidence 110 01 334467899999999 65555 67888887764 2 3 679999864
Q ss_pred C--CCCcc-----cccccCeEEEccCCHHHHHHH
Q 010322 352 R--NVGSC-----VADVETARVYNVDDLKEVVAA 378 (513)
Q Consensus 352 r--didp~-----v~~l~gv~ly~iDdl~~v~~~ 378 (513)
. |++.. +..-.|+.+|.++++...+..
T Consensus 287 ~GGn~E~t~p~~~~~~~~GV~~~gv~nlPs~~p~ 320 (511)
T TIGR00561 287 QGGNCEYTKPGEVYTTENQVKVIGYTDLPSRLPT 320 (511)
T ss_pred CCCCEEEecCceEEEecCCEEEEeeCCccccCHH
Confidence 3 44322 112247999999999876544
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >COG5322 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.2e-07 Score=88.19 Aligned_cols=187 Identities=20% Similarity=0.203 Sum_probs=120.8
Q ss_pred ccccCCCchHHHHHHHHHHh---hCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHH-----HHHHHH
Q 010322 218 TNIAAGAVSVSSAAVELALM---KLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEER-----VAAICE 288 (513)
Q Consensus 218 t~i~~~~~Sva~~Av~la~~---~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~r-----a~~la~ 288 (513)
+....+..-.+|+|.....+ .++ .+++..+|.|+|+ |.+|..++++|..++.. +.+..|..++ ...+.+
T Consensus 137 ~~~ttgns~Tayaa~r~Vl~~~~~lG-idlsqatvaivGa~G~Ia~~Iar~la~~~~~-~~ll~r~aea~~rq~l~~l~e 214 (351)
T COG5322 137 TRFTTGNSHTAYAACRQVLKHFAQLG-IDLSQATVAIVGATGDIASAIARWLAPKVGV-KELLLRDAEARNRQRLTLLQE 214 (351)
T ss_pred EecccCCccchHHHHHHHHHHHHHhC-cCHHHCeEEEecCCchHHHHHHHHhccccCE-EEEecccHHhhhhhhhhhccc
Confidence 34445555566776654333 334 5788999999999 99999999999998775 6666765443 333333
Q ss_pred HhCCcceeecccchHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEc
Q 010322 289 ELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYN 368 (513)
Q Consensus 289 ~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~ 368 (513)
+++. + .+.+. -.+.....++|..|+..+.+.|.++.+++ +.++||-+.|+|+++.+.+.+|+++++
T Consensus 215 ~~~~-~-~i~s~--d~~~~~e~i~v~vAs~~~g~~I~pq~lkp----------g~~ivD~g~P~dvd~~vk~~~~V~Ii~ 280 (351)
T COG5322 215 ELGR-G-KIMSL--DYALPQEDILVWVASMPKGVEIFPQHLKP----------GCLIVDGGYPKDVDTSVKNVGGVRIIP 280 (351)
T ss_pred ccCC-C-eeeec--cccccccceEEEEeecCCCceechhhccC----------CeEEEcCCcCcccccccccCCCeEEec
Confidence 3332 1 11111 12334567888999999999888877642 389999999999999999888888876
Q ss_pred ------cCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Q 010322 369 ------VDD--LKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERIRV 426 (513)
Q Consensus 369 ------iDd--l~~v~~~~~~~R~~~~~~ae~iI~e~~~~f~~w~~~~~~~p~I~~lr~~~e~i~~ 426 (513)
.-| |.-...-+...|.--+.-||.||-+ |+.|....+..+ +-+-++++.|-+
T Consensus 281 GGlV~~s~~it~gi~~~~~~p~~~l~aClAEtlil~----~eg~~~~fS~Gr--q~~~dk~~~ig~ 340 (351)
T COG5322 281 GGLVEHSLDITWGIMKIVGMPVRQLFACLAETLILE----FEGEHTNFSWGR--QILVDKMEFIGD 340 (351)
T ss_pred CccccCccccchhHHHHcccchhhHHHHHHHHHHHH----hcchhhhccccc--cccHHHHHHHHH
Confidence 112 2222222223455556667777665 788887776665 333355555443
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=99.63 Aligned_cols=181 Identities=17% Similarity=0.208 Sum_probs=113.2
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCccc------------------------c
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVGFG------------------------R 198 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~~g------------------------~ 198 (513)
..|||+++.+.+|++++.++.+|++++.... .+-++.|.+....+ .
T Consensus 68 i~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 147 (381)
T PLN02740 68 ILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHF 147 (381)
T ss_pred cccccceEEEEEeCCCCCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCccccc
Confidence 5799999999999999999999999876321 11223333321100 0
Q ss_pred hhhHHHHHHHhhCcc----cccc----ccc-cCCCchHHHHHH-HHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHc
Q 010322 199 NISGLFKHAISVGKR----VRTE----TNI-AAGAVSVSSAAV-ELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAK 268 (513)
Q Consensus 199 ~L~~lf~~ai~v~k~----Vr~e----t~i-~~~~~Sva~~Av-~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~ 268 (513)
..++.|++++.++.. ++.+ ... ...+...+++++ +.+ ....|++|+|+|+|++|.++++.++..
T Consensus 148 ~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~------~~~~g~~VlV~G~G~vG~~a~q~ak~~ 221 (381)
T PLN02740 148 LNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTA------NVQAGSSVAIFGLGAVGLAVAEGARAR 221 (381)
T ss_pred ccCccceeEEEEehHHeEECCCCCCHHHhhhhcccchhhHHHHHhcc------CCCCCCEEEEECCCHHHHHHHHHHHHC
Confidence 124678777766542 2221 111 112334445443 222 234789999999999999999999999
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhCCcceeecccc---hHHh----hc-CCCcEEEEcCCCCccCCChhhhhcCCchhhhcC
Q 010322 269 GCTKMVVVNRSEERVAAICEELNGVEIIYKPLS---EMLS----CA-ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVG 340 (513)
Q Consensus 269 G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~---~~~~----~l-~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~ 340 (513)
|+.+|++++++++|. ++++++|.. ..+...+ +..+ .. .++|+||+|++.+..+ ...+..+. ++
T Consensus 222 G~~~Vi~~~~~~~r~-~~a~~~Ga~-~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G~~~~~--~~a~~~~~-----~g 292 (381)
T PLN02740 222 GASKIIGVDINPEKF-EKGKEMGIT-DFINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVL--REAFLSTH-----DG 292 (381)
T ss_pred CCCcEEEEcCChHHH-HHHHHcCCc-EEEecccccchHHHHHHHHhCCCCCEEEECCCChHHH--HHHHHhhh-----cC
Confidence 997799999999887 667788752 2222111 1222 11 2699999999987544 34444432 33
Q ss_pred -CcEEEEec
Q 010322 341 -GLRLFIDI 348 (513)
Q Consensus 341 -g~~viiDl 348 (513)
|..++++.
T Consensus 293 ~G~~v~~G~ 301 (381)
T PLN02740 293 WGLTVLLGI 301 (381)
T ss_pred CCEEEEEcc
Confidence 66777765
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-07 Score=99.22 Aligned_cols=182 Identities=13% Similarity=0.177 Sum_probs=110.8
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCc----------------ccc-----hhh
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVG----------------FGR-----NIS 201 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~----------------~g~-----~L~ 201 (513)
..|||+++.+.+|++++..+.+|++.+.... .+.++.|...+. .|. ..+
T Consensus 66 i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 145 (378)
T PLN02827 66 IFGHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAV 145 (378)
T ss_pred eecccceEEEEEcCCCCcccCCCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCccccccccc
Confidence 4699999999999999999999998876431 112233332211 000 012
Q ss_pred HHHHHHHhhCcc----ccccccc-cCCCc----hHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCe
Q 010322 202 GLFKHAISVGKR----VRTETNI-AAGAV----SVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTK 272 (513)
Q Consensus 202 ~lf~~ai~v~k~----Vr~et~i-~~~~~----Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~ 272 (513)
+.|++++.++.. ++..... ...++ ..++.++. ... ....|.+|+|+|+|++|.++++.++..|+..
T Consensus 146 G~~aeyv~v~~~~~~~iP~~l~~~~aa~l~~~~~~a~~~~~---~~~--~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~ 220 (378)
T PLN02827 146 SSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAW---NVA--DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQ 220 (378)
T ss_pred ccceeeEEechhheEECCCCCCHHHhhhhcchhHhhHHHHH---hhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence 567777666542 2211110 01112 22333221 111 2346999999999999999999999999977
Q ss_pred EEEEeCCHHHHHHHHHHhCCcceeecccc---hHHh----hc-CCCcEEEEcCCCCccCCChhhhhcCCchhhhcC-CcE
Q 010322 273 MVVVNRSEERVAAICEELNGVEIIYKPLS---EMLS----CA-ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVG-GLR 343 (513)
Q Consensus 273 V~v~nRs~~ra~~la~~~g~~~~~~~~~~---~~~~----~l-~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~-g~~ 343 (513)
|+++++++++. ++++++|.. ..+...+ +..+ .. .++|+||+|+|.+..+ ...++.+. ++ |..
T Consensus 221 vi~~~~~~~~~-~~a~~lGa~-~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~--~~~l~~l~-----~g~G~i 291 (378)
T PLN02827 221 IIGVDINPEKA-EKAKTFGVT-DFINPNDLSEPIQQVIKRMTGGGADYSFECVGDTGIA--TTALQSCS-----DGWGLT 291 (378)
T ss_pred EEEECCCHHHH-HHHHHcCCc-EEEcccccchHHHHHHHHHhCCCCCEEEECCCChHHH--HHHHHhhc-----cCCCEE
Confidence 88889898887 677888752 2222111 2222 11 2699999999986544 34555443 35 667
Q ss_pred EEEec
Q 010322 344 LFIDI 348 (513)
Q Consensus 344 viiDl 348 (513)
+++++
T Consensus 292 v~~G~ 296 (378)
T PLN02827 292 VTLGV 296 (378)
T ss_pred EEECC
Confidence 77765
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-07 Score=100.65 Aligned_cols=81 Identities=16% Similarity=0.224 Sum_probs=63.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.+.|++|+|+|+|++|+.+++.++..|+ +|+++++++.|+ ..|..+|. ...+. .+.+.++|+||+||+.+.
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~-~~A~~~G~---~~~~~---~e~v~~aDVVI~atG~~~- 269 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICA-LQAAMEGY---EVMTM---EEAVKEGDIFVTTTGNKD- 269 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhH-HHHHhcCC---EEccH---HHHHcCCCEEEECCCCHH-
Confidence 4689999999999999999999999999 599999999887 66777764 22222 355678999999999875
Q ss_pred CCChhhhhcC
Q 010322 323 LFLKDHVQDL 332 (513)
Q Consensus 323 vi~~~~l~~~ 332 (513)
+++.+.+..+
T Consensus 270 ~i~~~~l~~m 279 (413)
T cd00401 270 IITGEHFEQM 279 (413)
T ss_pred HHHHHHHhcC
Confidence 4454456654
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.8e-07 Score=95.05 Aligned_cols=122 Identities=21% Similarity=0.247 Sum_probs=90.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhCCc-ceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRSEERVAAICEELNGV-EIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~-~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
....++|||+|.+++..++++.. .++.+|.|++|+++.+++++..+... ...+.+.++..+++.++|+||+||++..|
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~P 208 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTEP 208 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCCC
Confidence 46789999999999999999987 58899999999999999998776432 11244567788889999999999999999
Q ss_pred CCChhhhhcCCchhhhcCCcEEEEeccCC--CCCCcccccccCeEEEccCCHHHHH
Q 010322 323 LFLKDHVQDLPPVEAAVGGLRLFIDISVP--RNVGSCVADVETARVYNVDDLKEVV 376 (513)
Q Consensus 323 vi~~~~l~~~~~~~~~~~g~~viiDlavP--rdidp~v~~l~gv~ly~iDdl~~v~ 376 (513)
++..+++++. -.+..++---| +.++|++... ...|-+|++.+..
T Consensus 209 il~~~~l~~G--------~hI~aiGad~p~k~Eld~e~l~r--a~~vvvD~~~q~~ 254 (330)
T COG2423 209 VLKAEWLKPG--------THINAIGADAPGKRELDPEVLAR--ADRVVVDSLEQTR 254 (330)
T ss_pred eecHhhcCCC--------cEEEecCCCCcccccCCHHHHHh--cCeEEEcCHHHhh
Confidence 9999988642 22333331123 4677776432 3255678887753
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-06 Score=95.46 Aligned_cols=139 Identities=20% Similarity=0.240 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhhCCC---------CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceee
Q 010322 227 VSSAAVELALMKLPE---------SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIY 297 (513)
Q Consensus 227 va~~Av~la~~~~~~---------~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~ 297 (513)
.||.||-.|...++. +..++.+|+|+|+|++|..++..++..|+ +|+++|+++++. +.++.+|.....+
T Consensus 137 AGy~Av~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rl-e~aeslGA~~v~i 214 (509)
T PRK09424 137 AGYRAVIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVA-EQVESMGAEFLEL 214 (509)
T ss_pred hHHHHHHHHHHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHcCCeEEEe
Confidence 467777666554431 24579999999999999999999999999 699999999988 6788888531222
Q ss_pred cccc--------------h--------HHhhcCCCcEEEEcCCCCc---c-CCChhhhhcCCchhhhcCCcEEEEeccCC
Q 010322 298 KPLS--------------E--------MLSCAADADVVFTSTASEA---P-LFLKDHVQDLPPVEAAVGGLRLFIDISVP 351 (513)
Q Consensus 298 ~~~~--------------~--------~~~~l~~aDVVI~AT~s~~---~-vi~~~~l~~~~~~~~~~~g~~viiDlavP 351 (513)
.+.+ + +.+.+.++|+||+|++.|. | ++++++++.+. +++ +++|++++
T Consensus 215 ~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mk-----pGg--vIVdvg~~ 287 (509)
T PRK09424 215 DFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMK-----PGS--VIVDLAAE 287 (509)
T ss_pred ccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcC-----CCC--EEEEEccC
Confidence 2211 1 0122357999999999854 4 44678887764 344 57777764
Q ss_pred --CCCCcc-----cccccCeEEEccCCHHH
Q 010322 352 --RNVGSC-----VADVETARVYNVDDLKE 374 (513)
Q Consensus 352 --rdidp~-----v~~l~gv~ly~iDdl~~ 374 (513)
.+++.. +....++.+|..+++..
T Consensus 288 ~GG~~e~t~~~~~v~~~~gVti~Gv~n~P~ 317 (509)
T PRK09424 288 NGGNCELTVPGEVVVTDNGVTIIGYTDLPS 317 (509)
T ss_pred CCCCcccccCccceEeECCEEEEEeCCCch
Confidence 232211 11125777887766553
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.4e-07 Score=92.39 Aligned_cols=182 Identities=23% Similarity=0.347 Sum_probs=112.4
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCcccch-hhHHHHHHHhh--------Cc
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVGFGRN-ISGLFKHAISV--------GK 212 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~~g~~-L~~lf~~ai~v--------~k 212 (513)
...|+|+++.+.+|+.++....+|+.....+. ...+..|...+.+|.. .++.|++++.+ ++
T Consensus 66 ~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~ 145 (351)
T cd08233 66 VTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPD 145 (351)
T ss_pred ceecccceEEEEEeCCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEECcC
Confidence 35799999999999999999999998875321 1112222222222210 13445444433 33
Q ss_pred cccccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC
Q 010322 213 RVRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG 292 (513)
Q Consensus 213 ~Vr~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~ 292 (513)
.+..+......+.++++.++..+ ....|.+|+|.|+|.+|.++++.++..|+++|++++++.++. +++.++|.
T Consensus 146 ~~~~~~aa~~~~~~ta~~~l~~~------~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~-~~~~~~ga 218 (351)
T cd08233 146 NVPLEEAALVEPLAVAWHAVRRS------GFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARR-ELAEELGA 218 (351)
T ss_pred CCCHHHhhhccHHHHHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHhCC
Confidence 33333332234666677776432 234689999999999999999999999997799999998887 55666764
Q ss_pred cceeecccc-h----HHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 293 VEIIYKPLS-E----MLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 293 ~~~~~~~~~-~----~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
. ..+...+ + +.+.. .++|+||+|++.+..+ ...++.+. .+|..+.++.
T Consensus 219 ~-~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~~~~~--~~~~~~l~-----~~G~~v~~g~ 273 (351)
T cd08233 219 T-IVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGVQATL--DTAIDALR-----PRGTAVNVAI 273 (351)
T ss_pred C-EEECCCccCHHHHHHHHhCCCCCCEEEECCCCHHHH--HHHHHhcc-----CCCEEEEEcc
Confidence 2 2222111 1 22222 2599999999875443 33444432 3566666654
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.6e-07 Score=95.68 Aligned_cols=181 Identities=15% Similarity=0.234 Sum_probs=109.6
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH------H----HHHHHhHhcCc---ccc------------------hhh
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV------K----QVVKVGQGVVG---FGR------------------NIS 201 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv------k----~A~~~a~~~~~---~g~------------------~L~ 201 (513)
..|||+++.+.+|+++++.+.+|+....... . +-.+.|...+. .|. .-.
T Consensus 59 v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~ 138 (368)
T cd08300 59 ILGHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGT 138 (368)
T ss_pred eeccceeEEEEEeCCCCccCCCCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCccccccccc
Confidence 4799999999999999999999998875311 0 01122221110 000 012
Q ss_pred HHHHHHHhhCcc--------cccccccc-CCCchHHHHHH-HHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCC
Q 010322 202 GLFKHAISVGKR--------VRTETNIA-AGAVSVSSAAV-ELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCT 271 (513)
Q Consensus 202 ~lf~~ai~v~k~--------Vr~et~i~-~~~~Sva~~Av-~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~ 271 (513)
+.|++++.++.. +..+.... ..+..+++.++ +.+ ....|++|+|+|+|++|.++++.++..|+.
T Consensus 139 G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a~~~~~------~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~ 212 (368)
T cd08300 139 STFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTA------KVEPGSTVAVFGLGAVGLAVIQGAKAAGAS 212 (368)
T ss_pred ccceeEEEEchhceEeCCCCCChhhhhhhccchhhhHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence 456666655442 22222111 12334455543 211 234689999999999999999999999997
Q ss_pred eEEEEeCCHHHHHHHHHHhCCcceeecccc---hHHhh----c-CCCcEEEEcCCCCccCCChhhhhcCCchhhhcC-Cc
Q 010322 272 KMVVVNRSEERVAAICEELNGVEIIYKPLS---EMLSC----A-ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVG-GL 342 (513)
Q Consensus 272 ~V~v~nRs~~ra~~la~~~g~~~~~~~~~~---~~~~~----l-~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~-g~ 342 (513)
+|+++++++++. ++++++|.. ..+...+ +..+. . .++|+||+|++++..+ ...++.+. ++ |.
T Consensus 213 ~vi~~~~~~~~~-~~~~~lGa~-~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g~~~~~--~~a~~~l~-----~~~G~ 283 (368)
T cd08300 213 RIIGIDINPDKF-ELAKKFGAT-DCVNPKDHDKPIQQVLVEMTDGGVDYTFECIGNVKVM--RAALEACH-----KGWGT 283 (368)
T ss_pred eEEEEeCCHHHH-HHHHHcCCC-EEEcccccchHHHHHHHHHhCCCCcEEEECCCChHHH--HHHHHhhc-----cCCCe
Confidence 799999999988 567788752 2222211 12221 1 2699999999976443 33454432 23 66
Q ss_pred EEEEec
Q 010322 343 RLFIDI 348 (513)
Q Consensus 343 ~viiDl 348 (513)
.+.++.
T Consensus 284 ~v~~g~ 289 (368)
T cd08300 284 SVIIGV 289 (368)
T ss_pred EEEEcc
Confidence 777765
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=98.52 E-value=4e-07 Score=94.95 Aligned_cols=182 Identities=16% Similarity=0.171 Sum_probs=109.4
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH------HH----HHHHhHhcCcc--------cc-----hhhHHHHHHHh
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV------KQ----VVKVGQGVVGF--------GR-----NISGLFKHAIS 209 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv------k~----A~~~a~~~~~~--------g~-----~L~~lf~~ai~ 209 (513)
..|||+++.+.++++++..+.+|++...... .. .++.|...... |. ..++.|++++.
T Consensus 57 i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~ 136 (358)
T TIGR03451 57 LLGHEAAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTL 136 (358)
T ss_pred ccccceEEEEEEeCCCCcccCCCCEEEEccCCCCCCChHHhCcCcccCcCccccccccccccCcccccccccccccceEE
Confidence 4799999999999999999999999876221 11 11112110000 00 11466777766
Q ss_pred hCcc----cccccc----cc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 210 VGKR----VRTETN----IA-AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 210 v~k~----Vr~et~----i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
++.. ++.... .. ..+...++.++. ... ....|++|+|+|+|++|.++++.++..|+++|+++++++
T Consensus 137 v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~~~---~~~--~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~ 211 (358)
T TIGR03451 137 VHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAV---NTG--GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDD 211 (358)
T ss_pred EehhheEECCCCCChhHhhhhcccchhhHHHHH---hcc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 6542 221111 10 011222232211 111 224689999999999999999999999997799999998
Q ss_pred HHHHHHHHHhCCcceeecccc-hH----Hhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 281 ERVAAICEELNGVEIIYKPLS-EM----LSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 281 ~ra~~la~~~g~~~~~~~~~~-~~----~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+|. ++++++|.. ..+...+ +. .+.. .++|+||+|++.+..+ ...+..+. ++|..++++.
T Consensus 212 ~~~-~~~~~~Ga~-~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~~~~~--~~~~~~~~-----~~G~iv~~G~ 277 (358)
T TIGR03451 212 RKL-EWAREFGAT-HTVNSSGTDPVEAIRALTGGFGADVVIDAVGRPETY--KQAFYARD-----LAGTVVLVGV 277 (358)
T ss_pred HHH-HHHHHcCCc-eEEcCCCcCHHHHHHHHhCCCCCCEEEECCCCHHHH--HHHHHHhc-----cCCEEEEECC
Confidence 887 667788752 2222211 22 2222 2689999999986543 33444432 4677777765
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.6e-07 Score=93.96 Aligned_cols=87 Identities=16% Similarity=0.314 Sum_probs=71.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH-c-CCCeEEEEeCCHHHHHHHHHHhCCc--ce-eecccchHHhhcCCCcEEEEcCCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVA-K-GCTKMVVVNRSEERVAAICEELNGV--EI-IYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~-~-G~~~V~v~nRs~~ra~~la~~~g~~--~~-~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
..++++|||+|.+|+..+..+.. . +.++|.|+||+++++++|++++... .+ .+...++..+++.+||||++||++
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s 233 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSG 233 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCC
Confidence 56899999999999999999887 4 4889999999999999998877421 11 244457788889999999999987
Q ss_pred Cc------cCCChhhhhc
Q 010322 320 EA------PLFLKDHVQD 331 (513)
Q Consensus 320 ~~------~vi~~~~l~~ 331 (513)
.. |+|..++++.
T Consensus 234 ~~~~~s~~Pv~~~~~lkp 251 (379)
T PRK06199 234 ETGDPSTYPYVKREWVKP 251 (379)
T ss_pred CCCCCCcCcEecHHHcCC
Confidence 66 9988888753
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.7e-07 Score=93.60 Aligned_cols=182 Identities=15% Similarity=0.203 Sum_probs=109.7
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCcc--cc------------------hhhH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVGF--GR------------------NISG 202 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~~--g~------------------~L~~ 202 (513)
..|||+++.+.+|+++++.+.+|++.+.... .+..+.|.+.... |. ...+
T Consensus 58 i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g 137 (365)
T cd08277 58 ILGHEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTS 137 (365)
T ss_pred ecccceeEEEEeeCCCCccCCCCCEEEECCCCCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccc
Confidence 4699999999999999999999999876321 1122223221100 00 0135
Q ss_pred HHHHHHhhCcc--------ccccccccC-CCchHHHHHH-HHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCe
Q 010322 203 LFKHAISVGKR--------VRTETNIAA-GAVSVSSAAV-ELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTK 272 (513)
Q Consensus 203 lf~~ai~v~k~--------Vr~et~i~~-~~~Sva~~Av-~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~ 272 (513)
.|.+++.++.. +..+..... .+..++++++ +.+ ....|.+|+|+|+|++|.++++.++..|+.+
T Consensus 138 ~~ae~~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~~~~~~~------~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~ 211 (365)
T cd08277 138 TFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTA------KVEPGSTVAVFGLGAVGLSAIMGAKIAGASR 211 (365)
T ss_pred cceeeEEEchhheEECCCCCCHHHhhHhcchhHHHHHHHHhhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence 66666665542 222221111 1334444442 221 2347899999999999999999999999977
Q ss_pred EEEEeCCHHHHHHHHHHhCCcceeecccc---h----HHhhc-CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEE
Q 010322 273 MVVVNRSEERVAAICEELNGVEIIYKPLS---E----MLSCA-ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRL 344 (513)
Q Consensus 273 V~v~nRs~~ra~~la~~~g~~~~~~~~~~---~----~~~~l-~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~v 344 (513)
|+++++++++. ++++++|... .+...+ + +.+.. .++|+||+|++.+..+ .+.+..+.+ .+|..+
T Consensus 212 Vi~~~~~~~~~-~~~~~~ga~~-~i~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~--~~~~~~l~~----~~G~~v 283 (365)
T cd08277 212 IIGVDINEDKF-EKAKEFGATD-FINPKDSDKPVSEVIREMTGGGVDYSFECTGNADLM--NEALESTKL----GWGVSV 283 (365)
T ss_pred EEEEeCCHHHH-HHHHHcCCCc-EeccccccchHHHHHHHHhCCCCCEEEECCCChHHH--HHHHHhccc----CCCEEE
Confidence 99999998887 5667787421 121111 1 11111 3699999999975443 334444321 136677
Q ss_pred EEec
Q 010322 345 FIDI 348 (513)
Q Consensus 345 iiDl 348 (513)
.++.
T Consensus 284 ~~g~ 287 (365)
T cd08277 284 VVGV 287 (365)
T ss_pred EEcC
Confidence 7765
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-06 Score=88.58 Aligned_cols=95 Identities=22% Similarity=0.338 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcccH-HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHh
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGAGK-MGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLS 305 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGaG~-mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~ 305 (513)
++.+.+++.+. .+ .++.|++|+|||.|. +|+.++..|...|++ |+++++.. .++.+
T Consensus 141 Tp~ai~~ll~~-~~-i~l~Gk~vvVIGrs~~VG~pla~lL~~~gat-Vtv~~s~t--------------------~~l~~ 197 (286)
T PRK14175 141 TPLGIMEILKH-AD-IDLEGKNAVVIGRSHIVGQPVSKLLLQKNAS-VTILHSRS--------------------KDMAS 197 (286)
T ss_pred cHHHHHHHHHH-cC-CCCCCCEEEEECCCchhHHHHHHHHHHCCCe-EEEEeCCc--------------------hhHHH
Confidence 34444566544 22 478999999999988 999999999999985 88888642 12344
Q ss_pred hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCC
Q 010322 306 CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVG 355 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdid 355 (513)
.+..||+||+|+|.++. ++.++++. | .++||+++|++++
T Consensus 198 ~~~~ADIVIsAvg~p~~-i~~~~vk~---------g-avVIDvGi~~~~~ 236 (286)
T PRK14175 198 YLKDADVIVSAVGKPGL-VTKDVVKE---------G-AVIIDVGNTPDEN 236 (286)
T ss_pred HHhhCCEEEECCCCCcc-cCHHHcCC---------C-cEEEEcCCCcCCC
Confidence 56789999999999876 56666532 3 7999999988543
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-06 Score=91.93 Aligned_cols=182 Identities=16% Similarity=0.208 Sum_probs=109.6
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch----HH-------HHHHHhHhcCc-------ccchhhHHHHHHHhhCcc-
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ----VK-------QVVKVGQGVVG-------FGRNISGLFKHAISVGKR- 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ----vk-------~A~~~a~~~~~-------~g~~L~~lf~~ai~v~k~- 213 (513)
..|||+++.+.+++++++.+-+|++.+... +. +.++.|....+ .|...++.|.+++.++..
T Consensus 66 i~G~E~~G~Vv~vG~~v~~~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~ 145 (357)
T PLN02514 66 VPGHEVVGEVVEVGSDVSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKF 145 (357)
T ss_pred cCCceeeEEEEEECCCcccccCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHH
Confidence 479999999999999999999999997422 11 11222222100 011235667776666542
Q ss_pred ---ccc----ccccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 010322 214 ---VRT----ETNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAA 285 (513)
Q Consensus 214 ---Vr~----et~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~ 285 (513)
++. +.... ..+...+++++.. ++ ....|.+|+|+|+|++|.++++.++..|++ ++++.++.++...
T Consensus 146 ~~~iP~~~~~~~aa~l~~~~~ta~~al~~----~~-~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~-vi~~~~~~~~~~~ 219 (357)
T PLN02514 146 VVKIPEGMAPEQAAPLLCAGVTVYSPLSH----FG-LKQSGLRGGILGLGGVGHMGVKIAKAMGHH-VTVISSSDKKREE 219 (357)
T ss_pred eEECCCCCCHHHhhhhhhhHHHHHHHHHH----cc-cCCCCCeEEEEcccHHHHHHHHHHHHCCCe-EEEEeCCHHHHHH
Confidence 221 11111 0111222333321 11 124789999999999999999999999985 7778888877766
Q ss_pred HHHHhCCcceeecccc--hHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 286 ICEELNGVEIIYKPLS--EMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 286 la~~~g~~~~~~~~~~--~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+.+.+|.. ..+...+ .+.+...++|+||+|++.+..+ ...++.+. ++|..+.++.
T Consensus 220 ~~~~~Ga~-~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~--~~~~~~l~-----~~G~iv~~G~ 276 (357)
T PLN02514 220 ALEHLGAD-DYLVSSDAAEMQEAADSLDYIIDTVPVFHPL--EPYLSLLK-----LDGKLILMGV 276 (357)
T ss_pred HHHhcCCc-EEecCCChHHHHHhcCCCcEEEECCCchHHH--HHHHHHhc-----cCCEEEEECC
Confidence 66778752 2222221 2333335789999999876443 34454443 4676777764
|
|
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.1e-07 Score=91.02 Aligned_cols=182 Identities=14% Similarity=0.214 Sum_probs=111.3
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchHHH----------HHHHhHhcCcccchhhHHHHHHHhhCc--------c
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQ----------VVKVGQGVVGFGRNISGLFKHAISVGK--------R 213 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~----------A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~ 213 (513)
...|||+++.+..+++++.+.-+|+..+...+.. -.+.|.+.+..+...++.|++++.++. .
T Consensus 55 ~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 134 (339)
T PRK10083 55 RVIGHEFFGVIDAVGEGVDAARIGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRIPDA 134 (339)
T ss_pred cccccceEEEEEEECCCCccCCCCCEEEEccccCCCCCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEECcCC
Confidence 3579999999999999999899999987543221 112232222212112355666555544 2
Q ss_pred ccccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhCC
Q 010322 214 VRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRSEERVAAICEELNG 292 (513)
Q Consensus 214 Vr~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~-~G~~~V~v~nRs~~ra~~la~~~g~ 292 (513)
+..+......+.++++.++..+ ....|.+|+|+|+|.+|.++++.++. .|+..|+++++++++. +++.++|.
T Consensus 135 ~~~~~a~~~~~~~~a~~~~~~~------~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~-~~~~~~Ga 207 (339)
T PRK10083 135 IADQYAVMVEPFTIAANVTGRT------GPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERL-ALAKESGA 207 (339)
T ss_pred CCHHHHhhhchHHHHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHhCC
Confidence 2222222234555555444332 23468999999999999999999886 5998788899998887 67777875
Q ss_pred cceeecccc-hHHhhc----CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 293 VEIIYKPLS-EMLSCA----ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 293 ~~~~~~~~~-~~~~~l----~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
. ..+...+ +..+.+ .++|+||+|++.+..+ .+.++.+. ++|+.+.++.
T Consensus 208 ~-~~i~~~~~~~~~~~~~~g~~~d~vid~~g~~~~~--~~~~~~l~-----~~G~~v~~g~ 260 (339)
T PRK10083 208 D-WVINNAQEPLGEALEEKGIKPTLIIDAACHPSIL--EEAVTLAS-----PAARIVLMGF 260 (339)
T ss_pred c-EEecCccccHHHHHhcCCCCCCEEEECCCCHHHH--HHHHHHhh-----cCCEEEEEcc
Confidence 2 1222111 222222 1457999999976543 34444432 3566666653
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.1e-07 Score=93.41 Aligned_cols=182 Identities=13% Similarity=0.171 Sum_probs=109.6
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCcc-----------------cc-----hh
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVGF-----------------GR-----NI 200 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~~-----------------g~-----~L 200 (513)
..|||+++.+.++++++.++-+|++.+.... ++.++.|...+.. |. ..
T Consensus 59 i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 138 (369)
T cd08301 59 ILGHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVG 138 (369)
T ss_pred ccccccceEEEEeCCCCCccccCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeec
Confidence 4799999999999999999999999986311 1123333332110 00 01
Q ss_pred hHHHHHHHhhCcc----ccc----ccccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCC
Q 010322 201 SGLFKHAISVGKR----VRT----ETNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCT 271 (513)
Q Consensus 201 ~~lf~~ai~v~k~----Vr~----et~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~ 271 (513)
.+.|++++.++.. ++. +.... ..+...++++... .. ....|.+|+|.|+|++|.++++.++..|+.
T Consensus 139 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~---~~--~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~ 213 (369)
T cd08301 139 TSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWN---VA--KVKKGSTVAIFGLGAVGLAVAEGARIRGAS 213 (369)
T ss_pred cccceeEEEEecccEEECCCCCCHHHhhhhcchhhHHHHHHHh---hc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence 2456666655442 111 11110 1122334443211 11 234789999999999999999999999997
Q ss_pred eEEEEeCCHHHHHHHHHHhCCcceeecccc---hHHh----hc-CCCcEEEEcCCCCccCCChhhhhcCCchhhhcC-Cc
Q 010322 272 KMVVVNRSEERVAAICEELNGVEIIYKPLS---EMLS----CA-ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVG-GL 342 (513)
Q Consensus 272 ~V~v~nRs~~ra~~la~~~g~~~~~~~~~~---~~~~----~l-~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~-g~ 342 (513)
+|+++++++++. ++++++|.. ..+...+ +..+ .. .++|+||+|++.+..+ ...+..+. ++ |.
T Consensus 214 ~vi~~~~~~~~~-~~~~~~Ga~-~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G~~~~~--~~~~~~~~-----~~~g~ 284 (369)
T cd08301 214 RIIGVDLNPSKF-EQAKKFGVT-EFVNPKDHDKPVQEVIAEMTGGGVDYSFECTGNIDAM--ISAFECVH-----DGWGV 284 (369)
T ss_pred eEEEEcCCHHHH-HHHHHcCCc-eEEcccccchhHHHHHHHHhCCCCCEEEECCCChHHH--HHHHHHhh-----cCCCE
Confidence 799999999887 567788752 1222111 1211 11 2689999999886543 33444432 33 66
Q ss_pred EEEEec
Q 010322 343 RLFIDI 348 (513)
Q Consensus 343 ~viiDl 348 (513)
.++++.
T Consensus 285 ~v~~g~ 290 (369)
T cd08301 285 TVLLGV 290 (369)
T ss_pred EEEECc
Confidence 667765
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.7e-06 Score=78.92 Aligned_cols=97 Identities=21% Similarity=0.340 Sum_probs=64.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.+.|++++|+|.|..|+.+|+.|+..|+ +|+|++.+|-++-+ ..+.+ +.+. .+.+++..+|++|+|||.. .
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alq--A~~dG--f~v~---~~~~a~~~adi~vtaTG~~-~ 90 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQ--AAMDG--FEVM---TLEEALRDADIFVTATGNK-D 90 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHH--HHHTT---EEE----HHHHTTT-SEEEE-SSSS-S
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHH--hhhcC--cEec---CHHHHHhhCCEEEECCCCc-c
Confidence 4689999999999999999999999998 59999999987633 22222 2333 4566788999999999986 4
Q ss_pred CCChhhhhcCCchhhhcCCcEEEEecc-CCCCCC
Q 010322 323 LFLKDHVQDLPPVEAAVGGLRLFIDIS-VPRNVG 355 (513)
Q Consensus 323 vi~~~~l~~~~~~~~~~~g~~viiDla-vPrdid 355 (513)
+++.+++..+. ...++.+++ .+..|+
T Consensus 91 vi~~e~~~~mk-------dgail~n~Gh~d~Eid 117 (162)
T PF00670_consen 91 VITGEHFRQMK-------DGAILANAGHFDVEID 117 (162)
T ss_dssp SB-HHHHHHS--------TTEEEEESSSSTTSBT
T ss_pred ccCHHHHHHhc-------CCeEEeccCcCceeEe
Confidence 56778888763 237778875 344444
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.4e-07 Score=91.61 Aligned_cols=187 Identities=13% Similarity=0.193 Sum_probs=121.4
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchHHHHH---HHhHh----------cCcccchh-----hHHHHHHHhhCc-
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVV---KVGQG----------VVGFGRNI-----SGLFKHAISVGK- 212 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~---~~a~~----------~~~~g~~L-----~~lf~~ai~v~k- 212 (513)
...|||-++.+.+|++.+..+-+|+..=++-+-... +.|+. ....|.+- .++|++++.+..
T Consensus 67 lV~GHEiaG~VvkvGs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~ 146 (360)
T KOG0023|consen 67 LVPGHEIAGVVVKVGSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEV 146 (360)
T ss_pred ccCCceeeEEEEEECCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEEEeee
Confidence 457999999999999999999999976555432222 22222 11123333 345998876654
Q ss_pred ---cccccccc-cCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 010322 213 ---RVRTETNI-AAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE 288 (513)
Q Consensus 213 ---~Vr~et~i-~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~ 288 (513)
+++..+.+ ...|+=+|-..|--+-...+ --+|++|.|+|+|++|...+++.+++|.+ |++++++..+.++..+
T Consensus 147 ~a~kIP~~~pl~~aAPlLCaGITvYspLk~~g--~~pG~~vgI~GlGGLGh~aVq~AKAMG~r-V~vis~~~~kkeea~~ 223 (360)
T KOG0023|consen 147 FAIKIPENLPLASAAPLLCAGITVYSPLKRSG--LGPGKWVGIVGLGGLGHMAVQYAKAMGMR-VTVISTSSKKKEEAIK 223 (360)
T ss_pred eEEECCCCCChhhccchhhcceEEeehhHHcC--CCCCcEEEEecCcccchHHHHHHHHhCcE-EEEEeCCchhHHHHHH
Confidence 34444432 22344444333322222232 23899999999999999999999999995 9999999877778888
Q ss_pred HhCCcceeecccc--h-HHhhcCCCcEEEEcCC--CCccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 289 ELNGVEIIYKPLS--E-MLSCAADADVVFTSTA--SEAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 289 ~~g~~~~~~~~~~--~-~~~~l~~aDVVI~AT~--s~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
.+|+..+ ++..+ + ..++....|-++.+++ +.+++ ...+.-+. ++|+.++++++
T Consensus 224 ~LGAd~f-v~~~~d~d~~~~~~~~~dg~~~~v~~~a~~~~--~~~~~~lk-----~~Gt~V~vg~p 281 (360)
T KOG0023|consen 224 SLGADVF-VDSTEDPDIMKAIMKTTDGGIDTVSNLAEHAL--EPLLGLLK-----VNGTLVLVGLP 281 (360)
T ss_pred hcCccee-EEecCCHHHHHHHHHhhcCcceeeeeccccch--HHHHHHhh-----cCCEEEEEeCc
Confidence 8886422 22232 2 3444556788888888 77775 33343332 46889999874
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.7e-07 Score=89.94 Aligned_cols=184 Identities=15% Similarity=0.232 Sum_probs=118.2
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhh---chHHH-------HHHHhHhcCc-----------------ccch-hhH-
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQIL---AQVKQ-------VVKVGQGVVG-----------------FGRN-ISG- 202 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIl---gQvk~-------A~~~a~~~~~-----------------~g~~-L~~- 202 (513)
...|||+++-+..|+.|++.+..|+.+|. .|+.. --++|.+... -|.. .+.
T Consensus 63 ~IlGHEaaGIVESvGegV~~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfm 142 (375)
T KOG0022|consen 63 VILGHEAAGIVESVGEGVTTVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFM 142 (375)
T ss_pred eEecccceeEEEEecCCccccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEec
Confidence 56899999999999999999999999884 33321 0111111100 0110 011
Q ss_pred ---HHHHHHhhCc----ccccc-----ccccCCCchHHHHHH-HHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcC
Q 010322 203 ---LFKHAISVGK----RVRTE-----TNIAAGAVSVSSAAV-ELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKG 269 (513)
Q Consensus 203 ---lf~~ai~v~k----~Vr~e-----t~i~~~~~Sva~~Av-~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G 269 (513)
-|.+|--++. ++... ..+..-.+|.+|-|+ ..|+ .-+|.++.|+|.|.+|.+++..++..|
T Consensus 143 g~StFsEYTVv~~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~~~Ak------v~~GstvAVfGLG~VGLav~~Gaka~G 216 (375)
T KOG0022|consen 143 GTSTFSEYTVVDDISVAKIDPSAPLEKVCLLGCGVSTGYGAAWNTAK------VEPGSTVAVFGLGGVGLAVAMGAKAAG 216 (375)
T ss_pred ccccceeEEEeecceeEecCCCCChhheeEeeccccccchhhhhhcc------cCCCCEEEEEecchHHHHHHHhHHhcC
Confidence 1222211111 11111 112223566676553 3332 347999999999999999999999999
Q ss_pred CCeEEEEeCCHHHHHHHHHHhCCcceeeccc--ch-HHhhc-----CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCC
Q 010322 270 CTKMVVVNRSEERVAAICEELNGVEIIYKPL--SE-MLSCA-----ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGG 341 (513)
Q Consensus 270 ~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~--~~-~~~~l-----~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g 341 (513)
+.+|+-+|-+++|. +.++++|..+ -++|. .+ +.+.+ .++|.-|+|+|....+ .+.+..... ..|
T Consensus 217 AsrIIgvDiN~~Kf-~~ak~fGaTe-~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~~~m--~~al~s~h~----GwG 288 (375)
T KOG0022|consen 217 ASRIIGVDINPDKF-EKAKEFGATE-FINPKDLKKPIQEVIIEMTDGGVDYSFECIGNVSTM--RAALESCHK----GWG 288 (375)
T ss_pred cccEEEEecCHHHH-HHHHhcCcce-ecChhhccccHHHHHHHHhcCCceEEEEecCCHHHH--HHHHHHhhc----CCC
Confidence 99999999999998 7799998642 23333 11 23332 4899999999998776 556655432 348
Q ss_pred cEEEEecc
Q 010322 342 LRLFIDIS 349 (513)
Q Consensus 342 ~~viiDla 349 (513)
..++|+++
T Consensus 289 ~sv~iGv~ 296 (375)
T KOG0022|consen 289 KSVVIGVA 296 (375)
T ss_pred eEEEEEec
Confidence 88999985
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.7e-06 Score=87.74 Aligned_cols=93 Identities=18% Similarity=0.216 Sum_probs=68.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.+.|++|+|+|+|.+|+.++..|+..|+ +|+++++++.++.. +...|. .+.+ +.+.+.++|+||+||+.+.
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~-A~~~G~---~v~~---l~eal~~aDVVI~aTG~~~- 279 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQ-AAMDGF---RVMT---MEEAAELGDIFVTATGNKD- 279 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHH-HHhcCC---EecC---HHHHHhCCCEEEECCCCHH-
Confidence 4689999999999999999999999999 59999999888633 333342 3333 3455679999999998765
Q ss_pred CCChhhhhcCCchhhhcCCcEEEEeccCC
Q 010322 323 LFLKDHVQDLPPVEAAVGGLRLFIDISVP 351 (513)
Q Consensus 323 vi~~~~l~~~~~~~~~~~g~~viiDlavP 351 (513)
+++.+.+..+. .| .+++.++.+
T Consensus 280 vI~~~~~~~mK------~G-ailiNvG~~ 301 (425)
T PRK05476 280 VITAEHMEAMK------DG-AILANIGHF 301 (425)
T ss_pred HHHHHHHhcCC------CC-CEEEEcCCC
Confidence 55656666543 12 456655543
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.4e-06 Score=82.39 Aligned_cols=78 Identities=14% Similarity=0.241 Sum_probs=61.1
Q ss_pred CCCCCCeEEEEcccH-HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 242 SSHATARMLVIGAGK-MGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~-mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.++.|++|+|+|+|+ .|+.++..|...|+ .|++++|. ...++ +.+.++|+||+|||.+
T Consensus 155 i~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~---t~~L~-----------------~~~~~aDIvI~AtG~~ 213 (283)
T PRK14192 155 IELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSR---TQNLP-----------------ELVKQADIIVGAVGKP 213 (283)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCC---chhHH-----------------HHhccCCEEEEccCCC
Confidence 468999999999998 99999999999999 79999983 22222 2336899999999988
Q ss_pred ccCCChhhhhcCCchhhhcCCcEEEEeccCC
Q 010322 321 APLFLKDHVQDLPPVEAAVGGLRLFIDISVP 351 (513)
Q Consensus 321 ~~vi~~~~l~~~~~~~~~~~g~~viiDlavP 351 (513)
.+ ++.+++.. ..+++|+++-
T Consensus 214 ~~-v~~~~lk~----------gavViDvg~n 233 (283)
T PRK14192 214 EL-IKKDWIKQ----------GAVVVDAGFH 233 (283)
T ss_pred Cc-CCHHHcCC----------CCEEEEEEEe
Confidence 75 56666532 2789999753
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.2e-07 Score=83.52 Aligned_cols=91 Identities=23% Similarity=0.363 Sum_probs=62.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccCCCh
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLK 326 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~ 326 (513)
++|.|||.|.||..++++|...|.. |+++||++++++++.+. +. ...++..+.+..+|+||.|++.+..+ .
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~~~~~~~~~~-g~-----~~~~s~~e~~~~~dvvi~~v~~~~~v--~ 72 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSPEKAEALAEA-GA-----EVADSPAEAAEQADVVILCVPDDDAV--E 72 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSHHHHHHHHHT-TE-----EEESSHHHHHHHBSEEEE-SSSHHHH--H
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccchhhhhhhHHh-hh-----hhhhhhhhHhhcccceEeecccchhh--h
Confidence 5799999999999999999999985 99999999999888765 31 23356666677889999999986553 2
Q ss_pred hhhhc--CCchhhhcCCcEEEEecc
Q 010322 327 DHVQD--LPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 327 ~~l~~--~~~~~~~~~g~~viiDla 349 (513)
+.+.. +.+. .....++||++
T Consensus 73 ~v~~~~~i~~~---l~~g~iiid~s 94 (163)
T PF03446_consen 73 AVLFGENILAG---LRPGKIIIDMS 94 (163)
T ss_dssp HHHHCTTHGGG---S-TTEEEEE-S
T ss_pred hhhhhhHHhhc---cccceEEEecC
Confidence 22221 1110 12347889986
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PLN02702 L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.5e-06 Score=89.05 Aligned_cols=182 Identities=19% Similarity=0.294 Sum_probs=111.7
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCccc-chhhHHHHHHHhhCc--------c
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVGFG-RNISGLFKHAISVGK--------R 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~~g-~~L~~lf~~ai~v~k--------~ 213 (513)
..|||+++.+.+++++++.+.+|+..+.... .+-++.|.+...++ ...++.|++++.++. .
T Consensus 76 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~P~~ 155 (364)
T PLN02702 76 VIGHECAGIIEEVGSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPEN 155 (364)
T ss_pred ccccceeEEEEEECCCCCCCCCCCEEEEcCCCCCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEECCCC
Confidence 4699999999999999988889998876321 12233333221111 112456666665544 2
Q ss_pred ccccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc
Q 010322 214 VRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV 293 (513)
Q Consensus 214 Vr~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~ 293 (513)
+..+......+.++++.++..+ ....+.+|+|+|+|.+|.++++.++..|+..|++++++.++. ++++++|..
T Consensus 156 l~~~~aa~~~~~~~a~~~~~~~------~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~-~~~~~~g~~ 228 (364)
T PLN02702 156 VSLEEGAMCEPLSVGVHACRRA------NIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERL-SVAKQLGAD 228 (364)
T ss_pred CCHHHHhhhhHHHHHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHhCCC
Confidence 2222222224566666655332 234689999999999999999999999998788899988776 567778742
Q ss_pred ceeecc-c-chHHhh--------cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 294 EIIYKP-L-SEMLSC--------AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 294 ~~~~~~-~-~~~~~~--------l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
...... . .+..+. -.++|+||+|++.+..+ .+.++.+. .+|..+.++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~--~~~~~~l~-----~~G~~v~~g~ 286 (364)
T PLN02702 229 EIVLVSTNIEDVESEVEEIQKAMGGGIDVSFDCVGFNKTM--STALEATR-----AGGKVCLVGM 286 (364)
T ss_pred EEEecCcccccHHHHHHHHhhhcCCCCCEEEECCCCHHHH--HHHHHHHh-----cCCEEEEEcc
Confidence 211111 1 122111 13689999999865443 34444432 3565555553
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.1e-06 Score=93.63 Aligned_cols=184 Identities=14% Similarity=0.181 Sum_probs=106.1
Q ss_pred HhcCCceeeeeeeeccCCC-CcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCcc------------ccccc
Q 010322 152 LLYNKDATQHLFEVSAGLD-SLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKR------------VRTET 218 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGld-S~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~------------Vr~et 218 (513)
...|||+++.+.+|++++. .+.+|++.+....-. ...|..+...|...++.|++++.++.. +..+.
T Consensus 64 ~i~GhE~~G~V~~vG~~v~~~~~vGdrV~~~~~~~-c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~ 142 (410)
T cd08238 64 VILGHEFAGTILKVGKKWQGKYKPGQRFVIQPALI-LPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYEGDGYAE 142 (410)
T ss_pred ceeccccEEEEEEeCCCccCCCCCCCEEEEcCCcC-CCCCCCCCCccccCCCcceEEEEecHHhccCCeEECCCCCCHHH
Confidence 3579999999999999998 489999887642210 000000001222345777776666543 11112
Q ss_pred cccCCCchHHHHHHHHHH--------hhCCCCCCCCCeEEEEc-ccHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHH
Q 010322 219 NIAAGAVSVSSAAVELAL--------MKLPESSHATARMLVIG-AGKMGKLVIKHLVAKG--CTKMVVVNRSEERVAAIC 287 (513)
Q Consensus 219 ~i~~~~~Sva~~Av~la~--------~~~~~~~l~g~~VlVIG-aG~mG~~ia~~L~~~G--~~~V~v~nRs~~ra~~la 287 (513)
....+|.+++.++..... ... ....|.+|+|+| +|++|.++++.++..| +.+|++++++++|. +++
T Consensus 143 aal~epl~~~~~~~~a~~~~~~~~~~~~~--~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~-~~a 219 (410)
T cd08238 143 ASLVEPLSCVIGAYTANYHLQPGEYRHRM--GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERL-ARA 219 (410)
T ss_pred HhhcchHHHHHHHhhhcccccccchhhhc--CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHH-HHH
Confidence 222245555433321100 111 234688999998 5999999999998875 45799999999988 566
Q ss_pred HHh--------CCcceeeccc--chHHh----hc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEE
Q 010322 288 EEL--------NGVEIIYKPL--SEMLS----CA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFI 346 (513)
Q Consensus 288 ~~~--------g~~~~~~~~~--~~~~~----~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~vii 346 (513)
+++ |.....+.+. ++..+ .. .++|+||++++.+..+ ...++.+. ++|..+++
T Consensus 220 ~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~g~D~vid~~g~~~~~--~~a~~~l~-----~~G~~v~~ 287 (410)
T cd08238 220 QRLFPPEAASRGIELLYVNPATIDDLHATLMELTGGQGFDDVFVFVPVPELV--EEADTLLA-----PDGCLNFF 287 (410)
T ss_pred HHhccccccccCceEEEECCCccccHHHHHHHHhCCCCCCEEEEcCCCHHHH--HHHHHHhc-----cCCeEEEE
Confidence 665 3210112221 12222 22 3699999999876544 34454432 24555554
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.2e-06 Score=87.61 Aligned_cols=181 Identities=17% Similarity=0.274 Sum_probs=111.2
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchHH----------HHHHHhHhc--Cc-ccchhhHHHHHHHhhCc------
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQVK----------QVVKVGQGV--VG-FGRNISGLFKHAISVGK------ 212 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk----------~A~~~a~~~--~~-~g~~L~~lf~~ai~v~k------ 212 (513)
...|||+++.+.+++++++...+|+..+...+. +-++.|... +. .+...++.|++++.++.
T Consensus 55 ~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~ 134 (351)
T cd08285 55 MILGHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLA 134 (351)
T ss_pred cccCcceEEEEEEecCCcCccCCCCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceE
Confidence 457999999999999999999999998763221 111112110 00 01112455665555543
Q ss_pred ----cccccccc-cCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Q 010322 213 ----RVRTETNI-AAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIC 287 (513)
Q Consensus 213 ----~Vr~et~i-~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la 287 (513)
.+..+... ...+..++++++..+ ....|++|+|.|+|.+|.++++.++..|+..|++++++.++. +++
T Consensus 135 ~lP~~~~~~~aa~~~~~~~ta~~~~~~~------~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~-~~~ 207 (351)
T cd08285 135 PLPDGLTDEQAVMLPDMMSTGFHGAELA------NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRV-ELA 207 (351)
T ss_pred ECCCCCCHHHhhhhccchhhHHHHHHcc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHH
Confidence 11111111 123556666664432 234689999999999999999999999998789999998876 777
Q ss_pred HHhCCcceeecccc--h----HHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 288 EELNGVEIIYKPLS--E----MLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 288 ~~~g~~~~~~~~~~--~----~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+++|.. .+.+.. + +.... .++|++++|++.+..+ .+.++.+. ++|..+.++.
T Consensus 208 ~~~g~~--~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~~~~~--~~~~~~l~-----~~G~~v~~g~ 267 (351)
T cd08285 208 KEYGAT--DIVDYKNGDVVEQILKLTGGKGVDAVIIAGGGQDTF--EQALKVLK-----PGGTISNVNY 267 (351)
T ss_pred HHcCCc--eEecCCCCCHHHHHHHHhCCCCCcEEEECCCCHHHH--HHHHHHhh-----cCCEEEEecc
Confidence 788742 222211 1 22222 3689999999975433 33444432 3565665654
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=98.30 E-value=3e-06 Score=88.20 Aligned_cols=180 Identities=18% Similarity=0.276 Sum_probs=108.7
Q ss_pred hcCCceeeeeeeeccCCCC------cccCcchhhchH---------H-HHHHHhHhcCcccc-------hhhHHHHHHHh
Q 010322 153 LYNKDATQHLFEVSAGLDS------LVLGEGQILAQV---------K-QVVKVGQGVVGFGR-------NISGLFKHAIS 209 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS------~vvGE~qIlgQv---------k-~A~~~a~~~~~~g~-------~L~~lf~~ai~ 209 (513)
..|||+++.+.+|++++.+ +.+|+..+.... + +..+.|......|. ...+.|++++.
T Consensus 57 ~~G~e~~G~V~~vG~~v~~~~~~~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~ 136 (361)
T cd08231 57 ILGHEGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIY 136 (361)
T ss_pred ccccCCceEEEEeCCCccccccCCccCCCCEEEEcccCCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEE
Confidence 5799999999999999986 889998876311 0 11112221111111 12467777776
Q ss_pred hCcc-----ccccc----cccC-CCchHHHHHHHHHHhhCCCCCC-CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeC
Q 010322 210 VGKR-----VRTET----NIAA-GAVSVSSAAVELALMKLPESSH-ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNR 278 (513)
Q Consensus 210 v~k~-----Vr~et----~i~~-~~~Sva~~Av~la~~~~~~~~l-~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR 278 (513)
++.. ++... .... .+.++++.++... ... .|.+|+|.|+|.+|.++++.++..|+++|+++.+
T Consensus 137 v~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~al~~~------~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~ 210 (361)
T cd08231 137 LPPGTAIVRVPDNVPDEVAAPANCALATVLAALDRA------GPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDG 210 (361)
T ss_pred ecCCCceEECCCCCCHHHHHHhcCHHHHHHHHHHhc------cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 6542 12111 1111 3344455555432 233 7899999999999999999999999966999999
Q ss_pred CHHHHHHHHHHhCCcceeeccc----c----hHHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 279 SEERVAAICEELNGVEIIYKPL----S----EMLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 279 s~~ra~~la~~~g~~~~~~~~~----~----~~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
++++. .+++++|... .+... . .+.+.. .++|+||+|++....+ ...+..+. .+|..+.++
T Consensus 211 ~~~~~-~~~~~~g~~~-vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~--~~~~~~l~-----~~G~~v~~g 280 (361)
T cd08231 211 SPERL-ELAREFGADA-TIDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAV--PEGLELLR-----RGGTYVLVG 280 (361)
T ss_pred CHHHH-HHHHHcCCCe-EEcCcccccHHHHHHHHHHhCCCCCcEEEECCCChHHH--HHHHHHhc-----cCCEEEEEc
Confidence 98887 5566777421 11111 1 112222 3689999999875433 33444432 356566554
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.9e-06 Score=84.69 Aligned_cols=170 Identities=12% Similarity=0.037 Sum_probs=100.9
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccc-c----ccCCCchH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTET-N----IAAGAVSV 227 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et-~----i~~~~~Sv 227 (513)
..|+|+++.+.+|+++++.+.+|+..+... +....+..---..++.+++.+.... . ....+..+
T Consensus 71 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-----------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~t 139 (345)
T cd08293 71 SQVLDGGGVGVVEESKHQKFAVGDIVTSFN-----------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLT 139 (345)
T ss_pred CCceEeeEEEEEeccCCCCCCCCCEEEecC-----------CCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHH
Confidence 369999999999999999999999887421 1111111000012233333221111 0 11123334
Q ss_pred HHHHHHHHHhhCCCCCCCC--CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-chH
Q 010322 228 SSAAVELALMKLPESSHAT--ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL-SEM 303 (513)
Q Consensus 228 a~~Av~la~~~~~~~~l~g--~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~-~~~ 303 (513)
++.++... . ....| ++|+|.|+ |++|.++++.++..|+.+|+++.++.++.+.+.+++|... .+... .++
T Consensus 140 a~~al~~~---~--~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~-vi~~~~~~~ 213 (345)
T cd08293 140 ALIGIQEK---G--HITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDA-AINYKTDNV 213 (345)
T ss_pred HHHHHHHh---c--cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcE-EEECCCCCH
Confidence 44443211 0 11234 89999998 9999999999999998669999999888866666687532 22211 122
Q ss_pred Hhh----c-CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 304 LSC----A-ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 304 ~~~----l-~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
.+. . .++|+||+|++.+. + .+.+..+. ++|..+.++
T Consensus 214 ~~~i~~~~~~gvd~vid~~g~~~-~--~~~~~~l~-----~~G~iv~~G 254 (345)
T cd08293 214 AERLRELCPEGVDVYFDNVGGEI-S--DTVISQMN-----ENSHIILCG 254 (345)
T ss_pred HHHHHHHCCCCceEEEECCCcHH-H--HHHHHHhc-----cCCEEEEEe
Confidence 221 1 47999999998753 2 34555443 467677665
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.3e-06 Score=79.07 Aligned_cols=93 Identities=17% Similarity=0.280 Sum_probs=68.4
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCC--
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTAS-- 319 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s-- 319 (513)
..+.|++|+|||.|.+|+.+++.|...|+ +|++++|+...... ....+ + .+.++.+.+..+|+|+.+.+.
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~-~~~~~---~---~~~~l~ell~~aDiv~~~~plt~ 103 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEG-ADEFG---V---EYVSLDELLAQADIVSLHLPLTP 103 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHH-HHHTT---E---EESSHHHHHHH-SEEEE-SSSST
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhh-ccccc---c---eeeehhhhcchhhhhhhhhcccc
Confidence 46789999999999999999999999999 59999999765431 22222 2 334666777889999999775
Q ss_pred -CccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 320 -EAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 320 -~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
...+|+.+.+..+. ...++|.++
T Consensus 104 ~T~~li~~~~l~~mk-------~ga~lvN~a 127 (178)
T PF02826_consen 104 ETRGLINAEFLAKMK-------PGAVLVNVA 127 (178)
T ss_dssp TTTTSBSHHHHHTST-------TTEEEEESS
T ss_pred ccceeeeeeeeeccc-------cceEEEecc
Confidence 45788988888764 237888876
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=3e-06 Score=85.70 Aligned_cols=71 Identities=28% Similarity=0.408 Sum_probs=58.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPL 323 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~v 323 (513)
.+|.+||.|.||..++.+|...|.. ++++||+++++.+++...|.. ...+..+....+|+||+|.+.+..+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~-v~v~~r~~~ka~~~~~~~Ga~-----~a~s~~eaa~~aDvVitmv~~~~~V 71 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHE-VTVYNRTPEKAAELLAAAGAT-----VAASPAEAAAEADVVITMLPDDAAV 71 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCE-EEEEeCChhhhhHHHHHcCCc-----ccCCHHHHHHhCCEEEEecCCHHHH
Confidence 3799999999999999999999984 999999999976777776642 2344566778999999999987654
|
|
| >cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.3e-06 Score=86.20 Aligned_cols=181 Identities=15% Similarity=0.162 Sum_probs=108.9
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhc--h----HH----HHHHHhHhcCcccchhhHHHHHHHhhCcc------cc
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILA--Q----VK----QVVKVGQGVVGFGRNISGLFKHAISVGKR------VR 215 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlg--Q----vk----~A~~~a~~~~~~g~~L~~lf~~ai~v~k~------Vr 215 (513)
...|||+++.+.+|++++..+.+|+..+.. . +. .....|....+.|...++.|++++.++.. ++
T Consensus 55 ~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP 134 (345)
T cd08287 55 APIGHEFVGVVEEVGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVKVP 134 (345)
T ss_pred cccccceEEEEEEeCCCCCccCCCCEEEeccccCCCCChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEECC
Confidence 357999999999999999888899988752 1 10 11122222223333345666666655431 12
Q ss_pred ccccc----c------CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 010322 216 TETNI----A------AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAA 285 (513)
Q Consensus 216 ~et~i----~------~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~ 285 (513)
..... . ..+..++++++..+ ....|.+|+|.|+|.+|.++++.++..|++.++++++++++. +
T Consensus 135 ~~l~~~~~~~~~~~~l~~~~~~a~~~~~~~------~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~-~ 207 (345)
T cd08287 135 GSPSDDEDLLPSLLALSDVMGTGHHAAVSA------GVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQ-A 207 (345)
T ss_pred CCCChhhhhhhhhHhhhcHHHHHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-H
Confidence 11111 0 02344455554422 234689999999999999999999999997788888887776 6
Q ss_pred HHHHhCCcceeecccc-----hHHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 286 ICEELNGVEIIYKPLS-----EMLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 286 la~~~g~~~~~~~~~~-----~~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
+++++|. +..+.... .+.... .++|++++|++++..+ ...++.+. .+|..+.++
T Consensus 208 ~~~~~ga-~~v~~~~~~~~~~~i~~~~~~~~~d~il~~~g~~~~~--~~~~~~l~-----~~g~~v~~g 268 (345)
T cd08287 208 LAREFGA-TDIVAERGEEAVARVRELTGGVGADAVLECVGTQESM--EQAIAIAR-----PGGRVGYVG 268 (345)
T ss_pred HHHHcCC-ceEecCCcccHHHHHHHhcCCCCCCEEEECCCCHHHH--HHHHHhhc-----cCCEEEEec
Confidence 7777874 22222211 122222 3599999999875433 33344432 245555544
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.20 E-value=2e-05 Score=83.68 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=61.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.+.|++|+|+|+|++|+.+++.++..|++ |+++++++.++ ..+...|. .+.+. .+.+.++|+||+||+.+.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~-ViV~d~dp~r~-~~A~~~G~---~v~~l---eeal~~aDVVItaTG~~~- 262 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGAR-VIVTEVDPIRA-LEAAMDGF---RVMTM---EEAAKIGDIFITATGNKD- 262 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCE-EEEEeCChhhH-HHHHhcCC---EeCCH---HHHHhcCCEEEECCCCHH-
Confidence 46899999999999999999999999995 99999998876 33444442 33333 345688999999999754
Q ss_pred CCChhhhhcC
Q 010322 323 LFLKDHVQDL 332 (513)
Q Consensus 323 vi~~~~l~~~ 332 (513)
+++.+.+..+
T Consensus 263 vI~~~~~~~m 272 (406)
T TIGR00936 263 VIRGEHFENM 272 (406)
T ss_pred HHHHHHHhcC
Confidence 4555566554
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.20 E-value=2e-05 Score=76.02 Aligned_cols=93 Identities=26% Similarity=0.346 Sum_probs=71.1
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.++.|++|+|+|.|.||+.+++.|...|+ +|+++|+++++...+++.++. ...+.+++.. ..+|+++.|+..
T Consensus 24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~---~~v~~~~l~~--~~~Dv~vp~A~~-- 95 (200)
T cd01075 24 DSLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGA---TVVAPEEIYS--VDADVFAPCALG-- 95 (200)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCC---EEEcchhhcc--ccCCEEEecccc--
Confidence 57899999999999999999999999998 588999999988888877753 2333333322 379999988764
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEeccC
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDISV 350 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDlav 350 (513)
.+++.+.++.+. ..++++-+.
T Consensus 96 ~~I~~~~~~~l~--------~~~v~~~AN 116 (200)
T cd01075 96 GVINDDTIPQLK--------AKAIAGAAN 116 (200)
T ss_pred cccCHHHHHHcC--------CCEEEECCc
Confidence 467777776642 257777664
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.1e-06 Score=70.54 Aligned_cols=92 Identities=26% Similarity=0.429 Sum_probs=63.1
Q ss_pred eEEEEcccHHHHHHHHHHHHcC--CCeEEEE-eCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKG--CTKMVVV-NRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLF 324 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G--~~~V~v~-nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi 324 (513)
+|.|||+|.||.++++.|...| ..+|+++ +|+++++.+++++++. .+.. .+..+.+..+|+||.|++....
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~---~~~~-~~~~~~~~~advvilav~p~~~-- 74 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGV---QATA-DDNEEAAQEADVVILAVKPQQL-- 74 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTT---EEES-EEHHHHHHHTSEEEE-S-GGGH--
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhcc---cccc-CChHHhhccCCEEEEEECHHHH--
Confidence 5899999999999999999998 2368855 9999999999998863 2222 2445566789999999987643
Q ss_pred ChhhhhcCCchhhhcCCcEEEEeccC
Q 010322 325 LKDHVQDLPPVEAAVGGLRLFIDISV 350 (513)
Q Consensus 325 ~~~~l~~~~~~~~~~~g~~viiDlav 350 (513)
.+.+..+.. .....++||+..
T Consensus 75 -~~v~~~i~~----~~~~~~vis~~a 95 (96)
T PF03807_consen 75 -PEVLSEIPH----LLKGKLVISIAA 95 (96)
T ss_dssp -HHHHHHHHH----HHTTSEEEEEST
T ss_pred -HHHHHHHhh----ccCCCEEEEeCC
Confidence 223322210 113367888754
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.4e-06 Score=86.65 Aligned_cols=184 Identities=15% Similarity=0.151 Sum_probs=110.8
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCcc---cc-----------------h-hh
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVGF---GR-----------------N-IS 201 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~~---g~-----------------~-L~ 201 (513)
..|||+++.+..++++++.+.+|+....... .+..+.|...... |. + ..
T Consensus 63 v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (373)
T cd08299 63 ILGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGT 142 (373)
T ss_pred cccccceEEEEEeCCCCccCCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCC
Confidence 4699999999999999998899998875321 1122333322111 00 0 13
Q ss_pred HHHHHHHhhCcc----cccc----ccccC-CCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCe
Q 010322 202 GLFKHAISVGKR----VRTE----TNIAA-GAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTK 272 (513)
Q Consensus 202 ~lf~~ai~v~k~----Vr~e----t~i~~-~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~ 272 (513)
+.|.+++.++.. ++.. ..... -+..++++++.. .. ....|.+|+|+|+|++|.+++..++..|+.+
T Consensus 143 G~~~e~~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~---~~--~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~ 217 (373)
T cd08299 143 STFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVN---TA--KVTPGSTCAVFGLGGVGLSAIMGCKAAGASR 217 (373)
T ss_pred CcccceEEecccceeeCCCCCChHHhheeccchHHHHHHHHh---cc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence 667777776653 2211 11111 134455554321 11 2346899999999999999999999999967
Q ss_pred EEEEeCCHHHHHHHHHHhCCcceeeccc--c-hHHhh----c-CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEE
Q 010322 273 MVVVNRSEERVAAICEELNGVEIIYKPL--S-EMLSC----A-ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRL 344 (513)
Q Consensus 273 V~v~nRs~~ra~~la~~~g~~~~~~~~~--~-~~~~~----l-~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~v 344 (513)
|++++++.++. ++++.+|.. ..+... + +..+. . .++|+||+|++.+..+ .+.+....+ .+|..+
T Consensus 218 Vi~~~~~~~~~-~~a~~lGa~-~~i~~~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~--~~~~~~~~~----~~G~~v 289 (373)
T cd08299 218 IIAVDINKDKF-AKAKELGAT-ECINPQDYKKPIQEVLTEMTDGGVDFSFEVIGRLDTM--KAALASCHE----GYGVSV 289 (373)
T ss_pred EEEEcCCHHHH-HHHHHcCCc-eEecccccchhHHHHHHHHhCCCCeEEEECCCCcHHH--HHHHHhhcc----CCCEEE
Confidence 99999998887 555777742 122211 1 11111 1 3699999999975543 223332211 256677
Q ss_pred EEecc
Q 010322 345 FIDIS 349 (513)
Q Consensus 345 iiDla 349 (513)
.++..
T Consensus 290 ~~g~~ 294 (373)
T cd08299 290 IVGVP 294 (373)
T ss_pred EEccC
Confidence 77653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.7e-06 Score=83.50 Aligned_cols=180 Identities=12% Similarity=0.153 Sum_probs=107.2
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch-------H----HHHHHHhHhcCcccchhhHHHHHHHhhCc--------c
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ-------V----KQVVKVGQGVVGFGRNISGLFKHAISVGK--------R 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ-------v----k~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~ 213 (513)
..|||+++.+.+++++++..-+|++.+... + .+.++.|......|...++.|.+++.++. .
T Consensus 57 ~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~lp~~ 136 (333)
T cd08296 57 VPGHEVVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDD 136 (333)
T ss_pred ccCcceeEEEEEECCCCccCCCCCEEEeccccCCCCCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEeCCCC
Confidence 469999999999999998888999987521 1 12333443322222212345555444443 2
Q ss_pred cccccccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC
Q 010322 214 VRTETNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG 292 (513)
Q Consensus 214 Vr~et~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~ 292 (513)
+..+.... ..+...++.++..+ ....+.+|+|.|+|.+|.++++.++..|++ |++++++.++. +++.++|.
T Consensus 137 ~~~~~aa~l~~~~~ta~~~~~~~------~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~-vi~~~~~~~~~-~~~~~~g~ 208 (333)
T cd08296 137 LDAAEAAPLLCAGVTTFNALRNS------GAKPGDLVAVQGIGGLGHLAVQYAAKMGFR-TVAISRGSDKA-DLARKLGA 208 (333)
T ss_pred CCHHHhhhhhhhhHHHHHHHHhc------CCCCCCEEEEECCcHHHHHHHHHHHHCCCe-EEEEeCChHHH-HHHHHcCC
Confidence 22111111 11222334444322 134688999999999999999999999995 88999998887 56677874
Q ss_pred cceeecccc-hHHh---hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 293 VEIIYKPLS-EMLS---CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 293 ~~~~~~~~~-~~~~---~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
. ..+...+ +..+ .+.++|++|++++.+..+ ...++.+. .+|..+.++.
T Consensus 209 ~-~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~--~~~~~~l~-----~~G~~v~~g~ 260 (333)
T cd08296 209 H-HYIDTSKEDVAEALQELGGAKLILATAPNAKAI--SALVGGLA-----PRGKLLILGA 260 (333)
T ss_pred c-EEecCCCccHHHHHHhcCCCCEEEECCCchHHH--HHHHHHcc-----cCCEEEEEec
Confidence 2 1222111 2211 135789999998765443 33444432 3566666654
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.2e-05 Score=78.30 Aligned_cols=169 Identities=17% Similarity=0.187 Sum_probs=102.9
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccccCCCchHHHHH
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAA 231 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~~~~~Sva~~A 231 (513)
...|+|+++.+.+++++++...+|+..+.-. ....+..---...+.+++.+..+......+..+++++
T Consensus 22 ~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~------------~~~~~~~v~~~~~~~ip~~l~~~~aa~~~~~~ta~~~ 89 (277)
T cd08255 22 LPPGYSSVGRVVEVGSGVTGFKPGDRVFCFG------------PHAERVVVPANLLVPLPDGLPPERAALTALAATALNG 89 (277)
T ss_pred cccCcceeEEEEEeCCCCCCCCCCCEEEecC------------CcceEEEcCHHHeeECcCCCCHHHhHHHHHHHHHHHH
Confidence 5679999999999999998888999877631 0111110000123333433332222222344455555
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCc
Q 010322 232 VELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADAD 311 (513)
Q Consensus 232 v~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aD 311 (513)
+..+ ...+|.+++|.|+|.+|.++++.++..|+++|+++.+++++.. +++++|..+ .+....+....-.++|
T Consensus 90 ~~~~------~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~-~~~~~g~~~-~~~~~~~~~~~~~~~d 161 (277)
T cd08255 90 VRDA------EPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRE-LAEALGPAD-PVAADTADEIGGRGAD 161 (277)
T ss_pred HHhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHH-HHHHcCCCc-cccccchhhhcCCCCC
Confidence 4322 2347899999999999999999999999876888999988884 888876211 1222211111124699
Q ss_pred EEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 312 VVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 312 VVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
+||+|++.+..+ ...+..+. .+|..+.++
T Consensus 162 ~vl~~~~~~~~~--~~~~~~l~-----~~g~~~~~g 190 (277)
T cd08255 162 VVIEASGSPSAL--ETALRLLR-----DRGRVVLVG 190 (277)
T ss_pred EEEEccCChHHH--HHHHHHhc-----CCcEEEEEe
Confidence 999998875433 33444432 345555554
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=83.49 Aligned_cols=175 Identities=19% Similarity=0.220 Sum_probs=105.7
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccccCC-CchHHHH
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAG-AVSVSSA 230 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~~~-~~Sva~~ 230 (513)
...|.|+++.+.+|++|++...+|+..+... ..+ ..|....+..---..++.+|+.+..+...... ..-.++.
T Consensus 59 ~i~G~d~aG~V~avG~~V~~~~~GdrV~~~~-----~~~-~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~ 132 (326)
T COG0604 59 FIPGSEAAGVVVAVGSGVTGFKVGDRVAALG-----GVG-RDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWL 132 (326)
T ss_pred CcccceeEEEEEEeCCCCCCcCCCCEEEEcc-----CCC-CCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999998864 111 11222222111112233334444444332211 1112333
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc--hHHh--
Q 010322 231 AVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS--EMLS-- 305 (513)
Q Consensus 231 Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~--~~~~-- 305 (513)
++.. .. .-..|++|||.|+ |.+|..+++.++..|+. +.++..+.++.+ ++.++|+. .++.+. ++.+
T Consensus 133 ~l~~---~~--~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~-~v~~~~s~~k~~-~~~~lGAd--~vi~y~~~~~~~~v 203 (326)
T COG0604 133 ALFD---RA--GLKPGETVLVHGAAGGVGSAAIQLAKALGAT-VVAVVSSSEKLE-LLKELGAD--HVINYREEDFVEQV 203 (326)
T ss_pred HHHH---hc--CCCCCCEEEEecCCchHHHHHHHHHHHcCCc-EEEEecCHHHHH-HHHhcCCC--EEEcCCcccHHHHH
Confidence 3322 11 1235999999995 99999999999999985 555555557775 88888863 222221 2322
Q ss_pred --hc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 306 --CA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 306 --~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
.. .++|+|+++++.... ...+..+. ++|..+.++..
T Consensus 204 ~~~t~g~gvDvv~D~vG~~~~---~~~l~~l~-----~~G~lv~ig~~ 243 (326)
T COG0604 204 RELTGGKGVDVVLDTVGGDTF---AASLAALA-----PGGRLVSIGAL 243 (326)
T ss_pred HHHcCCCCceEEEECCCHHHH---HHHHHHhc-----cCCEEEEEecC
Confidence 22 269999999998654 23444443 35778888764
|
|
| >cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=98.10 E-value=9.9e-06 Score=83.93 Aligned_cols=161 Identities=18% Similarity=0.287 Sum_probs=101.3
Q ss_pred hcCCceeeeeeeeccCCC--CcccCcchhhchHHH----------HHHHhHhcCcccc--hhhHHHHHHHhhCcc-----
Q 010322 153 LYNKDATQHLFEVSAGLD--SLVLGEGQILAQVKQ----------VVKVGQGVVGFGR--NISGLFKHAISVGKR----- 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGld--S~vvGE~qIlgQvk~----------A~~~a~~~~~~g~--~L~~lf~~ai~v~k~----- 213 (513)
..|+|+++.+.+|+.+++ .+-+|+..+..+... ....|......|. ..++.|++++.++..
T Consensus 65 ~~g~e~~G~v~~vG~~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 144 (350)
T cd08256 65 IPGHEFVGRVVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHK 144 (350)
T ss_pred ccCcceeEEEEEeCCCcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEE
Confidence 369999999999999998 899999887643221 1122221111111 124556665555432
Q ss_pred ----ccccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 010322 214 ----VRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEE 289 (513)
Q Consensus 214 ----Vr~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~ 289 (513)
+..+......+..+++.++..+ ....|.+|+|.|+|.+|.++++.++..|+..|+++++++++. .++++
T Consensus 145 lP~~~~~~~aa~~~~~~ta~~a~~~~------~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~-~~~~~ 217 (350)
T cd08256 145 VPDDIPPEDAILIEPLACALHAVDRA------NIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERL-ALARK 217 (350)
T ss_pred CCCCCCHHHHhhhhHHHHHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHH-HHHHH
Confidence 2222222224555666664332 134689999999999999999999999998788899998887 67777
Q ss_pred hCCcceeeccc-----chHHhhc--CCCcEEEEcCCCCc
Q 010322 290 LNGVEIIYKPL-----SEMLSCA--ADADVVFTSTASEA 321 (513)
Q Consensus 290 ~g~~~~~~~~~-----~~~~~~l--~~aDVVI~AT~s~~ 321 (513)
+|. +..+... +.+.... .++|+|++|++.+.
T Consensus 218 ~g~-~~v~~~~~~~~~~~~~~~~~~~~vdvvld~~g~~~ 255 (350)
T cd08256 218 FGA-DVVLNPPEVDVVEKIKELTGGYGCDIYIEATGHPS 255 (350)
T ss_pred cCC-cEEecCCCcCHHHHHHHHhCCCCCCEEEECCCChH
Confidence 774 2222111 1122222 25899999998643
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.3e-05 Score=64.13 Aligned_cols=68 Identities=28% Similarity=0.490 Sum_probs=54.3
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.++.+++++|+|+|.+|+.++..|...|..+|+++|| |++|+||+.+.
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------------di~i~~~~~~~ 66 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------------DILVTATPAGV 66 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------------CEEEEcCCCCC
Confidence 3578999999999999999999999987778999998 99999999998
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
++.. +.+.... ...+++|++
T Consensus 67 ~~~~-~~~~~~~-------~~~~v~~~a 86 (86)
T cd05191 67 PVLE-EATAKIN-------EGAVVIDLA 86 (86)
T ss_pred CchH-HHHHhcC-------CCCEEEecC
Confidence 8743 2233321 236777764
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.7e-05 Score=76.35 Aligned_cols=180 Identities=19% Similarity=0.281 Sum_probs=105.1
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHH------HHHHHhHhcCcccchhhHHHHHHHhhCc--------cccccc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVK------QVVKVGQGVVGFGRNISGLFKHAISVGK--------RVRTET 218 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk------~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~Vr~et 218 (513)
..|+|+++.+.+++++++.+-+|+..+..... ..-..|......+....+.|++++.++. .+..+.
T Consensus 32 ~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~ 111 (271)
T cd05188 32 ILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRELCPGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEE 111 (271)
T ss_pred ccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHhhCCCCCEeccccCCcceEEEEechHHeEECCCCCCHHH
Confidence 46999999999999999988999988763210 0000232222222223444544444433 222222
Q ss_pred cccC-CCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceee
Q 010322 219 NIAA-GAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIY 297 (513)
Q Consensus 219 ~i~~-~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~ 297 (513)
.... .+..+++.++.... ....+.+|+|.|+|.+|.++++.++..|. +|+++.+++++.+ ++..++.. .+
T Consensus 112 a~~~~~~~~~a~~~l~~~~-----~~~~~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~-~~~~~g~~--~~ 182 (271)
T cd05188 112 AALLPEPLATAYHALRRAG-----VLKPGDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLE-LAKELGAD--HV 182 (271)
T ss_pred hhHhcCHHHHHHHHHHhcc-----CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHH-HHHHhCCc--ee
Confidence 2222 34555555544321 12478999999998899999999999996 5899999988774 44556532 11
Q ss_pred cccc--hHHhh-----cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 298 KPLS--EMLSC-----AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 298 ~~~~--~~~~~-----l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.... +.... -..+|+||++++.+... ...++.+. ++|..+.++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~--~~~~~~l~-----~~G~~v~~~~ 233 (271)
T cd05188 183 IDYKEEDLEEELRLTGGGGADVVIDAVGGPETL--AQALRLLR-----PGGRIVVVGG 233 (271)
T ss_pred ccCCcCCHHHHHHHhcCCCCCEEEECCCCHHHH--HHHHHhcc-----cCCEEEEEcc
Confidence 1111 11111 25799999999873222 23333332 3565555543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.5e-05 Score=85.72 Aligned_cols=94 Identities=17% Similarity=0.168 Sum_probs=70.5
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
..+.|++|+|+|.|.+|+.+++.|+..|+ +|+++++++.++.. +...|. .+. ++.+.++.+|+||.||+..+
T Consensus 250 ~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~-A~~~G~---~~~---~leell~~ADIVI~atGt~~ 321 (476)
T PTZ00075 250 VMIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQ-AAMEGY---QVV---TLEDVVETADIFVTATGNKD 321 (476)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHH-HHhcCc---eec---cHHHHHhcCCEEEECCCccc
Confidence 35799999999999999999999999999 59999998877632 333332 333 34556789999999998654
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEeccCC
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDISVP 351 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDlavP 351 (513)
+|+.+.++.+. ...++++++..
T Consensus 322 -iI~~e~~~~MK-------pGAiLINvGr~ 343 (476)
T PTZ00075 322 -IITLEHMRRMK-------NNAIVGNIGHF 343 (476)
T ss_pred -ccCHHHHhccC-------CCcEEEEcCCC
Confidence 77878887753 22577777644
|
|
| >cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.1e-05 Score=78.23 Aligned_cols=151 Identities=18% Similarity=0.237 Sum_probs=93.9
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccccCCCchHHHHHH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAV 232 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~~~~~Sva~~Av 232 (513)
..|+|+++.+..++++++..-+|+..+.-+ .+....++..--...+.+++.+ ....+...+.+.++.++
T Consensus 54 ~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~----------~g~~~~~~~v~~~~~~~lP~~~-~~~~~~~~~~~~a~~~~ 122 (312)
T cd08269 54 GPGHEGWGRVVALGPGVRGLAVGDRVAGLS----------GGAFAEYDLADADHAVPLPSLL-DGQAFPGEPLGCALNVF 122 (312)
T ss_pred ccceeeEEEEEEECCCCcCCCCCCEEEEec----------CCcceeeEEEchhheEECCCch-hhhHHhhhhHHHHHHHH
Confidence 469999999999999998888999887532 1222211111111223334433 11112123444555554
Q ss_pred HHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-ch----HHhhc
Q 010322 233 ELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL-SE----MLSCA 307 (513)
Q Consensus 233 ~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~-~~----~~~~l 307 (513)
..+ ....+.+|+|.|+|.+|.++++.++..|++.|+++.+++++. +++..+|.. ..+... .+ +.+..
T Consensus 123 ~~~------~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~-~~~~~~g~~-~~~~~~~~~~~~~l~~~~ 194 (312)
T cd08269 123 RRG------WIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARL-ALARELGAT-EVVTDDSEAIVERVRELT 194 (312)
T ss_pred Hhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHHhCCc-eEecCCCcCHHHHHHHHc
Confidence 421 234689999999999999999999999997688899988877 467777642 111111 11 22222
Q ss_pred --CCCcEEEEcCCCCcc
Q 010322 308 --ADADVVFTSTASEAP 322 (513)
Q Consensus 308 --~~aDVVI~AT~s~~~ 322 (513)
.+.|++|+|++.+..
T Consensus 195 ~~~~vd~vld~~g~~~~ 211 (312)
T cd08269 195 GGAGADVVIEAVGHQWP 211 (312)
T ss_pred CCCCCCEEEECCCCHHH
Confidence 369999999876543
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.4e-05 Score=84.28 Aligned_cols=183 Identities=16% Similarity=0.254 Sum_probs=109.7
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHH----------HHHHhHhcCcccchhhHHHHHHHhhCcc----ccc--
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQ----------VVKVGQGVVGFGRNISGLFKHAISVGKR----VRT-- 216 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~----------A~~~a~~~~~~g~~L~~lf~~ai~v~k~----Vr~-- 216 (513)
..|||+++.+.+|++++....+|+..+..++.. -...|...+..|...++.|++++.++.. ++.
T Consensus 90 ~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~lP~~~ 169 (384)
T cd08265 90 VIGHEFSGVVEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEINELR 169 (384)
T ss_pred ccccceEEEEEEECCCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEECCccc
Confidence 469999999999999998899999998743311 0122222222222224556665555542 221
Q ss_pred ---------cccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Q 010322 217 ---------ETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIC 287 (513)
Q Consensus 217 ---------et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la 287 (513)
+......+.+++++++..... .-..|.+|+|.|+|.+|.++++.++..|+.+|+++.++.++. +++
T Consensus 170 ~~~~~~~~~~~a~~~~~~~ta~~al~~~~~----~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~-~~~ 244 (384)
T cd08265 170 EIYSEDKAFEAGALVEPTSVAYNGLFIRGG----GFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERR-NLA 244 (384)
T ss_pred cccccCCCHHHhhhhhHHHHHHHHHHhhcC----CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHH
Confidence 111122345556665422101 234689999999999999999999999997788888888865 788
Q ss_pred HHhCCcceeecccc----h----HHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 288 EELNGVEIIYKPLS----E----MLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 288 ~~~g~~~~~~~~~~----~----~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
+++|.. ..+...+ + +.+.. .+.|+|++|++.+...+ .+.++.+. .+|+.+.++
T Consensus 245 ~~~g~~-~~v~~~~~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~-~~~~~~l~-----~~G~~v~~g 307 (384)
T cd08265 245 KEMGAD-YVFNPTKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATI-PQMEKSIA-----INGKIVYIG 307 (384)
T ss_pred HHcCCC-EEEcccccccccHHHHHHHhcCCCCCCEEEECCCCcHHHH-HHHHHHHH-----cCCEEEEEC
Confidence 888742 1221110 1 22222 36899999988643222 22333322 356555554
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.5e-05 Score=80.28 Aligned_cols=161 Identities=20% Similarity=0.304 Sum_probs=97.8
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch------H---H-HHHHHhHhcCcccc-----hhhHHHHHHHhhCc-----
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ------V---K-QVVKVGQGVVGFGR-----NISGLFKHAISVGK----- 212 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ------v---k-~A~~~a~~~~~~g~-----~L~~lf~~ai~v~k----- 212 (513)
..|+|+++.+.+|+.++....+|+..+... + . +-.+.|.+....|. ..++.|++++.++.
T Consensus 56 ~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~ 135 (339)
T cd08232 56 VLGHEVSGVVEAVGPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVP 135 (339)
T ss_pred ecCccceEEEEeeCCCCCcCCCCCEEEEccCCcCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEE
Confidence 469999999999999998888999987621 1 0 00111221111111 01345555554443
Q ss_pred ---cccccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 010322 213 ---RVRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEE 289 (513)
Q Consensus 213 ---~Vr~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~ 289 (513)
.+..+......+..+++.++.. + ....+.+|+|.|+|.+|.++++.++..|+.+|+++++++++.. ++++
T Consensus 136 iP~~~~~~~aa~~~~~~~a~~~l~~----~--~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~-~~~~ 208 (339)
T cd08232 136 LPDGLSLRRAALAEPLAVALHAVNR----A--GDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLA-VARA 208 (339)
T ss_pred CcCCCCHHHhhhcchHHHHHHHHHh----c--CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH-HHHH
Confidence 2222222222344455555432 2 2347999999999999999999999999967999999887774 6777
Q ss_pred hCCcceeecccch--HHhh---cCCCcEEEEcCCCCcc
Q 010322 290 LNGVEIIYKPLSE--MLSC---AADADVVFTSTASEAP 322 (513)
Q Consensus 290 ~g~~~~~~~~~~~--~~~~---l~~aDVVI~AT~s~~~ 322 (513)
++.. .+.+..+ +... -.+.|+|++|++.+..
T Consensus 209 ~g~~--~vi~~~~~~~~~~~~~~~~vd~vld~~g~~~~ 244 (339)
T cd08232 209 MGAD--ETVNLARDPLAAYAADKGDFDVVFEASGAPAA 244 (339)
T ss_pred cCCC--EEEcCCchhhhhhhccCCCccEEEECCCCHHH
Confidence 7642 2222221 1111 2358999999886433
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=2e-05 Score=79.41 Aligned_cols=129 Identities=19% Similarity=0.382 Sum_probs=97.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-ceeecccchHHhhcCCCcEEEEcC---CC
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-EIIYKPLSEMLSCAADADVVFTST---AS 319 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~~~~~~~~~l~~aDVVI~AT---~s 319 (513)
....+|.|||.|-+|...++.+...|++ |++.++|.+|+..+-..|+.. ........++.+.+..+|+||.|. ++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~-Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGAD-VTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCe-eEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 3456899999999999999999999985 999999999999998888753 222333457888899999999984 55
Q ss_pred Ccc-CCChhhhhcCCchhhhcCCcEEEEeccCCC----------CCCcccccccCeEEEccCCHHHHHHHHH
Q 010322 320 EAP-LFLKDHVQDLPPVEAAVGGLRLFIDISVPR----------NVGSCVADVETARVYNVDDLKEVVAANK 380 (513)
Q Consensus 320 ~~~-vi~~~~l~~~~~~~~~~~g~~viiDlavPr----------didp~v~~l~gv~ly~iDdl~~v~~~~~ 380 (513)
..| +++.++++.+.+ ..++||+++.. ..+......+|+..|.+...+..+..+.
T Consensus 245 kaPkLvt~e~vk~Mkp-------GsVivDVAiDqGGc~Et~~~TTh~~PtY~~~gvvhY~VaNmPgaVprTs 309 (371)
T COG0686 245 KAPKLVTREMVKQMKP-------GSVIVDVAIDQGGCFETSHPTTHDDPTYEVDGVVHYGVANMPGAVPRTS 309 (371)
T ss_pred CCceehhHHHHHhcCC-------CcEEEEEEEcCCCceeccccccCCCCceeecCEEEEecCCCCccccchh
Confidence 556 567777877642 27899997642 2333455678999998888777665543
|
|
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.6e-05 Score=79.48 Aligned_cols=179 Identities=19% Similarity=0.251 Sum_probs=105.7
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHH----------HHHHHhHhcCcccc-hhhHHHHHHHhh--------Ccc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVK----------QVVKVGQGVVGFGR-NISGLFKHAISV--------GKR 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk----------~A~~~a~~~~~~g~-~L~~lf~~ai~v--------~k~ 213 (513)
..|+|+++.+.+++.++....+|+..+..... +.+..|.+....+. ...+.|++++.+ ++.
T Consensus 57 ~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~ 136 (343)
T cd05285 57 VLGHESAGTVVAVGSGVTHLKVGDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDN 136 (343)
T ss_pred ccCcceeEEEEeeCCCCCCCCCCCEEEEccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEECcCC
Confidence 46999999999999999888899988752110 11222221111000 012344444433 333
Q ss_pred ccccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc
Q 010322 214 VRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV 293 (513)
Q Consensus 214 Vr~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~ 293 (513)
+..+......+.+++++++.++ ...+|.+|+|.|+|.+|.++++.++..|++.|+++.++.++. .+..+++..
T Consensus 137 ~~~~~aa~~~~~~~a~~~~~~~------~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~-~~~~~~g~~ 209 (343)
T cd05285 137 VSLEEGALVEPLSVGVHACRRA------GVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRL-EFAKELGAT 209 (343)
T ss_pred CCHHHhhhhhHHHHHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHHcCCc
Confidence 3322222223556666654332 234789999999999999999999999987688888888877 455666642
Q ss_pred ceeecccc---------hHHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 294 EIIYKPLS---------EMLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 294 ~~~~~~~~---------~~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
.+.... .+.... .++|+||+|+++...+ ...++.+. .+|..+.++
T Consensus 210 --~vi~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~--~~~~~~l~-----~~G~~v~~g 265 (343)
T cd05285 210 --HTVNVRTEDTPESAEKIAELLGGKGPDVVIECTGAESCI--QTAIYATR-----PGGTVVLVG 265 (343)
T ss_pred --EEeccccccchhHHHHHHHHhCCCCCCEEEECCCCHHHH--HHHHHHhh-----cCCEEEEEc
Confidence 121111 122333 3489999998875332 33444432 346555554
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.7e-05 Score=76.87 Aligned_cols=161 Identities=13% Similarity=0.228 Sum_probs=98.9
Q ss_pred hcCCceeeeeeeeccCCCC-cccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCc--------cccccccc--c
Q 010322 153 LYNKDATQHLFEVSAGLDS-LVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGK--------RVRTETNI--A 221 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS-~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~Vr~et~i--~ 221 (513)
..|||+++.+.+++++++. +.+|+..+... + .++.|++++.++. .+..+... .
T Consensus 63 v~G~e~~G~V~~vG~~v~~~~~vGd~V~~~~--------------~--~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~ 126 (324)
T cd08291 63 PPGFEGSGTVVAAGGGPLAQSLIGKRVAFLA--------------G--SYGTYAEYAVADAQQCLPLPDGVSFEQGASSF 126 (324)
T ss_pred CCCcceEEEEEEECCCccccCCCCCEEEecC--------------C--CCCcchheeeecHHHeEECCCCCCHHHHhhhc
Confidence 5799999999999999986 88999887521 0 0355555555543 22221111 1
Q ss_pred CCCchHHHHHHHHHHhhCCCCCCCCCeEEEE--cccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecc
Q 010322 222 AGAVSVSSAAVELALMKLPESSHATARMLVI--GAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKP 299 (513)
Q Consensus 222 ~~~~Sva~~Av~la~~~~~~~~l~g~~VlVI--GaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~ 299 (513)
..+.+ ++.++..+ ...+.+++|+ |+|.+|.++++.++..|++ |+++.+++++. ++++++|.. ..+..
T Consensus 127 ~~~~t-a~~~~~~~-------~~~~~~vlv~~~g~g~vG~~a~q~a~~~G~~-vi~~~~~~~~~-~~~~~~g~~-~~i~~ 195 (324)
T cd08291 127 VNPLT-ALGMLETA-------REEGAKAVVHTAAASALGRMLVRLCKADGIK-VINIVRRKEQV-DLLKKIGAE-YVLNS 195 (324)
T ss_pred ccHHH-HHHHHHhh-------ccCCCcEEEEccCccHHHHHHHHHHHHcCCE-EEEEeCCHHHH-HHHHHcCCc-EEEEC
Confidence 22221 23222221 2356677775 7799999999999999995 88889998887 556677742 12221
Q ss_pred c-chH----Hhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 300 L-SEM----LSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 300 ~-~~~----~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
. .+. .+.. .++|+||+|++.... ...+..+. ++|+.+.++.
T Consensus 196 ~~~~~~~~v~~~~~~~~~d~vid~~g~~~~---~~~~~~l~-----~~G~~v~~g~ 243 (324)
T cd08291 196 SDPDFLEDLKELIAKLNATIFFDAVGGGLT---GQILLAMP-----YGSTLYVYGY 243 (324)
T ss_pred CCccHHHHHHHHhCCCCCcEEEECCCcHHH---HHHHHhhC-----CCCEEEEEEe
Confidence 1 122 2222 368999999987543 23344432 3676777764
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >PRK05396 tdh L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.9e-05 Score=80.08 Aligned_cols=180 Identities=13% Similarity=0.201 Sum_probs=106.8
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCcccchhhHHHHHHHhhCcc--------c
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVGFGRNISGLFKHAISVGKR--------V 214 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~~g~~L~~lf~~ai~v~k~--------V 214 (513)
..|+|+++.+..|++++..+.+|+..+..+. .+.++.|......+...++.|++++.++.. +
T Consensus 60 ~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~l 139 (341)
T PRK05396 60 VVGHEFVGEVVEVGSEVTGFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKIPDDI 139 (341)
T ss_pred ccceeeEEEEEEeCCCCCcCCCCCEEEECCCCCCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEECcCCC
Confidence 4799999999999999998999998876421 112233333222222234556655555442 2
Q ss_pred cccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcc
Q 010322 215 RTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVE 294 (513)
Q Consensus 215 r~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~ 294 (513)
..+......+.++++.++. . ....|++|+|.|+|.+|..+++.++..|+++|+++++++++. +++.++|..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~---~----~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~-~~~~~lg~~- 210 (341)
T PRK05396 140 PDDLAAIFDPFGNAVHTAL---S----FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRL-ELARKMGAT- 210 (341)
T ss_pred CHHHhHhhhHHHHHHHHHH---c----CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHhCCc-
Confidence 2112211223333333221 1 124789999999999999999999999997788888888776 666777742
Q ss_pred eeeccc-ch----HHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 295 IIYKPL-SE----MLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 295 ~~~~~~-~~----~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
..+... .+ +.... .++|+|++|+++...+ ...+..+. ++|..+.++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~--~~~~~~l~-----~~G~~v~~g~ 264 (341)
T PRK05396 211 RAVNVAKEDLRDVMAELGMTEGFDVGLEMSGAPSAF--RQMLDNMN-----HGGRIAMLGI 264 (341)
T ss_pred EEecCccccHHHHHHHhcCCCCCCEEEECCCCHHHH--HHHHHHHh-----cCCEEEEEec
Confidence 112111 11 21222 4799999998875432 23333332 3565666653
|
|
| >cd05284 arabinose_DH_like D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.6e-05 Score=79.09 Aligned_cols=183 Identities=22% Similarity=0.251 Sum_probs=108.3
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCcccchhhHHHHHHHhhCcc----cccc
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVGFGRNISGLFKHAISVGKR----VRTE 217 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~~g~~L~~lf~~ai~v~k~----Vr~e 217 (513)
...|+|+++.+.++++++....+|+..+.-.. .+..+.|.+....|...++.|++++.++.. ++..
T Consensus 59 ~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~P~~ 138 (340)
T cd05284 59 FTLGHENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKLPRG 138 (340)
T ss_pred eecccceeEEEEEeCCCCCcCcCCCEEEEcCCCCCCCChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEECCCC
Confidence 35799999999999999988999999885321 111223333323333335666666555442 2211
Q ss_pred ----cccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC
Q 010322 218 ----TNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG 292 (513)
Q Consensus 218 ----t~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~ 292 (513)
.... .....++++++..... ....+.+|+|.|+|.+|.++++.++..|..+|+++.+++++.+. .+++|.
T Consensus 139 ls~~~aa~l~~~~~ta~~~l~~~~~----~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~-~~~~g~ 213 (340)
T cd05284 139 LDPVEAAPLADAGLTAYHAVKKALP----YLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKL-AERLGA 213 (340)
T ss_pred CCHHHhhhhcchHHHHHHHHHHhcc----cCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHH-HHHhCC
Confidence 1111 1123344555432211 12368999999999999999999999984358888899888754 467774
Q ss_pred cceeecccc----hHHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 293 VEIIYKPLS----EMLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 293 ~~~~~~~~~----~~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
. ..+...+ .+.+.. .++|+|++|++.+..+ .+.++.+. .+|..+.++
T Consensus 214 ~-~~~~~~~~~~~~i~~~~~~~~~dvvld~~g~~~~~--~~~~~~l~-----~~g~~i~~g 266 (340)
T cd05284 214 D-HVLNASDDVVEEVRELTGGRGADAVIDFVGSDETL--ALAAKLLA-----KGGRYVIVG 266 (340)
T ss_pred c-EEEcCCccHHHHHHHHhCCCCCCEEEEcCCCHHHH--HHHHHHhh-----cCCEEEEEc
Confidence 2 1221111 122222 3689999999974332 33444432 356555554
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.9e-05 Score=79.57 Aligned_cols=186 Identities=16% Similarity=0.246 Sum_probs=106.3
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhc-----hHH----HHHHHhHhcCc---cc--------------------chh
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILA-----QVK----QVVKVGQGVVG---FG--------------------RNI 200 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlg-----Qvk----~A~~~a~~~~~---~g--------------------~~L 200 (513)
..|+|+++.+.+|+++++.+.+|++.... ++. +..+.|.+... .| ...
T Consensus 58 v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (365)
T cd08278 58 VLGHEGAGVVEAVGSAVTGLKPGDHVVLSFASCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFG 137 (365)
T ss_pred ccccceeEEEEEeCCCcccCCCCCEEEEcccCCCCChHHhCCCcccccCcccccccccccCCcccccccCCccccccccc
Confidence 46999999999999999989999988751 110 11111211100 00 011
Q ss_pred hHHHHHHHhhCcc----ccccccc-cCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEE
Q 010322 201 SGLFKHAISVGKR----VRTETNI-AAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVV 275 (513)
Q Consensus 201 ~~lf~~ai~v~k~----Vr~et~i-~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v 275 (513)
.+.|++++.++.. ++..... ...+++++++....+..... ....+++|+|.|+|.+|.++++.++..|++.|++
T Consensus 138 ~g~~~~y~~v~~~~~~~iP~~~s~~~a~~l~~~~~ta~~~~~~~~-~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~ 216 (365)
T cd08278 138 QSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAVLNVL-KPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIA 216 (365)
T ss_pred ccceeeEEEecchhEEECCCCCCHHHhhhhcchhhhhhHHHhhhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence 3556666655542 2211110 11233333332111111111 1236899999999999999999999999987999
Q ss_pred EeCCHHHHHHHHHHhCCcceeecccc-h----HHhh-cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 276 VNRSEERVAAICEELNGVEIIYKPLS-E----MLSC-AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 276 ~nRs~~ra~~la~~~g~~~~~~~~~~-~----~~~~-l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+++++++. .++++++.. ..+...+ + +.+. -.++|+|++|++++..+ ...++.+. .+|..+.++.
T Consensus 217 ~~~~~~k~-~~~~~~g~~-~~i~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~--~~~~~~l~-----~~G~~v~~g~ 286 (365)
T cd08278 217 VDIVDSRL-ELAKELGAT-HVINPKEEDLVAAIREITGGGVDYALDTTGVPAVI--EQAVDALA-----PRGTLALVGA 286 (365)
T ss_pred EeCCHHHH-HHHHHcCCc-EEecCCCcCHHHHHHHHhCCCCcEEEECCCCcHHH--HHHHHHhc-----cCCEEEEeCc
Confidence 99998887 567777642 1121111 1 1111 14799999999875443 34444432 3565665553
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.7e-05 Score=80.55 Aligned_cols=170 Identities=15% Similarity=0.188 Sum_probs=100.1
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch------HH----HHHHHhHhcCcccchhhHHHHHHHhhCc--------cc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ------VK----QVVKVGQGVVGFGRNISGLFKHAISVGK--------RV 214 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ------vk----~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~V 214 (513)
..|+|+++.+.++++++++..+|+..+.-. +. .-++.|......|....+.+++++.++. .+
T Consensus 69 ~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~ 148 (350)
T cd08240 69 VLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDPGGL 148 (350)
T ss_pred ccccceeEEEEeeCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeCCCCC
Confidence 469999999999999999999999886521 11 1111222211112112344444444433 22
Q ss_pred ccccccc-CCCchHHHHHHHHHHhhCCCCCC-CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC
Q 010322 215 RTETNIA-AGAVSVSSAAVELALMKLPESSH-ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG 292 (513)
Q Consensus 215 r~et~i~-~~~~Sva~~Av~la~~~~~~~~l-~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~ 292 (513)
....... .-+...+++++..+ ..+ .+.+|+|.|+|.+|.++++.++..|++.|+++.++.++. .+++++|.
T Consensus 149 s~~~aa~l~~~~~tA~~~~~~~------~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~-~~~~~~g~ 221 (350)
T cd08240 149 DPALAATLACSGLTAYSAVKKL------MPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKL-EAAKAAGA 221 (350)
T ss_pred CHHHeehhhchhhhHHHHHHhc------ccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHhCC
Confidence 2222111 11223445554332 123 689999999999999999999999997798999998887 44567774
Q ss_pred cceeecccc-----hHHhhcC-CCcEEEEcCCCCccCCChhhhhcC
Q 010322 293 VEIIYKPLS-----EMLSCAA-DADVVFTSTASEAPLFLKDHVQDL 332 (513)
Q Consensus 293 ~~~~~~~~~-----~~~~~l~-~aDVVI~AT~s~~~vi~~~~l~~~ 332 (513)
. ..+...+ .+.+... ++|+||++++++..+ ...+..+
T Consensus 222 ~-~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~--~~~~~~l 264 (350)
T cd08240 222 D-VVVNGSDPDAAKRIIKAAGGGVDAVIDFVNNSATA--SLAFDIL 264 (350)
T ss_pred c-EEecCCCccHHHHHHHHhCCCCcEEEECCCCHHHH--HHHHHHh
Confidence 2 1221111 1222222 689999999865433 3344443
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH) | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.8e-05 Score=81.64 Aligned_cols=160 Identities=19% Similarity=0.271 Sum_probs=99.7
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhch------HH----HHHHHhHhc------Ccccc----hhhHHHHHHHhhC
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQ------VK----QVVKVGQGV------VGFGR----NISGLFKHAISVG 211 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQ------vk----~A~~~a~~~------~~~g~----~L~~lf~~ai~v~ 211 (513)
...|||+++.+..|+.++..+.+|+..+... .. ..+..|... +..|. ..++.|++++.++
T Consensus 55 ~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~ 134 (375)
T cd08282 55 LVLGHEAMGEVEEVGSAVESLKVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVP 134 (375)
T ss_pred ceeccccEEEEEEeCCCCCcCCCCCEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEee
Confidence 3579999999999999999899999987621 11 111112111 00011 1235566666555
Q ss_pred c----------ccccc----ccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEe
Q 010322 212 K----------RVRTE----TNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVN 277 (513)
Q Consensus 212 k----------~Vr~e----t~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~n 277 (513)
. .+..+ ......+..++++++..+ ....|.+|+|.|+|.+|.++++.++..|+.+|++++
T Consensus 135 ~~~~~~~~lP~~~~~~~~~~~a~~~~~~~ta~~a~~~~------~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~ 208 (375)
T cd08282 135 YADFNLLKLPDRDGAKEKDDYLMLSDIFPTGWHGLELA------GVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVD 208 (375)
T ss_pred cccCcEEECCCCCChhhhhheeeecchHHHHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence 3 12121 111223456667765433 234689999999999999999999999987788899
Q ss_pred CCHHHHHHHHHHhCCcceeeccc-chH----Hhhc-CCCcEEEEcCCCC
Q 010322 278 RSEERVAAICEELNGVEIIYKPL-SEM----LSCA-ADADVVFTSTASE 320 (513)
Q Consensus 278 Rs~~ra~~la~~~g~~~~~~~~~-~~~----~~~l-~~aDVVI~AT~s~ 320 (513)
++.++. +++.++|.. .+... .+. .+.. .++|+|++|++.+
T Consensus 209 ~~~~~~-~~~~~~g~~--~v~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 254 (375)
T cd08282 209 HVPERL-DLAESIGAI--PIDFSDGDPVEQILGLEPGGVDRAVDCVGYE 254 (375)
T ss_pred CCHHHH-HHHHHcCCe--EeccCcccHHHHHHHhhCCCCCEEEECCCCc
Confidence 998876 666677741 12111 111 1111 3689999999875
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.7e-05 Score=81.46 Aligned_cols=96 Identities=18% Similarity=0.248 Sum_probs=69.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH--------HHhCCcceeecccchHHhhcCCCcEEE
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIC--------EELNGVEIIYKPLSEMLSCAADADVVF 314 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la--------~~~g~~~~~~~~~~~~~~~l~~aDVVI 314 (513)
.+.|++|+|||.|.||+.+++.|...|+ +|++++|+..+..... ..+.. ......++.+.+..+|+|+
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~ell~~aDiVv 231 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSWTSEPEDGLLIPNGDVDDLVD---EKGGHEDIYEFAGEADIVV 231 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCChhhhhhhcccccccccccc---ccCcccCHHHHHhhCCEEE
Confidence 5789999999999999999999999999 5999999743221100 00000 0114457788889999999
Q ss_pred EcCCCC---ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 315 TSTASE---APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 315 ~AT~s~---~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
.+++.. ..+|+.+.+..+. ...++|+++
T Consensus 232 l~lPlt~~T~~li~~~~l~~Mk-------~ga~lINva 262 (347)
T PLN02928 232 LCCTLTKETAGIVNDEFLSSMK-------KGALLVNIA 262 (347)
T ss_pred ECCCCChHhhcccCHHHHhcCC-------CCeEEEECC
Confidence 997754 4578888887764 226788775
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.3e-05 Score=79.48 Aligned_cols=91 Identities=12% Similarity=0.211 Sum_probs=67.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc-
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA- 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~- 321 (513)
.+.|++|+|||.|.||+.+++.|...|. +|.+++|+.... ....++. . +.++.+.+..+|+|+.+++.+.
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~~~~~~~---~---~~~l~ell~~aDiV~l~lP~t~~ 217 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKPE--AEKELGA---E---YRPLEELLRESDFVSLHVPLTKE 217 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCChh--hHHHcCC---E---ecCHHHHHhhCCEEEEeCCCChH
Confidence 5789999999999999999999999998 599999986433 2233331 2 2356677889999999998753
Q ss_pred --cCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 322 --PLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 322 --~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
.+++.+.+..+. ...++|+++
T Consensus 218 T~~~i~~~~~~~mk-------~ga~lIN~a 240 (333)
T PRK13243 218 TYHMINEERLKLMK-------PTAILVNTA 240 (333)
T ss_pred HhhccCHHHHhcCC-------CCeEEEECc
Confidence 567777666653 226777765
|
|
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.2e-05 Score=79.10 Aligned_cols=177 Identities=14% Similarity=0.186 Sum_probs=106.6
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH-----------HHHHHHhHhcCcccchhhHHHHHHHhhCcc----cccc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV-----------KQVVKVGQGVVGFGRNISGLFKHAISVGKR----VRTE 217 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv-----------k~A~~~a~~~~~~g~~L~~lf~~ai~v~k~----Vr~e 217 (513)
..|+|+++.+..++++++...+|+..+...+ ....+.|......|...++.|.+++.++.. ++..
T Consensus 61 ~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~ 140 (329)
T cd08298 61 IPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPIPED 140 (329)
T ss_pred cccccccEEEEEECCCCCCCcCCCEEEEeccCCCCCCChhHhCcChhhCCCccccccccCCceEEEEEecchhEEECCCC
Confidence 5799999999999999988888998865211 112233433333333234555555555442 1111
Q ss_pred cc-----ccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC
Q 010322 218 TN-----IAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG 292 (513)
Q Consensus 218 t~-----i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~ 292 (513)
.. ....+...++++++.+ ....+.+|+|.|+|.+|.+++..++..|+ +|+++.++.++. ++++++|.
T Consensus 141 ~~~~~~~~~~~~~~ta~~~~~~~------~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~-~~~~~~g~ 212 (329)
T cd08298 141 YDDEEAAPLLCAGIIGYRALKLA------GLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQ-ELARELGA 212 (329)
T ss_pred CCHHHhhHhhhhhHHHHHHHHhh------CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHH-HHHHHhCC
Confidence 11 1112333445554332 23468899999999999999999999998 588888888777 55577774
Q ss_pred cceeecccchHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 293 VEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 293 ~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
...+ ..... .-.+.|++|++++.+..+ .+.++.+. .+|..+.++.
T Consensus 213 -~~~~-~~~~~--~~~~vD~vi~~~~~~~~~--~~~~~~l~-----~~G~~v~~g~ 257 (329)
T cd08298 213 -DWAG-DSDDL--PPEPLDAAIIFAPVGALV--PAALRAVK-----KGGRVVLAGI 257 (329)
T ss_pred -cEEe-ccCcc--CCCcccEEEEcCCcHHHH--HHHHHHhh-----cCCEEEEEcC
Confidence 2112 11211 114689999988765432 34444433 3566666553
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.6e-05 Score=78.80 Aligned_cols=92 Identities=13% Similarity=0.221 Sum_probs=64.4
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC---CeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGC---TKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPL 323 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~---~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~v 323 (513)
.+|.|||+|.||..++..|...|. .+|+++||++++++.+.+++|. .. ..+..+.+..+|+||.|++ |..+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~---~~--~~~~~e~~~~aDiIiLavk-P~~~ 76 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGI---TI--TTNNNEVANSADILILSIK-PDLY 76 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCc---EE--eCCcHHHHhhCCEEEEEeC-hHHH
Confidence 579999999999999999998874 4699999999998887776652 22 2334445678999999999 4333
Q ss_pred CChhhhhcCCchhhhcCCcEEEEecc
Q 010322 324 FLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 324 i~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
.+.++.+.+. ..+..++||+.
T Consensus 77 --~~vl~~l~~~---~~~~~lvISi~ 97 (272)
T PRK12491 77 --SSVINQIKDQ---IKNDVIVVTIA 97 (272)
T ss_pred --HHHHHHHHHh---hcCCcEEEEeC
Confidence 2333322110 11236888884
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.2e-05 Score=76.57 Aligned_cols=179 Identities=18% Similarity=0.242 Sum_probs=103.6
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHH----------HHHHhHhcCcccchhhHHHHHHHhh--------Cccc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQ----------VVKVGQGVVGFGRNISGLFKHAISV--------GKRV 214 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~----------A~~~a~~~~~~g~~L~~lf~~ai~v--------~k~V 214 (513)
..|+|+++.+..++.+++.+-+|+..+....-. .-..+...+..|...++.+++++.+ ++.+
T Consensus 55 ~~g~~~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~ 134 (334)
T cd08234 55 VPGHEFAGVVVAVGSKVTGFKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPDNL 134 (334)
T ss_pred ccccceEEEEEEeCCCCCCCCCCCEEEEcCCcCCCCCccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEECcCCC
Confidence 579999999999999998889999987633210 0011111111111123344443333 3333
Q ss_pred cccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcc
Q 010322 215 RTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVE 294 (513)
Q Consensus 215 r~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~ 294 (513)
.........+...++.++..+ .-..|.+|+|+|+|.+|.++++.++..|++.|+++++++++... +.+++..
T Consensus 135 ~~~~aa~~~~~~~a~~~l~~~------~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~-~~~~g~~- 206 (334)
T cd08234 135 SFEEAALAEPLSCAVHGLDLL------GIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLEL-AKKLGAT- 206 (334)
T ss_pred CHHHHhhhhHHHHHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH-HHHhCCe-
Confidence 222222223333444443222 23468899999999999999999999998778899999888744 4666642
Q ss_pred eeecccc--hHH--h--hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 295 IIYKPLS--EML--S--CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 295 ~~~~~~~--~~~--~--~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
.+.... +.. . .-.++|++|+|++++..+ ...++.+. ++|..+.++
T Consensus 207 -~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~~~~--~~~~~~l~-----~~G~~v~~g 257 (334)
T cd08234 207 -ETVDPSREDPEAQKEDNPYGFDVVIEATGVPKTL--EQAIEYAR-----RGGTVLVFG 257 (334)
T ss_pred -EEecCCCCCHHHHHHhcCCCCcEEEECCCChHHH--HHHHHHHh-----cCCEEEEEe
Confidence 222221 111 1 124699999999865432 33343332 345555554
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2 | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.6e-05 Score=78.39 Aligned_cols=171 Identities=16% Similarity=0.213 Sum_probs=101.5
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCcccc----hhhHHHHHHHhhC-------
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVGFGR----NISGLFKHAISVG------- 211 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~~g~----~L~~lf~~ai~v~------- 211 (513)
..|+|+++.+.+|+++++...+|+..+.... ......|...+.+|. ..++.|++++.++
T Consensus 56 ~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~ 135 (344)
T cd08284 56 VLGHEFVGEVVEVGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLL 135 (344)
T ss_pred ccccceEEEEEeeCCCccccCCCCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceE
Confidence 5799999999999999999999998876321 111112211111110 0134454444443
Q ss_pred ---ccccccccc-cCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Q 010322 212 ---KRVRTETNI-AAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIC 287 (513)
Q Consensus 212 ---k~Vr~et~i-~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la 287 (513)
..+..+... ...+..++++++..+ ....|.+|+|.|+|.+|.++++.++..|+.+|++++++.++. .++
T Consensus 136 ~~p~~l~~~~a~~l~~~~~ta~~~~~~~------~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~-~~~ 208 (344)
T cd08284 136 KLPDGLSDEAALLLGDILPTGYFGAKRA------QVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERL-ERA 208 (344)
T ss_pred ECCCCCCHHHhhhhcCchHHHHhhhHhc------CCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHH-HHH
Confidence 222211111 123455666665432 234689999999999999999999999986688888887776 566
Q ss_pred HHhCCcceeeccc---chHHhhc--CCCcEEEEcCCCCccCCChhhhhcC
Q 010322 288 EELNGVEIIYKPL---SEMLSCA--ADADVVFTSTASEAPLFLKDHVQDL 332 (513)
Q Consensus 288 ~~~g~~~~~~~~~---~~~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~ 332 (513)
.++|...+..... ..+.+.. .+.|++|+|++.+..+ ...+..+
T Consensus 209 ~~~g~~~~~~~~~~~~~~l~~~~~~~~~dvvid~~~~~~~~--~~~~~~l 256 (344)
T cd08284 209 AALGAEPINFEDAEPVERVREATEGRGADVVLEAVGGAAAL--DLAFDLV 256 (344)
T ss_pred HHhCCeEEecCCcCHHHHHHHHhCCCCCCEEEECCCCHHHH--HHHHHhc
Confidence 6777421111111 1122222 4699999999875443 3344443
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.3e-05 Score=77.86 Aligned_cols=92 Identities=21% Similarity=0.316 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEccc-HHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHh
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGAG-KMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLS 305 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGaG-~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~ 305 (513)
++.+.+++.+.. + .++.|++|+|||.| -||+.++.+|...|+. |++++++.. ++.+
T Consensus 142 Tp~aii~lL~~~-~-i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gat-Vtv~~~~t~--------------------~l~e 198 (301)
T PRK14194 142 TPSGCLRLLEDT-C-GDLTGKHAVVIGRSNIVGKPMAALLLQAHCS-VTVVHSRST--------------------DAKA 198 (301)
T ss_pred cHHHHHHHHHHh-C-CCCCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEECCCCC--------------------CHHH
Confidence 344555666542 2 47899999999995 9999999999999985 999987532 2334
Q ss_pred hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 306 CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
..+.||+||+|+|.+.. +...+++ .| .++||+++-+
T Consensus 199 ~~~~ADIVIsavg~~~~-v~~~~ik---------~G-aiVIDvgin~ 234 (301)
T PRK14194 199 LCRQADIVVAAVGRPRL-IDADWLK---------PG-AVVIDVGINR 234 (301)
T ss_pred HHhcCCEEEEecCChhc-ccHhhcc---------CC-cEEEEecccc
Confidence 45689999999999854 4555542 13 7899998643
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.9e-05 Score=81.03 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=67.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.+.|++|+|+|+|.+|+.+++.++..|+ +|+++++++.++. .+...|. .+.+ +.+.+..+|+||+||+..+
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~-eA~~~G~---~vv~---leEal~~ADVVI~tTGt~~- 321 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICAL-QALMEGY---QVLT---LEDVVSEADIFVTTTGNKD- 321 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhH-HHHhcCC---eecc---HHHHHhhCCEEEECCCCcc-
Confidence 3689999999999999999999999999 5999999987753 3434442 2222 4456778999999988764
Q ss_pred CCChhhhhcCCchhhhcCCcEEEEeccCC
Q 010322 323 LFLKDHVQDLPPVEAAVGGLRLFIDISVP 351 (513)
Q Consensus 323 vi~~~~l~~~~~~~~~~~g~~viiDlavP 351 (513)
++..+.+..+.+ + .+++.++.+
T Consensus 322 vI~~e~L~~MK~-----G--AiLiNvGr~ 343 (477)
T PLN02494 322 IIMVDHMRKMKN-----N--AIVCNIGHF 343 (477)
T ss_pred chHHHHHhcCCC-----C--CEEEEcCCC
Confidence 445677776531 2 455666553
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.6e-05 Score=74.42 Aligned_cols=76 Identities=22% Similarity=0.281 Sum_probs=55.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHH-HHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEE-RVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~-ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
++.|++|+|||+|.+|...++.|...|+ +|+|++++.. ...+++.. +. +.+....-....+.++|+||.||+.+.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~~~~~l~~l~~~-~~--i~~~~~~~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPELTENLVKLVEE-GK--IRWKQKEFEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCCCHHHHHHHhC-CC--EEEEecCCChhhcCCceEEEEcCCCHH
Confidence 5789999999999999999999999997 5999998753 33444443 21 233222112345789999999999975
Q ss_pred c
Q 010322 322 P 322 (513)
Q Consensus 322 ~ 322 (513)
-
T Consensus 83 l 83 (202)
T PRK06718 83 V 83 (202)
T ss_pred H
Confidence 4
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00012 Score=66.79 Aligned_cols=97 Identities=23% Similarity=0.241 Sum_probs=70.3
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhh
Q 010322 228 SSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSC 306 (513)
Q Consensus 228 a~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~ 306 (513)
+.+.+++.+. ++ -++.|++|+|+|. +..|+.++..|...|+. |++++++-. ++.+.
T Consensus 12 ~~a~~~ll~~-~~-~~~~gk~v~VvGrs~~vG~pla~lL~~~gat-V~~~~~~t~--------------------~l~~~ 68 (140)
T cd05212 12 AKAVKELLNK-EG-VRLDGKKVLVVGRSGIVGAPLQCLLQRDGAT-VYSCDWKTI--------------------QLQSK 68 (140)
T ss_pred HHHHHHHHHH-cC-CCCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEeCCCCc--------------------CHHHH
Confidence 3344455543 33 4789999999999 77899999999989985 888875421 23445
Q ss_pred cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCccc
Q 010322 307 AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCV 358 (513)
Q Consensus 307 l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v 358 (513)
++.||+||+||+++ ++|+.++++. | .+++|.+..+..++.+
T Consensus 69 v~~ADIVvsAtg~~-~~i~~~~ikp---------G-a~Vidvg~~~~~~~~~ 109 (140)
T cd05212 69 VHDADVVVVGSPKP-EKVPTEWIKP---------G-ATVINCSPTKLSGDDV 109 (140)
T ss_pred HhhCCEEEEecCCC-CccCHHHcCC---------C-CEEEEcCCCcccchhh
Confidence 67899999999999 7888888753 3 5677988766333333
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.9e-05 Score=80.72 Aligned_cols=75 Identities=28% Similarity=0.488 Sum_probs=59.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC-c---ceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG-V---EIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~-~---~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
++|+|||+|.+|+.++..|...|..+|++.+||.+++.+++...+. . .+.+...+.+.+.+.+.|+||+|.+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~ 80 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV 80 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh
Confidence 6899999999999999999999977899999999999887766421 1 1222233456678899999999987754
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.1e-05 Score=80.14 Aligned_cols=159 Identities=15% Similarity=0.209 Sum_probs=98.4
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchHH----------HHHHHhHhc---------------Ccccc-----hhh
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQVK----------QVVKVGQGV---------------VGFGR-----NIS 201 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk----------~A~~~a~~~---------------~~~g~-----~L~ 201 (513)
...|+|+++.+.+|++++....+|+..+..... +-++.|... +..|. ..+
T Consensus 56 ~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (386)
T cd08283 56 DILGHEFMGVVEEVGPEVRNLKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYA 135 (386)
T ss_pred ccccccceEEEEEeCCCCCCCCCCCEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccccccCCCC
Confidence 458999999999999999989999988764321 011112110 11110 123
Q ss_pred HHHHHHHhhCcc----------cccccccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCC
Q 010322 202 GLFKHAISVGKR----------VRTETNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGC 270 (513)
Q Consensus 202 ~lf~~ai~v~k~----------Vr~et~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~ 270 (513)
+.|.+++.++.. +..+.... ..+.+++++++..+ ....|.+|+|+|+|.+|.+++..+...|+
T Consensus 136 g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~------~~~~g~~VlV~g~G~vG~~~~~la~~~g~ 209 (386)
T cd08283 136 GGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHAAELA------EVKPGDTVAVWGCGPVGLFAARSAKLLGA 209 (386)
T ss_pred CeeEEEEEcccccCeEEECCCCCCHHHHhhhccchhhhHHHHhhc------cCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 455555554432 22222221 23456677765432 12468899999999999999999999998
Q ss_pred CeEEEEeCCHHHHHHHHHHhCCcceeecccc---hHH----hhc--CCCcEEEEcCCC
Q 010322 271 TKMVVVNRSEERVAAICEELNGVEIIYKPLS---EML----SCA--ADADVVFTSTAS 319 (513)
Q Consensus 271 ~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~---~~~----~~l--~~aDVVI~AT~s 319 (513)
.+|+++++++++. ++++++++. .+.... +.. +.. .+.|+||+|++.
T Consensus 210 ~~vi~~~~~~~~~-~~~~~~~~~--~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg~ 264 (386)
T cd08283 210 ERVIAIDRVPERL-EMARSHLGA--ETINFEEVDDVVEALRELTGGRGPDVCIDAVGM 264 (386)
T ss_pred CEEEEEcCCHHHH-HHHHHcCCc--EEEcCCcchHHHHHHHHHcCCCCCCEEEECCCC
Confidence 7799999998887 556666332 222221 122 222 268999999875
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00014 Score=74.98 Aligned_cols=161 Identities=24% Similarity=0.315 Sum_probs=98.8
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhc---------hHHHHH-HHhHhcCcccchhhHHHHHHHhhCc--------cc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILA---------QVKQVV-KVGQGVVGFGRNISGLFKHAISVGK--------RV 214 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlg---------Qvk~A~-~~a~~~~~~g~~L~~lf~~ai~v~k--------~V 214 (513)
..|+|+++.+..+++++..+-+|+..+.- +++..+ ..+...+..|...++.|+++..++. .+
T Consensus 55 ~~g~~~~G~V~~~g~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP~~~ 134 (343)
T cd08236 55 VLGHEFSGTVEEVGSGVDDLAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIPDHV 134 (343)
T ss_pred ccCcceEEEEEEECCCCCcCCCCCEEEEcCCCCCCCChhHHCcChhhCCCcceEecccCCcccceEEechHHeEECcCCC
Confidence 46999999999999999888999987652 111111 1111111122222345555444443 22
Q ss_pred cccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcc
Q 010322 215 RTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVE 294 (513)
Q Consensus 215 r~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~ 294 (513)
..+.+....+..+++.++..+ ....+.+|+|.|+|.+|.++++.++..|+..|+++.++.++.+. ...++..
T Consensus 135 ~~~~aa~~~~~~ta~~~l~~~------~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~-l~~~g~~- 206 (343)
T cd08236 135 DYEEAAMIEPAAVALHAVRLA------GITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAV-ARELGAD- 206 (343)
T ss_pred CHHHHHhcchHHHHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH-HHHcCCC-
Confidence 222222224555666665432 12368899999999999999999999999769999998887754 4566632
Q ss_pred eeeccc-----chHHhhcC--CCcEEEEcCCCCcc
Q 010322 295 IIYKPL-----SEMLSCAA--DADVVFTSTASEAP 322 (513)
Q Consensus 295 ~~~~~~-----~~~~~~l~--~aDVVI~AT~s~~~ 322 (513)
.+... ..+..... ++|++++|++....
T Consensus 207 -~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~ 240 (343)
T cd08236 207 -DTINPKEEDVEKVRELTEGRGADLVIEAAGSPAT 240 (343)
T ss_pred -EEecCccccHHHHHHHhCCCCCCEEEECCCCHHH
Confidence 22221 12222332 49999999876533
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=6.1e-05 Score=77.34 Aligned_cols=179 Identities=15% Similarity=0.246 Sum_probs=104.6
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH-----------HHHHHHhHhcCcccchhhHHHHHHHhhCc--------c
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV-----------KQVVKVGQGVVGFGRNISGLFKHAISVGK--------R 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv-----------k~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~ 213 (513)
..|+|+++.+.++++++...-+|++.+.... ......|......|...++.|++++.++. .
T Consensus 56 ~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~ 135 (338)
T PRK09422 56 ILGHEGIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKVPEG 135 (338)
T ss_pred cCCcccceEEEEECCCCccCCCCCEEEEccCCCCCCCChhhcCCCcccCCCccccCccccCcceeEEEEchHHeEeCCCC
Confidence 4699999999999999988889998875211 01112222221112222455555544443 2
Q ss_pred ccccccccC-CCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhC
Q 010322 214 VRTETNIAA-GAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRSEERVAAICEELN 291 (513)
Q Consensus 214 Vr~et~i~~-~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~-~G~~~V~v~nRs~~ra~~la~~~g 291 (513)
+........ .+...+++++..+ ....|.+|+|.|+|++|.++++.++. .|+. |+++.++.++. ++++++|
T Consensus 136 ~~~~~aa~l~~~~~ta~~~~~~~------~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~-v~~~~~~~~~~-~~~~~~g 207 (338)
T PRK09422 136 LDPAQASSITCAGVTTYKAIKVS------GIKPGQWIAIYGAGGLGNLALQYAKNVFNAK-VIAVDINDDKL-ALAKEVG 207 (338)
T ss_pred CCHHHeehhhcchhHHHHHHHhc------CCCCCCEEEEECCcHHHHHHHHHHHHhCCCe-EEEEeCChHHH-HHHHHcC
Confidence 222222211 2334456665433 23468999999999999999999997 4884 88999998887 4457777
Q ss_pred Ccceeeccc--ch----HHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 292 GVEIIYKPL--SE----MLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 292 ~~~~~~~~~--~~----~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
.. ..+... .+ +.+...+.|++|.+++++..+ .+.++.+. .+|..+.++
T Consensus 208 ~~-~v~~~~~~~~~~~~v~~~~~~~d~vi~~~~~~~~~--~~~~~~l~-----~~G~~v~~g 261 (338)
T PRK09422 208 AD-LTINSKRVEDVAKIIQEKTGGAHAAVVTAVAKAAF--NQAVDAVR-----AGGRVVAVG 261 (338)
T ss_pred Cc-EEecccccccHHHHHHHhcCCCcEEEEeCCCHHHH--HHHHHhcc-----CCCEEEEEe
Confidence 42 122111 11 222334688666666655443 44555443 356555555
|
|
| >TIGR00692 tdh L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00015 Score=74.81 Aligned_cols=179 Identities=18% Similarity=0.321 Sum_probs=102.3
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch----------HHHHHHHhHhcCcccchhhHHHHHHHhh--------Cccc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ----------VKQVVKVGQGVVGFGRNISGLFKHAISV--------GKRV 214 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ----------vk~A~~~a~~~~~~g~~L~~lf~~ai~v--------~k~V 214 (513)
..|+|+++.+..|+++++...+|+..+... .....+.|.+...+|...++.+++++.+ +..+
T Consensus 58 ~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~ 137 (340)
T TIGR00692 58 VVGHEVAGEVVGIGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSI 137 (340)
T ss_pred ccccceEEEEEEECCCCCcCCCCCEEEECCcCCCCCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEECcCCC
Confidence 469999999999999998899999887621 0111222322211111112334433333 3322
Q ss_pred cccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcc
Q 010322 215 RTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVE 294 (513)
Q Consensus 215 r~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~ 294 (513)
..+......+.+.+++++ +. ....|.+|+|.|+|.+|.++++.++..|++.|+++++++++. +++++++..
T Consensus 138 ~~~~a~~~~~~~~a~~~~-~~------~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~-~~~~~~g~~- 208 (340)
T TIGR00692 138 PPEYATIQEPLGNAVHTV-LA------GPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRL-ELAKKMGAT- 208 (340)
T ss_pred ChHhhhhcchHHHHHHHH-Hc------cCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHHhCCc-
Confidence 222221122333444432 11 124789999999999999999999999987688887777776 566677642
Q ss_pred eeeccc-ch----HHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 295 IIYKPL-SE----MLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 295 ~~~~~~-~~----~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
..+... .+ +.+.. .+.|+|++|+++...+ .+.+..+. ++|..+.++
T Consensus 209 ~~v~~~~~~~~~~l~~~~~~~~~d~vld~~g~~~~~--~~~~~~l~-----~~g~~v~~g 261 (340)
T TIGR00692 209 YVVNPFKEDVVKEVADLTDGEGVDVFLEMSGAPKAL--EQGLQAVT-----PGGRVSLLG 261 (340)
T ss_pred EEEcccccCHHHHHHHhcCCCCCCEEEECCCCHHHH--HHHHHhhc-----CCCEEEEEc
Confidence 112111 11 22222 4689999998765332 23344432 356555554
|
E. coli His-90 modulates substrate specificity and is believed part of the active site. |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.1e-05 Score=76.31 Aligned_cols=90 Identities=19% Similarity=0.312 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEEc-ccHHHHHHHHHHHHcCCCeEEEEe-CCHHHHHHHHHHhCCcceeecccchHHh
Q 010322 228 SSAAVELALMKLPESSHATARMLVIG-AGKMGKLVIKHLVAKGCTKMVVVN-RSEERVAAICEELNGVEIIYKPLSEMLS 305 (513)
Q Consensus 228 a~~Av~la~~~~~~~~l~g~~VlVIG-aG~mG~~ia~~L~~~G~~~V~v~n-Rs~~ra~~la~~~g~~~~~~~~~~~~~~ 305 (513)
+.+.+++.+.. + .++.|++|+||| .|-||..++..|...|+. |++++ ||.. +.+
T Consensus 142 p~ai~~ll~~~-~-i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~t-Vtv~~~rT~~---------------------l~e 197 (296)
T PRK14188 142 PLGCMMLLRRV-H-GDLSGLNAVVIGRSNLVGKPMAQLLLAANAT-VTIAHSRTRD---------------------LPA 197 (296)
T ss_pred HHHHHHHHHHh-C-CCCCCCEEEEEcCCcchHHHHHHHHHhCCCE-EEEECCCCCC---------------------HHH
Confidence 44555666543 2 478999999999 799999999999999985 99994 7741 233
Q ss_pred hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 306 CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
.++.+|+||+|++.+.. +...++. .| .++||+++-+
T Consensus 198 ~~~~ADIVIsavg~~~~-v~~~~lk---------~G-avVIDvGin~ 233 (296)
T PRK14188 198 VCRRADILVAAVGRPEM-VKGDWIK---------PG-ATVIDVGINR 233 (296)
T ss_pred HHhcCCEEEEecCChhh-cchheec---------CC-CEEEEcCCcc
Confidence 45679999999999874 4444432 13 6899998644
|
|
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.3e-05 Score=80.01 Aligned_cols=183 Identities=15% Similarity=0.188 Sum_probs=104.8
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchH---HH-------HHHHhHhcCcc---cch------------------h
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQV---KQ-------VVKVGQGVVGF---GRN------------------I 200 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQv---k~-------A~~~a~~~~~~---g~~------------------L 200 (513)
...|||+++.+.+|++++....+|+..+.... .. ..+.|...... |.. .
T Consensus 55 ~i~g~e~~G~V~~vG~~v~~~~~Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 134 (365)
T cd05279 55 VILGHEGAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLG 134 (365)
T ss_pred cccccceeEEEEEeCCCcccCCCCCEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccc
Confidence 35799999999999999988889998875321 00 11112111000 100 1
Q ss_pred hHHHHHHHhhCcc----ccccccc----cC-CCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCC
Q 010322 201 SGLFKHAISVGKR----VRTETNI----AA-GAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCT 271 (513)
Q Consensus 201 ~~lf~~ai~v~k~----Vr~et~i----~~-~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~ 271 (513)
.+.|++++.++.. ++..... .. .+...++.++.. .. ....|.+|+|.|+|++|.+++..++..|+.
T Consensus 135 ~g~~a~~~~v~~~~~~~lP~~~~~~~a~~~~~~~~ta~~al~~---~~--~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~ 209 (365)
T cd05279 135 TSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVN---TA--KVTPGSTCAVFGLGGVGLSVIMGCKAAGAS 209 (365)
T ss_pred cccccceEEecCCceEECCCCCCHHHhhHhccchhHHHHHHHh---cc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence 2355666555442 1211111 11 123333433211 11 234689999999999999999999999998
Q ss_pred eEEEEeCCHHHHHHHHHHhCCcceeecccc----hH----Hhh-cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCc
Q 010322 272 KMVVVNRSEERVAAICEELNGVEIIYKPLS----EM----LSC-AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGL 342 (513)
Q Consensus 272 ~V~v~nRs~~ra~~la~~~g~~~~~~~~~~----~~----~~~-l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~ 342 (513)
.|++++++.++. +++.++|.. .+.... +. .+. -.++|+||++++.+..+ ...++.+.+ .+|.
T Consensus 210 ~v~~~~~~~~~~-~~~~~~g~~--~~v~~~~~~~~~~~~l~~~~~~~~d~vid~~g~~~~~--~~~~~~l~~----~~G~ 280 (365)
T cd05279 210 RIIAVDINKDKF-EKAKQLGAT--ECINPRDQDKPIVEVLTEMTDGGVDYAFEVIGSADTL--KQALDATRL----GGGT 280 (365)
T ss_pred eEEEEeCCHHHH-HHHHHhCCC--eecccccccchHHHHHHHHhCCCCcEEEECCCCHHHH--HHHHHHhcc----CCCE
Confidence 788899998887 555777742 122111 11 111 14699999999864433 233444320 2465
Q ss_pred EEEEec
Q 010322 343 RLFIDI 348 (513)
Q Consensus 343 ~viiDl 348 (513)
.+.++.
T Consensus 281 ~v~~g~ 286 (365)
T cd05279 281 SVVVGV 286 (365)
T ss_pred EEEEec
Confidence 665554
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00013 Score=75.07 Aligned_cols=157 Identities=20% Similarity=0.233 Sum_probs=95.2
Q ss_pred hcCCceeeeeeeeccCCCC-cccCcchhhchHHHHHHHhHh--cCcccchhhHHHHHHHhhCc--------ccccccccc
Q 010322 153 LYNKDATQHLFEVSAGLDS-LVLGEGQILAQVKQVVKVGQG--VVGFGRNISGLFKHAISVGK--------RVRTETNIA 221 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS-~vvGE~qIlgQvk~A~~~a~~--~~~~g~~L~~lf~~ai~v~k--------~Vr~et~i~ 221 (513)
..|+|+++.+.+|++++++ ..+|+....-..-. ...|.. .|..+ ..++.|++++.++. .+..+....
T Consensus 66 ~~g~e~~G~V~~vG~~v~~~~~~Gd~V~~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~~ 143 (341)
T cd08262 66 VLGHEFCGEVVDYGPGTERKLKVGTRVTSLPLLL-CGQGASCGIGLSP-EAPGGYAEYMLLSEALLLRVPDGLSMEDAAL 143 (341)
T ss_pred ccccceeEEEEEeCCCCcCCCCCCCEEEecCCcC-CCCChhhhCCCCc-CCCCceeeeEEechHHeEECCCCCCHHHhhh
Confidence 4699999999999999987 88999876531100 001111 11111 12345555554443 222222222
Q ss_pred CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc
Q 010322 222 AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS 301 (513)
Q Consensus 222 ~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~ 301 (513)
..+.++++.++..+ .-..|.+|+|.|+|.+|.++++.++..|+..++++++++++. .++.+++.. .+....
T Consensus 144 ~~~~~~a~~~~~~~------~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~-~~~~~~g~~--~~i~~~ 214 (341)
T cd08262 144 TEPLAVGLHAVRRA------RLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERR-ALALAMGAD--IVVDPA 214 (341)
T ss_pred hhhHHHHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHHcCCc--EEEcCC
Confidence 23444555543322 124689999999999999999999999998788888888777 566777642 122211
Q ss_pred ------h---HHhhc--CCCcEEEEcCCCC
Q 010322 302 ------E---MLSCA--ADADVVFTSTASE 320 (513)
Q Consensus 302 ------~---~~~~l--~~aDVVI~AT~s~ 320 (513)
+ ..... .+.|+||++++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~d~vid~~g~~ 244 (341)
T cd08262 215 ADSPFAAWAAELARAGGPKPAVIFECVGAP 244 (341)
T ss_pred CcCHHHHHHHHHHHhCCCCCCEEEECCCCH
Confidence 1 11111 3589999998874
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=97.79 E-value=6.2e-05 Score=77.03 Aligned_cols=69 Identities=22% Similarity=0.352 Sum_probs=53.9
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
+|.|||+|.||..++..|...|. +|+++||++++.+.+.+. +.. .....+++.+.+..+|+||.|++.+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~-g~~--~~~s~~~~~~~~~~~dvIi~~vp~~ 70 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED-RTT--GVANLRELSQRLSAPRVVWVMVPHG 70 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc-CCc--ccCCHHHHHhhcCCCCEEEEEcCch
Confidence 69999999999999999999997 599999999998877753 321 1222334445566789999999886
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.78 E-value=6.2e-05 Score=72.73 Aligned_cols=78 Identities=21% Similarity=0.338 Sum_probs=57.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhCC----cceeec--
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS-------------------EERVAAICEELNG----VEIIYK-- 298 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs-------------------~~ra~~la~~~g~----~~~~~~-- 298 (513)
+.+.+|+|+|+|++|..+++.|...|+.+++++|.+ ..|++.+++.+.. ..+...
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 98 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE 98 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence 578999999999999999999999999999999986 2355555555431 111111
Q ss_pred --ccchHHhhcCCCcEEEEcCCCCc
Q 010322 299 --PLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 299 --~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
..+++.+.+.++|+||+|+.+..
T Consensus 99 ~i~~~~~~~~~~~~D~Vi~~~d~~~ 123 (202)
T TIGR02356 99 RVTAENLELLINNVDLVLDCTDNFA 123 (202)
T ss_pred cCCHHHHHHHHhCCCEEEECCCCHH
Confidence 11234566789999999997754
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00012 Score=77.37 Aligned_cols=136 Identities=18% Similarity=0.171 Sum_probs=84.3
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchHHH----------HHHHhHhcCcccc-hhhHHHHHHHhhCcc-------
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQ----------VVKVGQGVVGFGR-NISGLFKHAISVGKR------- 213 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~----------A~~~a~~~~~~g~-~L~~lf~~ai~v~k~------- 213 (513)
...|||+++.+.+++++++.+.+|+..+...... -+..|......|. ..++.|++++.++..
T Consensus 83 ~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~ 162 (393)
T cd08246 83 HIGGSDASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPK 162 (393)
T ss_pred cccccceEEEEEEeCCCCCcCCCCCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCC
Confidence 3569999999999999999889999987643110 1111111111111 123566665555432
Q ss_pred -ccccccc-cCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh
Q 010322 214 -VRTETNI-AAGAVSVSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL 290 (513)
Q Consensus 214 -Vr~et~i-~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~ 290 (513)
+..+... ...+.+.+++++..... . ....+.+|+|.|+ |.+|.+++..++..|++ ++++.+++++. ++++++
T Consensus 163 ~l~~~~aa~l~~~~~tA~~al~~~~~-~--~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~-vv~~~~s~~~~-~~~~~~ 237 (393)
T cd08246 163 HLSWEEAAAYMLVGATAYRMLFGWNP-N--TVKPGDNVLIWGASGGLGSMAIQLARAAGAN-PVAVVSSEEKA-EYCRAL 237 (393)
T ss_pred CCCHHHHhhhcccHHHHHHHHhhccc-c--cCCCCCEEEEECCCcHHHHHHHHHHHHcCCe-EEEEeCCHHHH-HHHHHc
Confidence 2211111 12344555655432110 0 2346889999997 99999999999999996 66778888887 556678
Q ss_pred CC
Q 010322 291 NG 292 (513)
Q Consensus 291 g~ 292 (513)
|.
T Consensus 238 G~ 239 (393)
T cd08246 238 GA 239 (393)
T ss_pred CC
Confidence 74
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00014 Score=75.04 Aligned_cols=180 Identities=16% Similarity=0.181 Sum_probs=104.0
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH-----------HHHHHHhHhcCc-------ccchhhHHHHHHHhhCcc-
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV-----------KQVVKVGQGVVG-------FGRNISGLFKHAISVGKR- 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv-----------k~A~~~a~~~~~-------~g~~L~~lf~~ai~v~k~- 213 (513)
..|||+++.+..+++++..+-+|+..+...+ .+..+.|..... .+...++.|++++.++..
T Consensus 56 ~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~ 135 (337)
T cd05283 56 VPGHEIVGIVVAVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERF 135 (337)
T ss_pred ccCcceeeEEEEECCCCcccCCCCEEEEecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhh
Confidence 5699999999999999999999998863211 011222211110 011224555555555442
Q ss_pred ---cccccccc-CCCchH----HHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 010322 214 ---VRTETNIA-AGAVSV----SSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAA 285 (513)
Q Consensus 214 ---Vr~et~i~-~~~~Sv----a~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~ 285 (513)
++...... ..++++ ++.++.. + ....|.+|+|.|+|.+|.++++.++..|+ +|+++.++.++. +
T Consensus 136 ~~~lp~~~~~~~aa~l~~~~~ta~~~~~~----~--~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~-~ 207 (337)
T cd05283 136 VFKIPEGLDSAAAAPLLCAGITVYSPLKR----N--GVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKK-E 207 (337)
T ss_pred eEECCCCCCHHHhhhhhhHHHHHHHHHHh----c--CCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHH-H
Confidence 11111110 112222 2333322 2 23468899999999999999999999999 588999988877 4
Q ss_pred HHHHhCCcceeecccc-hH-HhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 286 ICEELNGVEIIYKPLS-EM-LSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 286 la~~~g~~~~~~~~~~-~~-~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
++..++.. ..+.... +. ...-.++|+||+|++....+ .+.++.+. .+|..+.++.
T Consensus 208 ~~~~~g~~-~vi~~~~~~~~~~~~~~~d~v~~~~g~~~~~--~~~~~~l~-----~~G~~v~~g~ 264 (337)
T cd05283 208 DALKLGAD-EFIATKDPEAMKKAAGSLDLIIDTVSASHDL--DPYLSLLK-----PGGTLVLVGA 264 (337)
T ss_pred HHHHcCCc-EEecCcchhhhhhccCCceEEEECCCCcchH--HHHHHHhc-----CCCEEEEEec
Confidence 45667642 1122111 11 12235789999999986422 34444433 2455555543
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=8.2e-05 Score=78.69 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=69.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc-
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA- 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~- 321 (513)
.+.|++|+|||.|.||+.+++.|+..|++ |.++||+.... .....++. . ...++.+.+..+|+|+.+++...
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~~-V~~~dr~~~~~-~~~~~~g~---~--~~~~l~ell~~aDvV~l~lPlt~~ 261 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDVK-LHYTDRHRLPE-EVEQELGL---T--YHVSFDSLVSVCDVVTIHCPLHPE 261 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECCCCCch-hhHhhcCc---e--ecCCHHHHhhcCCEEEEcCCCCHH
Confidence 46899999999999999999999999994 99999986322 33333331 1 23457777899999999988653
Q ss_pred --cCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 322 --PLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 322 --~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
.+|+.+.+..+. ...++|+.+
T Consensus 262 T~~li~~~~l~~mk-------~ga~lIN~a 284 (385)
T PRK07574 262 TEHLFDADVLSRMK-------RGSYLVNTA 284 (385)
T ss_pred HHHHhCHHHHhcCC-------CCcEEEECC
Confidence 467777776653 226888876
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=8.9e-05 Score=75.77 Aligned_cols=68 Identities=25% Similarity=0.410 Sum_probs=54.8
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.+|.|||+|.||..++..|...|. +|+++||++++.+.+.+. +. . ...+..+.+.++|+||.|++.+.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~~~~~~~~~~-g~---~--~~~s~~~~~~~aDvVi~~vp~~~ 69 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNPQAVDALVDK-GA---T--PAASPAQAAAGAEFVITMLPNGD 69 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHc-CC---c--ccCCHHHHHhcCCEEEEecCCHH
Confidence 379999999999999999999997 599999999998777653 32 1 22344556789999999999875
|
|
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00012 Score=74.69 Aligned_cols=156 Identities=19% Similarity=0.227 Sum_probs=89.8
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch------HH----HHHHHhHhcCcccc-hhhHHHHHHHhhCc--------c
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ------VK----QVVKVGQGVVGFGR-NISGLFKHAISVGK--------R 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ------vk----~A~~~a~~~~~~g~-~L~~lf~~ai~v~k--------~ 213 (513)
..|+|+++.+.+++++ ..+|+.+.... +. ..+..+......+. ..++.+++++.++. .
T Consensus 53 ~~G~e~~G~Vv~~G~~---~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~ 129 (319)
T cd08242 53 VPGHEFVGIVEEGPEA---ELVGKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVVPDL 129 (319)
T ss_pred ccCceEEEEEEEeCCC---CCCCCeEEECCCcCCCCChhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEECcCC
Confidence 5699999999999987 34787765311 10 01111111111111 11344555444443 2
Q ss_pred ccccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc
Q 010322 214 VRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV 293 (513)
Q Consensus 214 Vr~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~ 293 (513)
+..+......+.+.++++++.. .-..+.+|+|.|+|.+|.++++.++..|++ |+++.+++++. ++++++|..
T Consensus 130 ~~~~~aa~~~~~~~~~~~~~~~------~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~-vi~~~~~~~~~-~~~~~~g~~ 201 (319)
T cd08242 130 VPDEQAVFAEPLAAALEILEQV------PITPGDKVAVLGDGKLGLLIAQVLALTGPD-VVLVGRHSEKL-ALARRLGVE 201 (319)
T ss_pred CCHHHhhhhhHHHHHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEEcCCHHHH-HHHHHcCCc
Confidence 2222111113344344333221 234689999999999999999999999997 88888888887 455567742
Q ss_pred ceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 294 EIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 294 ~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
....+.+. ..-.++|++|+|++....
T Consensus 202 --~~~~~~~~-~~~~~~d~vid~~g~~~~ 227 (319)
T cd08242 202 --TVLPDEAE-SEGGGFDVVVEATGSPSG 227 (319)
T ss_pred --EEeCcccc-ccCCCCCEEEECCCChHH
Confidence 11222221 112469999999987443
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=5.5e-05 Score=76.08 Aligned_cols=73 Identities=23% Similarity=0.393 Sum_probs=60.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccC
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPL 323 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~v 323 (513)
....+|.+||.|.||..++.+|...|++ |+|+||+.++.+.|.+. |+ . ..+...+..+.+|+||++.+.+..+
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~k-VtV~dr~~~k~~~f~~~-Ga---~--v~~sPaeVae~sDvvitmv~~~~~v 105 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYK-VTVYDRTKDKCKEFQEA-GA---R--VANSPAEVAEDSDVVITMVPNPKDV 105 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCE-EEEEeCcHHHHHHHHHh-ch---h--hhCCHHHHHhhcCEEEEEcCChHhh
Confidence 3578899999999999999999999995 99999999999888875 32 1 2345566678999999999998654
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=97.73 E-value=7.3e-05 Score=81.43 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=56.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh---CCcceeecccchHHhh---cCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL---NGVEIIYKPLSEMLSC---AADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~---g~~~~~~~~~~~~~~~---l~~aDVVI~AT~s~ 320 (513)
.+|.+||.|.||..++.+|...|.. |+|+||++++.+.+.+.. |.. .+...+++.+. ++.+|+||.|.+.+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~-V~V~NRt~~k~~~l~~~~~~~Ga~--~~~~a~s~~e~v~~l~~~dvIi~~v~~~ 83 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKKEGNL--PLYGFKDPEDFVLSIQKPRSVIILVKAG 83 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCe-EEEECCCHHHHHHHHHhhhhcCCc--ccccCCCHHHHHhcCCCCCEEEEECCCc
Confidence 4699999999999999999999984 999999999998887642 221 11223344444 44599999999988
Q ss_pred ccC
Q 010322 321 APL 323 (513)
Q Consensus 321 ~~v 323 (513)
.++
T Consensus 84 ~aV 86 (493)
T PLN02350 84 APV 86 (493)
T ss_pred HHH
Confidence 765
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=9.9e-05 Score=78.08 Aligned_cols=93 Identities=17% Similarity=0.294 Sum_probs=68.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc-
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA- 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~- 321 (513)
.+.|++|+|||.|.||+.+++.|...|++ |.+++|+.... +.....+. . ..+++.+.+..+|+|+.+++...
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~~~~~~-~~~~~~g~---~--~~~~l~ell~~sDvV~l~lPlt~~ 268 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDRLKMDP-ELEKETGA---K--FEEDLDAMLPKCDVVVINTPLTEK 268 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECCCCcch-hhHhhcCc---e--ecCCHHHHHhhCCEEEEeCCCCHH
Confidence 57899999999999999999999999995 89999985333 22333331 1 23467777889999999988643
Q ss_pred --cCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 322 --PLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 322 --~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
.+|+.+.+..+. ...++|+.+
T Consensus 269 T~~li~~~~l~~mk-------~ga~lIN~a 291 (386)
T PLN03139 269 TRGMFNKERIAKMK-------KGVLIVNNA 291 (386)
T ss_pred HHHHhCHHHHhhCC-------CCeEEEECC
Confidence 466776666653 226777765
|
|
| >cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00014 Score=74.85 Aligned_cols=179 Identities=22% Similarity=0.271 Sum_probs=105.1
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch------HHHH---H-HHhHhcCcccchhhHHHHHHHhhCcc---------
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ------VKQV---V-KVGQGVVGFGRNISGLFKHAISVGKR--------- 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ------vk~A---~-~~a~~~~~~g~~L~~lf~~ai~v~k~--------- 213 (513)
..|+|+++.+.++++++..+.+|+..+.-. +-.. | ..|.....+|...++.|++++.++..
T Consensus 56 ~~g~~~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~~ 135 (343)
T cd08235 56 ILGHEIAGEIVEVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVLK 135 (343)
T ss_pred ccccceEEEEEeeCCCCCCCCCCCEEEEccCCCCCCChHHHCcCcccCCCcceeccCCCCcceeeEEecccccccccEEE
Confidence 569999999999999998888999887531 0000 0 01111111122234556665555432
Q ss_pred ----ccccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 010322 214 ----VRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEE 289 (513)
Q Consensus 214 ----Vr~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~ 289 (513)
+..+......+.+.+++++... .-..|.+|+|.|+|.+|.++++.++..|++.|+++.+++++...+ ..
T Consensus 136 lP~~~~~~~aa~~~~~~~a~~~l~~~------~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~-~~ 208 (343)
T cd08235 136 LPDNVSFEEAALVEPLACCINAQRKA------GIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFA-KK 208 (343)
T ss_pred CCCCCCHHHHHhhhHHHHHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HH
Confidence 1211221223445555554322 124689999999999999999999999987588888888888554 56
Q ss_pred hCCcceeecccc------hHHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 290 LNGVEIIYKPLS------EMLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 290 ~g~~~~~~~~~~------~~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
++.. .+.+.. .+.... .++|+||+|++.+..+ ...++.+. .+|+.+.++
T Consensus 209 ~g~~--~~~~~~~~~~~~~i~~~~~~~~vd~vld~~~~~~~~--~~~~~~l~-----~~g~~v~~~ 265 (343)
T cd08235 209 LGAD--YTIDAAEEDLVEKVRELTDGRGADVVIVATGSPEAQ--AQALELVR-----KGGRILFFG 265 (343)
T ss_pred hCCc--EEecCCccCHHHHHHHHhCCcCCCEEEECCCChHHH--HHHHHHhh-----cCCEEEEEe
Confidence 6631 222221 122222 2589999998865332 23344332 245555554
|
Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i |
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0013 Score=67.67 Aligned_cols=188 Identities=19% Similarity=0.242 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhcCCCh--------hhhhhHHHHhcCCceeeeeeeeccCCCCcccCc-chhhchHHHHHHHhHhcCcccc
Q 010322 128 VKEVTEWMSKTSGIPV--------AELCEHRFLLYNKDATQHLFEVSAGLDSLVLGE-GQILAQVKQVVKVGQGVVGFGR 198 (513)
Q Consensus 128 ~~~~~~~l~~~~~~~~--------~~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE-~qIlgQvk~A~~~a~~~~~~g~ 198 (513)
.+.+..+|....|++. ++...++-....++ -.-+..=|+.+...+.-+ ++.+ .++....+.-++|.
T Consensus 83 qD~vaaAl~~~~GipVfA~kGe~~eeY~~~~~~vl~~~-p~iiiDDG~D~~~~vh~~~~~l~----~~i~G~tEETTTGV 157 (420)
T COG0499 83 QDDVAAALAAKEGIPVFAWKGETLEEYYEAIDQVLDWE-PNIIIDDGGDLTKLVHLERPELL----DAIKGGTEETTTGV 157 (420)
T ss_pred cHHHHHHHhhccCceEEEEcCCCHHHHHHHHHHHhCcC-CCEEEecCcceeeeeecccHHHH----HHhcCCCcccchHH
Confidence 4567788866656653 33333333333332 222333333333444333 2222 33444444455553
Q ss_pred hhhHHHHHH----HhhCcc-ccc-cc-cccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCC
Q 010322 199 NISGLFKHA----ISVGKR-VRT-ET-NIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCT 271 (513)
Q Consensus 199 ~L~~lf~~a----i~v~k~-Vr~-et-~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~ 271 (513)
++|.+.. +++|.- |.+ -| ....|..+++.-+++-..+... --+.||+|+|.|.|-.|+.+|..|+..|+.
T Consensus 158 --~RL~am~~~G~L~fPai~VNDs~tK~~FDNrYGtgqS~~DgI~RaTn-~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ 234 (420)
T COG0499 158 --HRLRAMEKDGVLKFPAINVNDSVTKSLFDNRYGTGQSLLDGILRATN-VLLAGKNVVVAGYGWVGRGIAMRLRGMGAR 234 (420)
T ss_pred --HHHHHHHhcCCcccceEeecchhhhcccccccccchhHHHHHHhhhc-eeecCceEEEecccccchHHHHHhhcCCCe
Confidence 3444333 444431 111 11 1233444444433332222111 126899999999999999999999999995
Q ss_pred eEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccCCChhhhhcC
Q 010322 272 KMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDL 332 (513)
Q Consensus 272 ~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~ 332 (513)
|.|+.-+|-++-+ ..+.+ +.+.+. .++...+||+|+|||..+ +++.+++..+
T Consensus 235 -ViVtEvDPI~Ale--A~MdG--f~V~~m---~~Aa~~gDifiT~TGnkd-Vi~~eh~~~M 286 (420)
T COG0499 235 -VIVTEVDPIRALE--AAMDG--FRVMTM---EEAAKTGDIFVTATGNKD-VIRKEHFEKM 286 (420)
T ss_pred -EEEEecCchHHHH--HhhcC--cEEEEh---HHhhhcCCEEEEccCCcC-ccCHHHHHhc
Confidence 9999999887633 33333 355544 445568899999999975 4677888765
|
|
| >cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00029 Score=70.94 Aligned_cols=168 Identities=18% Similarity=0.145 Sum_probs=100.1
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccccC-CCchHHHHH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAA-GAVSVSSAA 231 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~~-~~~Sva~~A 231 (513)
..|+|+++.+.+++++...+.+|+..+... ..|..+.++.---...+.++..+..+..... .+...++.+
T Consensus 54 ~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~---------~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~ 124 (305)
T cd08270 54 VPGWDAAGVVERAAADGSGPAVGARVVGLG---------AMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRA 124 (305)
T ss_pred cccceeEEEEEEeCCCCCCCCCCCEEEEec---------CCcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHH
Confidence 479999999999999988888899876421 1122222211111123333333322222111 122234444
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCC
Q 010322 232 VELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADA 310 (513)
Q Consensus 232 v~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~a 310 (513)
+... ....|.+|+|.|+ |.+|..++..++..|++ |+.+.++.++. ++++++|.. ..+....+... .+.
T Consensus 125 ~~~~------~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~-v~~~~~~~~~~-~~~~~~g~~-~~~~~~~~~~~--~~~ 193 (305)
T cd08270 125 LRRG------GPLLGRRVLVTGASGGVGRFAVQLAALAGAH-VVAVVGSPARA-EGLRELGAA-EVVVGGSELSG--APV 193 (305)
T ss_pred HHHh------CCCCCCEEEEECCCcHHHHHHHHHHHHcCCE-EEEEeCCHHHH-HHHHHcCCc-EEEeccccccC--CCc
Confidence 3322 2346899999999 99999999999999984 88889998887 445557642 12222222221 368
Q ss_pred cEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 311 DVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 311 DVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
|++++++++. .+ ...++.+. .+|..+.++.
T Consensus 194 d~vl~~~g~~-~~--~~~~~~l~-----~~G~~v~~g~ 223 (305)
T cd08270 194 DLVVDSVGGP-QL--ARALELLA-----PGGTVVSVGS 223 (305)
T ss_pred eEEEECCCcH-HH--HHHHHHhc-----CCCEEEEEec
Confidence 9999999875 22 34455443 3565666653
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00013 Score=75.91 Aligned_cols=89 Identities=13% Similarity=0.216 Sum_probs=66.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc-
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA- 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~- 321 (513)
.+.|++|+|||+|.||+.+++.|...|. +|++++|++.....+. . ...++.+.+.++|+|+.+++...
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~~~~~~~--------~--~~~~l~ell~~aDiVil~lP~t~~ 211 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPNKDLDFL--------T--YKDSVKEAIKDADIISLHVPANKE 211 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChhHhhhhh--------h--ccCCHHHHHhcCCEEEEeCCCcHH
Confidence 4688999999999999999999999998 5999999875432110 1 12356677889999999999874
Q ss_pred --cCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 322 --PLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 322 --~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
.++..+.+..+. ...++|+.+
T Consensus 212 t~~li~~~~l~~mk-------~gavlIN~a 234 (330)
T PRK12480 212 SYHLFDKAMFDHVK-------KGAILVNAA 234 (330)
T ss_pred HHHHHhHHHHhcCC-------CCcEEEEcC
Confidence 455555555542 236888876
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00011 Score=70.67 Aligned_cols=94 Identities=23% Similarity=0.282 Sum_probs=64.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeC-CHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNR-SEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFL 325 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR-s~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~ 325 (513)
++++|+|+|.||..++..|...|.+ |++.+| .+++.+..++.++. .+.. .+..++.+.+||||.|++-....=.
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~e-V~igs~r~~~~~~a~a~~l~~---~i~~-~~~~dA~~~aDVVvLAVP~~a~~~v 76 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHE-VIIGSSRGPKALAAAAAALGP---LITG-GSNEDAAALADVVVLAVPFEAIPDV 76 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCe-EEEecCCChhHHHHHHHhhcc---cccc-CChHHHHhcCCEEEEeccHHHHHhH
Confidence 5799999999999999999999985 777755 45555566666553 2222 3445667889999999988654211
Q ss_pred hhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 326 KDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 326 ~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
...+... -+..++||..+|-
T Consensus 77 ~~~l~~~-------~~~KIvID~tnp~ 96 (211)
T COG2085 77 LAELRDA-------LGGKIVIDATNPI 96 (211)
T ss_pred HHHHHHH-------hCCeEEEecCCCc
Confidence 1222221 1348999998873
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=97.67 E-value=9.9e-05 Score=68.32 Aligned_cols=73 Identities=26% Similarity=0.460 Sum_probs=54.6
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC------cce--eecccchHHhhcCCCcEEEEcCCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG------VEI--IYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~------~~~--~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
+|.|||+|.+|.++|..|...|. +|+++.|+++..+.+.+.... ... .+....|+.++++++|+||.|+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH
Confidence 68999999999999999999995 699999999888777764321 100 112246788889999999999998
Q ss_pred Cc
Q 010322 320 EA 321 (513)
Q Consensus 320 ~~ 321 (513)
..
T Consensus 80 ~~ 81 (157)
T PF01210_consen 80 QA 81 (157)
T ss_dssp GG
T ss_pred HH
Confidence 64
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=8e-05 Score=76.76 Aligned_cols=91 Identities=14% Similarity=0.237 Sum_probs=66.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc-
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA- 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~- 321 (513)
.+.|++|+|||.|.||+.+++.|...|++ |.+++|+..+.. +. ..+.+..++.+.+.++|+|+.+.+.+.
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~-V~~~~~~~~~~~------~~--~~~~~~~~l~e~l~~aDvvv~~lPlt~~ 203 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGFP-LRCWSRSRKSWP------GV--QSFAGREELSAFLSQTRVLINLLPNTPE 203 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCCCCCC------Cc--eeecccccHHHHHhcCCEEEECCCCCHH
Confidence 46799999999999999999999999994 999999754321 11 112234577888899999999988654
Q ss_pred --cCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 322 --PLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 322 --~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
.+++.+.+..+. ...++|+++
T Consensus 204 T~~li~~~~l~~mk-------~ga~lIN~a 226 (312)
T PRK15469 204 TVGIINQQLLEQLP-------DGAYLLNLA 226 (312)
T ss_pred HHHHhHHHHHhcCC-------CCcEEEECC
Confidence 356666666543 125777765
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00025 Score=74.97 Aligned_cols=108 Identities=20% Similarity=0.236 Sum_probs=73.0
Q ss_pred cCCCchHHHHHHH----HHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee
Q 010322 221 AAGAVSVSSAAVE----LALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII 296 (513)
Q Consensus 221 ~~~~~Sva~~Av~----la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~ 296 (513)
+.++.+|+-+++. +++. .+ ..+.|++|+|||.|.||+.+++.|...|++ |.++|+..... . +.
T Consensus 89 g~na~aVAE~v~~~lL~l~r~-~g-~~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp~~~~~-----~-~~---- 155 (381)
T PRK00257 89 GCNARGVVDYVLGSLLTLAER-EG-VDLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDPPRQEA-----E-GD---- 155 (381)
T ss_pred CcChHHHHHHHHHHHHHHhcc-cC-CCcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECCccccc-----c-cC----
Confidence 4455566654442 2222 22 467899999999999999999999999995 99999853211 1 11
Q ss_pred ecccchHHhhcCCCcEEEEcCCCC-------ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 297 YKPLSEMLSCAADADVVFTSTASE-------APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 297 ~~~~~~~~~~l~~aDVVI~AT~s~-------~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+.++.+.+..+|+|+.+++.. ..+|+.+.+..+.+ ..++|..+
T Consensus 156 -~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~-------gailIN~a 207 (381)
T PRK00257 156 -GDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRP-------GAWLINAS 207 (381)
T ss_pred -ccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCC-------CeEEEECC
Confidence 12345667778999999998863 35778777776532 25666654
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00011 Score=73.40 Aligned_cols=68 Identities=19% Similarity=0.337 Sum_probs=53.9
Q ss_pred eEEEEcccHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGC--TKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~--~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
+|.|||+|.||..+++.|...|. ..+.+++|+.++++.+++.+++. . ...+..+.+..+|+||.|++.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~--~--~~~~~~~~~~~aDvVilav~p 71 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKV--R--IAKDNQAVVDRSDVVFLAVRP 71 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCc--e--EeCCHHHHHHhCCEEEEEeCH
Confidence 69999999999999999998874 35789999999998888876421 2 223444556789999999994
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00013 Score=74.83 Aligned_cols=70 Identities=20% Similarity=0.160 Sum_probs=55.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+.|++|.|||.|.||+.+++.|+..|+ +|++++|.. +..+.+...|. .+ .++.++++.+|+|+.+++.+
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~-~s~~~A~~~G~---~v---~sl~Eaak~ADVV~llLPd~ 82 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPG-KSFEVAKADGF---EV---MSVSEAVRTAQVVQMLLPDE 82 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcc-hhhHHHHHcCC---EE---CCHHHHHhcCCEEEEeCCCh
Confidence 4689999999999999999999999999 498998863 34355555442 22 25677788999999999864
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0003 Score=74.18 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=73.8
Q ss_pred ccCCCchHHHHHHHH----HHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcce
Q 010322 220 IAAGAVSVSSAAVEL----ALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEI 295 (513)
Q Consensus 220 i~~~~~Sva~~Av~l----a~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~ 295 (513)
.+.++.+|+-.++.+ ++. .+ ..+.|++|+|||.|.||+.+++.|...|++ |.++|+..... +. .
T Consensus 88 pg~na~aVAE~~~~~lL~l~r~-~g-~~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp~~~~~-------~~-~- 155 (378)
T PRK15438 88 PGCNAIAVVEYVFSSLLMLAER-DG-FSLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDPPRADR-------GD-E- 155 (378)
T ss_pred CCcCchHHHHHHHHHHHHHhcc-CC-CCcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCccccc-------cc-c-
Confidence 355666777555432 222 22 467999999999999999999999999995 88998752210 11 0
Q ss_pred eecccchHHhhcCCCcEEEEcCCCC-------ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 296 IYKPLSEMLSCAADADVVFTSTASE-------APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 296 ~~~~~~~~~~~l~~aDVVI~AT~s~-------~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+.++.+.+..+|+|+.+++.. ..+++.+.+..+.+ ..++|+.+
T Consensus 156 --~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~-------gailIN~a 207 (378)
T PRK15438 156 --GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKP-------GAILINAC 207 (378)
T ss_pred --cccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCC-------CcEEEECC
Confidence 12346677788999999988753 34677777776532 25566654
|
|
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00056 Score=69.50 Aligned_cols=169 Identities=17% Similarity=0.171 Sum_probs=99.0
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCcccccccccc--CCCchHHHH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIA--AGAVSVSSA 230 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~--~~~~Sva~~ 230 (513)
..|||+++.+.+++++++.+-+|++...... .|....+..--....+.+++.+..+.... ..+ ..++.
T Consensus 61 ~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~---------~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~-~ta~~ 130 (324)
T cd08292 61 IGGSEAVGVVDAVGEGVKGLQVGQRVAVAPV---------HGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMP-LSALM 130 (324)
T ss_pred CCCcceEEEEEEeCCCCCCCCCCCEEEeccC---------CCcceeEEEEchHHeEECCCCCCHHHhhhccccH-HHHHH
Confidence 4799999999999999988889998765310 12222221111122333444333222211 112 22344
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc-h----HH
Q 010322 231 AVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS-E----ML 304 (513)
Q Consensus 231 Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~-~----~~ 304 (513)
++..+ .-..|.+|+|.|+ |.+|.++++.++..|++ ++++.++.++...+++ +|. ...+...+ + +.
T Consensus 131 ~~~~~------~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~-v~~~~~~~~~~~~~~~-~g~-~~~~~~~~~~~~~~i~ 201 (324)
T cd08292 131 LLDFL------GVKPGQWLIQNAAGGAVGKLVAMLAAARGIN-VINLVRRDAGVAELRA-LGI-GPVVSTEQPGWQDKVR 201 (324)
T ss_pred HHHhh------CCCCCCEEEEcccccHHHHHHHHHHHHCCCe-EEEEecCHHHHHHHHh-cCC-CEEEcCCCchHHHHHH
Confidence 43322 2346899999987 99999999999999995 7778888777756654 653 21121111 1 22
Q ss_pred hhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 305 SCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 305 ~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
... .++|+||+|++.+. . .+.++.+. .+|..+.++.
T Consensus 202 ~~~~~~~~d~v~d~~g~~~-~--~~~~~~l~-----~~g~~v~~g~ 239 (324)
T cd08292 202 EAAGGAPISVALDSVGGKL-A--GELLSLLG-----EGGTLVSFGS 239 (324)
T ss_pred HHhCCCCCcEEEECCCChh-H--HHHHHhhc-----CCcEEEEEec
Confidence 222 36999999998742 2 34455443 3565555543
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00041 Score=70.72 Aligned_cols=181 Identities=19% Similarity=0.284 Sum_probs=98.4
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH-----------HHHHHHhHhcCcccchhhHHHHHH--------HhhCcc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV-----------KQVVKVGQGVVGFGRNISGLFKHA--------ISVGKR 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv-----------k~A~~~a~~~~~~g~~L~~lf~~a--------i~v~k~ 213 (513)
..|+|+++.+..|++++....+|+..+..+. .+.+..|.+...+|...++.|.++ +.+++.
T Consensus 58 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~ 137 (306)
T cd08258 58 VLGHEFSGTIVEVGPDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELPEN 137 (306)
T ss_pred eeccceEEEEEEECCCcCcCCCCCEEEEccCcCCCCCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEECcCC
Confidence 5699999999999999998999998876431 111112211111111112333333 333333
Q ss_pred ccccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEE--eCCHHHHHHHHHHhC
Q 010322 214 VRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVV--NRSEERVAAICEELN 291 (513)
Q Consensus 214 Vr~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~--nRs~~ra~~la~~~g 291 (513)
+..+......+...++.++.... .-..+.+|+|.|+|.+|.++++.++..|++ |+++ +++.++. .++..+|
T Consensus 138 ~~~~~aa~~~~~~~a~~~l~~~~-----~~~~g~~vlI~g~g~~g~~~~~la~~~G~~-v~~~~~~~~~~~~-~~~~~~g 210 (306)
T cd08258 138 LSLEAAALTEPLAVAVHAVAERS-----GIRPGDTVVVFGPGPIGLLAAQVAKLQGAT-VVVVGTEKDEVRL-DVAKELG 210 (306)
T ss_pred CCHHHHHhhchHHHHHHHHHHhc-----CCCCCCEEEEECCCHHHHHHHHHHHHcCCE-EEEECCCCCHHHH-HHHHHhC
Confidence 32222211223334444432111 123688999999999999999999999986 6555 3444455 5666676
Q ss_pred Ccceeecccch----HHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 292 GVEIIYKPLSE----MLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 292 ~~~~~~~~~~~----~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
...+ .....+ +.... .+.|+++++.+.+..+ ...+..+. .+|..+.++.
T Consensus 211 ~~~~-~~~~~~~~~~l~~~~~~~~vd~vld~~g~~~~~--~~~~~~l~-----~~G~~v~~g~ 265 (306)
T cd08258 211 ADAV-NGGEEDLAELVNEITDGDGADVVIECSGAVPAL--EQALELLR-----KGGRIVQVGI 265 (306)
T ss_pred Cccc-CCCcCCHHHHHHHHcCCCCCCEEEECCCChHHH--HHHHHHhh-----cCCEEEEEcc
Confidence 4211 010111 22222 3689999998754332 23333332 3565555554
|
This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00019 Score=73.44 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=51.6
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC---CCcEEEEcCCCCcc
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA---DADVVFTSTASEAP 322 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~---~aDVVI~AT~s~~~ 322 (513)
+|.|||.|.||..++..|...|. +|+++||++++.+.+.+ .|. . ..++..+.+. .+|+||.|++.+..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~-~g~---~--~~~s~~~~~~~~~~advVi~~vp~~~~ 72 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVDVAGK-LGI---T--ARHSLEELVSKLEAPRTIWVMVPAGEV 72 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH-CCC---e--ecCCHHHHHHhCCCCCEEEEEecCchH
Confidence 69999999999999999999997 59999999999877643 342 1 1233334333 37999999998743
|
|
| >cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00012 Score=74.74 Aligned_cols=175 Identities=17% Similarity=0.142 Sum_probs=99.3
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCcccchhhHHHHHHHhhCcc--------c
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVGFGRNISGLFKHAISVGKR--------V 214 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~~g~~L~~lf~~ai~v~k~--------V 214 (513)
..|||+++.+..++++++.+-+|+..+.... .+-++.|......|...++.|..++.+++. +
T Consensus 57 ~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~ 136 (325)
T cd08264 57 IPGAEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSI 136 (325)
T ss_pred ecccceeEEEEEECCCCCCCCCCCEEEECCCcCCCCChhhcCCCccccCccceeeccCCCceeeEEEcCHHHceeCCCCC
Confidence 4699999999999999998999999876421 011222222111121123444444444431 1
Q ss_pred ccccccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC
Q 010322 215 RTETNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG 292 (513)
Q Consensus 215 r~et~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~ 292 (513)
..+.... ..+...+++++..+ .-..|.+|+|+|+ |++|.+++..++..|+. |+++.+. ++++++|.
T Consensus 137 ~~~~~~~~~~~~~~a~~~l~~~------~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~-v~~~~~~-----~~~~~~g~ 204 (325)
T cd08264 137 SDELAASLPVAALTAYHALKTA------GLGPGETVVVFGASGNTGIFAVQLAKMMGAE-VIAVSRK-----DWLKEFGA 204 (325)
T ss_pred CHHHhhhhhhhhHHHHHHHHhc------CCCCCCEEEEECCCchHHHHHHHHHHHcCCe-EEEEeHH-----HHHHHhCC
Confidence 1111111 11223345544322 2346899999998 99999999999999985 6666542 34456663
Q ss_pred cceeeccc---chHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 293 VEIIYKPL---SEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 293 ~~~~~~~~---~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
. ..+... +.+.....++|+|++|++++ .+ .+.++.+. ++|..+.++.
T Consensus 205 ~-~~~~~~~~~~~l~~~~~~~d~vl~~~g~~-~~--~~~~~~l~-----~~g~~v~~g~ 254 (325)
T cd08264 205 D-EVVDYDEVEEKVKEITKMADVVINSLGSS-FW--DLSLSVLG-----RGGRLVTFGT 254 (325)
T ss_pred C-eeecchHHHHHHHHHhCCCCEEEECCCHH-HH--HHHHHhhc-----cCCEEEEEec
Confidence 1 112111 11222226799999999863 22 34455443 3566666654
|
This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00019 Score=73.37 Aligned_cols=181 Identities=22% Similarity=0.267 Sum_probs=102.2
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH------H----HHHHHhHhcCcccchhhHHHHHHHhhCc--------cc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV------K----QVVKVGQGVVGFGRNISGLFKHAISVGK--------RV 214 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv------k----~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~V 214 (513)
..|+|+++.+..+++++....+|+..+...+ - +....|...+..|...++.++.++.++. .+
T Consensus 59 ~~g~~~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~ 138 (338)
T cd08254 59 TLGHEIAGTVVEVGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPDGV 138 (338)
T ss_pred eccccccEEEEEECCCCccCCCCCEEEECCCCCCCCChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEECCCCC
Confidence 5699999999999999998899998875211 0 0001111111112222344444444433 22
Q ss_pred cccccc-cCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc
Q 010322 215 RTETNI-AAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV 293 (513)
Q Consensus 215 r~et~i-~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~ 293 (513)
..+... ...+...++.++.... .-..+.+|+|.|+|.+|.+++..+...|+. |+++.+++++.+. +.++|..
T Consensus 139 ~~~~a~~~~~~~~ta~~~l~~~~-----~~~~~~~vli~g~g~vG~~~~~la~~~G~~-V~~~~~s~~~~~~-~~~~g~~ 211 (338)
T cd08254 139 PFAQAAVATDAVLTPYHAVVRAG-----EVKPGETVLVIGLGGLGLNAVQIAKAMGAA-VIAVDIKEEKLEL-AKELGAD 211 (338)
T ss_pred CHHHhhhhcchHHHHHHHHHhcc-----CCCCCCEEEEECCcHHHHHHHHHHHHcCCE-EEEEcCCHHHHHH-HHHhCCC
Confidence 211111 1123344444432211 123688999999999999999999999986 8899999888744 4566632
Q ss_pred ceeecccc-hHHh---h--cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 294 EIIYKPLS-EMLS---C--AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 294 ~~~~~~~~-~~~~---~--l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
..+...+ ...+ . -.++|+||+|++.+..+ .+.+..+. ++|..+.++.
T Consensus 212 -~~~~~~~~~~~~~~~~~~~~~~D~vid~~g~~~~~--~~~~~~l~-----~~G~~v~~g~ 264 (338)
T cd08254 212 -EVLNSLDDSPKDKKAAGLGGGFDVIFDFVGTQPTF--EDAQKAVK-----PGGRIVVVGL 264 (338)
T ss_pred -EEEcCCCcCHHHHHHHhcCCCceEEEECCCCHHHH--HHHHHHhh-----cCCEEEEECC
Confidence 1111111 1111 1 24689999998865332 33444332 3565555543
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00017 Score=68.78 Aligned_cols=105 Identities=17% Similarity=0.243 Sum_probs=71.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH--HhCCcceeecc-cchHHhhcCCCcEEEEcCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE--ELNGVEIIYKP-LSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~--~~g~~~~~~~~-~~~~~~~l~~aDVVI~AT~ 318 (513)
++.|++|+|||- .-+|+-++..|...|++ |++++.+.--. +.. ........... ..++.+.+..|||||+|+|
T Consensus 59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~At-Vti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG 135 (197)
T cd01079 59 RLYGKTITIINRSEVVGRPLAALLANDGAR-VYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVP 135 (197)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEccC
Confidence 689999999999 66799999999999985 99997542111 100 00000000001 1126677899999999999
Q ss_pred CCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCccccc
Q 010322 319 SEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVAD 360 (513)
Q Consensus 319 s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~ 360 (513)
.+...++.++++. | .++||+++-+|+++.+.+
T Consensus 136 ~~~~~i~~d~ik~---------G-avVIDVGi~~dvd~~v~~ 167 (197)
T cd01079 136 SPNYKVPTELLKD---------G-AICINFASIKNFEPSVKE 167 (197)
T ss_pred CCCCccCHHHcCC---------C-cEEEEcCCCcCccHhHHh
Confidence 9987578888753 3 789999987777655543
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00015 Score=74.69 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=60.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCC---
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTAS--- 319 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s--- 319 (513)
.+.|++|+|||.|.||+.+++.++..|.+ |..++|+.... ..+ + ...++.+.++.+|+|+.+++.
T Consensus 142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm~-V~~~d~~~~~~-----~~~---~---~~~~l~ell~~sDvv~lh~Plt~~ 209 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRVAKIAQAFGAK-VVYYSTSGKNK-----NEE---Y---ERVSLEELLKTSDIISIHAPLNEK 209 (311)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhcCCE-EEEECCCcccc-----ccC---c---eeecHHHHhhcCCEEEEeCCCCch
Confidence 57899999999999999999999999995 99999964211 111 1 234677778899999998765
Q ss_pred CccCCChhhhhcCC
Q 010322 320 EAPLFLKDHVQDLP 333 (513)
Q Consensus 320 ~~~vi~~~~l~~~~ 333 (513)
...+|+.+.++.+.
T Consensus 210 T~~li~~~~~~~Mk 223 (311)
T PRK08410 210 TKNLIAYKELKLLK 223 (311)
T ss_pred hhcccCHHHHHhCC
Confidence 34578888887764
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00014 Score=74.64 Aligned_cols=88 Identities=15% Similarity=0.051 Sum_probs=65.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+.|++|+|||.|.||+.+++.|+..|+ +|.++||+... .+. .. .+.++.+.+..+|+|+.+.+..
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~~~~-------~~~---~~-~~~~l~ell~~aDiv~~~lp~t~~ 186 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRSYVN-------DGI---SS-IYMEPEDIMKKSDFVLISLPLTDE 186 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcc-------cCc---cc-ccCCHHHHHhhCCEEEECCCCCch
Confidence 4689999999999999999999999999 59999997421 111 10 1245677788999999998764
Q ss_pred -ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 -APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 -~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+. ...++|+++
T Consensus 187 T~~li~~~~l~~mk-------~ga~lIN~s 209 (303)
T PRK06436 187 TRGMINSKMLSLFR-------KGLAIINVA 209 (303)
T ss_pred hhcCcCHHHHhcCC-------CCeEEEECC
Confidence 3467777777653 226777775
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00021 Score=73.10 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=50.6
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
+|.|||+|.||..+++.|...|. +|+++||++++.+.+.+ .|. . ...+.+++.+....+|+||.|++.+.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~-~g~-~-~~~~~~e~~~~~~~~dvvi~~v~~~~ 71 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALAE-EGA-T-GADSLEELVAKLPAPRVVWLMVPAGE 71 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH-CCC-e-ecCCHHHHHhhcCCCCEEEEEecCCc
Confidence 69999999999999999999997 59999999999877754 342 1 11122233222234689998888763
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00017 Score=72.66 Aligned_cols=69 Identities=22% Similarity=0.446 Sum_probs=53.9
Q ss_pred eEEEEcccHHHHHHHHHHHHcCC---CeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGC---TKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~---~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
+|.|||+|.||.+++..|...|. .+|++++|++++++.+++.+++ +.+ ..+..+.+..+|+||.|++..
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g--~~~--~~~~~~~~~~aDiVilav~p~ 73 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPG--IHV--AKTIEEVISQSDLIFICVKPL 73 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCC--eEE--ECCHHHHHHhCCEEEEecCHH
Confidence 68999999999999999998884 4699999999998888776532 122 234445567899999999643
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00045 Score=70.99 Aligned_cols=159 Identities=23% Similarity=0.350 Sum_probs=92.5
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhc------hH---HH-HHHHhHhcCcccchhhHHHHH-------HHhhCcccc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILA------QV---KQ-VVKVGQGVVGFGRNISGLFKH-------AISVGKRVR 215 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlg------Qv---k~-A~~~a~~~~~~g~~L~~lf~~-------ai~v~k~Vr 215 (513)
..|+|+++.+..++++++..-+|++.+.. ++ +. .-+.|...+.++....+.|+. .+.+++.+.
T Consensus 56 ~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~p~~~~ 135 (337)
T cd08261 56 ILGHELSGEVVEVGEGVAGLKVGDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPADALLVPEGLS 135 (337)
T ss_pred ccccccEEEEEEeCCCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCCCeeeecCCCcceeEEEechheEECCCCCC
Confidence 46999999999999999989999998762 11 00 001110000000000122333 233343333
Q ss_pred ccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcce
Q 010322 216 TETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEI 295 (513)
Q Consensus 216 ~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~ 295 (513)
.+......+.++++.++..+ .-..|.+|+|.|+|.+|.++++.+...|++ |+++.++.++.. +.++++..
T Consensus 136 ~~~aa~~~~~~~a~~~~~~~------~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~-v~~~~~s~~~~~-~~~~~g~~-- 205 (337)
T cd08261 136 LDQAALVEPLAIGAHAVRRA------GVTAGDTVLVVGAGPIGLGVIQVAKARGAR-VIVVDIDDERLE-FARELGAD-- 205 (337)
T ss_pred HHHhhhhchHHHHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEECCCHHHHH-HHHHhCCC--
Confidence 22222223444444443221 124688999999999999999999999985 888888888875 44666632
Q ss_pred eecccc------hHHhhc--CCCcEEEEcCCCCc
Q 010322 296 IYKPLS------EMLSCA--ADADVVFTSTASEA 321 (513)
Q Consensus 296 ~~~~~~------~~~~~l--~~aDVVI~AT~s~~ 321 (513)
.+.+.. .+.... .++|++++|.+...
T Consensus 206 ~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g~~~ 239 (337)
T cd08261 206 DTINVGDEDVAARLRELTDGEGADVVIDATGNPA 239 (337)
T ss_pred EEecCcccCHHHHHHHHhCCCCCCEEEECCCCHH
Confidence 222221 122222 35899999987643
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00019 Score=72.11 Aligned_cols=68 Identities=34% Similarity=0.545 Sum_probs=57.4
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC---CeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGC---TKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~---~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
.++.+||+|.||.+++..|...|. .+|+++||+.+++..++++||.. . ..+..+....+|+||.|+.-
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~---~--~~~~~~~~~~advv~LavKP 72 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVV---T--TTDNQEAVEEADVVFLAVKP 72 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCc---c--cCcHHHHHhhCCEEEEEeCh
Confidence 479999999999999999999983 58999999999998899999752 1 34455667789999999865
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0003 Score=71.90 Aligned_cols=180 Identities=19% Similarity=0.274 Sum_probs=100.8
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchH-----------HHHHHHhHhcCcccchhhHHHHHHHhhCc--------
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQV-----------KQVVKVGQGVVGFGRNISGLFKHAISVGK-------- 212 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQv-----------k~A~~~a~~~~~~g~~L~~lf~~ai~v~k-------- 212 (513)
...|+|+++.+..+++++..+-+|+..++..+ .+-++.|......+...++.|+.++.++.
T Consensus 55 ~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~ 134 (330)
T cd08245 55 LVPGHEIVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPD 134 (330)
T ss_pred cccCccceEEEEEECCCCcccccCCEEEEccccCCCCCChhhhCcCcccCcCccccCcccCCccccEEEEcHHHeEECCC
Confidence 35799999999999999988889998874211 01112222211111111344444444443
Q ss_pred ccccccccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC
Q 010322 213 RVRTETNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN 291 (513)
Q Consensus 213 ~Vr~et~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g 291 (513)
.+..+.... ......++.++..+ ....+.+|+|+|+|.+|.++++.++..|+ +|+++.++.++.+.+ .+++
T Consensus 135 ~~~~~~~~~l~~~~~ta~~~l~~~------~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~-~~~g 206 (330)
T cd08245 135 GLPLAQAAPLLCAGITVYSALRDA------GPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELA-RKLG 206 (330)
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhh------CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH-HHhC
Confidence 221111111 01111223333221 23468899999999999999999999998 489999998887554 5666
Q ss_pred Ccceeecccc--hHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 292 GVEIIYKPLS--EMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 292 ~~~~~~~~~~--~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
... .+.... .......++|+||+|++++... .+.+..+. .+|..+.+.
T Consensus 207 ~~~-~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~--~~~~~~l~-----~~G~~i~~~ 256 (330)
T cd08245 207 ADE-VVDSGAELDEQAAAGGADVILVTVVSGAAA--EAALGGLR-----RGGRIVLVG 256 (330)
T ss_pred CcE-EeccCCcchHHhccCCCCEEEECCCcHHHH--HHHHHhcc-----cCCEEEEEC
Confidence 321 111111 1111124689999998765433 33444433 345555554
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00029 Score=65.91 Aligned_cols=99 Identities=24% Similarity=0.313 Sum_probs=66.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec------------------cc---c
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK------------------PL---S 301 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~------------------~~---~ 301 (513)
.+...+|+|+|+|..|..++..|...|++ +++.+..+++...+... +...+.+. +. .
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~-v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAE-VVVPDERPERLRQLESL-GAYFIEVDYEDHLERKDFDKADYYEHPESYES 94 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-E-EEEEESSHHHHHHHHHT-TTEESEETTTTTTTSB-CCHHHCHHHCCHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCE-EEeccCCHHHHHhhhcc-cCceEEEcccccccccccchhhhhHHHHHhHH
Confidence 45678999999999999999999999995 89999998887665443 32212221 11 1
Q ss_pred hHHhhcCCCcEEEEcCC---CCc-cCCChhhhhcCCchhhhcCCcEEEEeccC
Q 010322 302 EMLSCAADADVVFTSTA---SEA-PLFLKDHVQDLPPVEAAVGGLRLFIDISV 350 (513)
Q Consensus 302 ~~~~~l~~aDVVI~AT~---s~~-~vi~~~~l~~~~~~~~~~~g~~viiDlav 350 (513)
.+.+.+..+|+||.+.- ... .+++.++++.+. +..+++|++.
T Consensus 95 ~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~-------~gsvIvDis~ 140 (168)
T PF01262_consen 95 NFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMK-------PGSVIVDISC 140 (168)
T ss_dssp HHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSS-------TTEEEEETTG
T ss_pred HHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccC-------CCceEEEEEe
Confidence 34556778999997542 223 378889988764 3389999975
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0002 Score=73.51 Aligned_cols=73 Identities=23% Similarity=0.235 Sum_probs=55.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
..++|+|||+|.||..++..|...|. .+|++++|++++.+. +.+.+.. .. ...+..+.+.++|+||.||+...
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~-a~~~g~~-~~--~~~~~~~~~~~aDvViiavp~~~ 78 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRAR-ARELGLG-DR--VTTSAAEAVKGADLVILCVPVGA 78 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHH-HHhCCCC-ce--ecCCHHHHhcCCCEEEECCCHHH
Confidence 34689999999999999999999886 479999999987744 4444421 11 12344556789999999998754
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00023 Score=70.22 Aligned_cols=71 Identities=21% Similarity=0.375 Sum_probs=55.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcC---CCeEEEEeC-CHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKG---CTKMVVVNR-SEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G---~~~V~v~nR-s~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
+.+|+|||+|.||..++..+...| ...|++++| ++++++.+++.++. . ...+..+.+.++|+||.||+...
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~DiViiavp~~~ 78 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNV---S--TTTDWKQHVTSVDTIVLAMPPSA 78 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCc---E--EeCChHHHHhcCCEEEEecCHHH
Confidence 578999999999999999998876 334788888 47888888877652 2 12445566778999999999753
|
|
| >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00034 Score=72.12 Aligned_cols=161 Identities=16% Similarity=0.166 Sum_probs=95.9
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHH----------HHHHHhHhcCcccchhhHHHHHHHhhCc----------
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVK----------QVVKVGQGVVGFGRNISGLFKHAISVGK---------- 212 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk----------~A~~~a~~~~~~g~~L~~lf~~ai~v~k---------- 212 (513)
..|+|+++.+..++++.+..-+|+......+. +..+.|......|..-++.|++++.++.
T Consensus 57 ~~g~e~~G~V~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~iP~ 136 (345)
T cd08260 57 VPGHEFAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVRLPD 136 (345)
T ss_pred eeccceeEEEEEECCCCccCCCCCEEEECCCCCCCCCccccCcCcccCCCCcccccCCCCcceeEEEcccccCceEECCC
Confidence 57999999999999999888999988763221 1122222211111111455555555543
Q ss_pred ccccccccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC
Q 010322 213 RVRTETNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN 291 (513)
Q Consensus 213 ~Vr~et~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g 291 (513)
.+..+.... ..+..++++++.. .. ....+.+|+|.|+|.+|.++++.++..|+. |+++.++.++.+. +.++|
T Consensus 137 ~~~~~~aa~l~~~~~ta~~~l~~----~~-~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~-vi~~~~~~~~~~~-~~~~g 209 (345)
T cd08260 137 DVDFVTAAGLGCRFATAFRALVH----QA-RVKPGEWVAVHGCGGVGLSAVMIASALGAR-VIAVDIDDDKLEL-ARELG 209 (345)
T ss_pred CCCHHHhhhhccchHHHHHHHHH----cc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEEeCCHHHHHH-HHHhC
Confidence 121111111 1233444544321 11 234689999999999999999999999985 8888888888744 46676
Q ss_pred Ccceeecccc---hHHh----hc-CCCcEEEEcCCCCcc
Q 010322 292 GVEIIYKPLS---EMLS----CA-ADADVVFTSTASEAP 322 (513)
Q Consensus 292 ~~~~~~~~~~---~~~~----~l-~~aDVVI~AT~s~~~ 322 (513)
.. .+.+.. +... .. ..+|++|+|++++..
T Consensus 210 ~~--~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~ 246 (345)
T cd08260 210 AV--ATVNASEVEDVAAAVRDLTGGGAHVSVDALGIPET 246 (345)
T ss_pred CC--EEEccccchhHHHHHHHHhCCCCCEEEEcCCCHHH
Confidence 42 222221 2111 11 269999999986443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty |
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00021 Score=72.35 Aligned_cols=71 Identities=18% Similarity=0.322 Sum_probs=55.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCC---CeEEEEeCCH-HHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGC---TKMVVVNRSE-ERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~---~~V~v~nRs~-~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
..+|.|||+|.||..+++.|...|. .+|+++||+. ++++.++..++. . ...+..+.+..+|+||.|++...
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~---~--~~~~~~e~~~~aDvVilav~p~~ 77 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGV---K--GTHNKKELLTDANILFLAMKPKD 77 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCc---e--EeCCHHHHHhcCCEEEEEeCHHH
Confidence 4689999999999999999998872 5799999976 466777776653 2 22344555678999999998754
|
|
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00043 Score=71.39 Aligned_cols=160 Identities=13% Similarity=0.215 Sum_probs=93.8
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH---------H-HHHHHhHhcCc-ccchhhHHHHHHHhhCcc--------
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV---------K-QVVKVGQGVVG-FGRNISGLFKHAISVGKR-------- 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv---------k-~A~~~a~~~~~-~g~~L~~lf~~ai~v~k~-------- 213 (513)
..|||+++.+.++++++....+|+..+.... . .-+..|...++ .|...++.|++++.++..
T Consensus 57 ~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp 136 (345)
T cd08286 57 ILGHEGVGVVEEVGSAVTNFKVGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKLP 136 (345)
T ss_pred eecccceEEEEEeccCccccCCCCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEECC
Confidence 5799999999999999988889998876321 0 01111111111 111123455555544432
Q ss_pred --ccccccccC-CCchHHHHHH-HHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 010322 214 --VRTETNIAA-GAVSVSSAAV-ELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEE 289 (513)
Q Consensus 214 --Vr~et~i~~-~~~Sva~~Av-~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~ 289 (513)
+........ .+...++.+. ..+ ....+.+|+|.|+|.+|.++++.++..|..+|++++++..+. .++.+
T Consensus 137 ~~~~~~~aa~l~~~~~ta~~~~~~~~------~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~-~~~~~ 209 (345)
T cd08286 137 EGVDEEAAVMLSDILPTGYECGVLNG------KVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRL-EVAKK 209 (345)
T ss_pred CCCCHHHhhhccchhHHHHHHHHhhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHH
Confidence 111111110 1122333321 111 234689999999999999999999999955688899988776 56677
Q ss_pred hCCcceeecccc--h----HHhhc--CCCcEEEEcCCCCc
Q 010322 290 LNGVEIIYKPLS--E----MLSCA--ADADVVFTSTASEA 321 (513)
Q Consensus 290 ~g~~~~~~~~~~--~----~~~~l--~~aDVVI~AT~s~~ 321 (513)
+|.. .+.+.. + +.... .++|+||+|++.+.
T Consensus 210 ~g~~--~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~~~ 247 (345)
T cd08286 210 LGAT--HTVNSAKGDAIEQVLELTDGRGVDVVIEAVGIPA 247 (345)
T ss_pred hCCC--ceeccccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence 7742 122211 1 22222 36999999997643
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00025 Score=72.13 Aligned_cols=69 Identities=29% Similarity=0.386 Sum_probs=53.8
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.+|.|||+|.||..++..|...|. +|+++||++++.+.+.. .+. . ..++..+.+.++|+||.|++.+..
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~-~g~---~--~~~~~~e~~~~~d~vi~~vp~~~~ 71 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNPEAVAEVIA-AGA---E--TASTAKAVAEQCDVIITMLPNSPH 71 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHH-CCC---e--ecCCHHHHHhcCCEEEEeCCCHHH
Confidence 479999999999999999999997 59999999988866543 232 1 223455566789999999986543
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00025 Score=73.38 Aligned_cols=75 Identities=28% Similarity=0.335 Sum_probs=56.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC------Ccc--eeecccchHHhhcCCCcEEEEcC
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN------GVE--IIYKPLSEMLSCAADADVVFTST 317 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g------~~~--~~~~~~~~~~~~l~~aDVVI~AT 317 (513)
..+|.|||+|.||..++..|...|. +|++++|++++.+.+..... +.. ..+...++..+.+..+|+||.|+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v 82 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGV-PVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAV 82 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEEC
Confidence 4589999999999999999999997 59999999988877765310 100 00223345666678999999999
Q ss_pred CCCc
Q 010322 318 ASEA 321 (513)
Q Consensus 318 ~s~~ 321 (513)
++..
T Consensus 83 ~~~~ 86 (328)
T PRK14618 83 PSKA 86 (328)
T ss_pred chHH
Confidence 9874
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00019 Score=74.25 Aligned_cols=71 Identities=21% Similarity=0.143 Sum_probs=56.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+.+++|.|||+|.||.+++..|+..|. +|++.+|+..+..+.+...|. .. .+..+++..+|+||.+++..
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~r~~~~s~~~A~~~G~---~~---~s~~eaa~~ADVVvLaVPd~ 84 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGLREGSKSWKKAEADGF---EV---LTVAEAAKWADVIMILLPDE 84 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEECCchhhHHHHHHCCC---ee---CCHHHHHhcCCEEEEcCCHH
Confidence 4678999999999999999999999998 588888876666666666542 22 25566778999999999865
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00022 Score=73.31 Aligned_cols=73 Identities=25% Similarity=0.448 Sum_probs=55.8
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHHhCCc------ceeecccchHHhhcCCCcEEEEcCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCT-KMVVVNRSEERVAAICEELNGV------EIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~-~V~v~nRs~~ra~~la~~~g~~------~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
++|.|||+|.+|..++..|...|.. +|+++|+++++++.++..+... ...+. ..+ .+.+.++|+||.|++.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~-~~~-~~~l~~aDIVIitag~ 78 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK-AGD-YSDCKDADIVVITAGA 78 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE-cCC-HHHhCCCCEEEEccCC
Confidence 3799999999999999999999974 8999999999988887765211 11111 122 2347899999999998
Q ss_pred Cc
Q 010322 320 EA 321 (513)
Q Consensus 320 ~~ 321 (513)
|.
T Consensus 79 ~~ 80 (306)
T cd05291 79 PQ 80 (306)
T ss_pred CC
Confidence 63
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00015 Score=73.69 Aligned_cols=67 Identities=21% Similarity=0.287 Sum_probs=53.3
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
+|.|||+|.||..++..|...|. +|+++||++++.+.+.+. +. ....+..+.+.++|+||.|++.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~~~-g~-----~~~~~~~~~~~~aDivi~~vp~~~ 67 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELLAA-GA-----VTAETARQVTEQADVIFTMVPDSP 67 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHC-CC-----cccCCHHHHHhcCCEEEEecCCHH
Confidence 48999999999999999999997 599999999988666542 32 122345566789999999998753
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >COG0281 SfcA Malic enzyme [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00055 Score=71.96 Aligned_cols=248 Identities=20% Similarity=0.208 Sum_probs=135.7
Q ss_pred cCCCCHHHHhhhcC--CCCChHHHHHHHhccCCCcceEEeeecCeeEEEEEeccccccHHHHHHHHHHhcCCChhhhhhH
Q 010322 72 VHTAPVEMREKLAI--PEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEH 149 (513)
Q Consensus 72 hk~apv~~RE~~a~--~~~~~~~~l~~l~~~~~i~e~viLsTCNR~EiY~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (513)
|.+-|+...|-|++ ++. .-+.++++.+.+.-.. +..+|--.+.+.++-.. +--+-+| .-..|++..+-.-.
T Consensus 36 ~~~~~~~~~~dl~l~YTPg-Va~~~~~i~~d~~~~~----~yt~~~n~vaVvTDgta-VLGLGni-Gp~ag~pVmeGKa~ 108 (432)
T COG0281 36 YPTVPLHTQEDLPLAYTPG-VAEACKAISEDPRKAY----SYTARGNLVAVVTDGTA-VLGLGNI-GPLAGKPVMEGKAV 108 (432)
T ss_pred EEcccccCHhhcCcccCCc-hHHHHHHHHhCcchhh----hcCCCCceEEEEECCce-eeccccc-ccccCcchhhhHHH
Confidence 56677777777765 332 3345555554432211 44455444444432111 0000001 11234555444444
Q ss_pred HHHhc-CCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhh-HHHHHHHhhCcccccccccc------
Q 010322 150 RFLLY-NKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNIS-GLFKHAISVGKRVRTETNIA------ 221 (513)
Q Consensus 150 ~~~~~-G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~-~lf~~ai~v~k~Vr~et~i~------ 221 (513)
+|... |.+++--...++ +++= +-+..+.. +-.+-|..|+ --|.+++.+-.+.+.+..|.
T Consensus 109 Lfk~faGid~~pI~ld~~---------~~~e---i~~~Vkal-~p~FgginLedi~ap~cf~ie~~lr~~~~IPvFhDDq 175 (432)
T COG0281 109 LFKAFAGIDVLPIELDVG---------TNNE---IIEFVKAL-EPTFGGINLEDIDAPRCFAIEERLRYRMNIPVFHDDQ 175 (432)
T ss_pred HHHHhcCCCceeeEeeCC---------ChHH---HHHHHHHh-hhcCCCcceeecccchhhHHHHHHhhcCCCCcccccc
Confidence 44332 344333333333 2222 22222222 1222333443 34556666666666666654
Q ss_pred CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCC--eEEEEeCC----HHHH--------HHHH
Q 010322 222 AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCT--KMVVVNRS----EERV--------AAIC 287 (513)
Q Consensus 222 ~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~--~V~v~nRs----~~ra--------~~la 287 (513)
+++..|..+++--+-+..+ ..+...+|++.|+|..|.+++..|.+.|++ +|+++||. .++- ..++
T Consensus 176 qGTaiv~lA~llnalk~~g-k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a 254 (432)
T COG0281 176 QGTAIVTLAALLNALKLTG-KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKA 254 (432)
T ss_pred cHHHHHHHHHHHHHHHHhC-CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHH
Confidence 3555555555543444333 578899999999999999999999999997 89999985 1111 1112
Q ss_pred H-HhCCcceeecccchHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC-CCCcc
Q 010322 288 E-ELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR-NVGSC 357 (513)
Q Consensus 288 ~-~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr-didp~ 357 (513)
. ..+ .+.. ...+.++||.|-+++. .+|++++++.+.+ ..+++-||.|- .+.|+
T Consensus 255 ~~~~~-------~~~~-~~~~~~adv~iG~S~~--G~~t~e~V~~Ma~-------~PiIfalaNP~pEi~Pe 309 (432)
T COG0281 255 IEDTG-------ERTL-DLALAGADVLIGVSGV--GAFTEEMVKEMAK-------HPIIFALANPTPEITPE 309 (432)
T ss_pred Hhhhc-------cccc-cccccCCCEEEEcCCC--CCcCHHHHHHhcc-------CCEEeecCCCCccCCHH
Confidence 1 111 1111 2367899999999888 6788999988752 37888888884 44443
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00019 Score=74.06 Aligned_cols=87 Identities=15% Similarity=0.174 Sum_probs=64.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+.|++|+|||.|.||+.+++.|+..|++ |..++|+... ... ..+.++.+.+..+|+|+.+++..
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~~~~~------~~~------~~~~~l~ell~~sDiv~l~~Plt~~ 210 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEHKGAS------VCR------EGYTPFEEVLKQADIVTLHCPLTET 210 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCCccc------ccc------cccCCHHHHHHhCCEEEEcCCCChH
Confidence 46899999999999999999999999995 8888876321 111 12345777788999999987654
Q ss_pred -ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 -APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 -~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+|+.+.+..+.+ ..++|..+
T Consensus 211 T~~li~~~~l~~mk~-------ga~lIN~a 233 (314)
T PRK06932 211 TQNLINAETLALMKP-------TAFLINTG 233 (314)
T ss_pred HhcccCHHHHHhCCC-------CeEEEECC
Confidence 46788888877642 26677665
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00016 Score=68.57 Aligned_cols=73 Identities=21% Similarity=0.358 Sum_probs=47.0
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC----------Ccc--------eeecccchHHhhcCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN----------GVE--------IIYKPLSEMLSCAAD 309 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g----------~~~--------~~~~~~~~~~~~l~~ 309 (513)
+|.|||+|.||..++..+...|. +|++++++++.++...+.+. ... ..+....++.++. +
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~ 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence 68999999999999999999998 59999999886533222211 000 0111234555555 9
Q ss_pred CcEEEEcCCCCcc
Q 010322 310 ADVVFTSTASEAP 322 (513)
Q Consensus 310 aDVVI~AT~s~~~ 322 (513)
+|+||+|++-...
T Consensus 79 adlViEai~E~l~ 91 (180)
T PF02737_consen 79 ADLVIEAIPEDLE 91 (180)
T ss_dssp ESEEEE-S-SSHH
T ss_pred hheehhhccccHH
Confidence 9999999876543
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00024 Score=73.54 Aligned_cols=75 Identities=20% Similarity=0.287 Sum_probs=52.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh----------CCc----ceeecccchHHhhcCCCc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL----------NGV----EIIYKPLSEMLSCAADAD 311 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~----------g~~----~~~~~~~~~~~~~l~~aD 311 (513)
-++|.|||+|.||..++..+...|.. |+++|++++..+.....+ +.. ...+....++.+.+.+||
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aD 85 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADAD 85 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCC
Confidence 36899999999999999999999985 999999987654332211 100 001112245666778999
Q ss_pred EEEEcCCCCc
Q 010322 312 VVFTSTASEA 321 (513)
Q Consensus 312 VVI~AT~s~~ 321 (513)
+||+|.+-..
T Consensus 86 lViEavpE~l 95 (321)
T PRK07066 86 FIQESAPERE 95 (321)
T ss_pred EEEECCcCCH
Confidence 9999977543
|
|
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00045 Score=71.29 Aligned_cols=161 Identities=16% Similarity=0.276 Sum_probs=94.0
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHH----------HHHHHhHhcCcccchhhHHHHHHHhhCc--------cc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVK----------QVVKVGQGVVGFGRNISGLFKHAISVGK--------RV 214 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk----------~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~V 214 (513)
..|+|+++.+..++.+++...+|+..+.-..+ +-.+.|...++.|....+.|++++.++. .+
T Consensus 60 ~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~lP~~~ 139 (341)
T cd05281 60 IFGHEFAGEVVEVGEGVTRVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKNDKDI 139 (341)
T ss_pred ccccceEEEEEEECCCCCCCCCCCEEEECCccCCCCChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEECcCCC
Confidence 47999999999999998888889988653110 0011222222222112233443333332 22
Q ss_pred cccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcc
Q 010322 215 RTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVE 294 (513)
Q Consensus 215 r~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~ 294 (513)
..+......+.++++.++. + ...+|.+|+|.|+|.+|.++++.++..|+.+|++++++.++. .+++++|..
T Consensus 140 ~~~~a~~~~~~~~a~~~~~-~------~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~-~~~~~~g~~- 210 (341)
T cd05281 140 PPEIASIQEPLGNAVHTVL-A------GDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRL-ELAKKMGAD- 210 (341)
T ss_pred CHHHhhhhhHHHHHHHHHH-h------cCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHHhCcc-
Confidence 2221111223333333322 1 124689999999999999999999999986688887887776 677777642
Q ss_pred eeeccc-chH---Hhhc--CCCcEEEEcCCCCcc
Q 010322 295 IIYKPL-SEM---LSCA--ADADVVFTSTASEAP 322 (513)
Q Consensus 295 ~~~~~~-~~~---~~~l--~~aDVVI~AT~s~~~ 322 (513)
..+... .+. .+.. .++|+||+|++++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~vd~vld~~g~~~~ 244 (341)
T cd05281 211 VVINPREEDVVEVKSVTDGTGVDVVLEMSGNPKA 244 (341)
T ss_pred eeeCcccccHHHHHHHcCCCCCCEEEECCCCHHH
Confidence 111111 122 2222 369999999987543
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00019 Score=72.92 Aligned_cols=75 Identities=20% Similarity=0.351 Sum_probs=55.2
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC----------Ccc--------eeecccchHHhhcC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN----------GVE--------IIYKPLSEMLSCAA 308 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g----------~~~--------~~~~~~~~~~~~l~ 308 (513)
++|.|||+|.||..++..|...|.. |+++|+++++.+.+.+... ... ..+....+..+.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQ-TTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 5799999999999999999999985 9999999988766543210 000 00112345666788
Q ss_pred CCcEEEEcCCCCcc
Q 010322 309 DADVVFTSTASEAP 322 (513)
Q Consensus 309 ~aDVVI~AT~s~~~ 322 (513)
++|+||+|++....
T Consensus 81 ~aD~Vi~avpe~~~ 94 (288)
T PRK09260 81 DADLVIEAVPEKLE 94 (288)
T ss_pred CCCEEEEeccCCHH
Confidence 99999999998753
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00041 Score=70.29 Aligned_cols=91 Identities=20% Similarity=0.337 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEEcccHH-HHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhh
Q 010322 228 SSAAVELALMKLPESSHATARMLVIGAGKM-GKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSC 306 (513)
Q Consensus 228 a~~Av~la~~~~~~~~l~g~~VlVIGaG~m-G~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~ 306 (513)
+.+.+++.+. ++ -++.|++|+|||.|.+ |+.++..|...|++ |+++.... .++.+.
T Consensus 142 p~aii~lL~~-~~-i~l~Gk~vvViGrs~iVGkPla~lL~~~~at-Vt~~hs~t--------------------~~l~~~ 198 (285)
T PRK14189 142 PYGVMKMLES-IG-IPLRGAHAVVIGRSNIVGKPMAMLLLQAGAT-VTICHSKT--------------------RDLAAH 198 (285)
T ss_pred HHHHHHHHHH-cC-CCCCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEecCCC--------------------CCHHHH
Confidence 4455566554 32 4789999999999888 99999999999985 88865421 234556
Q ss_pred cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 307 AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 307 l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
++.||+||+|+|.+.. ++.++++. | .++||+++.+
T Consensus 199 ~~~ADIVV~avG~~~~-i~~~~ik~---------g-avVIDVGin~ 233 (285)
T PRK14189 199 TRQADIVVAAVGKRNV-LTADMVKP---------G-ATVIDVGMNR 233 (285)
T ss_pred hhhCCEEEEcCCCcCc-cCHHHcCC---------C-CEEEEccccc
Confidence 7899999999998864 67777643 3 6899998654
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00018 Score=76.04 Aligned_cols=72 Identities=24% Similarity=0.411 Sum_probs=52.0
Q ss_pred EEEEcccHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHHhCCccee-----ecccchHHhhcCCCcEEEEcCCCC
Q 010322 249 MLVIGAGKMGKLVIKHLVAKGCT-KMVVVNRSEERVAAICEELNGVEII-----YKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 249 VlVIGaG~mG~~ia~~L~~~G~~-~V~v~nRs~~ra~~la~~~g~~~~~-----~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
|+|+|+|.+|+.+++.|...+.. +|++.+|+.++++.+++.+....+. +...+++.+.+.++|+||+|++..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 78999999999999999988654 8999999999998888763221122 122234667789999999999764
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00043 Score=68.53 Aligned_cols=86 Identities=13% Similarity=0.260 Sum_probs=69.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhC----CcceeecccchHHhhcCCCcEEEEcCCC
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAK-G-CTKMVVVNRSEERVAAICEELN----GVEIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~-G-~~~V~v~nRs~~ra~~la~~~g----~~~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
.....++|+|..+-.......+. . .++|.++||+.++++++|+.+. ...+.+.+++.+.+++..+|||+.||.+
T Consensus 138 S~vL~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atls 217 (333)
T KOG3007|consen 138 SCVLTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLS 217 (333)
T ss_pred ceEEEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecccc
Confidence 34567789999999888755543 3 6899999999999999998653 2245667778888999999999999999
Q ss_pred CccCCChhhhhc
Q 010322 320 EAPLFLKDHVQD 331 (513)
Q Consensus 320 ~~~vi~~~~l~~ 331 (513)
..|++-.+++.+
T Consensus 218 tePilfgewlkp 229 (333)
T KOG3007|consen 218 TEPILFGEWLKP 229 (333)
T ss_pred CCceeeeeeecC
Confidence 999887777754
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0002 Score=66.39 Aligned_cols=70 Identities=20% Similarity=0.143 Sum_probs=51.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
+.+++|.|||.|..|.+.+..|+..|+ +|+|..|...+..+.|++-|. .+. +..++++.+|+|+..+|..
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~-~V~Vglr~~s~s~~~A~~~Gf---~v~---~~~eAv~~aDvV~~L~PD~ 71 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGV-NVIVGLREGSASWEKAKADGF---EVM---SVAEAVKKADVVMLLLPDE 71 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC--EEEEEE-TTCHHHHHHHHTT----ECC---EHHHHHHC-SEEEE-S-HH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCC-CEEEEecCCCcCHHHHHHCCC---eec---cHHHHHhhCCEEEEeCChH
Confidence 368999999999999999999999999 599999987756677777653 332 4556677999999999875
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00026 Score=76.92 Aligned_cols=74 Identities=22% Similarity=0.311 Sum_probs=55.7
Q ss_pred EEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC-Ccce-eecccchHHhhcCCCcEEEEcCCCCccC
Q 010322 249 MLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN-GVEI-IYKPLSEMLSCAADADVVFTSTASEAPL 323 (513)
Q Consensus 249 VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g-~~~~-~~~~~~~~~~~l~~aDVVI~AT~s~~~v 323 (513)
|.|||.|.||..++..|...|. +|+++||++++.+.+.+... +..+ ......++.+.+..+|+||.|++.+.++
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v 77 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPV 77 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHH
Confidence 7899999999999999999998 59999999999988887532 1001 1122334444456789999999887654
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00027 Score=73.18 Aligned_cols=91 Identities=16% Similarity=0.272 Sum_probs=68.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCC---
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTAS--- 319 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s--- 319 (513)
++.|+++.|||.|.||+++++.++..|.+ |..++|++. .+..+.++ ..+.+ +.+.++.+|+|+...|.
T Consensus 143 ~l~gktvGIiG~GrIG~avA~r~~~Fgm~-v~y~~~~~~--~~~~~~~~---~~y~~---l~ell~~sDii~l~~Plt~~ 213 (324)
T COG1052 143 DLRGKTLGIIGLGRIGQAVARRLKGFGMK-VLYYDRSPN--PEAEKELG---ARYVD---LDELLAESDIISLHCPLTPE 213 (324)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCCCC--hHHHhhcC---ceecc---HHHHHHhCCEEEEeCCCChH
Confidence 67899999999999999999999988985 999999864 22233332 23333 66677899999988665
Q ss_pred CccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 320 EAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 320 ~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
+..+|+.+.++.+. ...++|..+
T Consensus 214 T~hLin~~~l~~mk-------~ga~lVNta 236 (324)
T COG1052 214 TRHLINAEELAKMK-------PGAILVNTA 236 (324)
T ss_pred HhhhcCHHHHHhCC-------CCeEEEECC
Confidence 45688888887763 236777765
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00052 Score=71.52 Aligned_cols=168 Identities=14% Similarity=0.118 Sum_probs=97.3
Q ss_pred cCC--ceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccch--hhHHHHHH--HhhCcccccc-cc-ccCCCc
Q 010322 154 YNK--DATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRN--ISGLFKHA--ISVGKRVRTE-TN-IAAGAV 225 (513)
Q Consensus 154 ~G~--eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~--L~~lf~~a--i~v~k~Vr~e-t~-i~~~~~ 225 (513)
.|+ ++++.+..|+++++...+|+....- +.+..+ .+.-.... +.++..+..+ .. ....+.
T Consensus 76 ~G~~~~~~G~v~~vg~~v~~~~~Gd~V~~~------------~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~ 143 (348)
T PLN03154 76 PGQRIEGFGVSKVVDSDDPNFKPGDLISGI------------TGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAG 143 (348)
T ss_pred CCCeeEeeEEEEEEecCCCCCCCCCEEEec------------CCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHH
Confidence 576 7788999999999989999987521 111111 00000000 1112222221 11 111233
Q ss_pred hHHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc--ch
Q 010322 226 SVSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL--SE 302 (513)
Q Consensus 226 Sva~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~--~~ 302 (513)
.+++.++... . ...+|++|+|.|+ |++|.++++.++..|++ |+++.++.++.+.+..++|.. ..+... ++
T Consensus 144 ~TA~~al~~~---~--~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~-Vi~~~~~~~k~~~~~~~lGa~-~vi~~~~~~~ 216 (348)
T PLN03154 144 FTAYAGFYEV---C--SPKKGDSVFVSAASGAVGQLVGQLAKLHGCY-VVGSAGSSQKVDLLKNKLGFD-EAFNYKEEPD 216 (348)
T ss_pred HHHHHHHHHh---c--CCCCCCEEEEecCccHHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHhcCCC-EEEECCCccc
Confidence 3444443211 1 2347899999999 99999999999999995 888888888875444467752 222211 12
Q ss_pred HHhhc-----CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 303 MLSCA-----ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 303 ~~~~l-----~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
..+.+ .++|+||+|++.. .+ ...+..+. ++|+.++++.
T Consensus 217 ~~~~i~~~~~~gvD~v~d~vG~~-~~--~~~~~~l~-----~~G~iv~~G~ 259 (348)
T PLN03154 217 LDAALKRYFPEGIDIYFDNVGGD-ML--DAALLNMK-----IHGRIAVCGM 259 (348)
T ss_pred HHHHHHHHCCCCcEEEEECCCHH-HH--HHHHHHhc-----cCCEEEEECc
Confidence 22211 3689999999864 22 34455443 4677777764
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00021 Score=77.56 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=54.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhc---CCCcEEEEcCCCCccC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCA---ADADVVFTSTASEAPL 323 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l---~~aDVVI~AT~s~~~v 323 (513)
.+|.|||.|.||..++..|...|. +|+++||++++.+.+.+........+....++.+.+ ..+|+||.+.+.+.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v 80 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAV 80 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence 369999999999999999999998 599999999998888764211001122334444444 3589888887776554
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0003 Score=68.68 Aligned_cols=99 Identities=22% Similarity=0.312 Sum_probs=65.6
Q ss_pred CeEEEEc-ccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh----CC--cceeecccchHHhhcCCCcEEEEcCCC
Q 010322 247 ARMLVIG-AGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL----NG--VEIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 247 ~~VlVIG-aG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~----g~--~~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
++|.||| +|.||..++..|...|. +|++++|++++++.++..+ +. ....+. ..+..+.+..+|+||.|++.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~-~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~-~~~~~ea~~~aDvVilavp~ 78 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN-KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVT-GADNAEAAKRADVVILAVPW 78 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC-EEEEEEcCHHHHHHHHHHHHhhccccCCCceEE-EeChHHHHhcCCEEEEECCH
Confidence 3699997 89999999999999985 6999999999987776643 11 000111 12334567789999999998
Q ss_pred CccCCChhhhhcCCchhhhcCCcEEEEeccCCCCC
Q 010322 320 EAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNV 354 (513)
Q Consensus 320 ~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdi 354 (513)
... .+.++.+.+. ..+ .++||+..|-+.
T Consensus 79 ~~~---~~~l~~l~~~---l~~-~vvI~~~ngi~~ 106 (219)
T TIGR01915 79 DHV---LKTLESLRDE---LSG-KLVISPVVPLAS 106 (219)
T ss_pred HHH---HHHHHHHHHh---ccC-CEEEEeccCcee
Confidence 643 2222221110 123 689999766443
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0011 Score=67.56 Aligned_cols=168 Identities=18% Similarity=0.215 Sum_probs=95.7
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccccCCCchHHHHHH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAV 232 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~~~~~Sva~~Av 232 (513)
..|+|+++.+..++++++.+.+|+..+... .|..+.+..---...++++... .+......+...+++++
T Consensus 63 ~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~----------~g~~~s~~~v~~~~~~~ip~~~-~~~a~l~~~~~ta~~~l 131 (329)
T cd08250 63 DCGFEGVGEVVAVGEGVTDFKVGDAVATMS----------FGAFAEYQVVPARHAVPVPELK-PEVLPLLVSGLTASIAL 131 (329)
T ss_pred ccCceeEEEEEEECCCCCCCCCCCEEEEec----------CcceeEEEEechHHeEECCCCc-chhhhcccHHHHHHHHH
Confidence 579999999999999998888999887531 1222221111001122223211 11111112333444443
Q ss_pred HHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc-hHHhh----
Q 010322 233 ELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS-EMLSC---- 306 (513)
Q Consensus 233 ~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~-~~~~~---- 306 (513)
... . ...+|.+|+|+|+ |.+|.++++.+...|+. |+++.++.++...+ ..+|.. ..+...+ +....
T Consensus 132 ~~~----~-~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~-v~~~~~~~~~~~~~-~~~g~~-~v~~~~~~~~~~~~~~~ 203 (329)
T cd08250 132 EEV----G-EMKSGETVLVTAAAGGTGQFAVQLAKLAGCH-VIGTCSSDEKAEFL-KSLGCD-RPINYKTEDLGEVLKKE 203 (329)
T ss_pred HHh----c-CCCCCCEEEEEeCccHHHHHHHHHHHHcCCe-EEEEeCcHHHHHHH-HHcCCc-eEEeCCCccHHHHHHHh
Confidence 221 1 2346899999995 99999999999999985 88888888877444 667631 1111111 11111
Q ss_pred -cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 307 -AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 307 -l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
-.+.|+||+|++.. .+ ...+..+. .+|..+.++
T Consensus 204 ~~~~vd~v~~~~g~~-~~--~~~~~~l~-----~~g~~v~~g 237 (329)
T cd08250 204 YPKGVDVVYESVGGE-MF--DTCVDNLA-----LKGRLIVIG 237 (329)
T ss_pred cCCCCeEEEECCcHH-HH--HHHHHHhc-----cCCeEEEEe
Confidence 14689999998862 22 33444432 245555554
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00029 Score=72.96 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=62.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+.|++|.|||+|.||+.+++.|...|.+ |..+|+...+. .+...+ +...+++.+.+..+|+|+..++..
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~~~~~~--~~~~~~-----~~~~~~Ld~lL~~sDiv~lh~PlT~e 210 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDPYSPRE--RAGVDG-----VVGVDSLDELLAEADILTLHLPLTPE 210 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECCCCchh--hhcccc-----ceecccHHHHHhhCCEEEEcCCCCcc
Confidence 46799999999999999999999999995 99999933322 111111 223466788889999999987664
Q ss_pred -ccCCChhhhhcCC
Q 010322 321 -APLFLKDHVQDLP 333 (513)
Q Consensus 321 -~~vi~~~~l~~~~ 333 (513)
..+++.+.+..+.
T Consensus 211 T~g~i~~~~~a~MK 224 (324)
T COG0111 211 TRGLINAEELAKMK 224 (324)
T ss_pred hhcccCHHHHhhCC
Confidence 4578888887653
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00029 Score=73.42 Aligned_cols=78 Identities=24% Similarity=0.373 Sum_probs=56.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH---------------------HHHHHHHHHhC----Ccceeec
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE---------------------ERVAAICEELN----GVEIIYK 298 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~---------------------~ra~~la~~~g----~~~~~~~ 298 (513)
+.+++|+|||+|++|..++.+|...|+.+|+++|++. .|++.+++.+. ...+...
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 5789999999999999999999999999999999863 24444444332 2112211
Q ss_pred c----cchHHhhcCCCcEEEEcCCCCc
Q 010322 299 P----LSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 299 ~----~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
. .+++.+.+.++|+||+||....
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid~~D~~~ 128 (338)
T PRK12475 102 VTDVTVEELEELVKEVDLIIDATDNFD 128 (338)
T ss_pred eccCCHHHHHHHhcCCCEEEEcCCCHH
Confidence 1 1345667889999999997754
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00055 Score=69.36 Aligned_cols=91 Identities=19% Similarity=0.337 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEEcccH-HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhh
Q 010322 228 SSAAVELALMKLPESSHATARMLVIGAGK-MGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSC 306 (513)
Q Consensus 228 a~~Av~la~~~~~~~~l~g~~VlVIGaG~-mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~ 306 (513)
+.+.+++.+. ++ .++.|++|+|||.|. +|+.++..|...|++ |+++++.. .++.+.
T Consensus 143 p~av~~ll~~-~~-i~l~Gk~vvViGrs~iVG~Pla~lL~~~~at-Vtv~hs~T--------------------~~l~~~ 199 (285)
T PRK10792 143 PRGIMTLLER-YG-IDTYGLNAVVVGASNIVGRPMSLELLLAGCT-VTVCHRFT--------------------KNLRHH 199 (285)
T ss_pred HHHHHHHHHH-cC-CCCCCCEEEEECCCcccHHHHHHHHHHCCCe-EEEEECCC--------------------CCHHHH
Confidence 3344455543 32 468999999999988 999999999999985 99987641 134455
Q ss_pred cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 307 AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 307 l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
+..||+||+|+|.|.. ++.++++. | .++||+++-+
T Consensus 200 ~~~ADIvi~avG~p~~-v~~~~vk~---------g-avVIDvGin~ 234 (285)
T PRK10792 200 VRNADLLVVAVGKPGF-IPGEWIKP---------G-AIVIDVGINR 234 (285)
T ss_pred HhhCCEEEEcCCCccc-ccHHHcCC---------C-cEEEEccccc
Confidence 6789999999999986 46666632 2 7899998543
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0003 Score=72.36 Aligned_cols=180 Identities=17% Similarity=0.246 Sum_probs=103.1
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchH---------H-HHHHHhHhcCc---ccchhhHHHHHHHhhCcc-----
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQV---------K-QVVKVGQGVVG---FGRNISGLFKHAISVGKR----- 213 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQv---------k-~A~~~a~~~~~---~g~~L~~lf~~ai~v~k~----- 213 (513)
...|+|+++.+.+|++++....+|+..+.... . +-+..|...-. .|...++.|++++.++..
T Consensus 56 ~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~ 135 (347)
T cd05278 56 MILGHEFVGEVVEVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLA 135 (347)
T ss_pred ceeccceEEEEEEECCCccccCCCCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEE
Confidence 35799999999999999988889998886311 1 11111211000 011234556655555432
Q ss_pred -ccc----ccccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Q 010322 214 -VRT----ETNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIC 287 (513)
Q Consensus 214 -Vr~----et~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la 287 (513)
++. +.... ..+..+++.++..+ ...++.+|+|.|+|.+|.++++.++..|+..|++++++.++. .++
T Consensus 136 ~lP~~~~~~~aa~l~~~~~ta~~~~~~~------~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~-~~~ 208 (347)
T cd05278 136 KIPDGLPDEDALMLSDILPTGFHGAELA------GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERL-DLA 208 (347)
T ss_pred ECCCCCCHHHHhhhcchhhheeehhhhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHH-HHH
Confidence 111 11111 11233344443221 123689999999999999999999999975688888887776 566
Q ss_pred HHhCCcceeecccc--hH----Hhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 288 EELNGVEIIYKPLS--EM----LSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 288 ~~~g~~~~~~~~~~--~~----~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
++++.. .+.... +. .... .++|++++|++....+ ...++.+. ++|..+.++
T Consensus 209 ~~~g~~--~vi~~~~~~~~~~i~~~~~~~~~d~vld~~g~~~~~--~~~~~~l~-----~~G~~v~~g 267 (347)
T cd05278 209 KEAGAT--DIINPKNGDIVEQILELTGGRGVDCVIEAVGFEETF--EQAVKVVR-----PGGTIANVG 267 (347)
T ss_pred HHhCCc--EEEcCCcchHHHHHHHHcCCCCCcEEEEccCCHHHH--HHHHHHhh-----cCCEEEEEc
Confidence 677632 222211 12 2222 3689999998864322 33344332 356555554
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00032 Score=71.83 Aligned_cols=177 Identities=18% Similarity=0.279 Sum_probs=103.3
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCcccchhhHHHHHHHhhCc--------cc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVGFGRNISGLFKHAISVGK--------RV 214 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~V 214 (513)
..|+|+++.+..+++++....+|+..+.... ..-++.|......|...++.|..++.++. .+
T Consensus 57 ~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~ 136 (334)
T PRK13771 57 ILGHEVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVPPNV 136 (334)
T ss_pred eccccceEEEEEeCCCCccCCCCCEEEECCCCCCcCChhhcCCCcccCccccccccccCceeeeeeecchhceEECCCCC
Confidence 4699999999999999887888998875321 01112222222222223455555555543 22
Q ss_pred ccccccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC
Q 010322 215 RTETNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG 292 (513)
Q Consensus 215 r~et~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~ 292 (513)
..+.... .-+..++++++... ....+.+|+|.|+ |.+|.++++.++..|++ |+++.+++++.+.+ +.+ .
T Consensus 137 ~~~~~a~l~~~~~~a~~~~~~~------~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~-vi~~~~~~~~~~~~-~~~-~ 207 (334)
T PRK13771 137 SDEGAVIVPCVTGMVYRGLRRA------GVKKGETVLVTGAGGGVGIHAIQVAKALGAK-VIAVTSSESKAKIV-SKY-A 207 (334)
T ss_pred CHHHhhcccchHHHHHHHHHhc------CCCCCCEEEEECCCccHHHHHHHHHHHcCCE-EEEEeCCHHHHHHH-HHH-H
Confidence 2111111 12344455554432 1246889999999 99999999999999985 88888888877443 444 2
Q ss_pred cceeecc--c-chHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 293 VEIIYKP--L-SEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 293 ~~~~~~~--~-~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.. .+.. + +++.. +.++|++++|++... + .+.++.+. ++|..+.++.
T Consensus 208 ~~-~~~~~~~~~~v~~-~~~~d~~ld~~g~~~-~--~~~~~~l~-----~~G~~v~~g~ 256 (334)
T PRK13771 208 DY-VIVGSKFSEEVKK-IGGADIVIETVGTPT-L--EESLRSLN-----MGGKIIQIGN 256 (334)
T ss_pred HH-hcCchhHHHHHHh-cCCCcEEEEcCChHH-H--HHHHHHHh-----cCCEEEEEec
Confidence 11 1111 1 12222 246899999998742 2 34454443 3565555553
|
|
| >cd08290 ETR 2-enoyl thioester reductase (ETR) | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00076 Score=69.27 Aligned_cols=145 Identities=16% Similarity=0.173 Sum_probs=87.5
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhC--------cccccccccc-CC
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVG--------KRVRTETNIA-AG 223 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~--------k~Vr~et~i~-~~ 223 (513)
..|||+++.+.+++++++..-+|+..+.... . ++.|.+++.++ +.+..+.... ..
T Consensus 66 ~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~--------~--------~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~ 129 (341)
T cd08290 66 VGGNEGVGEVVKVGSGVKSLKPGDWVIPLRP--------G--------LGTWRTHAVVPADDLIKVPNDVDPEQAATLSV 129 (341)
T ss_pred CCCcceEEEEEEeCCCCCCCCCCCEEEecCC--------C--------CccchheEeccHHHeEeCCCCCCHHHHHHhhc
Confidence 5799999999999999998999998875321 0 23334433333 2222221111 12
Q ss_pred CchHHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCH----HHHHHHHHHhCCcceeec
Q 010322 224 AVSVSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSE----ERVAAICEELNGVEIIYK 298 (513)
Q Consensus 224 ~~Sva~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~----~ra~~la~~~g~~~~~~~ 298 (513)
+...++.++.... ....|.+|+|.|+ |.+|.++++.++..|++ ++++.++. ++. +++.++|... .+.
T Consensus 130 ~~~ta~~~l~~~~-----~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~-v~~~~~~~~~~~~~~-~~~~~~g~~~-~~~ 201 (341)
T cd08290 130 NPCTAYRLLEDFV-----KLQPGDWVIQNGANSAVGQAVIQLAKLLGIK-TINVVRDRPDLEELK-ERLKALGADH-VLT 201 (341)
T ss_pred cHHHHHHHHHhhc-----ccCCCCEEEEccchhHHHHHHHHHHHHcCCe-EEEEEcCCCcchhHH-HHHHhcCCCE-EEe
Confidence 3334455442211 1246899999997 99999999999999986 55555554 444 4456676421 121
Q ss_pred ccc----hHH----hhcC-CCcEEEEcCCCCc
Q 010322 299 PLS----EML----SCAA-DADVVFTSTASEA 321 (513)
Q Consensus 299 ~~~----~~~----~~l~-~aDVVI~AT~s~~ 321 (513)
..+ +.. .... ++|+||+|++...
T Consensus 202 ~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~ 233 (341)
T cd08290 202 EEELRSLLATELLKSAPGGRPKLALNCVGGKS 233 (341)
T ss_pred CcccccccHHHHHHHHcCCCceEEEECcCcHh
Confidence 111 111 1122 5899999999753
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f |
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00031 Score=72.46 Aligned_cols=93 Identities=15% Similarity=0.247 Sum_probs=69.7
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC-
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE- 320 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~- 320 (513)
.++.|++|+|+|.|.||..+++.|...| ..|.-.+|+..+.+. +.+++. . ..+..+.+..+|+||.|.+..
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~~~~~~-~~~~~~---~---~~d~~~~~~~sD~ivv~~pLt~ 229 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQLPPEE-AYEYYA---E---FVDIEELLANSDVIVVNCPLTK 229 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccCCchhh-HHHhcc---c---ccCHHHHHhhCCEEEEecCCCH
Confidence 5678999999999999999999999999 568889998776633 334432 1 346677788999999987665
Q ss_pred --ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 --APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 --~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++++.+..+. ...++|.++
T Consensus 230 ~T~~liNk~~~~~mk-------~g~vlVN~a 253 (336)
T KOG0069|consen 230 ETRHLINKKFIEKMK-------DGAVLVNTA 253 (336)
T ss_pred HHHHHhhHHHHHhcC-------CCeEEEecc
Confidence 4577887777653 235666654
|
|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0012 Score=66.68 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHc----CC------CeEEEEeCC----H------HHHHH
Q 010322 226 SVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAK----GC------TKMVVVNRS----E------ERVAA 285 (513)
Q Consensus 226 Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~----G~------~~V~v~nRs----~------~ra~~ 285 (513)
+|..+++--+-+..+ ..+.+.+|+|+|+|..|..+++.|... |. ++|+++|+. . +....
T Consensus 6 ~V~lAgllnAlk~~g-~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~ 84 (279)
T cd05312 6 AVALAGLLAALRITG-KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKP 84 (279)
T ss_pred HHHHHHHHHHHHHhC-CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHH
Confidence 444444433333333 567899999999999999999988876 88 689999984 1 11223
Q ss_pred HHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 286 ICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 286 la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
+++... . ....++.++++ ++|++|-+++.+ .+|+++.++.+.+ ...+.+++-||.|-
T Consensus 85 ~a~~~~----~-~~~~~L~e~i~~v~ptvlIG~S~~~-g~ft~evv~~Ma~----~~~~PIIFaLSNPt 143 (279)
T cd05312 85 FARKDE----E-KEGKSLLEVVKAVKPTVLIGLSGVG-GAFTEEVVRAMAK----SNERPIIFALSNPT 143 (279)
T ss_pred HHhhcC----c-ccCCCHHHHHHhcCCCEEEEeCCCC-CCCCHHHHHHHHh----cCCCCEEEECCCcC
Confidence 443311 0 12346778888 899999998765 4789999887643 12457888888884
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00047 Score=69.73 Aligned_cols=74 Identities=24% Similarity=0.318 Sum_probs=56.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAK--GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~--G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
....+|.|||+|.||+.+++.|... +++-+.+++|++++++++++.++.. ..+.++.+.+..+|+|+.||+...
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~----~~~~~~eell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRP----PPVVPLDQLATHADIVVEAAPASV 79 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCC----cccCCHHHHhcCCCEEEECCCcHH
Confidence 3457899999999999999999863 6654458999999998888887631 123445555678999999998754
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00036 Score=70.93 Aligned_cols=73 Identities=18% Similarity=0.285 Sum_probs=52.8
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC----------Ccc---------eeecccchHHhhc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN----------GVE---------IIYKPLSEMLSCA 307 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g----------~~~---------~~~~~~~~~~~~l 307 (513)
++|.|||+|.||..++..|...|. +|+++++++++.+...+.+. ... ..+....+..+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 579999999999999999999997 59999999876544332210 000 0111234566678
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
.++|+||.|++..
T Consensus 83 ~~aDlVieavpe~ 95 (287)
T PRK08293 83 KDADLVIEAVPED 95 (287)
T ss_pred cCCCEEEEeccCC
Confidence 8999999999875
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00043 Score=69.31 Aligned_cols=69 Identities=29% Similarity=0.418 Sum_probs=54.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGC--TKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~--~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+|.|||+|.||..++..|...|. ..|++++|++++++.+.+.++. .+ ..+..+.+..+|+||.|++..
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~---~~--~~~~~~~~~~advVil~v~~~ 73 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGV---RA--ATDNQEAAQEADVVVLAVKPQ 73 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCC---ee--cCChHHHHhcCCEEEEEcCHH
Confidence 579999999999999999998872 4699999999988777776542 22 234444567899999999764
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0012 Score=61.40 Aligned_cols=92 Identities=20% Similarity=0.325 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEccc-HHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHh
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGAG-KMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLS 305 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGaG-~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~ 305 (513)
.+...+++.+. .+ .++.|++|+|||.+ .+|+.++..|...|+. |+++...- .++.+
T Consensus 19 Tp~aii~lL~~-~~-~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~at-Vt~~h~~T--------------------~~l~~ 75 (160)
T PF02882_consen 19 TPLAIIELLEY-YG-IDLEGKKVVVVGRSNIVGKPLAMLLLNKGAT-VTICHSKT--------------------KNLQE 75 (160)
T ss_dssp HHHHHHHHHHH-TT--STTT-EEEEE-TTTTTHHHHHHHHHHTT-E-EEEE-TTS--------------------SSHHH
T ss_pred CHHHHHHHHHh-cC-CCCCCCEEEEECCcCCCChHHHHHHHhCCCe-EEeccCCC--------------------Ccccc
Confidence 34444566554 32 47899999999996 5999999999999985 88877642 22344
Q ss_pred hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 306 CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
.+..||+||+|+|.+.. ++.++++. + .++||+++..
T Consensus 76 ~~~~ADIVVsa~G~~~~-i~~~~ik~---------g-avVIDvG~~~ 111 (160)
T PF02882_consen 76 ITRRADIVVSAVGKPNL-IKADWIKP---------G-AVVIDVGINY 111 (160)
T ss_dssp HHTTSSEEEE-SSSTT--B-GGGS-T---------T-EEEEE--CEE
T ss_pred eeeeccEEeeeeccccc-cccccccC---------C-cEEEecCCcc
Confidence 56789999999999876 56677642 2 7999998543
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00011 Score=65.74 Aligned_cols=72 Identities=24% Similarity=0.360 Sum_probs=49.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
...+|.|||+|.+|..+++.|...|..-+-+++|+.+.++.++..++.. . ..++.+.+..+|++|-|++...
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~--~---~~~~~~~~~~aDlv~iavpDda 80 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAG--A---ILDLEEILRDADLVFIAVPDDA 80 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT----------TTGGGCC-SEEEE-S-CCH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccc--c---ccccccccccCCEEEEEechHH
Confidence 3568999999999999999999999875567799988887777666542 2 2344556789999999999873
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00029 Score=71.63 Aligned_cols=65 Identities=22% Similarity=0.247 Sum_probs=51.9
Q ss_pred EEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 251 VIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 251 VIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
|||+|.||..+++.|...|. +|+++||++++.+.+.+. |. . ..++..+.+.++|+||.|++.+..
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~-g~---~--~~~s~~~~~~~advVil~vp~~~~ 65 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH-PVRVFDLFPDAVEEAVAA-GA---Q--AAASPAEAAEGADRVITMLPAGQH 65 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHc-CC---e--ecCCHHHHHhcCCEEEEeCCChHH
Confidence 58999999999999999997 599999999988776542 32 1 234556677899999999998654
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00036 Score=72.16 Aligned_cols=86 Identities=14% Similarity=0.124 Sum_probs=63.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+.|++|+|||.|.||+.+++.|...|.+ |..++|... . . . . ...++.+.+..+|+|+.+++..
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~-V~~~~~~~~-~-~-----~---~---~~~~l~ell~~sDiv~l~lPlt~~ 210 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGMR-VLIGQLPGR-P-A-----R---P---DRLPLDELLPQVDALTLHCPLTEH 210 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCCE-EEEECCCCC-c-c-----c---c---cccCHHHHHHhCCEEEECCCCChH
Confidence 47899999999999999999999999995 888998631 1 0 0 0 1235667788999999997754
Q ss_pred -ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 -APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 -~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+|+.+.+..+.+ ..++|..+
T Consensus 211 T~~li~~~~~~~mk~-------ga~lIN~a 233 (317)
T PRK06487 211 TRHLIGARELALMKP-------GALLINTA 233 (317)
T ss_pred HhcCcCHHHHhcCCC-------CeEEEECC
Confidence 56788888877642 25666554
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00045 Score=71.83 Aligned_cols=90 Identities=19% Similarity=0.242 Sum_probs=63.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHH-HHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHL-VAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L-~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.+.|++|+|||+|.||+.+++.| ...|+ +|+.+|++.... .. .. +. ...++.+.+.++|+|+.|++...
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~-~~----~~--~~~~l~ell~~aDvIvl~lP~t~ 212 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGLAVAKIFAKGYGS-DVVAYDPFPNAK--AA-TY----VD--YKDTIEEAVEGADIVTLHMPATK 212 (332)
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECCCccHh--HH-hh----cc--ccCCHHHHHHhCCEEEEeCCCCc
Confidence 46899999999999999999999 55787 599999986543 11 11 11 12356677889999999988753
Q ss_pred ---cCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 322 ---PLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 322 ---~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
.+++.+.++.+. ...++|+++
T Consensus 213 ~t~~li~~~~l~~mk-------~gailIN~s 236 (332)
T PRK08605 213 YNHYLFNADLFKHFK-------KGAVFVNCA 236 (332)
T ss_pred chhhhcCHHHHhcCC-------CCcEEEECC
Confidence 345544454442 226888876
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0009 Score=68.20 Aligned_cols=93 Identities=23% Similarity=0.263 Sum_probs=62.7
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-chHHh----hc-CCCcEEEEc
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL-SEMLS----CA-ADADVVFTS 316 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~-~~~~~----~l-~~aDVVI~A 316 (513)
.+|.+|+|.|+ |++|.++++.++..|++ |+++.++.++. ++++++|... .+... ++..+ .. .++|+|+++
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~-vi~~~~s~~~~-~~l~~~Ga~~-vi~~~~~~~~~~v~~~~~~gvd~vld~ 218 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCK-VIGCAGSDDKV-AWLKELGFDA-VFNYKTVSLEEALKEAAPDGIDCYFDN 218 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCE-EEEEeCCHHHH-HHHHHcCCCE-EEeCCCccHHHHHHHHCCCCcEEEEEC
Confidence 46899999995 99999999999999995 88889998887 5556677421 22211 12211 11 468999999
Q ss_pred CCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 317 TASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 317 T~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
++.. .+ ...++.+. .+|..+.++
T Consensus 219 ~g~~-~~--~~~~~~l~-----~~G~iv~~g 241 (329)
T cd08294 219 VGGE-FS--STVLSHMN-----DFGRVAVCG 241 (329)
T ss_pred CCHH-HH--HHHHHhhc-----cCCEEEEEc
Confidence 9873 22 34444443 356666665
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00056 Score=69.30 Aligned_cols=91 Identities=20% Similarity=0.319 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhh
Q 010322 228 SSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSC 306 (513)
Q Consensus 228 a~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~ 306 (513)
+.+.+++.+. ++ .++.|++|+|||. |-||+.++..|...|+. |+++.... .++.+.
T Consensus 142 p~avi~lL~~-~~-i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gat-Vtv~~s~t--------------------~~l~~~ 198 (284)
T PRK14179 142 PAGIMEMFRE-YN-VELEGKHAVVIGRSNIVGKPMAQLLLDKNAT-VTLTHSRT--------------------RNLAEV 198 (284)
T ss_pred HHHHHHHHHH-hC-CCCCCCEEEEECCCCcCcHHHHHHHHHCCCE-EEEECCCC--------------------CCHHHH
Confidence 3344566543 32 4789999999999 99999999999999985 88883210 134455
Q ss_pred cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 307 AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 307 l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
++.||+||+|+|.+.. ++.++++. | .++||+++-+
T Consensus 199 ~~~ADIVI~avg~~~~-v~~~~ik~---------G-avVIDvgin~ 233 (284)
T PRK14179 199 ARKADILVVAIGRGHF-VTKEFVKE---------G-AVVIDVGMNR 233 (284)
T ss_pred HhhCCEEEEecCcccc-CCHHHccC---------C-cEEEEeccee
Confidence 6789999999999977 45555432 3 7899998644
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00083 Score=68.08 Aligned_cols=89 Identities=16% Similarity=0.299 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEEcccH-HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhh
Q 010322 228 SSAAVELALMKLPESSHATARMLVIGAGK-MGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSC 306 (513)
Q Consensus 228 a~~Av~la~~~~~~~~l~g~~VlVIGaG~-mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~ 306 (513)
+.+.+++.+. ++ -++.|++|+|||.|. +|+.++..|...|++ |++++... .++.+.
T Consensus 148 p~av~~ll~~-~~-i~l~Gk~vvViGrs~iVGkPla~lL~~~~at-Vtv~hs~T--------------------~~l~~~ 204 (287)
T PRK14176 148 PHGVIRALEE-YG-VDIEGKNAVIVGHSNVVGKPMAAMLLNRNAT-VSVCHVFT--------------------DDLKKY 204 (287)
T ss_pred HHHHHHHHHH-cC-CCCCCCEEEEECCCcccHHHHHHHHHHCCCE-EEEEeccC--------------------CCHHHH
Confidence 3344455543 32 468999999999988 999999999999985 88888421 133445
Q ss_pred cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccC
Q 010322 307 AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISV 350 (513)
Q Consensus 307 l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlav 350 (513)
+..||+||+|+|.|..+ +.++++. | .++||+++
T Consensus 205 ~~~ADIvv~AvG~p~~i-~~~~vk~---------g-avVIDvGi 237 (287)
T PRK14176 205 TLDADILVVATGVKHLI-KADMVKE---------G-AVIFDVGI 237 (287)
T ss_pred HhhCCEEEEccCCcccc-CHHHcCC---------C-cEEEEecc
Confidence 67899999999999764 7777642 2 78999986
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00043 Score=74.70 Aligned_cols=68 Identities=26% Similarity=0.452 Sum_probs=54.7
Q ss_pred CeEEEEc-ccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIG-AGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIG-aG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
++|+||| +|.||..++..|...|. +|++++|+++++.+++.++|. . ...+..+.+.++|+||.|++..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~~~~~~~~a~~~gv---~--~~~~~~e~~~~aDvVIlavp~~ 69 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF-EVIVTGRDPKKGKEVAKELGV---E--YANDNIDAAKDADIVIISVPIN 69 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHcCC---e--eccCHHHHhccCCEEEEecCHH
Confidence 3699998 79999999999999997 599999999887777777653 2 1234556678899999999874
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0012 Score=67.74 Aligned_cols=163 Identities=15% Similarity=0.156 Sum_probs=95.5
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchh--hHHHHHHHhh----Cccccccccc--cCC
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNI--SGLFKHAISV----GKRVRTETNI--AAG 223 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L--~~lf~~ai~v----~k~Vr~et~i--~~~ 223 (513)
...|.|+++.+.+++. .+.+|++...-. . ...+. +. ..+..+ +..+..+... ...
T Consensus 59 ~i~G~~~~g~v~~~~~---~~~~GdrV~~~~---~---------~~~~~~~~~--~~~~~l~~~~p~~~~~~~aaa~l~~ 121 (325)
T TIGR02825 59 TMMGQQVARVVESKNV---ALPKGTIVLASP---G---------WTSHSISDG--KDLEKLLTEWPDTLPLSLALGTVGM 121 (325)
T ss_pred cEecceEEEEEEeCCC---CCCCCCEEEEec---C---------ceeeEEech--hheEEccccccCCCCHHHHHHhccc
Confidence 3579999999998764 567888876410 0 11110 00 001111 3333322221 123
Q ss_pred CchHHHHHH-HHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-
Q 010322 224 AVSVSSAAV-ELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL- 300 (513)
Q Consensus 224 ~~Sva~~Av-~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~- 300 (513)
+..+++.++ +.+ ...+|.+|+|.|+ |++|.++++.++..|++ |+++.++.++. +++.++|.. ..+...
T Consensus 122 ~~~TA~~~l~~~~------~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~-Vi~~~~s~~~~-~~~~~lGa~-~vi~~~~ 192 (325)
T TIGR02825 122 PGLTAYFGLLEIC------GVKGGETVMVNAAAGAVGSVVGQIAKLKGCK-VVGAAGSDEKV-AYLKKLGFD-VAFNYKT 192 (325)
T ss_pred HHHHHHHHHHHHh------CCCCCCEEEEeCCccHHHHHHHHHHHHcCCE-EEEEeCCHHHH-HHHHHcCCC-EEEeccc
Confidence 344555553 222 2347899999995 99999999999999994 88889998887 555778752 122111
Q ss_pred -chHHhh---c--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 301 -SEMLSC---A--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 301 -~~~~~~---l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
++..+. . .++|+||+|++.+. + ...++.+. ++|+.+.++.
T Consensus 193 ~~~~~~~~~~~~~~gvdvv~d~~G~~~-~--~~~~~~l~-----~~G~iv~~G~ 238 (325)
T TIGR02825 193 VKSLEETLKKASPDGYDCYFDNVGGEF-S--NTVIGQMK-----KFGRIAICGA 238 (325)
T ss_pred cccHHHHHHHhCCCCeEEEEECCCHHH-H--HHHHHHhC-----cCcEEEEecc
Confidence 122211 1 36899999998743 2 34555443 4676776654
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00041 Score=65.47 Aligned_cols=75 Identities=21% Similarity=0.270 Sum_probs=52.7
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH------------------HHHHHHHHHhC----Ccceeec----ccc
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE------------------ERVAAICEELN----GVEIIYK----PLS 301 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~------------------~ra~~la~~~g----~~~~~~~----~~~ 301 (513)
+|+|+|+|++|..++++|...|+.+++++|.+. .|++.+++.+. ...+... ..+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~ 80 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN 80 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence 589999999999999999999999999998864 24444444332 1111111 112
Q ss_pred hHHhhcCCCcEEEEcCCCCcc
Q 010322 302 EMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 302 ~~~~~l~~aDVVI~AT~s~~~ 322 (513)
+..+.+.++|+||+|+.+...
T Consensus 81 ~~~~~l~~~DlVi~~~d~~~~ 101 (174)
T cd01487 81 NLEGLFGDCDIVVEAFDNAET 101 (174)
T ss_pred hHHHHhcCCCEEEECCCCHHH
Confidence 345668899999999877643
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00062 Score=72.17 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=68.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHH-HcCCCeEEEEeCCHHH-HHHHHHHhCC-------cceeecccchHHhhcCCCcEE
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLV-AKGCTKMVVVNRSEER-VAAICEELNG-------VEIIYKPLSEMLSCAADADVV 313 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~-~~G~~~V~v~nRs~~r-a~~la~~~g~-------~~~~~~~~~~~~~~l~~aDVV 313 (513)
.+.|++|+|||.|.||+.+++.|. ..|+ +|..++|+... ...+...++. ....+....++.+.+..+|+|
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm-~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV 240 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI 240 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEE
Confidence 478999999999999999999985 8898 49999987532 1111122221 000111124678888999999
Q ss_pred EEcCCC---CccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 314 FTSTAS---EAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 314 I~AT~s---~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
+.+++. ...+|+.+.++.+. ...++|.++
T Consensus 241 ~lh~Plt~~T~~lin~~~l~~MK-------~ga~lIN~a 272 (386)
T PLN02306 241 SLHPVLDKTTYHLINKERLALMK-------KEAVLVNAS 272 (386)
T ss_pred EEeCCCChhhhhhcCHHHHHhCC-------CCeEEEECC
Confidence 998654 45688888888764 237888876
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00035 Score=64.84 Aligned_cols=73 Identities=22% Similarity=0.257 Sum_probs=51.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
++.|++|+|||+|.+|..-++.|...|+. |+|++.. ..+++.+ ++. +.+..-.-..+.+.++|+||.||..+.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~-V~VIsp~--~~~~l~~-l~~--i~~~~~~~~~~dl~~a~lViaaT~d~e 82 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAF-VTVVSPE--ICKEMKE-LPY--ITWKQKTFSNDDIKDAHLIYAATNQHA 82 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCc--cCHHHHh-ccC--cEEEecccChhcCCCceEEEECCCCHH
Confidence 57899999999999999999999999985 8888654 3334433 332 122111111234789999999998875
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00041 Score=69.44 Aligned_cols=65 Identities=23% Similarity=0.340 Sum_probs=50.4
Q ss_pred eEEEEcccHHHHHHHHHHHHcCC---CeEEEE-eCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGC---TKMVVV-NRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~---~~V~v~-nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
+|.|||+|.||..+++.|...|. .+|+++ ||++++.+.+. ++|. .+ ..+..+.+.++|+||.|++
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-~~g~---~~--~~~~~e~~~~aDvVil~v~ 70 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-SLGV---KT--AASNTEVVKSSDVIILAVK 70 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-HcCC---EE--eCChHHHHhcCCEEEEEEC
Confidence 69999999999999999999885 258888 99999886654 3442 22 2344455678999999995
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00053 Score=66.84 Aligned_cols=78 Identities=23% Similarity=0.264 Sum_probs=55.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH------------------HHHHHHHHHhC----Ccceeec---
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE------------------ERVAAICEELN----GVEIIYK--- 298 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~------------------~ra~~la~~~g----~~~~~~~--- 298 (513)
+...+|+|+|+|++|..++.+|...|+.+++++|.+. .|++.+++.+. ...+...
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~ 105 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEK 105 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeee
Confidence 4678999999999999999999999999999999861 24544444432 1111111
Q ss_pred -ccchHHhhcCCCcEEEEcCCCCc
Q 010322 299 -PLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 299 -~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
..++..+.+.++|+||+|+-...
T Consensus 106 i~~~~~~~~~~~~DvVI~a~D~~~ 129 (212)
T PRK08644 106 IDEDNIEELFKDCDIVVEAFDNAE 129 (212)
T ss_pred cCHHHHHHHHcCCCEEEECCCCHH
Confidence 11234456789999999987654
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0006 Score=72.09 Aligned_cols=78 Identities=24% Similarity=0.338 Sum_probs=57.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhC----Ccceeecc-
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS-------------------EERVAAICEELN----GVEIIYKP- 299 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs-------------------~~ra~~la~~~g----~~~~~~~~- 299 (513)
+.+++|+|+|+|++|..++..|...|+.+|+++|++ ..|++.+++.+. ...+...+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 467899999999999999999999999999999997 346666666552 21111111
Q ss_pred ---cchHHhhcCCCcEEEEcCCCCc
Q 010322 300 ---LSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 300 ---~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.++..+.+.++|+||+||.+..
T Consensus 213 ~~~~~~~~~~~~~~D~Vv~~~d~~~ 237 (376)
T PRK08762 213 RVTSDNVEALLQDVDVVVDGADNFP 237 (376)
T ss_pred cCChHHHHHHHhCCCEEEECCCCHH
Confidence 1233455789999999998864
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00065 Score=69.70 Aligned_cols=74 Identities=19% Similarity=0.261 Sum_probs=54.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH----hCCc---c------eeecccchHHhhcCCCcEE
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEE----LNGV---E------IIYKPLSEMLSCAADADVV 313 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~----~g~~---~------~~~~~~~~~~~~l~~aDVV 313 (513)
++|.|||+|.||..++..|...|. +|++++++.++.+.+.+. ++.. . ..+....+..+.+.++|+|
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlV 83 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLV 83 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEE
Confidence 679999999999999999999997 599999999887665542 2210 0 0011224455567899999
Q ss_pred EEcCCCCc
Q 010322 314 FTSTASEA 321 (513)
Q Consensus 314 I~AT~s~~ 321 (513)
|.|++...
T Consensus 84 i~av~~~~ 91 (311)
T PRK06130 84 IEAVPEKL 91 (311)
T ss_pred EEeccCcH
Confidence 99998764
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00055 Score=70.30 Aligned_cols=73 Identities=23% Similarity=0.397 Sum_probs=54.2
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcc----e----eecccchHHhhcCCCcEEEEcCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVE----I----IYKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~----~----~~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
++|+|||+|.||..++..|...|. +|++++|++++.+.+........ . ......+..+.+.++|+||.|++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGH-DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVP 80 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCC
Confidence 479999999999999999999987 49999999988877765410000 0 01122345556779999999999
Q ss_pred CC
Q 010322 319 SE 320 (513)
Q Consensus 319 s~ 320 (513)
+.
T Consensus 81 ~~ 82 (325)
T PRK00094 81 SQ 82 (325)
T ss_pred HH
Confidence 84
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00057 Score=70.82 Aligned_cols=82 Identities=13% Similarity=0.220 Sum_probs=60.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHH-HcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC-
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLV-AKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~-~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~- 320 (513)
.+.|++|+|||.|.||+.+++.|. ..|.+ |..++|..... ....++ ... .++.+.++.+|+|+.+++..
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm~-V~~~~~~~~~~--~~~~~~---~~~---~~l~ell~~sDvv~lh~plt~ 212 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAHFGFNMP-ILYNARRHHKE--AEERFN---ARY---CDLDTLLQESDFVCIILPLTD 212 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHhcCCCE-EEEECCCCchh--hHHhcC---cEe---cCHHHHHHhCCEEEEeCCCCh
Confidence 578999999999999999999998 88985 88888864221 122333 122 35667788999999987764
Q ss_pred --ccCCChhhhhcCC
Q 010322 321 --APLFLKDHVQDLP 333 (513)
Q Consensus 321 --~~vi~~~~l~~~~ 333 (513)
..+|+.+.+..+.
T Consensus 213 ~T~~li~~~~l~~mk 227 (323)
T PRK15409 213 ETHHLFGAEQFAKMK 227 (323)
T ss_pred HHhhccCHHHHhcCC
Confidence 3577887777653
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0011 Score=67.22 Aligned_cols=91 Identities=16% Similarity=0.260 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEccc-HHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHh
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGAG-KMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLS 305 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGaG-~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~ 305 (513)
++.+.+++.+. ++ .++.|++|+|||.| -+|+.++..|...|+. |+++.... .++.+
T Consensus 140 Tp~avi~lL~~-~~-i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAt-Vtv~hs~t--------------------~~l~~ 196 (285)
T PRK14191 140 TPMGVMRLLKH-YH-IEIKGKDVVIIGASNIVGKPLAMLMLNAGAS-VSVCHILT--------------------KDLSF 196 (285)
T ss_pred cHHHHHHHHHH-hC-CCCCCCEEEEECCCchhHHHHHHHHHHCCCE-EEEEeCCc--------------------HHHHH
Confidence 33444566543 22 46899999999998 9999999999999986 88875321 12334
Q ss_pred hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCC
Q 010322 306 CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVP 351 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavP 351 (513)
.+..||+||+|+|.|.. ++.++++. | .++||+++-
T Consensus 197 ~~~~ADIvV~AvG~p~~-i~~~~vk~---------G-avVIDvGi~ 231 (285)
T PRK14191 197 YTQNADIVCVGVGKPDL-IKASMVKK---------G-AVVVDIGIN 231 (285)
T ss_pred HHHhCCEEEEecCCCCc-CCHHHcCC---------C-cEEEEeecc
Confidence 56789999999999876 57777642 2 789999863
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00064 Score=74.49 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=53.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh-------C---Cc----ceeecccchHHhhcCCCcE
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL-------N---GV----EIIYKPLSEMLSCAADADV 312 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~-------g---~~----~~~~~~~~~~~~~l~~aDV 312 (513)
++|.|||+|.||..++..|...|. +|+++|+++++.+.+.+.+ + .. ...+...+++.+++.++|+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~ 83 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW 83 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence 589999999999999999999998 5999999998876543211 0 00 0011223456667788999
Q ss_pred EEEcCCCCc
Q 010322 313 VFTSTASEA 321 (513)
Q Consensus 313 VI~AT~s~~ 321 (513)
||+|++...
T Consensus 84 Vieavpe~~ 92 (495)
T PRK07531 84 IQESVPERL 92 (495)
T ss_pred EEEcCcCCH
Confidence 999988764
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00077 Score=74.40 Aligned_cols=82 Identities=21% Similarity=0.231 Sum_probs=61.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+.|++|+|||.|.||+.+++.|...|+ +|..++|+... +.+..++. .. .+++.+.+..+|+|+.+++..
T Consensus 135 ~l~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~--~~~~~~g~---~~--~~~l~ell~~aDvV~l~lPlt~~ 206 (525)
T TIGR01327 135 ELYGKTLGVIGLGRIGSIVAKRAKAFGM-KVLAYDPYISP--ERAEQLGV---EL--VDDLDELLARADFITVHTPLTPE 206 (525)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCh--hHHHhcCC---EE--cCCHHHHHhhCCEEEEccCCChh
Confidence 4789999999999999999999999998 59999985322 11233332 21 245677788999999998865
Q ss_pred -ccCCChhhhhcC
Q 010322 321 -APLFLKDHVQDL 332 (513)
Q Consensus 321 -~~vi~~~~l~~~ 332 (513)
..+++.+.+..+
T Consensus 207 T~~li~~~~l~~m 219 (525)
T TIGR01327 207 TRGLIGAEELAKM 219 (525)
T ss_pred hccCcCHHHHhcC
Confidence 457777777654
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00069 Score=65.41 Aligned_cols=77 Identities=22% Similarity=0.275 Sum_probs=52.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC---HH---------------HHHHHHHHhC----Ccceee----
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS---EE---------------RVAAICEELN----GVEIIY---- 297 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs---~~---------------ra~~la~~~g----~~~~~~---- 297 (513)
+...+|+|+|+|.+|..++.+|...|+.+|+++|++ .. |++.+++.+. ...+..
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~ 98 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEK 98 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeee
Confidence 467899999999999999999999999999999987 21 2222233221 111111
Q ss_pred cccchHHhhcCCCcEEEEcCCCC
Q 010322 298 KPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 298 ~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
...+++.+.+.++|+||+|+-.+
T Consensus 99 i~~~~~~~~~~~~DlVi~a~Dn~ 121 (200)
T TIGR02354 99 ITEENIDKFFKDADIVCEAFDNA 121 (200)
T ss_pred CCHhHHHHHhcCCCEEEECCCCH
Confidence 11234455678999999996554
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0016 Score=72.52 Aligned_cols=133 Identities=18% Similarity=0.168 Sum_probs=77.4
Q ss_pred chHHHHHHHhHhcCcccchhhHHHHHHHhhCcc-ccccccccCCCchHHHHHHHHHHh--------hCC-CCCCCCCeEE
Q 010322 181 AQVKQVVKVGQGVVGFGRNISGLFKHAISVGKR-VRTETNIAAGAVSVSSAAVELALM--------KLP-ESSHATARML 250 (513)
Q Consensus 181 gQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~-Vr~et~i~~~~~Sva~~Av~la~~--------~~~-~~~l~g~~Vl 250 (513)
|+...|+...++.+-+...+.++... .+-.. .|. ..+.+|+.++++++.. ... .....|++|+
T Consensus 69 g~~~~a~~~~~~~np~~~~~grvc~~--~ce~~C~r~-----~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~g~~V~ 141 (564)
T PRK12771 69 GDYEYAWRRLTKDNPFPAVMGRVCYH--PCESGCNRG-----QVDDAVGINAVERFLGDYAIANGWKFPAPAPDTGKRVA 141 (564)
T ss_pred CCHHHHHHHHHHhCCcchHhhCcCCc--hhHHhccCC-----CCCCCcCHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEE
Confidence 56778888888765554444333321 01111 111 2245666667666420 000 0134689999
Q ss_pred EEcccHHHHHHHHHHHHcCCCeEEEEeCCH--------------------HHHHHHHHHhCCcceeeccc--ch--HHhh
Q 010322 251 VIGAGKMGKLVIKHLVAKGCTKMVVVNRSE--------------------ERVAAICEELNGVEIIYKPL--SE--MLSC 306 (513)
Q Consensus 251 VIGaG~mG~~ia~~L~~~G~~~V~v~nRs~--------------------~ra~~la~~~g~~~~~~~~~--~~--~~~~ 306 (513)
|||+|++|..++..|...|++ |+++++.+ ....+.+.++|. .+.+... .+ ....
T Consensus 142 VIGaGpaGL~aA~~l~~~G~~-V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv-~~~~~~~~~~~~~~~~~ 219 (564)
T PRK12771 142 VIGGGPAGLSAAYHLRRMGHA-VTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGV-EVRLGVRVGEDITLEQL 219 (564)
T ss_pred EECCCHHHHHHHHHHHHCCCe-EEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCC-EEEeCCEECCcCCHHHH
Confidence 999999999999999999985 99998531 112244555663 2222211 11 2222
Q ss_pred cCCCcEEEEcCCCCcc
Q 010322 307 AADADVVFTSTASEAP 322 (513)
Q Consensus 307 l~~aDVVI~AT~s~~~ 322 (513)
..++|+||.|||++.+
T Consensus 220 ~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 220 EGEFDAVFVAIGAQLG 235 (564)
T ss_pred HhhCCEEEEeeCCCCC
Confidence 3468999999998754
|
|
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00048 Score=70.03 Aligned_cols=159 Identities=23% Similarity=0.303 Sum_probs=93.8
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch-H---------HHHHHHhHhcCcccchhhHHHHHHHhhCc--------cc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ-V---------KQVVKVGQGVVGFGRNISGLFKHAISVGK--------RV 214 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ-v---------k~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~V 214 (513)
..|+|+++.+..++++++.+-+|+....-. . ....+.|......|...++.|+.++.++. .+
T Consensus 57 ~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~ 136 (332)
T cd08259 57 ILGHEIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLPDNV 136 (332)
T ss_pred eccccceEEEEEECCCCccCCCCCEEEECCCCCCcCChhhhCCCcccCCCccccccccCCeeeeEEEechhheEECCCCC
Confidence 579999999999999998888999877521 0 01122222222222222444544444433 22
Q ss_pred ccccccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC
Q 010322 215 RTETNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG 292 (513)
Q Consensus 215 r~et~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~ 292 (513)
..+.... ..+...++.++..+ ....+.+|+|.|+ |.+|.++++.++..|+. |+++.+++++.+.+ ..++.
T Consensus 137 ~~~~~~~~~~~~~ta~~~l~~~------~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~-v~~~~~~~~~~~~~-~~~~~ 208 (332)
T cd08259 137 SDESAALAACVVGTAVHALKRA------GVKKGDTVLVTGAGGGVGIHAIQLAKALGAR-VIAVTRSPEKLKIL-KELGA 208 (332)
T ss_pred CHHHHhhhccHHHHHHHHHHHh------CCCCCCEEEEECCCCHHHHHHHHHHHHcCCe-EEEEeCCHHHHHHH-HHcCC
Confidence 2111111 12233344444331 2246889999998 99999999999999985 88888888877444 55553
Q ss_pred cceeecccchHHh---hcCCCcEEEEcCCCCc
Q 010322 293 VEIIYKPLSEMLS---CAADADVVFTSTASEA 321 (513)
Q Consensus 293 ~~~~~~~~~~~~~---~l~~aDVVI~AT~s~~ 321 (513)
. .+...++..+ ...+.|+||+|++...
T Consensus 209 ~--~~~~~~~~~~~~~~~~~~d~v~~~~g~~~ 238 (332)
T cd08259 209 D--YVIDGSKFSEDVKKLGGADVVIELVGSPT 238 (332)
T ss_pred c--EEEecHHHHHHHHhccCCCEEEECCChHH
Confidence 1 1122211111 1237999999998754
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0015 Score=65.04 Aligned_cols=119 Identities=14% Similarity=0.204 Sum_probs=79.9
Q ss_pred CchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCC----------eEEEEeCC----HHH--H----
Q 010322 224 AVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCT----------KMVVVNRS----EER--V---- 283 (513)
Q Consensus 224 ~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~----------~V~v~nRs----~~r--a---- 283 (513)
+-+|..+++--+-+..+ ..+.+.+|+++|+|..|..++..|...+++ +|+++|+. .+| .
T Consensus 4 TaaV~lAgllnAlk~~g-~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~ 82 (254)
T cd00762 4 TASVAVAGLLAALKVTK-KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNE 82 (254)
T ss_pred hHHHHHHHHHHHHHHhC-CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHH
Confidence 33444444433333333 568899999999999999999999987775 89998874 111 1
Q ss_pred HHHHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 284 AAICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 284 ~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
..++ ++.. .-.+..++.++++ ++|++|-+++.+ .+|+++.++.+.+. ..+.+++-||.|-
T Consensus 83 ~~~~-~~~~---~~~~~~~L~eav~~~kptvlIG~S~~~-g~ft~evv~~Ma~~----~~~PIIFaLSNPt 144 (254)
T cd00762 83 YHLA-RFAN---PERESGDLEDAVEAAKPDFLIGVSRVG-GAFTPEVIRAXAEI----NERPVIFALSNPT 144 (254)
T ss_pred HHHH-HHcC---cccccCCHHHHHHhhCCCEEEEeCCCC-CCCCHHHHHHHhhc----CCCCEEEECCCcC
Confidence 1222 1211 1123357788888 999999988865 47889999876532 3457888898884
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00066 Score=68.72 Aligned_cols=68 Identities=21% Similarity=0.206 Sum_probs=50.7
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
+|.|||+|.||..++..|...|. +|++++|++++.+.+. ..+.. .. ...+. +.+.++|+||.|++...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~-~~g~~--~~-~~~~~-~~~~~aDlVilavp~~~ 69 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAI-ERGLV--DE-ASTDL-SLLKDCDLVILALPIGL 69 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH-HCCCc--cc-ccCCH-hHhcCCCEEEEcCCHHH
Confidence 69999999999999999999997 5999999988775543 33321 11 11222 34678999999998653
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00069 Score=79.50 Aligned_cols=76 Identities=14% Similarity=0.267 Sum_probs=58.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcC-CC------------eEEEEeCCHHHHHHHHHHhCCc-cee--ecccchHHhhcC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKG-CT------------KMVVVNRSEERVAAICEELNGV-EII--YKPLSEMLSCAA 308 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G-~~------------~V~v~nRs~~ra~~la~~~g~~-~~~--~~~~~~~~~~l~ 308 (513)
..++|+|||||.||+.++.+|...+ +. .|+|++++.++++++++.+.+. .+. +.+.+++.+.+.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 4679999999999999999998753 22 3999999999999998877321 112 223455666678
Q ss_pred CCcEEEEcCCCC
Q 010322 309 DADVVFTSTASE 320 (513)
Q Consensus 309 ~aDVVI~AT~s~ 320 (513)
++|+||+|+|..
T Consensus 648 ~~DaVIsalP~~ 659 (1042)
T PLN02819 648 QVDVVISLLPAS 659 (1042)
T ss_pred CCCEEEECCCch
Confidence 899999999974
|
|
| >TIGR01751 crot-CoA-red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0011 Score=70.21 Aligned_cols=135 Identities=18% Similarity=0.213 Sum_probs=80.2
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHH--HHH--------HhHhcCcccc-hhhHHHHHHHhhCc--------c
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQ--VVK--------VGQGVVGFGR-NISGLFKHAISVGK--------R 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~--A~~--------~a~~~~~~g~-~L~~lf~~ai~v~k--------~ 213 (513)
..|||+++.+.+++++++.+-+|+..+....-. -.. .|......|. ..++.|++++.++. .
T Consensus 80 v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~ 159 (398)
T TIGR01751 80 IIGSDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKH 159 (398)
T ss_pred ecccceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeEECCCC
Confidence 579999999999999999999999887642100 011 1111100110 01344544444433 2
Q ss_pred cccccccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC
Q 010322 214 VRTETNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN 291 (513)
Q Consensus 214 Vr~et~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g 291 (513)
+..+.... ..+...++.++.... .. ....|.+|+|.|+ |.+|.++++.++..|++ ++++.++.++. ++++++|
T Consensus 160 l~~~~aa~~~~~~~ta~~al~~~~-~~--~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~-vi~~~~~~~~~-~~~~~~g 234 (398)
T TIGR01751 160 LTWEEAACPGLTGATAYRQLVGWN-PA--TVKPGDNVLIWGAAGGLGSYATQLARAGGGN-PVAVVSSPEKA-EYCRELG 234 (398)
T ss_pred CCHHHHhhccchHHHHHHHHhhhh-cc--CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCe-EEEEcCCHHHH-HHHHHcC
Confidence 22222111 123344454432110 01 2246899999998 99999999999999996 66677887776 5556676
Q ss_pred C
Q 010322 292 G 292 (513)
Q Consensus 292 ~ 292 (513)
.
T Consensus 235 ~ 235 (398)
T TIGR01751 235 A 235 (398)
T ss_pred C
Confidence 4
|
The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. |
| >PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00038 Score=69.31 Aligned_cols=102 Identities=20% Similarity=0.321 Sum_probs=69.4
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHc----CC------CeEEEEeCC----HHH------HHHHHHHhCCcceeecccc
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAK----GC------TKMVVVNRS----EER------VAAICEELNGVEIIYKPLS 301 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~----G~------~~V~v~nRs----~~r------a~~la~~~g~~~~~~~~~~ 301 (513)
.++.+.+++++|+|..|..++..|... |. ++|+++|+. .+| ...+++... ....+.
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~----~~~~~~ 96 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTN----PEKDWG 96 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSS----TTT--S
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCc----cccccc
Confidence 568899999999999999999999887 99 789999984 111 123333211 111124
Q ss_pred hHHhhcCCC--cEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 302 EMLSCAADA--DVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 302 ~~~~~l~~a--DVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
++.++++++ |++|-+++.+ .+|+++.++.+.+. ..+.+++-||.|-
T Consensus 97 ~L~eav~~~kPtvLIG~S~~~-g~ft~evv~~Ma~~----~erPIIF~LSNPt 144 (255)
T PF03949_consen 97 SLLEAVKGAKPTVLIGLSGQG-GAFTEEVVRAMAKH----NERPIIFPLSNPT 144 (255)
T ss_dssp SHHHHHHCH--SEEEECSSST-TSS-HHHHHHCHHH----SSSEEEEE-SSSC
T ss_pred CHHHHHHhcCCCEEEEecCCC-CcCCHHHHHHHhcc----CCCCEEEECCCCC
Confidence 778888887 9999998855 46899999886532 3458899999884
|
g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B .... |
| >TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0023 Score=65.53 Aligned_cols=156 Identities=14% Similarity=0.064 Sum_probs=87.2
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccccCCCch--HHH
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVS--VSS 229 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~~~~~S--va~ 229 (513)
...|+|+++.+.+|++++..+-+|+..+.... ....|.+..+..---...+.++..+..+.... -+.+ .++
T Consensus 60 ~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~------~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~-~~~~~~ta~ 132 (336)
T TIGR02817 60 KILGWDAAGVVVAVGDEVTLFKPGDEVWYAGD------IDRPGSNAEFHLVDERIVGHKPKSLSFAEAAA-LPLTSITAW 132 (336)
T ss_pred cccceeeEEEEEEeCCCCCCCCCCCEEEEcCC------CCCCCcccceEEEcHHHcccCCCCCCHHHHhh-hhHHHHHHH
Confidence 35699999999999999998889998874210 00011111111000011223333332222211 1222 223
Q ss_pred HHHHHHHhhCCCCCCC-----CCeEEEEcc-cHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccch
Q 010322 230 AAVELALMKLPESSHA-----TARMLVIGA-GKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSE 302 (513)
Q Consensus 230 ~Av~la~~~~~~~~l~-----g~~VlVIGa-G~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~ 302 (513)
.++.. .. .-.. |.+|+|.|+ |.+|.++++.++.. |++ |+.+.++.++.+. +.++|.. ..+....+
T Consensus 133 ~~l~~---~~--~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~~-vi~~~~~~~~~~~-l~~~g~~-~~~~~~~~ 204 (336)
T TIGR02817 133 ELLFD---RL--GINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLT-VIATASRPESQEW-VLELGAH-HVIDHSKP 204 (336)
T ss_pred HHHHH---hc--CCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCCE-EEEEcCcHHHHHH-HHHcCCC-EEEECCCC
Confidence 33211 11 1112 889999996 99999999999987 885 8888888887744 4667742 11211112
Q ss_pred HHhh---c--CCCcEEEEcCCCCcc
Q 010322 303 MLSC---A--ADADVVFTSTASEAP 322 (513)
Q Consensus 303 ~~~~---l--~~aDVVI~AT~s~~~ 322 (513)
.... + .+.|+|+++++.+..
T Consensus 205 ~~~~i~~~~~~~vd~vl~~~~~~~~ 229 (336)
T TIGR02817 205 LKAQLEKLGLEAVSYVFSLTHTDQH 229 (336)
T ss_pred HHHHHHHhcCCCCCEEEEcCCcHHH
Confidence 2111 2 368999999866544
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model. |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00098 Score=68.48 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=53.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----------HhCCcc--------eeecccchHHhhcC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE----------ELNGVE--------IIYKPLSEMLSCAA 308 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~----------~~g~~~--------~~~~~~~~~~~~l~ 308 (513)
++|.|||+|.||..++..|...|. +|+++||+++..+.... ..|... ..+....++.+.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 479999999999999999999998 59999999876644221 111100 00122346666778
Q ss_pred CCcEEEEcCCCCc
Q 010322 309 DADVVFTSTASEA 321 (513)
Q Consensus 309 ~aDVVI~AT~s~~ 321 (513)
++|+||.|++...
T Consensus 82 ~ad~Vi~avpe~~ 94 (308)
T PRK06129 82 DADYVQESAPENL 94 (308)
T ss_pred CCCEEEECCcCCH
Confidence 9999999998753
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00081 Score=67.74 Aligned_cols=69 Identities=13% Similarity=0.278 Sum_probs=53.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAK--GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~--G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+|.|||+|.||..++..+... ++.-+.+++|++++++.+++.++. . .+++..+.+.++|+|+.||+..
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~---~--~~~~~~ell~~~DvVvi~a~~~ 72 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGA---K--ACLSIDELVEDVDLVVECASVN 72 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCC---e--eECCHHHHhcCCCEEEEcCChH
Confidence 3799999999999999998875 455577899999999888887653 1 2345555567899999998653
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00065 Score=69.17 Aligned_cols=74 Identities=20% Similarity=0.305 Sum_probs=51.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh----------CCcc--------eeecccchHHhhcC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL----------NGVE--------IIYKPLSEMLSCAA 308 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~----------g~~~--------~~~~~~~~~~~~l~ 308 (513)
++|.|||+|.||..+|..+...|. +|+++|++++..+...+.+ |... ..+....++ +.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~ 83 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFA 83 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhC
Confidence 489999999999999999999998 5999999998765421111 1100 011122344 4478
Q ss_pred CCcEEEEcCCCCcc
Q 010322 309 DADVVFTSTASEAP 322 (513)
Q Consensus 309 ~aDVVI~AT~s~~~ 322 (513)
++|+||+|.+-...
T Consensus 84 ~~d~ViEav~E~~~ 97 (286)
T PRK07819 84 DRQLVIEAVVEDEA 97 (286)
T ss_pred CCCEEEEecccCHH
Confidence 99999999776543
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.002 Score=66.40 Aligned_cols=95 Identities=19% Similarity=0.271 Sum_probs=63.8
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc--chHHhhc-----CCCcEEEE
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL--SEMLSCA-----ADADVVFT 315 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~--~~~~~~l-----~~aDVVI~ 315 (513)
..|++|+|.|+ |.+|.++++.++..|++ |+++.++.++.+.+.+.+|... .+... ++..+.+ .++|+||+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~-Vi~~~~~~~~~~~~~~~lGa~~-vi~~~~~~~~~~~i~~~~~~gvd~v~d 227 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCY-VVGSAGSDEKVDLLKNKLGFDD-AFNYKEEPDLDAALKRYFPNGIDIYFD 227 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCce-eEEcCCcccHHHHHHHhCCCCcEEEEE
Confidence 47899999998 99999999999999995 8888898888755444377421 22211 1222211 47899999
Q ss_pred cCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 316 STASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 316 AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+++.. .+ .+.++.+. ++|..+.++.
T Consensus 228 ~~g~~-~~--~~~~~~l~-----~~G~iv~~G~ 252 (338)
T cd08295 228 NVGGK-ML--DAVLLNMN-----LHGRIAACGM 252 (338)
T ss_pred CCCHH-HH--HHHHHHhc-----cCcEEEEecc
Confidence 99863 32 34455443 3566666653
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00063 Score=72.77 Aligned_cols=80 Identities=11% Similarity=0.163 Sum_probs=60.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+.|++|+|||.|.||+.+|+.+...|. +|..++|+... ..+. +....++.+.+..+|+|+.+.+..
T Consensus 148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~~~~~------~~~~----~~~~~~l~ell~~sDiVslh~Plt~~ 216 (409)
T PRK11790 148 EVRGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDIEDKL------PLGN----ARQVGSLEELLAQSDVVSLHVPETPS 216 (409)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCccc------ccCC----ceecCCHHHHHhhCCEEEEcCCCChH
Confidence 5789999999999999999999999999 49999986421 1111 112346777888999999997764
Q ss_pred -ccCCChhhhhcCC
Q 010322 321 -APLFLKDHVQDLP 333 (513)
Q Consensus 321 -~~vi~~~~l~~~~ 333 (513)
..+|+.+.+..+.
T Consensus 217 T~~li~~~~l~~mk 230 (409)
T PRK11790 217 TKNMIGAEELALMK 230 (409)
T ss_pred HhhccCHHHHhcCC
Confidence 3577777776653
|
|
| >cd05282 ETR_like 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0016 Score=66.08 Aligned_cols=152 Identities=13% Similarity=0.137 Sum_probs=89.4
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCcccccccccc-CCCchHHHHH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIA-AGAVSVSSAA 231 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~-~~~~Sva~~A 231 (513)
..|+++++.+.+++++++..-+|++.+.... .|..+.+...-....+.++..+....... .-+...++.+
T Consensus 59 ~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~---------~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~ 129 (323)
T cd05282 59 VPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG---------EGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLM 129 (323)
T ss_pred cCCcceEEEEEEeCCCCCCCCCCCEEEEeCC---------CCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHH
Confidence 5799999999999999998889998775321 12222222111122233333222211111 0111223333
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc-h----HHh
Q 010322 232 VELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS-E----MLS 305 (513)
Q Consensus 232 v~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~-~----~~~ 305 (513)
+... . ....|.+|+|+|+ |.+|.++++.++..|++ ++++.++.++. ++++++|.. ..+...+ + +..
T Consensus 130 ~~~~----~-~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~-v~~~~~~~~~~-~~~~~~g~~-~~~~~~~~~~~~~~~~ 201 (323)
T cd05282 130 LTEY----L-KLPPGDWVIQNAANSAVGRMLIQLAKLLGFK-TINVVRRDEQV-EELKALGAD-EVIDSSPEDLAQRVKE 201 (323)
T ss_pred HHHh----c-cCCCCCEEEEcccccHHHHHHHHHHHHCCCe-EEEEecChHHH-HHHHhcCCC-EEecccchhHHHHHHH
Confidence 2211 1 1246889999998 89999999999999986 77888888776 445677642 1121111 1 222
Q ss_pred hc--CCCcEEEEcCCCCc
Q 010322 306 CA--ADADVVFTSTASEA 321 (513)
Q Consensus 306 ~l--~~aDVVI~AT~s~~ 321 (513)
.. .++|+|++|++...
T Consensus 202 ~~~~~~~d~vl~~~g~~~ 219 (323)
T cd05282 202 ATGGAGARLALDAVGGES 219 (323)
T ss_pred HhcCCCceEEEECCCCHH
Confidence 22 46999999999754
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.001 Score=73.48 Aligned_cols=81 Identities=19% Similarity=0.161 Sum_probs=60.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+.|++|+|||.|.||+.+++.|+..|+ +|.+++|+.... .+..++. ... ++.+.+..+|+|+.+++.+
T Consensus 137 ~l~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~--~~~~~g~---~~~---~l~ell~~aDiV~l~lP~t~~ 207 (526)
T PRK13581 137 ELYGKTLGIIGLGRIGSEVAKRAKAFGM-KVIAYDPYISPE--RAAQLGV---ELV---SLDELLARADFITLHTPLTPE 207 (526)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCChh--HHHhcCC---EEE---cHHHHHhhCCEEEEccCCChH
Confidence 4689999999999999999999999999 599999864321 1223332 222 5667788999999998875
Q ss_pred -ccCCChhhhhcC
Q 010322 321 -APLFLKDHVQDL 332 (513)
Q Consensus 321 -~~vi~~~~l~~~ 332 (513)
..+++.+.+..+
T Consensus 208 t~~li~~~~l~~m 220 (526)
T PRK13581 208 TRGLIGAEELAKM 220 (526)
T ss_pred hhcCcCHHHHhcC
Confidence 346776666654
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00088 Score=64.96 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=54.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHH-HHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEE-RVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~-ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
++.|++|+|||+|.+|..-++.|...|+ +|+|++.+.. ....+++. +. +.+..-+-....+.++|+||.||+.+.
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~~~l~~l~~~-~~--i~~~~~~~~~~dl~~~~lVi~at~d~~ 81 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELESELTLLAEQ-GG--ITWLARCFDADILEGAFLVIAATDDEE 81 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCCHHHHHHHHc-CC--EEEEeCCCCHHHhCCcEEEEECCCCHH
Confidence 5789999999999999999999999998 4999988653 33455443 22 333221111334689999999999874
Q ss_pred c
Q 010322 322 P 322 (513)
Q Consensus 322 ~ 322 (513)
.
T Consensus 82 l 82 (205)
T TIGR01470 82 L 82 (205)
T ss_pred H
Confidence 3
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00074 Score=68.72 Aligned_cols=75 Identities=20% Similarity=0.326 Sum_probs=52.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh----------CCcc--------eeecccchHHhhc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL----------NGVE--------IIYKPLSEMLSCA 307 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~----------g~~~--------~~~~~~~~~~~~l 307 (513)
-++|.|||+|.||..++..|...|. +|+++++++++++...+.+ +... ..+...++. +.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 81 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDL-EDL 81 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCH-HHh
Confidence 3689999999999999999999998 5999999988775533211 1100 001122344 346
Q ss_pred CCCcEEEEcCCCCcc
Q 010322 308 ADADVVFTSTASEAP 322 (513)
Q Consensus 308 ~~aDVVI~AT~s~~~ 322 (513)
.++|+||.|++....
T Consensus 82 ~~aD~Vieavpe~~~ 96 (292)
T PRK07530 82 ADCDLVIEAATEDET 96 (292)
T ss_pred cCCCEEEEcCcCCHH
Confidence 899999999987643
|
|
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0028 Score=64.27 Aligned_cols=171 Identities=17% Similarity=0.189 Sum_probs=96.6
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccccC-CCchHHHHH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAA-GAVSVSSAA 231 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~~-~~~Sva~~A 231 (513)
..|+|+++.+..+++++...-+|+..+.... ...|....+...--...+.+++.+..+..... -+..+++..
T Consensus 62 ~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~-------~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~ 134 (324)
T cd08244 62 VPGGEVAGVVDAVGPGVDPAWLGRRVVAHTG-------RAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALGL 134 (324)
T ss_pred CCccceEEEEEEeCCCCCCCCCCCEEEEccC-------CCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHHHH
Confidence 5799999999999998887788987665311 01122222111111122333333322221111 111222222
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc-h----HHh
Q 010322 232 VELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS-E----MLS 305 (513)
Q Consensus 232 v~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~-~----~~~ 305 (513)
+..+ ....+.+|+|.|+ |.+|.++++.++..|++ |+++.++.++.+ ++..++.. ..+...+ + +..
T Consensus 135 ~~~~------~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~-v~~~~~~~~~~~-~~~~~g~~-~~~~~~~~~~~~~~~~ 205 (324)
T cd08244 135 LDLA------TLTPGDVVLVTAAAGGLGSLLVQLAKAAGAT-VVGAAGGPAKTA-LVRALGAD-VAVDYTRPDWPDQVRE 205 (324)
T ss_pred HHhc------CCCCCCEEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHH-HHHHcCCC-EEEecCCccHHHHHHH
Confidence 2221 1236889999995 99999999999999985 888899888874 44667642 1121111 1 222
Q ss_pred hc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 306 CA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 306 ~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
.. .++|+|++|++.+.. ...++.+. .+|..+.+.
T Consensus 206 ~~~~~~~d~vl~~~g~~~~---~~~~~~l~-----~~g~~v~~g 241 (324)
T cd08244 206 ALGGGGVTVVLDGVGGAIG---RAALALLA-----PGGRFLTYG 241 (324)
T ss_pred HcCCCCceEEEECCChHhH---HHHHHHhc-----cCcEEEEEe
Confidence 22 369999999987532 34454443 245555554
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0023 Score=65.87 Aligned_cols=177 Identities=17% Similarity=0.198 Sum_probs=98.4
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHH--HHHhHhcCcccchhhHHHHHHHhhCc--------cccccccc-c
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQV--VKVGQGVVGFGRNISGLFKHAISVGK--------RVRTETNI-A 221 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A--~~~a~~~~~~g~~L~~lf~~ai~v~k--------~Vr~et~i-~ 221 (513)
..|||+++.+.+|++++..+.+|++.+....... ...+.....+|...++.|+.++.++. .+...... .
T Consensus 80 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~a~l 159 (350)
T cd08274 80 IQGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAYPVNSPLSDVELATF 159 (350)
T ss_pred ccCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHceeCCCCCCHHHHHhc
Confidence 4799999999999999998899998876321000 00011111122222344444333332 22211111 1
Q ss_pred CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc
Q 010322 222 AGAVSVSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL 300 (513)
Q Consensus 222 ~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~ 300 (513)
..+...++.++..+ ...+|.+|+|.|+ |.+|.+++..++..|++ ++++.++. +. .+++++|. .......
T Consensus 160 ~~~~~ta~~~~~~~------~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~-vi~~~~~~-~~-~~~~~~g~-~~~~~~~ 229 (350)
T cd08274 160 PCSYSTAENMLERA------GVGAGETVLVTGASGGVGSALVQLAKRRGAI-VIAVAGAA-KE-EAVRALGA-DTVILRD 229 (350)
T ss_pred ccHHHHHHHHHhhc------CCCCCCEEEEEcCCcHHHHHHHHHHHhcCCE-EEEEeCch-hh-HHHHhcCC-eEEEeCC
Confidence 12233344444322 2346899999999 99999999999999997 66666654 55 45567764 2111111
Q ss_pred c-hH--Hhh--cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 301 S-EM--LSC--AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 301 ~-~~--~~~--l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
. .. ... -.++|+||+|++.. .+ ...++.+. .+|..+.++
T Consensus 230 ~~~~~~~~~~~~~~~d~vi~~~g~~-~~--~~~~~~l~-----~~G~~v~~g 273 (350)
T cd08274 230 APLLADAKALGGEPVDVVADVVGGP-LF--PDLLRLLR-----PGGRYVTAG 273 (350)
T ss_pred CccHHHHHhhCCCCCcEEEecCCHH-HH--HHHHHHhc-----cCCEEEEec
Confidence 1 11 111 14699999999864 22 33444433 356555554
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0016 Score=66.09 Aligned_cols=92 Identities=20% Similarity=0.288 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchH
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVA--KGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEM 303 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~--~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~ 303 (513)
++.+.+++.+. ++ .++.|++|+|||. +-+|+-++..|.. .|++ |+++.... .++
T Consensus 141 Tp~av~~ll~~-~~-i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~at-Vtvchs~T--------------------~~l 197 (284)
T PRK14193 141 TPRGIVHLLRR-YD-VELAGAHVVVIGRGVTVGRPIGLLLTRRSENAT-VTLCHTGT--------------------RDL 197 (284)
T ss_pred CHHHHHHHHHH-hC-CCCCCCEEEEECCCCcchHHHHHHHhhccCCCE-EEEeCCCC--------------------CCH
Confidence 34444566543 32 4689999999999 7789999999987 6774 88886531 134
Q ss_pred HhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 304 LSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 304 ~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
.+.++.||+||+|+|.|.. ++.++++. | .++||.++.+
T Consensus 198 ~~~~k~ADIvV~AvGkp~~-i~~~~ik~---------G-avVIDvGin~ 235 (284)
T PRK14193 198 AAHTRRADIIVAAAGVAHL-VTADMVKP---------G-AAVLDVGVSR 235 (284)
T ss_pred HHHHHhCCEEEEecCCcCc-cCHHHcCC---------C-CEEEEccccc
Confidence 4556789999999999965 67788743 3 7899998765
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00023 Score=62.76 Aligned_cols=112 Identities=19% Similarity=0.295 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-c----hHHhhcC--CCcEEEEcCCCCccCCChhh
Q 010322 256 KMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL-S----EMLSCAA--DADVVFTSTASEAPLFLKDH 328 (513)
Q Consensus 256 ~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~-~----~~~~~l~--~aDVVI~AT~s~~~vi~~~~ 328 (513)
++|..+++.++..| .+|++++++++|. ++++++|... .+... . .+.+... ++|+||+|+|++..+ ...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~-~~~~~~Ga~~-~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~--~~~ 75 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKL-ELAKELGADH-VIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTL--QEA 75 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHH-HHHHHTTESE-EEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHH--HHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHH-HHHHhhcccc-cccccccccccccccccccccceEEEEecCcHHHH--HHH
Confidence 58999999999999 5799999998887 7788888432 22221 1 2223333 699999999987654 445
Q ss_pred hhcCCchhhhcCCcEEEEeccCCCCCCccc-------ccccCeEEEccCCHHHHHH
Q 010322 329 VQDLPPVEAAVGGLRLFIDISVPRNVGSCV-------ADVETARVYNVDDLKEVVA 377 (513)
Q Consensus 329 l~~~~~~~~~~~g~~viiDlavPrdidp~v-------~~l~gv~ly~iDdl~~v~~ 377 (513)
++.+. ++|+.+++.+.-..++.... ..+-|+..++.++++++++
T Consensus 76 ~~~l~-----~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~ 126 (130)
T PF00107_consen 76 IKLLR-----PGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGSPEDFQEALQ 126 (130)
T ss_dssp HHHEE-----EEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGGHHHHHHHHH
T ss_pred HHHhc-----cCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCCHHHHHHHHH
Confidence 54442 46777777764201111111 1344555666666666544
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0013 Score=59.87 Aligned_cols=75 Identities=20% Similarity=0.324 Sum_probs=55.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCc----ceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGV----EIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~----~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+|.|||+ |.+|..++..|...|. .+|.++|++.++++..+..+... ........+..+.+.++|+||.+.+.+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 37999999 9999999999999876 57999999988877766655311 011111224566688999999998876
Q ss_pred c
Q 010322 321 A 321 (513)
Q Consensus 321 ~ 321 (513)
.
T Consensus 81 ~ 81 (141)
T PF00056_consen 81 R 81 (141)
T ss_dssp S
T ss_pred c
Confidence 3
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0015 Score=66.03 Aligned_cols=91 Identities=19% Similarity=0.317 Sum_probs=67.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEEccc-HHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhh
Q 010322 228 SSAAVELALMKLPESSHATARMLVIGAG-KMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSC 306 (513)
Q Consensus 228 a~~Av~la~~~~~~~~l~g~~VlVIGaG-~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~ 306 (513)
+.+.+++.+. .+ .++.|++|+|+|.| ..|+.++..|...|+. |+++.++.. ++.+.
T Consensus 136 p~av~~ll~~-~~-i~l~Gk~V~ViGrs~~vGrpla~lL~~~~at-Vtv~hs~t~--------------------~L~~~ 192 (279)
T PRK14178 136 PNGIMTLLHE-YK-ISIAGKRAVVVGRSIDVGRPMAALLLNADAT-VTICHSKTE--------------------NLKAE 192 (279)
T ss_pred HHHHHHHHHH-cC-CCCCCCEEEEECCCccccHHHHHHHHhCCCe-eEEEecChh--------------------HHHHH
Confidence 3344566543 32 47899999999997 9999999999999985 888876532 23444
Q ss_pred cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 307 AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 307 l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
+..||+||+|+|.+ .+++.++++. | .++||+++-+
T Consensus 193 ~~~ADIvI~Avgk~-~lv~~~~vk~---------G-avVIDVgi~~ 227 (279)
T PRK14178 193 LRQADILVSAAGKA-GFITPDMVKP---------G-ATVIDVGINQ 227 (279)
T ss_pred HhhCCEEEECCCcc-cccCHHHcCC---------C-cEEEEeeccc
Confidence 57899999999988 5678888632 2 6899998654
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0011 Score=67.77 Aligned_cols=67 Identities=16% Similarity=0.304 Sum_probs=51.3
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
+|.|||.|.||..+++.|...|. +|+++||++. ++.+. ..|. . ...+..+....+|+||.|++.+..
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~~-~~~~~-~~g~---~--~~~s~~~~~~~advVi~~v~~~~~ 68 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGPV-ADELL-SLGA---V--SVETARQVTEASDIIFIMVPDTPQ 68 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCHh-HHHHH-HcCC---e--ecCCHHHHHhcCCEEEEeCCChHH
Confidence 69999999999999999999997 5999999974 44554 3342 1 223445566799999999998743
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0015 Score=66.15 Aligned_cols=92 Identities=20% Similarity=0.308 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHh
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLS 305 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~ 305 (513)
++.+.+++.+. ++ .++.|++|+|||. +-+|+-++..|...|+. |+++.... .++.+
T Consensus 141 Tp~av~~lL~~-~~-i~l~Gk~vvViGrS~iVG~Pla~lL~~~~at-Vt~chs~t--------------------~~l~~ 197 (284)
T PRK14190 141 TPHGILELLKE-YN-IDISGKHVVVVGRSNIVGKPVGQLLLNENAT-VTYCHSKT--------------------KNLAE 197 (284)
T ss_pred CHHHHHHHHHH-cC-CCCCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEEeCCc--------------------hhHHH
Confidence 44445566544 32 4789999999999 77899999999999985 88885321 13344
Q ss_pred hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 306 CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
.+..||+||+|+|.+.. ++.++++. | .++||.++++
T Consensus 198 ~~~~ADIvI~AvG~p~~-i~~~~ik~---------g-avVIDvGi~~ 233 (284)
T PRK14190 198 LTKQADILIVAVGKPKL-ITADMVKE---------G-AVVIDVGVNR 233 (284)
T ss_pred HHHhCCEEEEecCCCCc-CCHHHcCC---------C-CEEEEeeccc
Confidence 56789999999999984 67888743 3 7899998766
|
|
| >PRK12861 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0018 Score=73.66 Aligned_cols=134 Identities=17% Similarity=0.249 Sum_probs=92.1
Q ss_pred HHHHhhCcccccccccc------CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCC--eEEEE
Q 010322 205 KHAISVGKRVRTETNIA------AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCT--KMVVV 276 (513)
Q Consensus 205 ~~ai~v~k~Vr~et~i~------~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~--~V~v~ 276 (513)
.+++.+=++.+.+..+. +++.+|..+++--|-+..+ .++.+.+|++.|||..|..+++.|...|++ +|+++
T Consensus 143 p~~f~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~g-k~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~ 221 (764)
T PRK12861 143 PECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVG-KSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVT 221 (764)
T ss_pred chHHHHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhC-CChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEE
Confidence 44555555555443332 4566666666544444433 567889999999999999999999999995 89999
Q ss_pred eCC------------HHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEE
Q 010322 277 NRS------------EERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRL 344 (513)
Q Consensus 277 nRs------------~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~v 344 (513)
|+. +.+ ..+++.. ...++.+++.++||.|-+++ + .+|++++++.+. ..++
T Consensus 222 D~~Gli~~~r~~~l~~~k-~~~a~~~--------~~~~L~eai~~advliG~S~-~-g~ft~e~v~~Ma-------~~PI 283 (764)
T PRK12861 222 DIEGVVYRGRTTLMDPDK-ERFAQET--------DARTLAEVIGGADVFLGLSA-G-GVLKAEMLKAMA-------ARPL 283 (764)
T ss_pred cCCCeeeCCCcccCCHHH-HHHHhhc--------CCCCHHHHHhcCCEEEEcCC-C-CCCCHHHHHHhc-------cCCE
Confidence 942 112 2444431 23578888999999999875 3 578999998864 2478
Q ss_pred EEeccCCC-CCCcc
Q 010322 345 FIDISVPR-NVGSC 357 (513)
Q Consensus 345 iiDlavPr-didp~ 357 (513)
++-+|.|- .+.|+
T Consensus 284 IFaLsNPtpE~~pe 297 (764)
T PRK12861 284 ILALANPTPEIFPE 297 (764)
T ss_pred EEECCCCCccCCHH
Confidence 88898884 45553
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00092 Score=69.75 Aligned_cols=78 Identities=23% Similarity=0.341 Sum_probs=55.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH---------------------HHHHHHHHHhC----Ccceeec
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE---------------------ERVAAICEELN----GVEIIYK 298 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~---------------------~ra~~la~~~g----~~~~~~~ 298 (513)
+...+|+|+|+|++|..++.+|...|+.+|+++|.+. .|++..++.+. ...+...
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 5688999999999999999999999999999999862 23333333332 1111111
Q ss_pred ----ccchHHhhcCCCcEEEEcCCCCc
Q 010322 299 ----PLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 299 ----~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
..++..+.+.++|+||+||....
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid~~Dn~~ 128 (339)
T PRK07688 102 VQDVTAEELEELVTGVDLIIDATDNFE 128 (339)
T ss_pred eccCCHHHHHHHHcCCCEEEEcCCCHH
Confidence 11244566889999999998764
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0018 Score=65.59 Aligned_cols=92 Identities=20% Similarity=0.302 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHh
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLS 305 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~ 305 (513)
++.+.+++.+. ++ .++.|++|+|||. .-+|+-++..|...|++ |+++.... .++.+
T Consensus 141 Tp~aii~lL~~-y~-i~l~Gk~vvViGrS~~VGkPla~lL~~~~AT-Vt~chs~T--------------------~dl~~ 197 (282)
T PRK14180 141 TPKGIMTMLRE-YG-IKTEGAYAVVVGASNVVGKPVSQLLLNAKAT-VTTCHRFT--------------------TDLKS 197 (282)
T ss_pred CHHHHHHHHHH-hC-CCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEEcCCC--------------------CCHHH
Confidence 34445566554 22 4789999999999 67899999999999985 88886431 12334
Q ss_pred hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 306 CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
.++.||+||+|+|.|.. ++.++++. | .++||.++.+
T Consensus 198 ~~k~ADIvIsAvGkp~~-i~~~~vk~---------g-avVIDvGin~ 233 (282)
T PRK14180 198 HTTKADILIVAVGKPNF-ITADMVKE---------G-AVVIDVGINH 233 (282)
T ss_pred HhhhcCEEEEccCCcCc-CCHHHcCC---------C-cEEEEecccc
Confidence 45789999999999977 67777743 2 7899998654
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0011 Score=67.60 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=51.8
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh-------------CCcc--------eeecccchHHh
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL-------------NGVE--------IIYKPLSEMLS 305 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~-------------g~~~--------~~~~~~~~~~~ 305 (513)
++|.|||+|.||..++..|...|. +|+++|+++++.+...+.+ +... ..+....+. +
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence 679999999999999999999998 5999999998775432211 1000 001112233 4
Q ss_pred hcCCCcEEEEcCCCCcc
Q 010322 306 CAADADVVFTSTASEAP 322 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~~ 322 (513)
.+.++|+||.|++....
T Consensus 82 ~~~~aDlVieav~e~~~ 98 (291)
T PRK06035 82 SLSDADFIVEAVPEKLD 98 (291)
T ss_pred HhCCCCEEEEcCcCcHH
Confidence 56899999999987653
|
|
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0031 Score=63.07 Aligned_cols=153 Identities=12% Similarity=0.137 Sum_probs=91.9
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCcccccccc-ccCCCchHHHH
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETN-IAAGAVSVSSA 230 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~-i~~~~~Sva~~ 230 (513)
...|+|+++.+.+++++++..-+|+..+.-. ..+....+...--...++++..+..... ....+...+++
T Consensus 59 ~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~~---------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~ 129 (323)
T cd05276 59 DILGLEVAGVVVAVGPGVTGWKVGDRVCALL---------AGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQ 129 (323)
T ss_pred CcccceeEEEEEeeCCCCCCCCCCCEEEEec---------CCCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHH
Confidence 3579999999999999998888899876310 0122222211111233444443322221 11234445555
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc-h----HH
Q 010322 231 AVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS-E----ML 304 (513)
Q Consensus 231 Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~-~----~~ 304 (513)
++.... ....+.+|+|.|+ |.+|..++..++..|+. |+++.++.++...+ ..++.. ..+.... + +.
T Consensus 130 ~~~~~~-----~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~-v~~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~~ 201 (323)
T cd05276 130 NLFQLG-----GLKAGETVLIHGGASGVGTAAIQLAKALGAR-VIATAGSEEKLEAC-RALGAD-VAINYRTEDFAEEVK 201 (323)
T ss_pred HHHHhc-----CCCCCCEEEEEcCcChHHHHHHHHHHHcCCE-EEEEcCCHHHHHHH-HHcCCC-EEEeCCchhHHHHHH
Confidence 543221 1346889999997 99999999999999986 88899988877444 556531 1111111 1 11
Q ss_pred hhc--CCCcEEEEcCCCCc
Q 010322 305 SCA--ADADVVFTSTASEA 321 (513)
Q Consensus 305 ~~l--~~aDVVI~AT~s~~ 321 (513)
... .++|++|++++...
T Consensus 202 ~~~~~~~~d~vi~~~g~~~ 220 (323)
T cd05276 202 EATGGRGVDVILDMVGGDY 220 (323)
T ss_pred HHhCCCCeEEEEECCchHH
Confidence 111 36899999998643
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00082 Score=70.58 Aligned_cols=78 Identities=21% Similarity=0.332 Sum_probs=56.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-------------------HHHHHHHHHhCCc--ceeecc---
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-------------------ERVAAICEELNGV--EIIYKP--- 299 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-------------------~ra~~la~~~g~~--~~~~~~--- 299 (513)
+.+.+|+|+|+|++|..++++|...|+.+++++|.+. .|++..++.+... .+.+.+
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 4678999999999999999999999999999988752 2554444444211 112221
Q ss_pred ---cchHHhhcCCCcEEEEcCCCCc
Q 010322 300 ---LSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 300 ---~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.++..+.+.++|+||+||....
T Consensus 106 ~i~~~~~~~~~~~~DvVvd~~d~~~ 130 (355)
T PRK05597 106 RLTWSNALDELRDADVILDGSDNFD 130 (355)
T ss_pred ecCHHHHHHHHhCCCEEEECCCCHH
Confidence 1234456789999999997754
|
|
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0034 Score=63.84 Aligned_cols=168 Identities=15% Similarity=0.163 Sum_probs=95.9
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCc--------cccccccccCC-
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGK--------RVRTETNIAAG- 223 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~Vr~et~i~~~- 223 (513)
..|||+++.+..+ |.+...+|+..+.... . .|...++.|.+++.++. .+..+......
T Consensus 60 ~~g~e~~G~V~~~--~~~~~~~Gd~V~~~~~--------~---~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~ 126 (326)
T cd08289 60 IPGIDLAGTVVES--NDPRFKPGDEVIVTSY--------D---LGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGT 126 (326)
T ss_pred CcccceeEEEEEc--CCCCCCCCCEEEEccc--------c---cCCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhh
Confidence 4699999998774 5677788998875321 0 11112344444444433 22222221111
Q ss_pred CchHHHHHHHHHHhhCCCCCC-CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc
Q 010322 224 AVSVSSAAVELALMKLPESSH-ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS 301 (513)
Q Consensus 224 ~~Sva~~Av~la~~~~~~~~l-~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~ 301 (513)
+...++.++..... . ... .+.+|+|+|+ |.+|.++++.++..|++ |+++.+++++.+ ++.++|.. .+....
T Consensus 127 ~~~ta~~~l~~~~~-~--~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~-v~~~~~~~~~~~-~~~~~g~~--~v~~~~ 199 (326)
T cd08289 127 AGFTAALSIHRLEE-N--GLTPEQGPVLVTGATGGVGSLAVSILAKLGYE-VVASTGKADAAD-YLKKLGAK--EVIPRE 199 (326)
T ss_pred HHHHHHHHHHHHHh-c--CCCCCCCEEEEEcCCchHHHHHHHHHHHCCCe-EEEEecCHHHHH-HHHHcCCC--EEEcch
Confidence 11122333322111 1 122 4679999999 99999999999999995 888999988874 44667642 122212
Q ss_pred h-----HHhh-cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 302 E-----MLSC-AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 302 ~-----~~~~-l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+ +... -.++|+||+|++.. .+ ...+..+. .+|..+.++.
T Consensus 200 ~~~~~~~~~~~~~~~d~vld~~g~~-~~--~~~~~~l~-----~~G~~i~~g~ 244 (326)
T cd08289 200 ELQEESIKPLEKQRWAGAVDPVGGK-TL--AYLLSTLQ-----YGGSVAVSGL 244 (326)
T ss_pred hHHHHHHHhhccCCcCEEEECCcHH-HH--HHHHHHhh-----cCCEEEEEee
Confidence 1 1111 13689999999873 32 34454443 3566666654
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00088 Score=81.38 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=59.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPL 323 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~v 323 (513)
...+|.+||.|.||..++..|...|.. |+++||++++++.+++. |. . ..++..++...+|+||.|.+.+..+
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~-v~v~dr~~~~~~~l~~~-Ga---~--~~~s~~e~a~~advVi~~l~~~~~v 74 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFK-VQAFEISTPLMEKFCEL-GG---H--RCDSPAEAAKDAAALVVVLSHPDQV 74 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCe-EEEEcCCHHHHHHHHHc-CC---e--ecCCHHHHHhcCCEEEEEcCChHHH
Confidence 467899999999999999999999985 99999999999888764 42 1 2345666677899999999887654
|
|
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0012 Score=67.93 Aligned_cols=178 Identities=16% Similarity=0.244 Sum_probs=101.9
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch-------HH----HHHHHhHhcCcccchhhHHHHHHHhhCcc----cccc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ-------VK----QVVKVGQGVVGFGRNISGLFKHAISVGKR----VRTE 217 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ-------vk----~A~~~a~~~~~~g~~L~~lf~~ai~v~k~----Vr~e 217 (513)
..|+|+++.+.+|+++++..-+|+..+... .. .....|......|...++.+..++.++.. ++..
T Consensus 59 ~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~lp~~ 138 (341)
T cd08297 59 IGGHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPIPDG 138 (341)
T ss_pred cCCcccceEEEEeCCCCCCCCCCCEEEEecCCCCCCCCccccCCCcccCCCccccccccCCcceeEEEeccccEEECCCC
Confidence 469999999999999998888999887521 00 11222222222222223445544444431 1211
Q ss_pred ----cccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccH-HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC
Q 010322 218 ----TNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGAGK-MGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN 291 (513)
Q Consensus 218 ----t~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~-mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g 291 (513)
.... ..+...++.++... ....+.+|+|.|+|+ +|.+++..++..|+ +|+++.+++++.+ ++..+|
T Consensus 139 ~~~~~~a~l~~~~~ta~~~~~~~------~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~-~~~~~g 210 (341)
T cd08297 139 LSFEQAAPLLCAGVTVYKALKKA------GLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLE-LAKELG 210 (341)
T ss_pred CCHHHHHHHHcchHHHHHHHHhc------CCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHH-HHHHcC
Confidence 1110 11122233343221 134689999999965 99999999999998 5899999988875 446676
Q ss_pred Ccceeecccc--h----HHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 292 GVEIIYKPLS--E----MLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 292 ~~~~~~~~~~--~----~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
.. .+.... + +.... .+.|+|++|.+++..+ ...++.+. .+|..+.+.
T Consensus 211 ~~--~v~~~~~~~~~~~~~~~~~~~~vd~vl~~~~~~~~~--~~~~~~l~-----~~g~~v~~g 265 (341)
T cd08297 211 AD--AFVDFKKSDDVEAVKELTGGGGAHAVVVTAVSAAAY--EQALDYLR-----PGGTLVCVG 265 (341)
T ss_pred Cc--EEEcCCCccHHHHHHHHhcCCCCCEEEEcCCchHHH--HHHHHHhh-----cCCEEEEec
Confidence 42 122211 1 22222 4689999987776543 33444432 245455554
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0018 Score=67.56 Aligned_cols=74 Identities=22% Similarity=0.321 Sum_probs=54.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc--h----HHhhc--CCCcEEEE
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS--E----MLSCA--ADADVVFT 315 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~--~----~~~~l--~~aDVVI~ 315 (513)
..+.+|+|.|+|.+|.++++.++..|+..|+++..+.++. +++.+++.. .+.+.. + +.... .++|+||+
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~-~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~d~vld 262 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKL-AKAKELGAT--HTVNAAKEDAVAAIREITGGRGVDVVVE 262 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHhCCc--eEecCCcccHHHHHHHHhCCCCCCEEEE
Confidence 4688999999999999999999999997788888888887 455667632 122211 1 22222 36899999
Q ss_pred cCCCC
Q 010322 316 STASE 320 (513)
Q Consensus 316 AT~s~ 320 (513)
|+++.
T Consensus 263 ~vg~~ 267 (367)
T cd08263 263 ALGKP 267 (367)
T ss_pred eCCCH
Confidence 99875
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0013 Score=64.76 Aligned_cols=79 Identities=30% Similarity=0.363 Sum_probs=55.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhCC----cceeecc-
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS-------------------EERVAAICEELNG----VEIIYKP- 299 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs-------------------~~ra~~la~~~g~----~~~~~~~- 299 (513)
+.+.+|+|+|+|++|..+++.|...|+.+++++|.+ ..|++.+++.+.. ..+...+
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 467899999999999999999999999999998643 1244444544421 1122111
Q ss_pred ---cchHHhhcCCCcEEEEcCCCCcc
Q 010322 300 ---LSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 300 ---~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.++..+.+.++|+||+|+..+..
T Consensus 99 ~i~~~~~~~~~~~~DvVi~~~d~~~~ 124 (228)
T cd00757 99 RLDAENAEELIAGYDLVLDCTDNFAT 124 (228)
T ss_pred eeCHHHHHHHHhCCCEEEEcCCCHHH
Confidence 12344567889999999987643
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0015 Score=64.81 Aligned_cols=79 Identities=20% Similarity=0.302 Sum_probs=55.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-------------------HHHHHHHHHhC----Ccceeecc-
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-------------------ERVAAICEELN----GVEIIYKP- 299 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-------------------~ra~~la~~~g----~~~~~~~~- 299 (513)
+.+.+|+|+|+|++|..++.+|...|+.+++++|.+. .|++.+++.+. ...+...+
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~ 101 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA 101 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 4678999999999999999999999999999988742 13333333332 11122111
Q ss_pred ---cchHHhhcCCCcEEEEcCCCCcc
Q 010322 300 ---LSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 300 ---~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.++..+.+.++|+||+|+.++..
T Consensus 102 ~i~~~~~~~~~~~~DlVvd~~D~~~~ 127 (240)
T TIGR02355 102 KLDDAELAALIAEHDIVVDCTDNVEV 127 (240)
T ss_pred cCCHHHHHHHhhcCCEEEEcCCCHHH
Confidence 12355667899999999988653
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >cd08249 enoyl_reductase_like enoyl_reductase_like | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0019 Score=66.63 Aligned_cols=165 Identities=13% Similarity=0.191 Sum_probs=93.5
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCc--------cccccccccC-C
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGK--------RVRTETNIAA-G 223 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~Vr~et~i~~-~ 223 (513)
..|+|+++.+..++++++..-+|+....-... ..+ +...++.|+.++.++. .+..+..... -
T Consensus 57 ~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~-------~~~--~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~ 127 (339)
T cd08249 57 ILGCDFAGTVVEVGSGVTRFKVGDRVAGFVHG-------GNP--NDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPV 127 (339)
T ss_pred eeeeeeeEEEEEeCCCcCcCCCCCEEEEEecc-------ccC--CCCCCCcccceEEechhheEECCCCCCHHHceecch
Confidence 46999999999999999888889987753210 000 1122445555554443 2222222111 1
Q ss_pred CchHHHHHHHHHHhhC-----CCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceee
Q 010322 224 AVSVSSAAVELALMKL-----PESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIY 297 (513)
Q Consensus 224 ~~Sva~~Av~la~~~~-----~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~ 297 (513)
+..+++.++....... ......+.+|+|.|+ |.+|.++++.++..|+. |+.+. +.++. ++++.+|.. ..+
T Consensus 128 ~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~~-v~~~~-~~~~~-~~~~~~g~~-~v~ 203 (339)
T cd08249 128 GLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYK-VITTA-SPKNF-DLVKSLGAD-AVF 203 (339)
T ss_pred HHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCCe-EEEEE-CcccH-HHHHhcCCC-EEE
Confidence 3334444432111000 001246899999997 89999999999999996 66655 44666 455777742 112
Q ss_pred ccc-chHHh----h-cCCCcEEEEcCCCCccCCChhhhhcC
Q 010322 298 KPL-SEMLS----C-AADADVVFTSTASEAPLFLKDHVQDL 332 (513)
Q Consensus 298 ~~~-~~~~~----~-l~~aDVVI~AT~s~~~vi~~~~l~~~ 332 (513)
... .+..+ . -.+.|+|+++++++..+ .+.++.+
T Consensus 204 ~~~~~~~~~~l~~~~~~~~d~vl~~~g~~~~~--~~~~~~l 242 (339)
T cd08249 204 DYHDPDVVEDIRAATGGKLRYALDCISTPESA--QLCAEAL 242 (339)
T ss_pred ECCCchHHHHHHHhcCCCeeEEEEeeccchHH--HHHHHHH
Confidence 111 11111 1 14689999999875443 3344443
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de |
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0011 Score=68.31 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=50.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC-HHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS-EERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs-~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
+.|++|.|||+|.||.++++.|...|.. |++.++. .++...+. +.|. .+. +..+.+..+|+||.|++..
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv~~~~~~~~~~~a~-~~Gv---~~~---s~~ea~~~ADiVvLaVpp~ 70 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIVGLRKGGASWKKAT-EDGF---KVG---TVEEAIPQADLIMNLLPDE 70 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEEEECcChhhHHHHH-HCCC---EEC---CHHHHHhcCCEEEEeCCcH
Confidence 3689999999999999999999999984 6665554 34443333 4442 222 2455678999999999965
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0062 Score=60.83 Aligned_cols=170 Identities=14% Similarity=0.150 Sum_probs=95.8
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccccC-CCchHHHHH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAA-GAVSVSSAA 231 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~~-~~~Sva~~A 231 (513)
..|+++++.+..+++++..+-+|+...... ..+..+.++..--...+.++..+..+..... .+...++.+
T Consensus 57 ~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~---------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~ 127 (320)
T cd05286 57 VLGVEGAGVVEAVGPGVTGFKVGDRVAYAG---------PPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYL 127 (320)
T ss_pred cCCcceeEEEEEECCCCCCCCCCCEEEEec---------CCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHH
Confidence 579999999999999888888898776421 1122222211111122333332222221111 111122222
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc-h----HHh
Q 010322 232 VELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS-E----MLS 305 (513)
Q Consensus 232 v~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~-~----~~~ 305 (513)
+.. .. ....|.+|+|.|+ |.+|.++++.+...|+. |+++.+++++.+. +.++|.. ..+...+ + +..
T Consensus 128 l~~---~~--~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~-v~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~ 199 (320)
T cd05286 128 LRE---TY--PVKPGDTVLVHAAAGGVGLLLTQWAKALGAT-VIGTVSSEEKAEL-ARAAGAD-HVINYRDEDFVERVRE 199 (320)
T ss_pred HHH---hc--CCCCCCEEEEEcCCchHHHHHHHHHHHcCCE-EEEEcCCHHHHHH-HHHCCCC-EEEeCCchhHHHHHHH
Confidence 211 11 2346899999995 99999999999999985 8888888888744 4667642 1221111 1 222
Q ss_pred hc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 306 CA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 306 ~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
.. .+.|+|++|++.. .. ...++.+. .+|..+.++
T Consensus 200 ~~~~~~~d~vl~~~~~~-~~--~~~~~~l~-----~~g~~v~~g 235 (320)
T cd05286 200 ITGGRGVDVVYDGVGKD-TF--EGSLDSLR-----PRGTLVSFG 235 (320)
T ss_pred HcCCCCeeEEEECCCcH-hH--HHHHHhhc-----cCcEEEEEe
Confidence 22 3689999998863 22 23444432 345555554
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0019 Score=73.52 Aligned_cols=139 Identities=17% Similarity=0.258 Sum_probs=92.2
Q ss_pred HHHHhhCcccccccccc------CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCC--eEEEE
Q 010322 205 KHAISVGKRVRTETNIA------AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCT--KMVVV 276 (513)
Q Consensus 205 ~~ai~v~k~Vr~et~i~------~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~--~V~v~ 276 (513)
.+++.+-++.+.+..|. +++..+..+++--+-+..+ .++.+.+|++.|+|..|..+++.|...|.+ +|+++
T Consensus 139 p~~f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~-~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~ 217 (752)
T PRK07232 139 PECFYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVG-KKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVC 217 (752)
T ss_pred chHHHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhC-CChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEE
Confidence 34555555555443332 4566666666544444443 567899999999999999999999999994 89999
Q ss_pred eCC----HHH---HHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 277 NRS----EER---VAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 277 nRs----~~r---a~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
|+. .+| .......|.. . .+..++.++++++||+|-+++ + .+|++++++.+. .+++++-+|
T Consensus 218 D~~G~i~~~r~~~~~~~k~~~a~---~-~~~~~l~~~i~~~~v~iG~s~-~-g~~~~~~v~~M~-------~~piifals 284 (752)
T PRK07232 218 DSKGVIYKGRTEGMDEWKAAYAV---D-TDARTLAEAIEGADVFLGLSA-A-GVLTPEMVKSMA-------DNPIIFALA 284 (752)
T ss_pred cCCCeecCCCcccccHHHHHHhc---c-CCCCCHHHHHcCCCEEEEcCC-C-CCCCHHHHHHhc-------cCCEEEecC
Confidence 863 112 1122222211 1 123578888999999999876 4 578999998864 247888888
Q ss_pred CCC-CCCcc
Q 010322 350 VPR-NVGSC 357 (513)
Q Consensus 350 vPr-didp~ 357 (513)
.|- .++|+
T Consensus 285 NP~~E~~p~ 293 (752)
T PRK07232 285 NPDPEITPE 293 (752)
T ss_pred CCCccCCHH
Confidence 874 44443
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0012 Score=65.71 Aligned_cols=78 Identities=26% Similarity=0.317 Sum_probs=54.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-------------------HHHHHHHHHhC----Ccceeecc-
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-------------------ERVAAICEELN----GVEIIYKP- 299 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-------------------~ra~~la~~~g----~~~~~~~~- 299 (513)
+..++|+|+|+|++|..++++|...|+.+++++|.+. .|++.+++.+. ...+...+
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~ 109 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA 109 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence 4689999999999999999999999999999987631 24433344332 11111111
Q ss_pred ---cchHHhhcCCCcEEEEcCCCCc
Q 010322 300 ---LSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 300 ---~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.++..+.+.++|+||+|+.+..
T Consensus 110 ~i~~~~~~~~~~~~DiVi~~~D~~~ 134 (245)
T PRK05690 110 RLDDDELAALIAGHDLVLDCTDNVA 134 (245)
T ss_pred cCCHHHHHHHHhcCCEEEecCCCHH
Confidence 1234456789999999998764
|
|
| >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0022 Score=66.89 Aligned_cols=181 Identities=15% Similarity=0.196 Sum_probs=102.5
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHH---HH-------HHhHhc------------------Ccc--cchhhH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQ---VV-------KVGQGV------------------VGF--GRNISG 202 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~---A~-------~~a~~~------------------~~~--g~~L~~ 202 (513)
..|+|+++.+..+++++..+.+|+..+.-.... .+ +.|... |.. +....+
T Consensus 56 ~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 135 (363)
T cd08279 56 VLGHEGAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLG 135 (363)
T ss_pred cccccceEEEEEeCCCccccCCCCEEEECCCCCCCCChhhcCCCcccCcccccccccccCCCcccccccCccccccccCc
Confidence 469999999999999998899999887632100 00 001000 000 001135
Q ss_pred HHHHHHhhCcc----cccccc----ccC-CCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeE
Q 010322 203 LFKHAISVGKR----VRTETN----IAA-GAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKM 273 (513)
Q Consensus 203 lf~~ai~v~k~----Vr~et~----i~~-~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V 273 (513)
.|++++.++.. ++.... ... .+...++.++. ... .-..+.+|+|.|+|.+|.++++.++..|+..|
T Consensus 136 ~~~~~~~~~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~~~---~~~--~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~V 210 (363)
T cd08279 136 TFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVV---NTA--RVRPGDTVAVIGCGGVGLNAIQGARIAGASRI 210 (363)
T ss_pred cceeeEEeccccEEECCCCCChHHeehhcchhHHHHHHHH---hcc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcE
Confidence 56665555542 121111 110 11122222211 111 23468899999999999999999999999768
Q ss_pred EEEeCCHHHHHHHHHHhCCcceeecccc------hHHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEE
Q 010322 274 VVVNRSEERVAAICEELNGVEIIYKPLS------EMLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLF 345 (513)
Q Consensus 274 ~v~nRs~~ra~~la~~~g~~~~~~~~~~------~~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~vi 345 (513)
+++.++.++. +++..+|.. .+.+.. .+.... .++|+++++++.+..+ ...+..+. .+|..+.
T Consensus 211 i~~~~~~~~~-~~~~~~g~~--~vv~~~~~~~~~~l~~~~~~~~vd~vld~~~~~~~~--~~~~~~l~-----~~G~~v~ 280 (363)
T cd08279 211 IAVDPVPEKL-ELARRFGAT--HTVNASEDDAVEAVRDLTDGRGADYAFEAVGRAATI--RQALAMTR-----KGGTAVV 280 (363)
T ss_pred EEEcCCHHHH-HHHHHhCCe--EEeCCCCccHHHHHHHHcCCCCCCEEEEcCCChHHH--HHHHHHhh-----cCCeEEE
Confidence 8888888887 455677642 222211 122222 4689999999865433 23344332 3565655
Q ss_pred Eec
Q 010322 346 IDI 348 (513)
Q Consensus 346 iDl 348 (513)
++.
T Consensus 281 ~g~ 283 (363)
T cd08279 281 VGM 283 (363)
T ss_pred Eec
Confidence 553
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00062 Score=58.54 Aligned_cols=69 Identities=26% Similarity=0.334 Sum_probs=47.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
++.|++|+|||+|++|..-++.|...|+ +|+|+.++.+ ..+ +. +.+. .....+.+.++|+||.||+.+.
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~~----~~~--~~--i~~~-~~~~~~~l~~~~lV~~at~d~~ 72 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEIE----FSE--GL--IQLI-RREFEEDLDGADLVFAATDDPE 72 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSEH----HHH--TS--CEEE-ESS-GGGCTTESEEEE-SS-HH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCchh----hhh--hH--HHHH-hhhHHHHHhhheEEEecCCCHH
Confidence 5789999999999999999999999998 5999999861 111 21 2222 1233456889999999998864
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0014 Score=69.28 Aligned_cols=78 Identities=23% Similarity=0.372 Sum_probs=56.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhC----Ccceeecc-
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS-------------------EERVAAICEELN----GVEIIYKP- 299 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs-------------------~~ra~~la~~~g----~~~~~~~~- 299 (513)
+.+.+|+|+|+|++|..++.+|...|+.+|+++|.+ ..|++.+++.+. ...+...+
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 468899999999999999999999999999998875 224544444442 11111111
Q ss_pred ---cchHHhhcCCCcEEEEcCCCCc
Q 010322 300 ---LSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 300 ---~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.++..+.+.++|+||+||-...
T Consensus 119 ~i~~~~~~~~~~~~DlVid~~Dn~~ 143 (370)
T PRK05600 119 RLTAENAVELLNGVDLVLDGSDSFA 143 (370)
T ss_pred ecCHHHHHHHHhCCCEEEECCCCHH
Confidence 1234556789999999998754
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0017 Score=56.58 Aligned_cols=88 Identities=20% Similarity=0.327 Sum_probs=62.4
Q ss_pred eEEEEcccHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCCccC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAK--GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASEAPL 323 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~--G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~~~v 323 (513)
+|+|||+|.+|+..+..+... +.+-+.++++++++++.+++.++. . .+.++.+.+. +.|+|+-||+.....
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~---~--~~~~~~~ll~~~~~D~V~I~tp~~~h~ 76 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGI---P--VYTDLEELLADEDVDAVIIATPPSSHA 76 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTS---E--EESSHHHHHHHTTESEEEEESSGGGHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcc---c--chhHHHHHHHhhcCCEEEEecCCcchH
Confidence 689999999999999888876 344456899999999999888874 2 3344444443 799999999986542
Q ss_pred CChhhhhcCCchhhhcCCcEEEEec
Q 010322 324 FLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 324 i~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+.+..+. ..|..++++=
T Consensus 77 ---~~~~~~l-----~~g~~v~~EK 93 (120)
T PF01408_consen 77 ---EIAKKAL-----EAGKHVLVEK 93 (120)
T ss_dssp ---HHHHHHH-----HTTSEEEEES
T ss_pred ---HHHHHHH-----HcCCEEEEEc
Confidence 2222222 1355788874
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0025 Score=63.96 Aligned_cols=79 Identities=23% Similarity=0.378 Sum_probs=59.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc---ceeeccc--ch---HHh---h----
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV---EIIYKPL--SE---MLS---C---- 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~---~~~~~~~--~~---~~~---~---- 306 (513)
...+++++|.|| |+||..+++.|..+|.. ++++.|+.+|+.++++++... .+.+.+. .+ +.. .
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~-liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYN-LILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence 457899999999 99999999999999985 999999999999999987531 1222222 22 111 1
Q ss_pred cCCCcEEEEcCCCCcc
Q 010322 307 AADADVVFTSTASEAP 322 (513)
Q Consensus 307 l~~aDVVI~AT~s~~~ 322 (513)
....|++|++.|-+.+
T Consensus 82 ~~~IdvLVNNAG~g~~ 97 (265)
T COG0300 82 GGPIDVLVNNAGFGTF 97 (265)
T ss_pred CCcccEEEECCCcCCc
Confidence 1268999999887654
|
|
| >PRK12862 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0037 Score=71.56 Aligned_cols=135 Identities=16% Similarity=0.231 Sum_probs=92.5
Q ss_pred HHHHHhhCcccccccccc------CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCC--eEEE
Q 010322 204 FKHAISVGKRVRTETNIA------AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCT--KMVV 275 (513)
Q Consensus 204 f~~ai~v~k~Vr~et~i~------~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~--~V~v 275 (513)
-.+++.+-++.+.+..|. +++.++..+++--+-+..+ .++.+.+|+|.|||..|..+++.|...|++ +|++
T Consensus 146 ~~~~f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~-~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~ 224 (763)
T PRK12862 146 APECFYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVG-KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWV 224 (763)
T ss_pred CchHHHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhC-CChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEE
Confidence 345565655555543332 4566666666544444443 567889999999999999999999999995 8999
Q ss_pred EeCC--------H---HHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEE
Q 010322 276 VNRS--------E---ERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRL 344 (513)
Q Consensus 276 ~nRs--------~---~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~v 344 (513)
+|+. . .....+++.. ...++.++++++|++|-+++ + .+|++++++.+. .+.+
T Consensus 225 ~D~~G~i~~~r~~~l~~~~~~~a~~~--------~~~~l~e~~~~~~v~iG~s~-~-g~~~~~~v~~M~-------~~pi 287 (763)
T PRK12862 225 TDIKGVVYEGRTELMDPWKARYAQKT--------DARTLAEVIEGADVFLGLSA-A-GVLKPEMVKKMA-------PRPL 287 (763)
T ss_pred EcCCCeeeCCCCccccHHHHHHhhhc--------ccCCHHHHHcCCCEEEEcCC-C-CCCCHHHHHHhc-------cCCE
Confidence 9942 1 1112344431 22578888999999999887 4 578999998864 3477
Q ss_pred EEeccCCC-CCCc
Q 010322 345 FIDISVPR-NVGS 356 (513)
Q Consensus 345 iiDlavPr-didp 356 (513)
++-+|.|- .+.|
T Consensus 288 ifalsNP~~E~~p 300 (763)
T PRK12862 288 IFALANPTPEILP 300 (763)
T ss_pred EEeCCCCcccCCH
Confidence 88888874 3444
|
|
| >smart00829 PKS_ER Enoylreductase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0038 Score=61.37 Aligned_cols=149 Identities=17% Similarity=0.220 Sum_probs=86.7
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccccC-CCchHHHHH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAA-GAVSVSSAA 231 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~~-~~~Sva~~A 231 (513)
..|+|+++.+..+++++...-+|+..+.-. .|....+..---...+.++..+..+..... .+...++.+
T Consensus 26 ~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~----------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~ 95 (288)
T smart00829 26 VLGGECAGVVTRVGPGVTGLAVGDRVMGLA----------PGSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYA 95 (288)
T ss_pred CCCceeEEEEEeeCCCCcCCCCCCEEEEEc----------CCceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHH
Confidence 569999999999999998888899876421 122222111111222333332222211111 122233333
Q ss_pred H-HHHHhhCCCCCCCCCeEEEEc-ccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-ceeeccc-chH----
Q 010322 232 V-ELALMKLPESSHATARMLVIG-AGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-EIIYKPL-SEM---- 303 (513)
Q Consensus 232 v-~la~~~~~~~~l~g~~VlVIG-aG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~~~-~~~---- 303 (513)
+ +.+ ....|.+|+|.| +|.+|.+++..++..|++ |+++.++.++.. ++..+|.. ...+... .+.
T Consensus 96 ~~~~~------~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~-v~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~ 167 (288)
T smart00829 96 LVDLA------RLRPGESVLIHAAAGGVGQAAIQLAQHLGAE-VFATAGSPEKRD-FLRELGIPDDHIFSSRDLSFADEI 167 (288)
T ss_pred HHHHh------CCCCCCEEEEecCCcHHHHHHHHHHHHcCCE-EEEEeCCHHHHH-HHHHcCCChhheeeCCCccHHHHH
Confidence 2 111 234688999999 599999999999999995 888999888874 45667631 1111111 111
Q ss_pred Hhhc--CCCcEEEEcCCC
Q 010322 304 LSCA--ADADVVFTSTAS 319 (513)
Q Consensus 304 ~~~l--~~aDVVI~AT~s 319 (513)
.... .++|++|++++.
T Consensus 168 ~~~~~~~~~d~vi~~~~~ 185 (288)
T smart00829 168 LRATGGRGVDVVLNSLAG 185 (288)
T ss_pred HHHhCCCCcEEEEeCCCH
Confidence 1222 368999999884
|
Enoylreductase in Polyketide synthases. |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00061 Score=63.63 Aligned_cols=68 Identities=28% Similarity=0.431 Sum_probs=51.6
Q ss_pred EEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceee---cccchHHhhcCCCcEEEEcCCCCc
Q 010322 249 MLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIY---KPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 249 VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~---~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
|+|+|+ |.+|+.+++.|...|. +|+++.|++++... .....+.. ...+.+.+++.++|+||.+.+.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~~~~~----~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPSKAED----SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGGGHHH----CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred eEEECCCChHHHHHHHHHHHCCC-EEEEEecCchhccc----ccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence 789998 9999999999999996 69999999998755 22211111 222346677889999999997643
|
... |
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0022 Score=65.06 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=93.3
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch----------HHHHHHHhHhcCcccchhhHHHHHHHhhCc--------cc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ----------VKQVVKVGQGVVGFGRNISGLFKHAISVGK--------RV 214 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ----------vk~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~V 214 (513)
..|||+++.+.++++++..+-+|+...... .++.++.|...+..|...++.|+.++.++. .+
T Consensus 60 ~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~ 139 (342)
T cd08266 60 ILGSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIPDNL 139 (342)
T ss_pred ecccceEEEEEEeCCCCCCCCCCCEEEEccccccccchhhccccccccccccccccccCcceeEEEEechHHceeCCCCC
Confidence 479999999999999998888999887531 123344444433333323444444443332 21
Q ss_pred cccccccC-CCchHHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC
Q 010322 215 RTETNIAA-GAVSVSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG 292 (513)
Q Consensus 215 r~et~i~~-~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~ 292 (513)
..+..... -+...+++++. ... ....+.+++|.|+ |.+|.+++..+...|++ |+++.++.++... +..++.
T Consensus 140 ~~~~a~~~~~~~~~a~~~l~---~~~--~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~-v~~~~~~~~~~~~-~~~~~~ 212 (342)
T cd08266 140 SFEEAAAAPLTFLTAWHMLV---TRA--RLRPGETVLVHGAGSGVGSAAIQIAKLFGAT-VIATAGSEDKLER-AKELGA 212 (342)
T ss_pred CHHHHHhhhhHHHHHHHHHH---Hhc--CCCCCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHH-HHHcCC
Confidence 11111110 11223333321 111 2346889999999 48999999999999985 8889999888744 445543
Q ss_pred cceeecccc-h----HHhhc--CCCcEEEEcCCCC
Q 010322 293 VEIIYKPLS-E----MLSCA--ADADVVFTSTASE 320 (513)
Q Consensus 293 ~~~~~~~~~-~----~~~~l--~~aDVVI~AT~s~ 320 (513)
. ..+...+ + +.... .++|++|++.+..
T Consensus 213 ~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~g~~ 246 (342)
T cd08266 213 D-YVIDYRKEDFVREVRELTGKRGVDVVVEHVGAA 246 (342)
T ss_pred C-eEEecCChHHHHHHHHHhCCCCCcEEEECCcHH
Confidence 1 1121111 1 11111 3689999998763
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0024 Score=64.86 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=54.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-------------------HHHHHHHHHhC----Ccceeec--
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-------------------ERVAAICEELN----GVEIIYK-- 298 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-------------------~ra~~la~~~g----~~~~~~~-- 298 (513)
+...+|+|+|+|++|..++.+|...|+.+|+++|.+. .|++..++.+. ...+...
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~ 104 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE 104 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 4688999999999999999999999999999988641 13333333332 1112211
Q ss_pred --ccchHHhhcCCCcEEEEcCCCC
Q 010322 299 --PLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 299 --~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
..++..+.+.++|+||+|+...
T Consensus 105 ~l~~~n~~~ll~~~DlVvD~~D~~ 128 (287)
T PRK08223 105 GIGKENADAFLDGVDVYVDGLDFF 128 (287)
T ss_pred ccCccCHHHHHhCCCEEEECCCCC
Confidence 1234566788999999999763
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0012 Score=70.61 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=54.4
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--------------cceeecccchHHhhcCCCcEE
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--------------VEIIYKPLSEMLSCAADADVV 313 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--------------~~~~~~~~~~~~~~l~~aDVV 313 (513)
+|.|||+|.||..++..|...|.. |+++|+++++.+.+...... ....+....+..+.+.++|+|
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~-V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHE-VTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCe-EEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 699999999999999999999984 99999999988776531100 000111224555667899999
Q ss_pred EEcCCCCc
Q 010322 314 FTSTASEA 321 (513)
Q Consensus 314 I~AT~s~~ 321 (513)
|.|++.+.
T Consensus 81 ii~vpt~~ 88 (411)
T TIGR03026 81 IICVPTPL 88 (411)
T ss_pred EEEeCCCC
Confidence 99999875
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0026 Score=64.32 Aligned_cols=91 Identities=21% Similarity=0.291 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEEccc-HHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhh
Q 010322 228 SSAAVELALMKLPESSHATARMLVIGAG-KMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSC 306 (513)
Q Consensus 228 a~~Av~la~~~~~~~~l~g~~VlVIGaG-~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~ 306 (513)
+.+.+++.+.. + -++.|++|+|||.| -+|+-++..|...|+. |+++.... .++.+.
T Consensus 141 p~avi~lL~~~-~-i~l~Gk~vvViGrS~~VG~Pla~lL~~~~At-Vti~hs~T--------------------~~l~~~ 197 (281)
T PRK14183 141 PLGVMELLEEY-E-IDVKGKDVCVVGASNIVGKPMAALLLNANAT-VDICHIFT--------------------KDLKAH 197 (281)
T ss_pred HHHHHHHHHHc-C-CCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCCCC--------------------cCHHHH
Confidence 44445665542 2 47899999999997 8999999999999985 88876421 123345
Q ss_pred cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 307 AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 307 l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
++.||+||+|+|-|.. ++.++++. | .++||.++-+
T Consensus 198 ~~~ADIvV~AvGkp~~-i~~~~vk~---------g-avvIDvGin~ 232 (281)
T PRK14183 198 TKKADIVIVGVGKPNL-ITEDMVKE---------G-AIVIDIGINR 232 (281)
T ss_pred HhhCCEEEEecCcccc-cCHHHcCC---------C-cEEEEeeccc
Confidence 6789999999999876 57777743 2 7899998543
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0023 Score=62.88 Aligned_cols=74 Identities=30% Similarity=0.535 Sum_probs=55.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-HhCCcceeeccc--chHHhh-cCCCcEEEEcCCCCc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE-ELNGVEIIYKPL--SEMLSC-AADADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~-~~g~~~~~~~~~--~~~~~~-l~~aDVVI~AT~s~~ 321 (513)
++++|+|+|.+|..+|+.|...|.. |++++++++++...+. ++....+..... +-+.++ +.++|++|.+|+...
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~-Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~ 78 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHN-VVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE 78 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCc-eEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH
Confidence 4799999999999999999999985 9999999999877444 443211111122 224444 679999999999964
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0032 Score=56.56 Aligned_cols=76 Identities=32% Similarity=0.454 Sum_probs=52.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-------------------HHHHHHHHHhC----Ccceeecc--c
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-------------------ERVAAICEELN----GVEIIYKP--L 300 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-------------------~ra~~la~~~g----~~~~~~~~--~ 300 (513)
.++|+|+|+|.+|..++..|...|+.+++++|.+. .|++.+++.+. ...+...+ +
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~ 81 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI 81 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc
Confidence 47899999999999999999999999999988741 14444444332 22222211 1
Q ss_pred --chHHhhcCCCcEEEEcCCCCc
Q 010322 301 --SEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 301 --~~~~~~l~~aDVVI~AT~s~~ 321 (513)
++..+.+.++|+||+|+.+..
T Consensus 82 ~~~~~~~~~~~~d~vi~~~d~~~ 104 (135)
T PF00899_consen 82 DEENIEELLKDYDIVIDCVDSLA 104 (135)
T ss_dssp SHHHHHHHHHTSSEEEEESSSHH
T ss_pred ccccccccccCCCEEEEecCCHH
Confidence 234455679999999988743
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0014 Score=68.93 Aligned_cols=71 Identities=17% Similarity=0.322 Sum_probs=50.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
++|+|||+|.||..++..|...|.. +.++++++... .++...+. ........+..+.+.++|+||.|++..
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~-v~i~~~~~~~~-~~~~a~~~-~~~~~~~~~~~~~~~~aDlVilavP~~ 71 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPD-VFIIGYDPSAA-QLARALGF-GVIDELAADLQRAAAEADLIVLAVPVD 71 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCC-eEEEEeCCCHH-HHHHHhcC-CCCcccccCHHHHhcCCCEEEEeCCHH
Confidence 4699999999999999999999974 78888876654 33333321 111112345566678999999999885
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0018 Score=66.04 Aligned_cols=73 Identities=15% Similarity=0.303 Sum_probs=50.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH-----------HHHHhCCcc-------e-eecccchHHhhc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAA-----------ICEELNGVE-------I-IYKPLSEMLSCA 307 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~-----------la~~~g~~~-------~-~~~~~~~~~~~l 307 (513)
++|.|||+|.||..++..|...|. +|+++|+++++++. +.+. +... . .....++. +.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~-~~~ 81 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKK-GKMSQEEADATLGRIRCTTNL-EEL 81 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHhceEeeCCH-HHh
Confidence 679999999999999999999997 59999999887642 1111 1000 0 01111233 457
Q ss_pred CCCcEEEEcCCCCcc
Q 010322 308 ADADVVFTSTASEAP 322 (513)
Q Consensus 308 ~~aDVVI~AT~s~~~ 322 (513)
.+||+||+|.+....
T Consensus 82 ~~aD~Vieav~e~~~ 96 (295)
T PLN02545 82 RDADFIIEAIVESED 96 (295)
T ss_pred CCCCEEEEcCccCHH
Confidence 899999999886543
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0011 Score=68.23 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=31.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
.+++|.|||+|.||..+++.|...|. +|++++|+.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGH-RVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 45789999999999999999999997 599999975
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0022 Score=64.78 Aligned_cols=68 Identities=25% Similarity=0.288 Sum_probs=50.1
Q ss_pred eEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
+|.|||+|.||..++..|...|. .+|+++||++++.+.+ ...|.. . ...+..+.. .+|+||.|++...
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~-~~~g~~--~--~~~~~~~~~-~aD~Vilavp~~~ 70 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKA-LELGLV--D--EIVSFEELK-KCDVIFLAIPVDA 70 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH-HHCCCC--c--ccCCHHHHh-cCCEEEEeCcHHH
Confidence 69999999999999999999886 3689999999887554 444421 1 112333333 5999999998764
|
|
| >cd05195 enoyl_red enoyl reductase of polyketide synthase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0058 Score=59.95 Aligned_cols=151 Identities=19% Similarity=0.224 Sum_probs=85.3
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccccC-CCchHHHHH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAA-GAVSVSSAA 231 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~~-~~~Sva~~A 231 (513)
..|+|+++.+..++++++.+-+|+....-. .+....+..---...+.++..+........ .+...++.+
T Consensus 30 ~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~----------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~ 99 (293)
T cd05195 30 PLGLECSGIVTRVGSGVTGLKVGDRVMGLA----------PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYA 99 (293)
T ss_pred ccceeeeEEEEeecCCccCCCCCCEEEEEe----------cCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHH
Confidence 579999999999999988888899876421 111111111001122223332222211111 122233333
Q ss_pred HHHHHhhCCCCCCCCCeEEEEc-ccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC-cceeecccc-h----HH
Q 010322 232 VELALMKLPESSHATARMLVIG-AGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG-VEIIYKPLS-E----ML 304 (513)
Q Consensus 232 v~la~~~~~~~~l~g~~VlVIG-aG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~-~~~~~~~~~-~----~~ 304 (513)
+... . ....|.+|+|+| +|.+|..+++.++..|++ |+++.++.++...+ ...++ ....+...+ + +.
T Consensus 100 ~~~~---~--~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~-v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 172 (293)
T cd05195 100 LVDL---A--RLQKGESVLIHAAAGGVGQAAIQLAQHLGAE-VFATVGSEEKREFL-RELGGPVDHIFSSRDLSFADGIL 172 (293)
T ss_pred HHHH---h--ccCCCCEEEEecCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHH-HHhCCCcceEeecCchhHHHHHH
Confidence 2111 1 234789999997 599999999999999985 88888887776444 44442 111111111 1 11
Q ss_pred hhc--CCCcEEEEcCCCC
Q 010322 305 SCA--ADADVVFTSTASE 320 (513)
Q Consensus 305 ~~l--~~aDVVI~AT~s~ 320 (513)
... .++|++|+|++.+
T Consensus 173 ~~~~~~~~d~vi~~~~~~ 190 (293)
T cd05195 173 RATGGRGVDVVLNSLSGE 190 (293)
T ss_pred HHhCCCCceEEEeCCCch
Confidence 222 3699999999976
|
Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase |
| >PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.006 Score=62.24 Aligned_cols=171 Identities=13% Similarity=0.118 Sum_probs=94.2
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCcccccccccc-CCCchHHHHH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIA-AGAVSVSSAA 231 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~-~~~~Sva~~A 231 (513)
..|+|+++.+..++++++...+|++.+...- ..+....+...--...+.++..+..+.... ..+...++.+
T Consensus 60 ~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~--------~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~ 131 (327)
T PRK10754 60 GLGTEAAGVVSKVGSGVKHIKVGDRVVYAQS--------ALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYL 131 (327)
T ss_pred ccCcceEEEEEEeCCCCCCCCCCCEEEECCC--------CCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4699999999999999998889998874210 011111111110112222333222211110 0011112222
Q ss_pred HHHHHhhCCCCCCCCCeEEEEc-ccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc-h----HHh
Q 010322 232 VELALMKLPESSHATARMLVIG-AGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS-E----MLS 305 (513)
Q Consensus 232 v~la~~~~~~~~l~g~~VlVIG-aG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~-~----~~~ 305 (513)
+. . .. ....|.+|+|.| +|.+|.++++.++..|++ |+.+.++.++. .+++++|.. ..+...+ + +..
T Consensus 132 l~---~-~~-~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~-v~~~~~~~~~~-~~~~~~g~~-~~~~~~~~~~~~~~~~ 203 (327)
T PRK10754 132 LR---K-TY-EIKPDEQFLFHAAAGGVGLIACQWAKALGAK-LIGTVGSAQKA-QRAKKAGAW-QVINYREENIVERVKE 203 (327)
T ss_pred HH---h-hc-CCCCCCEEEEEeCCcHHHHHHHHHHHHcCCE-EEEEeCCHHHH-HHHHHCCCC-EEEcCCCCcHHHHHHH
Confidence 11 1 11 124689999996 599999999999999996 77788888887 455677642 1221111 1 122
Q ss_pred hc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 306 CA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 306 ~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
.. .+.|++|+|++.. .. .+.+..+. .+|..+.++
T Consensus 204 ~~~~~~~d~vl~~~~~~-~~--~~~~~~l~-----~~g~~v~~g 239 (327)
T PRK10754 204 ITGGKKVRVVYDSVGKD-TW--EASLDCLQ-----RRGLMVSFG 239 (327)
T ss_pred HcCCCCeEEEEECCcHH-HH--HHHHHHhc-----cCCEEEEEc
Confidence 22 3689999999863 22 23444432 356555554
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0033 Score=63.66 Aligned_cols=92 Identities=16% Similarity=0.286 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHh
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLS 305 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~ 305 (513)
++.+.+++.+. ++ .++.|++|+|||- .-+|+-++..|...|++ |+++...- .++.+
T Consensus 139 Tp~avi~lL~~-~~-i~l~Gk~vvViGrS~iVGkPla~lL~~~~at-Vtichs~T--------------------~~l~~ 195 (282)
T PRK14169 139 TPYGIMALLDA-YD-IDVAGKRVVIVGRSNIVGRPLAGLMVNHDAT-VTIAHSKT--------------------RNLKQ 195 (282)
T ss_pred CHHHHHHHHHH-hC-CCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEECCCC--------------------CCHHH
Confidence 34444566544 22 4689999999999 67899999999999985 88885321 12334
Q ss_pred hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 306 CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
.+..|||||+|+|.|.. ++.++++. | .++||.++-+
T Consensus 196 ~~~~ADIvI~AvG~p~~-i~~~~vk~---------G-avVIDvGin~ 231 (282)
T PRK14169 196 LTKEADILVVAVGVPHF-IGADAVKP---------G-AVVIDVGISR 231 (282)
T ss_pred HHhhCCEEEEccCCcCc-cCHHHcCC---------C-cEEEEeeccc
Confidence 45789999999999976 67777743 3 6899998644
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0047 Score=62.27 Aligned_cols=79 Identities=18% Similarity=0.284 Sum_probs=54.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhCCc--ceeecc---
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS-------------------EERVAAICEELNGV--EIIYKP--- 299 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs-------------------~~ra~~la~~~g~~--~~~~~~--- 299 (513)
+.+.+|+|+|+|++|..++.+|...|+.+|+++|.+ ..|++.+++.+... .+.+..
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~ 107 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD 107 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec
Confidence 578899999999999999999999999999998864 12344444444211 111211
Q ss_pred ---cchHHhhc-CCCcEEEEcCCCCcc
Q 010322 300 ---LSEMLSCA-ADADVVFTSTASEAP 322 (513)
Q Consensus 300 ---~~~~~~~l-~~aDVVI~AT~s~~~ 322 (513)
.++..+.+ .++|+||+|+....+
T Consensus 108 ~i~~e~~~~ll~~~~D~VIdaiD~~~~ 134 (268)
T PRK15116 108 FITPDNVAEYMSAGFSYVIDAIDSVRP 134 (268)
T ss_pred ccChhhHHHHhcCCCCEEEEcCCCHHH
Confidence 12334444 379999999987544
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0035 Score=63.62 Aligned_cols=92 Identities=17% Similarity=0.302 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHh
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLS 305 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~ 305 (513)
++.+.+++.+. ++ .++.|++|+|||. +-+|+-++..|...|++ |+++.... .++.+
T Consensus 138 Tp~avi~lL~~-~~-i~l~Gk~vvViGrS~iVGkPla~lL~~~~aT-Vtichs~T--------------------~~l~~ 194 (287)
T PRK14173 138 TPAGVVRLLKH-YG-IPLAGKEVVVVGRSNIVGKPLAALLLREDAT-VTLAHSKT--------------------QDLPA 194 (287)
T ss_pred CHHHHHHHHHH-cC-CCCCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEeCCCC--------------------CCHHH
Confidence 34444566554 32 4689999999999 77899999999999985 88876431 12344
Q ss_pred hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 306 CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
.+..||+||+|+|.|.. ++.++++. | .++||.++.+
T Consensus 195 ~~~~ADIvIsAvGkp~~-i~~~~vk~---------G-avVIDVGin~ 230 (287)
T PRK14173 195 VTRRADVLVVAVGRPHL-ITPEMVRP---------G-AVVVDVGINR 230 (287)
T ss_pred HHhhCCEEEEecCCcCc-cCHHHcCC---------C-CEEEEccCcc
Confidence 56789999999999965 57787743 3 6899998765
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0035 Score=63.54 Aligned_cols=91 Identities=15% Similarity=0.200 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHh
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLS 305 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~ 305 (513)
++.+.+++.+.. + .++.|++|+|||. .-+|+-++..|...|+. |++++..- .++.+
T Consensus 142 Tp~avi~ll~~y-~-i~l~Gk~vvViGrS~iVGkPla~lL~~~~at-Vt~chs~T--------------------~~l~~ 198 (284)
T PRK14177 142 TPYGMVLLLKEY-G-IDVTGKNAVVVGRSPILGKPMAMLLTEMNAT-VTLCHSKT--------------------QNLPS 198 (284)
T ss_pred CHHHHHHHHHHh-C-CCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCCCC--------------------CCHHH
Confidence 344455665543 2 4789999999999 77899999999999985 88887421 12344
Q ss_pred hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCC
Q 010322 306 CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVP 351 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavP 351 (513)
..+.||+||+|+|.+.. ++.++++. | .++||.++-
T Consensus 199 ~~~~ADIvIsAvGk~~~-i~~~~ik~---------g-avVIDvGin 233 (284)
T PRK14177 199 IVRQADIIVGAVGKPEF-IKADWISE---------G-AVLLDAGYN 233 (284)
T ss_pred HHhhCCEEEEeCCCcCc-cCHHHcCC---------C-CEEEEecCc
Confidence 56789999999999976 57777743 2 689999864
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0025 Score=70.40 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=57.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC--------C-----cc---eeecccchHHh
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN--------G-----VE---IIYKPLSEMLS 305 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g--------~-----~~---~~~~~~~~~~~ 305 (513)
...|++|+|.|+ |.+|+.+++.|...|+ +|+++.|+.+++..+...+. . .. ..+...+++.+
T Consensus 77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~ 155 (576)
T PLN03209 77 TKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP 155 (576)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence 357899999998 9999999999999998 49999999988876655321 0 01 11122234556
Q ss_pred hcCCCcEEEEcCCCC
Q 010322 306 CAADADVVFTSTASE 320 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~ 320 (513)
.+.++|+||++.|..
T Consensus 156 aLggiDiVVn~AG~~ 170 (576)
T PLN03209 156 ALGNASVVICCIGAS 170 (576)
T ss_pred HhcCCCEEEEccccc
Confidence 678999999998764
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0023 Score=68.93 Aligned_cols=76 Identities=22% Similarity=0.268 Sum_probs=51.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-HHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-ERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
+.+++|+|+|+|.+|..++..|...|+. |++++++. +......+++....+.+...+...+...++|+||.+++.+
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~ 79 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAK-VILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVP 79 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCC
Confidence 5789999999999999999999999984 99999975 3332322332211122222222223456799999998864
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0038 Score=63.08 Aligned_cols=92 Identities=17% Similarity=0.307 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHh
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLS 305 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~ 305 (513)
++.+.+++.+. ++ -++.|++|+|||- +-+|+-++..|...|++ |+++...- .++.+
T Consensus 141 Tp~av~~lL~~-~~-i~l~Gk~vvViGrS~~VGkPla~lL~~~~At-Vt~chs~T--------------------~~l~~ 197 (278)
T PRK14172 141 TPNSVITLIKS-LN-IDIEGKEVVVIGRSNIVGKPVAQLLLNENAT-VTICHSKT--------------------KNLKE 197 (278)
T ss_pred CHHHHHHHHHH-hC-CCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEeCCCC--------------------CCHHH
Confidence 34444566554 22 4689999999999 77899999999999985 88887421 12344
Q ss_pred hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 306 CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
....||+||+|+|.|.. ++.++++. | .++||.++-+
T Consensus 198 ~~~~ADIvIsAvGkp~~-i~~~~ik~---------g-avVIDvGin~ 233 (278)
T PRK14172 198 VCKKADILVVAIGRPKF-IDEEYVKE---------G-AIVIDVGTSS 233 (278)
T ss_pred HHhhCCEEEEcCCCcCc-cCHHHcCC---------C-cEEEEeeccc
Confidence 55789999999999976 67777743 3 7899987543
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0041 Score=63.00 Aligned_cols=91 Identities=23% Similarity=0.366 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhh
Q 010322 228 SSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSC 306 (513)
Q Consensus 228 a~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~ 306 (513)
+.+.+++.+. ++ -++.|++|+|||. .-+|+-++..|...|++ |+++.... .++.+.
T Consensus 141 p~avi~lL~~-~~-i~l~Gk~vvVvGrS~iVGkPla~lL~~~~at-Vtichs~T--------------------~~l~~~ 197 (284)
T PRK14170 141 PAGIIELIKS-TG-TQIEGKRAVVIGRSNIVGKPVAQLLLNENAT-VTIAHSRT--------------------KDLPQV 197 (284)
T ss_pred HHHHHHHHHH-hC-CCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCCCC--------------------CCHHHH
Confidence 4444566543 32 4789999999999 66899999999999985 88875421 134455
Q ss_pred cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 307 AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 307 l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
+..|||||+|+|.+.. ++.++++. | .++||.++.+
T Consensus 198 ~~~ADIvI~AvG~~~~-i~~~~vk~---------G-avVIDvGin~ 232 (284)
T PRK14170 198 AKEADILVVATGLAKF-VKKDYIKP---------G-AIVIDVGMDR 232 (284)
T ss_pred HhhCCEEEEecCCcCc-cCHHHcCC---------C-CEEEEccCcc
Confidence 6789999999999986 67777743 3 6899998654
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0027 Score=65.78 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=53.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----Hh--CCcceeecccchHHhhcCCCcEEEEcCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE----EL--NGVEIIYKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~----~~--g~~~~~~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
..++|.|||+|.||..++..+...|..+|.++|++++++...+. .. .+....+....+. +.+.+||+||.+.+
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~tag 83 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTAG 83 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECCC
Confidence 45789999999999999999998897569999998875432221 11 1111233333454 46799999999987
Q ss_pred CCc
Q 010322 319 SEA 321 (513)
Q Consensus 319 s~~ 321 (513)
.+.
T Consensus 84 ~~~ 86 (321)
T PTZ00082 84 LTK 86 (321)
T ss_pred CCC
Confidence 753
|
|
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0086 Score=60.27 Aligned_cols=173 Identities=17% Similarity=0.181 Sum_probs=95.0
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhH-hcCcccchhhHHHHHHHhhCccccccccc-cCCCchHHHH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQ-GVVGFGRNISGLFKHAISVGKRVRTETNI-AAGAVSVSSA 230 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~-~~~~~g~~L~~lf~~ai~v~k~Vr~et~i-~~~~~Sva~~ 230 (513)
..|+|+++.+.+|+. +..-+|+..+.-.- ..+. ..|....+...-....+++++.+..+... ...+...++.
T Consensus 59 ~~g~e~~G~v~~vG~--~~~~~Gd~V~~~~~----~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~ 132 (320)
T cd08243 59 VLGIEAVGEVEEAPG--GTFTPGQRVATAMG----GMGRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWG 132 (320)
T ss_pred cccceeEEEEEEecC--CCCCCCCEEEEecC----CCCCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHH
Confidence 469999999999984 45677887764210 0000 00111111111111233333333322211 1123344454
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccch----HHh
Q 010322 231 AVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSE----MLS 305 (513)
Q Consensus 231 Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~----~~~ 305 (513)
++.... ....|.+|+|.|+ |.+|.++++.++..|++ |+.+.+++++. +++.++|... .+....+ +..
T Consensus 133 ~l~~~~-----~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~-v~~~~~~~~~~-~~~~~~g~~~-~~~~~~~~~~~i~~ 204 (320)
T cd08243 133 SLFRSL-----GLQPGDTLLIRGGTSSVGLAALKLAKALGAT-VTATTRSPERA-ALLKELGADE-VVIDDGAIAEQLRA 204 (320)
T ss_pred HHHHhc-----CCCCCCEEEEEcCCChHHHHHHHHHHHcCCE-EEEEeCCHHHH-HHHHhcCCcE-EEecCccHHHHHHH
Confidence 433211 2346899999998 99999999999999986 88888888887 4456676421 1111112 111
Q ss_pred hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 306 CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
.-.++|++++|++.. .+ .+.++.+. ++|..+.++
T Consensus 205 ~~~~~d~vl~~~~~~-~~--~~~~~~l~-----~~g~~v~~g 238 (320)
T cd08243 205 APGGFDKVLELVGTA-TL--KDSLRHLR-----PGGIVCMTG 238 (320)
T ss_pred hCCCceEEEECCChH-HH--HHHHHHhc-----cCCEEEEEc
Confidence 124799999999863 22 33444433 346555554
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0045 Score=62.77 Aligned_cols=167 Identities=17% Similarity=0.169 Sum_probs=93.7
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCc--------cccccccccCC-
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGK--------RVRTETNIAAG- 223 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~Vr~et~i~~~- 223 (513)
..|||+++.+.++ |.+...+|+..+.... ..|...++.|.+++.++. .+..+......
T Consensus 60 ~~g~e~~G~v~~~--~~~~~~~Gd~V~~~~~-----------~~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~ 126 (325)
T cd05280 60 TPGIDAAGTVVSS--DDPRFREGDEVLVTGY-----------DLGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGT 126 (325)
T ss_pred ccCcccEEEEEEe--CCCCCCCCCEEEEccc-----------ccCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHH
Confidence 4699999999888 6777888998876321 011111333444443333 22222111100
Q ss_pred CchHHHHHHHHHHhhCCCCCC-CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc
Q 010322 224 AVSVSSAAVELALMKLPESSH-ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS 301 (513)
Q Consensus 224 ~~Sva~~Av~la~~~~~~~~l-~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~ 301 (513)
....++.++..... . +.. .+.+|+|.|+ |.+|.++++.++..|+. |+++.++.++.+ ++.++|.. .+....
T Consensus 127 ~~~ta~~~l~~~~~-~--~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~-v~~~~~~~~~~~-~~~~~g~~--~~~~~~ 199 (325)
T cd05280 127 AGFTAALSVHRLED-N--GQTPEDGPVLVTGATGGVGSIAVAILAKLGYT-VVALTGKEEQAD-YLKSLGAS--EVLDRE 199 (325)
T ss_pred HHHHHHHHHHHHhh-c--cCCCCCCEEEEECCccHHHHHHHHHHHHcCCE-EEEEeCCHHHHH-HHHhcCCc--EEEcch
Confidence 11122333221111 1 112 3468999998 99999999999999996 999999988874 44667742 122222
Q ss_pred h----HHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 302 E----MLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 302 ~----~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
+ ....+ .++|+||++++.+ .+ .+.++.+. .+|..+.++
T Consensus 200 ~~~~~~~~~~~~~~~d~vi~~~~~~-~~--~~~~~~l~-----~~g~~v~~g 243 (325)
T cd05280 200 DLLDESKKPLLKARWAGAIDTVGGD-VL--ANLLKQTK-----YGGVVASCG 243 (325)
T ss_pred hHHHHHHHHhcCCCccEEEECCchH-HH--HHHHHhhc-----CCCEEEEEe
Confidence 1 11111 3689999998874 22 34455443 345555454
|
Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0034 Score=56.83 Aligned_cols=74 Identities=22% Similarity=0.425 Sum_probs=50.5
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-------------------HHHHHHHHHhC----Ccceeecc--c--
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-------------------ERVAAICEELN----GVEIIYKP--L-- 300 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-------------------~ra~~la~~~g----~~~~~~~~--~-- 300 (513)
+|+|+|+|.+|..+++.|...|+.+++++|.+. .|++.+++.+. ...+...+ .
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 589999999999999999999999999998641 24444444432 11111111 1
Q ss_pred chHHhhcCCCcEEEEcCCCCc
Q 010322 301 SEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 301 ~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.+..+.+.++|+||+|+.+..
T Consensus 81 ~~~~~~~~~~diVi~~~d~~~ 101 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNIA 101 (143)
T ss_pred hhHHHHhcCCCEEEECCCCHH
Confidence 112355789999999998843
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.004 Score=63.10 Aligned_cols=91 Identities=18% Similarity=0.319 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhh
Q 010322 228 SSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSC 306 (513)
Q Consensus 228 a~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~ 306 (513)
+.+.+++.+. ++ .++.|++|+|||- .-+|+-++..|...|++ |+++...- .++.+.
T Consensus 141 p~avi~lL~~-y~-i~l~Gk~vvVvGrS~iVGkPla~lL~~~~at-Vt~chs~T--------------------~nl~~~ 197 (282)
T PRK14166 141 PLGVMKLLKA-YE-IDLEGKDAVIIGASNIVGRPMATMLLNAGAT-VSVCHIKT--------------------KDLSLY 197 (282)
T ss_pred HHHHHHHHHH-hC-CCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCCCC--------------------CCHHHH
Confidence 4444566554 22 4689999999999 67899999999988885 88877531 123445
Q ss_pred cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 307 AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 307 l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
...||+||+|+|.|.. ++.++++. | .++||.++-+
T Consensus 198 ~~~ADIvIsAvGkp~~-i~~~~vk~---------G-avVIDvGin~ 232 (282)
T PRK14166 198 TRQADLIIVAAGCVNL-LRSDMVKE---------G-VIVVDVGINR 232 (282)
T ss_pred HhhCCEEEEcCCCcCc-cCHHHcCC---------C-CEEEEecccc
Confidence 5789999999999976 57777743 2 7899998644
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0045 Score=61.14 Aligned_cols=79 Identities=19% Similarity=0.306 Sum_probs=53.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-------------------HHHHHHHHHhCCc--ceeeccc--
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-------------------ERVAAICEELNGV--EIIYKPL-- 300 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-------------------~ra~~la~~~g~~--~~~~~~~-- 300 (513)
+.+.+|+|+|+|++|..++..|...|+.+++++|.+. .|++.+++.+... .+.+...
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~ 88 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE 88 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence 4678999999999999999999999999999988641 2444444444211 1111111
Q ss_pred ----chHHhhc-CCCcEEEEcCCCCcc
Q 010322 301 ----SEMLSCA-ADADVVFTSTASEAP 322 (513)
Q Consensus 301 ----~~~~~~l-~~aDVVI~AT~s~~~ 322 (513)
++..+.+ .++|+||+|+.+...
T Consensus 89 ~i~~~~~~~l~~~~~D~VvdaiD~~~~ 115 (231)
T cd00755 89 FLTPDNSEDLLGGDPDFVVDAIDSIRA 115 (231)
T ss_pred ecCHhHHHHHhcCCCCEEEEcCCCHHH
Confidence 2333444 369999999887654
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PTZ00354 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0083 Score=60.98 Aligned_cols=150 Identities=12% Similarity=0.169 Sum_probs=86.3
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCcccccccccc-CCCchHHHHH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIA-AGAVSVSSAA 231 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~-~~~~Sva~~A 231 (513)
..|+|+++.+.+|+++++...+|+..+.-- ..|....+...--...+.+++.+..+.... ..+...++.+
T Consensus 61 ~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~---------~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~ 131 (334)
T PTZ00354 61 ILGLEVAGYVEDVGSDVKRFKEGDRVMALL---------PGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQL 131 (334)
T ss_pred ccceeeEEEEEEeCCCCCCCCCCCEEEEec---------CCCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 479999999999999998888999875310 012222211110112233333222211111 1122233333
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc------hHH
Q 010322 232 VELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS------EML 304 (513)
Q Consensus 232 v~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~------~~~ 304 (513)
+... . ....|.+|+|.|+ |.+|.++++.++..|+. ++++.+++++.+. +..+|. ...+.... .+.
T Consensus 132 l~~~----~-~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~-v~~~~~~~~~~~~-~~~~g~-~~~~~~~~~~~~~~~~~ 203 (334)
T PTZ00354 132 LKKH----G-DVKKGQSVLIHAGASGVGTAAAQLAEKYGAA-TIITTSSEEKVDF-CKKLAA-IILIRYPDEEGFAPKVK 203 (334)
T ss_pred HHHh----c-CCCCCCEEEEEcCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHH-HHHcCC-cEEEecCChhHHHHHHH
Confidence 2211 1 1236889999995 99999999999999986 6678888888744 466764 21221111 111
Q ss_pred hhc--CCCcEEEEcCCC
Q 010322 305 SCA--ADADVVFTSTAS 319 (513)
Q Consensus 305 ~~l--~~aDVVI~AT~s 319 (513)
... .++|++|++++.
T Consensus 204 ~~~~~~~~d~~i~~~~~ 220 (334)
T PTZ00354 204 KLTGEKGVNLVLDCVGG 220 (334)
T ss_pred HHhCCCCceEEEECCch
Confidence 222 368999999875
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0026 Score=65.76 Aligned_cols=76 Identities=18% Similarity=0.318 Sum_probs=57.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCc-----ceeecccchHHhhcCCCcEEEEcC
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGV-----EIIYKPLSEMLSCAADADVVFTST 317 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~-----~~~~~~~~~~~~~l~~aDVVI~AT 317 (513)
..+.+|.|||+|.+|..++..|...|. .++.++|++.+++...+..+... ...+. .+..+.+++||+||.+.
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~--~~~~~~~~~adivIita 81 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY--AGDYSDCKDADLVVITA 81 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE--eCCHHHhCCCCEEEEec
Confidence 467899999999999999999998887 47999999988776666655421 11111 22345578999999998
Q ss_pred CCCc
Q 010322 318 ASEA 321 (513)
Q Consensus 318 ~s~~ 321 (513)
+.|.
T Consensus 82 g~~~ 85 (315)
T PRK00066 82 GAPQ 85 (315)
T ss_pred CCCC
Confidence 8753
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0025 Score=70.12 Aligned_cols=76 Identities=24% Similarity=0.329 Sum_probs=53.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----------HhCCcc--------eeecccchHHhhc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE----------ELNGVE--------IIYKPLSEMLSCA 307 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~----------~~g~~~--------~~~~~~~~~~~~l 307 (513)
-++|.|||+|.||..++..|...|.. |+++|++++.++...+ +-|... ..+.+..+.. .+
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~-V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~-~~ 84 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHT-VLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALA-DL 84 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hh
Confidence 46899999999999999999999985 9999999987755211 112100 0112233443 35
Q ss_pred CCCcEEEEcCCCCccC
Q 010322 308 ADADVVFTSTASEAPL 323 (513)
Q Consensus 308 ~~aDVVI~AT~s~~~v 323 (513)
.++|+||+|.+....+
T Consensus 85 ~~aDlViEav~E~~~v 100 (507)
T PRK08268 85 ADCDLVVEAIVERLDV 100 (507)
T ss_pred CCCCEEEEcCcccHHH
Confidence 6999999998876543
|
|
| >cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1 | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0053 Score=63.18 Aligned_cols=166 Identities=17% Similarity=0.212 Sum_probs=94.5
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhh--------Ccccccccccc-CC
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISV--------GKRVRTETNIA-AG 223 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v--------~k~Vr~et~i~-~~ 223 (513)
..|+|+++.+..++++++.+-+|++.+...-. +.++.|.+++.+ +..+..+.... ..
T Consensus 76 ~~G~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~--------------~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~ 141 (350)
T cd08248 76 TLGRDCSGVVVDIGSGVKSFEIGDEVWGAVPP--------------WSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPY 141 (350)
T ss_pred eecceeEEEEEecCCCcccCCCCCEEEEecCC--------------CCCccceeEEEecHHHeecCCCCCCHHHHhhchh
Confidence 57999999999999999988999988752210 012333333333 33222222111 11
Q ss_pred CchHHHHHHHHHHhhCCCCC--CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc
Q 010322 224 AVSVSSAAVELALMKLPESS--HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL 300 (513)
Q Consensus 224 ~~Sva~~Av~la~~~~~~~~--l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~ 300 (513)
+...++.++..... + .. ..|.+|+|.|+ |.+|.+++..++..|+. |+++.++ ++. .++++++.. ..+...
T Consensus 142 ~~~ta~~~l~~~~~-~--~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~-v~~~~~~-~~~-~~~~~~g~~-~~~~~~ 214 (350)
T cd08248 142 AGLTAWSALVNVGG-L--NPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAH-VTTTCST-DAI-PLVKSLGAD-DVIDYN 214 (350)
T ss_pred HHHHHHHHHHHhcc-C--CCccCCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCc-chH-HHHHHhCCc-eEEECC
Confidence 22233333221110 1 01 24899999995 99999999999999995 7776665 344 566777642 112111
Q ss_pred c-hHHh---hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 301 S-EMLS---CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 301 ~-~~~~---~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
+ +... ...++|++|++++.+ .. ...++.+. ++|+.+.++
T Consensus 215 ~~~~~~~l~~~~~vd~vi~~~g~~-~~--~~~~~~l~-----~~G~~v~~g 257 (350)
T cd08248 215 NEDFEEELTERGKFDVILDTVGGD-TE--KWALKLLK-----KGGTYVTLV 257 (350)
T ss_pred ChhHHHHHHhcCCCCEEEECCChH-HH--HHHHHHhc-----cCCEEEEec
Confidence 1 1111 135799999999875 22 33444433 356565554
|
Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >cd08252 AL_MDR Arginate lyase and other MDR family members | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.011 Score=60.40 Aligned_cols=147 Identities=16% Similarity=0.182 Sum_probs=85.9
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhh--------CccccccccccCCC
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISV--------GKRVRTETNIAAGA 224 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v--------~k~Vr~et~i~~~~ 224 (513)
..|+|+++.+..++++++...+|++.+..-. . ..++.|.+++.+ +..+..+.... .+
T Consensus 62 ~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~---------~-----~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~-~~ 126 (336)
T cd08252 62 ILGWDASGVVEAVGSEVTLFKVGDEVYYAGD---------I-----TRPGSNAEYQLVDERIVGHKPKSLSFAEAAA-LP 126 (336)
T ss_pred ccccceEEEEEEcCCCCCCCCCCCEEEEcCC---------C-----CCCccceEEEEEchHHeeeCCCCCCHHHhhh-hh
Confidence 5799999999999999988889998764200 0 012233332222 22222221111 12
Q ss_pred ch--HHHHHHHHHHhhCCCCCCC-----CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee
Q 010322 225 VS--VSSAAVELALMKLPESSHA-----TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII 296 (513)
Q Consensus 225 ~S--va~~Av~la~~~~~~~~l~-----g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~ 296 (513)
.+ .++.++. ... .... |.+|+|+|+ |.+|.+++..+...|..+|+++.++.++. .++.++|.. ..
T Consensus 127 ~~~~ta~~~l~---~~~--~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~-~~~~~~g~~-~~ 199 (336)
T cd08252 127 LTSLTAWEALF---DRL--GISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESI-AWVKELGAD-HV 199 (336)
T ss_pred hHHHHHHHHHH---Hhc--CCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhH-HHHHhcCCc-EE
Confidence 22 2233321 111 1223 889999995 99999999999999933588888888777 445667642 12
Q ss_pred ecccchH----Hhh-cCCCcEEEEcCCCCc
Q 010322 297 YKPLSEM----LSC-AADADVVFTSTASEA 321 (513)
Q Consensus 297 ~~~~~~~----~~~-l~~aDVVI~AT~s~~ 321 (513)
+...++. ... -.+.|++++|++.+.
T Consensus 200 ~~~~~~~~~~i~~~~~~~~d~vl~~~~~~~ 229 (336)
T cd08252 200 INHHQDLAEQLEALGIEPVDYIFCLTDTDQ 229 (336)
T ss_pred EeCCccHHHHHHhhCCCCCCEEEEccCcHH
Confidence 2111111 111 146899999988643
|
This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil |
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0026 Score=69.89 Aligned_cols=76 Identities=20% Similarity=0.286 Sum_probs=52.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH----------hCCcc--------eeecccchHHhh
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEE----------LNGVE--------IIYKPLSEMLSC 306 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~----------~g~~~--------~~~~~~~~~~~~ 306 (513)
.-++|.|||+|.||..++..+...|.. |+++|++++.++...+. -|... ..+....++. .
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~-V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~-~ 81 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQ-VLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLH-A 81 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHH-H
Confidence 346799999999999999999999985 99999999877542111 11100 0011223443 3
Q ss_pred cCCCcEEEEcCCCCcc
Q 010322 307 AADADVVFTSTASEAP 322 (513)
Q Consensus 307 l~~aDVVI~AT~s~~~ 322 (513)
+.++|+||+|.+....
T Consensus 82 l~~aDlVIEav~E~~~ 97 (503)
T TIGR02279 82 LADAGLVIEAIVENLE 97 (503)
T ss_pred hCCCCEEEEcCcCcHH
Confidence 5699999999887544
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.014 Score=57.50 Aligned_cols=97 Identities=18% Similarity=0.247 Sum_probs=65.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeC----------CHHHHHHHHHHhCCcc----eeecccchHHhhc
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNR----------SEERVAAICEELNGVE----IIYKPLSEMLSCA 307 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR----------s~~ra~~la~~~g~~~----~~~~~~~~~~~~l 307 (513)
.++.+++|+|.|.|.+|+.+++.|...|++-|.|++. +.+...++.++.+... ....+.+++..
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~-- 104 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLE-- 104 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCcccee--
Confidence 4689999999999999999999999999975558887 6676666655554210 01122222222
Q ss_pred CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccC
Q 010322 308 ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISV 350 (513)
Q Consensus 308 ~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlav 350 (513)
..+||+|.|+.. .+++.+.+..+ +-.+++.-+.
T Consensus 105 ~~~Dvlip~a~~--~~i~~~~~~~l--------~a~~I~egAN 137 (227)
T cd01076 105 LDCDILIPAALE--NQITADNADRI--------KAKIIVEAAN 137 (227)
T ss_pred ecccEEEecCcc--CccCHHHHhhc--------eeeEEEeCCC
Confidence 379999999944 45666666543 2367777663
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0032 Score=64.74 Aligned_cols=94 Identities=21% Similarity=0.355 Sum_probs=62.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhc-CCCcEEEEcCCCCc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCA-ADADVVFTSTASEA 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l-~~aDVVI~AT~s~~ 321 (513)
+..+.+|+|||+|.||..++..|...|. +|++++++.. .+.+..+|. . ...+..+.+ ..+|+||.||+...
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~--~~~a~~~gv---~--~~~~~~e~~~~~aDvVilavp~~~ 104 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY--SDIAAELGV---S--FFRDPDDFCEEHPDVVLLCTSILS 104 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH--HHHHHHcCC---e--eeCCHHHHhhCCCCEEEEecCHHH
Confidence 3467899999999999999999999886 5999999864 245555553 1 234444444 46999999998653
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
. .+.+..+.... .....+++|++
T Consensus 105 ~---~~vl~~l~~~~--l~~~~iviDv~ 127 (304)
T PLN02256 105 T---EAVLRSLPLQR--LKRSTLFVDVL 127 (304)
T ss_pred H---HHHHHhhhhhc--cCCCCEEEecC
Confidence 2 23333321000 01235788885
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0041 Score=65.77 Aligned_cols=75 Identities=11% Similarity=0.220 Sum_probs=48.4
Q ss_pred HHHHhHhcCcccchhhHHHHHHHhhCccccccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEc-ccHHHHHHHHH
Q 010322 186 VVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIG-AGKMGKLVIKH 264 (513)
Q Consensus 186 A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIG-aG~mG~~ia~~ 264 (513)
..+.+.+.+.-...+..+|+..+....+.....+. .. .....++|+||| +|.||..++..
T Consensus 57 ~~~~~~~~~l~~~~~~~i~~~i~~~s~~~q~~~~~---------------~~----~~~~~~~I~IiGG~GlmG~slA~~ 117 (374)
T PRK11199 57 RRAEAEALGVPPDLIEDVLRRVMRESYSSENDKGF---------------KT----LNPDLRPVVIVGGKGQLGRLFAKM 117 (374)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHhHHhcc---------------cc----cCcccceEEEEcCCChhhHHHHHH
Confidence 34455555555556677777666544332211110 00 012357899999 89999999999
Q ss_pred HHHcCCCeEEEEeCCH
Q 010322 265 LVAKGCTKMVVVNRSE 280 (513)
Q Consensus 265 L~~~G~~~V~v~nRs~ 280 (513)
|...|.. |++++|+.
T Consensus 118 l~~~G~~-V~~~d~~~ 132 (374)
T PRK11199 118 LTLSGYQ-VRILEQDD 132 (374)
T ss_pred HHHCCCe-EEEeCCCc
Confidence 9999974 99999863
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0036 Score=63.50 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=51.2
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcce-----e--ecccchHHhhcCCCcEEEEcCCCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEI-----I--YKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~-----~--~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
+|+|||+|.||..++..|...|. +|++++|+.++.+.+.+. +. .+ . ....++..+ +..+|+||.||++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~-~~~~d~vila~k~~ 77 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNEN-GL-RLEDGEITVPVLAADDPAE-LGPQDLVILAVKAY 77 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHc-CC-cccCCceeecccCCCChhH-cCCCCEEEEecccc
Confidence 69999999999999999999887 599999988777665543 21 11 0 011233333 37899999999976
Q ss_pred c
Q 010322 321 A 321 (513)
Q Consensus 321 ~ 321 (513)
.
T Consensus 78 ~ 78 (304)
T PRK06522 78 Q 78 (304)
T ss_pred c
Confidence 4
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0055 Score=62.55 Aligned_cols=91 Identities=20% Similarity=0.267 Sum_probs=67.2
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhh
Q 010322 228 SSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSC 306 (513)
Q Consensus 228 a~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~ 306 (513)
+.+.+++.+.. + -++.|++|+|||- .-+|+-++..|...|++ |++++..- .++.+.
T Consensus 151 p~avi~lL~~~-~-i~l~Gk~vvVIGRS~iVGkPla~lL~~~~AT-Vtvchs~T--------------------~nl~~~ 207 (299)
T PLN02516 151 PKGCLELLSRS-G-IPIKGKKAVVVGRSNIVGLPVSLLLLKADAT-VTVVHSRT--------------------PDPESI 207 (299)
T ss_pred HHHHHHHHHHh-C-CCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEeCCCC--------------------CCHHHH
Confidence 33445665542 2 4789999999999 66899999999999985 88886431 124455
Q ss_pred cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 307 AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 307 l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
++.|||||+|+|.+ .+++.++++. | .++||.++-+
T Consensus 208 ~~~ADIvv~AvGk~-~~i~~~~vk~---------g-avVIDvGin~ 242 (299)
T PLN02516 208 VREADIVIAAAGQA-MMIKGDWIKP---------G-AAVIDVGTNA 242 (299)
T ss_pred HhhCCEEEEcCCCc-CccCHHHcCC---------C-CEEEEeeccc
Confidence 67899999999997 4567888753 3 6899998644
|
|
| >cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0053 Score=62.40 Aligned_cols=159 Identities=14% Similarity=0.183 Sum_probs=89.7
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH---H-HHHHHhHhcCcccchhhHHHHHHHhhCcc----ccccccc----
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV---K-QVVKVGQGVVGFGRNISGLFKHAISVGKR----VRTETNI---- 220 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv---k-~A~~~a~~~~~~g~~L~~lf~~ai~v~k~----Vr~et~i---- 220 (513)
..||++++.+..+++++....+|+..+.... + .-+..|......|...++.|+.++.++.. ++.....
T Consensus 60 ~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~ 139 (336)
T cd08276 60 IPLSDGAGEVVAVGEGVTRFKVGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAA 139 (336)
T ss_pred ccccceeEEEEEeCCCCcCCCCCCEEEEecccccccccccccccccccccccCceeeeEEEecHHHeEECCCCCCHHHhh
Confidence 4799999999999998887888987765321 0 01111111112232224444444444331 1111110
Q ss_pred c-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecc
Q 010322 221 A-AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKP 299 (513)
Q Consensus 221 ~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~ 299 (513)
. .-+...+++++.. .. ....|.+|+|.|+|.+|.+++..+...|++ |+++.++.++.+.+. .++.. ..+..
T Consensus 140 ~~~~~~~~a~~~l~~----~~-~~~~g~~vli~g~g~~g~~~~~~a~~~G~~-v~~~~~~~~~~~~~~-~~g~~-~~~~~ 211 (336)
T cd08276 140 TLPCAGLTAWNALFG----LG-PLKPGDTVLVQGTGGVSLFALQFAKAAGAR-VIATSSSDEKLERAK-ALGAD-HVINY 211 (336)
T ss_pred hhhHHHHHHHHHHHh----hc-CCCCCCEEEEECCcHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHH-HcCCC-EEEcC
Confidence 0 0111222333211 11 234688999999999999999999999986 888899888875544 46532 12211
Q ss_pred cc--h----HHhhc--CCCcEEEEcCCC
Q 010322 300 LS--E----MLSCA--ADADVVFTSTAS 319 (513)
Q Consensus 300 ~~--~----~~~~l--~~aDVVI~AT~s 319 (513)
.. + +.... .++|++|++++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 239 (336)
T cd08276 212 RTTPDWGEEVLKLTGGRGVDHVVEVGGP 239 (336)
T ss_pred CcccCHHHHHHHHcCCCCCcEEEECCCh
Confidence 11 1 22222 369999999874
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0055 Score=62.41 Aligned_cols=91 Identities=16% Similarity=0.307 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhh
Q 010322 228 SSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSC 306 (513)
Q Consensus 228 a~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~ 306 (513)
+.+.+++.+.. + .++.|++|+|||. .-+|+-++..|...|++ |+++...- .++.+.
T Consensus 144 p~avi~lL~~~-~-i~l~Gk~vvViGrS~iVGkPla~lL~~~~aT-Vt~chs~T--------------------~~l~~~ 200 (294)
T PRK14187 144 PKGCLYLIKTI-T-RNLSGSDAVVIGRSNIVGKPMACLLLGENCT-VTTVHSAT--------------------RDLADY 200 (294)
T ss_pred HHHHHHHHHHh-C-CCCCCCEEEEECCCccchHHHHHHHhhCCCE-EEEeCCCC--------------------CCHHHH
Confidence 33445665442 2 4789999999999 77899999999999985 88877531 123445
Q ss_pred cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 307 AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 307 l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
+..|||||+|+|.|.. ++.++++. | .++||.++-+
T Consensus 201 ~~~ADIvVsAvGkp~~-i~~~~ik~---------g-aiVIDVGin~ 235 (294)
T PRK14187 201 CSKADILVAAVGIPNF-VKYSWIKK---------G-AIVIDVGINS 235 (294)
T ss_pred HhhCCEEEEccCCcCc-cCHHHcCC---------C-CEEEEecccc
Confidence 6789999999999976 57777743 2 7899998643
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0022 Score=60.58 Aligned_cols=73 Identities=23% Similarity=0.353 Sum_probs=53.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
++|.|||| |.+|..+++.+..+|.. |+.+-|++.+...+ +........+...+.+.+.+.+.|+||+|-+.+.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHe-VTAivRn~~K~~~~-~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~ 74 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHE-VTAIVRNASKLAAR-QGVTILQKDIFDLTSLASDLAGHDAVISAFGAGA 74 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCe-eEEEEeChHhcccc-ccceeecccccChhhhHhhhcCCceEEEeccCCC
Confidence 47999999 99999999999999985 99999999887443 1111111123333455577899999999987763
|
|
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0072 Score=60.54 Aligned_cols=150 Identities=16% Similarity=0.232 Sum_probs=88.1
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccc-cCCCchHHHHH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNI-AAGAVSVSSAA 231 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i-~~~~~Sva~~A 231 (513)
..|+++++.+..++++++..-+|+..+.-. ..+..+.++.---...+.++..+...... ...+..+++.+
T Consensus 60 ~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~---------~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~ 130 (323)
T cd08241 60 VPGSEVAGVVEAVGEGVTGFKVGDRVVALT---------GQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHA 130 (323)
T ss_pred cccceeEEEEEEeCCCCCCCCCCCEEEEec---------CCceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHH
Confidence 469999999999999888888888776421 01222222211112233444333222111 11223333443
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc-h----HHh
Q 010322 232 VELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS-E----MLS 305 (513)
Q Consensus 232 v~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~-~----~~~ 305 (513)
+... . ....+.+|+|.|+ |.+|.+++..+...|+. |+++.++.++.+ ++..++.. ..+.... + +..
T Consensus 131 ~~~~---~--~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~-v~~~~~~~~~~~-~~~~~g~~-~~~~~~~~~~~~~i~~ 202 (323)
T cd08241 131 LVRR---A--RLQPGETVLVLGAAGGVGLAAVQLAKALGAR-VIAAASSEEKLA-LARALGAD-HVIDYRDPDLRERVKA 202 (323)
T ss_pred HHHh---c--CCCCCCEEEEEcCCchHHHHHHHHHHHhCCE-EEEEeCCHHHHH-HHHHcCCc-eeeecCCccHHHHHHH
Confidence 3211 1 2346899999998 99999999999999986 888888888774 44556531 1111111 1 122
Q ss_pred hc--CCCcEEEEcCCC
Q 010322 306 CA--ADADVVFTSTAS 319 (513)
Q Consensus 306 ~l--~~aDVVI~AT~s 319 (513)
.. .++|++++|++.
T Consensus 203 ~~~~~~~d~v~~~~g~ 218 (323)
T cd08241 203 LTGGRGVDVVYDPVGG 218 (323)
T ss_pred HcCCCCcEEEEECccH
Confidence 22 368999999886
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0033 Score=60.54 Aligned_cols=78 Identities=24% Similarity=0.322 Sum_probs=53.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-------------------HHHHHHHHHhCCc--ceeeccc--
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-------------------ERVAAICEELNGV--EIIYKPL-- 300 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-------------------~ra~~la~~~g~~--~~~~~~~-- 300 (513)
+.+.+|+|+|+|++|..+++.|...|+.+|+++|... .|++.+++.+... .+.+.+.
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~ 98 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTD 98 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEec
Confidence 4678999999999999999999999999999997541 1344444433211 1122111
Q ss_pred ---chHHhhcCCCcEEEEcCCCCc
Q 010322 301 ---SEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 301 ---~~~~~~l~~aDVVI~AT~s~~ 321 (513)
+...+.+.++|+||.|+....
T Consensus 99 ~~~~~~~~~~~~~dvVi~~~~~~~ 122 (197)
T cd01492 99 DISEKPEEFFSQFDVVVATELSRA 122 (197)
T ss_pred CccccHHHHHhCCCEEEECCCCHH
Confidence 223455789999999987643
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0049 Score=62.04 Aligned_cols=152 Identities=15% Similarity=0.155 Sum_probs=86.1
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccc-cCCCchHHHHH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNI-AAGAVSVSSAA 231 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i-~~~~~Sva~~A 231 (513)
..|+|+++.+.++++++....+|+..+...-. ...+....+...--...+.+++.+..+... ...+...++++
T Consensus 61 ~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~------~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~ 134 (319)
T cd08267 61 IPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPP------KGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQA 134 (319)
T ss_pred cccceeeEEEEEeCCCCCCCCCCCEEEEeccC------CCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHH
Confidence 47999999999999999999999987643210 001111111100001122233322221111 11233444554
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc-hH-Hhh--
Q 010322 232 VELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS-EM-LSC-- 306 (513)
Q Consensus 232 v~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~-~~-~~~-- 306 (513)
+.... ....|.+|+|.|+ |.+|.+++..+...|++ |+++.++ ++. +++++++.. ..+.... +. ...
T Consensus 135 ~~~~~-----~~~~g~~vli~g~~g~~g~~~~~la~~~g~~-v~~~~~~-~~~-~~~~~~g~~-~~~~~~~~~~~~~~~~ 205 (319)
T cd08267 135 LRDAG-----KVKPGQRVLINGASGGVGTFAVQIAKALGAH-VTGVCST-RNA-ELVRSLGAD-EVIDYTTEDFVALTAG 205 (319)
T ss_pred HHHhc-----CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCE-EEEEeCH-HHH-HHHHHcCCC-EeecCCCCCcchhccC
Confidence 43221 1246899999998 99999999999999995 7777765 555 555777631 1111111 11 111
Q ss_pred cCCCcEEEEcCCC
Q 010322 307 AADADVVFTSTAS 319 (513)
Q Consensus 307 l~~aDVVI~AT~s 319 (513)
-.++|+||+|++.
T Consensus 206 ~~~~d~vi~~~~~ 218 (319)
T cd08267 206 GEKYDVIFDAVGN 218 (319)
T ss_pred CCCCcEEEECCCc
Confidence 1368999999985
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.011 Score=72.05 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=57.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
..++|.|||.|.||..++..|...|. +|+++||++++.+.+... |. . ..++..+.+..+|+||.|.+.+..
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~-Ga---~--~~~s~~e~~~~aDvVi~~V~~~~~ 393 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNF-SVCGYDVYKPTLVRFENA-GG---L--AGNSPAEVAKDVDVLVIMVANEVQ 393 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc-CC---e--ecCCHHHHHhcCCEEEEecCChHH
Confidence 45789999999999999999999998 599999999998777654 32 1 124555667889999999997654
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0028 Score=61.87 Aligned_cols=75 Identities=19% Similarity=0.318 Sum_probs=53.4
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC-cceeec-----ccchHHhh-------cCC
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG-VEIIYK-----PLSEMLSC-------AAD 309 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~-~~~~~~-----~~~~~~~~-------l~~ 309 (513)
+.+++++|+|+ |.+|..+++.|...|++ |++++|++++...+...+.. ..+.+. ..+++... ...
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGS 81 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 57889999998 99999999999999986 99999999887666655431 011111 11222222 246
Q ss_pred CcEEEEcCCC
Q 010322 310 ADVVFTSTAS 319 (513)
Q Consensus 310 aDVVI~AT~s 319 (513)
.|+||.+.+.
T Consensus 82 ~d~vi~~ag~ 91 (251)
T PRK07231 82 VDILVNNAGT 91 (251)
T ss_pred CCEEEECCCC
Confidence 7999999875
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0039 Score=63.12 Aligned_cols=70 Identities=13% Similarity=0.246 Sum_probs=50.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC---CeEEEEeCCH-HHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGC---TKMVVVNRSE-ERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~---~~V~v~nRs~-~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+|.|||+|.||..++..|...|. .+|.+++|+. ++...+...++. .. ...+..+.+.++|+||.|++..
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~--~~--~~~~~~e~~~~aDvVilavpp~ 75 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPT--VE--LADNEAEIFTKCDHSFICVPPL 75 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCC--eE--EeCCHHHHHhhCCEEEEecCHH
Confidence 469999999999999999998872 4689999864 455555555432 12 1234445567899999999954
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0047 Score=63.92 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=53.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC------cceeecccchHHhhcCCCcEEEEcCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG------VEIIYKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~------~~~~~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
...+|.|||+|.||..++..+...|..+|.++|++.++++..+..+.. ....+....+.. .+.+||+||.+.+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVitag 82 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITAG 82 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECCC
Confidence 567999999999999999999888866799999988665433322211 011222224544 6799999999987
Q ss_pred CCc
Q 010322 319 SEA 321 (513)
Q Consensus 319 s~~ 321 (513)
.+.
T Consensus 83 ~~~ 85 (319)
T PTZ00117 83 VQR 85 (319)
T ss_pred CCC
Confidence 653
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0064 Score=58.58 Aligned_cols=36 Identities=33% Similarity=0.629 Sum_probs=32.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
+.+.+|+|+|+|++|..+++.|...|+.+|+++|.+
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 467899999999999999999999999999998754
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PLN03129 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0056 Score=67.35 Aligned_cols=118 Identities=19% Similarity=0.325 Sum_probs=81.4
Q ss_pred CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHH-----cCC------CeEEEEeCC----HHH---H
Q 010322 222 AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVA-----KGC------TKMVVVNRS----EER---V 283 (513)
Q Consensus 222 ~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~-----~G~------~~V~v~nRs----~~r---a 283 (513)
+++.+|+.+++--|.+..+ ..+.+.+|+++|||..|..++..|.. .|. ++|+++|+. .+| .
T Consensus 298 QGTaaV~lAgll~A~r~~g-~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l 376 (581)
T PLN03129 298 QGTAAVALAGLLAALRATG-GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSL 376 (581)
T ss_pred chHHHHHHHHHHHHHHHhC-CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccC
Confidence 3556666666544444333 57889999999999999999998887 477 589988873 111 1
Q ss_pred ----HHHHHHhCCcceeecccchHHhhcCC--CcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 284 ----AAICEELNGVEIIYKPLSEMLSCAAD--ADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 284 ----~~la~~~g~~~~~~~~~~~~~~~l~~--aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
..+++. ..+..++.++++. +||+|-+++.+ .+|+++.++.+.. ...+.+++-+|.|-
T Consensus 377 ~~~k~~fa~~-------~~~~~~L~e~v~~vkptvLIG~S~~~-g~Ft~evi~~Ma~----~~~rPIIFaLSNPt 439 (581)
T PLN03129 377 QPFKKPFAHD-------HEPGASLLEAVKAIKPTVLIGLSGVG-GTFTKEVLEAMAS----LNERPIIFALSNPT 439 (581)
T ss_pred hHHHHHHHhh-------cccCCCHHHHHhccCCCEEEEecCCC-CCCCHHHHHHHHh----cCCCCEEEECCCCC
Confidence 233332 1133567788877 89999998866 4688998887642 13457888899884
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0044 Score=62.71 Aligned_cols=71 Identities=23% Similarity=0.336 Sum_probs=49.4
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH-----------HHHHhCCcce--------eecccchHHhhc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAA-----------ICEELNGVEI--------IYKPLSEMLSCA 307 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~-----------la~~~g~~~~--------~~~~~~~~~~~l 307 (513)
++|.|||+|.||..++..+...|. +|+++++++++++. +.+. +.... .+....+.. .+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~-g~~~~~~~~~~~~~l~~~~~~~-~~ 80 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKK-GKMTEADKEAALARITGTTDLD-DL 80 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHhCeEEeCCHH-Hh
Confidence 579999999999999999999998 59999999987742 1111 11000 111122333 36
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
.++|+||.|++..
T Consensus 81 ~~aDlVi~av~e~ 93 (282)
T PRK05808 81 KDADLVIEAATEN 93 (282)
T ss_pred ccCCeeeeccccc
Confidence 8899999998754
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0038 Score=60.67 Aligned_cols=68 Identities=19% Similarity=0.370 Sum_probs=53.8
Q ss_pred eEEEEcccHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAK--GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~--G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
+|.+||+|.||..++..+..- +++-+.+++|+.+++..+.+.++.. ...++.+.+.+.|+|++|.+..
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~-----~~s~ide~~~~~DlvVEaAS~~ 71 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRR-----CVSDIDELIAEVDLVVEAASPE 71 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCC-----ccccHHHHhhccceeeeeCCHH
Confidence 689999999999999988753 5778999999999999888877642 1145556667888888886653
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0047 Score=60.94 Aligned_cols=36 Identities=25% Similarity=0.499 Sum_probs=33.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
+.+.+|+|+|+|++|..++..|...|+.+++++|.+
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 467899999999999999999999999999999853
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.007 Score=61.47 Aligned_cols=91 Identities=15% Similarity=0.306 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhh
Q 010322 228 SSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSC 306 (513)
Q Consensus 228 a~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~ 306 (513)
+.+.+++.+.. + .++.|++|+|||- .-+|+-++..|...|++ |++++..- .++.+.
T Consensus 143 p~av~~lL~~y-~-i~l~GK~vvViGrS~iVGkPla~lL~~~~AT-Vtichs~T--------------------~~L~~~ 199 (288)
T PRK14171 143 ALGCLAVIKKY-E-PNLTGKNVVIIGRSNIVGKPLSALLLKENCS-VTICHSKT--------------------HNLSSI 199 (288)
T ss_pred HHHHHHHHHHh-C-CCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCCCC--------------------CCHHHH
Confidence 33445665542 2 4789999999999 67899999999999985 88877421 123445
Q ss_pred cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 307 AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 307 l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
+..|||||+|+|.|. +++.++++. | .++||.++-+
T Consensus 200 ~~~ADIvV~AvGkp~-~i~~~~vk~---------G-avVIDvGin~ 234 (288)
T PRK14171 200 TSKADIVVAAIGSPL-KLTAEYFNP---------E-SIVIDVGINR 234 (288)
T ss_pred HhhCCEEEEccCCCC-ccCHHHcCC---------C-CEEEEeeccc
Confidence 678999999999986 467777743 3 6899998643
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0071 Score=61.75 Aligned_cols=92 Identities=17% Similarity=0.290 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHh
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLS 305 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~ 305 (513)
++.+.+++.+. ++ -++.|++|+|||- .-+|+-++..|...|++ |+++.... .++.+
T Consensus 141 Tp~aii~lL~~-~~-i~l~Gk~vvVIGrS~iVGkPla~lL~~~~at-Vtv~hs~T--------------------~~l~~ 197 (297)
T PRK14186 141 TPAGVMRLLRS-QQ-IDIAGKKAVVVGRSILVGKPLALMLLAANAT-VTIAHSRT--------------------QDLAS 197 (297)
T ss_pred CHHHHHHHHHH-hC-CCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEeCCCC--------------------CCHHH
Confidence 44555666654 22 4789999999999 67899999999999985 88875421 12344
Q ss_pred hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 306 CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
.++.||+||+|+|.|.. ++.++++. | .++||.++-+
T Consensus 198 ~~~~ADIvIsAvGkp~~-i~~~~ik~---------g-avVIDvGin~ 233 (297)
T PRK14186 198 ITREADILVAAAGRPNL-IGAEMVKP---------G-AVVVDVGIHR 233 (297)
T ss_pred HHhhCCEEEEccCCcCc-cCHHHcCC---------C-CEEEEecccc
Confidence 56789999999999865 67777743 3 6899998654
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0043 Score=63.04 Aligned_cols=77 Identities=17% Similarity=0.362 Sum_probs=55.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceee-----cccchHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIY-----KPLSEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~-----~~~~~~~~~-------l 307 (513)
.+.+++++|.|+ |++|+.+++.|...|+ +|++++|+.++++++.+++.. ....+ .+.+++.+. .
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 115 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRI 115 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 467899999998 9999999999999998 599999999888777665421 01111 111222222 3
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|+||++.|..
T Consensus 116 g~id~li~~AG~~ 128 (293)
T PRK05866 116 GGVDILINNAGRS 128 (293)
T ss_pred CCCCEEEECCCCC
Confidence 4789999998764
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0043 Score=64.13 Aligned_cols=73 Identities=14% Similarity=0.223 Sum_probs=52.4
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh------CCcce--eecccchHHhhc-CCCcEEEEcCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL------NGVEI--IYKPLSEMLSCA-ADADVVFTSTA 318 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~------g~~~~--~~~~~~~~~~~l-~~aDVVI~AT~ 318 (513)
+|.|||+|.||.+++..|...|. +|++++|+.+..+.+.+.. .+... .+....+..+.+ ..+|+||-|++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 69999999999999999999986 5999999988877776531 11000 011123444444 58999999999
Q ss_pred CCc
Q 010322 319 SEA 321 (513)
Q Consensus 319 s~~ 321 (513)
+..
T Consensus 81 s~~ 83 (326)
T PRK14620 81 TQQ 83 (326)
T ss_pred HHH
Confidence 864
|
|
| >PRK13529 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.012 Score=64.72 Aligned_cols=123 Identities=17% Similarity=0.302 Sum_probs=81.3
Q ss_pred CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHH----cCC------CeEEEEeCC----HH------
Q 010322 222 AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVA----KGC------TKMVVVNRS----EE------ 281 (513)
Q Consensus 222 ~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~----~G~------~~V~v~nRs----~~------ 281 (513)
+++.+|..+++--|-+..+ ..+.+.+++++|||..|..++..|.. .|. ++|+++|+. .+
T Consensus 272 QGTaaV~LAgll~A~r~~g-~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~ 350 (563)
T PRK13529 272 QGTGAVTLAGLLAALKITG-EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLD 350 (563)
T ss_pred chHHHHHHHHHHHHHHHhC-CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchH
Confidence 3555666666544444433 56889999999999999999998886 688 589998874 11
Q ss_pred HHHHHHHHhCCccee-e---cccchHHhhcCCC--cEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 282 RVAAICEELNGVEII-Y---KPLSEMLSCAADA--DVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 282 ra~~la~~~g~~~~~-~---~~~~~~~~~l~~a--DVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
....+++.... .. + ....++.++++.+ |++|-+++.+ .+|+++.++.+.+. ..+.+++-||.|-
T Consensus 351 ~k~~fa~~~~~--~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~-g~Ft~evv~~Ma~~----~erPIIFaLSNPt 420 (563)
T PRK13529 351 FQKPYARKREE--LADWDTEGDVISLLEVVRNVKPTVLIGVSGQP-GAFTEEIVKEMAAH----CERPIIFPLSNPT 420 (563)
T ss_pred HHHHHhhhccc--ccccccccCCCCHHHHHhccCCCEEEEecCCC-CCCCHHHHHHHHhc----CCCCEEEECCCcC
Confidence 11233432110 00 0 0113677888877 9999988765 46788888876532 2457888888885
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0057 Score=65.05 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=54.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-------------------HHHHHHHHHhC----Ccceeecc-
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-------------------ERVAAICEELN----GVEIIYKP- 299 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-------------------~ra~~la~~~g----~~~~~~~~- 299 (513)
+...+|+|+|+|++|..++++|...|+.+++++|.+. .|++..++.+. ...+...+
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~ 115 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET 115 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence 4678999999999999999999999999999988641 13434444332 11122111
Q ss_pred ---cchHHhhcCCCcEEEEcCCCCc
Q 010322 300 ---LSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 300 ---~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.++..+.+.++|+||+||....
T Consensus 116 ~~~~~~~~~~~~~~D~Vvd~~d~~~ 140 (390)
T PRK07411 116 RLSSENALDILAPYDVVVDGTDNFP 140 (390)
T ss_pred ccCHHhHHHHHhCCCEEEECCCCHH
Confidence 1233456789999999998754
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0071 Score=59.62 Aligned_cols=77 Identities=19% Similarity=0.265 Sum_probs=54.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee--ecccchHHhh-------cCCCcE
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII--YKPLSEMLSC-------AADADV 312 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~--~~~~~~~~~~-------l~~aDV 312 (513)
.+.|++|+|+|+ |.+|..+++.|...|++ |++++|+..+.+.+.+.++..... +...+++... ....|+
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 82 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGAT-VVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDI 82 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence 467899999999 99999999999999985 999999988776666655421111 1111222222 246799
Q ss_pred EEEcCCCC
Q 010322 313 VFTSTASE 320 (513)
Q Consensus 313 VI~AT~s~ 320 (513)
||.+.+..
T Consensus 83 vi~~ag~~ 90 (255)
T PRK06057 83 AFNNAGIS 90 (255)
T ss_pred EEECCCcC
Confidence 99988753
|
|
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.014 Score=58.38 Aligned_cols=156 Identities=16% Similarity=0.193 Sum_probs=88.1
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCcccccccccc-CCCchHHHHH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIA-AGAVSVSSAA 231 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~-~~~~Sva~~A 231 (513)
..|||+++.+..+++++...-+|+........ + ....|....++..-....+.++..+..+.... ..+...++.+
T Consensus 60 ~~g~e~~G~v~~~g~~~~~~~~Gd~v~~~~~~--~--~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~ 135 (325)
T cd08253 60 VPGSDGAGVVEAVGEGVDGLKVGDRVWLTNLG--W--GRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRA 135 (325)
T ss_pred ecccceEEEEEeeCCCCCCCCCCCEEEEeccc--c--CCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHH
Confidence 47999999999999999888889877653200 0 00011111111111112222332222111111 1122333333
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc--c---hHHh
Q 010322 232 VELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL--S---EMLS 305 (513)
Q Consensus 232 v~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~--~---~~~~ 305 (513)
+... . .-..|++|+|.|+ |.+|..+++.+...|++ |+++.++.++.+.+ ..++.. ..+... + .+.+
T Consensus 136 l~~~---~--~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~-v~~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~~~ 207 (325)
T cd08253 136 LFHR---A--GAKAGETVLVHGGSGAVGHAAVQLARWAGAR-VIATASSAEGAELV-RQAGAD-AVFNYRAEDLADRILA 207 (325)
T ss_pred HHHH---h--CCCCCCEEEEEcCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHH-HHcCCC-EEEeCCCcCHHHHHHH
Confidence 3221 1 2346899999996 99999999999999985 89999998887544 556532 111111 1 1222
Q ss_pred hc--CCCcEEEEcCCCC
Q 010322 306 CA--ADADVVFTSTASE 320 (513)
Q Consensus 306 ~l--~~aDVVI~AT~s~ 320 (513)
.. .+.|+||+|++..
T Consensus 208 ~~~~~~~d~vi~~~~~~ 224 (325)
T cd08253 208 ATAGQGVDVIIEVLANV 224 (325)
T ss_pred HcCCCceEEEEECCchH
Confidence 22 3689999998774
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0086 Score=59.28 Aligned_cols=166 Identities=16% Similarity=0.142 Sum_probs=98.9
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCcc--ccccccccCCCchHH-
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKR--VRTETNIAAGAVSVS- 228 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~--Vr~et~i~~~~~Sva- 228 (513)
...|.||++.+..|+.|+....+|+....-.--.+| ++...+|.. ..-.. ..++-++
T Consensus 66 ytpGmEaaGvVvAvG~gvtdrkvGDrVayl~~~g~y-----------------aee~~vP~~kv~~vpe---~i~~k~aa 125 (336)
T KOG1197|consen 66 YTPGMEAAGVVVAVGEGVTDRKVGDRVAYLNPFGAY-----------------AEEVTVPSVKVFKVPE---AITLKEAA 125 (336)
T ss_pred cCCCcccceEEEEecCCccccccccEEEEeccchhh-----------------heeccccceeeccCCc---ccCHHHHH
Confidence 357999999999999999999999976642211222 222222210 00000 0111111
Q ss_pred ------HHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc
Q 010322 229 ------SAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS 301 (513)
Q Consensus 229 ------~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~ 301 (513)
..|.-+..+.+ .-.+|.+|+|--| |++|.+.+++|+..|+. ++.+.-|.++. +.+.+.|.........+
T Consensus 126 a~llq~lTAy~ll~e~y--~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~-tI~~asTaeK~-~~akenG~~h~I~y~~e 201 (336)
T KOG1197|consen 126 ALLLQGLTAYMLLFEAY--NVKPGHTVLVHAAAGGVGLLLCQLLRAVGAH-TIATASTAEKH-EIAKENGAEHPIDYSTE 201 (336)
T ss_pred HHHHHHHHHHHHHHHhc--CCCCCCEEEEEeccccHHHHHHHHHHhcCcE-EEEEeccHHHH-HHHHhcCCcceeeccch
Confidence 22223333333 3457999999876 99999999999999986 44455566776 66777775321112234
Q ss_pred hHHhh------cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 302 EMLSC------AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 302 ~~~~~------l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
|..+. -++.|++.+..|-...-.. +..+. +.|.++-++.+
T Consensus 202 D~v~~V~kiTngKGVd~vyDsvG~dt~~~s---l~~Lk-----~~G~mVSfG~a 247 (336)
T KOG1197|consen 202 DYVDEVKKITNGKGVDAVYDSVGKDTFAKS---LAALK-----PMGKMVSFGNA 247 (336)
T ss_pred hHHHHHHhccCCCCceeeeccccchhhHHH---HHHhc-----cCceEEEeccc
Confidence 43322 2489999999988765322 33322 34667767664
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0053 Score=62.92 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=52.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC------cceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG------VEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~------~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
++|.|||+|.||..++..+...|..+|.++|+++++++..+..+.. ....+....+. +.+.+||+||.|.+.|
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~p 81 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGVP 81 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCCC
Confidence 5899999999999999999988743799999988766544432211 01122222344 4578999999998765
Q ss_pred c
Q 010322 321 A 321 (513)
Q Consensus 321 ~ 321 (513)
.
T Consensus 82 ~ 82 (307)
T PRK06223 82 R 82 (307)
T ss_pred C
Confidence 4
|
|
| >cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.011 Score=60.03 Aligned_cols=150 Identities=18% Similarity=0.182 Sum_probs=86.7
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCcccccccccc-CCCchHHHHH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIA-AGAVSVSSAA 231 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~-~~~~Sva~~A 231 (513)
..|+++.+.+..+++++...-+|+....-.. .|....+...--.....++..+..+.... ..+...++.+
T Consensus 60 ~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~---------~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~ 130 (331)
T cd08273 60 TPGYDLVGRVDALGSGVTGFEVGDRVAALTR---------VGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQM 130 (331)
T ss_pred ccccceEEEEEEeCCCCccCCCCCEEEEeCC---------CcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHH
Confidence 4699999999999999988888987765210 11111111100012223333332222111 1233344444
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-chHH--hh-
Q 010322 232 VELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL-SEML--SC- 306 (513)
Q Consensus 232 v~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~-~~~~--~~- 306 (513)
+... . ....|.+|+|.|+ |.+|.+++..++..|++ |+++.+ ..+. .++..+|.. .+... .+.. ..
T Consensus 131 l~~~---~--~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~-v~~~~~-~~~~-~~~~~~g~~--~~~~~~~~~~~~~~~ 200 (331)
T cd08273 131 LHRA---A--KVLTGQRVLIHGASGGVGQALLELALLAGAE-VYGTAS-ERNH-AALRELGAT--PIDYRTKDWLPAMLT 200 (331)
T ss_pred HHHh---c--CCCCCCEEEEECCCcHHHHHHHHHHHHcCCE-EEEEeC-HHHH-HHHHHcCCe--EEcCCCcchhhhhcc
Confidence 3221 1 2347899999997 99999999999999985 777766 6665 555667631 12111 1111 11
Q ss_pred cCCCcEEEEcCCCCc
Q 010322 307 AADADVVFTSTASEA 321 (513)
Q Consensus 307 l~~aDVVI~AT~s~~ 321 (513)
-.++|++++|+++..
T Consensus 201 ~~~~d~vl~~~~~~~ 215 (331)
T cd08273 201 PGGVDVVFDGVGGES 215 (331)
T ss_pred CCCceEEEECCchHH
Confidence 136899999998764
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0075 Score=61.23 Aligned_cols=77 Identities=27% Similarity=0.397 Sum_probs=57.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-ceee--ccc---chHHh-------hcC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-EIIY--KPL---SEMLS-------CAA 308 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~--~~~---~~~~~-------~l~ 308 (513)
++.|++++|.|+ |++|+.+++.|...|+ +|++++|+.+++++++++++.. .+.. .+. +++.+ ...
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 578999999998 9999999999999998 5999999999988888877521 1111 111 22222 235
Q ss_pred CCcEEEEcCCCC
Q 010322 309 DADVVFTSTASE 320 (513)
Q Consensus 309 ~aDVVI~AT~s~ 320 (513)
..|+||++.|..
T Consensus 85 ~id~vI~nAG~~ 96 (296)
T PRK05872 85 GIDVVVANAGIA 96 (296)
T ss_pred CCCEEEECCCcC
Confidence 689999998763
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.011 Score=58.79 Aligned_cols=76 Identities=14% Similarity=0.092 Sum_probs=54.8
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc---chH-------HhhcCCCcE
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL---SEM-------LSCAADADV 312 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~---~~~-------~~~l~~aDV 312 (513)
+.+++++|.|+ |++|+.+++.|...|+. |++++|+++++..+...++.......+. +++ .+.....|+
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 81 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGAR-VAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDV 81 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 56889999999 99999999999999985 9999999998877776654211111112 222 122356899
Q ss_pred EEEcCCCC
Q 010322 313 VFTSTASE 320 (513)
Q Consensus 313 VI~AT~s~ 320 (513)
+|++.+..
T Consensus 82 li~~ag~~ 89 (273)
T PRK07825 82 LVNNAGVM 89 (273)
T ss_pred EEECCCcC
Confidence 99998754
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0076 Score=62.46 Aligned_cols=91 Identities=19% Similarity=0.210 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhh
Q 010322 228 SSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSC 306 (513)
Q Consensus 228 a~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~ 306 (513)
+.+.+++.+.. + .++.|++|+|||- .-+|+-++..|...|+. |+++...- .++.+.
T Consensus 198 p~avi~LL~~~-~-i~l~GK~vvVIGRS~iVGkPla~LL~~~~AT-VTicHs~T--------------------~nl~~~ 254 (345)
T PLN02897 198 PKGCVELLIRS-G-VEIAGKNAVVIGRSNIVGLPMSLLLQRHDAT-VSTVHAFT--------------------KDPEQI 254 (345)
T ss_pred HHHHHHHHHHh-C-CCCCCCEEEEECCCccccHHHHHHHHHCCCE-EEEEcCCC--------------------CCHHHH
Confidence 34445665442 2 4789999999999 66899999999999985 88776421 123445
Q ss_pred cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 307 AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 307 l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
++.|||||+|+|.|.. ++.++++. | .++||+++-+
T Consensus 255 ~~~ADIvIsAvGkp~~-v~~d~vk~---------G-avVIDVGin~ 289 (345)
T PLN02897 255 TRKADIVIAAAGIPNL-VRGSWLKP---------G-AVVIDVGTTP 289 (345)
T ss_pred HhhCCEEEEccCCcCc-cCHHHcCC---------C-CEEEEccccc
Confidence 6789999999999976 67788753 3 6899998644
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0087 Score=60.63 Aligned_cols=92 Identities=16% Similarity=0.291 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHh
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLS 305 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~ 305 (513)
++.+.+++.+.. + -++.|++|+|||- .-+|+-++..|...|+. |+++...- .++.+
T Consensus 140 Tp~avi~ll~~~-~-i~l~Gk~vvViGrS~iVGkPla~lL~~~~At-Vtichs~T--------------------~nl~~ 196 (282)
T PRK14182 140 TPAGVMRMLDEA-R-VDPKGKRALVVGRSNIVGKPMAMMLLERHAT-VTIAHSRT--------------------ADLAG 196 (282)
T ss_pred CHHHHHHHHHHh-C-CCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCCCC--------------------CCHHH
Confidence 344555665542 2 4689999999999 67899999999999984 88876431 12345
Q ss_pred hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 306 CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
.++.||+||+|+|.+.. ++.++++. | .++||.++-+
T Consensus 197 ~~~~ADIvI~AvGk~~~-i~~~~ik~---------g-aiVIDvGin~ 232 (282)
T PRK14182 197 EVGRADILVAAIGKAEL-VKGAWVKE---------G-AVVIDVGMNR 232 (282)
T ss_pred HHhhCCEEEEecCCcCc-cCHHHcCC---------C-CEEEEeecee
Confidence 56789999999998764 67777743 2 7899998644
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0055 Score=68.20 Aligned_cols=56 Identities=23% Similarity=0.471 Sum_probs=43.0
Q ss_pred CCchHHHHHHHHHHhhC-----CC---CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeC
Q 010322 223 GAVSVSSAAVELALMKL-----PE---SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNR 278 (513)
Q Consensus 223 ~~~Sva~~Av~la~~~~-----~~---~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR 278 (513)
.|..++-.||++--+.+ ++ ..+.+.+|+|+|+|+.|..++++|...|+++|+++|.
T Consensus 307 dP~~la~~avdlnlkLmkWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~ 370 (664)
T TIGR01381 307 DPKRLAERSVDLNLKLMKWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDN 370 (664)
T ss_pred CHHHHHHHHHHHHHHHHhhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence 56777777776532221 11 2246889999999999999999999999999999875
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0084 Score=60.89 Aligned_cols=92 Identities=12% Similarity=0.261 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHc----CCCeEEEEeCCHHHHHHHHHHhCCcceeecccc
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAK----GCTKMVVVNRSEERVAAICEELNGVEIIYKPLS 301 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~----G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~ 301 (513)
++.+.+++.+. .+ -++.|++|+|||- .-+|+-++..|... ++ .|++++... .
T Consensus 136 Tp~avi~lL~~-~~-i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~A-tVtvchs~T--------------------~ 192 (287)
T PRK14181 136 TPAGIIELLKY-YE-IPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNA-TVTLLHSQS--------------------E 192 (287)
T ss_pred CHHHHHHHHHH-hC-CCCCCCEEEEECCCccchHHHHHHHHhCcCCCCC-EEEEeCCCC--------------------C
Confidence 34444566553 22 4789999999999 66899999999988 55 488776421 1
Q ss_pred hHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 302 EMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 302 ~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
++.+.+..||+||+|+|.|.. ++.++++. | .++||.++-+
T Consensus 193 ~l~~~~~~ADIvV~AvG~p~~-i~~~~ik~---------G-avVIDvGin~ 232 (287)
T PRK14181 193 NLTEILKTADIIIAAIGVPLF-IKEEMIAE---------K-AVIVDVGTSR 232 (287)
T ss_pred CHHHHHhhCCEEEEccCCcCc-cCHHHcCC---------C-CEEEEecccc
Confidence 344556789999999999965 67788743 3 7899998644
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0082 Score=59.22 Aligned_cols=76 Identities=18% Similarity=0.320 Sum_probs=57.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC-c--ce--eecccch-------HHhhcCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG-V--EI--IYKPLSE-------MLSCAAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~-~--~~--~~~~~~~-------~~~~l~~ 309 (513)
.+.++.++|-|| +++|.++++.|...|++ |.++.|+.+|+++++.+++. . .. .+.+.++ +.+....
T Consensus 3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~~-vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~ 81 (246)
T COG4221 3 TLKGKVALITGASSGIGEATARALAEAGAK-VVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGR 81 (246)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHHCCCe-EEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCc
Confidence 356788999999 99999999999999995 99999999999999999982 1 11 1111212 2233457
Q ss_pred CcEEEEcCCC
Q 010322 310 ADVVFTSTAS 319 (513)
Q Consensus 310 aDVVI~AT~s 319 (513)
.|++|+-.|.
T Consensus 82 iDiLvNNAGl 91 (246)
T COG4221 82 IDILVNNAGL 91 (246)
T ss_pred ccEEEecCCC
Confidence 8988886554
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0089 Score=62.31 Aligned_cols=91 Identities=16% Similarity=0.246 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhh
Q 010322 228 SSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSC 306 (513)
Q Consensus 228 a~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~ 306 (513)
+...+++.+. .+ .++.|++|+|||- .-+|+-++..|...|+. |+++...- .++.+.
T Consensus 215 p~avielL~~-y~-i~l~GK~vvVIGRS~iVGkPLa~LL~~~~AT-VTicHs~T--------------------~nl~~~ 271 (364)
T PLN02616 215 PKGCIELLHR-YN-VEIKGKRAVVIGRSNIVGMPAALLLQREDAT-VSIVHSRT--------------------KNPEEI 271 (364)
T ss_pred HHHHHHHHHH-hC-CCCCCCEEEEECCCccccHHHHHHHHHCCCe-EEEeCCCC--------------------CCHHHH
Confidence 3344566553 22 4789999999999 77899999999999985 88876421 234455
Q ss_pred cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 307 AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 307 l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
++.|||||.|+|.|.. ++.++++. | .++||+++-+
T Consensus 272 ~r~ADIVIsAvGkp~~-i~~d~vK~---------G-AvVIDVGIn~ 306 (364)
T PLN02616 272 TREADIIISAVGQPNM-VRGSWIKP---------G-AVVIDVGINP 306 (364)
T ss_pred HhhCCEEEEcCCCcCc-CCHHHcCC---------C-CEEEeccccc
Confidence 6789999999999976 67777743 3 7899998644
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0052 Score=70.56 Aligned_cols=70 Identities=23% Similarity=0.364 Sum_probs=54.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
++|+|||+|.||..+++.|...|. .+|++++|++++.+. +.++|.. .....+..+.+.++|+||.|++..
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~-a~~~g~~---~~~~~~~~~~~~~aDvVilavp~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLEL-AVSLGVI---DRGEEDLAEAVSGADVIVLAVPVL 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHH-HHHCCCC---CcccCCHHHHhcCCCEEEECCCHH
Confidence 679999999999999999999884 469999999888744 4455421 112345556678999999999864
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0052 Score=65.33 Aligned_cols=71 Identities=18% Similarity=0.269 Sum_probs=50.7
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC------------cceeecccchHHhhcCCCcEEEE
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG------------VEIIYKPLSEMLSCAADADVVFT 315 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~------------~~~~~~~~~~~~~~l~~aDVVI~ 315 (513)
+|.|||+|-||..++..+. .|. +|+++|+++++.+.+.+.... ....+....+..+.+.++|+||.
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~-~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNH-EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCC-cEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 6999999999999997665 586 599999999998777652110 00112122234455689999999
Q ss_pred cCCCC
Q 010322 316 STASE 320 (513)
Q Consensus 316 AT~s~ 320 (513)
|++.+
T Consensus 80 ~Vpt~ 84 (388)
T PRK15057 80 ATPTD 84 (388)
T ss_pred eCCCC
Confidence 99987
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0044 Score=65.96 Aligned_cols=78 Identities=23% Similarity=0.298 Sum_probs=53.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-------------------HHHHHHHHHhC----Ccceeecc-
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-------------------ERVAAICEELN----GVEIIYKP- 299 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-------------------~ra~~la~~~g----~~~~~~~~- 299 (513)
+.+.+|+|||+|++|..++.+|...|+.+|+++|.+. .|++..++.+. ...+...+
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 119 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF 119 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence 4678999999999999999999999999999988631 13433333321 11121111
Q ss_pred ---cchHHhhcCCCcEEEEcCCCCc
Q 010322 300 ---LSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 300 ---~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.++..+.+.++|+||+||....
T Consensus 120 ~i~~~~~~~~~~~~D~Vvd~~d~~~ 144 (392)
T PRK07878 120 RLDPSNAVELFSQYDLILDGTDNFA 144 (392)
T ss_pred cCChhHHHHHHhcCCEEEECCCCHH
Confidence 1234456789999999987753
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0068 Score=66.08 Aligned_cols=74 Identities=24% Similarity=0.273 Sum_probs=53.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+.+++|+|+|+|..|+++++.|...|+ .|+++|++.....++...+|. .+.......+.+.++|+||-+.+.+
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~~~~l~~~gi---~~~~~~~~~~~~~~~d~vV~Spgi~ 85 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDNETARHKLIEVTGV---ADISTAEASDQLDSFSLVVTSPGWR 85 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCChHHHHHHHHhcCc---EEEeCCCchhHhcCCCEEEeCCCCC
Confidence 3578899999999999999999999999 699999987655444444442 2322212223356789999877664
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.009 Score=60.99 Aligned_cols=91 Identities=16% Similarity=0.308 Sum_probs=66.2
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHc----CCCeEEEEeCCHHHHHHHHHHhCCcceeecccch
Q 010322 228 SSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAK----GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSE 302 (513)
Q Consensus 228 a~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~----G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~ 302 (513)
+.+.+++.+. .+ .++.|++|+|||. .-+|+-++..|... ++ .|+++...- .+
T Consensus 145 p~avi~lL~~-~~-i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~a-tVtv~hs~T--------------------~~ 201 (297)
T PRK14168 145 PAGIQEMLVR-SG-VETSGAEVVVVGRSNIVGKPIANMMTQKGPGANA-TVTIVHTRS--------------------KN 201 (297)
T ss_pred HHHHHHHHHH-hC-CCCCCCEEEEECCCCcccHHHHHHHHhcccCCCC-EEEEecCCC--------------------cC
Confidence 4444566543 22 4789999999999 77899999999887 45 488875421 13
Q ss_pred HHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 303 MLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 303 ~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
+.+.++.||+||+|+|-|.. ++.++++. | .++||.++.+
T Consensus 202 l~~~~~~ADIvVsAvGkp~~-i~~~~ik~---------g-avVIDvGin~ 240 (297)
T PRK14168 202 LARHCQRADILIVAAGVPNL-VKPEWIKP---------G-ATVIDVGVNR 240 (297)
T ss_pred HHHHHhhCCEEEEecCCcCc-cCHHHcCC---------C-CEEEecCCCc
Confidence 44556789999999999875 57777743 3 6899998654
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0054 Score=62.30 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=49.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHH-HHHHHhCCcceeecccch-HHhhcCCCcEEEEcCCCCcc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVA-AICEELNGVEIIYKPLSE-MLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~-~la~~~g~~~~~~~~~~~-~~~~l~~aDVVI~AT~s~~~ 322 (513)
..+|+|+|.|.||.++++.|+..|.. +.+++++..... +.+.++|.. .....+ ....+.++|+||-|+|....
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~-v~i~g~d~~~~~~~~a~~lgv~---d~~~~~~~~~~~~~aD~VivavPi~~~ 77 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLV-VRIIGRDRSAATLKAALELGVI---DELTVAGLAEAAAEADLVIVAVPIEAT 77 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCe-EEEEeecCcHHHHHHHhhcCcc---cccccchhhhhcccCCEEEEeccHHHH
Confidence 46899999999999999999999985 656666554432 333345431 111122 24556789999999988643
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0082 Score=61.31 Aligned_cols=31 Identities=29% Similarity=0.581 Sum_probs=29.0
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNR 278 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR 278 (513)
+|+|+|+|++|..++++|...|+.+|+++|.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~ 31 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDS 31 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 5899999999999999999999999998774
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.014 Score=57.20 Aligned_cols=95 Identities=19% Similarity=0.270 Sum_probs=63.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH----------HHHHHHHHHhCCcc-e---eecccchHHhhc
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE----------ERVAAICEELNGVE-I---IYKPLSEMLSCA 307 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~----------~ra~~la~~~g~~~-~---~~~~~~~~~~~l 307 (513)
.++.|++|+|.|.|.+|+.+++.|...|.+.|.++|.+. +.. +...+.+... . ...+.+++..
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~-- 95 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELI-NYAVALGGSARVKVQDYFPGEAILG-- 95 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHH-HHHHhhCCccccCcccccCccccee--
Confidence 578999999999999999999999999998899999886 555 3333333211 0 0111122222
Q ss_pred CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 308 ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 308 ~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
.++||+|-|+... +++.+....+ +-.+++.-+
T Consensus 96 ~~~DVlipaA~~~--~i~~~~a~~l--------~a~~V~e~A 127 (217)
T cd05211 96 LDVDIFAPCALGN--VIDLENAKKL--------KAKVVAEGA 127 (217)
T ss_pred ccccEEeeccccC--ccChhhHhhc--------CccEEEeCC
Confidence 3899999998865 5566655443 235666655
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0073 Score=58.51 Aligned_cols=76 Identities=16% Similarity=0.290 Sum_probs=53.6
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC-cceee-----cccchHHhh-------cCC
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG-VEIIY-----KPLSEMLSC-------AAD 309 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~-~~~~~-----~~~~~~~~~-------l~~ 309 (513)
+.+++++|+|+ |.+|..+++.|...|++ |++++|++++...+.+.+.. ..+.+ ...+++.+. ...
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGG 82 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46789999998 99999999999999985 99999999887777666531 01111 111222222 247
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
+|+||.+.+..
T Consensus 83 ~d~vi~~ag~~ 93 (237)
T PRK07326 83 LDVLIANAGVG 93 (237)
T ss_pred CCEEEECCCCC
Confidence 89999997654
|
|
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.012 Score=59.88 Aligned_cols=146 Identities=14% Similarity=0.084 Sum_probs=82.4
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHH-HHHHhhCcccc--ccccc--cCCCchH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLF-KHAISVGKRVR--TETNI--AAGAVSV 227 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf-~~ai~v~k~Vr--~et~i--~~~~~Sv 227 (513)
..|+|+++.+..++.+ .+.+|+....- +....+..--- ...+.++..+. ..... ...+..+
T Consensus 67 ~~g~e~~G~V~~~G~~--~~~~Gd~V~~~------------~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~t 132 (329)
T cd05288 67 PMRGGGVGEVVESRSP--DFKVGDLVSGF------------LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLT 132 (329)
T ss_pred cccCceEEEEEecCCC--CCCCCCEEecc------------cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHH
Confidence 4688999999888754 67788877642 01111111000 12233333321 01111 1122333
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc--hH-
Q 010322 228 SSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS--EM- 303 (513)
Q Consensus 228 a~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~--~~- 303 (513)
++.++... . ....+.+|+|.|+ |.+|.++++.++..|+ +|+++.++.++...+.+.++.. .+.... +.
T Consensus 133 a~~~l~~~---~--~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~ 204 (329)
T cd05288 133 AYFGLTEI---G--KPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWLVEELGFD--AAINYKTPDLA 204 (329)
T ss_pred HHHHHHhc---c--CCCCCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhhcCCc--eEEecCChhHH
Confidence 44433211 1 1236899999995 9999999999999998 4888889888874443336632 111111 11
Q ss_pred ---Hhhc-CCCcEEEEcCCCC
Q 010322 304 ---LSCA-ADADVVFTSTASE 320 (513)
Q Consensus 304 ---~~~l-~~aDVVI~AT~s~ 320 (513)
.... .+.|++|+|++..
T Consensus 205 ~~v~~~~~~~~d~vi~~~g~~ 225 (329)
T cd05288 205 EALKEAAPDGIDVYFDNVGGE 225 (329)
T ss_pred HHHHHhccCCceEEEEcchHH
Confidence 1111 4699999999864
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.01 Score=58.41 Aligned_cols=77 Identities=19% Similarity=0.311 Sum_probs=55.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceee--ccc---chHHh-------hcCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIY--KPL---SEMLS-------CAAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~--~~~---~~~~~-------~l~~ 309 (513)
.+++++++|+|+ |.+|+.+++.|...|+. |++++|+.+..+.+.+.++...+.+ .++ +++.. .+.+
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 86 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGG 86 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 578999999999 99999999999999985 9999999887777766553211111 111 12222 2347
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|+||.+.+..
T Consensus 87 ~d~vi~~ag~~ 97 (264)
T PRK12829 87 LDVLVNNAGIA 97 (264)
T ss_pred CCEEEECCCCC
Confidence 89999998764
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0057 Score=69.41 Aligned_cols=95 Identities=18% Similarity=0.336 Sum_probs=61.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC-CCcEEEEcCCCC
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA-DADVVFTSTASE 320 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~-~aDVVI~AT~s~ 320 (513)
.++.+++|+|||+|.||..+++.|...|. +|++++|+... +.+.++|. . ...+..+.+. .+|+||.||+..
T Consensus 365 ~~~~~~kIgIIGlG~mG~slA~~L~~~G~-~V~~~dr~~~~--~~a~~~Gv---~--~~~~~~el~~~~aDvVILavP~~ 436 (667)
T PLN02712 365 NDGSKLKIAIVGFGNFGQFLAKTMVKQGH-TVLAYSRSDYS--DEAQKLGV---S--YFSDADDLCEEHPEVILLCTSIL 436 (667)
T ss_pred CCCCCCEEEEEecCHHHHHHHHHHHHCcC-EEEEEECChHH--HHHHHcCC---e--EeCCHHHHHhcCCCEEEECCChH
Confidence 34577999999999999999999999987 59999998643 33445553 1 1234444443 589999999954
Q ss_pred ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 ~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
. + .+.+..+.... .....+++|++
T Consensus 437 ~-~--~~vi~~l~~~~--lk~g~ivvDv~ 460 (667)
T PLN02712 437 S-T--EKVLKSLPFQR--LKRSTLFVDVL 460 (667)
T ss_pred H-H--HHHHHHHHHhc--CCCCcEEEECC
Confidence 2 2 23333221100 01236888984
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.01 Score=60.49 Aligned_cols=91 Identities=19% Similarity=0.346 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHc----CCCeEEEEeCCHHHHHHHHHHhCCcceeecccch
Q 010322 228 SSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAK----GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSE 302 (513)
Q Consensus 228 a~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~----G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~ 302 (513)
+.+.+++.+.. + .++.|++|+|||. .-+|+-++..|... ++ .|+++...- .+
T Consensus 141 p~av~~lL~~~-~-i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~a-TVtvchs~T--------------------~n 197 (293)
T PRK14185 141 PNGILELLKRY-H-IETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDC-TVTVCHSRS--------------------KN 197 (293)
T ss_pred HHHHHHHHHHh-C-CCCCCCEEEEECCCccchHHHHHHHHcCCCCCCC-EEEEecCCC--------------------CC
Confidence 34445665432 2 4689999999999 67899999999887 45 488875421 12
Q ss_pred HHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 303 MLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 303 ~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
+.+.+..||+||+|+|.|.. ++.++++. | .++||.++-+
T Consensus 198 l~~~~~~ADIvIsAvGkp~~-i~~~~vk~---------g-avVIDvGin~ 236 (293)
T PRK14185 198 LKKECLEADIIIAALGQPEF-VKADMVKE---------G-AVVIDVGTTR 236 (293)
T ss_pred HHHHHhhCCEEEEccCCcCc-cCHHHcCC---------C-CEEEEecCcc
Confidence 34455789999999999986 57777743 2 6899998644
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0088 Score=58.19 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=55.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee--ecccchHHhh---cCCCcEEEEc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII--YKPLSEMLSC---AADADVVFTS 316 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~--~~~~~~~~~~---l~~aDVVI~A 316 (513)
++.+++++|.|+ |.+|..+++.|...|+ +|++++|+.++.+.+.+..+...+. +...+++.+. ....|+||.+
T Consensus 6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ 84 (245)
T PRK07060 6 DFSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNC 84 (245)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEEC
Confidence 357899999998 8999999999999998 5999999998887777665421111 1111222222 2358999999
Q ss_pred CCCC
Q 010322 317 TASE 320 (513)
Q Consensus 317 T~s~ 320 (513)
.+..
T Consensus 85 ag~~ 88 (245)
T PRK07060 85 AGIA 88 (245)
T ss_pred CCCC
Confidence 8764
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0084 Score=65.67 Aligned_cols=73 Identities=25% Similarity=0.266 Sum_probs=54.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
+.|++|+|+|.|..|.++++.|...|+ +|+++|+.+.+... ++++|. .+.......+.+.++|+||.+.|.|.
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~-l~~~g~---~~~~~~~~~~~l~~~D~VV~SpGi~~ 82 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRP-HAERGV---ATVSTSDAVQQIADYALVVTSPGFRP 82 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHH-HHhCCC---EEEcCcchHhHhhcCCEEEECCCCCC
Confidence 478999999999999999999999998 59999988766544 344442 23222223344678999999988863
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0059 Score=60.49 Aligned_cols=75 Identities=15% Similarity=0.296 Sum_probs=53.4
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-c-e--eecccchHHh-------hcCCCc
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-E-I--IYKPLSEMLS-------CAADAD 311 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-~-~--~~~~~~~~~~-------~l~~aD 311 (513)
+.+++++|+|+ |++|..+++.|...|++ |++++|+.++++++....+.. . + .+...++..+ .+...|
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id 81 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGAR-VAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKID 81 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCC
Confidence 56899999998 89999999999999985 999999988887776654321 0 1 1111122222 234679
Q ss_pred EEEEcCCC
Q 010322 312 VVFTSTAS 319 (513)
Q Consensus 312 VVI~AT~s 319 (513)
++|++.+.
T Consensus 82 ~li~~Ag~ 89 (262)
T TIGR03325 82 CLIPNAGI 89 (262)
T ss_pred EEEECCCC
Confidence 99999764
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.014 Score=59.80 Aligned_cols=77 Identities=16% Similarity=0.271 Sum_probs=54.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcce---eecccchHHhh-------cCCCc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEI---IYKPLSEMLSC-------AADAD 311 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~---~~~~~~~~~~~-------l~~aD 311 (513)
++.+++|+|.|+ |.+|..+++.|...|++ |++++|+.++.+++..++..... .+...+++.+. ....|
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~-Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD 101 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAH-VIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRID 101 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCC
Confidence 467899999999 99999999999999985 99999999888776665432111 11112222221 24689
Q ss_pred EEEEcCCCC
Q 010322 312 VVFTSTASE 320 (513)
Q Consensus 312 VVI~AT~s~ 320 (513)
+||++.+..
T Consensus 102 ~li~nAg~~ 110 (315)
T PRK06196 102 ILINNAGVM 110 (315)
T ss_pred EEEECCCCC
Confidence 999998753
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0078 Score=61.96 Aligned_cols=72 Identities=18% Similarity=0.323 Sum_probs=52.5
Q ss_pred eEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCcc-----eeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGVE-----IIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~~-----~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
+|.|||+|.+|..++..|...|. .+|.++|++.+++...+..+.... ..+. ..+ .+.+.++|+||.|.+.+.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~-~~d-~~~l~~aDiViita~~~~ 79 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY-AGD-YADCKGADVVVITAGANQ 79 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe-eCC-HHHhCCCCEEEEccCCCC
Confidence 69999999999999999999984 679999999887754444332110 0111 123 345789999999998863
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.011 Score=60.41 Aligned_cols=91 Identities=18% Similarity=0.346 Sum_probs=64.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHhCCcceeecccch
Q 010322 228 SSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVA----KGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSE 302 (513)
Q Consensus 228 a~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~----~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~ 302 (513)
+.+.+++.+.. + -++.|++|+|||. .-+|+-++..|.. .|+ .|+++..+.. +
T Consensus 143 p~ail~ll~~y-~-i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~a-tVt~~hs~t~--------------------~ 199 (295)
T PRK14174 143 PYGILELLGRY-N-IETKGKHCVVVGRSNIVGKPMANLMLQKLKESNC-TVTICHSATK--------------------D 199 (295)
T ss_pred HHHHHHHHHHh-C-CCCCCCEEEEECCCCcchHHHHHHHHhccccCCC-EEEEEeCCch--------------------h
Confidence 33445665532 2 4689999999999 6678988888876 466 4777775421 2
Q ss_pred HHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 303 MLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 303 ~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
+.+.+..||+||.|+|.+ .+|+.++++. | .++||.++-+
T Consensus 200 l~~~~~~ADIvI~Avg~~-~li~~~~vk~---------G-avVIDVgi~~ 238 (295)
T PRK14174 200 IPSYTRQADILIAAIGKA-RFITADMVKP---------G-AVVIDVGINR 238 (295)
T ss_pred HHHHHHhCCEEEEecCcc-CccCHHHcCC---------C-CEEEEeeccc
Confidence 344467899999999999 5678888732 3 6899998644
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0075 Score=61.36 Aligned_cols=71 Identities=21% Similarity=0.294 Sum_probs=50.4
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc------ceeec--ccchHHhhcCCCcEEEEcCCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV------EIIYK--PLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~------~~~~~--~~~~~~~~l~~aDVVI~AT~s 319 (513)
+|+|||+|.||..++..|...|. +|++++| .++.+.+.+ .+.. ...+. ...+..+....+|+||.|+++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~ 78 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALRE-RGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA 78 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHHh-CCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc
Confidence 69999999999999999999987 4999999 777766654 2210 00000 112334445789999999998
Q ss_pred Cc
Q 010322 320 EA 321 (513)
Q Consensus 320 ~~ 321 (513)
..
T Consensus 79 ~~ 80 (305)
T PRK12921 79 YQ 80 (305)
T ss_pred cC
Confidence 64
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0085 Score=62.23 Aligned_cols=76 Identities=20% Similarity=0.338 Sum_probs=55.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh---CCcceeec--c---cchHHhh-------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL---NGVEIIYK--P---LSEMLSC------- 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~---g~~~~~~~--~---~~~~~~~------- 306 (513)
.+.+++|+|.|+ |++|+.+++.|...|++ |++++|+.++++++.+++ +. .+.+. + .+++.+.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~-Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGAR-LVLAARDEEALQAVAEECRALGA-EVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 467899999999 99999999999999985 999999999887776654 22 11111 1 1222222
Q ss_pred cCCCcEEEEcCCCC
Q 010322 307 AADADVVFTSTASE 320 (513)
Q Consensus 307 l~~aDVVI~AT~s~ 320 (513)
....|++|++.+..
T Consensus 82 ~g~iD~lVnnAG~~ 95 (330)
T PRK06139 82 GGRIDVWVNNVGVG 95 (330)
T ss_pred cCCCCEEEECCCcC
Confidence 25689999998764
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0071 Score=59.53 Aligned_cols=77 Identities=18% Similarity=0.302 Sum_probs=54.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc--ceeec--cc---chHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV--EIIYK--PL---SEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~--~~~~~--~~---~~~~~~-------l 307 (513)
++.+++|+|.|+ |.+|+.+++.|.+.|++ |++++|+.++..++.+.+... .+.+. +. +++.+. .
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAE-VILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 567999999998 99999999999999984 999999988776665554311 11111 11 122222 3
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|+||.+.+..
T Consensus 86 ~~~d~li~~ag~~ 98 (255)
T PRK07523 86 GPIDILVNNAGMQ 98 (255)
T ss_pred CCCCEEEECCCCC
Confidence 4689999998754
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0064 Score=60.37 Aligned_cols=75 Identities=19% Similarity=0.271 Sum_probs=55.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec-----ccchHHhh-------cCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK-----PLSEMLSC-------AAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~-----~~~~~~~~-------l~~ 309 (513)
++.+++++|.|+ |.+|+.+++.|...|+ +|++++|+.++.+++.+.++.. +.+. ..+++.+. ...
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 80 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLGER-ARFIATDITDDAAIERAVATVVARFGR 80 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCe-eEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 467899999998 9999999999999998 5999999988887777776421 1111 11222222 246
Q ss_pred CcEEEEcCCC
Q 010322 310 ADVVFTSTAS 319 (513)
Q Consensus 310 aDVVI~AT~s 319 (513)
.|++|.+.+.
T Consensus 81 id~lv~~ag~ 90 (261)
T PRK08265 81 VDILVNLACT 90 (261)
T ss_pred CCEEEECCCC
Confidence 7999998775
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.01 Score=60.31 Aligned_cols=92 Identities=21% Similarity=0.290 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVA----KGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS 301 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~----~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~ 301 (513)
++.+.+++.+.. + -++.|++|+|||- .-+|+-++..|.. .|++ |+++..+. .
T Consensus 140 Tp~av~~lL~~~-~-i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~At-Vt~~hs~t--------------------~ 196 (286)
T PRK14184 140 TPAGVMTLLERY-G-LSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANAT-VTVCHSRT--------------------P 196 (286)
T ss_pred CHHHHHHHHHHh-C-CCCCCCEEEEECCCccchHHHHHHHhCCcccCCCE-EEEEeCCc--------------------h
Confidence 334445665442 2 4789999999999 6789999999987 6774 77776432 1
Q ss_pred hHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 302 EMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 302 ~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
++.+.+..||+||.|++.|.. ++.++++. | .++||.++-+
T Consensus 197 ~l~~~~~~ADIVI~AvG~p~l-i~~~~vk~---------G-avVIDVGi~~ 236 (286)
T PRK14184 197 DLAEECREADFLFVAIGRPRF-VTADMVKP---------G-AVVVDVGINR 236 (286)
T ss_pred hHHHHHHhCCEEEEecCCCCc-CCHHHcCC---------C-CEEEEeeeec
Confidence 234456789999999999876 67777732 3 6899998644
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.012 Score=60.21 Aligned_cols=92 Identities=17% Similarity=0.279 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHc----CCCeEEEEeCCHHHHHHHHHHhCCcceeecccc
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAK----GCTKMVVVNRSEERVAAICEELNGVEIIYKPLS 301 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~----G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~ 301 (513)
++.+.+++.+. ++ -++.|++|+|||- .-+|+-++..|... ++ .|+++...- .
T Consensus 140 Tp~avi~lL~~-~~-i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~a-TVtvchs~T--------------------~ 196 (297)
T PRK14167 140 TPHGIQKLLAA-AG-VDTEGADVVVVGRSDIVGKPMANLLIQKADGGNA-TVTVCHSRT--------------------D 196 (297)
T ss_pred CHHHHHHHHHH-hC-CCCCCCEEEEECCCcccHHHHHHHHhcCccCCCC-EEEEeCCCC--------------------C
Confidence 44445566543 22 4689999999999 67899999999877 56 488875421 1
Q ss_pred hHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 302 EMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 302 ~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
++.+.+..|||||+|+|-|.. ++.++++. | .++||.++-+
T Consensus 197 ~l~~~~~~ADIvIsAvGkp~~-i~~~~ik~---------g-aiVIDvGin~ 236 (297)
T PRK14167 197 DLAAKTRRADIVVAAAGVPEL-IDGSMLSE---------G-ATVIDVGINR 236 (297)
T ss_pred CHHHHHhhCCEEEEccCCcCc-cCHHHcCC---------C-CEEEEccccc
Confidence 234456789999999999975 57777743 2 7899998644
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.016 Score=56.53 Aligned_cols=76 Identities=16% Similarity=0.272 Sum_probs=54.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec-----ccchH-------HhhcCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK-----PLSEM-------LSCAAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~-----~~~~~-------~~~l~~ 309 (513)
.+.+++++|.|+ |.+|+.+++.|...|+ +|++++|+.++..++.++++.. ..+. ..++. .+....
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELGES-ALVIRADAGDVAAQKALAQALAEAFGR 80 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhCCc-eEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 356899999998 9999999999999998 5999999988777776666531 1111 11111 122346
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|+||.+.+..
T Consensus 81 id~vi~~ag~~ 91 (249)
T PRK06500 81 LDAVFINAGVA 91 (249)
T ss_pred CCEEEECCCCC
Confidence 89999998754
|
|
| >TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.013 Score=59.63 Aligned_cols=168 Identities=17% Similarity=0.161 Sum_probs=92.8
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCc--------cccccccccCC-
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGK--------RVRTETNIAAG- 223 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~Vr~et~i~~~- 223 (513)
..|+|+++.+.. .|.+.+.+|++...... . .|...++.|++++.++. .+..+......
T Consensus 59 ~~g~e~~G~V~~--~~~~~~~~Gd~V~~~~~--------~---~~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~ 125 (323)
T TIGR02823 59 IPGIDAAGTVVS--SEDPRFREGDEVIVTGY--------G---LGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGT 125 (323)
T ss_pred cceeeeEEEEEe--cCCCCCCCCCEEEEccC--------C---CCCCCCccceEEEEEchhheEECCCCCCHHHhhhhhh
Confidence 359999999877 67778889998875321 0 11111333444333333 22222111110
Q ss_pred CchHHHHHHHHHHhhCCCCCCCCC-eEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc
Q 010322 224 AVSVSSAAVELALMKLPESSHATA-RMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS 301 (513)
Q Consensus 224 ~~Sva~~Av~la~~~~~~~~l~g~-~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~ 301 (513)
+...++.++..... . ....|. +|+|.|+ |.+|.++++.++..|++ ++++.++.++. ++++++|.. .+....
T Consensus 126 ~~~ta~~~~~~~~~-~--~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~-vi~~~~~~~~~-~~~~~~g~~--~~~~~~ 198 (323)
T TIGR02823 126 AGFTAALSVMALER-N--GLTPEDGPVLVTGATGGVGSLAVAILSKLGYE-VVASTGKAEEE-DYLKELGAS--EVIDRE 198 (323)
T ss_pred hHHHHHHHHHHhhh-c--CCCCCCceEEEEcCCcHHHHHHHHHHHHcCCe-EEEEeCCHHHH-HHHHhcCCc--EEEccc
Confidence 11112222221111 1 123577 9999998 99999999999999986 66666777776 555777642 122222
Q ss_pred h----HHhhc-CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 302 E----MLSCA-ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 302 ~----~~~~l-~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+ ..... .++|++++|++.. .+ .+.+..+. ++|..+.++.
T Consensus 199 ~~~~~~~~~~~~~~d~vld~~g~~-~~--~~~~~~l~-----~~G~~v~~g~ 242 (323)
T TIGR02823 199 DLSPPGKPLEKERWAGAVDTVGGH-TL--ANVLAQLK-----YGGAVAACGL 242 (323)
T ss_pred cHHHHHHHhcCCCceEEEECccHH-HH--HHHHHHhC-----CCCEEEEEcc
Confidence 1 11111 2589999999864 22 34454443 3565655553
|
This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc. |
| >cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.026 Score=56.13 Aligned_cols=154 Identities=14% Similarity=0.135 Sum_probs=84.0
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccccC-CCchHHHH
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAA-GAVSVSSA 230 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~~-~~~Sva~~ 230 (513)
...|+|+++.+..++++++..-+|+.......- ...+....+...-....+.++..+........ -+...++.
T Consensus 61 ~~~g~e~~G~v~~~G~~~~~~~~G~~V~~~~~~------~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~ 134 (309)
T cd05289 61 LIPGHDVAGVVVAVGPGVTGFKVGDEVFGMTPF------TRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQ 134 (309)
T ss_pred CccccceeEEEEeeCCCCCCCCCCCEEEEccCC------CCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHH
Confidence 357999999999999999888889876532100 00011111111101122223322211111110 01122233
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc-hHH--hh
Q 010322 231 AVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS-EML--SC 306 (513)
Q Consensus 231 Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~-~~~--~~ 306 (513)
++... . ....+.+|+|.|+ |.+|.+++..+...|+. |+++.++. +. .++..++.. ..+.... +.. ..
T Consensus 135 ~~~~~----~-~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~-v~~~~~~~-~~-~~~~~~g~~-~~~~~~~~~~~~~~~ 205 (309)
T cd05289 135 ALFEL----G-GLKAGQTVLIHGAAGGVGSFAVQLAKARGAR-VIATASAA-NA-DFLRSLGAD-EVIDYTKGDFERAAA 205 (309)
T ss_pred HHHhh----c-CCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEecch-hH-HHHHHcCCC-EEEeCCCCchhhccC
Confidence 32211 1 1346899999997 99999999999999986 77777666 54 555666631 1111111 111 11
Q ss_pred cCCCcEEEEcCCCC
Q 010322 307 AADADVVFTSTASE 320 (513)
Q Consensus 307 l~~aDVVI~AT~s~ 320 (513)
-.++|++|+|++++
T Consensus 206 ~~~~d~v~~~~~~~ 219 (309)
T cd05289 206 PGGVDAVLDTVGGE 219 (309)
T ss_pred CCCceEEEECCchH
Confidence 23689999999886
|
Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et |
| >TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.031 Score=56.08 Aligned_cols=152 Identities=14% Similarity=0.169 Sum_probs=86.9
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccc-cCCCchHHHH
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNI-AAGAVSVSSA 230 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i-~~~~~Sva~~ 230 (513)
...|||+++.+..+++.+..+-+|+.....- ..+....+...--...+.++..+...... ...+...++.
T Consensus 59 ~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~~---------~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~ 129 (325)
T TIGR02824 59 DILGLEVAGEVVAVGEGVSRWKVGDRVCALV---------AGGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWS 129 (325)
T ss_pred CCccceeEEEEEEeCCCCCCCCCCCEEEEcc---------CCCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHH
Confidence 3579999999999999888788898776420 00122221111111222233222111110 0112223333
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-ch----HH
Q 010322 231 AVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL-SE----ML 304 (513)
Q Consensus 231 Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~-~~----~~ 304 (513)
++.. .. ....+.+|+|.|+ |.+|.+++..+...|++ |+++.++.++.+ ++..++.. ..+... .+ +.
T Consensus 130 ~~~~---~~--~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~-v~~~~~~~~~~~-~~~~~g~~-~~~~~~~~~~~~~~~ 201 (325)
T TIGR02824 130 NLFQ---RG--GLKAGETVLIHGGASGIGTTAIQLAKAFGAR-VFTTAGSDEKCA-ACEALGAD-IAINYREEDFVEVVK 201 (325)
T ss_pred HHHH---hc--CCCCCCEEEEEcCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHH-HHHHcCCc-EEEecCchhHHHHHH
Confidence 3211 11 2346899999996 99999999999999985 888999988874 55666531 111111 11 11
Q ss_pred hhc--CCCcEEEEcCCCC
Q 010322 305 SCA--ADADVVFTSTASE 320 (513)
Q Consensus 305 ~~l--~~aDVVI~AT~s~ 320 (513)
... .+.|++|++++..
T Consensus 202 ~~~~~~~~d~~i~~~~~~ 219 (325)
T TIGR02824 202 AETGGKGVDVILDIVGGS 219 (325)
T ss_pred HHcCCCCeEEEEECCchH
Confidence 222 3599999998864
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized. |
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0079 Score=59.28 Aligned_cols=76 Identities=20% Similarity=0.267 Sum_probs=54.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec-----ccchHHh-------hcCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK-----PLSEMLS-------CAAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~-----~~~~~~~-------~l~~ 309 (513)
.+.|++++|.|+ |.+|+.+++.|...|+ +|++++|+..+..++.+.++.. +.+. ..+++.+ ....
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~-~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 84 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKALGEN-AWFIAMDVADEAQVAAGVAEVLGQFGR 84 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHcCCc-eEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 578999999998 9999999999999998 5899999887776766655421 1111 1112211 1235
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|+||.+.+..
T Consensus 85 id~li~~ag~~ 95 (255)
T PRK05717 85 LDALVCNAAIA 95 (255)
T ss_pred CCEEEECCCcc
Confidence 79999998754
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.011 Score=58.52 Aligned_cols=76 Identities=14% Similarity=0.272 Sum_probs=54.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-c-e--eecccchHHhh-------cCCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-E-I--IYKPLSEMLSC-------AADA 310 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-~-~--~~~~~~~~~~~-------l~~a 310 (513)
.+.+++++|.|+ |.+|..+++.|...|++ |++++|+.++++.+.+.++.. . + .+...++.... ....
T Consensus 3 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 81 (263)
T PRK06200 3 WLHGQVALITGGGSGIGRALVERFLAEGAR-VAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKL 81 (263)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 357899999998 89999999999999985 999999998888877766421 0 1 11111222221 3468
Q ss_pred cEEEEcCCC
Q 010322 311 DVVFTSTAS 319 (513)
Q Consensus 311 DVVI~AT~s 319 (513)
|++|++.+.
T Consensus 82 d~li~~ag~ 90 (263)
T PRK06200 82 DCFVGNAGI 90 (263)
T ss_pred CEEEECCCC
Confidence 999999875
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.012 Score=58.56 Aligned_cols=77 Identities=18% Similarity=0.327 Sum_probs=54.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC---Ccceee-----cccchHHhh------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN---GVEIIY-----KPLSEMLSC------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g---~~~~~~-----~~~~~~~~~------l 307 (513)
++.|++++|.|+ |++|+.+++.|...|++ |++++|+.++++++++++. +..+.+ ...+++... .
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGAD-VILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 467999999998 89999999999999985 9999999888777666542 111111 111222222 2
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|++|++.+..
T Consensus 84 g~iD~lv~nag~~ 96 (263)
T PRK08339 84 GEPDIFFFSTGGP 96 (263)
T ss_pred CCCcEEEECCCCC
Confidence 3589999988754
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.009 Score=58.36 Aligned_cols=76 Identities=18% Similarity=0.272 Sum_probs=53.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC-Ccceeec-----ccchHHhh-------cCC
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN-GVEIIYK-----PLSEMLSC-------AAD 309 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g-~~~~~~~-----~~~~~~~~-------l~~ 309 (513)
+.+++++|.|+ |.+|..+++.|...|++ |+++.|+.+......+.+. +..+.+. ..+++.+. ...
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 81 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGAR-VVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGR 81 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCe-EEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 57899999999 99999999999999984 9999999887766555441 1111111 11222222 247
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|+||.+.+..
T Consensus 82 id~vi~~ag~~ 92 (252)
T PRK06138 82 LDVLVNNAGFG 92 (252)
T ss_pred CCEEEECCCCC
Confidence 89999998864
|
|
| >cd08251 polyketide_synthase polyketide synthase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.02 Score=56.94 Aligned_cols=151 Identities=13% Similarity=0.158 Sum_probs=87.4
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCcccccccccc-CCCchHHHHH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIA-AGAVSVSSAA 231 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~-~~~~Sva~~A 231 (513)
..|+|+++.+..+++++..+-+|+..+.-.- ...|....+...--...+.++..+..+.... ..+...++.+
T Consensus 40 ~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~-------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~ 112 (303)
T cd08251 40 TPGFEASGVVRAVGPHVTRLAVGDEVIAGTG-------ESMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDA 112 (303)
T ss_pred CcCceeeEEEEEECCCCCCCCCCCEEEEecC-------CCCcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHH
Confidence 4699999999999999988888998764210 0112222111111122333333332222111 1123334444
Q ss_pred HHHHHhhCCCCCCCCCeEEEEc-ccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc-h----HHh
Q 010322 232 VELALMKLPESSHATARMLVIG-AGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS-E----MLS 305 (513)
Q Consensus 232 v~la~~~~~~~~l~g~~VlVIG-aG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~-~----~~~ 305 (513)
+..+ ....|.+|+|.| +|.+|.++++.++..|++ |+++.++.++.+. +..+|... .+.... + +..
T Consensus 113 l~~~------~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~-v~~~~~~~~~~~~-~~~~g~~~-~~~~~~~~~~~~i~~ 183 (303)
T cd08251 113 FARA------GLAKGEHILIQTATGGTGLMAVQLARLKGAE-IYATASSDDKLEY-LKQLGVPH-VINYVEEDFEEEIMR 183 (303)
T ss_pred HHhc------CCCCCCEEEEecCCcHHHHHHHHHHHHcCCE-EEEEcCCHHHHHH-HHHcCCCE-EEeCCCccHHHHHHH
Confidence 4321 234688999976 599999999999999985 8888888777744 46676421 121111 1 112
Q ss_pred hc--CCCcEEEEcCCC
Q 010322 306 CA--ADADVVFTSTAS 319 (513)
Q Consensus 306 ~l--~~aDVVI~AT~s 319 (513)
.. .++|+++++++.
T Consensus 184 ~~~~~~~d~v~~~~~~ 199 (303)
T cd08251 184 LTGGRGVDVVINTLSG 199 (303)
T ss_pred HcCCCCceEEEECCcH
Confidence 22 369999999864
|
Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a |
| >PTZ00317 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.019 Score=63.02 Aligned_cols=122 Identities=15% Similarity=0.153 Sum_probs=80.9
Q ss_pred CCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHH----cCC------CeEEEEeCC----HHH------
Q 010322 223 GAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVA----KGC------TKMVVVNRS----EER------ 282 (513)
Q Consensus 223 ~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~----~G~------~~V~v~nRs----~~r------ 282 (513)
++.+|+.+++--|-+..+ ..+.+.+|+++|||..|..++..|.. .|. ++|+++|+. .+|
T Consensus 275 GTaaV~lAgll~Alr~~g-~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~ 353 (559)
T PTZ00317 275 GTGAVIAAGFLNALKLSG-VPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAK 353 (559)
T ss_pred hHHHHHHHHHHHHHHHhC-CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccH
Confidence 455666666544444333 56889999999999999999998874 688 789998863 111
Q ss_pred -HHHHHHHhCCcceeecccchHHhhcCCC--cEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 283 -VAAICEELNGVEIIYKPLSEMLSCAADA--DVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 283 -a~~la~~~g~~~~~~~~~~~~~~~l~~a--DVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
...+|+.-.. .......++.++++.+ ||+|-+++.+ ..|+++.++.+.+ ...+.+++-||.|-
T Consensus 354 ~k~~fa~~~~~--~~~~~~~~L~e~v~~~KPtvLIG~S~~~-g~Ft~evv~~Ma~----~~~rPIIFaLSNPt 419 (559)
T PTZ00317 354 HKVPFARTDIS--AEDSSLKTLEDVVRFVKPTALLGLSGVG-GVFTEEVVKTMAS----NVERPIIFPLSNPT 419 (559)
T ss_pred HHHHHhccccc--cccccCCCHHHHHhccCCCEEEEecCCC-CCCCHHHHHHHHh----cCCCCEEEECCCCC
Confidence 1233332100 0000134678888877 9999988766 4678998887653 12457888899885
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.01 Score=60.40 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=52.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-------------------HHHHHHHHHhCCc--ceeecccc-
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-------------------ERVAAICEELNGV--EIIYKPLS- 301 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-------------------~ra~~la~~~g~~--~~~~~~~~- 301 (513)
+...+|+|+|+|++|..++++|...|+++|+++|... .|++..++++... .+.+....
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~ 96 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTG 96 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 4678999999999999999999999999999988642 2443333333211 12222222
Q ss_pred -hHHhhcCCCcEEEEcCCCC
Q 010322 302 -EMLSCAADADVVFTSTASE 320 (513)
Q Consensus 302 -~~~~~l~~aDVVI~AT~s~ 320 (513)
...+.+..+|+||.|+.+.
T Consensus 97 ~~~~~~l~~fdvVV~~~~~~ 116 (286)
T cd01491 97 PLTTDELLKFQVVVLTDASL 116 (286)
T ss_pred cCCHHHHhcCCEEEEecCCH
Confidence 1235578999999997653
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0066 Score=63.92 Aligned_cols=79 Identities=13% Similarity=0.272 Sum_probs=53.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC----------H------------HHHHHHHHHhCCc--ceeecc
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS----------E------------ERVAAICEELNGV--EIIYKP 299 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs----------~------------~ra~~la~~~g~~--~~~~~~ 299 (513)
+.+.+|+|||+|+.|..++..|...|+.+|+++|.. . .|++.+++.+... .+...+
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~~ 253 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPHP 253 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEEe
Confidence 478999999999999999999999999999987753 1 2444444444311 111111
Q ss_pred --c-chHHhhcCCCcEEEEcCCCCcc
Q 010322 300 --L-SEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 300 --~-~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
. .+-...+.++|+||.|+.....
T Consensus 254 ~~I~~~n~~~L~~~DiV~dcvDn~~a 279 (393)
T PRK06153 254 EYIDEDNVDELDGFTFVFVCVDKGSS 279 (393)
T ss_pred ecCCHHHHHHhcCCCEEEEcCCCHHH
Confidence 1 1222357899999999987653
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.01 Score=58.51 Aligned_cols=77 Identities=12% Similarity=0.215 Sum_probs=54.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC----cceeec--cc---chHHhh------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG----VEIIYK--PL---SEMLSC------ 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~----~~~~~~--~~---~~~~~~------ 306 (513)
.+.+++++|.|+ |++|+.+++.|...|++ |++++|+.++.+++++++.. ..+.+. +. +++.+.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~-vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAA-VALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEE 82 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 467899999998 99999999999999985 99999998888777766521 111111 11 122222
Q ss_pred -cCCCcEEEEcCCCC
Q 010322 307 -AADADVVFTSTASE 320 (513)
Q Consensus 307 -l~~aDVVI~AT~s~ 320 (513)
....|++|.+.+..
T Consensus 83 ~~g~id~li~~ag~~ 97 (260)
T PRK07063 83 AFGPLDVLVNNAGIN 97 (260)
T ss_pred HhCCCcEEEECCCcC
Confidence 24689999998753
|
|
| >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.015 Score=58.40 Aligned_cols=177 Identities=14% Similarity=0.115 Sum_probs=95.2
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccc-cCCCchHHHH
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNI-AAGAVSVSSA 230 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i-~~~~~Sva~~ 230 (513)
...|||+++.+..+++++...-+|+....-... .....|..+.+..---...+.+++.+..+... ...+..+++.
T Consensus 59 ~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~----~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~ 134 (328)
T cd08268 59 ARLGYEAAGVVEAVGAGVTGFAVGDRVSVIPAA----DLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYG 134 (328)
T ss_pred CCCCcceEEEEEeeCCCCCcCCCCCEEEecccc----ccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHH
Confidence 357999999999999988777789877642100 00001111111100001122223222111110 1112333344
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-ch----HH
Q 010322 231 AVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL-SE----ML 304 (513)
Q Consensus 231 Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~-~~----~~ 304 (513)
++... . ....+.+|+|.|+ |.+|..++..+...|++ ++++.++.++...+ ..++.. ..+... .+ +.
T Consensus 135 ~~~~~---~--~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~-v~~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~~ 206 (328)
T cd08268 135 ALVEL---A--GLRPGDSVLITAASSSVGLAAIQIANAAGAT-VIATTRTSEKRDAL-LALGAA-HVIVTDEEDLVAEVL 206 (328)
T ss_pred HHHHh---c--CCCCCCEEEEecCccHHHHHHHHHHHHcCCE-EEEEcCCHHHHHHH-HHcCCC-EEEecCCccHHHHHH
Confidence 33211 1 2346889999998 99999999999999985 88888888877554 556531 111111 11 22
Q ss_pred hhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 305 SCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 305 ~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
... .++|++|++++++.. ...+..+. .+|..+.++.
T Consensus 207 ~~~~~~~~d~vi~~~~~~~~---~~~~~~l~-----~~g~~v~~g~ 244 (328)
T cd08268 207 RITGGKGVDVVFDPVGGPQF---AKLADALA-----PGGTLVVYGA 244 (328)
T ss_pred HHhCCCCceEEEECCchHhH---HHHHHhhc-----cCCEEEEEEe
Confidence 222 269999999887421 23344332 3565555553
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.012 Score=56.62 Aligned_cols=77 Identities=12% Similarity=0.174 Sum_probs=51.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee-----ecccchHHhh-------cCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII-----YKPLSEMLSC-------AAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~-----~~~~~~~~~~-------l~~ 309 (513)
.+.+++++|+|+ |.+|+.+++.|...|++ |++++|++.+..+....+...... +...+++... ..+
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGAR-VALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGR 82 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCe-EEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 467899999998 99999999999999985 999999887654444333211111 1112222222 236
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|+||.+.+..
T Consensus 83 ~d~vi~~ag~~ 93 (239)
T PRK12828 83 LDALVNIAGAF 93 (239)
T ss_pred cCEEEECCccc
Confidence 89999987653
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0082 Score=61.58 Aligned_cols=72 Identities=29% Similarity=0.403 Sum_probs=54.0
Q ss_pred EEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCcc-----eeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 249 MLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGVE-----IIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 249 VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~~-----~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
|.|||+|.+|..++..|...|. .+++++|++.+++...+..+.... ..+....+ .+.+.++|+||.|.+.|.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~ 78 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPR 78 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCC
Confidence 5799999999999999998885 579999999988877776654210 11111233 457889999999998864
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.018 Score=56.71 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceee--ccc---chHHh-------hc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIY--KPL---SEMLS-------CA 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~--~~~---~~~~~-------~l 307 (513)
++.+++++|.|+ |++|..+++.|...|++ |++++|+.++.+.+.+++.. ..... .+. +++.+ ..
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQ-VAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 467899999999 99999999999999985 99999999888777766521 11111 111 12222 23
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|++|.+.+..
T Consensus 85 g~id~lv~~ag~~ 97 (253)
T PRK05867 85 GGIDIAVCNAGII 97 (253)
T ss_pred CCCCEEEECCCCC
Confidence 4789999987653
|
|
| >KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0072 Score=61.98 Aligned_cols=78 Identities=23% Similarity=0.337 Sum_probs=53.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-------------------HHHHH---HHHHhCCcceeecc-
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-------------------ERVAA---ICEELNGVEIIYKP- 299 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-------------------~ra~~---la~~~g~~~~~~~~- 299 (513)
++.+..|||||||+.|.-++.||.+.|+.++-++|-+. .|++. +...++. .+.+..
T Consensus 63 ~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs-~v~v~~y 141 (427)
T KOG2017|consen 63 SLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNS-HVEVQTY 141 (427)
T ss_pred ccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCC-Cceeeec
Confidence 46778999999999999999999999998887766421 12222 1222221 123322
Q ss_pred -----cchHHhhcCCCcEEEEcCCCCc
Q 010322 300 -----LSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 300 -----~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.++..+.++++|||.+||-.+.
T Consensus 142 ~~~L~~sNa~~Ii~~YdvVlDCTDN~~ 168 (427)
T KOG2017|consen 142 NEFLSSSNAFDIIKQYDVVLDCTDNVP 168 (427)
T ss_pred hhhccchhHHHHhhccceEEEcCCCcc
Confidence 2345667889999999998764
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.01 Score=63.95 Aligned_cols=74 Identities=22% Similarity=0.430 Sum_probs=53.8
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceee--cccchHHhh-cCCCcEEEEcCCCCc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIY--KPLSEMLSC-AADADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~--~~~~~~~~~-l~~aDVVI~AT~s~~ 321 (513)
++|+|+|+|.+|+.+++.|...|.. |+++++++++.+.+.+..+...+.- .....+.+. +.++|.||.+|+...
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~-v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENND-VTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 3799999999999999999999985 8999999998877665443110111 111234444 678999999998754
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.011 Score=64.34 Aligned_cols=76 Identities=22% Similarity=0.274 Sum_probs=50.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHH-HHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEE-RVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~-ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
++.+++|+|||+|.+|..++..|...|.+ |+++++++. ....+.+.+...++.+..-.... ...++|+||.++|.+
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~-V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-~~~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGAR-VTVVDDGDDERHRALAAILEALGATVRLGPGPT-LPEDTDLVVTSPGWR 89 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-ccCCCCEEEECCCcC
Confidence 46789999999999999999999999985 999986542 22222222211112222111111 235799999999875
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.016 Score=58.44 Aligned_cols=87 Identities=21% Similarity=0.314 Sum_probs=64.5
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcccH-HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCC
Q 010322 232 VELALMKLPESSHATARMLVIGAGK-MGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADA 310 (513)
Q Consensus 232 v~la~~~~~~~~l~g~~VlVIGaG~-mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~a 310 (513)
+.+.+. ++ .++.|++++|||.|. +|+-++..|...+++ |++++..- .++.+..+.|
T Consensus 144 ~~ll~~-~~-i~l~Gk~~vVVGrS~iVGkPla~lL~~~naT-VtvcHs~T--------------------~~l~~~~k~A 200 (283)
T COG0190 144 MTLLEE-YG-IDLRGKNVVVVGRSNIVGKPLALLLLNANAT-VTVCHSRT--------------------KDLASITKNA 200 (283)
T ss_pred HHHHHH-hC-CCCCCCEEEEECCCCcCcHHHHHHHHhCCCE-EEEEcCCC--------------------CCHHHHhhhC
Confidence 455443 33 578999999999955 689999999998985 99887642 1233445789
Q ss_pred cEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 311 DVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 311 DVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
|+||.|+|.|+. ++.+++.. | .++||+++-|
T Consensus 201 DIvv~AvG~p~~-i~~d~vk~---------g-avVIDVGinr 231 (283)
T COG0190 201 DIVVVAVGKPHF-IKADMVKP---------G-AVVIDVGINR 231 (283)
T ss_pred CEEEEecCCccc-cccccccC---------C-CEEEecCCcc
Confidence 999999999976 46666643 3 7899998755
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.01 Score=58.60 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=53.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee-----ecccchHHhh--------cCCCcE
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII-----YKPLSEMLSC--------AADADV 312 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~-----~~~~~~~~~~--------l~~aDV 312 (513)
++++|+|+ |.+|+.+++.|...|+ +|++++|+.++.+++...+++..+. +...+++.+. ....|+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~ 80 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDV 80 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence 67999998 9999999999999998 5999999999888887765421111 1122222222 235699
Q ss_pred EEEcCCCCc
Q 010322 313 VFTSTASEA 321 (513)
Q Consensus 313 VI~AT~s~~ 321 (513)
||.+.+...
T Consensus 81 vi~~ag~~~ 89 (260)
T PRK08267 81 LFNNAGILR 89 (260)
T ss_pred EEECCCCCC
Confidence 999987653
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.01 Score=58.68 Aligned_cols=32 Identities=28% Similarity=0.583 Sum_probs=29.8
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
+|+|+|+|++|..+++.|...|+.+++++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999999999998864
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.01 Score=61.18 Aligned_cols=74 Identities=20% Similarity=0.355 Sum_probs=53.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCcc-----eeecccchHHhhcCCCcEEEEcCCC
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGVE-----IIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~~-----~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
-.+|.|||+|.+|..++..|...|. .++.++|++.+++...+..+.... ..+....+. +.+.++|+||.+.|.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy-~~~~~adivvitaG~ 81 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDY-SVTANSKVVIVTAGA 81 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCH-HHhCCCCEEEECCCC
Confidence 4589999999999999999988876 579999998877765555543210 112212333 347899999998887
Q ss_pred C
Q 010322 320 E 320 (513)
Q Consensus 320 ~ 320 (513)
+
T Consensus 82 ~ 82 (312)
T cd05293 82 R 82 (312)
T ss_pred C
Confidence 5
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.013 Score=57.60 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=54.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeec-----ccchHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK-----PLSEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~-----~~~~~~~~-------l 307 (513)
++.+++++|.|+ |.+|+.+++.|...|+ +|+++.|+.++++.+...+.. ....+. ..+++.+. .
T Consensus 6 ~~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 6 NLEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 467899999998 9999999999999998 599999999887776655411 011111 11222222 2
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|+||.+.+..
T Consensus 85 ~~~d~li~~ag~~ 97 (258)
T PRK06949 85 GTIDILVNNSGVS 97 (258)
T ss_pred CCCCEEEECCCCC
Confidence 3689999998753
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0085 Score=60.07 Aligned_cols=78 Identities=18% Similarity=0.265 Sum_probs=54.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeec-----ccchHHhhc-------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK-----PLSEMLSCA------- 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~-----~~~~~~~~l------- 307 (513)
++.+++++|.|+ |.+|+.+++.|...|+ +|++++|+.++......++.. ..+.+. ..+++.+.+
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 356889999998 9999999999999998 499999998777666555421 111111 122333322
Q ss_pred CCCcEEEEcCCCCc
Q 010322 308 ADADVVFTSTASEA 321 (513)
Q Consensus 308 ~~aDVVI~AT~s~~ 321 (513)
...|+||.+.+...
T Consensus 82 g~id~vi~~Ag~~~ 95 (287)
T PRK06194 82 GAVHLLFNNAGVGA 95 (287)
T ss_pred CCCCEEEECCCCCC
Confidence 35799999987643
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.015 Score=56.57 Aligned_cols=77 Identities=17% Similarity=0.180 Sum_probs=53.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeec--cc---chHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK--PL---SEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~--~~---~~~~~~-------l 307 (513)
.+.+++++|+|+ |.+|+.+++.|...|++ |++++|++++...+.+.+.. ..+.+. +. +++... .
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGAT-VAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 457899999998 99999999999999985 88889998877666555421 111111 11 122221 2
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|+||.+.+..
T Consensus 83 ~~id~vi~~ag~~ 95 (250)
T PRK12939 83 GGLDGLVNNAGIT 95 (250)
T ss_pred CCCCEEEECCCCC
Confidence 5789999998764
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.02 Score=59.42 Aligned_cols=93 Identities=18% Similarity=0.091 Sum_probs=62.4
Q ss_pred EEEEcccHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcce--------e-----ecccchHHhhcCCCcEEE
Q 010322 249 MLVIGAGKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEI--------I-----YKPLSEMLSCAADADVVF 314 (513)
Q Consensus 249 VlVIGaG~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~--------~-----~~~~~~~~~~l~~aDVVI 314 (513)
|.|+|+|.||+.+++.+... +.+-|.|.+.++++...++..++-..+ . +....++.+.+.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 57999999999999998764 455455677777877778876652100 0 001223555667899999
Q ss_pred EcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 315 TSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 315 ~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.||+......+.+.+..+ +.+.+++.-
T Consensus 81 e~Tp~~~~~~na~~~~~~-------GakaVl~~~ 107 (333)
T TIGR01546 81 DATPGGIGAKNKPLYEKA-------GVKAIFQGG 107 (333)
T ss_pred ECCCCCCChhhHHHHHhC-------CcCEEEECC
Confidence 999998877666655443 334667653
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0088 Score=60.58 Aligned_cols=71 Identities=20% Similarity=0.158 Sum_probs=56.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
+.|++|.|||+|..|.+.+..|+..|.. |++-.|......+.|.+-|- .+ .+..++++.+|+|+.-+|...
T Consensus 16 LkgK~iaIIGYGsQG~ahalNLRDSGln-ViiGlr~g~~s~~kA~~dGf---~V---~~v~ea~k~ADvim~L~PDe~ 86 (338)
T COG0059 16 LKGKKVAIIGYGSQGHAQALNLRDSGLN-VIIGLRKGSSSWKKAKEDGF---KV---YTVEEAAKRADVVMILLPDEQ 86 (338)
T ss_pred hcCCeEEEEecChHHHHHHhhhhhcCCc-EEEEecCCchhHHHHHhcCC---Ee---ecHHHHhhcCCEEEEeCchhh
Confidence 5899999999999999999999999996 88888876665566666442 33 345667789999999998753
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.018 Score=56.60 Aligned_cols=77 Identities=18% Similarity=0.304 Sum_probs=54.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeec--cc---chHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK--PL---SEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~--~~---~~~~~~-------l 307 (513)
.+.+++++|.|+ |.+|+.+++.|...|+ +|++++|+.++...+..++.. ...... +. +++.+. .
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDI 84 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 467899999998 9999999999999998 599999998887776665421 111111 11 222221 2
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|+||.+.+..
T Consensus 85 ~~id~vi~~ag~~ 97 (254)
T PRK08085 85 GPIDVLINNAGIQ 97 (254)
T ss_pred CCCCEEEECCCcC
Confidence 4689999988753
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.01 Score=62.02 Aligned_cols=73 Identities=23% Similarity=0.339 Sum_probs=53.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh------C-Ccce--eecccchHHhhcCCCcEEEEc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL------N-GVEI--IYKPLSEMLSCAADADVVFTS 316 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~------g-~~~~--~~~~~~~~~~~l~~aDVVI~A 316 (513)
..+|.|||+|.||.+++..|...| . ++++.|+++..+.+.+.. + +... .+....+..+.+.++|+||.|
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g-~-v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVila 84 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG-P-TLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMG 84 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC-C-EEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEE
Confidence 467999999999999999999988 3 778889988887766531 1 1000 111224555667899999999
Q ss_pred CCCC
Q 010322 317 TASE 320 (513)
Q Consensus 317 T~s~ 320 (513)
+++.
T Consensus 85 vps~ 88 (341)
T PRK12439 85 VPSH 88 (341)
T ss_pred eCHH
Confidence 9974
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.014 Score=53.02 Aligned_cols=71 Identities=30% Similarity=0.392 Sum_probs=47.8
Q ss_pred EEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc----c--eeeccc---chHHhhcCCCcEEEEcCCC
Q 010322 249 MLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV----E--IIYKPL---SEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 249 VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~----~--~~~~~~---~~~~~~l~~aDVVI~AT~s 319 (513)
|+|+|+|.||...+..|...|. +|+++.|+. +++.+.+. |.. . ..+.+. .........+|+||.||.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa 77 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQ-GLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA 77 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHH-CEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhhe-eEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence 6899999999999999999887 499999998 77665443 210 0 001111 1111235689999999988
Q ss_pred Ccc
Q 010322 320 EAP 322 (513)
Q Consensus 320 ~~~ 322 (513)
...
T Consensus 78 ~~~ 80 (151)
T PF02558_consen 78 YQL 80 (151)
T ss_dssp GGH
T ss_pred cch
Confidence 643
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.012 Score=66.81 Aligned_cols=68 Identities=19% Similarity=0.373 Sum_probs=50.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhc-CCCcEEEEcCCCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCA-ADADVVFTSTASE 320 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l-~~aDVVI~AT~s~ 320 (513)
..++|+|||+|.||..+++.|...|. +|++++|+..+ ..+.++|. .. ..+..+.+ ..+|+||.||+..
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~--~~A~~~Gv---~~--~~d~~e~~~~~aDvViLavP~~ 119 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGH-TVLAHSRSDHS--LAARSLGV---SF--FLDPHDLCERHPDVILLCTSII 119 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHH--HHHHHcCC---EE--eCCHHHHhhcCCCEEEEcCCHH
Confidence 34789999999999999999999997 59999998554 34556653 11 23444433 4699999999964
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.012 Score=60.78 Aligned_cols=73 Identities=29% Similarity=0.415 Sum_probs=56.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh------CCc--ceeecccchHHhhcCCCcEEEEcCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL------NGV--EIIYKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~------g~~--~~~~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
.+|.|||+|..|.+++..|...|. +|.+|.|+++-..++-... ++. ...+....|+.+++.++|+|+.++|
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~-~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGH-EVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCC-eeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence 579999999999999999999985 6999999998877766542 111 0112234578888889999999999
Q ss_pred CC
Q 010322 319 SE 320 (513)
Q Consensus 319 s~ 320 (513)
+.
T Consensus 81 s~ 82 (329)
T COG0240 81 SQ 82 (329)
T ss_pred hH
Confidence 84
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0095 Score=61.37 Aligned_cols=71 Identities=21% Similarity=0.411 Sum_probs=52.2
Q ss_pred eEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCc-------ceeecccchHHhhcCCCcEEEEcCCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGV-------EIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~-------~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
+|.|||+|.+|..+|..|...|. .++.++|.+.++++..+..+... ...+. ..+ .+.++++|+||-+.|.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~-~~~-y~~~~~aDivvitaG~ 78 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIR-AGD-YDDCADADIIVITAGP 78 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEE-ECC-HHHhCCCCEEEECCCC
Confidence 58999999999999999988876 57999999877665555544321 11111 122 5668999999999887
Q ss_pred C
Q 010322 320 E 320 (513)
Q Consensus 320 ~ 320 (513)
+
T Consensus 79 ~ 79 (307)
T cd05290 79 S 79 (307)
T ss_pred C
Confidence 5
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0089 Score=59.99 Aligned_cols=73 Identities=23% Similarity=0.348 Sum_probs=53.8
Q ss_pred EEEEcc-cHHHHHHHHHHHHcC--C-CeEEEEeCCHHHHHHHHHHhCCc-----ceeecccchHHhhcCCCcEEEEcCCC
Q 010322 249 MLVIGA-GKMGKLVIKHLVAKG--C-TKMVVVNRSEERVAAICEELNGV-----EIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 249 VlVIGa-G~mG~~ia~~L~~~G--~-~~V~v~nRs~~ra~~la~~~g~~-----~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
|.|||+ |.+|..++..|...| . .+|.++|++.++++..+..+... ...+...+++.+.+.+||+||.+.+.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 579999 999999999998877 3 47999999887776555544211 11222345667788999999999877
Q ss_pred Cc
Q 010322 320 EA 321 (513)
Q Consensus 320 ~~ 321 (513)
+.
T Consensus 81 ~~ 82 (263)
T cd00650 81 GR 82 (263)
T ss_pred CC
Confidence 53
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.014 Score=57.25 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=51.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHH-HHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEE-RVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~-ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
+.+++|||||+|.+|..=+..|...|+. |+|+..... ....++.. +. +.+..-+=-.+.+.++++||.||..+.
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~-VtVVap~i~~el~~l~~~-~~--i~~~~r~~~~~dl~g~~LViaATdD~~ 97 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCY-VYILSKKFSKEFLDLKKY-GN--LKLIKGNYDKEFIKDKHLIVIATDDEK 97 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCCCCHHHHHHHhC-CC--EEEEeCCCChHHhCCCcEEEECCCCHH
Confidence 4688999999999999989999999985 999987642 23344432 22 233221111234679999999998653
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.013 Score=58.45 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=51.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcc--eeecccchHHhhc-------CCCcEEE
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVE--IIYKPLSEMLSCA-------ADADVVF 314 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~--~~~~~~~~~~~~l-------~~aDVVI 314 (513)
.+++++|.|+ |.+|+.+++.|...|+ +|++++|+.++..++... +... ..+...+++...+ .+.|+||
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li 79 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLASL-GVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLV 79 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhC-CCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 4689999998 9999999999999998 499999998887665432 2111 1112222333222 3789999
Q ss_pred EcCCCC
Q 010322 315 TSTASE 320 (513)
Q Consensus 315 ~AT~s~ 320 (513)
++.+..
T Consensus 80 ~~ag~~ 85 (273)
T PRK06182 80 NNAGYG 85 (273)
T ss_pred ECCCcC
Confidence 998764
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.014 Score=57.33 Aligned_cols=76 Identities=14% Similarity=0.233 Sum_probs=53.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC--Ccce---e--ecccchHHh-------hcC
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN--GVEI---I--YKPLSEMLS-------CAA 308 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g--~~~~---~--~~~~~~~~~-------~l~ 308 (513)
+.+++++|.|+ |.+|+.+++.|...|+ +|++++|++++.+.+..++. +..+ . +...+++.. ...
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 46899999998 9999999999999998 59999999888777666542 1111 1 111122222 235
Q ss_pred CCcEEEEcCCCC
Q 010322 309 DADVVFTSTASE 320 (513)
Q Consensus 309 ~aDVVI~AT~s~ 320 (513)
..|+||.+.+..
T Consensus 82 ~~d~vi~~ag~~ 93 (258)
T PRK07890 82 RVDALVNNAFRV 93 (258)
T ss_pred CccEEEECCccC
Confidence 689999988753
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0099 Score=60.97 Aligned_cols=70 Identities=17% Similarity=0.379 Sum_probs=50.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee---ecccchHHhhcCCCcEEEEcCCC
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII---YKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~---~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
++|+|+|+ |-+|+.+++.|...|. +|++..|+..+...+.. .+ .... +...+++.+++.++|+||.+++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~~~~~~l~~-~~-v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~ 74 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNLRKASFLKE-WG-AELVYGDLSLPETLPPSFKGVTAIIDASTS 74 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcChHHhhhHhh-cC-CEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence 37999997 9999999999999998 59999998766543332 22 1111 12234566778999999998754
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.015 Score=58.15 Aligned_cols=77 Identities=18% Similarity=0.359 Sum_probs=54.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceee--ccc---chHHh-------hc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIY--KPL---SEMLS-------CA 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~--~~~---~~~~~-------~l 307 (513)
++.+++++|.|+ |.+|+.+++.|...|+ +|++++|+.+..+.+.+++.. ..+.. .+. +++.. ..
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDF 85 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 467899999998 9999999999999999 599999998877777665421 11111 111 12222 13
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|++|.+++..
T Consensus 86 g~id~li~~ag~~ 98 (278)
T PRK08277 86 GPCDILINGAGGN 98 (278)
T ss_pred CCCCEEEECCCCC
Confidence 4789999998754
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.013 Score=57.68 Aligned_cols=77 Identities=16% Similarity=0.278 Sum_probs=54.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceee--ccc---chHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIY--KPL---SEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~--~~~---~~~~~~-------l 307 (513)
++.+++++|.|+ |.+|+.+++.|...|+. |.+++|++++...+.+.+.. ..+.+ .+. +.+.+. .
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAA-VAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 467899999999 99999999999999995 89999998777666655421 11111 111 122222 2
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|+||.+.+..
T Consensus 83 ~~~d~vi~~ag~~ 95 (262)
T PRK13394 83 GSVDILVSNAGIQ 95 (262)
T ss_pred CCCCEEEECCccC
Confidence 4589999998764
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.016 Score=57.40 Aligned_cols=76 Identities=14% Similarity=0.265 Sum_probs=53.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeec--cc---chHHh-------hc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK--PL---SEMLS-------CA 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~--~~---~~~~~-------~l 307 (513)
++.+++++|.|+ |.+|..+++.|...|+ +|++++|+.++.+++.+.+.. ..+.+. +. +++.. .+
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 357899999999 7899999999999999 699999998887766655421 111111 11 12221 13
Q ss_pred CCCcEEEEcCCC
Q 010322 308 ADADVVFTSTAS 319 (513)
Q Consensus 308 ~~aDVVI~AT~s 319 (513)
...|+||.+.+.
T Consensus 86 ~~id~vi~~Ag~ 97 (263)
T PRK07814 86 GRLDIVVNNVGG 97 (263)
T ss_pred CCCCEEEECCCC
Confidence 478999999774
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.017 Score=56.88 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=54.2
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec-----ccchHHh-------hcCCC
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK-----PLSEMLS-------CAADA 310 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~-----~~~~~~~-------~l~~a 310 (513)
+.+++++|.|+ |.+|+.+++.|...|++ |++++|+.++...+.+.++.. +... ..+++.. .....
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGAR-VVIADIKPARARLAALEIGPA-AIAVSLDVTRQDSIDRIVAAAVERFGGI 81 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHHhCCc-eEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 56889999998 99999999999999985 999999998887777665421 1111 1122222 23468
Q ss_pred cEEEEcCCCC
Q 010322 311 DVVFTSTASE 320 (513)
Q Consensus 311 DVVI~AT~s~ 320 (513)
|++|.+.+..
T Consensus 82 d~li~~ag~~ 91 (257)
T PRK07067 82 DILFNNAALF 91 (257)
T ss_pred CEEEECCCcC
Confidence 9999987653
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.017 Score=50.01 Aligned_cols=71 Identities=30% Similarity=0.470 Sum_probs=50.0
Q ss_pred EEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc---chHHh-hcCCCcEEEEcCCCCcc
Q 010322 249 MLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL---SEMLS-CAADADVVFTSTASEAP 322 (513)
Q Consensus 249 VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~---~~~~~-~l~~aDVVI~AT~s~~~ 322 (513)
|+|+|+|.+|+.+++.|...+ .+|+++++++++.+.+.+.. . .+..-+. +.+.+ -+.++|.||.+|+....
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~~~~~~~~~~-~-~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~ 75 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPERVEELREEG-V-EVIYGDATDPEVLERAGIEKADAVVILTDDDEE 75 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTT-S-EEEES-TTSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcHHHHHHHhcc-c-ccccccchhhhHHhhcCccccCEEEEccCCHHH
Confidence 689999999999999999955 46999999999987766543 2 1111111 12222 36799999999987643
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.023 Score=51.88 Aligned_cols=75 Identities=19% Similarity=0.380 Sum_probs=52.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCC--HHHHHHHHHHhC--Ccceeeccc-----chHH-------hhcCC
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRS--EERVAAICEELN--GVEIIYKPL-----SEML-------SCAAD 309 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs--~~ra~~la~~~g--~~~~~~~~~-----~~~~-------~~l~~ 309 (513)
|+++|+|+ |++|+.+++.|...|...|+++.|+ .++..++..++. +..+.+... +++. +....
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 57999997 9999999999999988889999999 677777766653 112222221 1211 12347
Q ss_pred CcEEEEcCCCCc
Q 010322 310 ADVVFTSTASEA 321 (513)
Q Consensus 310 aDVVI~AT~s~~ 321 (513)
.|++|.+.+...
T Consensus 81 ld~li~~ag~~~ 92 (167)
T PF00106_consen 81 LDILINNAGIFS 92 (167)
T ss_dssp ESEEEEECSCTT
T ss_pred cccccccccccc
Confidence 899998877654
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0081 Score=60.24 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=46.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCC---CeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGC---TKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~---~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
..+|.|||+|.||.+++..|...|. .+|++++|+.++. + .. ...+..+.+..+|+||.|++...
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-------~---~~--~~~~~~~~~~~~D~Vilavkp~~ 69 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-------P---FV--YLQSNEELAKTCDIIVLAVKPDL 69 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-------C---eE--EeCChHHHHHhCCEEEEEeCHHH
Confidence 4689999999999999999998773 3599999986542 1 11 12233344568899999987643
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.021 Score=57.07 Aligned_cols=77 Identities=13% Similarity=0.324 Sum_probs=54.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-ceee-----cccchHHhh-------cC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-EIIY-----KPLSEMLSC-------AA 308 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~-----~~~~~~~~~-------l~ 308 (513)
.+.+++++|.|+ |.+|+.+++.|...|++ |++++|+.+..+++.+.++.. .+.+ ...+++.+. ..
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g 93 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAK-VCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFG 93 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 467899999998 99999999999999985 999999887776666655321 1111 111222222 24
Q ss_pred CCcEEEEcCCCC
Q 010322 309 DADVVFTSTASE 320 (513)
Q Consensus 309 ~aDVVI~AT~s~ 320 (513)
..|+||.+.+..
T Consensus 94 ~id~li~~Ag~~ 105 (280)
T PLN02253 94 TLDIMVNNAGLT 105 (280)
T ss_pred CCCEEEECCCcC
Confidence 689999998754
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.013 Score=60.18 Aligned_cols=74 Identities=19% Similarity=0.228 Sum_probs=50.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC------cceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG------VEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~------~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+|+|+|+|.||..++.+|...|.. |+++.|..++.+.+.++-|- ....+.......+....+|+||.||.+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~-V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~ 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLP-VRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCC-eEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH
Confidence 5799999999999999999999974 99999987777666553221 0001100001112235789999999886
Q ss_pred c
Q 010322 321 A 321 (513)
Q Consensus 321 ~ 321 (513)
.
T Consensus 82 ~ 82 (305)
T PRK05708 82 D 82 (305)
T ss_pred h
Confidence 4
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.014 Score=59.83 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=49.1
Q ss_pred EEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC------CcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 249 MLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN------GVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 249 VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g------~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
|.|||+|.||..++..|...|..+|+++|++++++...+..+. .....+....+. +.+.+||+||.|.+.|.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~p~ 78 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGIPR 78 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCCCC
Confidence 5799999999999999988774379999998776533322111 011122222343 45899999999987754
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.016 Score=59.13 Aligned_cols=74 Identities=19% Similarity=0.308 Sum_probs=49.6
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhCCc--ceeeccc-----c
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS-------------------EERVAAICEELNGV--EIIYKPL-----S 301 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs-------------------~~ra~~la~~~g~~--~~~~~~~-----~ 301 (513)
+|+|+|+|++|..+++.|...|+.+|+++|.+ ..|++..++.+... .+.+.+. +
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 58999999999999999999999999997753 12444333333210 1122221 1
Q ss_pred hHHhhcCCCcEEEEcCCCCc
Q 010322 302 EMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 302 ~~~~~l~~aDVVI~AT~s~~ 321 (513)
...+.+.++|+||+|+.+..
T Consensus 81 ~~~~f~~~fdvVi~alDn~~ 100 (291)
T cd01488 81 KDEEFYRQFNIIICGLDSIE 100 (291)
T ss_pred hhHHHhcCCCEEEECCCCHH
Confidence 12356789999999987653
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.016 Score=56.41 Aligned_cols=77 Identities=22% Similarity=0.405 Sum_probs=53.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeecc-----cchHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYKP-----LSEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~~-----~~~~~~~-------l 307 (513)
++.+++++|.|+ |.+|..+++.|...|+ +|++++|+.++..++..++.. ..+.+.. .+++.+. .
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNEL 82 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 356789999998 8999999999999998 699999998877666554421 1111111 1222222 2
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|+||.+.+..
T Consensus 83 ~~id~vi~~ag~~ 95 (239)
T PRK07666 83 GSIDILINNAGIS 95 (239)
T ss_pred CCccEEEEcCccc
Confidence 4789999998764
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0049 Score=54.80 Aligned_cols=70 Identities=21% Similarity=0.290 Sum_probs=45.0
Q ss_pred eEEEEcc-cHHHHHHHHHHHH-cCCCeEEEEeCCHH-H-HHHHHHHhCCcceeecccchHHhhcCCCcEEEEcC
Q 010322 248 RMLVIGA-GKMGKLVIKHLVA-KGCTKMVVVNRSEE-R-VAAICEELNGVEIIYKPLSEMLSCAADADVVFTST 317 (513)
Q Consensus 248 ~VlVIGa-G~mG~~ia~~L~~-~G~~~V~v~nRs~~-r-a~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT 317 (513)
+|+|+|+ |.||+.+++.+.. .|.+=+.+++|++. . .+++.+-.+.....+...+++.+.+..+||||+.|
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT 75 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC
Confidence 7999999 9999999999998 56665667788751 1 11122211211111223467778888899999999
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.016 Score=56.76 Aligned_cols=76 Identities=22% Similarity=0.305 Sum_probs=52.6
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC--Ccceee--ccc---chHHh-------hcC
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN--GVEIIY--KPL---SEMLS-------CAA 308 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g--~~~~~~--~~~---~~~~~-------~l~ 308 (513)
+.+++|+|.|+ |.+|+.+++.|...|. +|++++|++++...+..++. +..+.+ .++ +++.+ ...
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 35789999997 9999999999999998 49999999887766655541 111111 111 12222 234
Q ss_pred CCcEEEEcCCCC
Q 010322 309 DADVVFTSTASE 320 (513)
Q Consensus 309 ~aDVVI~AT~s~ 320 (513)
..|+||.+++..
T Consensus 81 ~~d~vi~~a~~~ 92 (258)
T PRK12429 81 GVDILVNNAGIQ 92 (258)
T ss_pred CCCEEEECCCCC
Confidence 689999998754
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.011 Score=63.70 Aligned_cols=76 Identities=21% Similarity=0.141 Sum_probs=47.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC-CCcEEEEcCCCC
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA-DADVVFTSTASE 320 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~-~aDVVI~AT~s~ 320 (513)
+.+++|+|+|.|.+|.++++.|...|++ |++++++........+.+....+.+.......+.+. ++|+||.+.+.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~-V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~ 79 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGAN-VTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIP 79 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCC
Confidence 5689999999999999999999999985 999998653322222222111112221111122233 389888887654
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.011 Score=57.94 Aligned_cols=47 Identities=17% Similarity=0.281 Sum_probs=39.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL 290 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~ 290 (513)
.+.+++++|.|+ |.+|..+++.|...|++ |++++|+.++...+.+.+
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~-v~~~~r~~~~~~~~~~~~ 51 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAK-VVVADRDAAGGEETVALI 51 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHH
Confidence 467899999998 99999999999999985 999999988765555443
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.013 Score=67.15 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=33.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHH
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERV 283 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra 283 (513)
++|.|||+|.||..++..+...|+. |++++++++.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~~~~l 349 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVP-VIMKDINQKAL 349 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCe-EEEEeCCHHHH
Confidence 6899999999999999999999985 99999998765
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.01 Score=63.69 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=49.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHh---------------hcCCCc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLS---------------CAADAD 311 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~---------------~l~~aD 311 (513)
++|.|||+|-||..++..|+..|. +|+++|+++++.+.+.. |.. .+.. ..+.+ .+.++|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~--g~~--~~~e-~~l~~~l~~~~~~g~l~~~~~~~~aD 77 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINR--GEI--HIVE-PDLDMVVKTAVEGGYLRATTTPEPAD 77 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHC--CCC--CcCC-CCHHHHHHHHhhcCceeeecccccCC
Confidence 689999999999999999999997 59999999998876432 211 1000 01110 134799
Q ss_pred EEEEcCCCC
Q 010322 312 VVFTSTASE 320 (513)
Q Consensus 312 VVI~AT~s~ 320 (513)
+||.|++.|
T Consensus 78 vvii~vptp 86 (415)
T PRK11064 78 AFLIAVPTP 86 (415)
T ss_pred EEEEEcCCC
Confidence 999999987
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.019 Score=56.72 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=52.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcce---eecc-cchHHhhc-CCCcEEEEc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEI---IYKP-LSEMLSCA-ADADVVFTS 316 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~---~~~~-~~~~~~~l-~~aDVVI~A 316 (513)
...+++|+|+|+ |.+|+.+++.|...|+. |+++.|+.++...+........+ .+.. .+++.+.+ .++|+||.+
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~ 92 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICA 92 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEEC
Confidence 346789999997 99999999999999974 88899998776443322111111 1111 12344455 589999998
Q ss_pred CCCC
Q 010322 317 TASE 320 (513)
Q Consensus 317 T~s~ 320 (513)
++..
T Consensus 93 ~g~~ 96 (251)
T PLN00141 93 TGFR 96 (251)
T ss_pred CCCC
Confidence 8753
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.015 Score=56.53 Aligned_cols=75 Identities=23% Similarity=0.238 Sum_probs=53.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-HHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-ERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
++.|++|+|||.|..|..=++.|...|+. |+|++... .....+.+..+ +.+..-.-..+.+.++++||.||+.+.
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~-v~Vvs~~~~~el~~~~~~~~---i~~~~~~~~~~~~~~~~lviaAt~d~~ 84 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGAD-VTVVSPEFEPELKALIEEGK---IKWIEREFDAEDLDDAFLVIAATDDEE 84 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCCE-EEEEcCCccHHHHHHHHhcC---cchhhcccChhhhcCceEEEEeCCCHH
Confidence 57899999999999999999999999995 88888876 44445544432 122221111223456999999999864
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.018 Score=57.58 Aligned_cols=75 Identities=16% Similarity=0.128 Sum_probs=52.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-c-e--eecccchHHhh-------cCCCcE
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-E-I--IYKPLSEMLSC-------AADADV 312 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-~-~--~~~~~~~~~~~-------l~~aDV 312 (513)
.+++++|.|+ |.+|+.+++.|...|++ |++++|++++...+....+.. . + .+...+.+... ....|+
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~ 81 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHR-VVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDV 81 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCE-EEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 3678999999 99999999999999985 999999998887776654321 0 1 11111222222 236899
Q ss_pred EEEcCCCC
Q 010322 313 VFTSTASE 320 (513)
Q Consensus 313 VI~AT~s~ 320 (513)
||.+.+..
T Consensus 82 vv~~ag~~ 89 (277)
T PRK06180 82 LVNNAGYG 89 (277)
T ss_pred EEECCCcc
Confidence 99998764
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.022 Score=58.76 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=53.9
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhCCccee-----ecccchHHhhcCCCcEEEEc
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKG-CTKMVVVNRSEERVAAICEELNGVEII-----YKPLSEMLSCAADADVVFTS 316 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G-~~~V~v~nRs~~ra~~la~~~g~~~~~-----~~~~~~~~~~l~~aDVVI~A 316 (513)
+.|++|+|.|+ |.+|+.+++.|...| ..+|++++|+..+...+...+....+. +...+++.+.+.++|+||.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~ 81 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA 81 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence 36899999998 999999999999886 346999998876654454444221111 12223455667789999998
Q ss_pred CCCC
Q 010322 317 TASE 320 (513)
Q Consensus 317 T~s~ 320 (513)
.+..
T Consensus 82 Ag~~ 85 (324)
T TIGR03589 82 AALK 85 (324)
T ss_pred cccC
Confidence 7653
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.017 Score=56.76 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=53.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeec--cc---chHHh-------hc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK--PL---SEMLS-------CA 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~--~~---~~~~~-------~l 307 (513)
.+.+++++|.|+ |++|..+++.|...|++ |++++|++++.+.+.+++.. ....+. +. ++... ..
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAK-VVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 357899999998 99999999999999984 99999998888777665421 011111 11 12221 13
Q ss_pred CCCcEEEEcCCC
Q 010322 308 ADADVVFTSTAS 319 (513)
Q Consensus 308 ~~aDVVI~AT~s 319 (513)
...|++|.+.+.
T Consensus 82 ~~id~li~~ag~ 93 (254)
T PRK07478 82 GGLDIAFNNAGT 93 (254)
T ss_pred CCCCEEEECCCC
Confidence 468999998875
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.014 Score=57.28 Aligned_cols=46 Identities=22% Similarity=0.450 Sum_probs=39.6
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL 290 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~ 290 (513)
+.+++|+|.|+ |.+|+.+++.|...|++ |++++|++++++.+...+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~r~~~~~~~~~~~l 48 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGI-VIAADIDKEALNELLESL 48 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEecChHHHHHHHHHH
Confidence 36899999998 99999999999999985 899999988876666554
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.044 Score=58.95 Aligned_cols=78 Identities=21% Similarity=0.374 Sum_probs=57.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc---chHH-hhcCCCcEEEEcCC
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL---SEML-SCAADADVVFTSTA 318 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~---~~~~-~~l~~aDVVI~AT~ 318 (513)
....++++|+|+|.+|+.+++.|...|.. |+++++++++.+.+.+.+.+..+..-+. +.+. ..+.++|.||.+|+
T Consensus 228 ~~~~~~iiIiG~G~~g~~l~~~L~~~~~~-v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~ 306 (453)
T PRK09496 228 EKPVKRVMIVGGGNIGYYLAKLLEKEGYS-VKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTN 306 (453)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCe-EEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCC
Confidence 45678999999999999999999998884 9999999998877777643221111111 1222 23578999999998
Q ss_pred CCc
Q 010322 319 SEA 321 (513)
Q Consensus 319 s~~ 321 (513)
...
T Consensus 307 ~~~ 309 (453)
T PRK09496 307 DDE 309 (453)
T ss_pred CcH
Confidence 764
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.026 Score=55.39 Aligned_cols=74 Identities=20% Similarity=0.294 Sum_probs=51.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceee-----cccchHHhhcC-CCcEEEEc
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIY-----KPLSEMLSCAA-DADVVFTS 316 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~-----~~~~~~~~~l~-~aDVVI~A 316 (513)
+++++|.|+ |.+|+.+++.|...|++ |+++.|++.+...+...... ..+.+ ...+++...+. +.|+||.+
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHN-VIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 468999998 99999999999999985 88899988776665543211 01111 11223333343 79999999
Q ss_pred CCCC
Q 010322 317 TASE 320 (513)
Q Consensus 317 T~s~ 320 (513)
.+..
T Consensus 81 ag~~ 84 (257)
T PRK09291 81 AGIG 84 (257)
T ss_pred CCcC
Confidence 8754
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.014 Score=58.17 Aligned_cols=47 Identities=23% Similarity=0.408 Sum_probs=39.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL 290 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~ 290 (513)
.+.+++++|.|+ |.+|..+++.|...|+. |++++|+++....+.+.+
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~ 53 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRSQEKVDAAVAQL 53 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHH
Confidence 367899999999 99999999999999985 999999988766555443
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.012 Score=66.77 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=54.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHh---C-Ccceeec--
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS-------------------EERVAAICEEL---N-GVEIIYK-- 298 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs-------------------~~ra~~la~~~---g-~~~~~~~-- 298 (513)
+.+.+|+|+|+|++|..++.+|...|+.+++++|.+ ..|++.+++.+ + ...+...
T Consensus 41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~ 120 (679)
T PRK14851 41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPA 120 (679)
T ss_pred HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEec
Confidence 468999999999999999999999999999987753 11443344333 1 1122221
Q ss_pred --ccchHHhhcCCCcEEEEcCCCC
Q 010322 299 --PLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 299 --~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
..++..+.+.++|+||+|+-..
T Consensus 121 ~i~~~n~~~~l~~~DvVid~~D~~ 144 (679)
T PRK14851 121 GINADNMDAFLDGVDVVLDGLDFF 144 (679)
T ss_pred CCChHHHHHHHhCCCEEEECCCCC
Confidence 1234566788999999999753
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.02 Score=59.01 Aligned_cols=91 Identities=25% Similarity=0.333 Sum_probs=63.8
Q ss_pred CCeEEEEcccHHHH-HHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCC
Q 010322 246 TARMLVIGAGKMGK-LVIKHLVAKG--CTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASE 320 (513)
Q Consensus 246 g~~VlVIGaG~mG~-~ia~~L~~~G--~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~ 320 (513)
..+|+|||+|.++. ..+..+...+ +.-+.+++|+++++++++++++.. ..+.++.+.++ +.|+|+-||+..
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~----~~~~~~~~ll~~~~iD~V~Iatp~~ 78 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIA----KAYTDLEELLADPDIDAVYIATPNA 78 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEEcCCCh
Confidence 35899999996664 5777887765 466888999999999999999742 23455666654 479999999987
Q ss_pred ccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 321 APLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 321 ~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.+. +....+. ..|.-|+++=
T Consensus 79 ~H~---e~~~~AL-----~aGkhVl~EK 98 (342)
T COG0673 79 LHA---ELALAAL-----EAGKHVLCEK 98 (342)
T ss_pred hhH---HHHHHHH-----hcCCEEEEcC
Confidence 553 2222211 1355788773
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.016 Score=60.12 Aligned_cols=70 Identities=24% Similarity=0.325 Sum_probs=48.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee-------------ecccchHHhhcCCCcEE
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII-------------YKPLSEMLSCAADADVV 313 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~-------------~~~~~~~~~~l~~aDVV 313 (513)
++|+|||+|.||..++..|...|. +|++++|++. .+.+.+ .+. .+. +....+. +.+..+|+|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~~~-~~~~~~-~g~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v 77 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRARI-GDELRA-HGL-TLTDYRGRDVRVPPSAIAFSTDP-AALATADLV 77 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecHHH-HHHHHh-cCc-eeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence 579999999999999999999997 4999999753 334333 221 100 0011233 456789999
Q ss_pred EEcCCCCc
Q 010322 314 FTSTASEA 321 (513)
Q Consensus 314 I~AT~s~~ 321 (513)
|.|++.+.
T Consensus 78 il~vk~~~ 85 (341)
T PRK08229 78 LVTVKSAA 85 (341)
T ss_pred EEEecCcc
Confidence 99998764
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.014 Score=58.59 Aligned_cols=77 Identities=13% Similarity=0.212 Sum_probs=54.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc--ceeec--cc---chHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV--EIIYK--PL---SEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~--~~~~~--~~---~~~~~~-------l 307 (513)
++.+++++|.|+ |++|+.+++.|...|++ |++++|+.+++.++.+++... .+.+. +. +++.+. .
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~-Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGAR-VVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 467899999997 99999999999999995 999999988777666554211 11111 11 222222 2
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|+||++.+..
T Consensus 82 g~id~li~nAg~~ 94 (275)
T PRK05876 82 GHVDVVFSNAGIV 94 (275)
T ss_pred CCCCEEEECCCcC
Confidence 4579999988753
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.013 Score=57.02 Aligned_cols=46 Identities=17% Similarity=0.400 Sum_probs=39.4
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL 290 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~ 290 (513)
+.+++++|+|+ |.+|..+++.|...|+ +|++++|+..+.....+++
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~ 49 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAEC 49 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHH
Confidence 57899999998 9999999999999998 4999999988776655543
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.021 Score=56.18 Aligned_cols=74 Identities=18% Similarity=0.372 Sum_probs=52.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceee-----cccchHHhhc-------CCCcE
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIY-----KPLSEMLSCA-------ADADV 312 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~-----~~~~~~~~~l-------~~aDV 312 (513)
+++++|+|+ |.+|+.++..|...|+ +|++++|++++.+.+.+.+....+.+ ...+++...+ ...|+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 80 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDV 80 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 578999998 9999999999999998 59999999988877776653211111 1112222222 35899
Q ss_pred EEEcCCCC
Q 010322 313 VFTSTASE 320 (513)
Q Consensus 313 VI~AT~s~ 320 (513)
||.+.+..
T Consensus 81 vi~~ag~~ 88 (257)
T PRK07074 81 LVANAGAA 88 (257)
T ss_pred EEECCCCC
Confidence 99998754
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.021 Score=55.26 Aligned_cols=76 Identities=12% Similarity=0.331 Sum_probs=51.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEe-CCHHHHHHHHHHhCCcceeecccc---hHHhh---cCCCcEEE
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVN-RSEERVAAICEELNGVEIIYKPLS---EMLSC---AADADVVF 314 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~n-Rs~~ra~~la~~~g~~~~~~~~~~---~~~~~---l~~aDVVI 314 (513)
.+.+++|+|.|+ |.+|+.+++.|...|++ |+++. ++.++.+++..+++.. ....+.. .+.+. ....|++|
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~-v~~~~~~~~~~~~~l~~~~~~~-~~~~D~~~~~~~~~~~~~~~~id~li 80 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGAN-VRFTYAGSKDAAERLAQETGAT-AVQTDSADRDAVIDVVRKSGALDILV 80 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEecCCCHHHHHHHHHHhCCe-EEecCCCCHHHHHHHHHHhCCCcEEE
Confidence 467899999998 99999999999999985 66654 4666776776665421 1111221 22222 24579999
Q ss_pred EcCCCC
Q 010322 315 TSTASE 320 (513)
Q Consensus 315 ~AT~s~ 320 (513)
.+.+..
T Consensus 81 ~~ag~~ 86 (237)
T PRK12742 81 VNAGIA 86 (237)
T ss_pred ECCCCC
Confidence 998754
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.016 Score=57.34 Aligned_cols=77 Identities=17% Similarity=0.321 Sum_probs=53.9
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC----Ccceeec-----ccchHHh-------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN----GVEIIYK-----PLSEMLS------- 305 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g----~~~~~~~-----~~~~~~~------- 305 (513)
++.+++++|.|+ |++|..+++.|...|++ |++++|+.++.+...+++. +..+... ..+++.+
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEA 83 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 567999999999 89999999999999995 9999999887766554431 1111111 1122221
Q ss_pred hcCCCcEEEEcCCCC
Q 010322 306 CAADADVVFTSTASE 320 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~ 320 (513)
.....|++|++.+..
T Consensus 84 ~~g~id~li~~Ag~~ 98 (265)
T PRK07062 84 RFGGVDMLVNNAGQG 98 (265)
T ss_pred hcCCCCEEEECCCCC
Confidence 234689999998753
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.022 Score=62.00 Aligned_cols=76 Identities=26% Similarity=0.295 Sum_probs=51.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHH--------------------HHHHHHHHhCCcceeecc--cc-
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEE--------------------RVAAICEELNGVEIIYKP--LS- 301 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~--------------------ra~~la~~~g~~~~~~~~--~~- 301 (513)
.+++|+|||+|++|..++..|...|.. |+++++.+. +..+...++|. .+.... ..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv-~~~~~~~v~~~ 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGI-EFHLNCEVGRD 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCC-EEECCCEeCCc
Confidence 578999999999999999999999985 999987641 22234445552 211111 01
Q ss_pred -hHHhhcCCCcEEEEcCCCCcc
Q 010322 302 -EMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 302 -~~~~~l~~aDVVI~AT~s~~~ 322 (513)
...+...++|.||.|||+..+
T Consensus 218 ~~~~~~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 218 ISLDDLLEDYDAVFLGVGTYRS 239 (467)
T ss_pred cCHHHHHhcCCEEEEEeCCCCC
Confidence 122223479999999999753
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.019 Score=56.03 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=52.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceee--cccc---hHHh-------hc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIY--KPLS---EMLS-------CA 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~--~~~~---~~~~-------~l 307 (513)
.+.+++++|.|+ |.+|..++++|...|+ +|++++|+......+.+.+.. ..... .+.. ++.. ..
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 457899999999 9999999999999998 599999998766555554311 01111 1111 2211 12
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|+||.+++..
T Consensus 82 ~~id~vi~~ag~~ 94 (250)
T PRK07774 82 GGIDYLVNNAAIY 94 (250)
T ss_pred CCCCEEEECCCCc
Confidence 4689999998853
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.022 Score=55.44 Aligned_cols=78 Identities=18% Similarity=0.259 Sum_probs=52.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeec--cc---chHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK--PL---SEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~--~~---~~~~~~-------l 307 (513)
.+.+++++|.|+ |.+|..+++.|...|+ +|+++.|+.++...+...+.. ..+.+. +. +++.+. .
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDF 81 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 356889999997 9999999999999998 599999997766555444321 111111 11 122222 2
Q ss_pred CCCcEEEEcCCCCc
Q 010322 308 ADADVVFTSTASEA 321 (513)
Q Consensus 308 ~~aDVVI~AT~s~~ 321 (513)
..+|+||.+.+...
T Consensus 82 ~~~d~vi~~ag~~~ 95 (251)
T PRK12826 82 GRLDILVANAGIFP 95 (251)
T ss_pred CCCCEEEECCCCCC
Confidence 36899999986643
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.022 Score=55.96 Aligned_cols=72 Identities=19% Similarity=0.366 Sum_probs=51.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec-----ccchHHh-------hcCCCcEE
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK-----PLSEMLS-------CAADADVV 313 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~-----~~~~~~~-------~l~~aDVV 313 (513)
++++|+|+ |.+|..+++.|...|+ +|++++|+++++..+...++. .+.+. ..+++.+ ...+.|+|
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~v 78 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGD-NLYIAQLDVRNRAAIEEMLASLPAEWRNIDVL 78 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcc-ceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 46899998 9999999999999998 499999999888777665542 11111 1122222 23478999
Q ss_pred EEcCCCC
Q 010322 314 FTSTASE 320 (513)
Q Consensus 314 I~AT~s~ 320 (513)
|.+.+..
T Consensus 79 i~~ag~~ 85 (248)
T PRK10538 79 VNNAGLA 85 (248)
T ss_pred EECCCcc
Confidence 9998753
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.016 Score=56.12 Aligned_cols=46 Identities=30% Similarity=0.470 Sum_probs=39.1
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL 290 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~ 290 (513)
+.+++++|.|+ |.+|..+++.|..+|.. |++++|++++...+...+
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~~~~~~~~~~~~ 49 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSNEEAAEALAAEL 49 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCChhHHHHHHHHH
Confidence 46789999998 99999999999999986 999999988766555443
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.007 Score=64.81 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=51.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-----HHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCC
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-----ERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-----~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
+.|++|+|||+|.+|.+.+..|+..|+. |++.-|.. .+..+.|.+-| . ...++.++++.||+|+..||
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGvn-Vvvglr~~~id~~~~s~~kA~~dG---F---~v~~~~Ea~~~ADvVviLlP 106 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGLD-ISYALRKEAIAEKRASWRKATENG---F---KVGTYEELIPQADLVINLTP 106 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCccccce-eEEeccccccccccchHHHHHhcC---C---ccCCHHHHHHhCCEEEEcCC
Confidence 5799999999999999999999999995 77555542 11222233322 1 22457777899999999998
Q ss_pred CCc
Q 010322 319 SEA 321 (513)
Q Consensus 319 s~~ 321 (513)
...
T Consensus 107 Dt~ 109 (487)
T PRK05225 107 DKQ 109 (487)
T ss_pred hHH
Confidence 863
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.026 Score=58.03 Aligned_cols=74 Identities=19% Similarity=0.268 Sum_probs=50.2
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC------CcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN------GVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g------~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
++|.|||+|.||..++..+...|..+|+++|++.+.+...+..+. .....+....+..+ +.++|+||-|.|.|
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 479999999999999999999876469999997654432221110 00112222244444 78999999998876
Q ss_pred c
Q 010322 321 A 321 (513)
Q Consensus 321 ~ 321 (513)
.
T Consensus 81 ~ 81 (305)
T TIGR01763 81 R 81 (305)
T ss_pred C
Confidence 4
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.021 Score=59.22 Aligned_cols=77 Identities=17% Similarity=0.302 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC--Ccceee-----cccchHHh-------hc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN--GVEIIY-----KPLSEMLS-------CA 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g--~~~~~~-----~~~~~~~~-------~l 307 (513)
.+.+++|+|.|+ |++|+.+++.|...|++ |++++|+.++++++.+++. +..+.+ ...+++.+ .+
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~~-Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGAK-VVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 467899999998 99999999999999984 9999999988877666542 111111 11122222 23
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|++|++.+..
T Consensus 84 g~iD~lInnAg~~ 96 (334)
T PRK07109 84 GPIDTWVNNAMVT 96 (334)
T ss_pred CCCCEEEECCCcC
Confidence 4789999998753
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.016 Score=57.15 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=54.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC----Ccceeec--cc---chH-------Hh
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN----GVEIIYK--PL---SEM-------LS 305 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g----~~~~~~~--~~---~~~-------~~ 305 (513)
.+.+++++|+|+ |.+|..+++.|...|++ |++++|+.++.+.+..++. +..+... +. +++ .+
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~-v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGAD-VLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVED 84 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 467899999998 99999999999999984 9999999888776665542 1111111 11 111 22
Q ss_pred hcCCCcEEEEcCCC
Q 010322 306 CAADADVVFTSTAS 319 (513)
Q Consensus 306 ~l~~aDVVI~AT~s 319 (513)
.....|+||.+.+.
T Consensus 85 ~~g~id~li~~ag~ 98 (257)
T PRK09242 85 HWDGLHILVNNAGG 98 (257)
T ss_pred HcCCCCEEEECCCC
Confidence 24578999999875
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.019 Score=65.78 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=34.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVA 284 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~ 284 (513)
.-++|.|||+|.||..++..+...|.. |++++++++.++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~~~~l~ 350 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTP-IVMKDINQHSLD 350 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCe-EEEEeCCHHHHH
Confidence 346899999999999999999999985 999999987653
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.039 Score=54.39 Aligned_cols=76 Identities=14% Similarity=0.323 Sum_probs=52.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeec--ccc---hHHh-------hc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK--PLS---EMLS-------CA 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~--~~~---~~~~-------~l 307 (513)
.+.+++++|.|+ |.+|..+++.|...|+ +|++++|+.++.+.+.+.+.. ....+. +.. ++.. ..
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 467899999998 9999999999999998 599999998877665544321 011111 111 2211 12
Q ss_pred CCCcEEEEcCCC
Q 010322 308 ADADVVFTSTAS 319 (513)
Q Consensus 308 ~~aDVVI~AT~s 319 (513)
...|+||.+++.
T Consensus 88 ~~id~vi~~ag~ 99 (259)
T PRK08213 88 GHVDILVNNAGA 99 (259)
T ss_pred CCCCEEEECCCC
Confidence 468999999875
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.04 Score=53.41 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=54.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec--c---cchHHh-------hcCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK--P---LSEMLS-------CAAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~--~---~~~~~~-------~l~~ 309 (513)
++.+++++|.|+ |.+|+.+++.|...|+ .|++.+|+.++.+.+...++. .+.+. + .+++.+ ....
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEALAAELGE-RVKIFPANLSDRDEVKALGQKAEADLEG 80 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCC-ceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 457899999997 9999999999999998 588889998888777665542 11211 1 122222 1346
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|+||.+.+..
T Consensus 81 id~vi~~ag~~ 91 (245)
T PRK12936 81 VDILVNNAGIT 91 (245)
T ss_pred CCEEEECCCCC
Confidence 89999998764
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.023 Score=59.55 Aligned_cols=73 Identities=11% Similarity=0.315 Sum_probs=53.5
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCc-----ceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGV-----EIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~-----~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+|.|||+|.+|..++..|...|. .++.++|.+.+++...+..+... ...+....+ .+.+++||+||-+.|.+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~d-y~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTD-YAVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCC-HHHhCCCCEEEECCCCC
Confidence 699999999999999999998876 57999999887776555554321 012211123 34478999999998875
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.015 Score=67.68 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=54.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHh---C-Ccceeec--
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS-------------------EERVAAICEEL---N-GVEIIYK-- 298 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs-------------------~~ra~~la~~~---g-~~~~~~~-- 298 (513)
+...+|+|+|+|++|..++.+|...|+.+|+++|-+ ..|++.+++.+ + ...+.+.
T Consensus 330 L~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~ 409 (989)
T PRK14852 330 LLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPE 409 (989)
T ss_pred HhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEec
Confidence 578999999999999999999999999999987653 11443344333 2 1122222
Q ss_pred --ccchHHhhcCCCcEEEEcCCCC
Q 010322 299 --PLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 299 --~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
..++..+.+.++|+||+|+-..
T Consensus 410 ~I~~en~~~fl~~~DiVVDa~D~~ 433 (989)
T PRK14852 410 GVAAETIDAFLKDVDLLVDGIDFF 433 (989)
T ss_pred CCCHHHHHHHhhCCCEEEECCCCc
Confidence 1234666788999999998753
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.013 Score=56.80 Aligned_cols=71 Identities=21% Similarity=0.377 Sum_probs=50.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceee-----cccchHHhh---cCCCcEEE
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIY-----KPLSEMLSC---AADADVVF 314 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~-----~~~~~~~~~---l~~aDVVI 314 (513)
+.+++++|+|+ |.+|+.+++.|...|+.+|+++.|+.++... .+. .+.+ ...+++.+. ....|+||
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~----~~~-~~~~~~~D~~~~~~~~~~~~~~~~id~vi 78 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD----LGP-RVVPLQLDVTDPASVAAAAEAASDVTILV 78 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh----cCC-ceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence 46789999997 9999999999999998569999999876543 221 1111 112233332 33579999
Q ss_pred EcCCC
Q 010322 315 TSTAS 319 (513)
Q Consensus 315 ~AT~s 319 (513)
.+.+.
T Consensus 79 ~~ag~ 83 (238)
T PRK08264 79 NNAGI 83 (238)
T ss_pred ECCCc
Confidence 99876
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.027 Score=56.09 Aligned_cols=76 Identities=25% Similarity=0.390 Sum_probs=52.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC----cceeec--cc---chHHhhc-----
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG----VEIIYK--PL---SEMLSCA----- 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~----~~~~~~--~~---~~~~~~l----- 307 (513)
.+.+++++|.|+ |.+|..+++.|...|+ +|++++|+.++...+.+.+.. ..+.+. +. +++...+
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATA 82 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 357899999998 9999999999999998 599999998776655554321 111111 11 2222222
Q ss_pred --CCCcEEEEcCCC
Q 010322 308 --ADADVVFTSTAS 319 (513)
Q Consensus 308 --~~aDVVI~AT~s 319 (513)
...|+||.+.+.
T Consensus 83 ~~~~~d~li~~ag~ 96 (276)
T PRK05875 83 WHGRLHGVVHCAGG 96 (276)
T ss_pred HcCCCCEEEECCCc
Confidence 368999999874
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.018 Score=56.67 Aligned_cols=47 Identities=26% Similarity=0.344 Sum_probs=40.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL 290 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~ 290 (513)
.+.+++++|.|+ |.+|+.+++.|...|+ +|++++|+.+....+..++
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~ 55 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAAL 55 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHH
Confidence 578999999999 9999999999999998 5999999988776665543
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.021 Score=61.39 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=50.4
Q ss_pred eEEEEcccHHHHHHHH--HHH---HcCCCeEEEEeCCHHHHHHHHHHhC------CcceeecccchHHhhcCCCcEEEEc
Q 010322 248 RMLVIGAGKMGKLVIK--HLV---AKGCTKMVVVNRSEERVAAICEELN------GVEIIYKPLSEMLSCAADADVVFTS 316 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~--~L~---~~G~~~V~v~nRs~~ra~~la~~~g------~~~~~~~~~~~~~~~l~~aDVVI~A 316 (513)
+|.|||+|.+|...+. .+. .....+|.++|+++++++....... .....+....++.+++.+||+||.+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~a 81 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINT 81 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEe
Confidence 6999999999997554 343 2222479999999988765544321 1112343456778889999999999
Q ss_pred CCCC
Q 010322 317 TASE 320 (513)
Q Consensus 317 T~s~ 320 (513)
.+++
T Consensus 82 i~~~ 85 (423)
T cd05297 82 IQVG 85 (423)
T ss_pred eEec
Confidence 9863
|
linked to 3D####ucture |
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.017 Score=57.08 Aligned_cols=74 Identities=15% Similarity=0.314 Sum_probs=51.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-ceeec--cc---chHHhh-------cCCCc
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-EIIYK--PL---SEMLSC-------AADAD 311 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~--~~---~~~~~~-------l~~aD 311 (513)
+++|+|.|+ |.+|+.+++.|...|+ +|++++|+.++..++.+.+... .+.+. +. +++.+. ....|
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id 80 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPD 80 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 478999997 9999999999999998 5999999998887776654321 11111 11 222222 23479
Q ss_pred EEEEcCCCC
Q 010322 312 VVFTSTASE 320 (513)
Q Consensus 312 VVI~AT~s~ 320 (513)
++|++.+..
T Consensus 81 ~lv~~ag~~ 89 (257)
T PRK07024 81 VVIANAGIS 89 (257)
T ss_pred EEEECCCcC
Confidence 999998754
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.041 Score=56.47 Aligned_cols=77 Identities=14% Similarity=0.257 Sum_probs=54.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh----CCcceeec--cc---chHHh-------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL----NGVEIIYK--PL---SEMLS------- 305 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~----g~~~~~~~--~~---~~~~~------- 305 (513)
++.|++++|.|+ |+||..+++.|...|+ +|+++.|+.++.++..+++ ++..+.+. +. +++.+
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~ 89 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRA 89 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 578999999998 9999999999999998 5999999988876655543 11112211 12 22221
Q ss_pred hcCCCcEEEEcCCCC
Q 010322 306 CAADADVVFTSTASE 320 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~ 320 (513)
.....|++|++.+..
T Consensus 90 ~~~~iD~li~nAG~~ 104 (313)
T PRK05854 90 EGRPIHLLINNAGVM 104 (313)
T ss_pred hCCCccEEEECCccc
Confidence 124689999987753
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.023 Score=58.36 Aligned_cols=76 Identities=18% Similarity=0.266 Sum_probs=53.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeec--cc---chHHhhc-------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK--PL---SEMLSCA------- 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~--~~---~~~~~~l------- 307 (513)
...+++++|.|+ |.||..+++.|...|+ +|++++|+.++++++.+++.. ..+.+. +. +++.+.+
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (322)
T PRK07453 3 QDAKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALG 81 (322)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 346899999998 9999999999999997 599999999888777666531 111111 12 2222222
Q ss_pred CCCcEEEEcCCC
Q 010322 308 ADADVVFTSTAS 319 (513)
Q Consensus 308 ~~aDVVI~AT~s 319 (513)
...|+||++.+.
T Consensus 82 ~~iD~li~nAg~ 93 (322)
T PRK07453 82 KPLDALVCNAAV 93 (322)
T ss_pred CCccEEEECCcc
Confidence 258999999874
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.026 Score=59.02 Aligned_cols=76 Identities=20% Similarity=0.154 Sum_probs=49.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCc-------------ceeecccchHHhhcCCCcE
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGV-------------EIIYKPLSEMLSCAADADV 312 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~-------------~~~~~~~~~~~~~l~~aDV 312 (513)
.+|.|+|+|.||+.+++.+... +++=+.+++++++....++..+|-. ...+....+..+.+.++|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 3799999999999999988865 4554556666766666666644310 0001112234455578999
Q ss_pred EEEcCCCCcc
Q 010322 313 VFTSTASEAP 322 (513)
Q Consensus 313 VI~AT~s~~~ 322 (513)
||+||+....
T Consensus 82 VIdaT~~~~~ 91 (341)
T PRK04207 82 VVDATPGGVG 91 (341)
T ss_pred EEECCCchhh
Confidence 9999987644
|
|
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.026 Score=58.00 Aligned_cols=70 Identities=24% Similarity=0.434 Sum_probs=53.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
+..+|.|||.|.||+..+..|..+|.. +..++|+. -..+++.+|.. .+....|+-+ +..|+|+-||...+
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~-li~hsRsd--yssaa~~yg~~--~ft~lhdlce--rhpDvvLlctsils 120 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHG-LICHSRSD--YSSAAEKYGSA--KFTLLHDLCE--RHPDVVLLCTSILS 120 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCce-eEecCcch--hHHHHHHhccc--ccccHHHHHh--cCCCEEEEEehhhh
Confidence 346899999999999999999999985 88999986 45778888753 2222333322 57999999998754
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.021 Score=58.86 Aligned_cols=74 Identities=20% Similarity=0.354 Sum_probs=50.0
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-------------------HHHHHHHHHhCCc--ceeeccc----ch
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-------------------ERVAAICEELNGV--EIIYKPL----SE 302 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-------------------~ra~~la~~~g~~--~~~~~~~----~~ 302 (513)
+|+|+|+|++|..+++.|...|+.+|+++|.+. .|++..++.+... .+.+... .+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 589999999999999999999999999988531 2443434333210 1122111 11
Q ss_pred ---HHhhcCCCcEEEEcCCCCc
Q 010322 303 ---MLSCAADADVVFTSTASEA 321 (513)
Q Consensus 303 ---~~~~l~~aDVVI~AT~s~~ 321 (513)
..+.+.++|+||+|+-+..
T Consensus 81 ~~~~~~f~~~~DvVv~a~Dn~~ 102 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALDNLA 102 (312)
T ss_pred ccchHHHHhcCCEEEECCCCHH
Confidence 2355789999999987654
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.054 Score=53.42 Aligned_cols=77 Identities=25% Similarity=0.462 Sum_probs=53.9
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC---Ccceeec--cc---chHH---hhcCCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN---GVEIIYK--PL---SEML---SCAADA 310 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g---~~~~~~~--~~---~~~~---~~l~~a 310 (513)
++.+++++|.|+ |++|+.+++.|...|+ +|++++|+.++.+.+.+++. +..+.+. +. +++. +.....
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 82 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDI 82 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCC
Confidence 357899999999 8999999999999999 69999999888766655442 1111111 11 1222 224578
Q ss_pred cEEEEcCCCC
Q 010322 311 DVVFTSTASE 320 (513)
Q Consensus 311 DVVI~AT~s~ 320 (513)
|++|.+.+..
T Consensus 83 d~lv~~ag~~ 92 (259)
T PRK06125 83 DILVNNAGAI 92 (259)
T ss_pred CEEEECCCCC
Confidence 9999987653
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.049 Score=53.29 Aligned_cols=47 Identities=23% Similarity=0.453 Sum_probs=40.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL 290 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~ 290 (513)
.+.+++|+|.|+ |.+|..+++.|...|+ +|++++|+.++...+..++
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l 56 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEI 56 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHH
Confidence 357899999998 9999999999999998 5999999988776666554
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.041 Score=53.60 Aligned_cols=70 Identities=23% Similarity=0.442 Sum_probs=50.2
Q ss_pred EEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHH--HHHHHHHhCCcceeeccc---chHHhhcCCCcEEEEcCCCCc
Q 010322 249 MLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEER--VAAICEELNGVEIIYKPL---SEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 249 VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~r--a~~la~~~g~~~~~~~~~---~~~~~~l~~aDVVI~AT~s~~ 321 (513)
|+|+|+ |.+|+.++..|...|.+ |.+..|+... +..+. ..|. .+...++ +.+.+++.++|+||.+++...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l~R~~~~~~~~~l~-~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~ 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFS-VRALVRDPSSDRAQQLQ-ALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSH 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGC-EEEEESSSHHHHHHHHH-HTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCC-cEEEEeccchhhhhhhh-cccc-eEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence 789998 99999999999998875 9998997643 33333 2343 2222233 456678899999999999653
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.04 Score=55.05 Aligned_cols=76 Identities=14% Similarity=0.220 Sum_probs=52.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeec--c---cchHHh-------hc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK--P---LSEMLS-------CA 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~--~---~~~~~~-------~l 307 (513)
.+.+++++|.|+ |++|+.+++.|...|++ |++++|+ ++..++.+++.. ..+... + .+++.. ..
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~-vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAY-VLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 467899999999 99999999999999984 9999999 666666555421 011111 1 112221 23
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|++|++.+..
T Consensus 81 g~id~li~~Ag~~ 93 (272)
T PRK08589 81 GRVDVLFNNAGVD 93 (272)
T ss_pred CCcCEEEECCCCC
Confidence 4689999998753
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.024 Score=55.04 Aligned_cols=76 Identities=18% Similarity=0.325 Sum_probs=51.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEE-eCCHHHHHHHHHHhCC--cceeec--cc---chHHhh-------c
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVV-NRSEERVAAICEELNG--VEIIYK--PL---SEMLSC-------A 307 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~-nRs~~ra~~la~~~g~--~~~~~~--~~---~~~~~~-------l 307 (513)
+.+++++|+|+ |.+|..+++.|...|++ |+++ +|+.++...+...+.. ..+.+. +. +++.+. .
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAK-VVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKF 81 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 56789999998 99999999999999985 7777 9988777665554321 111111 12 122222 2
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|+||.+.+..
T Consensus 82 ~~id~vi~~ag~~ 94 (247)
T PRK05565 82 GKIDILVNNAGIS 94 (247)
T ss_pred CCCCEEEECCCcC
Confidence 3689999987654
|
|
| >cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.061 Score=54.05 Aligned_cols=156 Identities=15% Similarity=0.106 Sum_probs=84.8
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccccC-CCchHHHH
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAA-GAVSVSSA 230 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~~-~~~Sva~~ 230 (513)
...|+|+++.+..++++++...+|+..+...- . ..-..|....+...--...+.+++.+........ .+...++.
T Consensus 59 ~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~-~---~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~ 134 (326)
T cd08272 59 AILGCDVAGVVEAVGEGVTRFRVGDEVYGCAG-G---LGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWE 134 (326)
T ss_pred cccccceeEEEEEeCCCCCCCCCCCEEEEccC-C---cCCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHH
Confidence 35799999999999998888888988764210 0 0000111111111101112223332222211110 01112222
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEc-ccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc----chHHh
Q 010322 231 AVELALMKLPESSHATARMLVIG-AGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL----SEMLS 305 (513)
Q Consensus 231 Av~la~~~~~~~~l~g~~VlVIG-aG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~----~~~~~ 305 (513)
++. . .. ....|.+++|.| +|.+|.+++..+...|++ |+++.++ ++.. ++..++.. ..+... ..+..
T Consensus 135 ~l~---~-~~-~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~-v~~~~~~-~~~~-~~~~~g~~-~~~~~~~~~~~~~~~ 205 (326)
T cd08272 135 GLV---D-RA-AVQAGQTVLIHGGAGGVGHVAVQLAKAAGAR-VYATASS-EKAA-FARSLGAD-PIIYYRETVVEYVAE 205 (326)
T ss_pred HHH---H-hc-CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCE-EEEEech-HHHH-HHHHcCCC-EEEecchhHHHHHHH
Confidence 211 1 11 234689999999 599999999999999986 7777777 7764 44666642 111111 11122
Q ss_pred hc--CCCcEEEEcCCCC
Q 010322 306 CA--ADADVVFTSTASE 320 (513)
Q Consensus 306 ~l--~~aDVVI~AT~s~ 320 (513)
.. .++|++++|+++.
T Consensus 206 ~~~~~~~d~v~~~~~~~ 222 (326)
T cd08272 206 HTGGRGFDVVFDTVGGE 222 (326)
T ss_pred hcCCCCCcEEEECCChH
Confidence 22 3689999999874
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.021 Score=58.08 Aligned_cols=77 Identities=18% Similarity=0.302 Sum_probs=52.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC----Ccceeec--cc---chHHh-------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN----GVEIIYK--PL---SEMLS------- 305 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g----~~~~~~~--~~---~~~~~------- 305 (513)
++.+++|+|.|+ |.+|..+++.|...|+ +|+++.|+.++.....+.+. +..+.+. +. +++..
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 91 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA 91 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 567899999998 9999999999999998 58999999887655443331 1111111 11 12222
Q ss_pred hcCCCcEEEEcCCCC
Q 010322 306 CAADADVVFTSTASE 320 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~ 320 (513)
.....|+||.+.+..
T Consensus 92 ~~~~iD~li~nAg~~ 106 (306)
T PRK06197 92 AYPRIDLLINNAGVM 106 (306)
T ss_pred hCCCCCEEEECCccc
Confidence 124689999998753
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.031 Score=59.83 Aligned_cols=77 Identities=16% Similarity=0.274 Sum_probs=52.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC-c-ce--eecccchHHhhcCCCcEEEEcC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG-V-EI--IYKPLSEMLSCAADADVVFTST 317 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~-~-~~--~~~~~~~~~~~l~~aDVVI~AT 317 (513)
.+.+++|+|.|+ |.+|+.+++.|...|++ |++++|+.++........+. . .+ .+...+++.+.+.+.|++|++.
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~-Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA 253 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAK-VVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH 253 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence 357899999999 99999999999999984 88889987665332221111 0 01 1112233455567899999987
Q ss_pred CCC
Q 010322 318 ASE 320 (513)
Q Consensus 318 ~s~ 320 (513)
|..
T Consensus 254 Gi~ 256 (406)
T PRK07424 254 GIN 256 (406)
T ss_pred CcC
Confidence 653
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.025 Score=59.69 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=53.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC------CeEEEEeCCHHH-----HHHHHHHh------CCcc--eeecccchHHh
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGC------TKMVVVNRSEER-----VAAICEEL------NGVE--IIYKPLSEMLS 305 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~------~~V~v~nRs~~r-----a~~la~~~------g~~~--~~~~~~~~~~~ 305 (513)
...+|.|||+|.+|.+++..|...|. .+|.+|.|+++. .+.+.... ++.. -.+....++.+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 34689999999999999999998872 479999998752 33333221 1100 01122356677
Q ss_pred hcCCCcEEEEcCCCCc
Q 010322 306 CAADADVVFTSTASEA 321 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~ 321 (513)
++.++|+||.|+++..
T Consensus 90 av~~aDiIvlAVPsq~ 105 (365)
T PTZ00345 90 AVEDADLLIFVIPHQF 105 (365)
T ss_pred HHhcCCEEEEEcChHH
Confidence 7889999999998853
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.025 Score=64.19 Aligned_cols=76 Identities=25% Similarity=0.319 Sum_probs=51.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHH--------------------HHHHHHHHhCCcceeecc---cc
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEE--------------------RVAAICEELNGVEIIYKP---LS 301 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~--------------------ra~~la~~~g~~~~~~~~---~~ 301 (513)
.+++|+|||+|+.|..+|..|...|.+ |+|+++.+. +..+..+.+|. .+.... .+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv-~~~~~~~v~~~ 403 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGI-EFELNCEVGKD 403 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCe-EEECCCEeCCc
Confidence 588999999999999999999999985 999988532 11233344442 111100 01
Q ss_pred -hHHhhcCCCcEEEEcCCCCcc
Q 010322 302 -EMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 302 -~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.+.....++|.||.|||+..+
T Consensus 404 i~~~~~~~~~DavilAtGa~~~ 425 (654)
T PRK12769 404 ISLESLLEDYDAVFVGVGTYRS 425 (654)
T ss_pred CCHHHHHhcCCEEEEeCCCCCC
Confidence 222333579999999998654
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.025 Score=64.07 Aligned_cols=76 Identities=20% Similarity=0.248 Sum_probs=51.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHH--------------------HHHHHHHHhCCcceeecc---cc
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEE--------------------RVAAICEELNGVEIIYKP---LS 301 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~--------------------ra~~la~~~g~~~~~~~~---~~ 301 (513)
.+++|+|||+|++|..++..|...|.+ |+++++.+. +..++...+|. .+.+.. .+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~-Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv-~~~~~~~v~~~ 386 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQ-VDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGI-DFHLNCEIGRD 386 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCc-EEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCe-EEEcCCccCCc
Confidence 489999999999999999999999985 999988752 11233344442 111111 01
Q ss_pred -hHHhhcCCCcEEEEcCCCCcc
Q 010322 302 -EMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 302 -~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.+.+...++|.||.|||+..+
T Consensus 387 ~~~~~l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 387 ITFSDLTSEYDAVFIGVGTYGM 408 (639)
T ss_pred CCHHHHHhcCCEEEEeCCCCCC
Confidence 223334579999999999654
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.023 Score=59.34 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=50.4
Q ss_pred eEEEEcccHHHHHHHHHHHHcCC-------CeEEEEeC-----CHHHHHHHHHHhCCc----cee----ecccchHHhhc
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGC-------TKMVVVNR-----SEERVAAICEELNGV----EII----YKPLSEMLSCA 307 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~-------~~V~v~nR-----s~~ra~~la~~~g~~----~~~----~~~~~~~~~~l 307 (513)
+|.|||+|..|.+++..|...|. .+|++|.| +.+-.+.+....... .+. +....++.+++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 58999999999999999998771 46999998 433333333221110 011 11235677888
Q ss_pred CCCcEEEEcCCCCc
Q 010322 308 ADADVVFTSTASEA 321 (513)
Q Consensus 308 ~~aDVVI~AT~s~~ 321 (513)
.++|+||.|+|+..
T Consensus 81 ~~ADiIIlAVPs~~ 94 (342)
T TIGR03376 81 KGADILVFVIPHQF 94 (342)
T ss_pred hcCCEEEEECChHH
Confidence 99999999999853
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.021 Score=56.46 Aligned_cols=76 Identities=21% Similarity=0.357 Sum_probs=53.2
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC-cceeec--cc---chHHhh------cCCC
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG-VEIIYK--PL---SEMLSC------AADA 310 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~-~~~~~~--~~---~~~~~~------l~~a 310 (513)
+.+++++|+|+ |.+|..+++.|...|++ |++++|+.++...+..++.. ..+.+. +. +++.+. ....
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 81 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGAR-LLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGI 81 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCC
Confidence 46889999997 99999999999999985 99999998887777655311 011111 11 121111 3568
Q ss_pred cEEEEcCCCC
Q 010322 311 DVVFTSTASE 320 (513)
Q Consensus 311 DVVI~AT~s~ 320 (513)
|+||.+.+..
T Consensus 82 d~lv~~ag~~ 91 (263)
T PRK09072 82 NVLINNAGVN 91 (263)
T ss_pred CEEEECCCCC
Confidence 9999998764
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.059 Score=52.82 Aligned_cols=76 Identities=17% Similarity=0.261 Sum_probs=51.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec-----ccchHHhh-------cCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK-----PLSEMLSC-------AAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~-----~~~~~~~~-------l~~ 309 (513)
++.+++|+|.|+ |.+|..+++.|...|++ |++++|+.... .....+........ ..+++... ...
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~-Vi~~~r~~~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 89 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGAR-VALLDRSEDVA-EVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGR 89 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHH-HHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 467899999998 99999999999999985 99999987643 33443322111111 11122221 246
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|+||.+.+..
T Consensus 90 ~d~vi~~ag~~ 100 (255)
T PRK06841 90 IDILVNSAGVA 100 (255)
T ss_pred CCEEEECCCCC
Confidence 89999998764
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.026 Score=54.95 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=51.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceee-----cccchHHhh-------cCC
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIY-----KPLSEMLSC-------AAD 309 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~-----~~~~~~~~~-------l~~ 309 (513)
.+++++|.|+ |.+|+.+++.|...|. +|++++|++++...+.+.+.. ..+.+ ...+++... ...
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4678999998 9999999999999998 599999998877666554321 01111 111222222 245
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|+||.+.+..
T Consensus 84 id~lv~~ag~~ 94 (241)
T PRK07454 84 PDVLINNAGMA 94 (241)
T ss_pred CCEEEECCCcc
Confidence 89999988753
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.025 Score=58.14 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=31.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHH
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEER 282 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~r 282 (513)
-++|.|||+|.||..+|..+...|+. |++.+++++.
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~-V~l~D~~~~~ 38 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYD-VVLKDISPEA 38 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCc-eEEEeCCHHH
Confidence 47899999999999999999996674 9999999654
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.012 Score=52.00 Aligned_cols=92 Identities=22% Similarity=0.290 Sum_probs=55.6
Q ss_pred eEEEEc-ccHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhC----CcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 248 RMLVIG-AGKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELN----GVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 248 ~VlVIG-aG~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g----~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
+|.|+| +|.+|+.+++.|..+ .++-+.++.++......+...++ ..+..+.. ...+.+.++|+||.||+...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dvvf~a~~~~~ 78 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED--ADPEELSDVDVVFLALPHGA 78 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--TSGHHHTTESEEEE-SCHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee--cchhHhhcCCEEEecCchhH
Confidence 689999 699999999999986 34556677777633334555443 11112221 12233589999999998863
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEeccC
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDISV 350 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDlav 350 (513)
. .+....+. ..| ..+||++-
T Consensus 79 ~---~~~~~~~~-----~~g-~~ViD~s~ 98 (121)
T PF01118_consen 79 S---KELAPKLL-----KAG-IKVIDLSG 98 (121)
T ss_dssp H---HHHHHHHH-----HTT-SEEEESSS
T ss_pred H---HHHHHHHh-----hCC-cEEEeCCH
Confidence 3 22222221 123 58999973
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.018 Score=57.75 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=50.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee--ecccchHHhhc--------CCCcEE
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII--YKPLSEMLSCA--------ADADVV 313 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~--~~~~~~~~~~l--------~~aDVV 313 (513)
.+++|+|.|+ |.+|+.+++.|...|+ +|++++|+.++...+... +...+. +...+++...+ ...|+|
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~~-~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~l 80 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEAE-GLEAFQLDYAEPESIAALVAQVLELSGGRLDAL 80 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC-CceEEEccCCCHHHHHHHHHHHHHHcCCCccEE
Confidence 3678999999 9999999999999998 499999998887666542 211111 11112222211 357999
Q ss_pred EEcCCCC
Q 010322 314 FTSTASE 320 (513)
Q Consensus 314 I~AT~s~ 320 (513)
|++.+..
T Consensus 81 i~~Ag~~ 87 (277)
T PRK05993 81 FNNGAYG 87 (277)
T ss_pred EECCCcC
Confidence 9987654
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.026 Score=55.04 Aligned_cols=74 Identities=12% Similarity=0.226 Sum_probs=51.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeec-----ccchHHhh-------cCC
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK-----PLSEMLSC-------AAD 309 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~-----~~~~~~~~-------l~~ 309 (513)
.+++++|.|+ |.+|+.+++.|...|+. |++++|+.++...+...+.. ..+.+. ..+++.+. ...
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAK-VAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5789999998 99999999999999984 99999998877665544311 011111 11122222 246
Q ss_pred CcEEEEcCCC
Q 010322 310 ADVVFTSTAS 319 (513)
Q Consensus 310 aDVVI~AT~s 319 (513)
.|+||.+.+.
T Consensus 81 ~d~vi~~ag~ 90 (250)
T TIGR03206 81 VDVLVNNAGW 90 (250)
T ss_pred CCEEEECCCC
Confidence 8999999875
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.029 Score=55.21 Aligned_cols=78 Identities=18% Similarity=0.330 Sum_probs=53.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC--Ccceeec--cc---chHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN--GVEIIYK--PL---SEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g--~~~~~~~--~~---~~~~~~-------l 307 (513)
.+.+++++|+|+ |.+|..+++.|...|++.|++++|+.++...+...+. +..+.+. +. +++.+. .
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAF 82 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 467899999998 9999999999999999769999999876655544331 1111111 11 222222 2
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|+||.+.+..
T Consensus 83 g~id~li~~ag~~ 95 (260)
T PRK06198 83 GRLDALVNAAGLT 95 (260)
T ss_pred CCCCEEEECCCcC
Confidence 4689999998764
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.017 Score=57.91 Aligned_cols=67 Identities=25% Similarity=0.337 Sum_probs=48.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCC
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
.+|+|+|+ |.||+.+++.+... +++-+.++++++++.... ..+ .+..++++.+.+.++|+||++|+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-~~~-----~i~~~~dl~~ll~~~DvVid~t~p 70 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-GAL-----GVAITDDLEAVLADADVLIDFTTP 70 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-CCC-----CccccCCHHHhccCCCEEEECCCH
Confidence 47999998 99999999988864 566566788887665433 222 122346676767789999999843
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.03 Score=55.91 Aligned_cols=75 Identities=13% Similarity=0.217 Sum_probs=52.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-c-ee--ecccchHHh-------hcCCCcE
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-E-II--YKPLSEMLS-------CAADADV 312 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-~-~~--~~~~~~~~~-------~l~~aDV 312 (513)
.+++|+|.|+ |.+|+.+++.|...|.. |++.+|+.++...+.+.++.. . +. +...+++.+ .+...|+
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 80 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDR-VVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDI 80 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 3678999998 99999999999999974 999999988877766654321 0 11 111122222 1346899
Q ss_pred EEEcCCCC
Q 010322 313 VFTSTASE 320 (513)
Q Consensus 313 VI~AT~s~ 320 (513)
||.+.+..
T Consensus 81 vi~~ag~~ 88 (275)
T PRK08263 81 VVNNAGYG 88 (275)
T ss_pred EEECCCCc
Confidence 99998765
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.02 Score=56.31 Aligned_cols=73 Identities=16% Similarity=0.333 Sum_probs=50.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeec-----ccchHHhh-------cCCC
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK-----PLSEMLSC-------AADA 310 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~-----~~~~~~~~-------l~~a 310 (513)
|++++|.|+ |++|+.+++.|...|+ +|++++|+.++.+.+.+.+.. ..+.+. ..+++.+. ....
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 578999999 8999999999999999 599999998877666654421 111111 11122221 2467
Q ss_pred cEEEEcCCC
Q 010322 311 DVVFTSTAS 319 (513)
Q Consensus 311 DVVI~AT~s 319 (513)
|+||++.+.
T Consensus 80 d~lI~~ag~ 88 (252)
T PRK07677 80 DALINNAAG 88 (252)
T ss_pred cEEEECCCC
Confidence 999998864
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.034 Score=55.16 Aligned_cols=76 Identities=21% Similarity=0.212 Sum_probs=50.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcce--eecccchHHhhcCCCcEEEEcCCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEI--IYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~--~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
.+.+++++|.|+ |++|+.+++.|...|++ |++++|+...............+ .+...+++.+.+...|++|++.|.
T Consensus 11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG~ 89 (245)
T PRK12367 11 TWQGKRIGITGASGALGKALTKAFRAKGAK-VIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHGI 89 (245)
T ss_pred hhCCCEEEEEcCCcHHHHHHHHHHHHCCCE-EEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCcc
Confidence 457899999998 99999999999999984 88888876221111111111001 111223444556789999999875
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.03 Score=63.86 Aligned_cols=77 Identities=27% Similarity=0.370 Sum_probs=55.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-cee-----ecccchHHhh-------cC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-EII-----YKPLSEMLSC-------AA 308 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-~~~-----~~~~~~~~~~-------l~ 308 (513)
.+.|++|+|+|+ |++|+.+++.|...|+ +|++++|+.++...++..++.. .+. +...+++.+. ..
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 457899999996 9999999999999998 5999999998887777665420 111 1111222222 24
Q ss_pred CCcEEEEcCCCC
Q 010322 309 DADVVFTSTASE 320 (513)
Q Consensus 309 ~aDVVI~AT~s~ 320 (513)
+.|+||.+.+..
T Consensus 498 ~iDvvI~~AG~~ 509 (681)
T PRK08324 498 GVDIVVSNAGIA 509 (681)
T ss_pred CCCEEEECCCCC
Confidence 789999998853
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.054 Score=53.20 Aligned_cols=74 Identities=26% Similarity=0.375 Sum_probs=51.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeec--cc---chHHh-------hcCCC
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK--PL---SEMLS-------CAADA 310 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~--~~---~~~~~-------~l~~a 310 (513)
+++++|+|+ |.+|..+++.|...|+ +|++++|+.++...+..++.. ..+.+. +. +++.+ .....
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 578999998 9999999999999998 599999998877666665421 111111 11 12222 23468
Q ss_pred cEEEEcCCCC
Q 010322 311 DVVFTSTASE 320 (513)
Q Consensus 311 DVVI~AT~s~ 320 (513)
|+||.+.+..
T Consensus 81 d~vi~~ag~~ 90 (256)
T PRK08643 81 NVVVNNAGVA 90 (256)
T ss_pred CEEEECCCCC
Confidence 9999998653
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.057 Score=54.17 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=51.0
Q ss_pred CCCCCCeEEEEccc---HHHHHHHHHHHHcCCCeEEEEeCCHHH---HHHHHHHhCCcc-ee--ecccchHH-------h
Q 010322 242 SSHATARMLVIGAG---KMGKLVIKHLVAKGCTKMVVVNRSEER---VAAICEELNGVE-II--YKPLSEML-------S 305 (513)
Q Consensus 242 ~~l~g~~VlVIGaG---~mG~~ia~~L~~~G~~~V~v~nRs~~r---a~~la~~~g~~~-~~--~~~~~~~~-------~ 305 (513)
+.+.++.++|.|++ +||+.+++.|...|++ |++++|+... .+++.++++... +. +...++.. +
T Consensus 3 ~~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~-V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (271)
T PRK06505 3 GLMQGKRGLIMGVANDHSIAWGIAKQLAAQGAE-LAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEK 81 (271)
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCE-EEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHH
Confidence 34678999999996 8999999999999985 8888887532 334444444210 11 11111222 1
Q ss_pred hcCCCcEEEEcCCCC
Q 010322 306 CAADADVVFTSTASE 320 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~ 320 (513)
.....|++|++.+..
T Consensus 82 ~~g~iD~lVnnAG~~ 96 (271)
T PRK06505 82 KWGKLDFVVHAIGFS 96 (271)
T ss_pred HhCCCCEEEECCccC
Confidence 235789999998754
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.029 Score=56.29 Aligned_cols=67 Identities=19% Similarity=0.308 Sum_probs=48.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHcC---CCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhh-cCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKG---CTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSC-AADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G---~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~-l~~aDVVI~AT~s~ 320 (513)
.+|.|||+|.||+.++..+...+ ++-+.|++|++++.+.++... ....++.+. ....|+||+|.+..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~-------~~~~~l~~ll~~~~DlVVE~A~~~ 73 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRV-------ALLDGLPGLLAWRPDLVVEAAGQQ 73 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccC-------cccCCHHHHhhcCCCEEEECCCHH
Confidence 58999999999999999987642 444567778877777765531 133455554 46799999997764
|
|
| >cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.054 Score=54.60 Aligned_cols=155 Identities=14% Similarity=0.141 Sum_probs=85.8
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCcccccccccc-CCCchHHHH
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIA-AGAVSVSSA 230 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~-~~~~Sva~~ 230 (513)
...|||+++.+..++++++..-+|+........ ...+....++..-....+.++..+....... ..+...++.
T Consensus 58 ~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~------~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~ 131 (325)
T cd08271 58 HVPGVDGAGVVVAVGAKVTGWKVGDRVAYHASL------ARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQ 131 (325)
T ss_pred cccccceEEEEEEeCCCCCcCCCCCEEEeccCC------CCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHH
Confidence 457999999999999998888889877642100 0001111111111112223333222221111 122333444
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc-----hHH
Q 010322 231 AVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS-----EML 304 (513)
Q Consensus 231 Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~-----~~~ 304 (513)
++... . ....|.+|+|.|+ |.+|.+++..+...|+. |+++. +.++. .++..+|. ...+.... .+.
T Consensus 132 ~~~~~---~--~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~-v~~~~-~~~~~-~~~~~~g~-~~~~~~~~~~~~~~~~ 202 (325)
T cd08271 132 ALFKK---L--RIEAGRTILITGGAGGVGSFAVQLAKRAGLR-VITTC-SKRNF-EYVKSLGA-DHVIDYNDEDVCERIK 202 (325)
T ss_pred HHHHh---c--CCCCCCEEEEECCccHHHHHHHHHHHHcCCE-EEEEE-cHHHH-HHHHHcCC-cEEecCCCccHHHHHH
Confidence 43221 1 2347899999999 78999999999999986 66665 55555 45566663 21221111 122
Q ss_pred hhc--CCCcEEEEcCCCCc
Q 010322 305 SCA--ADADVVFTSTASEA 321 (513)
Q Consensus 305 ~~l--~~aDVVI~AT~s~~ 321 (513)
... .++|+++++++++.
T Consensus 203 ~~~~~~~~d~vi~~~~~~~ 221 (325)
T cd08271 203 EITGGRGVDAVLDTVGGET 221 (325)
T ss_pred HHcCCCCCcEEEECCCcHh
Confidence 222 36999999998753
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.024 Score=58.50 Aligned_cols=78 Identities=18% Similarity=0.265 Sum_probs=51.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhCCcceee------------------cccchHHh
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRSEERVAAICEELNGVEIIY------------------KPLSEMLS 305 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~-~G~~~V~v~nRs~~ra~~la~~~g~~~~~~------------------~~~~~~~~ 305 (513)
..-+|.+||+|.||+.++..... .|.+-+.+.+|+.+.+..-.++-+.....+ ...+|...
T Consensus 16 ~PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~ 95 (438)
T COG4091 16 KPIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAEL 95 (438)
T ss_pred CceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhh
Confidence 44689999999999999887776 488878889999887755444333211111 11122222
Q ss_pred h--cCCCcEEEEcCCCCcc
Q 010322 306 C--AADADVVFTSTASEAP 322 (513)
Q Consensus 306 ~--l~~aDVVI~AT~s~~~ 322 (513)
. ....|+||+|||.|..
T Consensus 96 i~~~~~IdvIIdATG~p~v 114 (438)
T COG4091 96 IIANDLIDVIIDATGVPEV 114 (438)
T ss_pred hhcCCcceEEEEcCCCcch
Confidence 2 2367999999999864
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.033 Score=54.98 Aligned_cols=75 Identities=11% Similarity=0.178 Sum_probs=49.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh---CCcceeec--cc---chHHhh-------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL---NGVEIIYK--PL---SEMLSC------- 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~---g~~~~~~~--~~---~~~~~~------- 306 (513)
.+.+++|+|.|+ |.+|..+++.|...|++ |+++.|+ .+.+++.+.+ +. .+.+. +. +++...
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTHG-TNWDETRRLIEKEGR-KVTFVQVDLTKPESAEKVVKEALEE 88 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC-cHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467899999999 99999999999999985 8888887 4443444332 21 11111 11 122222
Q ss_pred cCCCcEEEEcCCCC
Q 010322 307 AADADVVFTSTASE 320 (513)
Q Consensus 307 l~~aDVVI~AT~s~ 320 (513)
....|++|.+.+..
T Consensus 89 ~g~id~li~~ag~~ 102 (258)
T PRK06935 89 FGKIDILVNNAGTI 102 (258)
T ss_pred cCCCCEEEECCCCC
Confidence 23679999988753
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.029 Score=55.17 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=51.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC--Ccceeec--cc---chHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN--GVEIIYK--PL---SEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g--~~~~~~~--~~---~~~~~~-------l 307 (513)
++.+++++|+|+ |.+|+.+++.|...|++ |+++.|+..+. ++.+.+. +..+.+. +. +++... .
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKF 81 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 578999999998 89999999999999985 88888887765 4443331 1111111 11 222222 2
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|+||.+.+..
T Consensus 82 ~~id~vi~~ag~~ 94 (258)
T PRK08628 82 GRIDGLVNNAGVN 94 (258)
T ss_pred CCCCEEEECCccc
Confidence 4689999998753
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 513 | ||||
| 1gpj_A | 404 | Glutamyl-Trna Reductase From Methanopyrus Kandleri | 4e-26 |
| >pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyrus Kandleri Length = 404 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 513 | |||
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 1e-168 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 4e-48 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-06 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 1e-09 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 1e-08 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 1e-08 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 2e-07 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 5e-06 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 5e-06 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 1e-05 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 1e-05 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 2e-05 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 3e-05 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 4e-05 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 1e-04 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 1e-04 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 2e-04 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 2e-04 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 2e-04 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 2e-04 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 2e-04 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 2e-04 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 3e-04 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 3e-04 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 5e-04 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 5e-04 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 7e-04 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 9e-04 |
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 Length = 404 | Back alignment and structure |
|---|
Score = 479 bits (1236), Expect = e-168
Identities = 116/432 (26%), Positives = 202/432 (46%), Gaps = 30/432 (6%)
Query: 63 SSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVAL 122
+V +G++ A VE EK E A+ ++ + + +L T NR+E+Y
Sbjct: 2 EDLVSVGITHKEAEVEELEKARFESDE---AVRDIVESFGLSGSVLLQTSNRVEVYAS-- 56
Query: 123 SQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQ 182
G ++ E + + + ++ +A +HLF V++GL+S+++GE +IL Q
Sbjct: 57 ----GARDRAEELGD-------LIHDDAWVKRGSEAVRHLFRVASGLESMMVGEQEILRQ 105
Query: 183 VKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALMKLPES 242
VK+ + + +F+ AI++GKR R ET I+ GAVS+ SAAVELA +L
Sbjct: 106 VKKAYDRAARLGTLDEALKIVFRRAINLGKRAREETRISEGAVSIGSAAVELAERELGSL 165
Query: 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSE 302
T LV+GAG+MGK V K LV +G ++V NR+ ER + +L G + E
Sbjct: 166 HDKTV--LVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAV---RFDE 220
Query: 303 MLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVE 362
++ A +DVV ++TA+ P+ D V++ + L IDI+ PR+V V ++E
Sbjct: 221 LVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPI-LIIDIANPRDVEEGVENIE 279
Query: 363 TARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAE 422
V +DDL+ + N E R ++ + + +I EE + L+ + +
Sbjct: 280 DVEVRTIDDLRVIARENLERRRKEIPKVEKLIEEELSTVEEELEKLKERRLVADVAKSLH 339
Query: 423 RIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTLDETLE 482
I+ EL++ L ++ + + D + +L++ + + R
Sbjct: 340 EIKDRELERALRRLKTGDPEN---VLQDFAEAYTKRLINVLTSAIMELPDEYRR-----A 391
Query: 483 NMHALNRMFGLE 494
AL R L
Sbjct: 392 ASRALRRASELN 403
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} Length = 144 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 4e-48
Identities = 34/168 (20%), Positives = 70/168 (41%), Gaps = 26/168 (15%)
Query: 222 AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEE 281
AG VS+ S ++ + ++L++G G + + + K+ V R+ +
Sbjct: 3 AGKVSIPSIVYDIV------RKNGGNKILLVGNGMLASEIAPYFSYPQY-KVTVAGRNID 55
Query: 282 RVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGG 341
V A E+ Y ++++ S + DV+ T+T+S+ P+ + +
Sbjct: 56 HVRAFAEKYEY---EYVLINDIDSLIKNNDVIITATSSKTPIVEERSLMP---------- 102
Query: 342 LRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAME 389
+LFID+ P N+ V +D++ E+ N+ R K +
Sbjct: 103 GKLFIDLGNPPNIERGN------NVITLDEIYEISKKNEMLREEKINQ 144
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 5e-11
Identities = 72/511 (14%), Positives = 148/511 (28%), Gaps = 134/511 (26%)
Query: 89 EWPRAIGELCNLNHI-EEAAVLSTCNRMEIYVVALSQHRGVKEVTE--------WM---- 135
+ P++I ++HI +S R+ + + Q V++ E ++
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRL-FWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 136 ---SKTSGIPVAELCEHRFLLYN----------------KDATQHLFEVSAGLDSLV--- 173
+ + E R LYN Q L E+ + L+
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 174 LGEG-QILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAV 232
LG G +A V + I +++ ET + +
Sbjct: 159 LGSGKTWVA--LDVCLSYKVQCKMDFKI-----FWLNLKNCNSPETVLEM----LQKLLY 207
Query: 233 ELALMKLPESSHATARMLVIGAGKMGK-------------LVIKHL----VAK----GCT 271
++ S H++ L I + + LV+ ++ C
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC- 266
Query: 272 KMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLK--DH- 328
K+++ R + + L+ + L T ++ L LK D
Sbjct: 267 KILLTTRF----KQVTDFLSAATTTHISLDHHSM-------TLTPDEVKS-LLLKYLDCR 314
Query: 329 VQDLPPVEAAVGGLRLFIDISVPRNVGSCVADV----ETARVYNVDDLKEVVAAN----K 380
QDLP + + I + + D + + N D L ++ ++ +
Sbjct: 315 PQDLPR--EVLTTNPRRLSI-----IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 381 EDRLRKAMEAQAIITEESKQFAA-----WRDSLETVP--TIKKLRAYAERIRVAELDKCL 433
RK + ++ + W D +++ + KL Y + E
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY----SLVEKQPKE 423
Query: 434 SKMG-DDISKKTRRAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTLD-------------- 478
S + I + + +++ +++ + + SD
Sbjct: 424 STISIPSIYLELKVKLENEYA--LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 479 ---ETLENMHALNRMFGLETDTSLFEQKVRA 506
E E M +F D EQK+R
Sbjct: 482 KNIEHPERMTLFRMVF---LDFRFLEQKIRH 509
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 2e-06
Identities = 74/553 (13%), Positives = 153/553 (27%), Gaps = 166/553 (30%)
Query: 8 LGQQIRVACK-PNRNERNLQQSR------------RGVVRCEVAVDPSSA--SALEQLKA 52
L I+ + P+ R + R V R + P AL +L+
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ----PYLKLRQALLELR- 148
Query: 53 SAPDRYTKERSSIVVIGL-----SVHTAPV--EMREKLAIP-EAEWPRAIGELCNLNHIE 104
P + +++ G+ + V + + + + W LN
Sbjct: 149 --PAKN------VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW---------LN--- 188
Query: 105 EAAVLSTCNRMEIYVVALSQ--HRGVKEVTEWMSKTSGIPVAELCEHRFLLYN--KDATQ 160
L CN E + L + ++ T +S I L + + +
Sbjct: 189 ----LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK---------LRIHSIQAELR 235
Query: 161 HLFEVSAGLDSLVLGEGQILAQV--KQVVKVGQGVVGFG---------RNISGLFKHAIS 209
L + + L+ +L V + F R + +
Sbjct: 236 RLLKSKPYENCLL-----VLLNVQNAKAWNA------FNLSCKILLTTRFKQVTDFLSAA 284
Query: 210 VGKRVRTETNIAAG-----AVSVSSAAVELALMKLPESSHATARMLV--IGAGKMGKLVI 262
+ + + + S+ ++ LP T + I +
Sbjct: 285 TTTHISLD-HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE-----SIR 338
Query: 263 KHLVAKGCT----KMVVVNRSEERVAAICEELNGVEI--IYKPLS-------------EM 303
L T K V ++ + + L E ++ LS +
Sbjct: 339 DGL----ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 304 LSCAADADVV--FTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVP-RNVG----S 356
+ V + + L K P E+ + +++++ V N S
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQ------PKESTISIPSIYLELKVKLENEYALHRS 448
Query: 357 CVADVETARVYNVDD-----------------LKEVVAANKEDRLRKA------MEAQAI 393
V + ++ DD LK + + R +E Q I
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-QKI 507
Query: 394 ITEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSR 453
+ + AW S + T+++L+ Y I + D ++ + I + ++L
Sbjct: 508 RHDST----AWNASGSILNTLQQLKFYKPYIC--DNDPKYERLVNAILDFLPKIEENLIC 561
Query: 454 GIMNKLLHGPMQH 466
LL +
Sbjct: 562 SKYTDLLRIALMA 574
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 1e-09
Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 16/155 (10%)
Query: 224 AVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERV 283
++ + + +A+ + H A + V+G G++G V + A G K+ V R + +
Sbjct: 134 SIPTAEGTIMMAIQHTDFTIHG-ANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLL 191
Query: 284 AAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR 343
A I E G+E +S+ D DV A + + + ++P
Sbjct: 192 ARIAEM--GMEPF--HISKAAQELRDVDVCI--NTIPALVVTANVLAEMPS-HT------ 238
Query: 344 LFIDI-SVPRNVGSCVADVETARVYNVDDLKEVVA 377
ID+ S P A+ + V L +VA
Sbjct: 239 FVIDLASKPGGTDFRYAEKRGIKALLVPGLPGIVA 273
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 15/112 (13%)
Query: 221 AAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRS 279
A A+ A L P SS + ++GAG + ++ + NR+
Sbjct: 121 AVSAI----ATKFLK----PPSSE---VLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRT 169
Query: 280 EERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQD 331
+E + + G + + E A ADV+ T T + P+ + V+
Sbjct: 170 KENAEKFADTVQGEVRVCSSVQE---AVAGADVIITVTLATEPILFGEWVKP 218
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A Length = 322 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 1e-08
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 14/112 (12%)
Query: 221 AAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRS 279
AAG + AA LA ++S IG G ++ L ++ +
Sbjct: 111 AAGGI----AAKYLA----RKNSS---VFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVR 159
Query: 280 EERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQD 331
E+ I A+ DV+ T+T S P+ + V++
Sbjct: 160 EKAAKKFVSYCEDRGISASVQPA--EEASRCDVLVTTTPSRKPVVKAEWVEE 209
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} Length = 297 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 21/134 (15%)
Query: 235 ALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVE 294
AL + + R+LVIGAG + + L++ ++ + NR+ E+ + E +
Sbjct: 130 ALEEEMNITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERR 189
Query: 295 IIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNV 354
Y L+E + A+ D++ +T + + V+ P + + R
Sbjct: 190 SAYFSLAEAETRLAEYDIIINTT----SVGMHPRVEVQP------------LSLERLRP- 232
Query: 355 GSCVADVETARVYN 368
G V+D+ +YN
Sbjct: 233 GVIVSDI----IYN 242
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} Length = 313 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 5e-06
Identities = 28/114 (24%), Positives = 41/114 (35%), Gaps = 18/114 (15%)
Query: 221 AAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRS 279
A + AA LA S + + GAG G L A ++V +
Sbjct: 107 ACTVL----AAGALA----RPRSS---VLGLFGAGTQGAEHAAQLSARFALEAILVHDPY 155
Query: 280 --EERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQD 331
E + I GV ++ AA AD+V T+T S PLF ++
Sbjct: 156 ASPEILERIGRRC-GVPARMAAPAD---IAAQADIVVTATRSTTPLFAGQALRA 205
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* Length = 523 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 5e-06
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEML 304
A+ ++VIGAG GK + KG K+V+ NR+ ER + E + G + L
Sbjct: 363 ASKTVVVIGAGGAGKALAYGAKEKGA-KVVIANRTYERALELAEAIGGKALSLTDLDNYH 421
Query: 305 SCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348
D V+ +T + ++ +V++ P + A+ L D
Sbjct: 422 --PEDGMVLANTT----SMGMQPNVEETPISKDALKHYALVFDA 459
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* Length = 350 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 19/117 (16%)
Query: 221 AAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIK-HLVAKGCTKMVVVNRS 279
A + AA LA ++ +M +IG G + G ++V +
Sbjct: 115 ATSLM----AAQALA----RPNAR---KMALIGNGAQSEFQALAFHKHLGIEEIVAYDTD 163
Query: 280 EERVAAICEELN---GVEIIYKPLSEMLSCAADADVVFTSTA--SEAPLFLKDHVQD 331
A + L G+ I S + D++ T TA + A + D ++
Sbjct: 164 PLATAKLIANLKEYSGLTIR--RASSVAEAVKGVDIITTVTADKAYATIITPDMLEP 218
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Length = 300 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 21/146 (14%), Positives = 52/146 (35%), Gaps = 19/146 (13%)
Query: 224 AVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERV 283
++ + LA+ + H +++ V+G G+ G + + A G + V RS +
Sbjct: 136 SIPTVEGTIMLAIQHTDYTIHG-SQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHL 193
Query: 284 AAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR 343
A + + ++ E+ D D+ + + + + + P +
Sbjct: 194 A----RITEMGLVPFHTDELKEHVKDIDICI--NTIPSMILNQTVLSSMTP--KTL---- 241
Query: 344 LFIDISVPRNVGSCVADVETARVYNV 369
+D++ G D + A +
Sbjct: 242 -ILDLASRP--GGT--DFKYAEKQGI 262
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* Length = 263 | Back alignment and structure |
|---|
Score = 45.5 bits (109), Expect = 2e-05
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 251 VIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADA 310
+G G M V LV +G ++ + NR E+ + +EL GVE S L
Sbjct: 5 FLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL-GVET-----SATLPELHSD 58
Query: 311 DVVF 314
DV+
Sbjct: 59 DVLI 62
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 3e-05
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCA 307
+++IGAG + + K L KG + V +R+EE + +++ + +++
Sbjct: 12 PIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEA-----EYTTDLAEVN 66
Query: 308 ADADVVFTSTASEA 321
A + S A
Sbjct: 67 PYAKLYIVSLKDSA 80
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} Length = 272 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 4e-05
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSC 306
R+L++GAG + + + G +++V+ NR + A+ EL+ + +
Sbjct: 121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALE-- 178
Query: 307 AADADVVFTSTAS 319
D+V +T++
Sbjct: 179 GQSFDIVVNATSA 191
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A Length = 283 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG----VEIIYKPLSE 302
++ +GAG +G V LV G K+ V + R A+ + +N ++
Sbjct: 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARG 187
Query: 303 MLSCAADADVV 313
+ A AD V
Sbjct: 188 IEDVIAAADGV 198
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* Length = 277 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSC 306
A +L++GAG K + L + V NR+ R +N + + L
Sbjct: 118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLS--HAESHL-- 173
Query: 307 AADADVV 313
+ D++
Sbjct: 174 -DEFDII 179
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} Length = 467 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-04
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 241 ESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK 298
E H +L++G+G + + VI L A + V R+ A+ + + +
Sbjct: 18 EGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVT 77
Query: 299 PLSEMLSCAADADVV 313
S + AD DVV
Sbjct: 78 DDSALDKVLADNDVV 92
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A Length = 450 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 2e-04
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIY---KPLS 301
AT +L++G+G + + + L G K+ V R+ E + + I +
Sbjct: 2 ATKSVLMLGSGFVTRPTLDVLTDSG-IKVTVACRTLESAKKLSAGVQHSTPISLDVNDDA 60
Query: 302 EMLSCAADADVV 313
+ + A D+V
Sbjct: 61 ALDAEVAKHDLV 72
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} Length = 253 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 241 ESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL 300
E ++V+GAG + VI L+ G + VVNR+ ER A+ + L
Sbjct: 103 EGVEVKEPVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIF-----SL 157
Query: 301 SEMLSCAADADVV 313
++ A +
Sbjct: 158 DQLDEVVKKAKSL 170
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 2e-04
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS 301
S+ + V+GAGK+G+++ L + V + +A + GV
Sbjct: 1 SNAMRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRM--GVATKQVDAK 58
Query: 302 ---EMLSCAADADVVFT 315
+ D V +
Sbjct: 59 DEAGLAKALGGFDAVIS 75
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* Length = 281 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG-VEIIYKPLSEMLS 305
A +L+IGAG + V+K L+ + + V NR+ + + E + E+ + ++
Sbjct: 127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLK- 185
Query: 306 CAADADVVFTSTASEAPLFLKDHVQDLPP 334
DV+ ST L + + P
Sbjct: 186 --QSYDVIINST----SASLDGELPAIDP 208
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} Length = 280 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 251 VIGAGKMGKLVIKHLVAKGC--TKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA 308
IG G M + ++ L+A G ++ V NRS +++ E+ GV + A
Sbjct: 8 FIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKC-GVHT----TQDNRQGAL 62
Query: 309 DADVVF 314
+ADVV
Sbjct: 63 NADVVV 68
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} Length = 282 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 28/121 (23%)
Query: 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCA 307
+V+G+G + V+++L + VV R+ E+ + I E + Y LS +
Sbjct: 124 ICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVIS--YDELSNL---- 177
Query: 308 ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVY 367
DV+ T P + + P +D V S D+ +Y
Sbjct: 178 -KGDVIINCT----PKGMYPKEGESP------------VDKEVVAK-FSSAVDL----IY 215
Query: 368 N 368
N
Sbjct: 216 N 216
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} Length = 247 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 3e-04
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 251 VIGAGKMGKLVIKHLVAKGCTK---MVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCA 307
IG G MG +I ++ K ++ + + + E+ G+ ++ A
Sbjct: 7 FIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY-GL----TTTTDNNEVA 61
Query: 308 ADADVVF 314
+AD++
Sbjct: 62 KNADILI 68
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Length = 259 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 251 VIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADA 310
+IG GKM +IK L ++++ S ER I E+L +
Sbjct: 8 IIGVGKMASAIIKGLKQTP-HELIISGSSLERSKEIAEQL-AL----PYAMSHQDLIDQV 61
Query: 311 DVVF 314
D+V
Sbjct: 62 DLVI 65
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 Length = 271 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEI 295
A+++V G+G M K V+ G K+ + R+ + + I
Sbjct: 120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYI 168
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 220 IAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279
+ V + + + M + ES ++ +G G MG + + L G + V NR+
Sbjct: 6 HHSSGVDLGTENLYFQSMTV-ESDPYARKITFLGTGSMGLPMARRLCEAGYA-LQVWNRT 63
Query: 280 EERVAAICEELNGVEIIYKPLSEMLSCAADADVVFT 315
R A++ G I + + A DAD+V +
Sbjct: 64 PARAASLAAL--GATIHEQA----RAAARDADIVVS 93
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 9e-04
Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 17/124 (13%)
Query: 229 SAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE 288
S+ V+L L S+A ++ IG G+ + L G M + +
Sbjct: 8 SSGVDLGTENLYFQSNAM-KLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRA 66
Query: 289 ELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR---LF 345
E GV A + DV+F+ ++ L + A L L+
Sbjct: 67 EELGVSCKASV----AEVAGECDVIFSLVTAQ---------AALEVAQQAGPHLCEGALY 113
Query: 346 IDIS 349
D +
Sbjct: 114 ADFT 117
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 513 | |||
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 100.0 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 99.8 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 99.76 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 99.72 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 99.69 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 99.69 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 99.68 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 99.67 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 99.65 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 99.65 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 99.63 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 99.62 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 99.59 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 99.58 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 99.58 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 99.55 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 99.52 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 99.49 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 99.38 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 99.37 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 99.31 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 99.3 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 99.18 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 99.15 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 99.14 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 99.12 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 99.11 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 99.1 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 99.07 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 99.06 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 99.02 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 99.01 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 99.0 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 98.98 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 98.96 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 98.93 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 98.92 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 98.92 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 98.91 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 98.91 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 98.9 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 98.89 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.89 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 98.89 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 98.89 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 98.88 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 98.87 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.87 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 98.87 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.86 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 98.86 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 98.86 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 98.86 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 98.86 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 98.85 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.85 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 98.85 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 98.84 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 98.83 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 98.83 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.83 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 98.83 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 98.8 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 98.78 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 98.77 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.75 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.72 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.72 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 98.71 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 98.71 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.71 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 98.71 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 98.69 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 98.69 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.67 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 98.67 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 98.66 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 98.62 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 98.61 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 98.61 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 98.58 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 98.57 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 98.56 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 98.55 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 98.55 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 98.55 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 98.55 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 98.54 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 98.52 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 98.51 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 98.5 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.49 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.49 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 98.48 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 98.47 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 98.45 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 98.45 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 98.42 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 98.41 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 98.41 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 98.4 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 98.39 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 98.36 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 98.34 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 98.33 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 98.32 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 98.32 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 98.29 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.28 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 98.28 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 98.28 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.23 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 98.22 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 98.17 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 98.15 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 98.13 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 98.13 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.13 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 98.13 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 98.11 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 98.11 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 98.09 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 98.09 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 98.07 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 98.04 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 98.03 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 98.02 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 98.02 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 98.0 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 97.99 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 97.99 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 97.99 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 97.99 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 97.98 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 97.98 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 97.98 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 97.97 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 97.97 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.97 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 97.97 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.97 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 97.97 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 97.96 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 97.95 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 97.95 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 97.95 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 97.94 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 97.94 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 97.93 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 97.92 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.91 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 97.91 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 97.9 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.9 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.89 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 97.89 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 97.89 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 97.89 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 97.89 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 97.88 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 97.88 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.88 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.88 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 97.87 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 97.87 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.86 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 97.86 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 97.85 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 97.85 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 97.84 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 97.84 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 97.84 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 97.81 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 97.8 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.78 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 97.78 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.77 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.76 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 97.76 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 97.75 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 97.75 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 97.74 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 97.74 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 97.74 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 97.74 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.73 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 97.72 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.72 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 97.71 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 97.7 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 97.7 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 97.7 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.69 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.69 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 97.67 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 97.66 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.65 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 97.64 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 97.64 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 97.62 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.61 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 97.61 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 97.59 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 97.59 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 97.59 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 97.58 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 97.58 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.58 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 97.58 | |
| 3nv9_A | 487 | Malic enzyme; rossmann fold, oxidoreductase; 2.25A | 97.57 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 97.56 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 97.56 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 97.55 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.52 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 97.52 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 97.51 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 97.51 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 97.51 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 97.5 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 97.48 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 97.47 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 97.46 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 97.46 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.46 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.45 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 97.45 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 97.44 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 97.44 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 97.43 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 97.4 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.4 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 97.38 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 97.37 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 97.37 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 97.37 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 97.31 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.3 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 97.29 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.28 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.28 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 97.27 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 97.27 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 97.25 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 97.25 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 97.24 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.24 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.24 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 97.24 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 97.23 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 97.22 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 97.21 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 97.19 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 97.19 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 97.19 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 97.19 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.18 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 97.18 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 97.18 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 97.17 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 97.17 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 97.17 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.17 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 97.17 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.16 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 97.16 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.15 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.15 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 97.15 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 97.14 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.14 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 96.21 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.13 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.12 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 97.12 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.12 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 97.11 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 97.11 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 97.11 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 97.1 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 97.1 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 97.1 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.1 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 97.1 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 97.09 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 97.08 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 97.08 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 97.08 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 97.08 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 97.07 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.07 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 97.06 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 97.05 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.05 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 97.05 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.04 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 97.04 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 97.04 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 97.03 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 97.03 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 97.03 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 97.03 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.02 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 97.02 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 97.02 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 97.01 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 97.01 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 97.01 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.0 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 97.0 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 97.0 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 96.98 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 96.98 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 96.97 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 96.97 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 96.97 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 96.96 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 96.95 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 96.95 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 96.95 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 96.94 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 96.93 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 96.93 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 96.93 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 96.93 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 96.93 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 96.93 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 96.92 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 96.92 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 96.92 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 96.92 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 96.92 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 96.91 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 96.91 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 96.91 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 96.91 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 96.91 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.9 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 96.89 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 96.89 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 96.89 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 96.89 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 96.89 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 96.89 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 96.89 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.88 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 96.88 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 96.87 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 96.86 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 96.86 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 96.86 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 96.86 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 96.86 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.86 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 96.86 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 96.85 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 96.85 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 96.84 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 96.84 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 96.83 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 96.83 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 96.83 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.82 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 96.82 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 96.82 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 96.82 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 96.81 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 96.81 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 96.81 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 96.8 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 96.8 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 96.79 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 96.79 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 96.79 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 96.79 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 96.78 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 96.78 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 96.77 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 96.77 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 96.77 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 96.77 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 96.76 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 96.76 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 96.75 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 96.75 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.75 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.75 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 96.74 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 96.73 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 96.73 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 96.73 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 96.72 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 96.72 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 96.72 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 96.71 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 96.71 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 96.71 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 96.71 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 96.71 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 96.71 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 96.7 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 96.7 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 96.69 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 96.69 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 96.68 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 96.68 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 96.68 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 96.67 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 96.67 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 96.67 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 96.67 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 96.67 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 96.66 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 96.66 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 96.66 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 96.65 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 96.65 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 96.64 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 96.64 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 96.64 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 96.63 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 96.63 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 96.63 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 96.63 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 96.62 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 96.62 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 96.62 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 96.61 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 96.6 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.59 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 96.58 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 96.57 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 96.57 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 96.56 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 96.55 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 96.55 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 96.54 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 96.53 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 96.53 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 96.52 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 96.51 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 96.51 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 96.51 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 96.5 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 96.5 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 96.5 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 96.5 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 96.5 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 96.49 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 96.49 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 96.49 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 96.48 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.48 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 96.47 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 96.46 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 96.46 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 96.44 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 96.44 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 96.44 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 96.43 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 96.41 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 96.4 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 96.4 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 96.4 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 96.39 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 96.39 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 96.39 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 96.38 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 96.37 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 96.37 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 96.35 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 96.35 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 96.35 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 96.35 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 96.33 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 96.33 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 96.32 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 96.31 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.3 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 96.3 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 96.3 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 96.29 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 96.29 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.29 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 96.28 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 96.27 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 96.26 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 96.26 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 96.26 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 96.24 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 96.23 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 96.23 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 96.22 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 96.22 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 96.22 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.2 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 96.2 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 96.17 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 96.16 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 96.16 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 96.16 |
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-70 Score=576.99 Aligned_cols=401 Identities=29% Similarity=0.426 Sum_probs=351.7
Q ss_pred ce-EEEEEeecCCCCHHHHhhhcCCCCChHHHHHHHhccCCCcceEEeeecCeeEEEEEeccccccHHHHHHHHHHhcCC
Q 010322 63 SS-IVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGI 141 (513)
Q Consensus 63 ~~-i~~igi~hk~apv~~RE~~a~~~~~~~~~l~~l~~~~~i~e~viLsTCNR~EiY~~~~~~~~~~~~~~~~l~~~~~~ 141 (513)
|+ |+++|+||||||+++||||+|++++ ++..|+..+++.|++|||||||+|||+..+. + +..++.++.+
T Consensus 1 m~~~~~~g~~h~~a~v~~re~~~~~~~~---~~~~l~~~~~~~e~~ilsTCnR~E~y~~~~~-~-----~~~~~~~~~~- 70 (404)
T 1gpj_A 1 MEDLVSVGITHKEAEVEELEKARFESDE---AVRDIVESFGLSGSVLLQTSNRVEVYASGAR-D-----RAEELGDLIH- 70 (404)
T ss_dssp CTTEEEEEEETTTSCHHHHHHHSCCCTT---HHHHHHHHHTCSEEEEEEETTEEEEEEESCT-T-----CHHHHHHTTC-
T ss_pred CccEEEEEEECCcCCHHHHHHHhCCHHH---HHHHHhcCCCCccEEEEecCCeEEEEEecch-h-----HHHHHHHHHh-
Confidence 66 9999999999999999999999876 7788888889999999999999999987642 2 4455555543
Q ss_pred ChhhhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCcccccccccc
Q 010322 142 PVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIA 221 (513)
Q Consensus 142 ~~~~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~ 221 (513)
+++|.+.|+++++|+|+|++|+||+++||+||++|++.+|..|...|.++.+++..|+.++.+++++++++.++
T Consensus 71 ------~~~~~~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~~~~~~~~~~~~a~~~~k~v~~~~~~~ 144 (404)
T 1gpj_A 71 ------DDAWVKRGSEAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGTLDEALKIVFRRAINLGKRAREETRIS 144 (404)
T ss_dssp ------TTCEEEEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred ------hheeeecCchHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhccCcchhhhc
Confidence 27899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc
Q 010322 222 AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS 301 (513)
Q Consensus 222 ~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~ 301 (513)
.+++|++++|+.++...+ +++.|++|+|||+|+||+++++.|...|+.+|+++||++++++++++++|. .+.+++
T Consensus 145 ~~~~s~a~~av~~a~~~~--~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~---~~~~~~ 219 (404)
T 1gpj_A 145 EGAVSIGSAAVELAEREL--GSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG---EAVRFD 219 (404)
T ss_dssp CSCCSHHHHHHHHHHHHH--SCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC---EECCGG
T ss_pred CCCccHHHHHHHHHHHHh--ccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC---ceecHH
Confidence 999999999998876444 357899999999999999999999999998899999999998889999875 334556
Q ss_pred hHHhhcCCCcEEEEcCCCCccCCChhhhhc-CCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEccCCHHHHHHHHH
Q 010322 302 EMLSCAADADVVFTSTASEAPLFLKDHVQD-LPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANK 380 (513)
Q Consensus 302 ~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~-~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~iDdl~~v~~~~~ 380 (513)
++.+.+.++|+||+||+++.++++.+.+.. +++. +++++.+++|++.|++++|.+.+++|+++|++||+..++..+.
T Consensus 220 ~l~~~l~~aDvVi~at~~~~~~~~~~~l~~~~lk~--r~~~~~v~vdia~P~~i~~~l~~l~~v~l~d~d~l~~~~~~~~ 297 (404)
T 1gpj_A 220 ELVDHLARSDVVVSATAAPHPVIHVDDVREALRKR--DRRSPILIIDIANPRDVEEGVENIEDVEVRTIDDLRVIARENL 297 (404)
T ss_dssp GHHHHHHTCSEEEECCSSSSCCBCHHHHHHHHHHC--SSCCCEEEEECCSSCSBCTTGGGSTTEEEEEHHHHHHHHHHHH
T ss_pred hHHHHhcCCCEEEEccCCCCceecHHHHHHHHHhc--cCCCCEEEEEccCCCCCCccccccCCeEEEeHhhHHHHHHHHH
Confidence 777777899999999999999887777654 2110 1357799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHh
Q 010322 381 EDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLL 460 (513)
Q Consensus 381 ~~R~~~~~~ae~iI~e~~~~f~~w~~~~~~~p~I~~lr~~~e~i~~~el~~~~~kl~~~~~~~~~~~i~~~~~~~~~k~l 460 (513)
+.|...+.++++||.+++..|..|++.....|+|+.+++++++++++|++|++++|++ +++++++++++++++||||
T Consensus 298 ~~r~~~~~~~~~li~q~~~~f~~w~~~~~~~~~I~~lr~~~~~~~~~e~~~~~~~l~~---~~~~~~~~~~~~~~~~k~l 374 (404)
T 1gpj_A 298 ERRRKEIPKVEKLIEEELSTVEEELEKLKERRLVADVAKSLHEIKDRELERALRRLKT---GDPENVLQDFAEAYTKRLI 374 (404)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC--------CCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999974 5678999999999999999
Q ss_pred hhHHHHHhhcCCCCCchhhhHHHHHHHHHHhCCC
Q 010322 461 HGPMQHLRCDGSDSRTLDETLENMHALNRMFGLE 494 (513)
Q Consensus 461 h~P~~~lk~~~~~~~~~~~~~~~~~~~~~lf~l~ 494 (513)
|.|+.+||+.+.++. .+++++++++|.|+
T Consensus 375 ~~p~~~l~~~~~~~~-----~~~~~~~~~~~~~~ 403 (404)
T 1gpj_A 375 NVLTSAIMELPDEYR-----RAASRALRRASELN 403 (404)
T ss_dssp HHHHHHHHSSCTTTT-----THHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhcCh-----HHHHHHHHHHHhhc
Confidence 999999997644332 35899999999764
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.7e-20 Score=164.40 Aligned_cols=141 Identities=23% Similarity=0.363 Sum_probs=118.5
Q ss_pred cCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc
Q 010322 221 AAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL 300 (513)
Q Consensus 221 ~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~ 300 (513)
+.+|+|++++|++++... .+++|+|||+|.||+.+++.|...|++ |++++|++++++.++++++. .+..+
T Consensus 2 ~~~~~sv~~~a~~~~~~~------~~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r~~~~~~~~a~~~~~---~~~~~ 71 (144)
T 3oj0_A 2 NAGKVSIPSIVYDIVRKN------GGNKILLVGNGMLASEIAPYFSYPQYK-VTVAGRNIDHVRAFAEKYEY---EYVLI 71 (144)
T ss_dssp --CCCSHHHHHHHHHHHH------CCCEEEEECCSHHHHHHGGGCCTTTCE-EEEEESCHHHHHHHHHHHTC---EEEEC
T ss_pred CCCcccHHHHHHHHHHhc------cCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCCHHHHHHHHHHhCC---ceEee
Confidence 357999999999988654 389999999999999999999999987 99999999999999999873 33455
Q ss_pred chHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEccCCHHHHHHHHH
Q 010322 301 SEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANK 380 (513)
Q Consensus 301 ~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~iDdl~~v~~~~~ 380 (513)
+++.+.+.++|+||+||+++++++..+.+. ...+++|+++|++++| ++++|++||+..+++.|.
T Consensus 72 ~~~~~~~~~~Divi~at~~~~~~~~~~~l~----------~g~~vid~~~p~~~~~------~~~~~~~d~l~~~~~~~~ 135 (144)
T 3oj0_A 72 NDIDSLIKNNDVIITATSSKTPIVEERSLM----------PGKLFIDLGNPPNIER------GNNVITLDEIYEISKKNE 135 (144)
T ss_dssp SCHHHHHHTCSEEEECSCCSSCSBCGGGCC----------TTCEEEECCSSCSBCC------STTSEEHHHHHHHHHHHH
T ss_pred cCHHHHhcCCCEEEEeCCCCCcEeeHHHcC----------CCCEEEEccCCccCCC------CCEEEeHHHHHHHHHHHH
Confidence 677777889999999999999987765542 2368899999999988 678899999999999999
Q ss_pred HHHHHHH
Q 010322 381 EDRLRKA 387 (513)
Q Consensus 381 ~~R~~~~ 387 (513)
+.|.+.+
T Consensus 136 ~~r~~~~ 142 (144)
T 3oj0_A 136 MLREEKI 142 (144)
T ss_dssp HHTTCC-
T ss_pred HHHHHhh
Confidence 8887543
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-18 Score=171.98 Aligned_cols=252 Identities=15% Similarity=0.198 Sum_probs=162.0
Q ss_pred eecCeeEEEEEeccccccHHHHHHHHHHhcCCChhhhhhHHHHhcCCceeeeeeee----------------ccCCCCcc
Q 010322 110 STCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEV----------------SAGLDSLV 173 (513)
Q Consensus 110 sTCNR~EiY~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~eav~hlf~V----------------~sGldS~v 173 (513)
.-|+||++|....++-. +.. ...+++.+|...|.++.+..|+| ..|+...+
T Consensus 18 ~~~~~t~~~~viG~pi~------------hS~-Sp~~hn~~~~~~Gl~~~Y~~~~~~~~~l~~~v~~l~~~~~~G~nVTi 84 (297)
T 2egg_A 18 FQGHMEKVYGLIGFPVE------------HSL-SPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRALGIAGVNVTI 84 (297)
T ss_dssp --CCCCEEEEEEESSCT------------TCS-HHHHHHHHHHHTTCCEEEEEEECCTTCHHHHHHHHHHHTCCEEEECT
T ss_pred ecCCceeEEEEECCCcc------------ccc-CHHHHHHHHHHcCcCcEEEEEEcCHHHHHHHHHHHhhCCCCeEEECC
Confidence 45889999876533210 011 12345566666666666666665 35777788
Q ss_pred cCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEc
Q 010322 174 LGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIG 253 (513)
Q Consensus 174 vGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIG 253 (513)
+++.+|+.++......|+..|.++..+. ..++. ++.++...|+.. .+.... ..++.+++|+|+|
T Consensus 85 P~K~~i~~~ld~~~~~A~~iGavNti~~-------~~g~l------~g~nTd~~G~~~-~l~~~~--~~~l~~~~vlVlG 148 (297)
T 2egg_A 85 PHKLAVIPFLDEVDEHARRIGAVNTIIN-------NDGRL------VGYNTDGLGYVQ-ALEEEM--NITLDGKRILVIG 148 (297)
T ss_dssp TCTTTTGGGCSEECHHHHHHTCCCEEEE-------ETTEE------EEECCHHHHHHH-HHHHHT--TCCCTTCEEEEEC
T ss_pred cCHHHHHHHHHHHhHHHHHhCCCCeEEC-------cCCeE------eeccCCHHHHHH-HHHHhC--CCCCCCCEEEEEC
Confidence 8888888888887888888887776553 22333 445555556543 222211 0157899999999
Q ss_pred ccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccC------CChh
Q 010322 254 AGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPL------FLKD 327 (513)
Q Consensus 254 aG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~v------i~~~ 327 (513)
+|+||+.++..|...|+.+|+|+||+.++++++++.++.....+.+++++.+.+.++|+||+||+.++.- +..+
T Consensus 149 aGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~~~~~~~~i~~~ 228 (297)
T 2egg_A 149 AGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLSLE 228 (297)
T ss_dssp CSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCSSCCSCCSSCCT
T ss_pred cHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCCCCCCCCCCCHH
Confidence 9999999999999999988999999999999999988631002334456667788999999999998641 1111
Q ss_pred hhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010322 328 HVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDS 407 (513)
Q Consensus 328 ~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~iDdl~~v~~~~~~~R~~~~~~ae~iI~e~~~~f~~w~~~ 407 (513)
.+ ....+++|+..- +.... +++...+.....+.+.+|++.|.+.+|+.|++.
T Consensus 229 ~l----------~~~~~v~D~~y~-----------------P~~T~-ll~~A~~~G~~~v~Gl~MLv~Qa~~af~~w~g~ 280 (297)
T 2egg_A 229 RL----------RPGVIVSDIIYN-----------------PLETK-WLKEAKARGARVQNGVGMLVYQGALAFEKWTGQ 280 (297)
T ss_dssp TC----------CTTCEEEECCCS-----------------SSSCH-HHHHHHHTTCEEECSHHHHHHHHHHHHHHHHSC
T ss_pred Hc----------CCCCEEEEcCCC-----------------CCCCH-HHHHHHHCcCEEECCHHHHHHHHHHHHHHHhCC
Confidence 11 122577787641 11111 122222111223456889999999999999987
Q ss_pred cCcHHHHHHHHHHH
Q 010322 408 LETVPTIKKLRAYA 421 (513)
Q Consensus 408 ~~~~p~I~~lr~~~ 421 (513)
. |.+..+++.+
T Consensus 281 ~---~~~~~~~~~~ 291 (297)
T 2egg_A 281 W---PDVNRMKQLV 291 (297)
T ss_dssp C---CCHHHHHHHH
T ss_pred C---CCHHHHHHHH
Confidence 3 4445566544
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-17 Score=163.77 Aligned_cols=227 Identities=15% Similarity=0.136 Sum_probs=157.3
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCccc------------chhhHHHHHHHhhCc
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFG------------RNISGLFKHAISVGK 212 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g------------~~L~~lf~~ai~v~k 212 (513)
.+++.+|...|.++.|..|+|.. .++..+++..+..++.| ++++.+...|-.++.
T Consensus 19 ~~hn~~f~~~gl~~~Y~~~~v~~-------------~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~~A~~iGA 85 (272)
T 3pwz_A 19 LIHGLFAQASNQQLEYGAIEGSL-------------DDFEAQVLQFRSEGGKGMNITAPFKLRAFELADRRSERAQLARA 85 (272)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCT-------------TTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHHHTC
T ss_pred HHHHHHHHHcCCCcEEEEEEcCH-------------HHHHHHHHHHhhCCCCEEEECchhHHHHHHHHhhCCHHHHHhCc
Confidence 47889999999999999999875 55666776666556655 234555556666665
Q ss_pred --ccc--ccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 010322 213 --RVR--TETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE 288 (513)
Q Consensus 213 --~Vr--~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~ 288 (513)
.++ ....+++|++..|+.. .+.+. .+ .++.+++++|+|+|++|++++..|...|+.+|+++||+.++++++++
T Consensus 86 vNTv~~~~g~l~G~NTD~~G~~~-~lL~~-~~-~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~ 162 (272)
T 3pwz_A 86 ANALKFEDGRIVAENFDGIGLLR-DIEEN-LG-EPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRN 162 (272)
T ss_dssp CSEEEEETTEEEEECCHHHHHHH-HHHTT-SC-CCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHH
T ss_pred cceEEccCCeEEEecCCHHHHHH-HHHHH-cC-CCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 233 3445889999998875 21122 22 36789999999999999999999999999889999999999999999
Q ss_pred HhCCcceeecccchHHhhcCCCcEEEEcCCCCcc----CCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCe
Q 010322 289 ELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP----LFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETA 364 (513)
Q Consensus 289 ~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~----vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv 364 (513)
+++...+...+++++.. .++|+||+||++++. .+..+.+. ...+++|+.+
T Consensus 163 ~~~~~~~~~~~~~~l~~--~~~DivInaTp~gm~~~~~~i~~~~l~----------~~~~V~DlvY-------------- 216 (272)
T 3pwz_A 163 ELDHSRLRISRYEALEG--QSFDIVVNATSASLTADLPPLPADVLG----------EAALAYELAY-------------- 216 (272)
T ss_dssp HHCCTTEEEECSGGGTT--CCCSEEEECSSGGGGTCCCCCCGGGGT----------TCSEEEESSC--------------
T ss_pred HhccCCeeEeeHHHhcc--cCCCEEEECCCCCCCCCCCCCCHHHhC----------cCCEEEEeec--------------
Confidence 98641234455666543 689999999998753 22322221 2256778753
Q ss_pred EEEccCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHH
Q 010322 365 RVYNVDDLKEVVAANKEDRLR--KAMEAQAIITEESKQFAAWRDSL-ETVPTIKKLR 418 (513)
Q Consensus 365 ~ly~iDdl~~v~~~~~~~R~~--~~~~ae~iI~e~~~~f~~w~~~~-~~~p~I~~lr 418 (513)
++.....+. + .++++. .+.+.+|++.|...+|+.|++.. +..++++.|+
T Consensus 217 ---~P~~T~ll~-~-A~~~G~~~~~~Gl~ML~~Qa~~~f~lwtg~~~~~~~~~~~l~ 268 (272)
T 3pwz_A 217 ---GKGLTPFLR-L-AREQGQARLADGVGMLVEQAAEAFAWWRGVRPDTRAVINQLT 268 (272)
T ss_dssp ---SCCSCHHHH-H-HHHHSCCEEECTHHHHHHHHHHHHHHHHSCCCCCHHHHHHHC
T ss_pred ---CCCCCHHHH-H-HHHCCCCEEECCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 222222222 1 123332 35778999999999999999865 4444555544
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-16 Score=156.72 Aligned_cols=218 Identities=16% Similarity=0.167 Sum_probs=153.5
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCccc------------chhhHHHHHHHhhCc
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFG------------RNISGLFKHAISVGK 212 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g------------~~L~~lf~~ai~v~k 212 (513)
.+++.+|...|.++.|..|+|.. .++..+++..+..++.| ++++.+...|-.++.
T Consensus 22 ~~hn~~f~~~gl~~~Y~~~~v~~-------------~~l~~~v~~l~~~~~~G~nVTiP~K~~v~~~ld~ls~~A~~iGA 88 (282)
T 3fbt_A 22 YIHKLIFEKVGIKGIYNLFEVPK-------------EKLKESVDTFKIIKCGGLNVTIPYKVEVMKELYEISEKARKIGA 88 (282)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCG-------------GGHHHHHHHHHHTTCCEEEECTTCTTGGGGGCSEECHHHHHHTC
T ss_pred HHHHHHHHHcCCCcEEEEEECCH-------------HHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhcCHHHHHcCC
Confidence 47788999999999999999875 66777777666666655 356666677777766
Q ss_pred --ccc--ccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 010322 213 --RVR--TETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE 288 (513)
Q Consensus 213 --~Vr--~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~ 288 (513)
.+. ....++.|++..|+.. .+.. .+ .++.+++++|+|+|++|++++..|...|+++|+|+||+.++++++++
T Consensus 89 VNTv~~~~g~l~G~NTD~~G~~~-~L~~--~~-~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~ 164 (282)
T 3fbt_A 89 VNTLKFSREGISGFNTDYIGFGK-MLSK--FR-VEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYG 164 (282)
T ss_dssp CCEEEECSSCEEEECCHHHHHHH-HHHH--TT-CCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCT
T ss_pred cceEEeeCCEEEeeCCcHHHHHH-HHHH--cC-CCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 232 3445789999988865 2322 11 35789999999999999999999999999889999999999988887
Q ss_pred HhCCcceeecccchHHhhcCCCcEEEEcCCCCccC------CChhhhhcCCchhhhcCCcEEEEeccCCCCCCccccccc
Q 010322 289 ELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPL------FLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVE 362 (513)
Q Consensus 289 ~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~v------i~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~ 362 (513)
.++ ..+++++.+ + ++|+||+||+.++.- +..+.+. ...+++|+.+
T Consensus 165 ~~~-----~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~~pi~~~~l~----------~~~~v~DlvY------------ 215 (282)
T 3fbt_A 165 EFK-----VISYDELSN-L-KGDVIINCTPKGMYPKEGESPVDKEVVA----------KFSSAVDLIY------------ 215 (282)
T ss_dssp TSE-----EEEHHHHTT-C-CCSEEEECSSTTSTTSTTCCSSCHHHHT----------TCSEEEESCC------------
T ss_pred hcC-----cccHHHHHh-c-cCCEEEECCccCccCCCccCCCCHHHcC----------CCCEEEEEee------------
Confidence 653 335566666 6 899999999986421 2222221 2256778753
Q ss_pred CeEEEccCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Q 010322 363 TARVYNVDDLKEVVAANKEDRL-RKAMEAQAIITEESKQFAAWRDSLETVPTIK 415 (513)
Q Consensus 363 gv~ly~iDdl~~v~~~~~~~R~-~~~~~ae~iI~e~~~~f~~w~~~~~~~p~I~ 415 (513)
++.....+..+ . +++ ..+.+.+|++.|...+|+.|++...-...++
T Consensus 216 -----~P~~T~ll~~A-~-~~G~~~~~Gl~MLv~Qa~~~f~lwtg~~~~~~~~~ 262 (282)
T 3fbt_A 216 -----NPVETLFLKYA-R-ESGVKAVNGLYMLVSQAAASEEIWNDISIDEIIVD 262 (282)
T ss_dssp -----SSSSCHHHHHH-H-HTTCEEECSHHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred -----CCCCCHHHHHH-H-HCcCeEeCcHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 33332322222 1 122 2356789999999999999998764444433
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.5e-16 Score=156.08 Aligned_cols=226 Identities=15% Similarity=0.113 Sum_probs=154.8
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCccc------------chhhHHHHHHHhhCc
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFG------------RNISGLFKHAISVGK 212 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g------------~~L~~lf~~ai~v~k 212 (513)
.+++.+|...|.++.|..|+|.. .++..+++..+..++.| ++++.+...|-.++.
T Consensus 25 ~~hn~~f~~~gl~~~Y~~~~v~~-------------~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~ld~l~~~A~~iGA 91 (281)
T 3o8q_A 25 FIHTLFARQTQQSMIYTAQCVPV-------------DGFTEAAKHFFAQGGRGCNVTVPFKEEAYRFADRLTERARLAGA 91 (281)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCT-------------TCHHHHHHHHHHTTCCEEEECTTSHHHHHHHCSEECHHHHHHTC
T ss_pred HHHHHHHHHcCCCcEEEEeecCH-------------HHHHHHHHHHHhCCCCEEEECCccHHHHHHHHhhcCHHHHhhCe
Confidence 47889999999999999999875 55666666665555555 234555556666665
Q ss_pred --ccc---ccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Q 010322 213 --RVR---TETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIC 287 (513)
Q Consensus 213 --~Vr---~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la 287 (513)
.+. ....+++|++..|+.. .+.. .+ .++.+++++|+|+|++|++++..|...|+.+|+++||+++++++++
T Consensus 92 VNTv~~~~~g~l~G~NTD~~G~~~-~L~~--~~-~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la 167 (281)
T 3o8q_A 92 VNTLKKLDDGEILGDNTDGEGLVQ-DLLA--QQ-VLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLA 167 (281)
T ss_dssp CSEEEECTTSCEEEECCHHHHHHH-HHHH--TT-CCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHH
T ss_pred eeEEEEcCCCcEEEEecHHHHHHH-HHHH--hC-CCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHH
Confidence 232 3446889999999865 2322 22 3678999999999999999999999999988999999999999999
Q ss_pred HHhCCc-ceeecccchHHhhcCCCcEEEEcCCCCcc----CCChhhhhcCCchhhhcCCcEEEEeccCCCCCCccccccc
Q 010322 288 EELNGV-EIIYKPLSEMLSCAADADVVFTSTASEAP----LFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVE 362 (513)
Q Consensus 288 ~~~g~~-~~~~~~~~~~~~~l~~aDVVI~AT~s~~~----vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~ 362 (513)
+.++.. .+...+++++ ..++|+||+||++++. .+..+.+. ...+++|+..
T Consensus 168 ~~~~~~~~~~~~~~~~l---~~~aDiIInaTp~gm~~~~~~l~~~~l~----------~~~~V~DlvY------------ 222 (281)
T 3o8q_A 168 ELVAAYGEVKAQAFEQL---KQSYDVIINSTSASLDGELPAIDPVIFS----------SRSVCYDMMY------------ 222 (281)
T ss_dssp HHHGGGSCEEEEEGGGC---CSCEEEEEECSCCCC----CSCCGGGEE----------EEEEEEESCC------------
T ss_pred HHhhccCCeeEeeHHHh---cCCCCEEEEcCcCCCCCCCCCCCHHHhC----------cCCEEEEecC------------
Confidence 988631 1233344443 2689999999999853 22322221 2267788753
Q ss_pred CeEEEccCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Q 010322 363 TARVYNVDDLKEVVAANKEDRLR--KAMEAQAIITEESKQFAAWRDSL-ETVPTIKKLRA 419 (513)
Q Consensus 363 gv~ly~iDdl~~v~~~~~~~R~~--~~~~ae~iI~e~~~~f~~w~~~~-~~~p~I~~lr~ 419 (513)
++.....+ .. .++++. .+.+.+|++.|...+|+.|++.. +..++++.|++
T Consensus 223 -----~P~~T~ll-~~-A~~~G~~~~~~Gl~Mlv~Qa~~~f~lwtg~~~~~~~~~~~l~~ 275 (281)
T 3o8q_A 223 -----GKGYTVFN-QW-ARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILRELRK 275 (281)
T ss_dssp -----CSSCCHHH-HH-HHHTTCSEEECTHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred -----CCccCHHH-HH-HHHCCCCEEECcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 22222222 11 123332 35678999999999999999865 33344555444
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=99.68 E-value=6.6e-16 Score=155.02 Aligned_cols=224 Identities=16% Similarity=0.127 Sum_probs=155.7
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCccc------------chhhHHHHHHHhhCc
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFG------------RNISGLFKHAISVGK 212 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g------------~~L~~lf~~ai~v~k 212 (513)
.+++.+|...|.++.|..|++.. +-+. ..++..+.+..+..++.| +++|.+...|-.++.
T Consensus 21 ~~hn~~f~~~gl~~~Y~~~~~~~----~~v~----~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~lD~l~~~A~~iGA 92 (283)
T 3jyo_A 21 AMHEAEGLAQGRATVYRRIDTLG----SRAS----GQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDEVSEQATQLGA 92 (283)
T ss_dssp HHHHHHHHHTTCCEEEEEEETTS----TTTT----TCCHHHHHHHHHHTTCCEEEECTTCTTTTGGGSSEECHHHHHHTC
T ss_pred HHHHHHHHHcCCCeEEEEEEccc----cCCC----HHHHHHHHHHHhhCCCCEEEECcccHHHHHHHhhhCCHHHHHhCc
Confidence 47889999999999999997641 0000 155777777766666655 456777777877776
Q ss_pred --ccc---ccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Q 010322 213 --RVR---TETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIC 287 (513)
Q Consensus 213 --~Vr---~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la 287 (513)
.+. ....+++|++..|+.. .+. ... .++.+++++|+|+|++|++++..|...|+++|+|+||+.+++++++
T Consensus 93 VNTv~~~~~g~l~G~NTD~~G~~~-~l~-~~~--~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la 168 (283)
T 3jyo_A 93 VNTVVIDATGHTTGHNTDVSGFGR-GME-EGL--PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA 168 (283)
T ss_dssp CCEEEECTTSCEEEECHHHHHHHH-HHH-HHC--TTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHH
T ss_pred ceEEEECCCCeEEEecCCHHHHHH-HHH-HhC--cCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 333 3345889999999865 232 222 3678999999999999999999999999988999999999999998
Q ss_pred HHhCC----cceeecccchHHhhcCCCcEEEEcCCCCccC-----CChhhhhcCCchhhhcCCcEEEEeccCCCCCCccc
Q 010322 288 EELNG----VEIIYKPLSEMLSCAADADVVFTSTASEAPL-----FLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCV 358 (513)
Q Consensus 288 ~~~g~----~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~v-----i~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v 358 (513)
++++. ..+...+++++.+.+.++|+||+||+.++.- +..+.+ ....+++|+.
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp~Gm~~~~~~pi~~~~l----------~~~~~v~Dlv--------- 229 (283)
T 3jyo_A 169 DVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCL----------TKDHWVGDVV--------- 229 (283)
T ss_dssp HHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSSTTSTTSCSCSSCGGGC----------CTTCEEEECC---------
T ss_pred HHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCCCCCCCCCCCCCCHHHh----------CCCCEEEEec---------
Confidence 87752 1223344557777788999999999987531 121111 1224667764
Q ss_pred ccccCeEEEccCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcC
Q 010322 359 ADVETARVYNVDDLKEVVAANKEDRL-RKAMEAQAIITEESKQFAAWRDSLE 409 (513)
Q Consensus 359 ~~l~gv~ly~iDdl~~v~~~~~~~R~-~~~~~ae~iI~e~~~~f~~w~~~~~ 409 (513)
|++.....+..+ ++++ +.+.+.+|++.|...+|+.|++...
T Consensus 230 --------Y~P~~T~ll~~A--~~~G~~~~~Gl~MLv~Qa~~~f~lwtg~~~ 271 (283)
T 3jyo_A 230 --------YMPIETELLKAA--RALGCETLDGTRMAIHQAVDAFRLFTGLEP 271 (283)
T ss_dssp --------CSSSSCHHHHHH--HHHTCCEECTHHHHHHHHHHHHHHHHSCCC
T ss_pred --------CCCCCCHHHHHH--HHCcCeEeCcHHHHHHHHHHHHHHHcCCCC
Confidence 333333333222 1222 2456789999999999999998753
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.2e-16 Score=157.09 Aligned_cols=223 Identities=15% Similarity=0.134 Sum_probs=155.8
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCccc------------chhhHHHHHHHhhCc
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFG------------RNISGLFKHAISVGK 212 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g------------~~L~~lf~~ai~v~k 212 (513)
.+++.+|...|.++.|..|+|.. .++..+.+..+..++.| +++|.+...|-.++.
T Consensus 48 ~ihn~~f~~~gl~~~Y~~~~v~~-------------~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~lD~ls~~A~~iGA 114 (312)
T 3t4e_A 48 EMQNKALEKAGLPYTYMAFEVDN-------------TTFASAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGA 114 (312)
T ss_dssp HHHHHHHHHHTCSEEEEEEECCT-------------TTHHHHHHHHHHTTCCEEEECTTSHHHHGGGCSEECHHHHHHTC
T ss_pred HHHHHHHHHcCCCcEEEeEecCH-------------HHHHHHHHHHhhCCCCEEEECchhHHHHHHHhhhcCHHHHHhCc
Confidence 47888999999999999999976 56777777777766655 356666677777766
Q ss_pred --ccc--ccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHH
Q 010322 213 --RVR--TETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS---EERVAA 285 (513)
Q Consensus 213 --~Vr--~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs---~~ra~~ 285 (513)
.+. ....++.|++..|+.. .+... + .++.+++++|+|+|++|++++..|...|+++|+|+||+ .+++++
T Consensus 115 VNTi~~~~g~l~G~NTD~~Gf~~-~L~~~--~-~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~ 190 (312)
T 3t4e_A 115 INTIVNDDGYLRGYNTDGTGHIR-AIKES--G-FDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVA 190 (312)
T ss_dssp CSEEEEETTEEEEECHHHHHHHH-HHHHT--T-CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHH
T ss_pred eeEEEecCCEEEEeCCcHHHHHH-HHHhc--C-CCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHH
Confidence 232 3445889999999865 23221 2 46789999999999999999999999999899999999 999999
Q ss_pred HHHHhCC---cceeecccchH---HhhcCCCcEEEEcCCCCccCCChhhh----hcCCchhhhcCCcEEEEeccCCCCCC
Q 010322 286 ICEELNG---VEIIYKPLSEM---LSCAADADVVFTSTASEAPLFLKDHV----QDLPPVEAAVGGLRLFIDISVPRNVG 355 (513)
Q Consensus 286 la~~~g~---~~~~~~~~~~~---~~~l~~aDVVI~AT~s~~~vi~~~~l----~~~~~~~~~~~g~~viiDlavPrdid 355 (513)
++++++. ..+...+++++ .+.+.++|+||+||++++.-.....+ ..+ ....+++|+.
T Consensus 191 la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l-------~~~~~v~D~v------ 257 (312)
T 3t4e_A 191 FAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLL-------RPELLVTECV------ 257 (312)
T ss_dssp HHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEEEECSSTTSTTSTTCCSCCCGGGS-------CTTCEEEECC------
T ss_pred HHHHhhhccCcceEEechHhhhhhHhhccCceEEEECCcCCCCCCCCCcccCCHHHc-------CCCCEEEEec------
Confidence 9887642 11233444543 45567899999999998631111110 111 1224566653
Q ss_pred cccccccCeEEEccCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCc
Q 010322 356 SCVADVETARVYNVDDLKEVVAANKEDRL-RKAMEAQAIITEESKQFAAWRDSLET 410 (513)
Q Consensus 356 p~v~~l~gv~ly~iDdl~~v~~~~~~~R~-~~~~~ae~iI~e~~~~f~~w~~~~~~ 410 (513)
|++.....+..+ ++++ +.+.+.+|++.|...+|+.|++...-
T Consensus 258 -----------Y~P~~T~ll~~A--~~~G~~~~~Gl~MLv~Qa~~af~lwtg~~~~ 300 (312)
T 3t4e_A 258 -----------YNPHMTKLLQQA--QQAGCKTIDGYGMLLWQGAEQFELWTGKAFP 300 (312)
T ss_dssp -----------CSSSSCHHHHHH--HHTTCEEECHHHHHHHHHHHHHHHHHSSCCC
T ss_pred -----------cCCCCCHHHHHH--HHCCCeEECcHHHHHHHHHHHHHHHhCCCCC
Confidence 344333333222 1222 24577899999999999999987543
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-16 Score=158.49 Aligned_cols=215 Identities=18% Similarity=0.178 Sum_probs=147.3
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCccc------------chhhHHHHHHHhhCc
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFG------------RNISGLFKHAISVGK 212 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g------------~~L~~lf~~ai~v~k 212 (513)
.+++.+|...|.++.|..|+|.. .++..+.+..+..++.| +++|.+...|-.++.
T Consensus 17 ~~hn~~f~~~gl~~~Y~~~~v~~-------------~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~~A~~iGA 83 (277)
T 3don_A 17 LMHHANFQSLNLENTYEAINVPV-------------NQFQDIKKIISEKSIDGFNVTIPHKERIIPYLDDINEQAKSVGA 83 (277)
T ss_dssp HHHHHHHHHTTCCCEEEEEECCG-------------GGGGGHHHHHHHTTCSEEEECTTCTTTTGGGCSEECHHHHHHTC
T ss_pred HHHHHHHHHcCcCcEEEEEEcCH-------------HHHHHHHHHHhhCCCCEEEECcCCHHHHHHHhhhCCHHHHHhCc
Confidence 47888999999999999999975 44555555555555544 456777777877776
Q ss_pred --cc--cccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 010322 213 --RV--RTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE 288 (513)
Q Consensus 213 --~V--r~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~ 288 (513)
.+ +....++.|++..|+.. .+ +... .++.+++++|+|+|+||++++..|...|+++|+|+||+.+++++++.
T Consensus 84 VNTv~~~~g~l~G~NTD~~G~~~-~L-~~~~--~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~ 159 (277)
T 3don_A 84 VNTVLVKDGKWIGYNTDGIGYVN-GL-KQIY--EGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSL 159 (277)
T ss_dssp CCEEEEETTEEEEECCHHHHHHH-HH-HHHS--TTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCS
T ss_pred eeEEEecCCEEEEECChHHHHHH-HH-HHhC--CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence 23 34456899999999875 23 2221 35789999999999999999999999999889999999998877664
Q ss_pred HhCCcceeecccchHHhhcCCCcEEEEcCCCCccCCChhhh--hcCCchhhhcCCcEEEEeccC-CCCCCcccccccCeE
Q 010322 289 ELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHV--QDLPPVEAAVGGLRLFIDISV-PRNVGSCVADVETAR 365 (513)
Q Consensus 289 ~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l--~~~~~~~~~~~g~~viiDlav-Prdidp~v~~l~gv~ 365 (513)
.+ ...+++++.+.+.++|+||+||+.++.--....+ +.+ ....+++|+.. |.
T Consensus 160 ~~-----~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~l~~~~l-------~~~~~V~D~vY~P~------------- 214 (277)
T 3don_A 160 NI-----NKINLSHAESHLDEFDIIINTTPAGMNGNTDSVISLNRL-------ASHTLVSDIVYNPY------------- 214 (277)
T ss_dssp CC-----EEECHHHHHHTGGGCSEEEECCC-------CCSSCCTTC-------CSSCEEEESCCSSS-------------
T ss_pred hc-----ccccHhhHHHHhcCCCEEEECccCCCCCCCcCCCCHHHc-------CCCCEEEEecCCCC-------------
Confidence 32 3345677777788999999999987531000011 111 12357788753 32
Q ss_pred EEccCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Q 010322 366 VYNVDDLKEVVAANKEDRL-RKAMEAQAIITEESKQFAAWRDSL 408 (513)
Q Consensus 366 ly~iDdl~~v~~~~~~~R~-~~~~~ae~iI~e~~~~f~~w~~~~ 408 (513)
... .+.... +++ ..+.+.+|++.|...+|+.|++..
T Consensus 215 -----~T~-ll~~A~-~~G~~~~~Gl~MLv~Qa~~~f~lwtg~~ 251 (277)
T 3don_A 215 -----KTP-ILIEAE-QRGNPIYNGLDMFVHQGAESFKIWTNLE 251 (277)
T ss_dssp -----SCH-HHHHHH-HTTCCEECTHHHHHHHHHHHHHHHHSSC
T ss_pred -----CCH-HHHHHH-HCcCEEeCCHHHHHHHHHHHHHHHcCCC
Confidence 111 111211 222 235678999999999999999875
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-15 Score=152.74 Aligned_cols=222 Identities=16% Similarity=0.150 Sum_probs=154.4
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCccc------------chhhHHHHHHHhhCc
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFG------------RNISGLFKHAISVGK 212 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g------------~~L~~lf~~ai~v~k 212 (513)
.+++.+|...|.++.|..|+|.. .++..+.+..+..++.| ++++.+...|-.++.
T Consensus 54 ~ihn~~f~~~Gl~~~Y~~~~v~~-------------~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~ls~~A~~iGA 120 (315)
T 3tnl_A 54 TMHNEAFAKLGLDYVYLAFEVGD-------------KELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGA 120 (315)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCH-------------HHHHHHHHHHHHTTCCEEEECTTSTTTGGGGCSEECHHHHHHTC
T ss_pred HHHHHHHHHcCCCcEEEEEecCH-------------HHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHhcCHHHHHhCc
Confidence 47888999999999999999876 66777777777666655 456777777777776
Q ss_pred --ccc--ccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHH
Q 010322 213 --RVR--TETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS---EERVAA 285 (513)
Q Consensus 213 --~Vr--~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs---~~ra~~ 285 (513)
.+. ....++.|++..|+.. .+.. .+ .++.+++++|+|+|++|++++..|...|+++|+|+||+ .+++++
T Consensus 121 VNTi~~~~g~l~G~NTD~~Gf~~-~L~~--~~-~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~ 196 (315)
T 3tnl_A 121 VNTVVNDDGVLTGHITDGTGYMR-ALKE--AG-HDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEK 196 (315)
T ss_dssp CSEEEEETTEEEEECCHHHHHHH-HHHH--TT-CCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHH
T ss_pred cceEEecCCEEEEeCCCHHHHHH-HHHH--cC-CCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHH
Confidence 232 3445789999999865 2322 22 46789999999999999999999999999889999999 999999
Q ss_pred HHHHhCC---cceeecccc---hHHhhcCCCcEEEEcCCCCccCC-Chhhh---hcCCchhhhcCCcEEEEeccCCCCCC
Q 010322 286 ICEELNG---VEIIYKPLS---EMLSCAADADVVFTSTASEAPLF-LKDHV---QDLPPVEAAVGGLRLFIDISVPRNVG 355 (513)
Q Consensus 286 la~~~g~---~~~~~~~~~---~~~~~l~~aDVVI~AT~s~~~vi-~~~~l---~~~~~~~~~~~g~~viiDlavPrdid 355 (513)
++++++. ..+.+.+++ ++.+.+.++|+||+||+.++.-- ....+ ..+ ....+++|+.
T Consensus 197 la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l-------~~~~~V~Dlv------ 263 (315)
T 3tnl_A 197 TVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADML-------RPELIVSDVV------ 263 (315)
T ss_dssp HHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECSSTTSTTSTTCCSCCCGGGC-------CTTCEEEESC------
T ss_pred HHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEECccCCCCCCCCCCCCCcHHHc-------CCCCEEEEec------
Confidence 9887642 123334444 35566779999999999875310 00001 111 1225667764
Q ss_pred cccccccCeEEEccCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcC
Q 010322 356 SCVADVETARVYNVDDLKEVVAANKEDRL-RKAMEAQAIITEESKQFAAWRDSLE 409 (513)
Q Consensus 356 p~v~~l~gv~ly~iDdl~~v~~~~~~~R~-~~~~~ae~iI~e~~~~f~~w~~~~~ 409 (513)
|++.....+..+ ++++ +.+.+.+|++.|+..+|+.|++...
T Consensus 264 -----------Y~P~~T~ll~~A--~~~G~~~~~Gl~MLv~Qa~~af~lwtG~~~ 305 (315)
T 3tnl_A 264 -----------YKPTKTRLLEIA--EEQGCQTLNGLGMMLWQGAKAFEIWTHKEM 305 (315)
T ss_dssp -----------CSSSSCHHHHHH--HHTTCEEECSHHHHHHHHHHHHHHHHSSCC
T ss_pred -----------cCCCCCHHHHHH--HHCCCeEeCcHHHHHHHHHHHHHHHhCCCC
Confidence 333333333222 1222 2356789999999999999998753
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=99.63 E-value=5.4e-15 Score=147.29 Aligned_cols=225 Identities=16% Similarity=0.153 Sum_probs=147.5
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccc------------hhhHHHHHHHhhCc
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGR------------NISGLFKHAISVGK 212 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~------------~L~~lf~~ai~v~k 212 (513)
.+++.+|...|.++.++.|+|.. .++..+++..+..++.|. +++.+...|-.++.
T Consensus 18 ~~h~~~~~~~g~~~~y~~~~~~~-------------~~l~~~i~~l~~~~~~G~nVT~P~K~~~~~~ld~~~~~A~~iga 84 (271)
T 1nyt_A 18 FIHQQFAQQLNIEHPYGRVLAPI-------------NDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAALAGA 84 (271)
T ss_dssp HHHHHHHHHHTCCCCEEEEECCT-------------TCHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHHHTC
T ss_pred HHHHHHHHHCCCCcEEEEEEcCH-------------HHHHHHHHHHHhCCCCeEEEccCCHHHHHHHHhhcCHHHHHhCC
Confidence 37888999999999999999764 456666666655555552 23333344444544
Q ss_pred --cc---cccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Q 010322 213 --RV---RTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIC 287 (513)
Q Consensus 213 --~V---r~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la 287 (513)
.+ .....++.+++..|+... + +.. + .++.+++|+|+|+|+||++++..|...|. +|+++||+.+++++++
T Consensus 85 vNti~~~~~g~l~G~ntD~~G~~~~-L-~~~-~-~~l~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~~~~~~~la 159 (271)
T 1nyt_A 85 VNTLMRLEDGRLLGDNTDGVGLLSD-L-ERL-S-FIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELA 159 (271)
T ss_dssp CSEEEECTTSCEEEECCHHHHHHHH-H-HHH-T-CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHH
T ss_pred ceEEEEcCCCeEEEeCCCHHHHHHH-H-Hhc-C-cCcCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHH
Confidence 23 223346788888887652 2 221 1 35789999999999999999999999995 7999999999999999
Q ss_pred HHhCCc-ceeecccchHHhhcCCCcEEEEcCCCCccC----CChhhhhcCCchhhhcCCcEEEEeccCCCCCCccccccc
Q 010322 288 EELNGV-EIIYKPLSEMLSCAADADVVFTSTASEAPL----FLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVE 362 (513)
Q Consensus 288 ~~~g~~-~~~~~~~~~~~~~l~~aDVVI~AT~s~~~v----i~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~ 362 (513)
+.++.. .+...+.+++.+ .++|+||+||+.+.+- +..+.+ ....+++|+..-+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~--~~~DivVn~t~~~~~~~~~~i~~~~l----------~~~~~v~D~~y~p---------- 217 (271)
T 1nyt_A 160 KLFAHTGSIQALSMDELEG--HEFDLIINATSSGISGDIPAIPSSLI----------HPGIYCYDMFYQK---------- 217 (271)
T ss_dssp HHTGGGSSEEECCSGGGTT--CCCSEEEECCSCGGGTCCCCCCGGGC----------CTTCEEEESCCCS----------
T ss_pred HHhhccCCeeEecHHHhcc--CCCCEEEECCCCCCCCCCCCCCHHHc----------CCCCEEEEeccCC----------
Confidence 887531 122223333322 5899999999987641 111111 0114556654211
Q ss_pred CeEEEccCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHH
Q 010322 363 TARVYNVDDLKEVVAANKEDRLRK----AMEAQAIITEESKQFAAWRDSL-ETVPTIKKLRAY 420 (513)
Q Consensus 363 gv~ly~iDdl~~v~~~~~~~R~~~----~~~ae~iI~e~~~~f~~w~~~~-~~~p~I~~lr~~ 420 (513)
..... ....|.+. ..+++|++.|.+.+|+.|++.. +..|+++.+++.
T Consensus 218 -------~~t~~----~~~a~~~G~~~~~~G~~mLv~Q~~~af~~w~g~~~~~~~~~~~l~~~ 269 (271)
T 1nyt_A 218 -------GKTPF----LAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEE 269 (271)
T ss_dssp -------SCCHH----HHHHHHTTCCEEECTHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred -------cCCHH----HHHHHHcCCCeecCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 11111 11122222 3378999999999999999987 667888777653
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-15 Score=148.15 Aligned_cols=221 Identities=12% Similarity=0.113 Sum_probs=141.8
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCccc------------chhhHHHHHHHhhCc
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFG------------RNISGLFKHAISVGK 212 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g------------~~L~~lf~~ai~v~k 212 (513)
.+++.+|...|.++.|..|+ . .++..+++..+..++.| ++++.+...|-.++.
T Consensus 22 ~~hn~~~~~~gl~~~Y~~~~-~--------------~~l~~~~~~~~~~~~~G~nVTiP~K~~i~~~~d~~~~~A~~iGA 86 (271)
T 1npy_A 22 TFHNYLYDKLGLNFIYKAFT-T--------------QDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIHPSAQAIES 86 (271)
T ss_dssp HHHHHHHHHHTCCEEEEEEC-C--------------SCHHHHHHHHHHHTCCEEEECTTCTTTTGGGCSEECHHHHTTTC
T ss_pred HHHHHHHHHcCCCcEEEeec-h--------------hhHHHHHHHhccCCCCeEEECcCCHHHHHHHHHHhhHHHHHhCC
Confidence 47788999999999999998 2 23444444444433333 244555555555554
Q ss_pred --ccc--ccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 010322 213 --RVR--TETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE 288 (513)
Q Consensus 213 --~Vr--~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~ 288 (513)
.+. ....++.|++..|+.. .+.+ ++ ...+++|+|+|+|++|++++..|...|+.+|+|+||+.+|++++++
T Consensus 87 vNTi~~~~g~l~g~NTD~~G~~~-~l~~--~~--~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~ 161 (271)
T 1npy_A 87 VNTIVNDNGFLRAYNTDYIAIVK-LIEK--YH--LNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAA 161 (271)
T ss_dssp CCEEEEETTEEEEECHHHHHHHH-HHHH--TT--CCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHH
T ss_pred CCceECcCCEEEeecCCHHHHHH-HHHH--hC--CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence 222 2334678888888765 3432 22 2257899999999999999999999999889999999999999999
Q ss_pred HhCCcceeecccchHHhhcCCCcEEEEcCCCCccC--------CChhhhhcCCchhhhcCCcEEEEeccCCCCCCccccc
Q 010322 289 ELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPL--------FLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVAD 360 (513)
Q Consensus 289 ~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~v--------i~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~ 360 (513)
.++. .+.+ +.. +..+|+||+||++++.. +..+.+. ...+++|+.+
T Consensus 162 ~~~~---~~~~--~~~--~~~~DivInaTp~gm~~~~~~~~~~~~~~~l~----------~~~~v~DlvY---------- 214 (271)
T 1npy_A 162 LYGY---AYIN--SLE--NQQADILVNVTSIGMKGGKEEMDLAFPKAFID----------NASVAFDVVA---------- 214 (271)
T ss_dssp HHTC---EEES--CCT--TCCCSEEEECSSTTCTTSTTTTSCSSCHHHHH----------HCSEEEECCC----------
T ss_pred HcCC---ccch--hhh--cccCCEEEECCCCCccCccccCCCCCCHHHcC----------CCCEEEEeec----------
Confidence 8863 2211 111 46899999999998732 1111111 1257788764
Q ss_pred ccCeEEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 010322 361 VETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAER 423 (513)
Q Consensus 361 l~gv~ly~iDdl~~v~~~~~~~R~~~~~~ae~iI~e~~~~f~~w~~~~~~~p~I~~lr~~~e~ 423 (513)
++..... +....+.....+.+.+|++.|.+.+|+.|++...- ...+++.++.
T Consensus 215 -------~P~~T~l-l~~A~~~G~~~i~Gl~MLv~Qa~~~f~lw~g~~~~---~~~~~~~~~~ 266 (271)
T 1npy_A 215 -------MPVETPF-IRYAQARGKQTISGAAVIVLQAVEQFELYTHQRPS---DELIAEAAAF 266 (271)
T ss_dssp -------SSSSCHH-HHHHHHTTCEEECHHHHHHHHHHHHHHHHHSCCCC---HHHHHHHHHH
T ss_pred -------CCCCCHH-HHHHHHCCCEEECCHHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHH
Confidence 2222211 11211111224567899999999999999987533 2444444433
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-15 Score=148.59 Aligned_cols=219 Identities=12% Similarity=0.057 Sum_probs=143.3
Q ss_pred hhhhHHH----HhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccc------------hhhHHHHHHH
Q 010322 145 ELCEHRF----LLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGR------------NISGLFKHAI 208 (513)
Q Consensus 145 ~~~~~~~----~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~------------~L~~lf~~ai 208 (513)
.+++.+| ...|.++.|..|+| ..++ .+.+..+..++.|. ++|.+...|-
T Consensus 20 ~~hn~~f~~~~~~~gl~~~Y~~~~v-~~l~--------------~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~~A~ 84 (269)
T 3phh_A 20 LIHNACFLTFQKELRFLGHYHPILL-PLES--------------HIKSEFLHLGLSGANVTLPFKERAFQVCDKIKGIAL 84 (269)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEEEEC-CSSS--------------CHHHHHHHTTEEEEEECTTCHHHHHHHSSEECGGGG
T ss_pred HHHHHHHHHHHHHcCCCCEEeeEEh-hhHH--------------HHHHHHhhCCCCEEEEccccHHHHHHHHhhcCHHHH
Confidence 4788889 99999999999999 3332 12222333444442 2333333444
Q ss_pred hhCc--cc--cccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Q 010322 209 SVGK--RV--RTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVA 284 (513)
Q Consensus 209 ~v~k--~V--r~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~ 284 (513)
.++. .+ +....++.|++..|+.. .+ +. ..+++++|+|+|++|++++..|...| .+|+|+||++++++
T Consensus 85 ~iGAVNTi~~~~g~l~G~NTD~~Gf~~-~L-~~------~~~k~vlvlGaGGaaraia~~L~~~G-~~v~V~nRt~~ka~ 155 (269)
T 3phh_A 85 ECGAVNTLVLENDELVGYNTDALGFYL-SL-KQ------KNYQNALILGAGGSAKALACELKKQG-LQVSVLNRSSRGLD 155 (269)
T ss_dssp GTTCCCEEEEETTEEEEECCHHHHHHH-HC-C---------CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSCTTHH
T ss_pred HhCceeEEEeeCCEEEEecChHHHHHH-HH-HH------cCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHH
Confidence 4444 22 23445789999998865 22 11 12899999999999999999999999 78999999999999
Q ss_pred HHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc---CCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccc
Q 010322 285 AICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP---LFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADV 361 (513)
Q Consensus 285 ~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~---vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l 361 (513)
+++ +++. ...+++++ .++|+||+||+.++. .+..+.+....+ ...+++|+..
T Consensus 156 ~la-~~~~---~~~~~~~l----~~~DiVInaTp~Gm~~~~~l~~~~l~~~l~------~~~~v~D~vY----------- 210 (269)
T 3phh_A 156 FFQ-RLGC---DCFMEPPK----SAFDLIINATSASLHNELPLNKEVLKGYFK------EGKLAYDLAY----------- 210 (269)
T ss_dssp HHH-HHTC---EEESSCCS----SCCSEEEECCTTCCCCSCSSCHHHHHHHHH------HCSEEEESCC-----------
T ss_pred HHH-HCCC---eEecHHHh----ccCCEEEEcccCCCCCCCCCChHHHHhhCC------CCCEEEEeCC-----------
Confidence 999 7763 34455543 389999999999864 234332111110 1257788753
Q ss_pred cCeEEEccCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHH
Q 010322 362 ETARVYNVDDLKEVVAANKEDRL-RKAMEAQAIITEESKQFAAWRDSL-ETVPTIKKLRAYA 421 (513)
Q Consensus 362 ~gv~ly~iDdl~~v~~~~~~~R~-~~~~~ae~iI~e~~~~f~~w~~~~-~~~p~I~~lr~~~ 421 (513)
++ ..+. +++. ++++ ..+.+.+|++.|...+|+.|++.. +..++++.||..+
T Consensus 211 ------~P-~T~l-l~~A-~~~G~~~~~Gl~MLv~Qa~~~f~lw~g~~~~~~~~~~~~~~~~ 263 (269)
T 3phh_A 211 ------GF-LTPF-LSLA-KELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVF 263 (269)
T ss_dssp ------SS-CCHH-HHHH-HHTTCCEECSHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHC
T ss_pred ------CC-chHH-HHHH-HHCcCEEECCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 22 1121 1111 1222 235668999999999999999875 5566788887654
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=143.55 Aligned_cols=225 Identities=14% Similarity=0.080 Sum_probs=145.8
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccc------------hhhHHHHHHHhhCc
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGR------------NISGLFKHAISVGK 212 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~------------~L~~lf~~ai~v~k 212 (513)
.+++.+|...|.++.+..|+|.. ..+..+++..+..++.|. +++.+...|-.++.
T Consensus 18 ~~hn~~~~~~gl~~~y~~~~~~~-------------~~l~~~i~~~~~~~~~G~nVT~P~K~~v~~~ld~~~~~A~~iga 84 (272)
T 1p77_A 18 LIQNKLAAQTHQTMEYIAKLGDL-------------DAFEQQLLAFFEEGAKGCNITSPFKERAYQLADEYSQRAKLAEA 84 (272)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCT-------------TTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHHHTC
T ss_pred HHHHHHHHHCCcCeEEEEEEcCH-------------HHHHHHHHHHHhCCCCEEEECcCCHHHHHHHHhhcCHHHHHhCC
Confidence 47889999999999999999865 556666666666565552 23334444555554
Q ss_pred --cc---cccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Q 010322 213 --RV---RTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIC 287 (513)
Q Consensus 213 --~V---r~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la 287 (513)
.+ +....++.+++..|+... + +. .+ .++.+++|+|+|+|+||++++..|...| .+|+++||+.+++++++
T Consensus 85 vNti~~~~~g~l~g~NTD~~G~~~~-L-~~-~~-~~~~~~~vlvlGaGg~g~a~a~~L~~~G-~~v~v~~R~~~~a~~l~ 159 (272)
T 1p77_A 85 CNTLKKLDDGKLYADNTDGIGLVTD-L-QR-LN-WLRPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRTFSKTKELA 159 (272)
T ss_dssp CSEEEECTTSCEEEECCHHHHHHHH-H-HH-TT-CCCTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHH
T ss_pred ceEEEEccCCEEEEecCCHHHHHHH-H-HH-hC-CCcCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHH
Confidence 23 233347888988888752 2 22 22 3578999999999999999999999999 57999999999999999
Q ss_pred HHhCCc-ceeecccchHHhhc-CCCcEEEEcCCCCccC----CChhhhhcCCchhhhcCCcEEEEeccC-CCCCCccccc
Q 010322 288 EELNGV-EIIYKPLSEMLSCA-ADADVVFTSTASEAPL----FLKDHVQDLPPVEAAVGGLRLFIDISV-PRNVGSCVAD 360 (513)
Q Consensus 288 ~~~g~~-~~~~~~~~~~~~~l-~~aDVVI~AT~s~~~v----i~~~~l~~~~~~~~~~~g~~viiDlav-Prdidp~v~~ 360 (513)
+.++.. .+...++ .+.. .++|+||+||+.+++. +..+.+. ...+++|+.. |..
T Consensus 160 ~~~~~~~~~~~~~~---~~~~~~~~DivIn~t~~~~~~~~~~i~~~~l~----------~~~~v~D~~y~p~~------- 219 (272)
T 1p77_A 160 ERFQPYGNIQAVSM---DSIPLQTYDLVINATSAGLSGGTASVDAEILK----------LGSAFYDMQYAKGT------- 219 (272)
T ss_dssp HHHGGGSCEEEEEG---GGCCCSCCSEEEECCCC-------CCCHHHHH----------HCSCEEESCCCTTS-------
T ss_pred HHccccCCeEEeeH---HHhccCCCCEEEECCCCCCCCCCCCCCHHHcC----------CCCEEEEeeCCCCc-------
Confidence 887531 1222222 2222 3899999999998641 1112111 1145677653 211
Q ss_pred ccCeEEEccCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Q 010322 361 VETARVYNVDDLKEVVAANKEDRLR--KAMEAQAIITEESKQFAAWRDSL-ETVPTIKKLRA 419 (513)
Q Consensus 361 l~gv~ly~iDdl~~v~~~~~~~R~~--~~~~ae~iI~e~~~~f~~w~~~~-~~~p~I~~lr~ 419 (513)
+.... .. .++++. .+.+++|++.|.+.+|+.|++.. ...++++.|++
T Consensus 220 ----------~t~ll-~~-a~~~G~~~~v~G~~mLv~Qa~~af~~w~g~~~~~~~~~~~l~~ 269 (272)
T 1p77_A 220 ----------DTPFI-AL-CKSLGLTNVSDGFGMLVAQAAHSFHLWRGVMPDFVSVYEQLKK 269 (272)
T ss_dssp ----------CCHHH-HH-HHHTTCCCEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred ----------CCHHH-HH-HHHcCCCEeeCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 01111 11 111221 23568899999999999999986 56677777665
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.7e-15 Score=144.95 Aligned_cols=204 Identities=17% Similarity=0.133 Sum_probs=145.9
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCccc------------chhhHHHHHHHhhCc
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFG------------RNISGLFKHAISVGK 212 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g------------~~L~~lf~~ai~v~k 212 (513)
.+++.+|...|.++.|..|+|.. .++..+.+..+ .++.| +++|. ...|-.++.
T Consensus 17 ~~hn~~~~~~gl~~~Y~~~~v~~-------------~~l~~~~~~~~-~~~~G~nVT~P~K~~v~~~~d~-~~~A~~iGA 81 (253)
T 3u62_A 17 RLYNEYFKRAGMNHSYGMEEIPP-------------ESFDTEIRRIL-EEYDGFNATIPHKERVMRYVEP-SEDAQRIKA 81 (253)
T ss_dssp HHHHHHHHHHTCCCEEEEEECCG-------------GGHHHHHHHHH-HHCSEEEECTTCTTGGGGGSEE-CHHHHHHTC
T ss_pred HHHHHHHHHcCCCCEEEeEecCH-------------HHHHHHHHHHh-hCCCceeecCChHHHHHHHhCC-CHHHHHcCc
Confidence 47889999999999999999975 55666666655 55544 46777 778887776
Q ss_pred --cccccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh
Q 010322 213 --RVRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL 290 (513)
Q Consensus 213 --~Vr~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~ 290 (513)
.+..+ +++|++..|+.. .+ +. .++.+ +++|||+|+||++++..|...|+++|+|+||++++++++++++
T Consensus 82 vNTi~~~--~G~NTD~~G~~~-~l-~~----~~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~ 152 (253)
T 3u62_A 82 VNCVFRG--KGYNTDWVGVVK-SL-EG----VEVKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPV 152 (253)
T ss_dssp CCEEETT--EEECCHHHHHHH-HT-TT----CCCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSC
T ss_pred ceEeecC--EEEcchHHHHHH-HH-Hh----cCCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc
Confidence 34333 899999998865 22 11 24678 9999999999999999999999988999999999998877665
Q ss_pred CCcceeecccchHHhhcCCCcEEEEcCCCCcc----CCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEE
Q 010322 291 NGVEIIYKPLSEMLSCAADADVVFTSTASEAP----LFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARV 366 (513)
Q Consensus 291 g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~----vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~l 366 (513)
+. .+++++.+.+.++|+||+||+.++. .+..+.+. ...+++|+... +
T Consensus 153 ~~-----~~~~~~~~~~~~aDiVInatp~gm~p~~~~i~~~~l~----------~~~~V~Divy~---~----------- 203 (253)
T 3u62_A 153 KI-----FSLDQLDEVVKKAKSLFNTTSVGMKGEELPVSDDSLK----------NLSLVYDVIYF---D----------- 203 (253)
T ss_dssp EE-----EEGGGHHHHHHTCSEEEECSSTTTTSCCCSCCHHHHT----------TCSEEEECSSS---C-----------
T ss_pred cc-----CCHHHHHhhhcCCCEEEECCCCCCCCCCCCCCHHHhC----------cCCEEEEeeCC---C-----------
Confidence 41 2456666777899999999987642 22222221 22577887542 1
Q ss_pred EccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 010322 367 YNVDDLKEVVAANKEDRLR-KAMEAQAIITEESKQFAAWRDS 407 (513)
Q Consensus 367 y~iDdl~~v~~~~~~~R~~-~~~~ae~iI~e~~~~f~~w~~~ 407 (513)
...+ +...+...+ .+++..|++.|.+.+|+.|++.
T Consensus 204 -----T~ll-~~A~~~G~~~~~~Gl~MLv~Qa~~af~~wtg~ 239 (253)
T 3u62_A 204 -----TPLV-VKARKLGVKHIIKGNLMFYYQAMENLKIWGIY 239 (253)
T ss_dssp -----CHHH-HHHHHHTCSEEECTHHHHHHHHHHHHHHTTCC
T ss_pred -----cHHH-HHHHHCCCcEEECCHHHHHHHHHHHHHHHhCC
Confidence 1111 111111122 3567899999999999999974
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-14 Score=143.26 Aligned_cols=227 Identities=13% Similarity=0.131 Sum_probs=138.3
Q ss_pred hhhhHHHHhcCCceeeeeeeecc----------------CCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHH
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSA----------------GLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAI 208 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~s----------------GldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai 208 (513)
.+++.+|...|.++.+..|.+.. |+...++.+.+|+.++......|+..|.++....
T Consensus 29 ~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nvtiP~k~~i~~~ld~l~~~A~~~gavnti~~------- 101 (275)
T 2hk9_A 29 VFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKF------- 101 (275)
T ss_dssp HHHHHHHHHHTCSEEEEEEECCGGGHHHHHHHHHHHTCCEEEECTTSTTTTGGGCSEECHHHHHHTCCCEEEE-------
T ss_pred HHHHHHHHHcCCCcEEEEEECCHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHHHHhhHHHHHhCCcceEEe-------
Confidence 36778888899999999998643 2223333344444433333333333333332221
Q ss_pred hhCccccccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 010322 209 SVGKRVRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE 288 (513)
Q Consensus 209 ~v~k~Vr~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~ 288 (513)
+.....+.++...|+.. .+.+. + .++.+++|+|||+|.||+.++..|...|+ +|+++||++++++++++
T Consensus 102 ------~~g~~~g~nTd~~G~~~-~l~~~--~-~~~~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r~~~~~~~l~~ 170 (275)
T 2hk9_A 102 ------ENGKAYGYNTDWIGFLK-SLKSL--I-PEVKEKSILVLGAGGASRAVIYALVKEGA-KVFLWNRTKEKAIKLAQ 170 (275)
T ss_dssp ------ETTEEEEECCHHHHHHH-HHHHH--C-TTGGGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSHHHHHHHTT
T ss_pred ------eCCEEEeecCCHHHHHH-HHHHh--C-CCcCCCEEEEECchHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHH
Confidence 12223456676776654 22221 1 35688999999999999999999999999 79999999999988887
Q ss_pred HhCCcceeecccchHHhhcCCCcEEEEcCCCCccCCChhhh--hcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEE
Q 010322 289 ELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHV--QDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARV 366 (513)
Q Consensus 289 ~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l--~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~l 366 (513)
.++. .+. +++.+.+.++|+||+||+.+..--....+ ..+. ...+++|++. . ...
T Consensus 171 ~~g~---~~~--~~~~~~~~~aDiVi~atp~~~~~~~~~~i~~~~l~-------~g~~viDv~~-~--~t~--------- 226 (275)
T 2hk9_A 171 KFPL---EVV--NSPEEVIDKVQVIVNTTSVGLKDEDPEIFNYDLIK-------KDHVVVDIIY-K--ETK--------- 226 (275)
T ss_dssp TSCE---EEC--SCGGGTGGGCSEEEECSSTTSSTTCCCSSCGGGCC-------TTSEEEESSS-S--CCH---------
T ss_pred HcCC---eee--hhHHhhhcCCCEEEEeCCCCCCCCCCCCCCHHHcC-------CCCEEEEcCC-C--hHH---------
Confidence 7652 222 24556677899999999987631000111 1111 1256778764 1 110
Q ss_pred EccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 010322 367 YNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERI 424 (513)
Q Consensus 367 y~iDdl~~v~~~~~~~R~~~~~~ae~iI~e~~~~f~~w~~~~~~~p~I~~lr~~~e~i 424 (513)
+.+...+.....+....+++.|.+.+|+.|++.. |.+..+++.+.++
T Consensus 227 --------ll~~a~~~g~~~v~g~~mlv~q~~~a~~~w~g~~---~~~~~~~~~~~~~ 273 (275)
T 2hk9_A 227 --------LLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNGCE---VPYSVAERSVRDL 273 (275)
T ss_dssp --------HHHHHHHTTCEEECSHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHH
T ss_pred --------HHHHHHHCcCEEECCHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHh
Confidence 1111111111233457899999999999999874 4456666665443
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=137.13 Aligned_cols=219 Identities=16% Similarity=0.173 Sum_probs=138.0
Q ss_pred hhhhHHHHhcCCceeeeeeee---------------ccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHh
Q 010322 145 ELCEHRFLLYNKDATQHLFEV---------------SAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAIS 209 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V---------------~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~ 209 (513)
.+++.+|...|.++.+..|.+ ..|+...++.+.+|+.++......++..+.++.... .
T Consensus 18 ~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~~~G~~vt~P~k~~i~~~~~~l~~~a~~~gavn~i~~-------~ 90 (263)
T 2d5c_A 18 AMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRAFRGVNLTLPLKEAALAHLDWVSPEAQRIGAVNTVLQ-------V 90 (263)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGHHHHHHHHHHHCSEEEECTTCTTGGGGGCSEECHHHHHHTCCCEEEE-------E
T ss_pred HHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHhccccCceEEEcccCHHHHHHHHHHHhHHHHHhCCCCcEEc-------c
Confidence 356666666777776666654 345555666666776666666666666666665442 1
Q ss_pred hCccccccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 010322 210 VGKRVRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEE 289 (513)
Q Consensus 210 v~k~Vr~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~ 289 (513)
.++. .+.++...|+.. .+.+. + .++.| +|+|||+|.||+.++..|...|+ +|+++||+.++++.+++.
T Consensus 91 ~g~~------~g~ntd~~g~~~-~l~~~--~-~~l~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r~~~~~~~l~~~ 158 (263)
T 2d5c_A 91 EGRL------FGFNTDAPGFLE-ALKAG--G-IPLKG-PALVLGAGGAGRAVAFALREAGL-EVWVWNRTPQRALALAEE 158 (263)
T ss_dssp TTEE------EEECCHHHHHHH-HHHHT--T-CCCCS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHH
T ss_pred CCeE------EEeCCCHHHHHH-HHHHh--C-CCCCC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHH
Confidence 2322 334454555543 23222 1 35788 99999999999999999999998 699999999999999988
Q ss_pred hCCcceeecccchHHhhcCCCcEEEEcCCCCcc-----CCChhhhhcCCchhhhcCCcEEEEeccC-CCCCCcccccccC
Q 010322 290 LNGVEIIYKPLSEMLSCAADADVVFTSTASEAP-----LFLKDHVQDLPPVEAAVGGLRLFIDISV-PRNVGSCVADVET 363 (513)
Q Consensus 290 ~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~-----vi~~~~l~~~~~~~~~~~g~~viiDlav-Prdidp~v~~l~g 363 (513)
++. . ++++.+. .++|+||+||+.+.. .+..+.+ . .+ .+++|++. |.+
T Consensus 159 ~~~---~---~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~~~~l---~------~g-~~viD~~~~p~~---------- 211 (263)
T 2d5c_A 159 FGL---R---AVPLEKA-REARLLVNATRVGLEDPSASPLPAELF---P------EE-GAAVDLVYRPLW---------- 211 (263)
T ss_dssp HTC---E---ECCGGGG-GGCSEEEECSSTTTTCTTCCSSCGGGS---C------SS-SEEEESCCSSSS----------
T ss_pred hcc---c---hhhHhhc-cCCCEEEEccCCCCCCCCCCCCCHHHc---C------CC-CEEEEeecCCcc----------
Confidence 864 2 2345555 789999999999852 2221111 1 12 46779863 211
Q ss_pred eEEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010322 364 ARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYA 421 (513)
Q Consensus 364 v~ly~iDdl~~v~~~~~~~R~~~~~~ae~iI~e~~~~f~~w~~~~~~~p~I~~lr~~~ 421 (513)
.+ +.+...+.....+....+++.|.+.+|+.|.+.. |.+..+++.+
T Consensus 212 --------t~-l~~~a~~~g~~~v~g~~mlv~q~~~a~~~w~g~~---~~~~~~~~~~ 257 (263)
T 2d5c_A 212 --------TR-FLREAKAKGLKVQTGLPMLAWQGALAFRLWTGLL---PDPSGMEEAA 257 (263)
T ss_dssp --------CH-HHHHHHHTTCEEECSHHHHHHHHHHHHHHHHSCC---CCHHHHHHHH
T ss_pred --------cH-HHHHHHHCcCEEECcHHHHHHHHHHHHHHHhCCC---CCHHHHHHHH
Confidence 00 1111111111123457789999999999999874 3345555443
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=9.2e-14 Score=143.72 Aligned_cols=183 Identities=20% Similarity=0.232 Sum_probs=134.6
Q ss_pred hHHHH-hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchh-hHHHHHHHhhCcccccccccc----
Q 010322 148 EHRFL-LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNI-SGLFKHAISVGKRVRTETNIA---- 221 (513)
Q Consensus 148 ~~~~~-~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L-~~lf~~ai~v~k~Vr~et~i~---- 221 (513)
..+|. +-|.+++--...|+. .++++..++..+- . +.+..+ |...++++.+.+++|+++.|.
T Consensus 100 ~~Lf~~~agid~~pi~ldv~~--------~dE~v~~vk~~~p---~--f~~i~lED~~~p~af~il~r~r~~~~Ipvf~D 166 (388)
T 1vl6_A 100 AFLFKAFADIDAFPICLSESE--------EEKIISIVKSLEP---S--FGGINLEDIGAPKCFRILQRLSEEMNIPVFHD 166 (388)
T ss_dssp HHHHHHHHCCEEEEEECSCCC--------HHHHHHHHHHTGG---G--CSEEEECSCCTTHHHHHHHHHHHHCSSCEEEH
T ss_pred HHHHHhccCCceEeEEeCCCC--------HHHHHHHHHHcCC---c--ceEeCHhhcCCHHHHHHHHHhhhhcCcceecc
Confidence 34453 346665555555543 4555555554331 1 222334 334788899999999999998
Q ss_pred --CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC----HHHH--------HHHH
Q 010322 222 --AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS----EERV--------AAIC 287 (513)
Q Consensus 222 --~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs----~~ra--------~~la 287 (513)
+++.|++.+|+..+.+..+ .++.+.+|+|+|+|.+|..+++.|...|+++|+++||+ .+|. +.++
T Consensus 167 DiqGTasV~lAal~~A~~i~g-~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A 245 (388)
T 1vl6_A 167 DQQGTAVVVSAAFLNALKLTE-KKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIA 245 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-CCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhC-CCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHH
Confidence 8999999999988877664 47899999999999999999999999999999999998 6552 3555
Q ss_pred HHhCCcceeecccchHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC-CCCcc
Q 010322 288 EELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR-NVGSC 357 (513)
Q Consensus 288 ~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr-didp~ 357 (513)
.+.+. .....++.+++.++|++|.+++ | ++|++++++.+. .+ .+++|+|.|+ .+.|+
T Consensus 246 ~~~~~----~~~~~~L~eav~~ADVlIG~Sa-p-~l~t~emVk~Ma------~~-pIIfalSNPt~E~~p~ 303 (388)
T 1vl6_A 246 RITNP----ERLSGDLETALEGADFFIGVSR-G-NILKPEWIKKMS------RK-PVIFALANPVPEIDPE 303 (388)
T ss_dssp HTSCT----TCCCSCHHHHHTTCSEEEECSC-S-SCSCHHHHTTSC------SS-CEEEECCSSSCSSCHH
T ss_pred Hhhhc----cCchhhHHHHHccCCEEEEeCC-C-CccCHHHHHhcC------CC-CEEEEcCCCCCCCCHH
Confidence 54321 1234678889999999999987 6 889999998853 13 4899999997 45553
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-12 Score=131.84 Aligned_cols=222 Identities=14% Similarity=0.208 Sum_probs=131.1
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCccc------------chhhHHHHHHHhhCc
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFG------------RNISGLFKHAISVGK 212 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g------------~~L~~lf~~ai~v~k 212 (513)
.+++.+|...|.++.++.|++.. .++..+++..+..++.| ++++.+...|-.++.
T Consensus 28 ~~h~~~~~~~gi~~~y~~~~~~~-------------~~l~~~i~~l~~~~~~G~nVtiP~k~~i~~~~d~~~~~a~~iga 94 (287)
T 1nvt_A 28 IMHNAAFKDKGLNYVYVAFDVLP-------------ENLKYVIDGAKALGIVGFNVTIPHKIEIMKYLDEIDKDAQLIGA 94 (287)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCG-------------GGGGGHHHHHHHHTCCEEEECTTSTTGGGGGCSEECHHHHHHTC
T ss_pred HHHHHHHHHcCCCcEEEEEEcCH-------------HHHHHHHHHHHhCCCCEEEEccCCHHHHHHHHHhcCHHHHHhCc
Confidence 46788899999999999998753 22222233222222222 122333333333332
Q ss_pred --cc--cccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 010322 213 --RV--RTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE 288 (513)
Q Consensus 213 --~V--r~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~ 288 (513)
.+ +.....+.++...|+.. .+.... .++.+++++|+|+|++|++++..|...| +|+++||+.++++++++
T Consensus 95 vnt~~~~~g~l~g~nTd~~G~~~-~L~~~~---~~l~~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~r~~~~~~~l~~ 168 (287)
T 1nvt_A 95 VNTIKIEDGKAIGYNTDGIGARM-ALEEEI---GRVKDKNIVIYGAGGAARAVAFELAKDN--NIIIANRTVEKAEALAK 168 (287)
T ss_dssp CCEEEEETTEEEEECCHHHHHHH-HHHHHH---CCCCSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSSHHHHHHHHH
T ss_pred eeeEEeeCCEEEEecCCHHHHHH-HHHHhC---CCcCCCEEEEECchHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHH
Confidence 12 11223456777666654 222222 2578999999999999999999999999 69999999999988887
Q ss_pred HhCCc-------ceeecccchHHhhcCCCcEEEEcCCCCccC------C-ChhhhhcCCchhhhcCCcEEEEeccC-CCC
Q 010322 289 ELNGV-------EIIYKPLSEMLSCAADADVVFTSTASEAPL------F-LKDHVQDLPPVEAAVGGLRLFIDISV-PRN 353 (513)
Q Consensus 289 ~~g~~-------~~~~~~~~~~~~~l~~aDVVI~AT~s~~~v------i-~~~~l~~~~~~~~~~~g~~viiDlav-Prd 353 (513)
.++.. .+.+ .++.+.+.++|+||+||+.+..- + ..+.+ ....+++|+.. |..
T Consensus 169 ~~~~~~~~~~~~~~d~---~~~~~~~~~~DilVn~ag~~~~~~~~~~~~~~~~~l----------~~~~~v~Dv~y~p~~ 235 (287)
T 1nvt_A 169 EIAEKLNKKFGEEVKF---SGLDVDLDGVDIIINATPIGMYPNIDVEPIVKAEKL----------REDMVVMDLIYNPLE 235 (287)
T ss_dssp HHHHHHTCCHHHHEEE---ECTTCCCTTCCEEEECSCTTCTTCCSSCCSSCSTTC----------CSSSEEEECCCSSSS
T ss_pred HHhhhcccccceeEEE---eeHHHhhCCCCEEEECCCCCCCCCCCCCCCCCHHHc----------CCCCEEEEeeeCCcc
Confidence 76420 0111 12245567899999999987641 1 11111 12257788763 211
Q ss_pred CCcccccccCeEEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 010322 354 VGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAY 420 (513)
Q Consensus 354 idp~v~~l~gv~ly~iDdl~~v~~~~~~~R~~~~~~ae~iI~e~~~~f~~w~~~~~~~p~I~~lr~~ 420 (513)
.+ ......+.......+..|++.|.+.+|+.|++... .+..+++.
T Consensus 236 -t~------------------ll~~a~~~G~~~~~Gl~mL~~Qa~~af~~w~g~~~---~~~~~~~~ 280 (287)
T 1nvt_A 236 -TV------------------LLKEAKKVNAKTINGLGMLIYQGAVAFKIWTGVEP---NIEVMKNA 280 (287)
T ss_dssp -CH------------------HHHHHHTTTCEEECTHHHHHHHHHHHHHHHHSSCC---CHHHHHHH
T ss_pred -CH------------------HHHHHHHCCCEEeCcHHHHHHHHHHHHHHHhCCCC---CHHHHHHH
Confidence 11 11111111111234568999999999999998743 23445443
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-12 Score=139.93 Aligned_cols=230 Identities=19% Similarity=0.211 Sum_probs=133.8
Q ss_pred hhhhHHHHhcCCceeeeeeeeccCCCC---------------cccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHh
Q 010322 145 ELCEHRFLLYNKDATQHLFEVSAGLDS---------------LVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAIS 209 (513)
Q Consensus 145 ~~~~~~~~~~G~eav~hlf~V~sGldS---------------~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~ 209 (513)
.+++.+|...|.++.|..|+|. .+.. -++...+|+.+++..+..|+..|+++..++.. .
T Consensus 251 ~~hn~~f~~~gl~~~Y~~~~~~-~l~~~~~~~~~~~~~G~nVTiP~K~~i~~~ld~~~~~A~~iGAvNti~~~~-----~ 324 (523)
T 2o7s_A 251 IVHNQAFKSVDFNGVYVHLLVD-NLVSFLQAYSSSDFAGFSCTIPHKEAALQCCDEVDPLAKSIGAVNTILRRK-----S 324 (523)
T ss_dssp HHHHHHHHHTTCSEEEEEEECS-CHHHHHHHTCSTTEEEEEECTTCHHHHHHHCSEECHHHHHHTCCSEEEECT-----T
T ss_pred HHHHHHHHHcCCCcEEEeEEcc-hHHHHHHHHhcCCCCEEEECCCCHHHHHHHhcccCHHHHHhCCCeEEEEec-----C
Confidence 4788899999999999999983 2221 11222334444444455555555555544321 1
Q ss_pred hCccccccccccCCCchHHHHH-HHHHHh----------hCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeC
Q 010322 210 VGKRVRTETNIAAGAVSVSSAA-VELALM----------KLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNR 278 (513)
Q Consensus 210 v~k~Vr~et~i~~~~~Sva~~A-v~la~~----------~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR 278 (513)
.+|. ++.++...|+.. ++.+.. .+ .++.+++++|+|+|++|++++..|...|+ +|+++||
T Consensus 325 ~gk~------~g~nTD~~G~~~~l~~~~~~~~~~~~~~~~~--~~l~~k~vlV~GaGGig~aia~~L~~~G~-~V~i~~R 395 (523)
T 2o7s_A 325 DGKL------LGYNTDCIGSISAIEDGLRSSGDPSSVPSSS--SPLASKTVVVIGAGGAGKALAYGAKEKGA-KVVIANR 395 (523)
T ss_dssp TCCE------EEECCHHHHHHHHHHHHC---------------------CEEEECCSHHHHHHHHHHHHHCC--CEEEES
T ss_pred CCeE------EEEcCCHHHHHHHHHHhhhhccccccccccc--cccCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 2333 444555555432 222200 01 24678999999999999999999999999 6999999
Q ss_pred CHHHHHHHHHHhCCcceeecccchHHh-hcCCCcEEEEcCCCCc-cCCChhhhhcCCchhhhcCCcEEEEeccC-CCCCC
Q 010322 279 SEERVAAICEELNGVEIIYKPLSEMLS-CAADADVVFTSTASEA-PLFLKDHVQDLPPVEAAVGGLRLFIDISV-PRNVG 355 (513)
Q Consensus 279 s~~ra~~la~~~g~~~~~~~~~~~~~~-~l~~aDVVI~AT~s~~-~vi~~~~l~~~~~~~~~~~g~~viiDlav-Prdid 355 (513)
+.++++++++.++. .+.+++++.+ ....+|++|+|||.+. +.+....+.... ......++|+-+ |..
T Consensus 396 ~~~~a~~la~~~~~---~~~~~~dl~~~~~~~~DilVN~agvg~~~~~~~~~~~~~~-----~~~~~~v~Dvny~p~~-- 465 (523)
T 2o7s_A 396 TYERALELAEAIGG---KALSLTDLDNYHPEDGMVLANTTSMGMQPNVEETPISKDA-----LKHYALVFDAVYTPRI-- 465 (523)
T ss_dssp SHHHHHHHHHHTTC----CEETTTTTTC--CCSEEEEECSSTTCTTCTTCCSSCTTT-----GGGEEEEEECCCSSSS--
T ss_pred CHHHHHHHHHHcCC---ceeeHHHhhhccccCceEEEECCCCCCCCCCCCCCCChHH-----cCcCcEEEEEeeCCcc--
Confidence 99999999988863 2223344433 1245899999999754 211111111110 012256778742 321
Q ss_pred cccccccCeEEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Q 010322 356 SCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPTIKK 416 (513)
Q Consensus 356 p~v~~l~gv~ly~iDdl~~v~~~~~~~R~~~~~~ae~iI~e~~~~f~~w~~~~~~~p~I~~ 416 (513)
.+ .+....+.+...+.+.+|++.|+..+|+.|++.....+.|++
T Consensus 466 ----------------T~-ll~~a~~~G~~~i~Gl~mlv~Qa~~~f~lwtg~~~~~~~~~~ 509 (523)
T 2o7s_A 466 ----------------TR-LLREAEESGAITVSGSEMFVRQAYEQFEIFTGLPAPKELYWQ 509 (523)
T ss_dssp ----------------CH-HHHHHHTTTCEEECHHHHHHHHHHHHHHHHHSSCCCHHHHHH
T ss_pred ----------------CH-HHHHHHHCCCEEECcHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 11 122222212234567899999999999999998766665554
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-12 Score=132.73 Aligned_cols=131 Identities=19% Similarity=0.238 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHhh--------CCCCCCCCCeEEEEcccHH-HHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee
Q 010322 226 SVSSAAVELALMK--------LPESSHATARMLVIGAGKM-GKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII 296 (513)
Q Consensus 226 Sva~~Av~la~~~--------~~~~~l~g~~VlVIGaG~m-G~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~ 296 (513)
.+++.++++++.. ++ .++.|++|+|||+|.| |+.++++|...|++ |+++||+..+....+..++.....
T Consensus 150 cTp~a~v~ll~~~~~~~~~~~~g-~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAt-Vtv~nR~~~~l~~ra~~la~~~~~ 227 (320)
T 1edz_A 150 CTPLAIVKILEFLKIYNNLLPEG-NRLYGKKCIVINRSEIVGRPLAALLANDGAT-VYSVDVNNIQKFTRGESLKLNKHH 227 (320)
T ss_dssp HHHHHHHHHHHHTTCSCTTSCTT-CTTTTCEEEEECCCTTTHHHHHHHHHTTSCE-EEEECSSEEEEEESCCCSSCCCCE
T ss_pred CcHHHHHHHHHhhcccccccccC-CCCCCCEEEEECCCcchHHHHHHHHHHCCCE-EEEEeCchHHHHhHHHHHhhhccc
Confidence 4677888888763 43 4789999999999986 99999999999985 999999844332222333221011
Q ss_pred ec--c-c--chHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEccC
Q 010322 297 YK--P-L--SEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVD 370 (513)
Q Consensus 297 ~~--~-~--~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~iD 370 (513)
.. + . +++.+.+..||+||+||++++++|+.++++. | .++||+++|||+++.+.+.. ..|++-
T Consensus 228 ~t~~~~t~~~~L~e~l~~ADIVIsAtg~p~~vI~~e~vk~---------G-avVIDVgi~rD~d~~v~~~a--~~itPv 294 (320)
T 1edz_A 228 VEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKE---------G-AVCINFACTKNFSDDVKEKA--SLYVPM 294 (320)
T ss_dssp EEEEEECCHHHHHHHHHHCSEEEECCCCTTCCBCTTTSCT---------T-EEEEECSSSCCBCGGGGTTE--EEEESC
T ss_pred ccccccccHhHHHHHhccCCEEEECCCCCcceeCHHHcCC---------C-eEEEEcCCCcccchhHHhhC--CeeCCC
Confidence 11 1 2 6788889999999999999999889888732 2 89999999999998887653 345553
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=6.7e-12 Score=130.13 Aligned_cols=181 Identities=14% Similarity=0.249 Sum_probs=126.5
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch------H----HHHHHHhHhcCcccchhhHHHHHHHhhCc--------cc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ------V----KQVVKVGQGVVGFGRNISGLFKHAISVGK--------RV 214 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ------v----k~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~V 214 (513)
..|||+++.+.+|+++++.+.+|+..+... + .+.++.|......|...++.|++++.++. .+
T Consensus 78 v~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~ 157 (370)
T 4ej6_A 78 TLGHEFCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEIPLTL 157 (370)
T ss_dssp ECCCSEEEEEEEECTTCCSSCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTS
T ss_pred ecCcceEEEEEEECCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCccccCCCCCCcceEEEEEchhhEEECCCCC
Confidence 579999999999999999999999887622 1 23455666665666666778877765544 33
Q ss_pred cccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcc
Q 010322 215 RTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVE 294 (513)
Q Consensus 215 r~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~ 294 (513)
..+.+....|.++++++++.+. ..+|++|+|+|+|++|.++++.++..|+.+|+++++++++. ++++++|..
T Consensus 158 ~~~~aal~~~~~ta~~~l~~~~------~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~~lGa~- 229 (370)
T 4ej6_A 158 DPVHGAFCEPLACCLHGVDLSG------IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKR-RLAEEVGAT- 229 (370)
T ss_dssp CTTGGGGHHHHHHHHHHHHHHT------CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHH-HHHHHHTCS-
T ss_pred CHHHHhhhhHHHHHHHHHHhcC------CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHcCCC-
Confidence 3333333346777888876542 34799999999999999999999999998899999999887 688888863
Q ss_pred eeeccc-chHHhhc--------CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 295 IIYKPL-SEMLSCA--------ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 295 ~~~~~~-~~~~~~l--------~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
..+... +++.+.+ .++|+||+|++.+..+ ...+..+. ++|..++++.
T Consensus 230 ~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~G~~~~~--~~~~~~l~-----~~G~vv~~G~ 285 (370)
T 4ej6_A 230 ATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAGVAETV--KQSTRLAK-----AGGTVVILGV 285 (370)
T ss_dssp EEECTTSSCHHHHHHSTTSSSTTCEEEEEECSCCHHHH--HHHHHHEE-----EEEEEEECSC
T ss_pred EEECCCCcCHHHHHHhhhhccCCCCCEEEECCCCHHHH--HHHHHHhc-----cCCEEEEEec
Confidence 222221 2222221 2699999999976543 34444432 3566666654
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-11 Score=125.32 Aligned_cols=181 Identities=17% Similarity=0.216 Sum_probs=122.4
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch------H----HHHHHHhHhcCcccc-hhhHHHHHHHhhCc--------c
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ------V----KQVVKVGQGVVGFGR-NISGLFKHAISVGK--------R 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ------v----k~A~~~a~~~~~~g~-~L~~lf~~ai~v~k--------~ 213 (513)
..|||+++.+.+|+++++.+-+|+..+... + .+.++.|......|. ..++.|++++.++. .
T Consensus 66 v~G~E~~G~V~~vG~~V~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~ 145 (356)
T 1pl8_A 66 VLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDN 145 (356)
T ss_dssp ECCCEEEEEEEEECTTCCSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTT
T ss_pred ccccceEEEEEEECCCCCCCCCCCEEEEeccCCCCCChHHHCcCcccCCCccccCcCCCCCccccEEEeehHHEEECcCC
Confidence 579999999999999999999999987632 1 123444544433343 23566776665543 3
Q ss_pred ccccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc
Q 010322 214 VRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV 293 (513)
Q Consensus 214 Vr~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~ 293 (513)
+..+......|.++++++++.+. ..+|++|+|+|+|++|.++++.++..|+.+|+++++++++. ++++++|..
T Consensus 146 l~~~~aa~~~~~~ta~~al~~~~------~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~~lGa~ 218 (356)
T 1pl8_A 146 VTFEEGALIEPLSVGIHACRRGG------VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRL-SKAKEIGAD 218 (356)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHT------CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHTTCS
T ss_pred CCHHHHHhhchHHHHHHHHHhcC------CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHhCCC
Confidence 33333333346778888876542 34789999999999999999999999997799999999887 677788853
Q ss_pred ceeeccc----chHHhhc-----CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 294 EIIYKPL----SEMLSCA-----ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 294 ~~~~~~~----~~~~~~l-----~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
..+... ++..+.+ .++|+||+|++.+..+ ...++.+. ++|+.+.++.
T Consensus 219 -~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~g~~~~~--~~~~~~l~-----~~G~iv~~G~ 274 (356)
T 1pl8_A 219 -LVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASI--QAGIYATR-----SGGTLVLVGL 274 (356)
T ss_dssp -EEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHH--HHHHHHSC-----TTCEEEECSC
T ss_pred -EEEcCcccccchHHHHHHHHhCCCCCEEEECCCChHHH--HHHHHHhc-----CCCEEEEEec
Confidence 222221 1222111 4799999999986433 34455443 4676777664
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-11 Score=124.57 Aligned_cols=181 Identities=17% Similarity=0.221 Sum_probs=127.6
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCcccchhhHHHHHHHhhCc--------cc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVGFGRNISGLFKHAISVGK--------RV 214 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~V 214 (513)
..|||+++.+.+|+++++...+|+..+.... ...++.|.....+|...+|.|++++.++. .+
T Consensus 56 i~G~E~~G~V~~vG~~V~~~~~GdrV~~~~~~~~g~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~l 135 (346)
T 4a2c_A 56 TLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDM 135 (346)
T ss_dssp CCCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEEEGGGEEECCTTS
T ss_pred cccEEEEEEEEEECCCcccccCCCeEEeeeccCCCCcccccCCccccCCCcccccCCCCcccccccccchheEEECCCCC
Confidence 5799999999999999999999998776321 22345566666667777788887765544 34
Q ss_pred cccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcc
Q 010322 215 RTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVE 294 (513)
Q Consensus 215 r~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~ 294 (513)
..+.....++.+++++++..+ ...+|++|+|+|+|++|.++++.++..|+..+++++++++|. ++++++|...
T Consensus 136 ~~~~aa~l~~~~~~~~~~~~~------~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~-~~a~~lGa~~ 208 (346)
T 4a2c_A 136 PIEDGAFIEPITVGLHAFHLA------QGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKL-ALAKSFGAMQ 208 (346)
T ss_dssp CGGGGGGHHHHHHHHHHHHHT------TCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHTTCSE
T ss_pred CHHHHHhchHHHHHHHHHHHh------ccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHH-HHHHHcCCeE
Confidence 444444444556666554443 245799999999999999999999999999889999999887 7889998632
Q ss_pred eeecccc-hHHh------hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 295 IIYKPLS-EMLS------CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 295 ~~~~~~~-~~~~------~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.+...+ +..+ ...++|+||+|++++..+ ...++.+. ++|..++++.
T Consensus 209 -~i~~~~~~~~~~~~~~~~~~g~d~v~d~~G~~~~~--~~~~~~l~-----~~G~~v~~g~ 261 (346)
T 4a2c_A 209 -TFNSSEMSAPQMQSVLRELRFNQLILETAGVPQTV--ELAVEIAG-----PHAQLALVGT 261 (346)
T ss_dssp -EEETTTSCHHHHHHHHGGGCSSEEEEECSCSHHHH--HHHHHHCC-----TTCEEEECCC
T ss_pred -EEeCCCCCHHHHHHhhcccCCcccccccccccchh--hhhhheec-----CCeEEEEEec
Confidence 222211 2111 135799999999987654 44455443 3676666664
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-11 Score=126.71 Aligned_cols=180 Identities=17% Similarity=0.278 Sum_probs=115.8
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch----------HHHHHHHhHhcCcccchhhHHHHHHHhhCc--------cc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ----------VKQVVKVGQGVVGFGRNISGLFKHAISVGK--------RV 214 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ----------vk~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~V 214 (513)
..|||+++.+.+|+++++.+.+|+..+... .++.++.|.+....|...++.|++++.++. .+
T Consensus 64 v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~ 143 (348)
T 2d8a_A 64 IMGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKNPKSI 143 (348)
T ss_dssp ECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSCCC------------CEETTTSSCCSSBSEEEEEGGGEEECCTTS
T ss_pred ccCccceEEEEEECCCCCcCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCeecCCCCCcCcceEEeChHHeEECCCCC
Confidence 479999999999999999999999987642 234566776655555445677776665543 33
Q ss_pred cccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcc
Q 010322 215 RTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVE 294 (513)
Q Consensus 215 r~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~ 294 (513)
..+.+....|.++++++++. . .. +|++|+|+|+|++|.++++.++..|+.+|+++++++++. ++++++|..
T Consensus 144 ~~~~aa~~~~~~ta~~~l~~----~--~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~-~~~~~~Ga~- 214 (348)
T 2d8a_A 144 PPEYATLQEPLGNAVDTVLA----G--PI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRR-ELAKKVGAD- 214 (348)
T ss_dssp CHHHHTTHHHHHHHHHHHTT----S--CC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHH-HHHHHHTCS-
T ss_pred CHHHHHhhhHHHHHHHHHHh----c--CC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHhCCC-
Confidence 33333333466777777632 2 24 899999999999999999999999996699999998887 567788753
Q ss_pred eeeccc-chHHh----hc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 295 IIYKPL-SEMLS----CA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 295 ~~~~~~-~~~~~----~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
..+... +++.+ .. .++|+||+|++.+..+ ...++.+. ++|+.+.+..
T Consensus 215 ~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~~~~~--~~~~~~l~-----~~G~iv~~g~ 268 (348)
T 2d8a_A 215 YVINPFEEDVVKEVMDITDGNGVDVFLEFSGAPKAL--EQGLQAVT-----PAGRVSLLGL 268 (348)
T ss_dssp EEECTTTSCHHHHHHHHTTTSCEEEEEECSCCHHHH--HHHHHHEE-----EEEEEEECCC
T ss_pred EEECCCCcCHHHHHHHHcCCCCCCEEEECCCCHHHH--HHHHHHHh-----cCCEEEEEcc
Confidence 122211 22222 22 2699999999975443 33444332 3555555543
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-11 Score=124.60 Aligned_cols=182 Identities=16% Similarity=0.243 Sum_probs=123.6
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch------H----HHHHHHhHhcCcccch-hhHHHHHHHhhCcc-------c
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ------V----KQVVKVGQGVVGFGRN-ISGLFKHAISVGKR-------V 214 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ------v----k~A~~~a~~~~~~g~~-L~~lf~~ai~v~k~-------V 214 (513)
..|||+++.+.+|+++++++.+|+..+... + .+.++.|...+..|.. .++.|++++.++.. +
T Consensus 75 v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~ 154 (363)
T 3m6i_A 75 VLGHESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKIGNM 154 (363)
T ss_dssp ECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTSTTSCCSCBSEEEEEGGGEEECTTC
T ss_pred ccCcceEEEEEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccccCCCCCCccceeEEEEehhhEEECCCC
Confidence 579999999999999999999999988632 1 2345555555444432 45666665544331 4
Q ss_pred cccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcc
Q 010322 215 RTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVE 294 (513)
Q Consensus 215 r~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~ 294 (513)
..+.+....|.++++++++.+. ...|++|+|+|+|++|.++++.++..|++.|+++++++++. +++++++...
T Consensus 155 s~~~aa~~~~~~ta~~~l~~~~------~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~~l~~~~ 227 (363)
T 3m6i_A 155 SYENGAMLEPLSVALAGLQRAG------VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRL-KFAKEICPEV 227 (363)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT------CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHH-HHHHHHCTTC
T ss_pred CHHHHHhhhHHHHHHHHHHHcC------CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHhchhc
Confidence 4444433357788888876542 34789999999999999999999999998799999999888 5677773221
Q ss_pred eeec--c--cchHHh----hc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 295 IIYK--P--LSEMLS----CA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 295 ~~~~--~--~~~~~~----~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+.+. . .+++.+ .. .++|+||+|++.+..+ ...++.+. ++|+.++++.
T Consensus 228 ~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~--~~~~~~l~-----~~G~iv~~G~ 284 (363)
T 3m6i_A 228 VTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSI--AAAIWAVK-----FGGKVFVIGV 284 (363)
T ss_dssp EEEECCSCCHHHHHHHHHHHTSSCCCSEEEECSCCHHHH--HHHHHHSC-----TTCEEEECCC
T ss_pred ccccccccchHHHHHHHHHHhCCCCCCEEEECCCChHHH--HHHHHHhc-----CCCEEEEEcc
Confidence 1111 1 122222 22 3799999999986443 34455443 4677777765
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.8e-09 Score=108.34 Aligned_cols=139 Identities=19% Similarity=0.282 Sum_probs=105.7
Q ss_pred CCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccch
Q 010322 223 GAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSE 302 (513)
Q Consensus 223 ~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~ 302 (513)
++.|++.+++.++...++ ..+.|++|+|||+|.||+.+++.|...|+ +|+++||++++.+.+ .++|. ...++++
T Consensus 133 ~~~svae~a~~~~l~~~~-~~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~-~~~g~---~~~~~~~ 206 (293)
T 3d4o_A 133 NSIPTAEGTIMMAIQHTD-FTIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARI-AEMGM---EPFHISK 206 (293)
T ss_dssp HHHHHHHHHHHHHHHHCS-SCSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH-HHTTS---EEEEGGG
T ss_pred ccHhHHHHHHHHHHHhcC-CCCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHH-HHCCC---eecChhh
Confidence 567888888876554443 46899999999999999999999999998 699999999876444 35553 3334456
Q ss_pred HHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEecc-CCCCCCcccccccCeEEEccCCHHHHH
Q 010322 303 MLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDIS-VPRNVGSCVADVETARVYNVDDLKEVV 376 (513)
Q Consensus 303 ~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDla-vPrdidp~v~~l~gv~ly~iDdl~~v~ 376 (513)
+.+.+.++|+||.|++. .+++.+.+..+. ...++||++ .|.+++.......|+.+|.++.+...+
T Consensus 207 l~~~l~~aDvVi~~~p~--~~i~~~~l~~mk-------~~~~lin~ar~~~~~~~~~a~~~Gv~~~~~~~l~~~v 272 (293)
T 3d4o_A 207 AAQELRDVDVCINTIPA--LVVTANVLAEMP-------SHTFVIDLASKPGGTDFRYAEKRGIKALLVPGLPGIV 272 (293)
T ss_dssp HHHHTTTCSEEEECCSS--CCBCHHHHHHSC-------TTCEEEECSSTTCSBCHHHHHHHTCEEEECCCHHHHH
T ss_pred HHHHhcCCCEEEECCCh--HHhCHHHHHhcC-------CCCEEEEecCCCCCCCHHHHHHCCCEEEECCCCCccc
Confidence 77778999999999975 456666666543 236899998 566665544455688999999998876
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-11 Score=128.20 Aligned_cols=180 Identities=17% Similarity=0.247 Sum_probs=119.4
Q ss_pred hcCCceeeeeeeeccCCC------CcccCcchhhch------H-----HHHHHHhHhcCcccc--------hhhHHHHHH
Q 010322 153 LYNKDATQHLFEVSAGLD------SLVLGEGQILAQ------V-----KQVVKVGQGVVGFGR--------NISGLFKHA 207 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGld------S~vvGE~qIlgQ------v-----k~A~~~a~~~~~~g~--------~L~~lf~~a 207 (513)
..|||+++.+.+|+ +++ .+.+|+..+... + .+.++.|.+....|. ..++.|+++
T Consensus 74 v~GhE~~G~V~~vG-~V~~~~~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~~g~~~~~~~~~~~~G~~aey 152 (380)
T 1vj0_A 74 ILGHEGAGRVVEVN-GEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSH 152 (380)
T ss_dssp CCCCEEEEEEEEES-SCCBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSE
T ss_pred ccCcCcEEEEEEeC-CccccccCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcceeccccccCCCCCCCccccce
Confidence 57999999999999 999 899999988632 1 223344443333332 235777777
Q ss_pred Hhh-Cc--------ccccc-ccccCCCchHHHHHHHHHHhhCCCC-CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEE
Q 010322 208 ISV-GK--------RVRTE-TNIAAGAVSVSSAAVELALMKLPES-SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVV 276 (513)
Q Consensus 208 i~v-~k--------~Vr~e-t~i~~~~~Sva~~Av~la~~~~~~~-~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~ 276 (513)
+.+ +. .+..+ .+....+.++++++++.+ . ..+|++|+|+|+|++|.++++.++..|+.+|+++
T Consensus 153 ~~v~~~~~~~~iP~~l~~~~~Aa~~~~~~ta~~al~~~------~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~ 226 (380)
T 1vj0_A 153 IVLDPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEY------PESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVI 226 (380)
T ss_dssp EEECTTCCEEEECTTSCHHHHHHHTTHHHHHHHHHHTC------SSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEE
T ss_pred EEEcccceEEECCCCCChHHhHhhhcHHHHHHHHHHhc------CCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEE
Confidence 766 54 22333 333334777888877532 2 3478999999999999999999999996579999
Q ss_pred eCCHHHHHHHHHHhCCcceeeccc----chHH----hhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEE
Q 010322 277 NRSEERVAAICEELNGVEIIYKPL----SEML----SCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFI 346 (513)
Q Consensus 277 nRs~~ra~~la~~~g~~~~~~~~~----~~~~----~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~vii 346 (513)
++++++. ++++++|.. ..+... +++. +.. .++|+||+|++.+..+ ...++.+. ++|+.+.+
T Consensus 227 ~~~~~~~-~~~~~lGa~-~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~~g~~~~~--~~~~~~l~-----~~G~iv~~ 297 (380)
T 1vj0_A 227 AGSPNRL-KLAEEIGAD-LTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRAL--LEGSELLR-----RGGFYSVA 297 (380)
T ss_dssp ESCHHHH-HHHHHTTCS-EEEETTTSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHH--HHHHHHEE-----EEEEEEEC
T ss_pred cCCHHHH-HHHHHcCCc-EEEeccccCcchHHHHHHHHhCCCCCcEEEECCCCHHHH--HHHHHHHh-----cCCEEEEE
Confidence 9999887 667788753 222221 1222 222 2699999999986543 34444432 35666666
Q ss_pred ec
Q 010322 347 DI 348 (513)
Q Consensus 347 Dl 348 (513)
+.
T Consensus 298 G~ 299 (380)
T 1vj0_A 298 GV 299 (380)
T ss_dssp CC
T ss_pred ec
Confidence 54
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=7.8e-11 Score=120.95 Aligned_cols=180 Identities=16% Similarity=0.188 Sum_probs=120.9
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch------H----HHHHHHhHhcCcccc-hhhHHHHHHHhhCc--------c
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ------V----KQVVKVGQGVVGFGR-NISGLFKHAISVGK--------R 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ------v----k~A~~~a~~~~~~g~-~L~~lf~~ai~v~k--------~ 213 (513)
..|||+++.+.+|+++++.+.+|+..+... + .+.++.|.+....|. ..++.|++++.++. .
T Consensus 63 v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~ 142 (352)
T 1e3j_A 63 VIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDN 142 (352)
T ss_dssp ECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTT
T ss_pred cccccceEEEEEeCCCCCCCCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcccCcCCCCccceeEEEeChHHeEECcCC
Confidence 579999999999999999999999987532 1 123344444333333 13566766655443 3
Q ss_pred ccccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc
Q 010322 214 VRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV 293 (513)
Q Consensus 214 Vr~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~ 293 (513)
+..+.+....|.++++++++.+. ..+|++|+|+|+|++|.++++.++..|++ |+++++++++. ++++++|..
T Consensus 143 ~~~~~aa~~~~~~ta~~al~~~~------~~~g~~VlV~GaG~vG~~a~qla~~~Ga~-Vi~~~~~~~~~-~~~~~lGa~ 214 (352)
T 1e3j_A 143 VSLEEGALLEPLSVGVHACRRAG------VQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRL-EVAKNCGAD 214 (352)
T ss_dssp SCHHHHHTHHHHHHHHHHHHHHT------CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHHHH-HHHHHTTCS
T ss_pred CCHHHHHhhchHHHHHHHHHhcC------CCCCCEEEEECCCHHHHHHHHHHHHcCCE-EEEEcCCHHHH-HHHHHhCCC
Confidence 33333333357778888876542 34789999999999999999999999996 99999998887 667788753
Q ss_pred ceeeccc--ch----HHhhc-----CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 294 EIIYKPL--SE----MLSCA-----ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 294 ~~~~~~~--~~----~~~~l-----~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
..+... ++ +.+.. .++|+||+|++.+..+ ...++.+. ++|+.+.++.
T Consensus 215 -~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~~g~~~~~--~~~~~~l~-----~~G~iv~~G~ 272 (352)
T 1e3j_A 215 -VTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCI--TIGINITR-----TGGTLMLVGM 272 (352)
T ss_dssp -EEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHH--HHHHHHSC-----TTCEEEECSC
T ss_pred -EEEcCcccccHHHHHHHHhccccCCCCCEEEECCCCHHHH--HHHHHHHh-----cCCEEEEEec
Confidence 222211 11 22222 4699999999986433 34454443 4676766664
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.02 E-value=7.2e-11 Score=121.03 Aligned_cols=177 Identities=17% Similarity=0.244 Sum_probs=114.1
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch-------H----HHHHHHhHhcCcccc----------hhhHHHHHHHhhC
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ-------V----KQVVKVGQGVVGFGR----------NISGLFKHAISVG 211 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ-------v----k~A~~~a~~~~~~g~----------~L~~lf~~ai~v~ 211 (513)
..|||+++.+.+|+++++.+.+|+..+... + .+.++.|. ....|. ..++.|++++.++
T Consensus 61 i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~-~~~~~~~~~~~~~~~~~~~G~~aey~~v~ 139 (348)
T 3two_A 61 IPGHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCT-KVVFTYDCLDSFHDNEPHMGGYSNNIVVD 139 (348)
T ss_dssp CCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCT-TCEESSSSEEGGGTTEECCCSSBSEEEEE
T ss_pred ecCcceeEEEEEECCCCCCCCCCCEEEEeCCcCCCCCChhHhCCCcccCc-ccccccccccccccCCcCCccccceEEec
Confidence 579999999999999999999999997531 1 11233333 111111 1126676666554
Q ss_pred c--------ccccccccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHH
Q 010322 212 K--------RVRTETNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEER 282 (513)
Q Consensus 212 k--------~Vr~et~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~r 282 (513)
. .+..+.... ..+..++++++..+ ...+|++|+|+|+|++|.++++.++..|+ +|+++++++++
T Consensus 140 ~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~------~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~ 212 (348)
T 3two_A 140 ENYVISVDKNAPLEKVAPLLCAGITTYSPLKFS------KVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHK 212 (348)
T ss_dssp GGGCEECCTTSCHHHHGGGGTHHHHHHHHHHHT------TCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTT
T ss_pred hhhEEECCCCCCHHHhhhhhhhHHHHHHHHHhc------CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHH
Confidence 4 222222221 11223346665543 23479999999999999999999999999 69999999988
Q ss_pred HHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 283 VAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 283 a~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
. ++++++|... .+ .+......++|+||+|++.+..+ ...++.+. ++|+.++++..
T Consensus 213 ~-~~~~~lGa~~-v~---~~~~~~~~~~D~vid~~g~~~~~--~~~~~~l~-----~~G~iv~~G~~ 267 (348)
T 3two_A 213 K-QDALSMGVKH-FY---TDPKQCKEELDFIISTIPTHYDL--KDYLKLLT-----YNGDLALVGLP 267 (348)
T ss_dssp H-HHHHHTTCSE-EE---SSGGGCCSCEEEEEECCCSCCCH--HHHHTTEE-----EEEEEEECCCC
T ss_pred H-HHHHhcCCCe-ec---CCHHHHhcCCCEEEECCCcHHHH--HHHHHHHh-----cCCEEEEECCC
Confidence 8 6778888532 22 22222223899999999987543 34454432 45767776653
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-10 Score=117.85 Aligned_cols=181 Identities=15% Similarity=0.206 Sum_probs=119.2
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHH--HHHHHhHhcC-----------cccchhhHHHHHHHhhC--------
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVK--QVVKVGQGVV-----------GFGRNISGLFKHAISVG-------- 211 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk--~A~~~a~~~~-----------~~g~~L~~lf~~ai~v~-------- 211 (513)
..|||+++.+.+|+++++.+.+|+.++..... .....|+.-. ..|...++.|++++.++
T Consensus 56 v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~~ 135 (352)
T 3fpc_A 56 ILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAH 135 (352)
T ss_dssp ECCCEEEEEEEEECTTCCSCCTTCEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBCCSSBSCEEESSHHHHCEE
T ss_pred ccCCcceEEEEEECCCCCcCCCCCEEEEccccCCCCchhhcCCCcCCccccccccccccCCCCcccceEEeccccCeEEE
Confidence 57999999999999999999999998853210 0001122100 11223456666655444
Q ss_pred --cccccccccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 010322 212 --KRVRTETNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE 288 (513)
Q Consensus 212 --k~Vr~et~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~ 288 (513)
..+..+.... ..+.++++++++.+ ...+|++|+|+|+|++|.++++.++..|+.+|++++++++|. ++++
T Consensus 136 iP~~~~~~~aa~~~~~~~ta~~al~~~------~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~-~~~~ 208 (352)
T 3fpc_A 136 LPKEIPLEAAVMIPDMMTTGFHGAELA------NIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCC-DIAL 208 (352)
T ss_dssp CCTTSCHHHHTTTTTHHHHHHHHHHHT------TCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHH-HHHH
T ss_pred CCCCCCHHHHhhccchhHHHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHH
Confidence 3333333333 35677888887553 234799999999999999999999999997799999998887 7888
Q ss_pred HhCCcceeeccc-chHH----hhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 289 ELNGVEIIYKPL-SEML----SCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 289 ~~g~~~~~~~~~-~~~~----~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
++|.. ..+... ++.. +.. .++|+||+|++.+..+ ...++.+. ++|+.+.++.
T Consensus 209 ~lGa~-~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~~~~~--~~~~~~l~-----~~G~~v~~G~ 267 (352)
T 3fpc_A 209 EYGAT-DIINYKNGDIVEQILKATDGKGVDKVVIAGGDVHTF--AQAVKMIK-----PGSDIGNVNY 267 (352)
T ss_dssp HHTCC-EEECGGGSCHHHHHHHHTTTCCEEEEEECSSCTTHH--HHHHHHEE-----EEEEEEECCC
T ss_pred HhCCc-eEEcCCCcCHHHHHHHHcCCCCCCEEEECCCChHHH--HHHHHHHh-----cCCEEEEecc
Confidence 88863 222221 1222 222 2699999999987544 34454432 3566666664
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2e-10 Score=117.56 Aligned_cols=183 Identities=16% Similarity=0.210 Sum_probs=117.8
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch------HH----HHHHHh-Hhc----CcccchhhHHHHHHHhhC-cc---
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ------VK----QVVKVG-QGV----VGFGRNISGLFKHAISVG-KR--- 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ------vk----~A~~~a-~~~----~~~g~~L~~lf~~ai~v~-k~--- 213 (513)
..|||+++.+.+|+++++.+.+|+..+... +. ..++.| ... ...|...++.|++++.++ ..
T Consensus 59 i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~ 138 (345)
T 3jv7_A 59 TLGHEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARHLV 138 (345)
T ss_dssp ECCSEEEEEEEEECTTCCSCCTTCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBCCSSBSEEEESCGGGEE
T ss_pred ccCcccEEEEEEECCCCCCCCCCCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCCceeeEEEEecchhceE
Confidence 579999999999999999999999987632 11 111222 000 002333466777766655 21
Q ss_pred ----ccccccc-cCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 010322 214 ----VRTETNI-AAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE 288 (513)
Q Consensus 214 ----Vr~et~i-~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~ 288 (513)
+..+... ...+..++++++..+... ..+|++|+|+|+|++|.++++.++..|..+|++++++++|. ++++
T Consensus 139 ~~p~~~~~~aa~l~~~~~ta~~~l~~~~~~----~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~-~~~~ 213 (345)
T 3jv7_A 139 PIGDLDPVAAAPLTDAGLTPYHAISRVLPL----LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRL-ALAR 213 (345)
T ss_dssp ECTTCCHHHHGGGGTTTHHHHHHHHTTGGG----CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHH-HHHH
T ss_pred eCCCCCHHHhhhhhhhHHHHHHHHHHhccC----CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHH
Confidence 2222222 234566788887643111 24789999999999999999999998666799999999988 6788
Q ss_pred HhCCcceeecccchHHh----hc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 289 ELNGVEIIYKPLSEMLS----CA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 289 ~~g~~~~~~~~~~~~~~----~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
++|... .+...++..+ .. .++|+||+|++.+..+ ...++.+. ++|+.++++.
T Consensus 214 ~lGa~~-~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~~~~~--~~~~~~l~-----~~G~iv~~G~ 271 (345)
T 3jv7_A 214 EVGADA-AVKSGAGAADAIRELTGGQGATAVFDFVGAQSTI--DTAQQVVA-----VDGHISVVGI 271 (345)
T ss_dssp HTTCSE-EEECSTTHHHHHHHHHGGGCEEEEEESSCCHHHH--HHHHHHEE-----EEEEEEECSC
T ss_pred HcCCCE-EEcCCCcHHHHHHHHhCCCCCeEEEECCCCHHHH--HHHHHHHh-----cCCEEEEECC
Confidence 888532 2222222222 22 2799999999986443 34444432 3566666654
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.7e-11 Score=123.00 Aligned_cols=180 Identities=17% Similarity=0.232 Sum_probs=116.6
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch------H----HHHHHHhHhcCcccchhhHHHHHHHhhCc--------cc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ------V----KQVVKVGQGVVGFGRNISGLFKHAISVGK--------RV 214 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ------v----k~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~V 214 (513)
..|||+++.+.+|+++++.+.+|+..+... + ++.++.|.+....|...++.|++++.++. .+
T Consensus 60 v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~ 139 (343)
T 2dq4_A 60 VTGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDL 139 (343)
T ss_dssp ECCCEEEEEEEEECTTCCSSCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTS
T ss_pred cCCccceEEEEEECCCCCcCCCCCEEEECCCCCCCCChhhhCcCcccCCCcceecCCCCCcceeEEEEchHHeEECCCCC
Confidence 479999999999999999999999988632 1 12344454443344444566776665543 33
Q ss_pred cccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcc
Q 010322 215 RTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVE 294 (513)
Q Consensus 215 r~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~ 294 (513)
..+......|.+++++++. ... .. .|++|+|+|+|++|.++++.++..|+.+|+++++++++. ++++++ ..
T Consensus 140 ~~~~aa~~~~~~ta~~~l~---~~~--~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~-~~~~~l-a~- 210 (343)
T 2dq4_A 140 PFEVAAILEPFGNAVHTVY---AGS--GV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRL-AFARPY-AD- 210 (343)
T ss_dssp CHHHHTTHHHHHHHHHHHH---STT--CC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHH-GGGTTT-CS-
T ss_pred CHHHHHhhhHHHHHHHHHH---HhC--CC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHh-HH-
Confidence 3333333346667777654 112 24 899999999999999999999999995699999998887 455555 32
Q ss_pred eeeccc-chHHhhc-----CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 295 IIYKPL-SEMLSCA-----ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 295 ~~~~~~-~~~~~~l-----~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
..+... +++.+.+ .++|+||+|++.+..+ ...++.+. ++|+.+.+..
T Consensus 211 ~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~--~~~~~~l~-----~~G~iv~~g~ 263 (343)
T 2dq4_A 211 RLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNEAAI--HQGLMALI-----PGGEARILGI 263 (343)
T ss_dssp EEECTTTSCHHHHHHHHHSSCEEEEEECSCCHHHH--HHHHHHEE-----EEEEEEECCC
T ss_pred hccCcCccCHHHHHHHhcCCCCCEEEECCCCHHHH--HHHHHHHh-----cCCEEEEEec
Confidence 122211 1222222 3799999999975433 33444432 3565555554
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-10 Score=118.07 Aligned_cols=180 Identities=10% Similarity=0.162 Sum_probs=120.3
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhc-------hH----HHHHHHhHhcCcccchhhHHHHHHHhhCcc----ccc-
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILA-------QV----KQVVKVGQGVVGFGRNISGLFKHAISVGKR----VRT- 216 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlg-------Qv----k~A~~~a~~~~~~g~~L~~lf~~ai~v~k~----Vr~- 216 (513)
..|||+++.+.+|+++++.+.+|+..++. .+ .+.++.|......|...++.|++++.++.. ++.
T Consensus 60 v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~ 139 (340)
T 3s2e_A 60 IPGHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYGEYVVADPNYVGLLPDK 139 (340)
T ss_dssp CCCSEEEEEEEEECSSCCSCCTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTT
T ss_pred ccCCcceEEEEEECCCCCcCCCCCEEEecCCCCCCCCChHHhCcCcccCccccccCCCCCCcceeEEEechHHEEECCCC
Confidence 57999999999999999999999999532 11 223455655555666677888887766652 221
Q ss_pred ---cccc-cCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC
Q 010322 217 ---ETNI-AAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG 292 (513)
Q Consensus 217 ---et~i-~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~ 292 (513)
+... ...+..+++++++.+ ...+|++|+|+|+|++|.++++.++..|+ +|+++++++++. ++++++|.
T Consensus 140 ~~~~~aa~l~~~~~ta~~~l~~~------~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~-~~~~~lGa 211 (340)
T 3s2e_A 140 VGFVEIAPILCAGVTVYKGLKVT------DTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKL-NLARRLGA 211 (340)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHTT------TCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHTTC
T ss_pred CCHHHhhcccchhHHHHHHHHHc------CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHHcCC
Confidence 1211 112233455665432 23479999999999999999999999999 699999999988 67788885
Q ss_pred cceeeccc-chHHh----hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 293 VEIIYKPL-SEMLS----CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 293 ~~~~~~~~-~~~~~----~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
. ..+... ++..+ ...++|+||++++++..+ ...++.+. ++|..+++++
T Consensus 212 ~-~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~~--~~~~~~l~-----~~G~iv~~G~ 264 (340)
T 3s2e_A 212 E-VAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKAF--SQAIGMVR-----RGGTIALNGL 264 (340)
T ss_dssp S-EEEETTTSCHHHHHHHHHSSEEEEEESSCCHHHH--HHHHHHEE-----EEEEEEECSC
T ss_pred C-EEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHHH--HHHHHHhc-----cCCEEEEeCC
Confidence 3 222221 12222 224799999999876544 34444432 3565665553
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=98.93 E-value=5.3e-10 Score=115.17 Aligned_cols=180 Identities=12% Similarity=0.135 Sum_probs=115.1
Q ss_pred hcCCceeeeeeeeccCCC-CcccCcchhhch-------H----HHHHHHhHhc-Ccc------cchhhHHHHHHHhhCc-
Q 010322 153 LYNKDATQHLFEVSAGLD-SLVLGEGQILAQ-------V----KQVVKVGQGV-VGF------GRNISGLFKHAISVGK- 212 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGld-S~vvGE~qIlgQ-------v----k~A~~~a~~~-~~~------g~~L~~lf~~ai~v~k- 212 (513)
..|||+++.+.+|+++++ .+.+|+...++. + ++.++.|... ... |...++.|++++.++.
T Consensus 65 v~GhE~~G~V~~vG~~v~~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~ 144 (360)
T 1piw_A 65 VVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEH 144 (360)
T ss_dssp ECCCCEEEEEEEECTTCCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGG
T ss_pred ccCcCceEEEEEeCCCCCCCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCCCcceeEEEEchh
Confidence 579999999999999999 999999985431 1 1233444332 112 3334577777666554
Q ss_pred -------cccccccc-cCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Q 010322 213 -------RVRTETNI-AAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVA 284 (513)
Q Consensus 213 -------~Vr~et~i-~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~ 284 (513)
.+..+... ...+..++++++..+ ....|++|+|+|+|++|.++++.++..|++ |+++++++++.
T Consensus 145 ~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~------~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~-Vi~~~~~~~~~- 216 (360)
T 1piw_A 145 FVVPIPENIPSHLAAPLLCGGLTVYSPLVRN------GCGPGKKVGIVGLGGIGSMGTLISKAMGAE-TYVISRSSRKR- 216 (360)
T ss_dssp GEEECCTTSCHHHHGGGGTHHHHHHHHHHHT------TCSTTCEEEEECCSHHHHHHHHHHHHHTCE-EEEEESSSTTH-
T ss_pred heEECCCCCCHHHhhhhhhhHHHHHHHHHHc------CCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEcCCHHHH-
Confidence 22222221 122334556665542 234789999999999999999999999995 99999998887
Q ss_pred HHHHHhCCcceeeccc-c-hHHhhc-CCCcEEEEcCCC--CccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 285 AICEELNGVEIIYKPL-S-EMLSCA-ADADVVFTSTAS--EAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 285 ~la~~~g~~~~~~~~~-~-~~~~~l-~~aDVVI~AT~s--~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
++++++|.. ..+... + +..+.+ .++|+||+|++. +..+ ...++.+. ++|+.+.++.
T Consensus 217 ~~~~~lGa~-~v~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~~--~~~~~~l~-----~~G~iv~~g~ 277 (360)
T 1piw_A 217 EDAMKMGAD-HYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDF--NIMPKAMK-----VGGRIVSISI 277 (360)
T ss_dssp HHHHHHTCS-EEEEGGGTSCHHHHSCSCEEEEEECCSCSTTCCT--TTGGGGEE-----EEEEEEECCC
T ss_pred HHHHHcCCC-EEEcCcCchHHHHHhhcCCCEEEECCCCCcHHHH--HHHHHHhc-----CCCEEEEecC
Confidence 667778753 222221 1 333333 489999999998 4443 33444432 3565555543
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.3e-10 Score=114.90 Aligned_cols=180 Identities=14% Similarity=0.255 Sum_probs=115.9
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch-------HH----HHHHHhHhcCcccchhhHHHHHHHhhCc--------c
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ-------VK----QVVKVGQGVVGFGRNISGLFKHAISVGK--------R 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ-------vk----~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~ 213 (513)
..|||+++.+.+|+++++.+-+|+..+... +. +.++.|......|...++.|++++.++. .
T Consensus 58 v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ 137 (339)
T 1rjw_A 58 IPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDN 137 (339)
T ss_dssp CCCSCEEEEEEEECTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTT
T ss_pred eccccceEEEEEECCCCCcCCCCCEEEEecCCCCCCCCchhhCcCcccCCCcceeecCCCCcceeeEEechHHEEECCCC
Confidence 579999999999999999999999987532 11 2233444333344445677777665544 2
Q ss_pred cccccccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC
Q 010322 214 VRTETNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG 292 (513)
Q Consensus 214 Vr~et~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~ 292 (513)
+..+.... ..+..++++++..+ ....|++|+|+|+|++|.++++.++..|+ +|+++++++++. ++++++|.
T Consensus 138 ~~~~~aa~l~~~~~ta~~~l~~~------~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~-~~~~~lGa 209 (339)
T 1rjw_A 138 LSFEEAAPIFCAGVTTYKALKVT------GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKL-ELAKELGA 209 (339)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHHH------TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHH-HHHHHTTC
T ss_pred CCHHHhhhhhhhHHHHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHCCC
Confidence 22222211 12334567776554 13478999999999999999999999999 699999999888 56677875
Q ss_pred cceeeccc-chHHh----hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 293 VEIIYKPL-SEMLS----CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 293 ~~~~~~~~-~~~~~----~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
. ..+... +++.+ ...++|+||+|++.+..+ ...++.+. ++|+.+.++.
T Consensus 210 ~-~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~~--~~~~~~l~-----~~G~~v~~g~ 262 (339)
T 1rjw_A 210 D-LVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAF--QSAYNSIR-----RGGACVLVGL 262 (339)
T ss_dssp S-EEECTTTSCHHHHHHHHHSSEEEEEESSCCHHHH--HHHHHHEE-----EEEEEEECCC
T ss_pred C-EEecCCCccHHHHHHHHhCCCCEEEECCCCHHHH--HHHHHHhh-----cCCEEEEecc
Confidence 2 222211 12222 125799999999975443 33444332 3455555543
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=3.9e-10 Score=116.60 Aligned_cols=182 Identities=14% Similarity=0.150 Sum_probs=113.3
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch-----H----HHHHHHhHhcC---cc--------------cc------hh
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ-----V----KQVVKVGQGVV---GF--------------GR------NI 200 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ-----v----k~A~~~a~~~~---~~--------------g~------~L 200 (513)
..|||+++.+.+|+++++.+.+|+..+... + ++-++.|.+.. .. |. ..
T Consensus 62 v~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~ 141 (371)
T 1f8f_A 62 VLGHEGSGIIEAIGPNVTELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFA 141 (371)
T ss_dssp CCCCEEEEEEEEECTTCCSCCTTCEEEECCCCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGG
T ss_pred ccCcccceEEEEeCCCCCCCCCCCEEEecCCCCCCChhhhCcCccccccccccccccccccccccccccCCccccccccC
Confidence 579999999999999999999999987632 1 11222332211 00 10 12
Q ss_pred hHHHHHHHhhCc--------cccccccccC-CCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCC
Q 010322 201 SGLFKHAISVGK--------RVRTETNIAA-GAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCT 271 (513)
Q Consensus 201 ~~lf~~ai~v~k--------~Vr~et~i~~-~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~ 271 (513)
++.|++++.++. .+..+..... .+.+++++++. ... ....|++|+|+|+|++|.++++.++..|+.
T Consensus 142 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~---~~~--~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~ 216 (371)
T 1f8f_A 142 QSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACI---NAL--KVTPASSFVTWGAGAVGLSALLAAKVCGAS 216 (371)
T ss_dssp TCCSBSEEEEEGGGEEEECTTSCGGGTGGGGTHHHHHHHHHH---TTT--CCCTTCEEEEESCSHHHHHHHHHHHHHTCS
T ss_pred CccccCeEEechhheEECCCCCCHHHHHHhcchHHHHHHHHH---hcc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence 356666555443 2333332221 24556666542 111 234789999999999999999999999997
Q ss_pred eEEEEeCCHHHHHHHHHHhCCcceeeccc-chHH----hhc-CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEE
Q 010322 272 KMVVVNRSEERVAAICEELNGVEIIYKPL-SEML----SCA-ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLF 345 (513)
Q Consensus 272 ~V~v~nRs~~ra~~la~~~g~~~~~~~~~-~~~~----~~l-~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~vi 345 (513)
+|+++++++++. ++++++|.. ..+... +++. +.. .++|+||+|++.+..+ ...++.+. ++|+.++
T Consensus 217 ~Vi~~~~~~~~~-~~a~~lGa~-~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~~~~--~~~~~~l~-----~~G~iv~ 287 (371)
T 1f8f_A 217 IIIAVDIVESRL-ELAKQLGAT-HVINSKTQDPVAAIKEITDGGVNFALESTGSPEIL--KQGVDALG-----ILGKIAV 287 (371)
T ss_dssp EEEEEESCHHHH-HHHHHHTCS-EEEETTTSCHHHHHHHHTTSCEEEEEECSCCHHHH--HHHHHTEE-----EEEEEEE
T ss_pred eEEEECCCHHHH-HHHHHcCCC-EEecCCccCHHHHHHHhcCCCCcEEEECCCCHHHH--HHHHHHHh-----cCCEEEE
Confidence 799999999887 677888753 222221 1222 222 2699999999975433 33444432 3566666
Q ss_pred Eec
Q 010322 346 IDI 348 (513)
Q Consensus 346 iDl 348 (513)
++.
T Consensus 288 ~G~ 290 (371)
T 1f8f_A 288 VGA 290 (371)
T ss_dssp CCC
T ss_pred eCC
Confidence 654
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.1e-10 Score=117.08 Aligned_cols=180 Identities=15% Similarity=0.155 Sum_probs=113.8
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHH---HHHHhH---hcCc-ccchhhHHHHHHHhhCcc--------cccc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQ---VVKVGQ---GVVG-FGRNISGLFKHAISVGKR--------VRTE 217 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~---A~~~a~---~~~~-~g~~L~~lf~~ai~v~k~--------Vr~e 217 (513)
..|||+++.+.+|+++++.+.+|+..+...... ..+.|. .... .|...++.|++++.++.. +..+
T Consensus 86 v~GhE~~G~V~~vG~~v~~~~vGDrV~~~~~~~c~~g~~~c~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~ 165 (363)
T 3uog_A 86 VPASDMSGVVEAVGKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAA 165 (363)
T ss_dssp CCCCEEEEEEEEECTTCCSCCTTCEEEECSSTTCCSSSCCSCSSCCCCCCTTTTSCCCCBSEEEEEGGGEEECCTTSCHH
T ss_pred CcccceEEEEEEECCCCCCCCCCCEEEEeccccccccccccccccccccccCcCCCCcceeEEEechHHeEECCCCCCHH
Confidence 579999999999999999999999988652210 001121 0111 344456777776665542 2222
Q ss_pred ccccC-CCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee
Q 010322 218 TNIAA-GAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII 296 (513)
Q Consensus 218 t~i~~-~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~ 296 (513)
..... .+..++++++. ... ...+|++|+|+|+|++|.++++.++..|+ +|+++++++++. ++++++|.. ..
T Consensus 166 ~aa~l~~~~~ta~~al~---~~~--~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~-~~~~~lGa~-~v 237 (363)
T 3uog_A 166 EASTLPCAGLTAWFALV---EKG--HLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKL-DRAFALGAD-HG 237 (363)
T ss_dssp HHHTTTTHHHHHHHHHT---TTT--CCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHTCS-EE
T ss_pred HHhhcccHHHHHHHHHH---Hhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhH-HHHHHcCCC-EE
Confidence 22211 23334555541 111 23479999999999999999999999999 699999999888 567888853 22
Q ss_pred eccc-chHHh----hc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 297 YKPL-SEMLS----CA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 297 ~~~~-~~~~~----~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+... +++.+ .. .++|+||+|++.+ .+ ...++.+. ++|..++++.
T Consensus 238 i~~~~~~~~~~v~~~~~g~g~D~vid~~g~~-~~--~~~~~~l~-----~~G~iv~~G~ 288 (363)
T 3uog_A 238 INRLEEDWVERVYALTGDRGADHILEIAGGA-GL--GQSLKAVA-----PDGRISVIGV 288 (363)
T ss_dssp EETTTSCHHHHHHHHHTTCCEEEEEEETTSS-CH--HHHHHHEE-----EEEEEEEECC
T ss_pred EcCCcccHHHHHHHHhCCCCceEEEECCChH-HH--HHHHHHhh-----cCCEEEEEec
Confidence 2211 22222 22 2799999999943 22 34454432 4676777765
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=7.4e-10 Score=114.71 Aligned_cols=180 Identities=14% Similarity=0.138 Sum_probs=114.5
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch-------HH----HHHHHhHhc--Ccc------cchhhHHHHHHHhhCc-
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ-------VK----QVVKVGQGV--VGF------GRNISGLFKHAISVGK- 212 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ-------vk----~A~~~a~~~--~~~------g~~L~~lf~~ai~v~k- 212 (513)
..|||+++.+.+|+++++.+-+|+..+... +. +.++.|.+. +.. |...++.|++++.++.
T Consensus 79 v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G~~aeyv~v~~~ 158 (369)
T 1uuf_A 79 VPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHER 158 (369)
T ss_dssp CCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGG
T ss_pred ecccCceEEEEEECCCCCCCCCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCCCCCcccceEEEcch
Confidence 579999999999999999999999987532 21 223344332 110 2233567777665544
Q ss_pred -------c-ccccccc-cCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHH
Q 010322 213 -------R-VRTETNI-AAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERV 283 (513)
Q Consensus 213 -------~-Vr~et~i-~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra 283 (513)
. +..+... ...+..++++++..+ ...+|++|+|+|+|++|.++++.++..|++ |+++++++++.
T Consensus 159 ~~~~~P~~~ls~~~aa~l~~~~~tA~~al~~~------~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~-Vi~~~~~~~~~ 231 (369)
T 1uuf_A 159 YVLRIRHPQEQLAAVAPLLCAGITTYSPLRHW------QAGPGKKVGVVGIGGLGHMGIKLAHAMGAH-VVAFTTSEAKR 231 (369)
T ss_dssp GCEECCSCGGGHHHHGGGGTHHHHHHHHHHHT------TCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSGGGH
T ss_pred hEEECCCCCCCHHHhhhhhhhHHHHHHHHHhc------CCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHHHH
Confidence 2 2222211 112334456665442 234789999999999999999999999996 99999998888
Q ss_pred HHHHHHhCCcceeecccc-h-HHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 284 AAICEELNGVEIIYKPLS-E-MLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 284 ~~la~~~g~~~~~~~~~~-~-~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
++++++|.. ..+...+ + ..+...++|+||+|++.+..+ ...++.+. ++|..+.++.
T Consensus 232 -~~a~~lGa~-~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~~--~~~~~~l~-----~~G~iv~~G~ 289 (369)
T 1uuf_A 232 -EAAKALGAD-EVVNSRNADEMAAHLKSFDFILNTVAAPHNL--DDFTTLLK-----RDGTMTLVGA 289 (369)
T ss_dssp -HHHHHHTCS-EEEETTCHHHHHTTTTCEEEEEECCSSCCCH--HHHHTTEE-----EEEEEEECCC
T ss_pred -HHHHHcCCc-EEeccccHHHHHHhhcCCCEEEECCCCHHHH--HHHHHHhc-----cCCEEEEecc
Confidence 566778753 2222211 2 223336899999999986443 34444332 3565555553
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.3e-10 Score=118.71 Aligned_cols=163 Identities=17% Similarity=0.267 Sum_probs=112.4
Q ss_pred hcCCceeeeeeeeccCC------CCcccCcchhhch------H----HHHHHHhHhcCcccchhhHHHHHHHhhCcc---
Q 010322 153 LYNKDATQHLFEVSAGL------DSLVLGEGQILAQ------V----KQVVKVGQGVVGFGRNISGLFKHAISVGKR--- 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGl------dS~vvGE~qIlgQ------v----k~A~~~a~~~~~~g~~L~~lf~~ai~v~k~--- 213 (513)
..|||+++.+.+|++++ +.+.+|+..+... + .+.++.|.+....|...++.|++++.++..
T Consensus 94 i~G~E~~G~V~~vG~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~ 173 (404)
T 3ip1_A 94 TLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNELGFNVDGAFAEYVKVDAKYAW 173 (404)
T ss_dssp ECCCEEEEEEEEECTTCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEE
T ss_pred ccCccceEEEEEECCCccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccccCCCCCCCCcceEEechHHeE
Confidence 57999999999999999 8899999888631 1 234556666666666667888887766542
Q ss_pred -ccccc-----------cccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHH
Q 010322 214 -VRTET-----------NIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEE 281 (513)
Q Consensus 214 -Vr~et-----------~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ 281 (513)
++... +....|.+++++++.. ... ...+|++|+|+|+|++|.++++.++..|+.+|++++++++
T Consensus 174 ~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~---~~~-~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~ 249 (404)
T 3ip1_A 174 SLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIV---RGG-GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEV 249 (404)
T ss_dssp ECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTT---TSC-CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHH
T ss_pred eccccccccccccchhHHhhhhHHHHHHHHHHH---hcc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 22211 1111244555555421 110 2347999999999999999999999999978999999998
Q ss_pred HHHHHHHHhCCcceeeccc-chHH----hhc--CCCcEEEEcCCCCc
Q 010322 282 RVAAICEELNGVEIIYKPL-SEML----SCA--ADADVVFTSTASEA 321 (513)
Q Consensus 282 ra~~la~~~g~~~~~~~~~-~~~~----~~l--~~aDVVI~AT~s~~ 321 (513)
|. ++++++|.. ..+... +++. +.. .++|+||+|++.+.
T Consensus 250 ~~-~~~~~lGa~-~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~~~ 294 (404)
T 3ip1_A 250 RR-NLAKELGAD-HVIDPTKENFVEAVLDYTNGLGAKLFLEATGVPQ 294 (404)
T ss_dssp HH-HHHHHHTCS-EEECTTTSCHHHHHHHHTTTCCCSEEEECSSCHH
T ss_pred HH-HHHHHcCCC-EEEcCCCCCHHHHHHHHhCCCCCCEEEECCCCcH
Confidence 87 778889853 222221 2222 222 36999999999873
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.2e-10 Score=117.90 Aligned_cols=183 Identities=16% Similarity=0.228 Sum_probs=115.0
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhc--------hH----HHHHHHhHhcCcc--cc-hhhHHHHHHHhhC------
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILA--------QV----KQVVKVGQGVVGF--GR-NISGLFKHAISVG------ 211 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlg--------Qv----k~A~~~a~~~~~~--g~-~L~~lf~~ai~v~------ 211 (513)
..|||+++ +.+|+++ +.+.+|+..+.. .+ .+.++.|.+.... |. ..++.|++++.++
T Consensus 60 v~G~E~~G-V~~vG~~-~~~~vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~ 137 (357)
T 2b5w_A 60 VLGHEAVG-VVVDPND-TELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPEKYLVR 137 (357)
T ss_dssp ECCSEEEE-EEEECTT-SSCCTTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEEETTBEECCSCBSEEEEEGGGEEE
T ss_pred ccCceeEE-EEEECCC-CCCCCCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccccCccCCCcceeeEEEEchHHeEE
Confidence 57999999 9999999 999999998753 11 1123334333333 32 2356676655544
Q ss_pred --ccccccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHH-HHHH-HHcCCCeEEEEeCCHH---HHH
Q 010322 212 --KRVRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLV-IKHL-VAKGCTKMVVVNRSEE---RVA 284 (513)
Q Consensus 212 --k~Vr~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~i-a~~L-~~~G~~~V~v~nRs~~---ra~ 284 (513)
+.+. +......+.++++++++.+...-+...+.+++|+|+|+|++|.++ ++.+ +..|+++|++++++++ +.
T Consensus 138 iP~~~~-~~aal~~~~~ta~~al~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~- 215 (357)
T 2b5w_A 138 IPRSQA-ELGFLIEPISITEKALEHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTI- 215 (357)
T ss_dssp CCGGGS-TTGGGHHHHHHHHHHHHHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHH-
T ss_pred CCCCcc-hhhhhhchHHHHHHHHHhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHH-
Confidence 3344 333333466778888765542110001222999999999999999 9999 8899977999999887 77
Q ss_pred HHHHHhCCcceeeccc-chHH---hhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 285 AICEELNGVEIIYKPL-SEML---SCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 285 ~la~~~g~~~~~~~~~-~~~~---~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
++++++|... +... +++. +.-.++|+||+|++.+..+ ...++.+. ++|..+.+..
T Consensus 216 ~~~~~lGa~~--v~~~~~~~~~i~~~~gg~Dvvid~~g~~~~~--~~~~~~l~-----~~G~iv~~g~ 274 (357)
T 2b5w_A 216 DIIEELDATY--VDSRQTPVEDVPDVYEQMDFIYEATGFPKHA--IQSVQALA-----PNGVGALLGV 274 (357)
T ss_dssp HHHHHTTCEE--EETTTSCGGGHHHHSCCEEEEEECSCCHHHH--HHHHHHEE-----EEEEEEECCC
T ss_pred HHHHHcCCcc--cCCCccCHHHHHHhCCCCCEEEECCCChHHH--HHHHHHHh-----cCCEEEEEeC
Confidence 6677888532 2111 1222 2212699999999986433 33444432 3565666554
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.8e-08 Score=103.08 Aligned_cols=142 Identities=15% Similarity=0.143 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhhCCC---------CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceee
Q 010322 227 VSSAAVELALMKLPE---------SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIY 297 (513)
Q Consensus 227 va~~Av~la~~~~~~---------~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~ 297 (513)
-||.||..+...++. +.+.+.+|+|||+|.||..+++.++..|+ +|+++||++++.+.+. ++|..-+.+
T Consensus 156 AGy~Av~~aa~~l~~~~~~l~~~~~~v~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~-~lGa~~~~l 233 (381)
T 3p2y_A 156 AGYKAVLLGASLSTRFVPMLTTAAGTVKPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVR-SVGAQWLDL 233 (381)
T ss_dssp HHHHHHHHHHHHCSSCSSCEECSSCEECCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHH-HTTCEECCC
T ss_pred HHHHHHHHHHHHhhhhhhhhhcccCCcCCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH-HcCCeEEec
Confidence 467777776665531 23478999999999999999999999999 5999999999885554 465410000
Q ss_pred --------------------cccchHHhhcCCCcEEEEcCCCC---cc-CCChhhhhcCCchhhhcCCcEEEEeccCCC-
Q 010322 298 --------------------KPLSEMLSCAADADVVFTSTASE---AP-LFLKDHVQDLPPVEAAVGGLRLFIDISVPR- 352 (513)
Q Consensus 298 --------------------~~~~~~~~~l~~aDVVI~AT~s~---~~-vi~~~~l~~~~~~~~~~~g~~viiDlavPr- 352 (513)
...+++.+.+.++|+||+|+..| .| +++++.++.+.+ ..++||+++++
T Consensus 234 ~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~Mkp-------GsVIVDvA~d~G 306 (381)
T 3p2y_A 234 GIDAAGEGGYARELSEAERAQQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQP-------GSVVVDLAGETG 306 (381)
T ss_dssp C-------------CHHHHHHHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCT-------TCEEEETTGGGT
T ss_pred cccccccccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCC-------CcEEEEEeCCCC
Confidence 01234667789999999997443 33 678888887642 37999999764
Q ss_pred -CCCc----ccccccCeEEEccCCHHHHHH
Q 010322 353 -NVGS----CVADVETARVYNVDDLKEVVA 377 (513)
Q Consensus 353 -didp----~v~~l~gv~ly~iDdl~~v~~ 377 (513)
+++. ......|+..|.+++++..+.
T Consensus 307 G~~e~t~~~~~~~~~gV~~~~v~nlP~~vp 336 (381)
T 3p2y_A 307 GNCELTEPGRTIVHHGVTITSPLNLPATMP 336 (381)
T ss_dssp CSBTTCCTTCEEEETTEEEECCSCTGGGSH
T ss_pred CccccccCCCeEEECCEEEEeeCCCchhhH
Confidence 3431 123457999999999987653
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-09 Score=112.09 Aligned_cols=181 Identities=12% Similarity=0.162 Sum_probs=113.1
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch-------HH----HHHHHhHhcC--c-----ccchhhHHHHHHHhhCc--
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ-------VK----QVVKVGQGVV--G-----FGRNISGLFKHAISVGK-- 212 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ-------vk----~A~~~a~~~~--~-----~g~~L~~lf~~ai~v~k-- 212 (513)
..|||+++.+.+|+++++.+.+|+..+... +. +.++.|.... . .|...++.|++++.++.
T Consensus 73 v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~ 152 (366)
T 1yqd_A 73 VPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERY 152 (366)
T ss_dssp CCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEESSSSBCTTSCBCCCSSBSEEEEEGGG
T ss_pred ecccceEEEEEEECCCCCcCCCCCEEEEcCCcCCCCCChhhhCcCcccCCcccccccccccCCCcCCCccccEEEEchhh
Confidence 579999999999999999999999997532 11 1233332110 0 01123566776665544
Q ss_pred ------ccccccccc-CCCchHHHHHHHHHHhhCCCCCC-CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Q 010322 213 ------RVRTETNIA-AGAVSVSSAAVELALMKLPESSH-ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVA 284 (513)
Q Consensus 213 ------~Vr~et~i~-~~~~Sva~~Av~la~~~~~~~~l-~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~ 284 (513)
.+..+.... ..+..++++++..+ +.. .|++|+|+|+|++|.++++.++..|+ +|+++++++++.+
T Consensus 153 ~~~~P~~ls~~~aa~l~~~~~ta~~al~~~------~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~ 225 (366)
T 1yqd_A 153 IIRFPDNMPLDGGAPLLCAGITVYSPLKYF------GLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKE 225 (366)
T ss_dssp CEECCTTSCTTTTGGGGTHHHHHHHHHHHT------TCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHH
T ss_pred EEECCCCCCHHHhhhhhhhHHHHHHHHHhc------CcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 222222211 11223445554432 234 79999999999999999999999999 5999999998885
Q ss_pred HHHHHhCCcceeeccc--chHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 285 AICEELNGVEIIYKPL--SEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 285 ~la~~~g~~~~~~~~~--~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.+.+++|.. ..+... +.+.+...++|+||+|++.+..+ ...++.+. ++|..+.+..
T Consensus 226 ~~~~~lGa~-~v~~~~~~~~~~~~~~~~D~vid~~g~~~~~--~~~~~~l~-----~~G~iv~~g~ 283 (366)
T 1yqd_A 226 EALKNFGAD-SFLVSRDQEQMQAAAGTLDGIIDTVSAVHPL--LPLFGLLK-----SHGKLILVGA 283 (366)
T ss_dssp HHHHTSCCS-EEEETTCHHHHHHTTTCEEEEEECCSSCCCS--HHHHHHEE-----EEEEEEECCC
T ss_pred HHHHhcCCc-eEEeccCHHHHHHhhCCCCEEEECCCcHHHH--HHHHHHHh-----cCCEEEEEcc
Confidence 555478753 122211 12334446899999999986543 44454432 3455555543
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.5e-10 Score=117.27 Aligned_cols=182 Identities=13% Similarity=0.197 Sum_probs=113.1
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch------HH----HHHHHhHhcCc---cc---------chh----------
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ------VK----QVVKVGQGVVG---FG---------RNI---------- 200 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ------vk----~A~~~a~~~~~---~g---------~~L---------- 200 (513)
..|||+++.+.+|+++++.+.+|+..+... +. +.++.|..... .| ...
T Consensus 65 v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~ 144 (378)
T 3uko_A 65 ILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMG 144 (378)
T ss_dssp CCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTT
T ss_pred cCCccceEEEEEeCCCCCcCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccC
Confidence 479999999999999999999999987532 11 11222221100 01 000
Q ss_pred hHHHHHHHhhCc--------cccccccccC-CCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCC
Q 010322 201 SGLFKHAISVGK--------RVRTETNIAA-GAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCT 271 (513)
Q Consensus 201 ~~lf~~ai~v~k--------~Vr~et~i~~-~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~ 271 (513)
.+.|++++.++. .+..+..... .+..++++++. ... ....|++|+|+|+|++|.++++.++..|+.
T Consensus 145 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~---~~~--~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~ 219 (378)
T 3uko_A 145 TSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVW---NTA--KVEPGSNVAIFGLGTVGLAVAEGAKTAGAS 219 (378)
T ss_dssp TCCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHH---TTT--CCCTTCCEEEECCSHHHHHHHHHHHHHTCS
T ss_pred CcceEeEEEechhheEECCCCCCHHHhhhhhhhHHHHHHHHH---hhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence 135666655543 2222222211 23344555431 111 234799999999999999999999999997
Q ss_pred eEEEEeCCHHHHHHHHHHhCCcceeeccc---chHHhhc-----CCCcEEEEcCCCCccCCChhhhhcCCchhhhcC-Cc
Q 010322 272 KMVVVNRSEERVAAICEELNGVEIIYKPL---SEMLSCA-----ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVG-GL 342 (513)
Q Consensus 272 ~V~v~nRs~~ra~~la~~~g~~~~~~~~~---~~~~~~l-----~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~-g~ 342 (513)
+|++++++++|. ++++++|.. ..+... +++.+.+ .++|+||+|++++..+ ...++.+. ++ |.
T Consensus 220 ~Vi~~~~~~~~~-~~a~~lGa~-~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~~~~--~~~~~~l~-----~g~G~ 290 (378)
T 3uko_A 220 RIIGIDIDSKKY-ETAKKFGVN-EFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVM--RAALECCH-----KGWGT 290 (378)
T ss_dssp CEEEECSCTTHH-HHHHTTTCC-EEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHH--HHHHHTBC-----TTTCE
T ss_pred eEEEEcCCHHHH-HHHHHcCCc-EEEccccCchhHHHHHHHhcCCCCCEEEECCCCHHHH--HHHHHHhh-----ccCCE
Confidence 799999999888 688888853 222221 2222221 2799999999986543 34555443 34 66
Q ss_pred EEEEec
Q 010322 343 RLFIDI 348 (513)
Q Consensus 343 ~viiDl 348 (513)
.++++.
T Consensus 291 iv~~G~ 296 (378)
T 3uko_A 291 SVIVGV 296 (378)
T ss_dssp EEECSC
T ss_pred EEEEcc
Confidence 777765
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=7.5e-10 Score=114.50 Aligned_cols=181 Identities=14% Similarity=0.167 Sum_probs=113.8
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH------H----HHHHHhHhcCcc---cc------------------hhh
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV------K----QVVKVGQGVVGF---GR------------------NIS 201 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv------k----~A~~~a~~~~~~---g~------------------~L~ 201 (513)
..|||+++.+.+|+++++.+-+|+..+.... . +.++.|.+.... |. .-+
T Consensus 65 v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~ 144 (373)
T 1p0f_A 65 ILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGT 144 (373)
T ss_dssp CCCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTT
T ss_pred ccCcCceEEEEEECCCCCccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccccCCccccccCCcccccccCC
Confidence 5799999999999999999999999876421 1 112222221100 11 013
Q ss_pred HHHHHHHhhCc--------cccccccccC-CCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCe
Q 010322 202 GLFKHAISVGK--------RVRTETNIAA-GAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTK 272 (513)
Q Consensus 202 ~lf~~ai~v~k--------~Vr~et~i~~-~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~ 272 (513)
+.|++++.++. .+..+ .... .+..++++++. ... ...+|++|+|+|+|++|.++++.++..|+.+
T Consensus 145 G~~aey~~v~~~~~~~iP~~l~~~-aa~l~~~~~ta~~~l~---~~~--~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~ 218 (373)
T 1p0f_A 145 STFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFATGYGAAV---NTA--KVTPGSTCAVFGLGGVGFSAIVGCKAAGASR 218 (373)
T ss_dssp CCSBSEEEEETTSEEEECTTCCGG-GGGGGTHHHHHHHHHH---TTT--CCCTTCEEEEECCSHHHHHHHHHHHHHTCSE
T ss_pred ccceeEEEEchhhEEECCCCCChh-hhhhhhHHHHHHHHHH---hcc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence 66777665543 23333 2221 23344554431 111 2347899999999999999999999999977
Q ss_pred EEEEeCCHHHHHHHHHHhCCcceeeccc---chHHhhc-----CCCcEEEEcCCCCccCCChhhhhcCCchhhhcC-CcE
Q 010322 273 MVVVNRSEERVAAICEELNGVEIIYKPL---SEMLSCA-----ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVG-GLR 343 (513)
Q Consensus 273 V~v~nRs~~ra~~la~~~g~~~~~~~~~---~~~~~~l-----~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~-g~~ 343 (513)
|+++++++++. ++++++|.. ..+... +++.+.+ .++|+||+|++.+..+ ...++.+. ++ |+.
T Consensus 219 Vi~~~~~~~~~-~~a~~lGa~-~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~~~~~--~~~~~~l~-----~~~G~i 289 (373)
T 1p0f_A 219 IIGVGTHKDKF-PKAIELGAT-ECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETM--MNALQSTY-----CGSGVT 289 (373)
T ss_dssp EEEECSCGGGH-HHHHHTTCS-EEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHH--HHHHHTBC-----TTTCEE
T ss_pred EEEECCCHHHH-HHHHHcCCc-EEEecccccchHHHHHHHHhCCCCCEEEECCCCHHHH--HHHHHHHh-----cCCCEE
Confidence 99999999888 677888853 222221 1232221 3799999999975443 34455443 46 766
Q ss_pred EEEec
Q 010322 344 LFIDI 348 (513)
Q Consensus 344 viiDl 348 (513)
+.++.
T Consensus 290 v~~G~ 294 (373)
T 1p0f_A 290 VVLGL 294 (373)
T ss_dssp EECCC
T ss_pred EEEcc
Confidence 66664
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.7e-10 Score=114.76 Aligned_cols=181 Identities=17% Similarity=0.232 Sum_probs=115.7
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch----------HHHHHHHhHhcCcccchhhHHHHHHHhhC-cc--cccccc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ----------VKQVVKVGQGVVGFGRNISGLFKHAISVG-KR--VRTETN 219 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ----------vk~A~~~a~~~~~~g~~L~~lf~~ai~v~-k~--Vr~et~ 219 (513)
..|||+++.+.+|+++ +++.+|+..+... .++.++.|.+....|...++.|++++.++ .. ++- .+
T Consensus 62 i~G~E~~G~V~~vG~~-~~~~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~ 139 (344)
T 2h6e_A 62 ILGHENAGTIVEVGEL-AKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTNGGFSEYMLVKSSRWLVKL-NS 139 (344)
T ss_dssp ECCCCEEEEEEEECTT-CCCCTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBCBTTTBCCSSBSEEEESCGGGEEEE-SS
T ss_pred cccccceEEEEEECCC-CCCCCCCEEEECCCCCCCCChhhhCCCcccCCCccccccccCCcceeeEEecCcccEEEe-CC
Confidence 5799999999999999 9999999985421 12334455544445544567788877777 42 111 12
Q ss_pred ccC---CCch----HHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHh
Q 010322 220 IAA---GAVS----VSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAK--GCTKMVVVNRSEERVAAICEEL 290 (513)
Q Consensus 220 i~~---~~~S----va~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~--G~~~V~v~nRs~~ra~~la~~~ 290 (513)
++. .+++ ++++++..+....+ .. +|++|+|+|+|++|.++++.++.. |++ |+++++++++. ++++++
T Consensus 140 l~~~~aa~l~~~~~ta~~al~~~~~~~~-~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~-Vi~~~~~~~~~-~~~~~l 215 (344)
T 2h6e_A 140 LSPVEAAPLADAGTTSMGAIRQALPFIS-KF-AEPVVIVNGIGGLAVYTIQILKALMKNIT-IVGISRSKKHR-DFALEL 215 (344)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHHHHHHHT-TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCE-EEEECSCHHHH-HHHHHH
T ss_pred CCHHHhhhhhhhhHHHHHHHHhhhhccc-CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCE-EEEEeCCHHHH-HHHHHh
Confidence 211 1233 34666554310000 13 789999999999999999999999 985 99999999887 667778
Q ss_pred CCcceeecccch---HHhhc---CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 291 NGVEIIYKPLSE---MLSCA---ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 291 g~~~~~~~~~~~---~~~~l---~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
|.. .+..+.+ ....+ .++|+||+|++.+..+ ...++.+. ++|+.+.+..
T Consensus 216 Ga~--~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~--~~~~~~l~-----~~G~iv~~g~ 270 (344)
T 2h6e_A 216 GAD--YVSEMKDAESLINKLTDGLGASIAIDLVGTEETT--YNLGKLLA-----QEGAIILVGM 270 (344)
T ss_dssp TCS--EEECHHHHHHHHHHHHTTCCEEEEEESSCCHHHH--HHHHHHEE-----EEEEEEECCC
T ss_pred CCC--EEeccccchHHHHHhhcCCCccEEEECCCChHHH--HHHHHHhh-----cCCEEEEeCC
Confidence 753 2222221 11222 2799999999986333 33444332 3565666554
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=3.3e-09 Score=109.80 Aligned_cols=146 Identities=14% Similarity=0.109 Sum_probs=107.5
Q ss_pred HhHhcCcccchhhHHHHHH-HhhCccccccccc---cCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHH
Q 010322 189 VGQGVVGFGRNISGLFKHA-ISVGKRVRTETNI---AAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKH 264 (513)
Q Consensus 189 ~a~~~~~~g~~L~~lf~~a-i~v~k~Vr~et~i---~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~ 264 (513)
.|.+.|+.+..++-+|+++ +.++|.++..+.+ ...+.||.+.+.++++..++..++.|++|+|+|+|.||..+++.
T Consensus 112 ~A~D~Gt~~~~m~~l~~~~~~~tGK~~~~ggs~~~~~aTg~GV~~~~~~~~~~~~G~~~L~GktV~V~G~G~VG~~~A~~ 191 (364)
T 1leh_A 112 TAEDVGTTVDDMDLIHQETDYVTGISPAFGSSGNPSPVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKK 191 (364)
T ss_dssp BCBCTTCCHHHHHHHHTTCSCBCSCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSHHHHHHHHH
T ss_pred EcccCCCCHHHHHHHHHhcchhcccccccCCCCCcccchhhHHHHHHHHHHHhhccccCCCcCEEEEECchHHHHHHHHH
Confidence 4556677778888899888 8889988776654 23457888888888777653127899999999999999999999
Q ss_pred HHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEE
Q 010322 265 LVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRL 344 (513)
Q Consensus 265 L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~v 344 (513)
|...|++ |+++|++++++.+++++++. ...+.+++.. ..+||+|.|. ...+++.+.++.+ +..+
T Consensus 192 L~~~Gak-Vvv~D~~~~~l~~~a~~~ga---~~v~~~~ll~--~~~DIvip~a--~~~~I~~~~~~~l--------g~~i 255 (364)
T 1leh_A 192 LNTEGAK-LVVTDVNKAAVSAAVAEEGA---DAVAPNAIYG--VTCDIFAPCA--LGAVLNDFTIPQL--------KAKV 255 (364)
T ss_dssp HHHTTCE-EEEECSCHHHHHHHHHHHCC---EECCGGGTTT--CCCSEEEECS--CSCCBSTTHHHHC--------CCSE
T ss_pred HHHCCCE-EEEEcCCHHHHHHHHHHcCC---EEEChHHHhc--cCCcEeeccc--hHHHhCHHHHHhC--------CCcE
Confidence 9999995 88999999999889998864 3333333211 3899999984 3446666655443 2346
Q ss_pred EEeccC
Q 010322 345 FIDISV 350 (513)
Q Consensus 345 iiDlav 350 (513)
++.-+.
T Consensus 256 V~e~An 261 (364)
T 1leh_A 256 IAGSAD 261 (364)
T ss_dssp ECCSCS
T ss_pred EEeCCC
Confidence 666554
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-09 Score=111.44 Aligned_cols=159 Identities=15% Similarity=0.157 Sum_probs=106.7
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhc------hHH----HHHHHhHhcC------cccc----hhhHHHHHHHhhCc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILA------QVK----QVVKVGQGVV------GFGR----NISGLFKHAISVGK 212 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlg------Qvk----~A~~~a~~~~------~~g~----~L~~lf~~ai~v~k 212 (513)
..|||+++.+.+|+++++.+-+|+..+.. .+. +.++.|.... ..|. ..++.|++++.++.
T Consensus 64 v~GhE~~G~V~~vG~~v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~ 143 (398)
T 1kol_A 64 VLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPY 143 (398)
T ss_dssp BCCCCEEEEEEEECTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESS
T ss_pred ccCcccEEEEEEECCCCCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccCCCCCceeeeEEEecc
Confidence 57999999999999999999999998752 211 1233333221 1121 12456666555543
Q ss_pred ----------cccccc-----cccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEe
Q 010322 213 ----------RVRTET-----NIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVN 277 (513)
Q Consensus 213 ----------~Vr~et-----~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~n 277 (513)
.+..+. .....+.+++++++..+ ....|++|+|+|+|++|.++++.++..|+++|++++
T Consensus 144 ~~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al~~~------~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~ 217 (398)
T 1kol_A 144 ADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAVTA------GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGD 217 (398)
T ss_dssp HHHHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHHHHT------TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred hhCeEEECCCCcchhhhcccccccccHHHHHHHHHHHc------CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEc
Confidence 222222 22334566788887543 234789999999999999999999999998899999
Q ss_pred CCHHHHHHHHHHhCCcceeecccc-h-HH----hhc--CCCcEEEEcCCCC
Q 010322 278 RSEERVAAICEELNGVEIIYKPLS-E-ML----SCA--ADADVVFTSTASE 320 (513)
Q Consensus 278 Rs~~ra~~la~~~g~~~~~~~~~~-~-~~----~~l--~~aDVVI~AT~s~ 320 (513)
++++|. ++++++|. + .+...+ + +. +.. .++|+||+|++.+
T Consensus 218 ~~~~~~-~~a~~lGa-~-~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~~ 265 (398)
T 1kol_A 218 LNPARL-AHAKAQGF-E-IADLSLDTPLHEQIAALLGEPEVDCAVDAVGFE 265 (398)
T ss_dssp SCHHHH-HHHHHTTC-E-EEETTSSSCHHHHHHHHHSSSCEEEEEECCCTT
T ss_pred CCHHHH-HHHHHcCC-c-EEccCCcchHHHHHHHHhCCCCCCEEEECCCCc
Confidence 999887 67788885 2 222211 1 22 222 3699999999976
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.5e-09 Score=106.05 Aligned_cols=118 Identities=23% Similarity=0.267 Sum_probs=85.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhCCc-ceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRSEERVAAICEELNGV-EIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~-~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
..++++|||+|.||+.++.+|.. .+.++|.++||+ +++++++++... .+.+... ++.+++.++||||+||+++.|
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~~p 196 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRSTTP 196 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCSSC
T ss_pred CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCCCc
Confidence 57899999999999999999987 478899999999 777887764210 1122233 677778899999999999999
Q ss_pred CCChhhhhcCCchhhhcCCcEEEEeccC--C--CCCCcccccccCeEEEccCCHHHHHH
Q 010322 323 LFLKDHVQDLPPVEAAVGGLRLFIDISV--P--RNVGSCVADVETARVYNVDDLKEVVA 377 (513)
Q Consensus 323 vi~~~~l~~~~~~~~~~~g~~viiDlav--P--rdidp~v~~l~gv~ly~iDdl~~v~~ 377 (513)
++..++++. | .+++|++- | +++++.+.. ....+-+|++.++..
T Consensus 197 vl~~~~l~~---------G-~~V~~vGs~~p~~~El~~~~~~--~a~~v~vD~~~~~~~ 243 (313)
T 3hdj_A 197 LFAGQALRA---------G-AFVGAIGSSLPHTRELDDEALR--RARAVVVEWREQTLS 243 (313)
T ss_dssp SSCGGGCCT---------T-CEEEECCCSSTTCCCCCHHHHH--HCSEEEESCHHHHHH
T ss_pred ccCHHHcCC---------C-cEEEECCCCCCchhhcCHHHHh--cCCEEEECCHHHHHh
Confidence 988666532 2 57778752 4 577776643 222344777776543
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.9e-09 Score=112.56 Aligned_cols=160 Identities=15% Similarity=0.174 Sum_probs=107.2
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhc------hHH----HHHHHhHh--c------Ccccc---hhhHHHHHHHhhC
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILA------QVK----QVVKVGQG--V------VGFGR---NISGLFKHAISVG 211 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlg------Qvk----~A~~~a~~--~------~~~g~---~L~~lf~~ai~v~ 211 (513)
..|||+++.+.+|+++++.+-+|+..+.. .+. +.++.|.. . +.+|. ..++.|++++.++
T Consensus 63 v~GhE~~G~V~~vG~~v~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~~~~G~~aey~~v~ 142 (398)
T 2dph_A 63 VLGHEITGEVVEKGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVP 142 (398)
T ss_dssp BCCCCEEEEEEEECTTCCSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBSSCCCSSBSEEEES
T ss_pred ccCCceEEEEEEECCCCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccccCCCCceeeeeEEec
Confidence 57999999999999999999999998863 211 12333332 1 11121 1245565555554
Q ss_pred c----------cccccc-----cccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEE
Q 010322 212 K----------RVRTET-----NIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVV 276 (513)
Q Consensus 212 k----------~Vr~et-----~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~ 276 (513)
. .+..+. .....+.++++++++.+ ....|++|+|+|+|++|.++++.++..|+.+|+++
T Consensus 143 ~~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al~~~------~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~ 216 (398)
T 2dph_A 143 YADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGCVSA------GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVG 216 (398)
T ss_dssp SHHHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHHHHT------TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred cccCeEEECCCCCChhhhcchhhhhcCHHHHHHHHHHHc------CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 3 233232 22335677888887543 23479999999999999999999999999779999
Q ss_pred eCCHHHHHHHHHHhCCcceeeccc-chH-Hh----hc--CCCcEEEEcCCCCc
Q 010322 277 NRSEERVAAICEELNGVEIIYKPL-SEM-LS----CA--ADADVVFTSTASEA 321 (513)
Q Consensus 277 nRs~~ra~~la~~~g~~~~~~~~~-~~~-~~----~l--~~aDVVI~AT~s~~ 321 (513)
++++++. ++++++|. + .+... ++. .+ .. .++|+||+|++.+.
T Consensus 217 ~~~~~~~-~~a~~lGa-~-~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~~~ 266 (398)
T 2dph_A 217 DQNPERL-KLLSDAGF-E-TIDLRNSAPLRDQIDQILGKPEVDCGVDAVGFEA 266 (398)
T ss_dssp ESCHHHH-HHHHTTTC-E-EEETTSSSCHHHHHHHHHSSSCEEEEEECSCTTC
T ss_pred cCCHHHH-HHHHHcCC-c-EEcCCCcchHHHHHHHHhCCCCCCEEEECCCCcc
Confidence 9999887 67778875 2 22211 121 22 11 26999999999763
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=9e-10 Score=114.02 Aligned_cols=182 Identities=14% Similarity=0.134 Sum_probs=113.8
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH------H----HHHHHhHhcC----c---ccch----------------
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV------K----QVVKVGQGVV----G---FGRN---------------- 199 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv------k----~A~~~a~~~~----~---~g~~---------------- 199 (513)
..|||+++.+.+|+++++.+.+|+..+.... . +.++.|.... . .|..
T Consensus 64 v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~~~g~~~~~ 143 (376)
T 1e3i_A 64 VLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYH 143 (376)
T ss_dssp CCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBC
T ss_pred ccCccccEEEEEECCCCccCCCCCEEEECCcCCCCCCccccCCCcccCcCcCccccccccccccccCccccccCCccccc
Confidence 5799999999999999999999999876321 1 1122222211 0 0110
Q ss_pred --hhHHHHHHHhhCcc--------cccccccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHc
Q 010322 200 --ISGLFKHAISVGKR--------VRTETNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAK 268 (513)
Q Consensus 200 --L~~lf~~ai~v~k~--------Vr~et~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~ 268 (513)
..+.|++++.++.. +..+.... ..+.+++++++. ... ....|++|+|+|+|++|.++++.++..
T Consensus 144 ~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~---~~~--~~~~g~~VlV~GaG~vG~~aiqlak~~ 218 (376)
T 1e3i_A 144 FMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAI---NTA--KVTPGSTCAVFGLGCVGLSAIIGCKIA 218 (376)
T ss_dssp CTTTCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHH---TTS--CCCTTCEEEEECCSHHHHHHHHHHHHT
T ss_pred ccCCccceeEEEeccccEEECCCCCCHHHhhhhccHHHHHHHHHH---Hhc--CCCCCCEEEEECCCHHHHHHHHHHHHc
Confidence 13667766655442 22222211 123445555432 111 234789999999999999999999999
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhCCcceeeccc---chHHhhc-----CCCcEEEEcCCCCccCCChhhhhcCCchhhhcC
Q 010322 269 GCTKMVVVNRSEERVAAICEELNGVEIIYKPL---SEMLSCA-----ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVG 340 (513)
Q Consensus 269 G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~---~~~~~~l-----~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~ 340 (513)
|+.+|+++++++++. ++++++|.. ..+... +++.+.+ .++|+||+|++.+..+ ...++.+. ++
T Consensus 219 Ga~~Vi~~~~~~~~~-~~a~~lGa~-~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G~~~~~--~~~~~~l~-----~~ 289 (376)
T 1e3i_A 219 GASRIIAIDINGEKF-PKAKALGAT-DCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTL--KAAVDCTV-----LG 289 (376)
T ss_dssp TCSEEEEECSCGGGH-HHHHHTTCS-EEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHH--HHHHHTBC-----TT
T ss_pred CCCeEEEEcCCHHHH-HHHHHhCCc-EEEccccccchHHHHHHHHhCCCccEEEECCCCHHHH--HHHHHHhh-----cC
Confidence 997799999999887 667888853 222221 1232221 3799999999985443 34455443 46
Q ss_pred -CcEEEEec
Q 010322 341 -GLRLFIDI 348 (513)
Q Consensus 341 -g~~viiDl 348 (513)
|+.++++.
T Consensus 290 ~G~iv~~G~ 298 (376)
T 1e3i_A 290 WGSCTVVGA 298 (376)
T ss_dssp TCEEEECCC
T ss_pred CCEEEEECC
Confidence 76776665
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-09 Score=112.42 Aligned_cols=162 Identities=18% Similarity=0.255 Sum_probs=107.0
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch------H----HHHHHHhHhcCcccchhhHHHHHHHhhCcc--------c
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ------V----KQVVKVGQGVVGFGRNISGLFKHAISVGKR--------V 214 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ------v----k~A~~~a~~~~~~g~~L~~lf~~ai~v~k~--------V 214 (513)
..|||+++.+.+|+++++.+-+|+..+... + .+.++.|......|...++.|++++.++.. +
T Consensus 76 v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~iP~~~ 155 (359)
T 1h2b_A 76 TLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDI 155 (359)
T ss_dssp ECCCCEEEEEEEECTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTC
T ss_pred ecCcCceEEEEEECCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccccccCCCCcccceEEechHhEEECCCCC
Confidence 579999999999999999999999985421 1 123344444444444456777776665542 2
Q ss_pred cccccccCCCchH----HHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 010322 215 RTETNIAAGAVSV----SSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEE 289 (513)
Q Consensus 215 r~et~i~~~~~Sv----a~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~ 289 (513)
..+.....+|+++ +++++.... . ....|++|+|+|+|++|.++++.++.. |+ +|+++++++++. +++++
T Consensus 156 ~~~~aa~~~~l~~~~~ta~~al~~~~--~--~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~~~~~~~~~-~~~~~ 229 (359)
T 1h2b_A 156 SREKLVEMAPLADAGITAYRAVKKAA--R--TLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIALDVKEEKL-KLAER 229 (359)
T ss_dssp CHHHHHHTGGGGTHHHHHHHHHHHHH--T--TCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEEEESSHHHH-HHHHH
T ss_pred CHHHHhhccchhhhHHHHHHHHHhhc--c--CCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHH-HHHHH
Confidence 2222221123443 455554310 1 234789999999999999999999999 98 599999999887 66778
Q ss_pred hCCcceeecccch----HHhhc--CCCcEEEEcCCCCc
Q 010322 290 LNGVEIIYKPLSE----MLSCA--ADADVVFTSTASEA 321 (513)
Q Consensus 290 ~g~~~~~~~~~~~----~~~~l--~~aDVVI~AT~s~~ 321 (513)
+|.. ..+...++ +.+.. .++|+||+|++.+.
T Consensus 230 lGa~-~vi~~~~~~~~~v~~~~~g~g~Dvvid~~G~~~ 266 (359)
T 1h2b_A 230 LGAD-HVVDARRDPVKQVMELTRGRGVNVAMDFVGSQA 266 (359)
T ss_dssp TTCS-EEEETTSCHHHHHHHHTTTCCEEEEEESSCCHH
T ss_pred hCCC-EEEeccchHHHHHHHHhCCCCCcEEEECCCCch
Confidence 8853 22222111 22222 26999999999864
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=98.86 E-value=9.6e-10 Score=113.72 Aligned_cols=182 Identities=13% Similarity=0.128 Sum_probs=113.8
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCcc---cc------------------hhh
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVGF---GR------------------NIS 201 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~~---g~------------------~L~ 201 (513)
..|||+++.+.+|+++++.+-+|+..+.... .+.++.|.+.... |. .-+
T Consensus 64 v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~ 143 (374)
T 2jhf_A 64 IAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGT 143 (374)
T ss_dssp CCCCSEEEEEEEECTTCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTT
T ss_pred ccCcCceEEEEEECCCCCCCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccccCCcccccccccccccccCC
Confidence 5799999999999999999999999876421 1122233322110 11 013
Q ss_pred HHHHHHHhhCc--------ccccccccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCe
Q 010322 202 GLFKHAISVGK--------RVRTETNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTK 272 (513)
Q Consensus 202 ~lf~~ai~v~k--------~Vr~et~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~ 272 (513)
+.|++++.++. .+..+.... ..+.+++++++. ... ....|++|+|+|+|++|.++++.++..|+.+
T Consensus 144 G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~---~~~--~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~ 218 (374)
T 2jhf_A 144 STFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAV---KVA--KVTQGSTCAVFGLGGVGLSVIMGCKAAGAAR 218 (374)
T ss_dssp CCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHH---TTT--CCCTTCEEEEECCSHHHHHHHHHHHHTTCSE
T ss_pred ccCeeEEEEchHHeEECCCCCCHHHhhhhccHHHHHHHHHH---hcc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence 66766665544 222222221 123445554432 111 2347899999999999999999999999977
Q ss_pred EEEEeCCHHHHHHHHHHhCCcceeeccc---chHHhhc-----CCCcEEEEcCCCCccCCChhhhhcCCchhhhcC-CcE
Q 010322 273 MVVVNRSEERVAAICEELNGVEIIYKPL---SEMLSCA-----ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVG-GLR 343 (513)
Q Consensus 273 V~v~nRs~~ra~~la~~~g~~~~~~~~~---~~~~~~l-----~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~-g~~ 343 (513)
|+++++++++. ++++++|.. ..+... +++.+.+ .++|+||+|++.+..+ ...++.+. ++ |+.
T Consensus 219 Vi~~~~~~~~~-~~~~~lGa~-~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~--~~~~~~l~-----~~~G~i 289 (374)
T 2jhf_A 219 IIGVDINKDKF-AKAKEVGAT-ECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTM--VTALSCCQ-----EAYGVS 289 (374)
T ss_dssp EEEECSCGGGH-HHHHHTTCS-EEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHH--HHHHHHBC-----TTTCEE
T ss_pred EEEEcCCHHHH-HHHHHhCCc-eEecccccchhHHHHHHHHhCCCCcEEEECCCCHHHH--HHHHHHhh-----cCCcEE
Confidence 99999999888 667788753 222221 1222221 2699999999985443 34454443 36 766
Q ss_pred EEEec
Q 010322 344 LFIDI 348 (513)
Q Consensus 344 viiDl 348 (513)
++++.
T Consensus 290 v~~G~ 294 (374)
T 2jhf_A 290 VIVGV 294 (374)
T ss_dssp EECSC
T ss_pred EEecc
Confidence 66664
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=9.9e-10 Score=113.65 Aligned_cols=182 Identities=12% Similarity=0.148 Sum_probs=113.1
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH------H----HHHHHhHhcCcc---cc------------------hhh
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV------K----QVVKVGQGVVGF---GR------------------NIS 201 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv------k----~A~~~a~~~~~~---g~------------------~L~ 201 (513)
..|||+++.+.+|+++++.+.+|+..+.... . +.++.|.+.... |. ..+
T Consensus 65 v~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~ 144 (374)
T 1cdo_A 65 VLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGT 144 (374)
T ss_dssp ECCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGT
T ss_pred ccCccceEEEEEECCCCccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccccCCccccccCCcccccccCC
Confidence 5799999999999999999999999876421 1 112222211100 10 013
Q ss_pred HHHHHHHhhCc--------ccccccccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCe
Q 010322 202 GLFKHAISVGK--------RVRTETNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTK 272 (513)
Q Consensus 202 ~lf~~ai~v~k--------~Vr~et~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~ 272 (513)
+.|++++.++. .+..+.... ..+..++++++. ... ....|++|+|+|+|++|.++++.++..|+.+
T Consensus 145 G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~---~~~--~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~ 219 (374)
T 1cdo_A 145 STFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAV---NTA--KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKR 219 (374)
T ss_dssp CCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHH---TTT--CCCTTCEEEEECCSHHHHHHHHHHHHTTCSE
T ss_pred ccceeEEEEchhheEECCCCCCHHHHhhhccHHHHHHHHHH---hcc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence 56766665543 222222211 123444554431 111 2347899999999999999999999999977
Q ss_pred EEEEeCCHHHHHHHHHHhCCcceeeccc---chHHhhc-----CCCcEEEEcCCCCccCCChhhhhcCCchhhhcC-CcE
Q 010322 273 MVVVNRSEERVAAICEELNGVEIIYKPL---SEMLSCA-----ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVG-GLR 343 (513)
Q Consensus 273 V~v~nRs~~ra~~la~~~g~~~~~~~~~---~~~~~~l-----~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~-g~~ 343 (513)
|+++++++++. ++++++|.. ..+... +++.+.+ .++|+||+|++.+..+ ...++.+. ++ |+.
T Consensus 220 Vi~~~~~~~~~-~~~~~lGa~-~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~--~~~~~~l~-----~~~G~i 290 (374)
T 1cdo_A 220 IIAVDLNPDKF-EKAKVFGAT-DFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVM--RNALESCL-----KGWGVS 290 (374)
T ss_dssp EEEECSCGGGH-HHHHHTTCC-EEECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHHHH--HHHHHTBC-----TTTCEE
T ss_pred EEEEcCCHHHH-HHHHHhCCc-eEEeccccchhHHHHHHHHhCCCCCEEEECCCCHHHH--HHHHHHhh-----cCCcEE
Confidence 99999999888 667788753 222221 1232222 3799999999985443 34455443 46 766
Q ss_pred EEEec
Q 010322 344 LFIDI 348 (513)
Q Consensus 344 viiDl 348 (513)
+.++.
T Consensus 291 v~~G~ 295 (374)
T 1cdo_A 291 VLVGW 295 (374)
T ss_dssp EECSC
T ss_pred EEEcC
Confidence 66654
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-08 Score=103.64 Aligned_cols=117 Identities=17% Similarity=0.218 Sum_probs=84.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~-~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
...++++|||+|.||+.++..|.. .+..+|.++||+++++++++++++...+.+. .+++.+.+ ++|+||+||++..|
T Consensus 123 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~~p 200 (322)
T 1omo_A 123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSRKP 200 (322)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCSSC
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCCCc
Confidence 357899999999999999999987 4788999999999999999988752101233 56777788 99999999999999
Q ss_pred CCChhhhhcCCchhhhcCCcEEEEecc-C---CCCCCcccccccCeEEEccCCHHHH
Q 010322 323 LFLKDHVQDLPPVEAAVGGLRLFIDIS-V---PRNVGSCVADVETARVYNVDDLKEV 375 (513)
Q Consensus 323 vi~~~~l~~~~~~~~~~~g~~viiDla-v---Prdidp~v~~l~gv~ly~iDdl~~v 375 (513)
++..++++. | ..++|++ . ++++++.+.. ... +-+|+..++
T Consensus 201 v~~~~~l~~---------G-~~V~~ig~~~p~~~el~~~~~~--~a~-v~vD~~~~~ 244 (322)
T 1omo_A 201 VVKAEWVEE---------G-THINAIGADGPGKQELDVEILK--KAK-IVVDDLEQA 244 (322)
T ss_dssp CBCGGGCCT---------T-CEEEECSCCSTTCCCBCHHHHH--TEE-EEESCHHHH
T ss_pred eecHHHcCC---------C-eEEEECCCCCCCccccCHHHHh--cCe-EEECCHHHh
Confidence 887555432 2 5777774 2 3455554432 222 346665443
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=98.85 E-value=4.3e-08 Score=101.28 Aligned_cols=124 Identities=17% Similarity=0.282 Sum_probs=88.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec--ccchHHhhcCCCcEEEEcCCCCc
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK--PLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~--~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
+.+++|+|+|+|++|+.+++.|+..|+ +|+++||++++++.+.+.++. .+... ..+++.+.+.++|+||+||+.+.
T Consensus 165 l~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~ 242 (361)
T 1pjc_A 165 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS-RVELLYSNSAEIETAVAEADLLIGAVLVPG 242 (361)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG-GSEEEECCHHHHHHHHHTCSEEEECCCCTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc-eeEeeeCCHHHHHHHHcCCCEEEECCCcCC
Confidence 567999999999999999999999999 799999999998776655432 11111 22355566779999999998765
Q ss_pred ----cCCChhhhhcCCchhhhcCCcEEEEeccCCC----------CCCcccccccCeEEEccCCHHHHH
Q 010322 322 ----PLFLKDHVQDLPPVEAAVGGLRLFIDISVPR----------NVGSCVADVETARVYNVDDLKEVV 376 (513)
Q Consensus 322 ----~vi~~~~l~~~~~~~~~~~g~~viiDlavPr----------didp~v~~l~gv~ly~iDdl~~v~ 376 (513)
.++..+.++.+. ++ .+++|++.++ ++++......++.+|.++++...+
T Consensus 243 ~~~~~li~~~~~~~~~-----~g--~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~ 304 (361)
T 1pjc_A 243 RRAPILVPASLVEQMR-----TG--SVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAV 304 (361)
T ss_dssp SSCCCCBCHHHHTTSC-----TT--CEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGC
T ss_pred CCCCeecCHHHHhhCC-----CC--CEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhh
Confidence 234555665543 22 4788997642 344434445788899988876643
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1e-09 Score=113.36 Aligned_cols=182 Identities=15% Similarity=0.191 Sum_probs=112.1
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH------H----HHHHHhHhc------Ccc--c-------------chhh
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV------K----QVVKVGQGV------VGF--G-------------RNIS 201 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv------k----~A~~~a~~~------~~~--g-------------~~L~ 201 (513)
..|||+++.+.+|+++++.+.+|+..+.... . +.++.|.+. |.. | ..-+
T Consensus 63 v~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~ 142 (373)
T 2fzw_A 63 ILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGT 142 (373)
T ss_dssp CCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTT
T ss_pred cccccccEEEEEECCCCCCCCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccccCCcccccccccccccccCC
Confidence 5799999999999999999999999876421 1 111112111 100 0 0013
Q ss_pred HHHHHHHhhCc--------ccccccccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCe
Q 010322 202 GLFKHAISVGK--------RVRTETNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTK 272 (513)
Q Consensus 202 ~lf~~ai~v~k--------~Vr~et~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~ 272 (513)
+.|++++.++. .+..+.... ..+..++++++. ... ....|++|+|+|+|++|.++++.++..|+.+
T Consensus 143 G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~---~~~--~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~ 217 (373)
T 2fzw_A 143 STFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAV---NTA--KLEPGSVCAVFGLGGVGLAVIMGCKVAGASR 217 (373)
T ss_dssp CCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHH---TTT--CCCTTCEEEEECCSHHHHHHHHHHHHHTCSE
T ss_pred ccceeEEEEchhheEECCCCCCHHHHhhhccHHHHHHHHHH---hhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence 55666555543 222222211 123445554431 111 2347899999999999999999999999977
Q ss_pred EEEEeCCHHHHHHHHHHhCCcceeeccc---chHHhhc-----CCCcEEEEcCCCCccCCChhhhhcCCchhhhcC-CcE
Q 010322 273 MVVVNRSEERVAAICEELNGVEIIYKPL---SEMLSCA-----ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVG-GLR 343 (513)
Q Consensus 273 V~v~nRs~~ra~~la~~~g~~~~~~~~~---~~~~~~l-----~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~-g~~ 343 (513)
|+++++++++. ++++++|.. ..+... +++.+.+ .++|+||+|++.+..+ ...++.+. ++ |+.
T Consensus 218 Vi~~~~~~~~~-~~~~~lGa~-~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g~~~~~--~~~~~~l~-----~~~G~i 288 (373)
T 2fzw_A 218 IIGVDINKDKF-ARAKEFGAT-ECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVM--RAALEACH-----KGWGVS 288 (373)
T ss_dssp EEEECSCGGGH-HHHHHHTCS-EEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHH--HHHHHTBC-----TTTCEE
T ss_pred EEEEcCCHHHH-HHHHHcCCc-eEeccccccccHHHHHHHHhCCCCCEEEECCCcHHHH--HHHHHhhc-----cCCcEE
Confidence 99999999887 667788853 222221 1222221 2799999999975443 34455443 46 767
Q ss_pred EEEec
Q 010322 344 LFIDI 348 (513)
Q Consensus 344 viiDl 348 (513)
+.++.
T Consensus 289 v~~G~ 293 (373)
T 2fzw_A 289 VVVGV 293 (373)
T ss_dssp EECSC
T ss_pred EEEec
Confidence 66664
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=9.3e-09 Score=108.58 Aligned_cols=184 Identities=14% Similarity=0.059 Sum_probs=108.0
Q ss_pred hhh--HHHHhc-CCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccc--------hhhHHHHHHHhhCccc
Q 010322 146 LCE--HRFLLY-NKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGR--------NISGLFKHAISVGKRV 214 (513)
Q Consensus 146 ~~~--~~~~~~-G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~--------~L~~lf~~ai~v~k~V 214 (513)
+++ .+|... |.++.+..|.|.. ...+.++..... .++.|. +-..+++.+-..-..+
T Consensus 90 mh~ka~lf~~~gGid~~yi~ldv~d------------~de~~~~v~~l~-~~f~GinvED~T~P~k~~il~~l~~avNt~ 156 (439)
T 2dvm_A 90 MEGKALLFKRFGGVDAFPIMIKEQE------------PNKFIDIVKAIA-PTFGGINLEDIASPKCFYILERLREELDIP 156 (439)
T ss_dssp HHHHHHHHHHHHCCEEEEEECSCCS------------HHHHHHHHHHTG-GGCSEEEECSCCTTHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhCCCCCeeeeeecCC------------HHHHHHHHHHhC-ccCcEEEEEeCCCchHHHHHHHHHHhcCEE
Confidence 556 458888 8999999999821 134444444433 233232 2222333322211111
Q ss_pred cc-cccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCC--CeEEEEe----CC--HHHHHH
Q 010322 215 RT-ETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGC--TKMVVVN----RS--EERVAA 285 (513)
Q Consensus 215 r~-et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~--~~V~v~n----Rs--~~ra~~ 285 (513)
.. +..-+.+ ++.+.++..+-+..+ .++.+++|+|+|||++|++++..|...|+ ++|+++| |+ ..+.+.
T Consensus 157 vf~dD~~gtg--ntd~aG~~~AL~~~g-~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~ 233 (439)
T 2dvm_A 157 VFHDDQQGTA--AVVLAGLLNALKVVG-KKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLD 233 (439)
T ss_dssp EEEHHHHHHH--HHHHHHHHHHHHHHT-CCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSC
T ss_pred EEeCCCcEEe--ehHHHHHHHHHHHhC-CCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccc
Confidence 11 1111111 333444433333332 36789999999999999999999999999 7899999 87 222212
Q ss_pred ---HH---HHhCCcceeecccchHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 286 ---IC---EELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 286 ---la---~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
+. ..+.........+.++.+.+.++|++|+||+.+..+++++.++.+. ...+++|++.|+
T Consensus 234 ~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~aDVlInaT~~~~G~~~~e~v~~m~-------~~~iVfDLynP~ 299 (439)
T 2dvm_A 234 LEKLFPYRGWLLKKTNGENIEGGPQEALKDADVLISFTRPGPGVIKPQWIEKMN-------EDAIVFPLANPV 299 (439)
T ss_dssp HHHHSTTCHHHHTTSCTTCCCSSHHHHHTTCSEEEECSCCCSSSSCHHHHTTSC-------TTCEEEECCSSS
T ss_pred hhHHHHHHHHHhhccccccccccHHHHhccCCEEEEcCCCccCCCChHHHHhcC-------CCCEEEECCCCC
Confidence 21 2221100000124567777889999999999965666666665542 235889999887
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2e-09 Score=109.89 Aligned_cols=182 Identities=13% Similarity=0.172 Sum_probs=118.7
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchH-----------HHHHHHhHhcCcccchhhHHHHHHHhhCcc-------
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQV-----------KQVVKVGQGVVGFGRNISGLFKHAISVGKR------- 213 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQv-----------k~A~~~a~~~~~~g~~L~~lf~~ai~v~k~------- 213 (513)
...|||+++.+.+|+++++.+.+|++...... ...++.|......+...++.|++++.++..
T Consensus 56 ~i~GhE~aG~V~~vG~~V~~~~~GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ae~~~~~~~~~~~iP~ 135 (348)
T 4eez_A 56 TVLGHEGIGIVKEIGADVSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGYSVDGGMAEEAIVVADYAVKVPD 135 (348)
T ss_dssp CBCCSEEEEEEEEECTTCCSCCTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGSCBCCT
T ss_pred cccceeEEEEEEEECceeeecccCCeEeecccccccCccccccCCcccccccccccccccCCcceeeccccccceeecCC
Confidence 35799999999999999999999999875321 112333444444555567777776655542
Q ss_pred -ccccccc-cCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC
Q 010322 214 -VRTETNI-AAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN 291 (513)
Q Consensus 214 -Vr~et~i-~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g 291 (513)
+..+... ...+..+++.+++.+ +..+|++|+|+|+|++|..++..++..|..+|++++++++|. ++++++|
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~------~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~-~~~~~~G 208 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVS------GVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKL-NLAKKIG 208 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHH------TCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHH-HHHHHTT
T ss_pred CCCHHHHhhcccceeeEEeeeccc------CCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHh-hhhhhcC
Confidence 1111111 112334455665544 245799999999999999999999988666899999999987 7888888
Q ss_pred Ccceeeccc-ch----HHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 292 GVEIIYKPL-SE----MLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 292 ~~~~~~~~~-~~----~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.. ..+... ++ +.+.. .++|++|++++++..+ ...+..+. ++|..+++.+
T Consensus 209 a~-~~i~~~~~~~~~~v~~~t~g~g~d~~~~~~~~~~~~--~~~~~~l~-----~~G~~v~~g~ 264 (348)
T 4eez_A 209 AD-VTINSGDVNPVDEIKKITGGLGVQSAIVCAVARIAF--EQAVASLK-----PMGKMVAVAV 264 (348)
T ss_dssp CS-EEEEC-CCCHHHHHHHHTTSSCEEEEEECCSCHHHH--HHHHHTEE-----EEEEEEECCC
T ss_pred Ce-EEEeCCCCCHHHHhhhhcCCCCceEEEEeccCcchh--heeheeec-----CCceEEEEec
Confidence 63 222221 12 22222 3689999999987654 34444432 3566666654
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-07 Score=94.71 Aligned_cols=121 Identities=18% Similarity=0.268 Sum_probs=90.1
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
..+.|++|+|||+|.||+.+++.|...|+ +|+++||++++.+.+. +++. ......++.+.+.++|+||.+++.
T Consensus 153 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~-~~g~---~~~~~~~l~~~l~~aDvVi~~~p~-- 225 (300)
T 2rir_A 153 YTIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARIT-EMGL---VPFHTDELKEHVKDIDICINTIPS-- 225 (300)
T ss_dssp SCSTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH-HTTC---EEEEGGGHHHHSTTCSEEEECCSS--
T ss_pred CCCCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH-HCCC---eEEchhhHHHHhhCCCEEEECCCh--
Confidence 46899999999999999999999999998 6999999998775544 3442 233345677788999999999997
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEeccC-CCCCCcccccccCeEEEccCCHHHHH
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDISV-PRNVGSCVADVETARVYNVDDLKEVV 376 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDlav-Prdidp~v~~l~gv~ly~iDdl~~v~ 376 (513)
.+++.+.+..+. ...++||++. |.+++.......|+.+|+++.+...+
T Consensus 226 ~~i~~~~~~~mk-------~g~~lin~a~g~~~~~~~~a~~~G~~~i~~pg~~g~v 274 (300)
T 2rir_A 226 MILNQTVLSSMT-------PKTLILDLASRPGGTDFKYAEKQGIKALLAPGLPGIV 274 (300)
T ss_dssp CCBCHHHHTTSC-------TTCEEEECSSTTCSBCHHHHHHHTCEEEECCCHHHHH
T ss_pred hhhCHHHHHhCC-------CCCEEEEEeCCCCCcCHHHHHHCCCEEEECCCCCCcH
Confidence 456666665542 2368999984 54443333334588888888877755
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.1e-09 Score=110.69 Aligned_cols=181 Identities=15% Similarity=0.185 Sum_probs=112.4
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch-------HH----HHHHHhHhcC--c-----ccchhhHHHHHHHhhCcc-
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ-------VK----QVVKVGQGVV--G-----FGRNISGLFKHAISVGKR- 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ-------vk----~A~~~a~~~~--~-----~g~~L~~lf~~ai~v~k~- 213 (513)
..|||+++.+.+|+++++.+.+|+..+... +. +.++.|.... . .|...++.|++++.++..
T Consensus 66 v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~ 145 (357)
T 2cf5_A 66 VPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKF 145 (357)
T ss_dssp CCCCEEEEEEEEECSSCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCTTSCBCCCSSBSCEEEEGGG
T ss_pred ecCcceeEEEEEECCCCCCCCCCCEEEEcCCCCCCCCChHHhCcCcccCCCccccccccccCCCCCCCccccEEEechhh
Confidence 579999999999999999999999987532 11 1223332110 0 011235667776665542
Q ss_pred -------cccccccc-CCCchHHHHHHHHHHhhCCCCCC-CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Q 010322 214 -------VRTETNIA-AGAVSVSSAAVELALMKLPESSH-ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVA 284 (513)
Q Consensus 214 -------Vr~et~i~-~~~~Sva~~Av~la~~~~~~~~l-~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~ 284 (513)
+..+.... ..+..++++++..+ +.. +|++|+|+|+|++|.++++.++..|+ +|+++++++++.+
T Consensus 146 ~~~~P~~ls~~~aa~l~~~~~ta~~~l~~~------~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~ 218 (357)
T 2cf5_A 146 VVKIPEGMAVEQAAPLLCAGVTVYSPLSHF------GLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKRE 218 (357)
T ss_dssp EEECCSSCCHHHHTGGGTHHHHHHHHHHHT------STTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHH
T ss_pred EEECcCCCCHHHhhhhhhhHHHHHHHHHhc------CCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHH
Confidence 22222111 11223445554432 234 78999999999999999999999999 5999999988874
Q ss_pred HHHHHhCCcceeeccc--chHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 285 AICEELNGVEIIYKPL--SEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 285 ~la~~~g~~~~~~~~~--~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.+.+++|... .+... +.+.+...++|+||+|++.+..+ ...++.+. ++|+.+.++.
T Consensus 219 ~~~~~lGa~~-vi~~~~~~~~~~~~~g~D~vid~~g~~~~~--~~~~~~l~-----~~G~iv~~G~ 276 (357)
T 2cf5_A 219 EALQDLGADD-YVIGSDQAKMSELADSLDYVIDTVPVHHAL--EPYLSLLK-----LDGKLILMGV 276 (357)
T ss_dssp HHHTTSCCSC-EEETTCHHHHHHSTTTEEEEEECCCSCCCS--HHHHTTEE-----EEEEEEECSC
T ss_pred HHHHHcCCce-eeccccHHHHHHhcCCCCEEEECCCChHHH--HHHHHHhc-----cCCEEEEeCC
Confidence 4443787532 22221 12333345799999999986544 34454432 3565666554
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=6.2e-10 Score=114.91 Aligned_cols=180 Identities=15% Similarity=0.198 Sum_probs=112.3
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch------H----HHHHHHhHhcCcc--cch-hhHHHHHHHhhCc-------
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ------V----KQVVKVGQGVVGF--GRN-ISGLFKHAISVGK------- 212 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ------v----k~A~~~a~~~~~~--g~~-L~~lf~~ai~v~k------- 212 (513)
..|||+++.+.+ ++ +.+.+|+..+... + .+.++.|...... |.. .++.|++++.++.
T Consensus 63 v~G~E~~G~V~~--~~-~~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP 139 (366)
T 2cdc_A 63 VLGHEAIGVVEE--SY-HGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYLVKIP 139 (366)
T ss_dssp ECCSEEEEEECS--CC-SSCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCEEETTBEECCSCBSEEEECGGGEEEEC
T ss_pred cCCcceEEEEEe--CC-CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCcccCCccCCCCceeEEEEechHHeEECc
Confidence 579999999999 77 8899999887632 1 1233444433333 322 3566766655543
Q ss_pred -cccccccccCCCchHHHHHHHHHH--h-hCCCCCCC-------CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-
Q 010322 213 -RVRTETNIAAGAVSVSSAAVELAL--M-KLPESSHA-------TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE- 280 (513)
Q Consensus 213 -~Vr~et~i~~~~~Sva~~Av~la~--~-~~~~~~l~-------g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~- 280 (513)
.+. +.+....+.+++++++..+. . .+ ..++ |++|+|+|+|++|.++++.++..|+ +|+++++++
T Consensus 140 ~~l~-~~Aal~~~~~ta~~al~~~~~~~~~~--~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~ 215 (366)
T 2cdc_A 140 KSIE-DIGILAQPLADIEKSIEEILEVQKRV--PVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREP 215 (366)
T ss_dssp GGGT-TTGGGHHHHHHHHHHHHHHHHHGGGS--SCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCC
T ss_pred CCcc-hhhhhcCcHHHHHHHHHhhhhcccCc--cccccccccCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCcc
Confidence 344 33333346667777775211 1 11 0014 9999999999999999999999999 699999998
Q ss_pred --HHHHHHHHHhCCcceeecc---cchHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 281 --ERVAAICEELNGVEIIYKP---LSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 281 --~ra~~la~~~g~~~~~~~~---~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
++. ++++++|... +.. .+.+.+.-.++|+||+|++.+..++ ...+..+. ++|..++++.
T Consensus 216 ~~~~~-~~~~~~ga~~--v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~-~~~~~~l~-----~~G~iv~~g~ 279 (366)
T 2cdc_A 216 TEVEQ-TVIEETKTNY--YNSSNGYDKLKDSVGKFDVIIDATGADVNIL-GNVIPLLG-----RNGVLGLFGF 279 (366)
T ss_dssp CHHHH-HHHHHHTCEE--EECTTCSHHHHHHHCCEEEEEECCCCCTHHH-HHHGGGEE-----EEEEEEECSC
T ss_pred chHHH-HHHHHhCCce--echHHHHHHHHHhCCCCCEEEECCCChHHHH-HHHHHHHh-----cCCEEEEEec
Confidence 777 6777887521 210 0111111157999999999864321 22333332 3565666654
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-09 Score=111.44 Aligned_cols=180 Identities=13% Similarity=0.156 Sum_probs=114.5
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch-------H----HHHHHHhHhcCcccchhhHHHHHHHhhCc--------c
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ-------V----KQVVKVGQGVVGFGRNISGLFKHAISVGK--------R 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ-------v----k~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~ 213 (513)
..|||+++.+.+|+++++++-+|+..+... + .+.++.|......|...++.|++++.++. .
T Consensus 63 v~G~E~~G~V~~vG~~v~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~ 142 (347)
T 2hcy_A 63 VGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYTHDGSFQQYATADAVQAAHIPQG 142 (347)
T ss_dssp ECCCEEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEEBTTTBCCSSBSEEEEETTTSEEECTT
T ss_pred ccCccceEEEEEECCCCCCCcCCCEEEEecCCCCCCCChhhhCCCcccCccccccccCCCCcceeEEEeccccEEECCCC
Confidence 579999999999999999999999987532 1 12344555444445444677777665544 2
Q ss_pred cccccccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC
Q 010322 214 VRTETNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN 291 (513)
Q Consensus 214 Vr~et~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g 291 (513)
+..+.... ..+..++++++..+ ....|++|+|+|+ |++|.++++.++..|+ +|++++|++++. ++++++|
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~------~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~-~~~~~~g 214 (347)
T 2hcy_A 143 TDLAQVAPILCAGITVYKALKSA------NLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKE-ELFRSIG 214 (347)
T ss_dssp CCHHHHGGGGTHHHHHHHHHHTT------TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHH-HHHHHTT
T ss_pred CCHHHHHHHhhhHHHHHHHHHhc------CCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHH-HHHHHcC
Confidence 22222211 12233456665432 2347899999999 9999999999999998 699999998887 5667776
Q ss_pred Ccceeecc--cchHHhhc-----CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 292 GVEIIYKP--LSEMLSCA-----ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 292 ~~~~~~~~--~~~~~~~l-----~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.. ..+.. .+++.+.+ .++|+||++++.+..+ ...+..+. ++|+.+.++.
T Consensus 215 ~~-~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~~~--~~~~~~l~-----~~G~iv~~g~ 270 (347)
T 2hcy_A 215 GE-VFIDFTKEKDIVGAVLKATDGGAHGVINVSVSEAAI--EASTRYVR-----ANGTTVLVGM 270 (347)
T ss_dssp CC-EEEETTTCSCHHHHHHHHHTSCEEEEEECSSCHHHH--HHHTTSEE-----EEEEEEECCC
T ss_pred Cc-eEEecCccHhHHHHHHHHhCCCCCEEEECCCcHHHH--HHHHHHHh-----cCCEEEEEeC
Confidence 42 22221 12332222 1699999999874332 33333332 3455555543
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.6e-09 Score=109.32 Aligned_cols=179 Identities=18% Similarity=0.239 Sum_probs=114.4
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhch------H----HHHHHHhHhcCcccchhhHHHHHHHhhCc-c--cccccc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQ------V----KQVVKVGQGVVGFGRNISGLFKHAISVGK-R--VRTETN 219 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQ------v----k~A~~~a~~~~~~g~~L~~lf~~ai~v~k-~--Vr~et~ 219 (513)
..|||+++.+.+|+++++.+.+|+..+... + .+.++.|.+....|...++.|++++.++. . ++- .+
T Consensus 65 i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~ 143 (347)
T 1jvb_A 65 TLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKL-RR 143 (347)
T ss_dssp ECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEEC-SS
T ss_pred cccccceEEEEEECCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCcccccccccCCCcceeEEEecCccceEEe-CC
Confidence 579999999999999999999999985421 1 12344454444445445677877777765 2 111 22
Q ss_pred ccC---CCch----HHHHHHHHHHhhCCCCCCCCCeEEEEccc-HHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHh
Q 010322 220 IAA---GAVS----VSSAAVELALMKLPESSHATARMLVIGAG-KMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEEL 290 (513)
Q Consensus 220 i~~---~~~S----va~~Av~la~~~~~~~~l~g~~VlVIGaG-~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~ 290 (513)
++. .+++ ++++++..+ ...+|++|+|+|+| ++|.++++.++.. |+ +|+++++++++. ++++++
T Consensus 144 ~~~~~aa~l~~~~~ta~~~l~~~------~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~-~~~~~~ 215 (347)
T 1jvb_A 144 LNAVEAAPLTCSGITTYRAVRKA------SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAV-EAAKRA 215 (347)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHHT------TCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHH-HHHHHH
T ss_pred CCHHHcccchhhHHHHHHHHHhc------CCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHH-HHHHHh
Confidence 211 1333 356665432 23478999999998 9999999999999 98 599999999887 455677
Q ss_pred CCcceeeccc-ch----HHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 291 NGVEIIYKPL-SE----MLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 291 g~~~~~~~~~-~~----~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
|.. ..+... .+ +.+.. .++|+||++++.+..+ ...++.+. ++|+.+.++.
T Consensus 216 g~~-~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~--~~~~~~l~-----~~G~iv~~g~ 272 (347)
T 1jvb_A 216 GAD-YVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTL--SVYPKALA-----KQGKYVMVGL 272 (347)
T ss_dssp TCS-EEEETTTSCHHHHHHHHTTTSCEEEEEESCCCHHHH--TTGGGGEE-----EEEEEEECCS
T ss_pred CCC-EEecCCCccHHHHHHHHhcCCCceEEEECCCCHHHH--HHHHHHHh-----cCCEEEEECC
Confidence 742 222211 12 22333 3799999999976332 23343332 3565555553
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.6e-07 Score=97.65 Aligned_cols=126 Identities=20% Similarity=0.286 Sum_probs=91.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcc-eeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVE-IIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~-~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.+.+++|+|+|+|.||+.+++.++..|+ +|++++|++++++.+.+.++... .......++.+.+.++|+||+|++.|.
T Consensus 165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~ 243 (377)
T 2vhw_A 165 GVEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPG 243 (377)
T ss_dssp TBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCC
Confidence 4689999999999999999999999999 69999999998866665565421 111123456666778999999997664
Q ss_pred ----cCCChhhhhcCCchhhhcCCcEEEEeccCCC----------CCCcccccccCeEEEccCCHHHHH
Q 010322 322 ----PLFLKDHVQDLPPVEAAVGGLRLFIDISVPR----------NVGSCVADVETARVYNVDDLKEVV 376 (513)
Q Consensus 322 ----~vi~~~~l~~~~~~~~~~~g~~viiDlavPr----------didp~v~~l~gv~ly~iDdl~~v~ 376 (513)
.++..+.++.+. ++ .+++|+++++ +++..+...+++.+|..+++....
T Consensus 244 ~~t~~li~~~~l~~mk-----~g--~~iV~va~~~Ggv~e~~ep~~~~~~~~~~~~v~i~~~phl~~~~ 305 (377)
T 2vhw_A 244 AKAPKLVSNSLVAHMK-----PG--AVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFYCVANMPASV 305 (377)
T ss_dssp SCCCCCBCHHHHTTSC-----TT--CEEEEGGGGTTCSBTTCCCBCSSSCEEEETTEEEECBTTGGGGS
T ss_pred CCCcceecHHHHhcCC-----CC--cEEEEEecCCCCccccccCCCCCCCEEEECCEEEEecCCcchhh
Confidence 345666776653 22 5788988543 334445567889988888877643
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-07 Score=98.29 Aligned_cols=141 Identities=18% Similarity=0.224 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhhCCC---------CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceee
Q 010322 227 VSSAAVELALMKLPE---------SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIY 297 (513)
Q Consensus 227 va~~Av~la~~~~~~---------~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~ 297 (513)
-||.|+..+...++. +.+.+.+|+|||+|.+|..+++.++..|+ +|+++|+++.+.+.+ +.+|...+.+
T Consensus 162 AGy~Av~~aa~~l~~~~~~l~t~~g~v~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~-~~~G~~~~~~ 239 (405)
T 4dio_A 162 AGYQAVIDAAYEYDRALPMMMTAAGTVPAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQV-ASLGAKFIAV 239 (405)
T ss_dssp HHHHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHH-HHTTCEECCC
T ss_pred HHHHHHHHHHHHhHhhhchhhccCCCcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH-HHcCCceeec
Confidence 456677666555431 24578999999999999999999999999 599999999887544 4566410000
Q ss_pred --------------c----------ccchHHhhcCCCcEEEEcCCCC---c-cCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 298 --------------K----------PLSEMLSCAADADVVFTSTASE---A-PLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 298 --------------~----------~~~~~~~~l~~aDVVI~AT~s~---~-~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
. ...++.+.+.++||||+|...| . .++++++++.+. ...++||+|
T Consensus 240 ~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk-------~GsVIVDvA 312 (405)
T 4dio_A 240 EDEEFKAAETAGGYAKEMSGEYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMK-------PGSVVVDLA 312 (405)
T ss_dssp CC-----------------CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSC-------TTCEEEETT
T ss_pred ccccccccccccchhhhcchhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCC-------CCCEEEEEe
Confidence 0 0124566778999999995333 3 367888888764 227999998
Q ss_pred CCC--CCCc----ccccccCeEEEccCCHHHHH
Q 010322 350 VPR--NVGS----CVADVETARVYNVDDLKEVV 376 (513)
Q Consensus 350 vPr--didp----~v~~l~gv~ly~iDdl~~v~ 376 (513)
..+ +++. ......|+.+|-+++++..+
T Consensus 313 ~d~GG~~e~t~~~~~~~~~GV~~~gv~nlP~~v 345 (405)
T 4dio_A 313 VERGGNIEGAEAGKVTEVGGVRIVGHLNVAGRI 345 (405)
T ss_dssp GGGTCSBTTCCTTEEEEETTEEEEECSSGGGGG
T ss_pred CCCCCCccccCCCCeEEECCEEEEEeCCCCccC
Confidence 642 3432 11234799999999988754
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-07 Score=98.74 Aligned_cols=125 Identities=17% Similarity=0.310 Sum_probs=85.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee--ecccchHHhhcCCCcEEEEcCCCC
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII--YKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~--~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+.+++|+|+|+|.+|+.+++.|+..|+ +|++++|++++.+.+.+.++.. +. ....+++.+.+.++|+||+|++.+
T Consensus 163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~~-~~~~~~~~~~l~~~~~~~DvVi~~~g~~ 240 (369)
T 2eez_A 163 GVAPASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGGR-VITLTATEANIKKSVQHADLLIGAVLVP 240 (369)
T ss_dssp BBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTS-EEEEECCHHHHHHHHHHCSEEEECCC--
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCce-EEEecCCHHHHHHHHhCCCEEEECCCCC
Confidence 3678999999999999999999999999 6999999999886666556532 11 112345666677899999999876
Q ss_pred c----cCCChhhhhcCCchhhhcCCcEEEEeccCC----------CCCCcccccccCeEEEccCCHHHHH
Q 010322 321 A----PLFLKDHVQDLPPVEAAVGGLRLFIDISVP----------RNVGSCVADVETARVYNVDDLKEVV 376 (513)
Q Consensus 321 ~----~vi~~~~l~~~~~~~~~~~g~~viiDlavP----------rdidp~v~~l~gv~ly~iDdl~~v~ 376 (513)
. .++..+.+..+. ++ -++||++++ .++++.....+++.+|.++++...+
T Consensus 241 ~~~~~~li~~~~l~~mk-----~g--g~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v~~lp~~~ 303 (369)
T 2eez_A 241 GAKAPKLVTRDMLSLMK-----EG--AVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGVANMPGAV 303 (369)
T ss_dssp -----CCSCHHHHTTSC-----TT--CEEEECC-------------------CEETTEEEECCSCSGGGS
T ss_pred ccccchhHHHHHHHhhc-----CC--CEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEeeCCcchhc
Confidence 3 345666676553 23 467888753 2344444556889999999877654
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=98.71 E-value=3.4e-08 Score=97.99 Aligned_cols=102 Identities=23% Similarity=0.296 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHhhCCCCCCCCCeEEEEcccHH-HHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhCCcceeecccch
Q 010322 226 SVSSAAVELALMKLPESSHATARMLVIGAGKM-GKLVIKHLVAK--GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSE 302 (513)
Q Consensus 226 Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~m-G~~ia~~L~~~--G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~ 302 (513)
.+++.++++++.. + .++.|++++|||+|.+ |+.++..|... |+ .|++++++. .+
T Consensus 140 cTp~gi~~ll~~~-~-i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~a-tVtv~h~~t--------------------~~ 196 (281)
T 2c2x_A 140 CTPRGIVHLLRRY-D-ISIAGAHVVVIGRGVTVGRPLGLLLTRRSENA-TVTLCHTGT--------------------RD 196 (281)
T ss_dssp HHHHHHHHHHHHT-T-CCCTTCEEEEECCCTTTHHHHHHHHTSTTTCC-EEEEECTTC--------------------SC
T ss_pred ChHHHHHHHHHHc-C-CCCCCCEEEEECCCcHHHHHHHHHHhcCCCCC-EEEEEECch--------------------hH
Confidence 4566677777654 2 4789999999999986 99999999998 66 599998653 24
Q ss_pred HHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC-------CCCcccccc
Q 010322 303 MLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR-------NVGSCVADV 361 (513)
Q Consensus 303 ~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr-------didp~v~~l 361 (513)
+.+.+..||+||+||+.|+. ++.++++. | .++||+++|| |+++.+.+.
T Consensus 197 L~~~~~~ADIVI~Avg~p~~-I~~~~vk~---------G-avVIDVgi~r~~~glvGDVd~~v~~~ 251 (281)
T 2c2x_A 197 LPALTRQADIVVAAVGVAHL-LTADMVRP---------G-AAVIDVGVSRTDDGLVGDVHPDVWEL 251 (281)
T ss_dssp HHHHHTTCSEEEECSCCTTC-BCGGGSCT---------T-CEEEECCEEEETTEEEESBCGGGGGT
T ss_pred HHHHHhhCCEEEECCCCCcc-cCHHHcCC---------C-cEEEEccCCCCCCCccCccccchhhh
Confidence 55667899999999999986 78887632 2 7999999997 666555443
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.8e-09 Score=106.55 Aligned_cols=160 Identities=18% Similarity=0.208 Sum_probs=104.7
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCc--------cccccccc-cCC
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGK--------RVRTETNI-AAG 223 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~Vr~et~i-~~~ 223 (513)
..|||+++.+.+|+++++.+-+|+..+... +...++.|++++.++. .+..+... ...
T Consensus 61 i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~--------------~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~ 126 (315)
T 3goh_A 61 VPGVDGAGVIVKVGAKVDSKMLGRRVAYHT--------------SLKRHGSFAEFTVLNTDRVMTLPDNLSFERAAALPC 126 (315)
T ss_dssp CCCSEEEEEEEEECTTSCGGGTTCEEEEEC--------------CTTSCCSSBSEEEEETTSEEECCTTSCHHHHHTSHH
T ss_pred EeeeeeEEEEEEeCCCCCCCCCCCEEEEeC--------------CCCCCcccccEEEEcHHHhccCcCCCCHHHHhhCcc
Confidence 579999999999999999999999888632 2223455555554433 33333322 234
Q ss_pred CchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchH
Q 010322 224 AVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEM 303 (513)
Q Consensus 224 ~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~ 303 (513)
+.++++++++.+ ...+|++|+|+|+|++|.++++.++..|+ +|++++ ++++. ++++++|.. ..+. +.
T Consensus 127 ~~~ta~~al~~~------~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~-~~~~~lGa~-~v~~---d~ 193 (315)
T 3goh_A 127 PLLTAWQAFEKI------PLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQ-ALAAKRGVR-HLYR---EP 193 (315)
T ss_dssp HHHHHHHHHTTS------CCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCH-HHHHHHTEE-EEES---SG
T ss_pred HHHHHHHHHhhc------CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhH-HHHHHcCCC-EEEc---CH
Confidence 566677765322 23479999999999999999999999999 688888 77777 667888752 2222 22
Q ss_pred HhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 304 LSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 304 ~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
.+.-.++|+||+|++.+.. ...++.+. ++|+.+.+.
T Consensus 194 ~~v~~g~Dvv~d~~g~~~~---~~~~~~l~-----~~G~~v~~g 229 (315)
T 3goh_A 194 SQVTQKYFAIFDAVNSQNA---AALVPSLK-----ANGHIICIQ 229 (315)
T ss_dssp GGCCSCEEEEECC----------TTGGGEE-----EEEEEEEEC
T ss_pred HHhCCCccEEEECCCchhH---HHHHHHhc-----CCCEEEEEe
Confidence 2223589999999998643 23444332 356666664
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=4.2e-08 Score=101.08 Aligned_cols=118 Identities=17% Similarity=0.223 Sum_probs=83.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhCCc-ceeecccchHHhhcCCCcEEEEcCCCC-
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRSEERVAAICEELNGV-EIIYKPLSEMLSCAADADVVFTSTASE- 320 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~-~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~~~~~~~~~l~~aDVVI~AT~s~- 320 (513)
...++++|||+|.||+.++..|.. .+..+|+++||++++++++++.+... .+.+...++..+.+.++|+||+||+++
T Consensus 127 ~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~ 206 (350)
T 1x7d_A 127 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA 206 (350)
T ss_dssp TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC
Confidence 467899999999999999988764 57889999999999999999987421 122334567777888999999999997
Q ss_pred -ccCCChhhhhcCCchhhhcCCcEEEEeccC--C--CCCCcccccccCeEEEccCCHHH
Q 010322 321 -APLFLKDHVQDLPPVEAAVGGLRLFIDISV--P--RNVGSCVADVETARVYNVDDLKE 374 (513)
Q Consensus 321 -~~vi~~~~l~~~~~~~~~~~g~~viiDlav--P--rdidp~v~~l~gv~ly~iDdl~~ 374 (513)
.|++..++++. | ..+++++- | +++++.+... + . +-+|+..+
T Consensus 207 ~~pvl~~~~l~~---------G-~~V~~vgs~~p~~~El~~~~~~~-a-~-v~vD~~~~ 252 (350)
T 1x7d_A 207 YATIITPDMLEP---------G-MHLNAVGGDCPGKTELHADVLRN-A-R-VFVEYEPQ 252 (350)
T ss_dssp EEEEECGGGCCT---------T-CEEEECSCCBTTBEEECHHHHHT-S-E-EEESSHHH
T ss_pred CCceecHHHcCC---------C-CEEEECCCCCCCceeeCHHHHhc-C-c-EEECCHHH
Confidence 46766555432 2 56677752 2 4566654432 2 2 33566544
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.2e-09 Score=106.36 Aligned_cols=180 Identities=13% Similarity=0.145 Sum_probs=113.5
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhh------chHH----HHHHHhHhcCcccchhhHHHHHHHhhCcc--------c
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQIL------AQVK----QVVKVGQGVVGFGRNISGLFKHAISVGKR--------V 214 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIl------gQvk----~A~~~a~~~~~~g~~L~~lf~~ai~v~k~--------V 214 (513)
..|||+++.+.+|+++++.+.+|+..+. +.+. +.++.|.+....|...++.|++++.++.. +
T Consensus 60 v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~P~~~ 139 (343)
T 2eih_A 60 VLGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPKPKNL 139 (343)
T ss_dssp ECCSEEEEEEEEECSSCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTTSSCCSSBSEEEEEGGGEEECCTTS
T ss_pred ccccceEEEEEEECCCCCCCCCCCEEEECCCCCcccchhhccCcccccccccccCcCCCccceeEEEeChHHeEECCCCC
Confidence 5799999999999999999999999885 3221 23444544444443335777776665542 2
Q ss_pred cccccc-cCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC
Q 010322 215 RTETNI-AAGAVSVSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG 292 (513)
Q Consensus 215 r~et~i-~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~ 292 (513)
..+... ...+.+++++++... . .-..|++|+|+|+ |++|.++++.++..|+ +|+++++++++. ++++++|.
T Consensus 140 ~~~~aa~l~~~~~ta~~al~~~---~--~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~-~~~~~~ga 212 (343)
T 2eih_A 140 SFEEAAAIPLTFLTAWQMVVDK---L--GVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKL-RRAKALGA 212 (343)
T ss_dssp CHHHHHHSHHHHHHHHHHHTTT---S--CCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHH-HHHHHHTC
T ss_pred CHHHHhhchhhHHHHHHHHHHh---c--CCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHhcCC
Confidence 222221 123444555554321 1 2247899999999 9999999999999999 699999999888 45566774
Q ss_pred cceeeccc-ch----HHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 293 VEIIYKPL-SE----MLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 293 ~~~~~~~~-~~----~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
. ..+... ++ +.+.. .++|+||++++ +..+ ...++.+. ++|+.+.+..
T Consensus 213 ~-~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g-~~~~--~~~~~~l~-----~~G~~v~~g~ 266 (343)
T 2eih_A 213 D-ETVNYTHPDWPKEVRRLTGGKGADKVVDHTG-ALYF--EGVIKATA-----NGGRIAIAGA 266 (343)
T ss_dssp S-EEEETTSTTHHHHHHHHTTTTCEEEEEESSC-SSSH--HHHHHHEE-----EEEEEEESSC
T ss_pred C-EEEcCCcccHHHHHHHHhCCCCceEEEECCC-HHHH--HHHHHhhc-----cCCEEEEEec
Confidence 2 122211 12 22222 36999999999 4332 34444432 3455555543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=98.69 E-value=9e-09 Score=105.27 Aligned_cols=162 Identities=15% Similarity=0.181 Sum_probs=104.7
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhh--------Ccccccccc-ccCC
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISV--------GKRVRTETN-IAAG 223 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v--------~k~Vr~et~-i~~~ 223 (513)
..|||+++.+.+|+++++ +-+|+..+... .++.|++++.+ +..+..+.. ....
T Consensus 81 v~G~E~~G~V~~vG~~v~-~~vGDrV~~~~-----------------~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~ 142 (342)
T 4eye_A 81 VPGIETAGVVRSAPEGSG-IKPGDRVMAFN-----------------FIGGYAERVAVAPSNILPTPPQLDDAEAVALIA 142 (342)
T ss_dssp CCCSEEEEEEEECCTTSS-CCTTCEEEEEC-----------------SSCCSBSEEEECGGGEEECCTTSCHHHHHHHTT
T ss_pred ccceeEEEEEEEECCCCC-CCCCCEEEEec-----------------CCCcceEEEEEcHHHeEECCCCCCHHHHHHhhh
Confidence 579999999999999999 99999887531 12333333333 333333333 2345
Q ss_pred CchHHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccch
Q 010322 224 AVSVSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSE 302 (513)
Q Consensus 224 ~~Sva~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~ 302 (513)
+.+++++++.. .. ....|++|+|+|+ |++|.++++.++..|+ +|+++++++++. ++++++|... .+...++
T Consensus 143 ~~~ta~~~l~~---~~--~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~-~~~~~~ga~~-v~~~~~~ 214 (342)
T 4eye_A 143 NYHTMYFAYAR---RG--QLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAAT-EFVKSVGADI-VLPLEEG 214 (342)
T ss_dssp HHHHHHHHHHT---TS--CCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGH-HHHHHHTCSE-EEESSTT
T ss_pred HHHHHHHHHHH---hc--CCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHhcCCcE-EecCchh
Confidence 66667776521 11 2347999999998 9999999999999999 699999998887 6677787532 2211133
Q ss_pred HHh----hc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 303 MLS----CA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 303 ~~~----~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
..+ .. .++|+||+|++.+.. ...+..+. ++|..++++.
T Consensus 215 ~~~~v~~~~~~~g~Dvvid~~g~~~~---~~~~~~l~-----~~G~iv~~G~ 258 (342)
T 4eye_A 215 WAKAVREATGGAGVDMVVDPIGGPAF---DDAVRTLA-----SEGRLLVVGF 258 (342)
T ss_dssp HHHHHHHHTTTSCEEEEEESCC--CH---HHHHHTEE-----EEEEEEEC--
T ss_pred HHHHHHHHhCCCCceEEEECCchhHH---HHHHHhhc-----CCCEEEEEEc
Confidence 322 22 269999999998521 34444432 3566666654
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.5e-07 Score=97.94 Aligned_cols=122 Identities=20% Similarity=0.317 Sum_probs=85.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc----------------------
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL---------------------- 300 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~---------------------- 300 (513)
.+.+++|+|+|+|.+|+.+++.++..|++ |+++||++++.+.+ +.+|.. ......
T Consensus 169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~-V~~~d~~~~~~~~~-~~~Ga~-~~~i~~~~~~~~~~~~~~~~~~s~~~~~ 245 (384)
T 1l7d_A 169 TVPPARVLVFGVGVAGLQAIATAKRLGAV-VMATDVRAATKEQV-ESLGGK-FITVDDEAMKTAETAGGYAKEMGEEFRK 245 (384)
T ss_dssp EECCCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCSTTHHHH-HHTTCE-ECCC-----------------------C
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH-HHcCCe-EEeecccccccccccccchhhcCHHHHh
Confidence 46799999999999999999999999995 99999998887554 457642 110011
Q ss_pred ---chHHhhcCCCcEEEEcC---CCCcc-CCChhhhhcCCchhhhcCCcEEEEeccCCC--CCC----cccccccCeEEE
Q 010322 301 ---SEMLSCAADADVVFTST---ASEAP-LFLKDHVQDLPPVEAAVGGLRLFIDISVPR--NVG----SCVADVETARVY 367 (513)
Q Consensus 301 ---~~~~~~l~~aDVVI~AT---~s~~~-vi~~~~l~~~~~~~~~~~g~~viiDlavPr--did----p~v~~l~gv~ly 367 (513)
+.+.+.+.++|+||+|+ +.+.| +++.+.++.+. ++ .+++|+++++ +++ .......++.+|
T Consensus 246 ~~~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk-----~g--~vivdva~~~gg~~~~~~~~~~~~~~~v~i~ 318 (384)
T 1l7d_A 246 KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMK-----PG--SVIIDLAVEAGGNCPLSEPGKIVVKHGVKIV 318 (384)
T ss_dssp CHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSC-----TT--CEEEETTGGGTCSSTTCCTTCEEEETTEEEE
T ss_pred hhHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCC-----CC--CEEEEEecCCCCCeecccCCcEEEECCEEEE
Confidence 11556678999999999 44343 56777887653 12 5889999765 232 123345788888
Q ss_pred ccCCHHH
Q 010322 368 NVDDLKE 374 (513)
Q Consensus 368 ~iDdl~~ 374 (513)
.++.+..
T Consensus 319 g~~~~p~ 325 (384)
T 1l7d_A 319 GHTNVPS 325 (384)
T ss_dssp CCSSGGG
T ss_pred EeCCCcc
Confidence 8877644
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-07 Score=96.20 Aligned_cols=94 Identities=19% Similarity=0.339 Sum_probs=74.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
...+++|+|||+|.||+.++..|... |..+|+++||++++++++++.++. . +...+++.+.+.++|+||+||++..
T Consensus 132 ~~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~-~--~~~~~~~~e~v~~aDiVi~atp~~~ 208 (312)
T 2i99_A 132 PPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQG-E--VRVCSSVQEAVAGADVIITVTLATE 208 (312)
T ss_dssp CTTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSS-C--CEECSSHHHHHTTCSEEEECCCCSS
T ss_pred CCCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhC-C--eEEeCCHHHHHhcCCEEEEEeCCCC
Confidence 34678999999999999999999876 887899999999999999988762 1 1234566777889999999999988
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
+++..++++ .+ .+++|++
T Consensus 209 ~v~~~~~l~---------~g-~~vi~~g 226 (312)
T 2i99_A 209 PILFGEWVK---------PG-AHINAVG 226 (312)
T ss_dssp CCBCGGGSC---------TT-CEEEECC
T ss_pred cccCHHHcC---------CC-cEEEeCC
Confidence 887654332 12 5778875
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.5e-08 Score=102.96 Aligned_cols=165 Identities=15% Similarity=0.165 Sum_probs=105.5
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCc--------cccccccccCCC
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGK--------RVRTETNIAAGA 224 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~Vr~et~i~~~~ 224 (513)
..|||+++.+.+|+++++.+.+|+..+... +...++.|++++.++. .+..+..... |
T Consensus 84 v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~--------------~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l-~ 148 (363)
T 4dvj_A 84 VIGYDAAGIVSAVGPDVTLFRPGDEVFYAG--------------SIIRPGTNAEFHLVDERIVGRKPKTLDWAEAAAL-P 148 (363)
T ss_dssp CCCCCEEEEEEEECTTCCSCCTTCEEEECC--------------CTTSCCSCBSEEEEEGGGCEECCTTSCHHHHHTS-H
T ss_pred cccceeEEEEEEeCCCCCCCCCCCEEEEcc--------------CCCCCccceEEEEeCHHHeeECCCCCCHHHHHhh-h
Confidence 579999999999999999999999987521 1122344444444433 3333332222 2
Q ss_pred ch--HHHHHHHHHHhhCCCCCC-----CCCeEEEEc-ccHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcce
Q 010322 225 VS--VSSAAVELALMKLPESSH-----ATARMLVIG-AGKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEI 295 (513)
Q Consensus 225 ~S--va~~Av~la~~~~~~~~l-----~g~~VlVIG-aG~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~ 295 (513)
.+ +++.++. ... .-. +|++|+|+| +|++|.++++.++.. |+ +|+++++++++. ++++++|.. .
T Consensus 149 ~~~~ta~~al~---~~~--~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~~~~-~~~~~lGad-~ 220 (363)
T 4dvj_A 149 LTSITAWEAFF---DRL--DVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDL-TVIATASRPETQ-EWVKSLGAH-H 220 (363)
T ss_dssp HHHHHHHHHHH---TTS--CTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSHHHH-HHHHHTTCS-E
T ss_pred hHHHHHHHHHH---Hhh--CcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCHHHH-HHHHHcCCC-E
Confidence 22 3344431 111 112 688999999 799999999999875 65 699999999887 667788853 2
Q ss_pred eecccchHHhhc-----CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 296 IYKPLSEMLSCA-----ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 296 ~~~~~~~~~~~l-----~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
.+...++..+.+ .++|+||+|++++..+ ...++.+. ++|+.++++
T Consensus 221 vi~~~~~~~~~v~~~~~~g~Dvvid~~g~~~~~--~~~~~~l~-----~~G~iv~~g 270 (363)
T 4dvj_A 221 VIDHSKPLAAEVAALGLGAPAFVFSTTHTDKHA--AEIADLIA-----PQGRFCLID 270 (363)
T ss_dssp EECTTSCHHHHHHTTCSCCEEEEEECSCHHHHH--HHHHHHSC-----TTCEEEECS
T ss_pred EEeCCCCHHHHHHHhcCCCceEEEECCCchhhH--HHHHHHhc-----CCCEEEEEC
Confidence 232222332222 3799999999976443 34455443 467777764
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-08 Score=103.96 Aligned_cols=164 Identities=14% Similarity=0.148 Sum_probs=101.7
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCc--------cccccccccCCC
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGK--------RVRTETNIAAGA 224 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~Vr~et~i~~~~ 224 (513)
..|||+++.+.+|+++++.+-+|+...... ..++.|++++.++. .+..+....
T Consensus 60 v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~----------------~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~--- 120 (325)
T 3jyn_A 60 GLGAEGAGVVEAVGDEVTRFKVGDRVAYGT----------------GPLGAYSEVHVLPEANLVKLADSVSFEQAAA--- 120 (325)
T ss_dssp CCCCCEEEEEEEECTTCCSCCTTCEEEESS----------------SSSCCSBSEEEEEGGGEEECCTTSCHHHHHH---
T ss_pred CCCceeEEEEEEECCCCCCCCCCCEEEEec----------------CCCccccceEEecHHHeEECCCCCCHHHHhh---
Confidence 479999999999999999999999887532 11334444444433 222221110
Q ss_pred chHHHH-HHHHHHhhCCCCCCCCCeEEEEc-ccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-c
Q 010322 225 VSVSSA-AVELALMKLPESSHATARMLVIG-AGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL-S 301 (513)
Q Consensus 225 ~Sva~~-Av~la~~~~~~~~l~g~~VlVIG-aG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~-~ 301 (513)
+.+... |........ ...+|++|+|+| +|++|.++++.++..|+ +|+++++++++. ++++++|.. ..+... +
T Consensus 121 l~~~~~ta~~~l~~~~--~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~-~~~~~~Ga~-~~~~~~~~ 195 (325)
T 3jyn_A 121 LMLKGLTVQYLLRQTY--QVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKA-AHAKALGAW-ETIDYSHE 195 (325)
T ss_dssp HHHHHHHHHHHHHTTS--CCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHH-HHHHHHTCS-EEEETTTS
T ss_pred hhhhHHHHHHHHHHhc--CCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHcCCC-EEEeCCCc
Confidence 011111 111111211 234799999999 69999999999999999 699999999888 566778753 222221 1
Q ss_pred hHH----hhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 302 EML----SCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 302 ~~~----~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+.. +.. .++|+||+|++.. .+ ...+..+. ++|+.++++.
T Consensus 196 ~~~~~~~~~~~~~g~Dvvid~~g~~-~~--~~~~~~l~-----~~G~iv~~g~ 240 (325)
T 3jyn_A 196 DVAKRVLELTDGKKCPVVYDGVGQD-TW--LTSLDSVA-----PRGLVVSFGN 240 (325)
T ss_dssp CHHHHHHHHTTTCCEEEEEESSCGG-GH--HHHHTTEE-----EEEEEEECCC
T ss_pred cHHHHHHHHhCCCCceEEEECCChH-HH--HHHHHHhc-----CCCEEEEEec
Confidence 222 222 3799999999973 22 33444432 3566666654
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.5e-08 Score=102.92 Aligned_cols=172 Identities=15% Similarity=0.141 Sum_probs=103.5
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccc---cccCCCchHHH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTET---NIAAGAVSVSS 229 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et---~i~~~~~Sva~ 229 (513)
..|||+++.+.+|+++++.+.+|+..+.... ..|.+..+.----...+.+|+.+..+. .....+..+++
T Consensus 63 i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~--------~~G~~aey~~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~ 134 (333)
T 1wly_A 63 VVGFEAAAVVEEVGPGVTDFTVGERVCTCLP--------PLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQ 134 (333)
T ss_dssp ECCCEEEEEEEEECTTCCSCCTTCEEEECSS--------SCCCSBSEEEEEGGGCEECCTTCCCCHHHHHHHHHHHHHHH
T ss_pred cccceeEEEEEEECCCCCCCCCCCEEEEecC--------CCCcceeEEEecHHHcEeCCCCCChHHhCccchhhhHHHHH
Confidence 4799999999999999999999998854211 112222221000011223344343333 11122444555
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-ch----H
Q 010322 230 AAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL-SE----M 303 (513)
Q Consensus 230 ~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~-~~----~ 303 (513)
+++.. .. ....|++|+|+|+ |++|.++++.++..|+ +|++++|++++.+ +++++|.. ..+... ++ +
T Consensus 135 ~~l~~---~~--~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~-~~~~~g~~-~~~d~~~~~~~~~i 206 (333)
T 1wly_A 135 YLLHQ---TH--KVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAE-TARKLGCH-HTINYSTQDFAEVV 206 (333)
T ss_dssp HHHHT---TS--CCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHH-HHHHHTCS-EEEETTTSCHHHHH
T ss_pred HHHHH---hh--CCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHH-HHHHcCCC-EEEECCCHHHHHHH
Confidence 55431 11 2347899999996 9999999999999998 6999999988874 45567642 222211 12 2
Q ss_pred Hhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 304 LSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 304 ~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.+.. .++|+||+|++.. .+ ...++.+. ++|..+.++.
T Consensus 207 ~~~~~~~~~d~vi~~~g~~-~~--~~~~~~l~-----~~G~iv~~g~ 245 (333)
T 1wly_A 207 REITGGKGVDVVYDSIGKD-TL--QKSLDCLR-----PRGMCAAYGH 245 (333)
T ss_dssp HHHHTTCCEEEEEECSCTT-TH--HHHHHTEE-----EEEEEEECCC
T ss_pred HHHhCCCCCeEEEECCcHH-HH--HHHHHhhc-----cCCEEEEEec
Confidence 2222 3699999999972 22 34444432 3565666654
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.9e-08 Score=98.72 Aligned_cols=163 Identities=13% Similarity=0.157 Sum_probs=105.6
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCc--------cccccccccC-C
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGK--------RVRTETNIAA-G 223 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~Vr~et~i~~-~ 223 (513)
..|||+++.+.+|++++..+-+|+..+... +. ...++.|++++.++. .+..+..... .
T Consensus 70 v~G~E~~G~V~~vG~~v~~~~~GdrV~~~~-----------~~--~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~ 136 (321)
T 3tqh_A 70 GLGYDFSGEVIELGSDVNNVNIGDKVMGIA-----------GF--PDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPT 136 (321)
T ss_dssp CCCCEEEEEEEEECTTCCSCCTTCEEEEEC-----------ST--TTCCCCSBSEEEECGGGEEECCTTSCHHHHHHSHH
T ss_pred cccceeEEEEEEeCCCCCCCCCCCEEEEcc-----------CC--CCCCCcceEEEEecHHHhccCCCCCCHHHHhhhhh
Confidence 479999999999999999999999887532 00 012334444443333 2332222222 1
Q ss_pred CchHHHHHHHHHHhhCCCCCCCCCeEEEEc-ccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-c
Q 010322 224 AVSVSSAAVELALMKLPESSHATARMLVIG-AGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL-S 301 (513)
Q Consensus 224 ~~Sva~~Av~la~~~~~~~~l~g~~VlVIG-aG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~-~ 301 (513)
+..+++++++.+ ...+|++|+|+| +|++|.++++.++..|+ +|+++.+ .++ .++++++|... .+... .
T Consensus 137 ~~~ta~~al~~~------~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~~-~~~-~~~~~~lGa~~-~i~~~~~ 206 (321)
T 3tqh_A 137 AGLTALQALNQA------EVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTAS-KRN-HAFLKALGAEQ-CINYHEE 206 (321)
T ss_dssp HHHHHHHHHHHT------TCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEEC-HHH-HHHHHHHTCSE-EEETTTS
T ss_pred HHHHHHHHHHhc------CCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEec-cch-HHHHHHcCCCE-EEeCCCc
Confidence 223567776443 235799999997 89999999999999999 4777764 455 47888888632 22221 2
Q ss_pred h-HHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEE
Q 010322 302 E-MLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFI 346 (513)
Q Consensus 302 ~-~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~vii 346 (513)
+ +.+.+.++|+||+|++.+.. ...++.+. ++|+.+.+
T Consensus 207 ~~~~~~~~g~D~v~d~~g~~~~---~~~~~~l~-----~~G~iv~~ 244 (321)
T 3tqh_A 207 DFLLAISTPVDAVIDLVGGDVG---IQSIDCLK-----ETGCIVSV 244 (321)
T ss_dssp CHHHHCCSCEEEEEESSCHHHH---HHHGGGEE-----EEEEEEEC
T ss_pred chhhhhccCCCEEEECCCcHHH---HHHHHhcc-----CCCEEEEe
Confidence 3 66667899999999997543 34454432 35555554
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-07 Score=98.44 Aligned_cols=122 Identities=18% Similarity=0.263 Sum_probs=86.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecc--------------c--------c
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKP--------------L--------S 301 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~--------------~--------~ 301 (513)
+.+++|+|+|+|.+|..+++.++..|+ +|+++|+++++.+.+ +.+|...+.+.. . +
T Consensus 170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~-~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 247 (401)
T 1x13_A 170 VPPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQV-QSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEME 247 (401)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGGGHHHH-HHTTCEECCC--------CCHHHHHHSHHHHHHHHH
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH-HHcCCEEEEecccccccccccchhhccHHHHHHHHH
Confidence 578999999999999999999999998 699999999988554 566642110000 0 0
Q ss_pred hHHhhcCCCcEEEEcCCCC---c-cCCChhhhhcCCchhhhcCCcEEEEeccCCC--CCCcc-----cccccCeEEEccC
Q 010322 302 EMLSCAADADVVFTSTASE---A-PLFLKDHVQDLPPVEAAVGGLRLFIDISVPR--NVGSC-----VADVETARVYNVD 370 (513)
Q Consensus 302 ~~~~~l~~aDVVI~AT~s~---~-~vi~~~~l~~~~~~~~~~~g~~viiDlavPr--didp~-----v~~l~gv~ly~iD 370 (513)
.+.+.+.++|+||+|++.| . .+++.+.++.+.+ + .++||+++|+ +++.. +....|+.+|.++
T Consensus 248 ~l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~-----g--~vIVdva~~~Gg~v~~~~~~~p~~~~~gv~i~g~~ 320 (401)
T 1x13_A 248 LFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKA-----G--SVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYT 320 (401)
T ss_dssp HHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCT-----T--CEEEETTGGGTCSBTTCCTTSEEECTTSCEEECCS
T ss_pred HHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCC-----C--cEEEEEcCCCCCCcCcccCCCceEEECCEEEEeeC
Confidence 2455667899999996443 3 4567788877531 2 5899999874 34322 2345789999888
Q ss_pred CHHH
Q 010322 371 DLKE 374 (513)
Q Consensus 371 dl~~ 374 (513)
++..
T Consensus 321 ~~p~ 324 (401)
T 1x13_A 321 DLPG 324 (401)
T ss_dssp CTGG
T ss_pred CCcc
Confidence 7654
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.2e-08 Score=101.31 Aligned_cols=164 Identities=12% Similarity=0.181 Sum_probs=106.9
Q ss_pred HhcCCceeeeeeeeccCC-CCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhh--------Cccccccccc--
Q 010322 152 LLYNKDATQHLFEVSAGL-DSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISV--------GKRVRTETNI-- 220 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGl-dS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v--------~k~Vr~et~i-- 220 (513)
...|||+++.+.+|++++ +.+.+|+..+.. .|...++.|++++.+ |..+..+...
T Consensus 81 ~v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~--------------~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l 146 (349)
T 3pi7_A 81 RPAGFEGVGTIVAGGDEPYAKSLVGKRVAFA--------------TGLSNWGSWAEYAVAEAAACIPLLDTVRDEDGAAM 146 (349)
T ss_dssp SBCCSEEEEEEEEECSSHHHHHHTTCEEEEE--------------CTTSSCCSSBSEEEEEGGGEEECCTTCCC--GGGS
T ss_pred CCccceEEEEEEEECCCccCCCCCCCEEEEe--------------ccCCCCccceeeEeechHHeEECCCCCCHHHHhhc
Confidence 357999999999999999 899999988864 122234455554443 3334333332
Q ss_pred cCCCchHHHHHHHHHHhhCCCCCCCC-CeEEEE-cccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec
Q 010322 221 AAGAVSVSSAAVELALMKLPESSHAT-ARMLVI-GAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK 298 (513)
Q Consensus 221 ~~~~~Sva~~Av~la~~~~~~~~l~g-~~VlVI-GaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~ 298 (513)
..++.+ ++++++.+. . .| ++|+|. |+|++|.++++.++..|+ +|+++++++++. ++++++|.. ..+.
T Consensus 147 ~~~~~t-a~~~~~~~~-~------~g~~~vli~gg~g~vG~~a~qla~~~Ga-~Vi~~~~~~~~~-~~~~~~Ga~-~~~~ 215 (349)
T 3pi7_A 147 IVNPLT-AIAMFDIVK-Q------EGEKAFVMTAGASQLCKLIIGLAKEEGF-RPIVTVRRDEQI-ALLKDIGAA-HVLN 215 (349)
T ss_dssp SHHHHH-HHHHHHHHH-H------HCCSEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESCGGGH-HHHHHHTCS-EEEE
T ss_pred cccHHH-HHHHHHHHh-h------CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHcCCC-EEEE
Confidence 223332 566666554 2 34 667766 779999999999999999 699999999887 566788753 2222
Q ss_pred cc-chHHhhc------CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 299 PL-SEMLSCA------ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 299 ~~-~~~~~~l------~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.. ++..+.+ .++|+||+|++.+.. ...+..+. ++|..++++.
T Consensus 216 ~~~~~~~~~v~~~~~~~g~D~vid~~g~~~~---~~~~~~l~-----~~G~iv~~G~ 264 (349)
T 3pi7_A 216 EKAPDFEATLREVMKAEQPRIFLDAVTGPLA---SAIFNAMP-----KRARWIIYGR 264 (349)
T ss_dssp TTSTTHHHHHHHHHHHHCCCEEEESSCHHHH---HHHHHHSC-----TTCEEEECCC
T ss_pred CCcHHHHHHHHHHhcCCCCcEEEECCCChhH---HHHHhhhc-----CCCEEEEEec
Confidence 21 2222222 379999999997642 34555443 4677777764
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.9e-08 Score=102.52 Aligned_cols=162 Identities=13% Similarity=0.155 Sum_probs=101.9
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhC--------ccccccccc--cC
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVG--------KRVRTETNI--AA 222 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~--------k~Vr~et~i--~~ 222 (513)
..|||+++.+.+|+++++.+.+|+..+.- ..++.|++++.++ +.+..+... ..
T Consensus 65 i~G~E~~G~V~~vG~~v~~~~vGdrV~~~-----------------~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~l~~ 127 (340)
T 3gms_A 65 IPGYEGVGIVENVGAFVSRELIGKRVLPL-----------------RGEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYI 127 (340)
T ss_dssp CCCSCCEEEEEEECTTSCGGGTTCEEEEC-----------------SSSCSSBSEEEEEGGGEEECCTTSCHHHHTTSSH
T ss_pred cCCcceEEEEEEeCCCCCCCCCCCEEEec-----------------CCCccceeEEEcCHHHeEECCCCCCHHHHhhhcc
Confidence 47999999999999999999999988731 1133444444333 333333222 11
Q ss_pred CCchHHHHHHHHHHhhCCCCCCCCCeEEEEccc-HHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-
Q 010322 223 GAVSVSSAAVELALMKLPESSHATARMLVIGAG-KMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL- 300 (513)
Q Consensus 223 ~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG-~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~- 300 (513)
++.+. +.+ +.... ...+|++|+|+|+| ++|.++++.++..|+ +|+++++++++. ++++++|.. ..+...
T Consensus 128 ~~~ta-~~~---~~~~~--~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~-~~~~~lga~-~~~~~~~ 198 (340)
T 3gms_A 128 NPLTA-WVT---CTETL--NLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHT-EELLRLGAA-YVIDTST 198 (340)
T ss_dssp HHHHH-HHH---HHTTS--CCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTH-HHHHHHTCS-EEEETTT
T ss_pred hHHHH-HHH---HHHhc--ccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHhCCCc-EEEeCCc
Confidence 22222 222 11211 23479999999996 999999999999999 699999998887 566778753 222221
Q ss_pred chHH----hhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 301 SEML----SCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 301 ~~~~----~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
++.. +.. .++|+||+|++.+.. .+.+..+. ++|..+.++.
T Consensus 199 ~~~~~~~~~~~~~~g~Dvvid~~g~~~~---~~~~~~l~-----~~G~iv~~G~ 244 (340)
T 3gms_A 199 APLYETVMELTNGIGADAAIDSIGGPDG---NELAFSLR-----PNGHFLTIGL 244 (340)
T ss_dssp SCHHHHHHHHTTTSCEEEEEESSCHHHH---HHHHHTEE-----EEEEEEECCC
T ss_pred ccHHHHHHHHhCCCCCcEEEECCCChhH---HHHHHHhc-----CCCEEEEEee
Confidence 1222 222 379999999998643 22333221 4566666664
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.4e-08 Score=101.03 Aligned_cols=147 Identities=14% Similarity=0.191 Sum_probs=96.1
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCc--------cccccccccCCC
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGK--------RVRTETNIAAGA 224 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~Vr~et~i~~~~ 224 (513)
..|||+++.+.+|+++++.+.+|+..+... +...++.|++++.++. .+..+..... |
T Consensus 62 i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~--------------~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~ 126 (346)
T 3fbg_A 62 VLGFDAIGVVESVGNEVTMFNQGDIVYYSG--------------SPDQNGSNAEYQLINERLVAKAPKNISAEQAVSL-P 126 (346)
T ss_dssp CCCCCEEEEEEEECTTCCSCCTTCEEEECC--------------CTTSCCSSBSEEEEEGGGEEECCSSSCHHHHTTS-H
T ss_pred CcCCccEEEEEEeCCCCCcCCCCCEEEEcC--------------CCCCCcceeEEEEEChHHeEECCCCCCHHHhhhc-c
Confidence 579999999999999999999999887421 1122344555444433 2322222221 2
Q ss_pred ch--HHHHHHHHHHhhCCCCCC------CCCeEEEE-cccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcce
Q 010322 225 VS--VSSAAVELALMKLPESSH------ATARMLVI-GAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEI 295 (513)
Q Consensus 225 ~S--va~~Av~la~~~~~~~~l------~g~~VlVI-GaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~ 295 (513)
.+ +++.++. ... .-. +|++|+|+ |+|++|.++++.++..|+ +|+++++++++. ++++++|.. .
T Consensus 127 ~~~~ta~~~l~---~~~--~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~-~~~~~lGa~-~ 198 (346)
T 3fbg_A 127 LTGITAYETLF---DVF--GISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETI-EWTKKMGAD-I 198 (346)
T ss_dssp HHHHHHHHHHH---TTS--CCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHH-HHHHHHTCS-E
T ss_pred hhHHHHHHHHH---Hhc--CCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHhcCCc-E
Confidence 22 2333321 111 122 68999999 689999999999999999 699999999887 667778753 2
Q ss_pred eecccchHHhhc-----CCCcEEEEcCCCCcc
Q 010322 296 IYKPLSEMLSCA-----ADADVVFTSTASEAP 322 (513)
Q Consensus 296 ~~~~~~~~~~~l-----~~aDVVI~AT~s~~~ 322 (513)
.+...+++.+.+ .++|+||+|++.+..
T Consensus 199 vi~~~~~~~~~~~~~~~~g~Dvv~d~~g~~~~ 230 (346)
T 3fbg_A 199 VLNHKESLLNQFKTQGIELVDYVFCTFNTDMY 230 (346)
T ss_dssp EECTTSCHHHHHHHHTCCCEEEEEESSCHHHH
T ss_pred EEECCccHHHHHHHhCCCCccEEEECCCchHH
Confidence 222222322221 369999999997644
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=2.8e-08 Score=100.60 Aligned_cols=164 Identities=12% Similarity=0.134 Sum_probs=101.8
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhh--------Ccccccccc-ccCC
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISV--------GKRVRTETN-IAAG 223 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v--------~k~Vr~et~-i~~~ 223 (513)
..|||+++.+.+|+++++.+-+|+..... +. .++.|++++.+ |+.+..+.. ....
T Consensus 60 v~G~E~~G~V~~vG~~v~~~~~GdrV~~~------------g~----~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~ 123 (327)
T 1qor_A 60 GLGTEAAGIVSKVGSGVKHIKAGDRVVYA------------QS----ALGAYSSVHNIIADKAAILPAAISFEQAAASFL 123 (327)
T ss_dssp CCCSCEEEEEEEECTTCCSCCTTCEEEES------------CC----SSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHH
T ss_pred CCCceeEEEEEEECCCCCCCCCCCEEEEC------------CC----CCceeeeEEEecHHHcEECCCCCCHHHHHHhhh
Confidence 47999999999999999999999988321 00 02333333333 333332222 1123
Q ss_pred CchHHHHHHHHHHhhCCCCCCCCCeEEEEc-ccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-c
Q 010322 224 AVSVSSAAVELALMKLPESSHATARMLVIG-AGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL-S 301 (513)
Q Consensus 224 ~~Sva~~Av~la~~~~~~~~l~g~~VlVIG-aG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~-~ 301 (513)
+.+++++++.. .. ....|++|+|+| +|++|.++++.++..|+ +|+++++++++. +++.++|.. ..+... +
T Consensus 124 ~~~ta~~al~~---~~--~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~-~~~~~~g~~-~~~~~~~~ 195 (327)
T 1qor_A 124 KGLTVYYLLRK---TY--EIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKA-QSALKAGAW-QVINYREE 195 (327)
T ss_dssp HHHHHHHHHHT---TS--CCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHH-HHHHHHTCS-EEEETTTS
T ss_pred HHHHHHHHHHH---hh--CCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHcCCC-EEEECCCc
Confidence 44556665531 11 234789999999 59999999999999999 699999998887 445567642 222211 1
Q ss_pred h----HHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 302 E----MLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 302 ~----~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+ +.+.. .++|+||+|++ +..+ ...++.+. ++|+.+.+..
T Consensus 196 ~~~~~~~~~~~~~~~D~vi~~~g-~~~~--~~~~~~l~-----~~G~iv~~g~ 240 (327)
T 1qor_A 196 DLVERLKEITGGKKVRVVYDSVG-RDTW--ERSLDCLQ-----RRGLMVSFGN 240 (327)
T ss_dssp CHHHHHHHHTTTCCEEEEEECSC-GGGH--HHHHHTEE-----EEEEEEECCC
T ss_pred cHHHHHHHHhCCCCceEEEECCc-hHHH--HHHHHHhc-----CCCEEEEEec
Confidence 2 22222 26899999998 3332 34444432 3565555553
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.6e-08 Score=107.04 Aligned_cols=183 Identities=15% Similarity=0.127 Sum_probs=110.9
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchH---------HHHHHHhHhcCcccchh-hHHHHHHHhhCcc--------
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQV---------KQVVKVGQGVVGFGRNI-SGLFKHAISVGKR-------- 213 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQv---------k~A~~~a~~~~~~g~~L-~~lf~~ai~v~k~-------- 213 (513)
...|||+++.+.+|+++++.+.+|+.++.... +..+..|......|... ++.|++++.++..
T Consensus 111 ~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~iP~~ 190 (447)
T 4a0s_A 111 HVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGLAEYGVVRASQLLPKPAH 190 (447)
T ss_dssp EECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSGGGGTCTTCSTTCEETTTTSSSCSSBSEEEEEGGGEEECCTT
T ss_pred cccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCcccccccccccccccccccccCCCCceeeeeecCHHHcEECCCC
Confidence 35799999999999999999999999886321 11122233333333322 3677776655442
Q ss_pred ccccccccC-CCchHHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC
Q 010322 214 VRTETNIAA-GAVSVSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN 291 (513)
Q Consensus 214 Vr~et~i~~-~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g 291 (513)
+..+..... .+..++++++... ... ....|++|+|+|+ |++|.++++.++..|++ |+++.+++++. ++++++|
T Consensus 191 ls~~~aA~l~~~~~tA~~al~~~-~~~--~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~-vi~~~~~~~~~-~~~~~lG 265 (447)
T 4a0s_A 191 LTWEEAAVSPLCAGTAYRMLVSD-RGA--QMKQGDIVLIWGASGGLGSYAIQFVKNGGGI-PVAVVSSAQKE-AAVRALG 265 (447)
T ss_dssp SCHHHHHTSHHHHHHHHHHHTST-TTT--CCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSHHHH-HHHHHTT
T ss_pred CCHHHHHHhHHHHHHHHHHHHhh-hcc--CCCCCCEEEEECCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHH-HHHHhcC
Confidence 222222211 1222334433100 001 2357999999998 99999999999999995 77888998888 5667887
Q ss_pred Ccceeeccc-----------------------chHHhh-cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 292 GVEIIYKPL-----------------------SEMLSC-AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 292 ~~~~~~~~~-----------------------~~~~~~-l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
... .+... +.+.+. -.++|+||+|++.+ .+ ...+..+. ++|..+.+.
T Consensus 266 a~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~~-~~--~~~~~~l~-----~~G~iv~~G 336 (447)
T 4a0s_A 266 CDL-VINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRV-TF--GLSVIVAR-----RGGTVVTCG 336 (447)
T ss_dssp CCC-EEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSCHH-HH--HHHHHHSC-----TTCEEEESC
T ss_pred CCE-EEecccccccccccccccccchhhhHHHHHHHHHhCCCceEEEECCCch-HH--HHHHHHHh-----cCCEEEEEe
Confidence 531 22111 111111 24799999999974 22 34444443 367666665
Q ss_pred c
Q 010322 348 I 348 (513)
Q Consensus 348 l 348 (513)
.
T Consensus 337 ~ 337 (447)
T 4a0s_A 337 S 337 (447)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=9.8e-08 Score=98.68 Aligned_cols=148 Identities=14% Similarity=0.184 Sum_probs=93.0
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhh--------CccccccccccCC-
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISV--------GKRVRTETNIAAG- 223 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v--------~k~Vr~et~i~~~- 223 (513)
..|||+++.+.+|+++++.+.+|+..+... +...++.|++++.+ |+.+..+......
T Consensus 97 v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~--------------~~~~~G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~ 162 (375)
T 2vn8_A 97 TLGRDVSGVVMECGLDVKYFKPGDEVWAAV--------------PPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPY 162 (375)
T ss_dssp CCCCEEEEEEEEECTTCCSCCTTCEEEEEC--------------CTTSCCSSBSEEEEEGGGEEECCTTSCHHHHTTSHH
T ss_pred ccceeeeEEEEEeCCCCCCCCCCCEEEEec--------------CCCCCccceeEEEEcHHHeeeCCCCCCHHHHhhhHH
Confidence 479999999999999999999999887532 00112444444433 3333333322221
Q ss_pred CchHHHHHHH-HHHhhCCCCCCCCCeEEEEc-ccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-
Q 010322 224 AVSVSSAAVE-LALMKLPESSHATARMLVIG-AGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL- 300 (513)
Q Consensus 224 ~~Sva~~Av~-la~~~~~~~~l~g~~VlVIG-aG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~- 300 (513)
+..++++++. .+. ++.....|++|+|+| +|++|.++++.++..|+ +|+++. +.++. ++++++|.. ..+...
T Consensus 163 ~~~tA~~al~~~~~--~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~-~~~~~-~~~~~lGa~-~v~~~~~ 236 (375)
T 2vn8_A 163 VALTAWSAINKVGG--LNDKNCTGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVC-SQDAS-ELVRKLGAD-DVIDYKS 236 (375)
T ss_dssp HHHHHHHHHTTTTC--CCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGH-HHHHHTTCS-EEEETTS
T ss_pred HHHHHHHHHHHhcc--cccccCCCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEe-ChHHH-HHHHHcCCC-EEEECCc
Confidence 1234454442 110 000034789999999 69999999999999998 587777 45666 567788753 222211
Q ss_pred chHHhh---cCCCcEEEEcCCCC
Q 010322 301 SEMLSC---AADADVVFTSTASE 320 (513)
Q Consensus 301 ~~~~~~---l~~aDVVI~AT~s~ 320 (513)
++..+. ..++|+||+|++.+
T Consensus 237 ~~~~~~~~~~~g~D~vid~~g~~ 259 (375)
T 2vn8_A 237 GSVEEQLKSLKPFDFILDNVGGS 259 (375)
T ss_dssp SCHHHHHHTSCCBSEEEESSCTT
T ss_pred hHHHHHHhhcCCCCEEEECCCCh
Confidence 122221 25799999999987
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.5e-08 Score=100.49 Aligned_cols=163 Identities=12% Similarity=0.147 Sum_probs=103.6
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhC--------ccccccccc-cCC
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVG--------KRVRTETNI-AAG 223 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~--------k~Vr~et~i-~~~ 223 (513)
..|||+++.+.+|+++++.+.+|+..+.- ..++.|++++.++ +.+..+... ...
T Consensus 88 i~G~E~~G~V~~vG~~v~~~~vGdrV~~~-----------------~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~ 150 (353)
T 4dup_A 88 ILGLELSGEIVGVGPGVSGYAVGDKVCGL-----------------ANGGAYAEYCLLPAGQILPFPKGYDAVKAAALPE 150 (353)
T ss_dssp SSCCEEEEEEEEECTTCCSCCTTCEEEEE-----------------CSSCCSBSEEEEEGGGEEECCTTCCHHHHHTSHH
T ss_pred ccccccEEEEEEECCCCCCCCCCCEEEEe-----------------cCCCceeeEEEEcHHHcEeCCCCCCHHHHhhhhh
Confidence 57999999999999999999999988632 1123444433333 333322221 123
Q ss_pred CchHHHHHHHHHHhhCCCCCCCCCeEEEE-cccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecc-cc
Q 010322 224 AVSVSSAAVELALMKLPESSHATARMLVI-GAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKP-LS 301 (513)
Q Consensus 224 ~~Sva~~Av~la~~~~~~~~l~g~~VlVI-GaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~-~~ 301 (513)
+.++++.++. ... ....|++|+|+ |+|++|.++++.++..|+ +|+++++++++. ++++++|.. ..+.. .+
T Consensus 151 ~~~ta~~~l~---~~~--~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~-~~~~~lGa~-~~~~~~~~ 222 (353)
T 4dup_A 151 TFFTVWANLF---QMA--GLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKC-EACERLGAK-RGINYRSE 222 (353)
T ss_dssp HHHHHHHHHT---TTT--CCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHH-HHHHHHTCS-EEEETTTS
T ss_pred HHHHHHHHHH---Hhc--CCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHhcCCC-EEEeCCch
Confidence 4445555541 111 23478999999 569999999999999999 599999999988 566778753 12221 11
Q ss_pred hHHhh-----cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 302 EMLSC-----AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 302 ~~~~~-----l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+..+. -.++|+||+|++.+.. ...+..+. ++|..+.+..
T Consensus 223 ~~~~~~~~~~~~g~Dvvid~~g~~~~---~~~~~~l~-----~~G~iv~~g~ 266 (353)
T 4dup_A 223 DFAAVIKAETGQGVDIILDMIGAAYF---ERNIASLA-----KDGCLSIIAF 266 (353)
T ss_dssp CHHHHHHHHHSSCEEEEEESCCGGGH---HHHHHTEE-----EEEEEEECCC
T ss_pred HHHHHHHHHhCCCceEEEECCCHHHH---HHHHHHhc-----cCCEEEEEEe
Confidence 22222 2479999999997521 33444432 3565555553
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=3.9e-08 Score=100.94 Aligned_cols=163 Identities=13% Similarity=0.193 Sum_probs=102.7
Q ss_pred hcCCceeeeeeeeccCC-CCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHh--------hCccccccccc-cC
Q 010322 153 LYNKDATQHLFEVSAGL-DSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAIS--------VGKRVRTETNI-AA 222 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGl-dS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~--------v~k~Vr~et~i-~~ 222 (513)
..|||+++.+.+|++++ +.+-+|+..+... .++.|++++. +|+.+..+... ..
T Consensus 82 v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~-----------------~~G~~aey~~v~~~~~~~iP~~ls~~~aa~l~ 144 (354)
T 2j8z_A 82 ILGLEASGHVAELGPGCQGHWKIGDTAMALL-----------------PGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIP 144 (354)
T ss_dssp SSCSEEEEEEEEECSCC--CCCTTCEEEEEC-----------------SSCCSBSEEEEEGGGEEECCTTCCHHHHTTSH
T ss_pred ccceeeEEEEEEECCCcCCCCCCCCEEEEec-----------------CCCcceeEEEeCHHHcEECCCCCCHHHHHhcc
Confidence 57999999999999999 9999999887421 1133333333 33333333321 11
Q ss_pred CCchHHHHHHHHHHhhCCCCCCCCCeEEEEc-ccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-
Q 010322 223 GAVSVSSAAVELALMKLPESSHATARMLVIG-AGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL- 300 (513)
Q Consensus 223 ~~~Sva~~Av~la~~~~~~~~l~g~~VlVIG-aG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~- 300 (513)
.+.+++++++. ... .-..|++|+|+| +|++|.++++.++..|+ +|++++|++++.+ +++++|.. ..+...
T Consensus 145 ~~~~tA~~al~---~~~--~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~-~~~~~g~~-~~~~~~~ 216 (354)
T 2j8z_A 145 EAWLTAFQLLH---LVG--NVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQ-MAEKLGAA-AGFNYKK 216 (354)
T ss_dssp HHHHHHHHHHT---TTS--CCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHH-HHHHHTCS-EEEETTT
T ss_pred chHHHHHHHHH---Hhc--CCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHH-HHHHcCCc-EEEecCC
Confidence 24455555542 111 234789999999 59999999999999999 5999999998884 45777742 222211
Q ss_pred ch----HHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 301 SE----MLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 301 ~~----~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.+ +.+.. .++|+||+|++.+ .+ ...++.+. ++|..++++.
T Consensus 217 ~~~~~~~~~~~~~~~~d~vi~~~G~~-~~--~~~~~~l~-----~~G~iv~~G~ 262 (354)
T 2j8z_A 217 EDFSEATLKFTKGAGVNLILDCIGGS-YW--EKNVNCLA-----LDGRWVLYGL 262 (354)
T ss_dssp SCHHHHHHHHTTTSCEEEEEESSCGG-GH--HHHHHHEE-----EEEEEEECCC
T ss_pred hHHHHHHHHHhcCCCceEEEECCCch-HH--HHHHHhcc-----CCCEEEEEec
Confidence 12 22222 3699999999975 22 33444432 3565666654
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=7e-08 Score=98.07 Aligned_cols=162 Identities=15% Similarity=0.237 Sum_probs=100.7
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhC---------ccccccc---cc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVG---------KRVRTET---NI 220 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~---------k~Vr~et---~i 220 (513)
..|||+++.+.+|+++++.+-+|+..+... ++.|++++.++ +.+..+. ..
T Consensus 66 i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~------------------~G~~aey~~v~~~~~~~~~P~~~~~~~~~~aa 127 (334)
T 3qwb_A 66 VLGREASGTVVAKGKGVTNFEVGDQVAYIS------------------NSTFAQYSKISSQGPVMKLPKGTSDEELKLYA 127 (334)
T ss_dssp ECCSEEEEEEEEECTTCCSCCTTCEEEEEC------------------SSCSBSEEEEETTSSEEECCTTCCHHHHHHHH
T ss_pred ccccceEEEEEEECCCCCCCCCCCEEEEee------------------CCcceEEEEecCcceEEECCCCCCHHHhhhhh
Confidence 579999999999999999999999887521 23333433333 2222221 00
Q ss_pred -cCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEc-ccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec
Q 010322 221 -AAGAVSVSSAAVELALMKLPESSHATARMLVIG-AGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK 298 (513)
Q Consensus 221 -~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIG-aG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~ 298 (513)
...+...++.+ ..... ...+|++|+|+| +|++|.++++.++..|+ +|+++++++++. ++++++|.. ..+.
T Consensus 128 ~~~~~~~ta~~~---l~~~~--~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~-~~~~~~ga~-~~~~ 199 (334)
T 3qwb_A 128 AGLLQVLTALSF---TNEAY--HVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKL-KIAKEYGAE-YLIN 199 (334)
T ss_dssp HHHHHHHHHHHH---HHTTS--CCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHH-HHHHHTTCS-EEEE
T ss_pred hhhhHHHHHHHH---HHHhc--cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHcCCc-EEEe
Confidence 00011112222 11211 234799999999 69999999999999999 599999999888 577888753 2222
Q ss_pred cc-chHH----hhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 299 PL-SEML----SCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 299 ~~-~~~~----~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.. ++.. +.. .++|+||+|++.. .+ ...++.+. ++|+.+.++.
T Consensus 200 ~~~~~~~~~~~~~~~~~g~D~vid~~g~~-~~--~~~~~~l~-----~~G~iv~~G~ 248 (334)
T 3qwb_A 200 ASKEDILRQVLKFTNGKGVDASFDSVGKD-TF--EISLAALK-----RKGVFVSFGN 248 (334)
T ss_dssp TTTSCHHHHHHHHTTTSCEEEEEECCGGG-GH--HHHHHHEE-----EEEEEEECCC
T ss_pred CCCchHHHHHHHHhCCCCceEEEECCChH-HH--HHHHHHhc-----cCCEEEEEcC
Confidence 11 2222 222 3699999999973 22 33444432 3566666654
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=9.5e-08 Score=98.08 Aligned_cols=163 Identities=17% Similarity=0.161 Sum_probs=105.0
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHh--------hCcccccccccc-CC
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAIS--------VGKRVRTETNIA-AG 223 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~--------v~k~Vr~et~i~-~~ 223 (513)
..|||+++.+.+|+++++.+-+|+..+... ..++.|++++. +|+.+..+.... ..
T Consensus 90 v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~----------------~~~G~~aey~~v~~~~~~~~P~~l~~~~aA~l~~ 153 (351)
T 1yb5_A 90 TPGSDVAGVIEAVGDNASAFKKGDRVFTSS----------------TISGGYAEYALAADHTVYKLPEKLDFKQGAAIGI 153 (351)
T ss_dssp CCCSCEEEEEEEECTTCTTCCTTCEEEESC----------------CSSCSSBSEEEEEGGGEEECCTTSCHHHHTTTHH
T ss_pred cCCceeEEEEEEECCCCCCCCCCCEEEEeC----------------CCCCcceeEEEECHHHeEECCCCCCHHHHHhhhh
Confidence 479999999999999999999999887532 01233433333 333333333221 23
Q ss_pred CchHHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-c
Q 010322 224 AVSVSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL-S 301 (513)
Q Consensus 224 ~~Sva~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~-~ 301 (513)
+.+++++++.. .. ....|++|+|+|+ |++|.++++.++..|+ +|+++++++++.+ +++++|.. ..+... +
T Consensus 154 ~~~ta~~al~~---~~--~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~-~~~~~ga~-~~~d~~~~ 225 (351)
T 1yb5_A 154 PYFTAYRALIH---SA--CVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQK-IVLQNGAH-EVFNHREV 225 (351)
T ss_dssp HHHHHHHHHHT---TS--CCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHH-HHHHTTCS-EEEETTST
T ss_pred HHHHHHHHHHH---hh--CCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHH-HHHHcCCC-EEEeCCCc
Confidence 55566666531 11 2347899999998 9999999999999999 5999999998884 67777742 122211 1
Q ss_pred hH----Hhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 302 EM----LSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 302 ~~----~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
+. .+.. .++|+||+|++.+. + ...++.+. ++|+.+.++
T Consensus 226 ~~~~~~~~~~~~~~~D~vi~~~G~~~-~--~~~~~~l~-----~~G~iv~~g 269 (351)
T 1yb5_A 226 NYIDKIKKYVGEKGIDIIIEMLANVN-L--SKDLSLLS-----HGGRVIVVG 269 (351)
T ss_dssp THHHHHHHHHCTTCEEEEEESCHHHH-H--HHHHHHEE-----EEEEEEECC
T ss_pred hHHHHHHHHcCCCCcEEEEECCChHH-H--HHHHHhcc-----CCCEEEEEe
Confidence 22 2222 26999999998642 2 33444332 356566655
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.7e-07 Score=96.53 Aligned_cols=162 Identities=15% Similarity=0.142 Sum_probs=102.3
Q ss_pred hcCCceeeeeeeeccCCC-CcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCcc----cc---ccccccCCC
Q 010322 153 LYNKDATQHLFEVSAGLD-SLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKR----VR---TETNIAAGA 224 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGld-S~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~----Vr---~et~i~~~~ 224 (513)
..|||+++.+.+|+++++ .+-+|+..+... ++.|++++.++.. ++ .+......+
T Consensus 86 i~G~E~~G~V~~vG~~V~~~~~vGdrV~~~~------------------~G~~aey~~v~~~~~~~~P~~~~~aaal~~~ 147 (362)
T 2c0c_A 86 DIGFEGIGEVVALGLSASARYTVGQAVAYMA------------------PGSFAEYTVVPASIATPVPSVKPEYLTLLVS 147 (362)
T ss_dssp ECCSEEEEEEEEECTTGGGTCCTTCEEEEEC------------------SCCSBSEEEEEGGGCEECSSSCHHHHTTTTH
T ss_pred CCCceeEEEEEEECCCccCCCCCCCEEEEcc------------------CCcceeEEEEcHHHeEECCCCchHhhcccch
Confidence 479999999999999999 999999887531 1233333332221 11 111122234
Q ss_pred chHHHHHHHHHHhhCCCCCCCCCeEEEEc-ccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-ch
Q 010322 225 VSVSSAAVELALMKLPESSHATARMLVIG-AGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL-SE 302 (513)
Q Consensus 225 ~Sva~~Av~la~~~~~~~~l~g~~VlVIG-aG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~-~~ 302 (513)
..++++++... . ....|++|+|+| +|++|.++++.++..|+ +|+++++++++. ++++++|.. ..+... ++
T Consensus 148 ~~ta~~al~~~---~--~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~-~~~~~~Ga~-~~~~~~~~~ 219 (362)
T 2c0c_A 148 GTTAYISLKEL---G--GLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKS-AFLKSLGCD-RPINYKTEP 219 (362)
T ss_dssp HHHHHHHHHHH---T--CCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHH-HHHHHTTCS-EEEETTTSC
T ss_pred HHHHHHHHHHh---c--CCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHH-HHHHHcCCc-EEEecCChh
Confidence 55566665322 1 234789999999 59999999999999999 599999998887 556678753 222211 12
Q ss_pred HHhhc-----CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 303 MLSCA-----ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 303 ~~~~l-----~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
..+.+ .++|+||+|++.. .+ ...++.+. ++|+.+++..
T Consensus 220 ~~~~~~~~~~~g~D~vid~~g~~-~~--~~~~~~l~-----~~G~iv~~g~ 262 (362)
T 2c0c_A 220 VGTVLKQEYPEGVDVVYESVGGA-MF--DLAVDALA-----TKGRLIVIGF 262 (362)
T ss_dssp HHHHHHHHCTTCEEEEEECSCTH-HH--HHHHHHEE-----EEEEEEECCC
T ss_pred HHHHHHHhcCCCCCEEEECCCHH-HH--HHHHHHHh-----cCCEEEEEeC
Confidence 22211 3699999999862 21 33444332 3565555553
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-06 Score=90.47 Aligned_cols=94 Identities=15% Similarity=0.170 Sum_probs=73.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.+.|++|+|+|+|.+|+.+++.|+..|++ |+++++++.++. .+...|. .+ .++.+.+..+|+||.||+.++
T Consensus 217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga~-Viv~D~dp~ra~-~A~~~G~---~v---~~Leeal~~ADIVi~atgt~~- 287 (435)
T 3gvp_A 217 MFGGKQVVVCGYGEVGKGCCAALKAMGSI-VYVTEIDPICAL-QACMDGF---RL---VKLNEVIRQVDIVITCTGNKN- 287 (435)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHH-HHHHTTC---EE---CCHHHHTTTCSEEEECSSCSC-
T ss_pred eecCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEeCChhhhH-HHHHcCC---Ee---ccHHHHHhcCCEEEECCCCcc-
Confidence 57899999999999999999999999995 999999987763 3444442 23 245677889999999977654
Q ss_pred CCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 323 LFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 323 vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
+++.+.+..+. ...++++++.+.
T Consensus 288 lI~~e~l~~MK-------~gailINvgrg~ 310 (435)
T 3gvp_A 288 VVTREHLDRMK-------NSCIVCNMGHSN 310 (435)
T ss_dssp SBCHHHHHHSC-------TTEEEEECSSTT
T ss_pred cCCHHHHHhcC-------CCcEEEEecCCC
Confidence 67878887764 237889998653
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=7.3e-07 Score=88.87 Aligned_cols=160 Identities=16% Similarity=0.148 Sum_probs=98.7
Q ss_pred hhhHHHH-----hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHh---Hh---cCcccc-----hh---hHHHHH
Q 010322 146 LCEHRFL-----LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVG---QG---VVGFGR-----NI---SGLFKH 206 (513)
Q Consensus 146 ~~~~~~~-----~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a---~~---~~~~g~-----~L---~~lf~~ 206 (513)
+++..|. ..|.++++..+.|.. ..+..+.+.+ +. .+.+++ .+ ..+...
T Consensus 12 ~h~~~~~~~~~~~~g~~~~y~~~~v~~-------------~~~~~~~~~~~~~~~~~g~~~t~~~~~G~~~~~~~~~~~~ 78 (287)
T 1lu9_A 12 ATPSVFDVVVGYDGGADHITGYGNVTP-------------DNVGAYVDGTIYTRGGKEKQSTAIFVGGGDMAAGERVFEA 78 (287)
T ss_dssp SSCCHHHHHHHHHTTCSEEEEESSCCT-------------TTHHHHHHHHHSSCCGGGGGGEEEEEECSCHHHHHHHHHH
T ss_pred CCCCchhhheeeccCcceEeccCCcCH-------------HHHHhhhcceEEecCccccccceEEEccchHHHHHHHHHH
Confidence 3445555 589999999998775 4566655554 11 111222 12 233333
Q ss_pred HHh--hCc--cccccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEc-ccHHHHHHHHHHHHcCCCeEEEEeCCHH
Q 010322 207 AIS--VGK--RVRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIG-AGKMGKLVIKHLVAKGCTKMVVVNRSEE 281 (513)
Q Consensus 207 ai~--v~k--~Vr~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIG-aG~mG~~ia~~L~~~G~~~V~v~nRs~~ 281 (513)
+-. ++. .+......+.+++..++.. .+ +..++ .++.|++++|+| +|++|+.++..|...|++ |++++|+.+
T Consensus 79 ~~~~~~gavnt~~~~~~~G~nTd~~g~~~-~l-~~~~~-~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~-V~i~~R~~~ 154 (287)
T 1lu9_A 79 VKKRFFGPFRVSCMLDSNGSNTTAAAGVA-LV-VKAAG-GSVKGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGRKLD 154 (287)
T ss_dssp HHHHCBTTBCCEEEECSTTHHHHHHHHHH-HH-HHHTT-SCCTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESSHH
T ss_pred HHHhcCCCeEEEEecCCCcCCchHHHHHH-HH-HHhhc-cCCCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEECCHH
Confidence 321 132 1111223455566666654 22 22201 357899999999 899999999999999986 999999999
Q ss_pred HHHHHHHHhCC---cce---eecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 282 RVAAICEELNG---VEI---IYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 282 ra~~la~~~g~---~~~---~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
+++++++++.. ... .+...+++.+.+..+|+||+||+.+..
T Consensus 155 ~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~ag~g~~ 201 (287)
T 1lu9_A 155 KAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAGAIGLE 201 (287)
T ss_dssp HHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECCCTTCC
T ss_pred HHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEECCCcccc
Confidence 98888776521 111 122223456667889999999987543
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=98.48 E-value=4.9e-08 Score=103.80 Aligned_cols=182 Identities=16% Similarity=0.184 Sum_probs=110.1
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH---------HHHHHHhHhcCcccchh-hHHHHHHHhhCcc--------c
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV---------KQVVKVGQGVVGFGRNI-SGLFKHAISVGKR--------V 214 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv---------k~A~~~a~~~~~~g~~L-~~lf~~ai~v~k~--------V 214 (513)
..|||+++.+.+|+++++++.+|+.++.... ...+..|......|... ++.|++++.++.. +
T Consensus 120 v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~~c~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~~P~~l 199 (456)
T 3krt_A 120 VIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHL 199 (456)
T ss_dssp ECCSCCEEEEEEECTTCCSCCTTCEEEECCEECCCCSGGGTTSGGGCTTCEETTTTSSSCSSBSEEEEEGGGEEECCTTS
T ss_pred cccceeEEEEEEECCCCCCCCCCCEEEEeCCcccccccccccccccCccccccccCCCCCcccceEEechHHeeECCCCC
Confidence 5799999999999999999999999886210 01122333333334322 3777777666542 2
Q ss_pred cccccccC-CCchHHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC
Q 010322 215 RTETNIAA-GAVSVSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG 292 (513)
Q Consensus 215 r~et~i~~-~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~ 292 (513)
..+..... .+..+++.++... ... ....|++|+|+|+ |++|.++++.++..|++ ++++.+++++. ++++++|.
T Consensus 200 ~~~~aa~l~~~~~ta~~al~~~-~~~--~~~~g~~VlV~GasG~vG~~avqlak~~Ga~-vi~~~~~~~~~-~~~~~lGa 274 (456)
T 3krt_A 200 SWEEAAAPGLVNSTAYRQLVSR-NGA--GMKQGDNVLIWGASGGLGSYATQFALAGGAN-PICVVSSPQKA-EICRAMGA 274 (456)
T ss_dssp CHHHHHSSHHHHHHHHHHHTST-TTT--CCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSHHHH-HHHHHHTC
T ss_pred CHHHHHHhhhHHHHHHHHHHhh-ccc--CCCCCCEEEEECCCCHHHHHHHHHHHHcCCe-EEEEECCHHHH-HHHHhhCC
Confidence 22222111 1223333332110 001 2347999999999 99999999999999995 77778998888 66788885
Q ss_pred cceeeccc----------------------chHHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 293 VEIIYKPL----------------------SEMLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 293 ~~~~~~~~----------------------~~~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.. .+... +.+.+.. .++|+||+|++.. .+ ...+..+. ++|..+.+..
T Consensus 275 ~~-vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~~-~~--~~~~~~l~-----~~G~iv~~G~ 345 (456)
T 3krt_A 275 EA-IIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRE-TF--GASVFVTR-----KGGTITTCAS 345 (456)
T ss_dssp CE-EEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEECSCHH-HH--HHHHHHEE-----EEEEEEESCC
T ss_pred cE-EEecCcCcccccccccccchHHHHHHHHHHHHHhCCCCCcEEEEcCCch-hH--HHHHHHhh-----CCcEEEEEec
Confidence 31 22111 1122222 4799999999973 22 33444332 3565555553
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.8e-07 Score=89.99 Aligned_cols=93 Identities=19% Similarity=0.291 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHhhCCCCCCCCCeEEEEcccH-HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHH
Q 010322 226 SVSSAAVELALMKLPESSHATARMLVIGAGK-MGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEML 304 (513)
Q Consensus 226 Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~-mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~ 304 (513)
..+..++++.+... .++.|++++|||+|. +|+.++..|...|++ |++++++. .++.
T Consensus 143 cTp~gv~~lL~~~~--i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAt-Vtv~hs~t--------------------~~L~ 199 (285)
T 3l07_A 143 CTPKGIMTMLREYG--IKTEGAYAVVVGASNVVGKPVSQLLLNAKAT-VTTCHRFT--------------------TDLK 199 (285)
T ss_dssp HHHHHHHHHHHHTT--CCCTTCEEEEECCCTTTHHHHHHHHHHTTCE-EEEECTTC--------------------SSHH
T ss_pred CCHHHHHHHHHHhC--CCCCCCEEEEECCCchhHHHHHHHHHHCCCe-EEEEeCCc--------------------hhHH
Confidence 34555667766542 578999999999987 699999999999995 99998741 2345
Q ss_pred hhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 305 SCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 305 ~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
+.+..||+||+|||.|.. ++.++++. | .++||++++|
T Consensus 200 ~~~~~ADIVI~Avg~p~~-I~~~~vk~---------G-avVIDvgi~~ 236 (285)
T 3l07_A 200 SHTTKADILIVAVGKPNF-ITADMVKE---------G-AVVIDVGINH 236 (285)
T ss_dssp HHHTTCSEEEECCCCTTC-BCGGGSCT---------T-CEEEECCCEE
T ss_pred HhcccCCEEEECCCCCCC-CCHHHcCC---------C-cEEEEecccC
Confidence 567899999999999877 67777632 2 7999999876
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=98.45 E-value=9e-08 Score=99.31 Aligned_cols=149 Identities=11% Similarity=0.151 Sum_probs=96.0
Q ss_pred hcCCceeeeeeeeccCC-CCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccc--cCCCchHHH
Q 010322 153 LYNKDATQHLFEVSAGL-DSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNI--AAGAVSVSS 229 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGl-dS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i--~~~~~Sva~ 229 (513)
..|||+++.+.+|++++ ..+.+|+..+... .|.+..+.----...+.+++.+..+... ...+. .++
T Consensus 93 i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~----------~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~-ta~ 161 (379)
T 3iup_A 93 PVGNEGAGVVVEAGSSPAAQALMGKTVAAIG----------GAMYSQYRCIPADQCLVLPEGATPADGASSFVNPL-TAL 161 (379)
T ss_dssp ECCSCEEEEEEEECSSHHHHTTTTCEEEECC----------SCCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHH-HHH
T ss_pred cceeeeEEEEEEeCCCcccCCCCCCEEEecC----------CCcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHH-HHH
Confidence 46999999999999998 7889999887632 1222211100001122333334333332 22233 245
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEE--cccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-chHHhh
Q 010322 230 AAVELALMKLPESSHATARMLVI--GAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL-SEMLSC 306 (513)
Q Consensus 230 ~Av~la~~~~~~~~l~g~~VlVI--GaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~-~~~~~~ 306 (513)
++++.+. ..|++|+|+ |+|++|.++++.++..|+ +|+++++++++. ++++++|... .+... +++.+.
T Consensus 162 ~~~~~~~-------~~g~~vlV~gag~G~vG~~a~q~a~~~Ga-~Vi~~~~~~~~~-~~~~~lGa~~-~~~~~~~~~~~~ 231 (379)
T 3iup_A 162 GMVETMR-------LEGHSALVHTAAASNLGQMLNQICLKDGI-KLVNIVRKQEQA-DLLKAQGAVH-VCNAASPTFMQD 231 (379)
T ss_dssp HHHHHHH-------HTTCSCEEESSTTSHHHHHHHHHHHHHTC-CEEEEESSHHHH-HHHHHTTCSC-EEETTSTTHHHH
T ss_pred HHHHHhc-------cCCCEEEEECCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHhCCCcE-EEeCCChHHHHH
Confidence 5655543 368899999 789999999999999999 499999999888 6777888532 22221 222222
Q ss_pred c------CCCcEEEEcCCCCcc
Q 010322 307 A------ADADVVFTSTASEAP 322 (513)
Q Consensus 307 l------~~aDVVI~AT~s~~~ 322 (513)
+ .++|+||+|++.+..
T Consensus 232 v~~~t~~~g~d~v~d~~g~~~~ 253 (379)
T 3iup_A 232 LTEALVSTGATIAFDATGGGKL 253 (379)
T ss_dssp HHHHHHHHCCCEEEESCEEESH
T ss_pred HHHHhcCCCceEEEECCCchhh
Confidence 2 379999999998643
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-07 Score=96.30 Aligned_cols=168 Identities=14% Similarity=0.066 Sum_probs=103.3
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccc-----cccccccCCCchH
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRV-----RTETNIAAGAVSV 227 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~V-----r~et~i~~~~~Sv 227 (513)
..|||+++.+.+ ++++.+.+|+..+... |.+..+.----...+.+++.+ ..+.+....+.++
T Consensus 79 v~G~E~~G~V~~--~~v~~~~vGdrV~~~~-----------G~~aey~~v~~~~~~~iP~~~~~~~~~~~~a~l~~~~~t 145 (357)
T 2zb4_A 79 VVDGGGIGIIEE--SKHTNLTKGDFVTSFY-----------WPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLT 145 (357)
T ss_dssp BCEEEEEEEEEE--ECSTTCCTTCEEEEEE-----------EESBSEEEEEGGGCEECCGGGGTTCGGGGGTTTSHHHHH
T ss_pred cccccEEEEEEe--cCCCCCCCCCEEEecC-----------CCcEEEEEEchHHceecCcccccCchhHHHHhcccHHHH
Confidence 469999999999 8999999999887641 121111100001123344444 2222222335566
Q ss_pred HHHHH-HHHHhhCCCCCCCC--CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-ch
Q 010322 228 SSAAV-ELALMKLPESSHAT--ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL-SE 302 (513)
Q Consensus 228 a~~Av-~la~~~~~~~~l~g--~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~-~~ 302 (513)
+++++ +.+ ....| ++|+|+|+ |++|.++++.++..|+.+|+++++++++.+.+.+++|.. ..+... ++
T Consensus 146 a~~al~~~~------~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~-~~~d~~~~~ 218 (357)
T 2zb4_A 146 SLIGIQEKG------HITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFD-AAINYKKDN 218 (357)
T ss_dssp HHHHHHHHS------CCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCS-EEEETTTSC
T ss_pred HHHHHHHhc------CCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc-eEEecCchH
Confidence 77776 332 23468 99999998 999999999999999967999999998885555547642 222211 12
Q ss_pred HH----hhc-CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 303 ML----SCA-ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 303 ~~----~~l-~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.. +.. .++|+||+|++. ..+ ...++.+. ++|+.++++.
T Consensus 219 ~~~~~~~~~~~~~d~vi~~~G~-~~~--~~~~~~l~-----~~G~iv~~G~ 261 (357)
T 2zb4_A 219 VAEQLRESCPAGVDVYFDNVGG-NIS--DTVISQMN-----ENSHIILCGQ 261 (357)
T ss_dssp HHHHHHHHCTTCEEEEEESCCH-HHH--HHHHHTEE-----EEEEEEECCC
T ss_pred HHHHHHHhcCCCCCEEEECCCH-HHH--HHHHHHhc-----cCcEEEEECC
Confidence 22 222 269999999985 222 33444332 3566666654
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.3e-07 Score=94.78 Aligned_cols=147 Identities=12% Similarity=0.162 Sum_probs=94.1
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCc--------cccccccccC-
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGK--------RVRTETNIAA- 222 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~Vr~et~i~~- 222 (513)
...|||+++.+.+|+++++.+.+|+..+... .+.. ..++.|++++.++. .+..+.....
T Consensus 65 ~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~----------~g~~--~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~ 132 (343)
T 3gaz_A 65 AILGMDLAGTVVAVGPEVDSFRVGDAVFGLT----------GGVG--GLQGTHAQFAAVDARLLASKPAALTMRQASVLP 132 (343)
T ss_dssp BCCCCEEEEEEEEECTTCCSCCTTCEEEEEC----------CSST--TCCCSSBSEEEEEGGGEEECCTTSCHHHHHTSH
T ss_pred cccCcceEEEEEEECCCCCCCCCCCEEEEEe----------CCCC--CCCcceeeEEEecHHHeeeCCCCCCHHHHHHhh
Confidence 3579999999999999999999999887521 0100 12455555554433 2222222111
Q ss_pred CCchHHHHHHHHHHhhCCCCCCCCCeEEEEc-ccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc
Q 010322 223 GAVSVSSAAVELALMKLPESSHATARMLVIG-AGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS 301 (513)
Q Consensus 223 ~~~Sva~~Av~la~~~~~~~~l~g~~VlVIG-aG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~ 301 (513)
.+..+++.++. ... ....|++|+|+| +|++|.++++.++..|+ +|+++ +++++. ++++++|.. . +...+
T Consensus 133 ~~~~ta~~~l~---~~~--~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~-~~~~~lGa~-~-i~~~~ 202 (343)
T 3gaz_A 133 LVFITAWEGLV---DRA--QVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDL-EYVRDLGAT-P-IDASR 202 (343)
T ss_dssp HHHHHHHHHHT---TTT--CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHH-HHHHHHTSE-E-EETTS
T ss_pred hhHHHHHHHHH---Hhc--CCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHH-HHHHHcCCC-E-eccCC
Confidence 11123444431 111 234799999999 69999999999999999 58888 888887 567788753 2 33222
Q ss_pred hHHhh----c--CCCcEEEEcCCCC
Q 010322 302 EMLSC----A--ADADVVFTSTASE 320 (513)
Q Consensus 302 ~~~~~----l--~~aDVVI~AT~s~ 320 (513)
+..+. . .++|+||+|++.+
T Consensus 203 ~~~~~~~~~~~~~g~D~vid~~g~~ 227 (343)
T 3gaz_A 203 EPEDYAAEHTAGQGFDLVYDTLGGP 227 (343)
T ss_dssp CHHHHHHHHHTTSCEEEEEESSCTH
T ss_pred CHHHHHHHHhcCCCceEEEECCCcH
Confidence 33222 1 3799999999963
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-07 Score=95.81 Aligned_cols=165 Identities=13% Similarity=0.184 Sum_probs=101.4
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhh--------CccccccccccCC-
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISV--------GKRVRTETNIAAG- 223 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v--------~k~Vr~et~i~~~- 223 (513)
..|||+++.+.+|+++++.+.+|+..+.... . ++.|++++.+ |+.+..+......
T Consensus 87 v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~--------~--------~G~~aey~~v~~~~~~~iP~~l~~~~Aa~l~~ 150 (357)
T 1zsy_A 87 VGGNEGVAQVVAVGSNVTGLKPGDWVIPANA--------G--------LGTWRTEAVFSEEALIQVPSDIPLQSAATLGV 150 (357)
T ss_dssp ECCSCCEEEEEEECTTCCSCCTTCEEEESSS--------C--------SCCSBSEEEEEGGGEEEECSSSCHHHHHHTTS
T ss_pred cccceEEEEEEEeCCCCCCCCCCCEEEEcCC--------C--------CccceeEEecCHHHcEECCCCCCHHHHhhhcc
Confidence 5799999999999999999999998875321 1 2333333333 3333333322211
Q ss_pred CchHHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHH--HHHHHHHHhCCcceeeccc
Q 010322 224 AVSVSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEE--RVAAICEELNGVEIIYKPL 300 (513)
Q Consensus 224 ~~Sva~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~--ra~~la~~~g~~~~~~~~~ 300 (513)
+..++++++.. .. ....|++|+|+|+ |++|.++++.++..|++.|.+++++.. ...++++++|... .+...
T Consensus 151 ~~~ta~~~l~~---~~--~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~-vi~~~ 224 (357)
T 1zsy_A 151 NPCTAYRMLMD---FE--QLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEH-VITEE 224 (357)
T ss_dssp HHHHHHHHHHH---SS--CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSE-EEEHH
T ss_pred cHHHHHHHHHH---Hh--ccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcE-EEecC
Confidence 23355555432 11 2347899999998 999999999999999976666655432 2236777888532 22211
Q ss_pred ----chHHhhcC---CCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 301 ----SEMLSCAA---DADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 301 ----~~~~~~l~---~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
+++.+... ++|+||+|++.+.. .+.++.+. ++|+.+.++
T Consensus 225 ~~~~~~~~~~~~~~~~~Dvvid~~g~~~~---~~~~~~l~-----~~G~iv~~G 270 (357)
T 1zsy_A 225 ELRRPEMKNFFKDMPQPRLALNCVGGKSS---TELLRQLA-----RGGTMVTYG 270 (357)
T ss_dssp HHHSGGGGGTTSSSCCCSEEEESSCHHHH---HHHHTTSC-----TTCEEEECC
T ss_pred cchHHHHHHHHhCCCCceEEEECCCcHHH---HHHHHhhC-----CCCEEEEEe
Confidence 12222222 58999999987543 23454443 467666664
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.41 E-value=8.6e-07 Score=88.19 Aligned_cols=93 Identities=17% Similarity=0.307 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHhhCCCCCCCCCeEEEEcccH-HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHH
Q 010322 226 SVSSAAVELALMKLPESSHATARMLVIGAGK-MGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEML 304 (513)
Q Consensus 226 Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~-mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~ 304 (513)
..+..++++.+... .++.|++++|||+|. +|+.++..|...|++ |++++++. .++.
T Consensus 142 cTp~gv~~lL~~~~--i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAt-Vtv~h~~t--------------------~~L~ 198 (285)
T 3p2o_A 142 CTPLGVMKLLKAYE--IDLEGKDAVIIGASNIVGRPMATMLLNAGAT-VSVCHIKT--------------------KDLS 198 (285)
T ss_dssp HHHHHHHHHHHHTT--CCCTTCEEEEECCCTTTHHHHHHHHHHTTCE-EEEECTTC--------------------SCHH
T ss_pred CCHHHHHHHHHHhC--CCCCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCCc--------------------hhHH
Confidence 34555667766542 578999999999987 699999999999995 99998742 2345
Q ss_pred hhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 305 SCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 305 ~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
+.+..||+||+|||.+.. ++.++++. | .++||++++|
T Consensus 199 ~~~~~ADIVI~Avg~p~~-I~~~~vk~---------G-avVIDVgi~~ 235 (285)
T 3p2o_A 199 LYTRQADLIIVAAGCVNL-LRSDMVKE---------G-VIVVDVGINR 235 (285)
T ss_dssp HHHTTCSEEEECSSCTTC-BCGGGSCT---------T-EEEEECCCEE
T ss_pred HHhhcCCEEEECCCCCCc-CCHHHcCC---------C-eEEEEeccCc
Confidence 567899999999999876 67777632 2 8999999876
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-07 Score=97.60 Aligned_cols=173 Identities=13% Similarity=0.117 Sum_probs=100.6
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCc-----------ccccccccc
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGK-----------RVRTETNIA 221 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k-----------~Vr~et~i~ 221 (513)
..|||+++.+.+|+++++.+.+|+..+.... ..|.+..+.----...+.+|+ .+..+....
T Consensus 75 i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~--------~~G~~aey~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~ 146 (364)
T 1gu7_A 75 PCGNEGLFEVIKVGSNVSSLEAGDWVIPSHV--------NFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGAT 146 (364)
T ss_dssp ECCSCCEEEEEEECTTCCSCCTTCEEEESSS--------CCCCSBSEEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHT
T ss_pred ccCceeEEEEEEeCCCCCcCCCCCEEEecCC--------CCCcchheEecCHHHeEEcCCccccccccccCCCCHHHHhh
Confidence 4699999999999999999999998875320 112222211000011222333 233332222
Q ss_pred CC-CchHHHHHHHHHHhhCCCCCCCC-CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHH---HHHHHHHhCCcce
Q 010322 222 AG-AVSVSSAAVELALMKLPESSHAT-ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEER---VAAICEELNGVEI 295 (513)
Q Consensus 222 ~~-~~Sva~~Av~la~~~~~~~~l~g-~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~r---a~~la~~~g~~~~ 295 (513)
.. +..++++++... . ....| ++|+|+|+ |++|.++++.++..|++ ++++.++.++ ..++++++|...
T Consensus 147 l~~~~~ta~~~l~~~---~--~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~-vi~~~~~~~~~~~~~~~~~~lGa~~- 219 (364)
T 1gu7_A 147 ISVNPLTAYLMLTHY---V--KLTPGKDWFIQNGGTSAVGKYASQIGKLLNFN-SISVIRDRPNLDEVVASLKELGATQ- 219 (364)
T ss_dssp CTTHHHHHHHHHHSS---S--CCCTTTCEEEESCTTSHHHHHHHHHHHHHTCE-EEEEECCCTTHHHHHHHHHHHTCSE-
T ss_pred ccccHHHHHHHHHHh---h--ccCCCCcEEEECCCCcHHHHHHHHHHHHCCCE-EEEEecCccccHHHHHHHHhcCCeE-
Confidence 22 345566654321 1 12368 99999998 99999999999999996 5555544332 235567787531
Q ss_pred eeccc----ch----HHhhc----CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 296 IYKPL----SE----MLSCA----ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 296 ~~~~~----~~----~~~~l----~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.+... ++ +.+.. .++|+||+|++.+... ..++.+. ++|+.+.++.
T Consensus 220 vi~~~~~~~~~~~~~i~~~t~~~~~g~Dvvid~~G~~~~~---~~~~~l~-----~~G~~v~~g~ 276 (364)
T 1gu7_A 220 VITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSST---GIARKLN-----NNGLMLTYGG 276 (364)
T ss_dssp EEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHH---HHHHTSC-----TTCEEEECCC
T ss_pred EEecCccchHHHHHHHHHHhhccCCCceEEEECCCchhHH---HHHHHhc-----cCCEEEEecC
Confidence 22211 12 12211 3799999999976432 3444443 3676666653
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.1e-07 Score=96.20 Aligned_cols=174 Identities=13% Similarity=0.152 Sum_probs=105.8
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCc--------cccccccccCCC
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGK--------RVRTETNIAAGA 224 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~Vr~et~i~~~~ 224 (513)
..|||+++.+.+|+++++.+.+|+..+... ..|+ .|...++.|++++.++. .+..+..... |
T Consensus 65 v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~-----~~~~----~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~-~ 134 (371)
T 3gqv_A 65 FLGTDYAGTVVAVGSDVTHIQVGDRVYGAQ-----NEMC----PRTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAAL-P 134 (371)
T ss_dssp CCCSEEEEEEEEECTTCCSCCTTCEEEEEC-----CTTC----TTCTTCCSSBSEEECCTTCEEECCTTCCHHHHHTS-H
T ss_pred cCccccEEEEEEeCCCCCCCCCCCEEEEec-----cCCC----CCCCCCCcCcCeEEEchhheEECCCCCCHHHHhhh-h
Confidence 479999999999999999999999885320 0111 12234566666655544 2222222222 3
Q ss_pred ch--HHHHHHHHH-HhhCC----CCC---CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc
Q 010322 225 VS--VSSAAVELA-LMKLP----ESS---HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV 293 (513)
Q Consensus 225 ~S--va~~Av~la-~~~~~----~~~---l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~ 293 (513)
.+ ++++++... .. ++ ... ..|++|+|+|+ |++|.++++.++..|++ |+++. +++|. ++++++|..
T Consensus 135 ~~~~ta~~~l~~~~~~-~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~-Vi~~~-~~~~~-~~~~~lGa~ 210 (371)
T 3gqv_A 135 AGISTAGLAMKLLGLP-LPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYI-PIATC-SPHNF-DLAKSRGAE 210 (371)
T ss_dssp HHHHHHHHHHHHHTCC-CCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEE-CGGGH-HHHHHTTCS
T ss_pred hhHHHHHHHHHhhccC-CCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCCE-EEEEe-CHHHH-HHHHHcCCc
Confidence 33 344444322 11 00 001 57899999999 99999999999999995 66664 67777 688889853
Q ss_pred ceeeccc-chHHh----hc-CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEe
Q 010322 294 EIIYKPL-SEMLS----CA-ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFID 347 (513)
Q Consensus 294 ~~~~~~~-~~~~~----~l-~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiD 347 (513)
..+... +++.+ .. .++|+||+|++.+..+ ...++.+.+ ++|+.+.++
T Consensus 211 -~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~~~~~--~~~~~~l~~----~~G~iv~~g 263 (371)
T 3gqv_A 211 -EVFDYRAPNLAQTIRTYTKNNLRYALDCITNVEST--TFCFAAIGR----AGGHYVSLN 263 (371)
T ss_dssp -EEEETTSTTHHHHHHHHTTTCCCEEEESSCSHHHH--HHHHHHSCT----TCEEEEESS
T ss_pred -EEEECCCchHHHHHHHHccCCccEEEECCCchHHH--HHHHHHhhc----CCCEEEEEe
Confidence 222211 22222 21 3599999999986543 334444321 356555554
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.5e-06 Score=86.96 Aligned_cols=93 Identities=15% Similarity=0.217 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcccH-HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHh
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGAGK-MGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLS 305 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGaG~-mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~ 305 (513)
.+...+++.+.. + .++.|++|+|||+|. +|+.++..|...|++ |++++++. .++.+
T Consensus 148 Tp~gi~~ll~~~-~-i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAt-Vtv~hs~t--------------------~~L~~ 204 (301)
T 1a4i_A 148 TPKGCLELIKET-G-VPIAGRHAVVVGRSKIVGAPMHDLLLWNNAT-VTTCHSKT--------------------AHLDE 204 (301)
T ss_dssp HHHHHHHHHHTT-T-CCCTTCEEEEECCCTTTHHHHHHHHHHTTCE-EEEECTTC--------------------SSHHH
T ss_pred hHHHHHHHHHHc-C-CCCCCCEEEEECCCchHHHHHHHHHHhCCCe-EEEEECCc--------------------ccHHH
Confidence 444556666543 2 578999999999996 699999999999985 99997541 34566
Q ss_pred hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCC
Q 010322 306 CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRN 353 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrd 353 (513)
.+..||+||+|++.|.. ++.++++. | .++||++++|.
T Consensus 205 ~~~~ADIVI~Avg~p~~-I~~~~vk~---------G-avVIDVgi~~~ 241 (301)
T 1a4i_A 205 EVNKGDILVVATGQPEM-VKGEWIKP---------G-AIVIDCGINYV 241 (301)
T ss_dssp HHTTCSEEEECCCCTTC-BCGGGSCT---------T-CEEEECCCBC-
T ss_pred HhccCCEEEECCCCccc-CCHHHcCC---------C-cEEEEccCCCc
Confidence 67899999999999886 78777642 2 79999999873
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=5.7e-07 Score=91.29 Aligned_cols=157 Identities=13% Similarity=0.115 Sum_probs=99.9
Q ss_pred cCCc----eeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhh--------Cccccccc---
Q 010322 154 YNKD----ATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISV--------GKRVRTET--- 218 (513)
Q Consensus 154 ~G~e----av~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v--------~k~Vr~et--- 218 (513)
.||| +++.+.+ +|++.+.+|++.+.. | .|++++.+ |..+....
T Consensus 70 ~G~e~g~~~~G~V~~--~~v~~~~vGdrV~~~------------G--------~~aey~~v~~~~~~~~P~~~~~~~~a~ 127 (336)
T 4b7c_A 70 IGEVMRALGVGKVLV--SKHPGFQAGDYVNGA------------L--------GVQDYFIGEPKGFYKVDPSRAPLPRYL 127 (336)
T ss_dssp TTSBCCCEEEEEEEE--ECSTTCCTTCEEEEE------------C--------CSBSEEEECCTTCEEECTTTSCGGGGG
T ss_pred CCcccCCceEEEEEe--cCCCCCCCCCEEecc------------C--------CceEEEEechHHeEEcCCCCCchHHHh
Confidence 4666 7898887 578999999988752 2 23333333 33332222
Q ss_pred cccCCCchHHHHHH-HHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee
Q 010322 219 NIAAGAVSVSSAAV-ELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII 296 (513)
Q Consensus 219 ~i~~~~~Sva~~Av-~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~ 296 (513)
.....+.+++++++ +.+ ...+|++|+|+|+ |++|.++++.++..|+ +|+++++++++.+.+++++|.. ..
T Consensus 128 a~l~~~~~tA~~al~~~~------~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~-~~ 199 (336)
T 4b7c_A 128 SALGMTGMTAYFALLDVG------QPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEELGFD-GA 199 (336)
T ss_dssp TTTSHHHHHHHHHHHHTT------CCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCS-EE
T ss_pred hhcccHHHHHHHHHHHhc------CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCC-EE
Confidence 12223456677765 322 2347999999999 9999999999999999 6999999999986555788753 22
Q ss_pred eccc-chHHhh----c-CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 297 YKPL-SEMLSC----A-ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 297 ~~~~-~~~~~~----l-~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+... ++..+. . .++|+||+|++.+ .+ ...++.+. ++|+.++++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~-~~--~~~~~~l~-----~~G~iv~~G~ 249 (336)
T 4b7c_A 200 IDYKNEDLAAGLKRECPKGIDVFFDNVGGE-IL--DTVLTRIA-----FKARIVLCGA 249 (336)
T ss_dssp EETTTSCHHHHHHHHCTTCEEEEEESSCHH-HH--HHHHTTEE-----EEEEEEECCC
T ss_pred EECCCHHHHHHHHHhcCCCceEEEECCCcc-hH--HHHHHHHh-----hCCEEEEEee
Confidence 2211 122221 1 3699999999963 21 33444332 3566666654
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-06 Score=86.95 Aligned_cols=91 Identities=12% Similarity=0.240 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHhhCCCCCCCCCeEEEEcccH-HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHH
Q 010322 226 SVSSAAVELALMKLPESSHATARMLVIGAGK-MGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEML 304 (513)
Q Consensus 226 Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~-mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~ 304 (513)
.++...+++.+.. + +.|++|+|||+|. +|+.++..|...|++ |++++++. .++.
T Consensus 134 cTp~gv~~lL~~~---~-l~Gk~vvVvG~s~iVG~plA~lL~~~gAt-Vtv~~~~t--------------------~~L~ 188 (276)
T 3ngx_A 134 ATPRAVIDIMDYY---G-YHENTVTIVNRSPVVGRPLSMMLLNRNYT-VSVCHSKT--------------------KDIG 188 (276)
T ss_dssp HHHHHHHHHHHHH---T-CCSCEEEEECCCTTTHHHHHHHHHHTTCE-EEEECTTC--------------------SCHH
T ss_pred CcHHHHHHHHHHh---C-cCCCEEEEEcCChHHHHHHHHHHHHCCCe-EEEEeCCc--------------------ccHH
Confidence 3455556666543 4 8999999999986 899999999999995 99998741 2344
Q ss_pred hhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 305 SCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 305 ~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
+.+..||+||+|||.|.. ++.++++. | .++||++++|
T Consensus 189 ~~~~~ADIVI~Avg~p~~-I~~~~vk~---------G-avVIDvgi~~ 225 (276)
T 3ngx_A 189 SMTRSSKIVVVAVGRPGF-LNREMVTP---------G-SVVIDVGINY 225 (276)
T ss_dssp HHHHHSSEEEECSSCTTC-BCGGGCCT---------T-CEEEECCCEE
T ss_pred HhhccCCEEEECCCCCcc-ccHhhccC---------C-cEEEEeccCc
Confidence 556789999999999874 67777632 2 7999999876
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.5e-07 Score=94.67 Aligned_cols=162 Identities=8% Similarity=0.036 Sum_probs=94.9
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhh--------CccccccccccC-C
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISV--------GKRVRTETNIAA-G 223 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v--------~k~Vr~et~i~~-~ 223 (513)
..|||+++.+.+|+++++.+-+|+..+.-. .++.|++++.+ ++.+..+..... .
T Consensus 63 v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~-----------------~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~ 125 (349)
T 4a27_A 63 VPGFECSGIVEALGDSVKGYEIGDRVMAFV-----------------NYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPM 125 (349)
T ss_dssp CCCSEEEEEEEEECTTCCSCCTTCEEEEEC-----------------SSCCSBSEEEEEGGGEEECCTTSCHHHHHTSHH
T ss_pred cccceeEEEEEEeCCCCCCCCCCCEEEEec-----------------CCCcceEEEEecHHHeEECCCCCCHHHHHHHHH
Confidence 579999999999999999999999886421 12233333333 333332222211 1
Q ss_pred CchHHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccch
Q 010322 224 AVSVSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSE 302 (513)
Q Consensus 224 ~~Sva~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~ 302 (513)
+..++++++. ... ...+|++|+|+|+ |++|.++++.++..|..+|+.+. +.++. +++. +|.. ..+....+
T Consensus 126 ~~~ta~~~l~---~~~--~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~-~~~~-~ga~-~~~~~~~~ 196 (349)
T 4a27_A 126 NFVTAYVMLF---EVA--NLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKH-EAIK-DSVT-HLFDRNAD 196 (349)
T ss_dssp HHHHHHHHHH---TTS--CCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGH-HHHG-GGSS-EEEETTSC
T ss_pred HHHHHHHHHH---Hhc--CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHH-HHHH-cCCc-EEEcCCcc
Confidence 2334444431 111 2347999999999 99999999999888766687777 44566 3444 6642 22222122
Q ss_pred HHhhc-----CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 303 MLSCA-----ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 303 ~~~~l-----~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
..+.+ .++|+||+|++.+.. ...++.+. ++|+.++++.
T Consensus 197 ~~~~~~~~~~~g~Dvv~d~~g~~~~---~~~~~~l~-----~~G~~v~~G~ 239 (349)
T 4a27_A 197 YVQEVKRISAEGVDIVLDCLCGDNT---GKGLSLLK-----PLGTYILYGS 239 (349)
T ss_dssp HHHHHHHHCTTCEEEEEEECC----------CTTEE-----EEEEEEEEC-
T ss_pred HHHHHHHhcCCCceEEEECCCchhH---HHHHHHhh-----cCCEEEEECC
Confidence 22221 479999999987643 33444332 4676777764
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-06 Score=87.74 Aligned_cols=96 Identities=17% Similarity=0.244 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHhhCCCCCCCCCeEEEEcccH-HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHH
Q 010322 226 SVSSAAVELALMKLPESSHATARMLVIGAGK-MGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEML 304 (513)
Q Consensus 226 Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~-mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~ 304 (513)
..+..++++.+... .++.|++|+|||+|. +|+.++..|...|++ |++++|..... . +.
T Consensus 147 cTp~gv~~lL~~~~--i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAt-Vtv~~~~T~~l---~---------------l~ 205 (300)
T 4a26_A 147 CTAKGVIVLLKRCG--IEMAGKRAVVLGRSNIVGAPVAALLMKENAT-VTIVHSGTSTE---D---------------MI 205 (300)
T ss_dssp HHHHHHHHHHHHHT--CCCTTCEEEEECCCTTTHHHHHHHHHHTTCE-EEEECTTSCHH---H---------------HH
T ss_pred CCHHHHHHHHHHcC--CCCCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCCCCCc---h---------------hh
Confidence 34556667766543 578999999999987 799999999999995 99999832211 1 11
Q ss_pred hhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCC
Q 010322 305 SCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRN 353 (513)
Q Consensus 305 ~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrd 353 (513)
+.+..||+||+||+.|.. ++.++++. | .++||++++|.
T Consensus 206 ~~~~~ADIVI~Avg~p~~-I~~~~vk~---------G-avVIDvgi~~~ 243 (300)
T 4a26_A 206 DYLRTADIVIAAMGQPGY-VKGEWIKE---------G-AAVVDVGTTPV 243 (300)
T ss_dssp HHHHTCSEEEECSCCTTC-BCGGGSCT---------T-CEEEECCCEEE
T ss_pred hhhccCCEEEECCCCCCC-CcHHhcCC---------C-cEEEEEeccCC
Confidence 456789999999999875 67777632 2 79999998763
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.1e-06 Score=87.60 Aligned_cols=92 Identities=22% Similarity=0.357 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcccH-HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHh
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGAGK-MGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLS 305 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGaG~-mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~ 305 (513)
.+...+++.+.. + .++.|++|+|||+|. +|+.++..|...|++ |++++++. .++.+
T Consensus 142 Tp~gi~~ll~~~-~-i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAt-Vtv~hs~t--------------------~~L~~ 198 (288)
T 1b0a_A 142 TPRGIVTLLERY-N-IDTFGLNAVVIGASNIVGRPMSMELLLAGCT-TTVTHRFT--------------------KNLRH 198 (288)
T ss_dssp HHHHHHHHHHHT-T-CCCTTCEEEEECCCTTTHHHHHHHHHTTTCE-EEEECSSC--------------------SCHHH
T ss_pred cHHHHHHHHHHc-C-CCCCCCEEEEECCChHHHHHHHHHHHHCCCe-EEEEeCCc--------------------hhHHH
Confidence 344455665543 2 578999999999997 599999999999985 99997542 23455
Q ss_pred hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 306 CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
.+..||+||+|++.|.. ++.++++. | .++||+++|+
T Consensus 199 ~~~~ADIVI~Avg~p~l-I~~~~vk~---------G-avVIDVgi~r 234 (288)
T 1b0a_A 199 HVENADLLIVAVGKPGF-IPGDWIKE---------G-AIVIDVGINR 234 (288)
T ss_dssp HHHHCSEEEECSCCTTC-BCTTTSCT---------T-CEEEECCCEE
T ss_pred HhccCCEEEECCCCcCc-CCHHHcCC---------C-cEEEEccCCc
Confidence 56789999999999985 67777632 2 7999999886
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.2e-06 Score=72.47 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=55.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec---ccchHHhhcCCCcEEEEcCCCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK---PLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~---~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+++|+|+|+|.||+.++..|...|..+|++++|++++.+.+. ..+. ..... ..+++.+.+.++|+||+|++..
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~-~~~~-~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~ 80 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLN-RMGV-ATKQVDAKDEAGLAKALGGFDAVISAAPFF 80 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH-TTTC-EEEECCTTCHHHHHHHTTTCSEEEECSCGG
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-hCCC-cEEEecCCCHHHHHHHHcCCCEEEECCCch
Confidence 4679999999999999999999999557999999999886665 2221 11111 2234566788999999999643
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=4.2e-07 Score=92.52 Aligned_cols=169 Identities=14% Similarity=0.110 Sum_probs=100.2
Q ss_pred hcCCceeeeeee--eccCCCCcccCcchhhchHHHHHHHhHhcCcccchh--hHHHHHHHhhCc-c--ccccccccCCCc
Q 010322 153 LYNKDATQHLFE--VSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNI--SGLFKHAISVGK-R--VRTETNIAAGAV 225 (513)
Q Consensus 153 ~~G~eav~hlf~--V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L--~~lf~~ai~v~k-~--Vr~et~i~~~~~ 225 (513)
..|||+++..+. |+++++.+.+|+..+.. |.+..+. +.-....+.++. . +..+.+....+.
T Consensus 73 v~G~e~~G~~~~GvV~~~v~~~~vGdrV~~~------------g~~aey~~v~~~~~~~~~ip~~~~~~~~~aa~l~~~~ 140 (345)
T 2j3h_A 73 TPGQPIQGYGVSRIIESGHPDYKKGDLLWGI------------VAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPG 140 (345)
T ss_dssp CTTSBCEEEEEEEEEEECSTTCCTTCEEEEE------------EESBSEEEECCCTTTCEEECCCSSCTTGGGTTTSHHH
T ss_pred CCCCeeecceEEEEEecCCCCCCCCCEEEee------------cCceeEEEecccccceeecCCCCCCHHHHHHhccccH
Confidence 479999999999 99999999999988752 1111110 000000112221 1 111111112244
Q ss_pred hHHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc--ch
Q 010322 226 SVSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL--SE 302 (513)
Q Consensus 226 Sva~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~--~~ 302 (513)
+++++++. ... ....|++|+|+|+ |++|.++++.++..|+ +|+++++++++.+.+.+++|.. ..+... ++
T Consensus 141 ~ta~~al~---~~~--~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~~g~~-~~~d~~~~~~ 213 (345)
T 2j3h_A 141 MTAYAGFY---EVC--SPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTKFGFD-DAFNYKEESD 213 (345)
T ss_dssp HHHHHHHH---TTS--CCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTSCCS-EEEETTSCSC
T ss_pred HHHHHHHH---HHh--CCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCc-eEEecCCHHH
Confidence 56666642 111 2347899999998 9999999999999998 6999999998885444467742 222211 12
Q ss_pred HHhhc-----CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 303 MLSCA-----ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 303 ~~~~l-----~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+.+.+ .++|+||+|++.+ .+ ...++.+. ++|+.++++.
T Consensus 214 ~~~~~~~~~~~~~d~vi~~~g~~-~~--~~~~~~l~-----~~G~~v~~G~ 256 (345)
T 2j3h_A 214 LTAALKRCFPNGIDIYFENVGGK-ML--DAVLVNMN-----MHGRIAVCGM 256 (345)
T ss_dssp SHHHHHHHCTTCEEEEEESSCHH-HH--HHHHTTEE-----EEEEEEECCC
T ss_pred HHHHHHHHhCCCCcEEEECCCHH-HH--HHHHHHHh-----cCCEEEEEcc
Confidence 22211 3699999999873 22 33444332 3566666654
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.28 E-value=6.3e-06 Score=86.72 Aligned_cols=94 Identities=19% Similarity=0.208 Sum_probs=72.0
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
..+.|++|+|+|+|.+|+.+++.|+..|+ +|+++++++.++.. +...| +.+. ++.+.+..+|+||.||+..
T Consensus 243 ~~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~~-A~~~G---~~vv---~LeElL~~ADIVv~atgt~- 313 (464)
T 3n58_A 243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICALQ-AAMDG---FEVV---TLDDAASTADIVVTTTGNK- 313 (464)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHH-HHHTT---CEEC---CHHHHGGGCSEEEECCSSS-
T ss_pred CcccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhhH-HHhcC---ceec---cHHHHHhhCCEEEECCCCc-
Confidence 35799999999999999999999999999 59999999877533 33333 2333 3456678999999998764
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEeccCC
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDISVP 351 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDlavP 351 (513)
.+|+.+.+..+. ...++|.++..
T Consensus 314 ~lI~~e~l~~MK-------~GAILINvGRg 336 (464)
T 3n58_A 314 DVITIDHMRKMK-------DMCIVGNIGHF 336 (464)
T ss_dssp SSBCHHHHHHSC-------TTEEEEECSSS
T ss_pred cccCHHHHhcCC-------CCeEEEEcCCC
Confidence 477888887763 23788888743
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1e-05 Score=85.09 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=74.7
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
..+.|++|+|+|.|.||+.+++.|+..|+ +|+++++++.++.. +...|. .+ .++.+.+..+|+||.+++..
T Consensus 207 ~~L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a~~-A~~~G~---~~---~sL~eal~~ADVVilt~gt~- 277 (436)
T 3h9u_A 207 VMIAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINALQ-AAMEGY---QV---LLVEDVVEEAHIFVTTTGND- 277 (436)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHH-HHHTTC---EE---CCHHHHTTTCSEEEECSSCS-
T ss_pred CcccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhhHH-HHHhCC---ee---cCHHHHHhhCCEEEECCCCc-
Confidence 46789999999999999999999999998 59999999877633 334442 22 35677788999999877654
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEeccCCC-CCCc
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDISVPR-NVGS 356 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDlavPr-didp 356 (513)
.+++.+.+..+. ...++|+++-+. .|++
T Consensus 278 ~iI~~e~l~~MK-------~gAIVINvgRg~vEID~ 306 (436)
T 3h9u_A 278 DIITSEHFPRMR-------DDAIVCNIGHFDTEIQV 306 (436)
T ss_dssp CSBCTTTGGGCC-------TTEEEEECSSSGGGBCH
T ss_pred CccCHHHHhhcC-------CCcEEEEeCCCCCccCH
Confidence 566777887753 237899998432 3554
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=98.22 E-value=3.8e-06 Score=83.54 Aligned_cols=93 Identities=19% Similarity=0.375 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHhhCCCCCCCCCeEEEEcccH-HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHH
Q 010322 226 SVSSAAVELALMKLPESSHATARMLVIGAGK-MGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEML 304 (513)
Q Consensus 226 Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~-mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~ 304 (513)
..+..++++.+.. + .++.|++|+|||.|. +|+.++..|...|++ |+++++.. .++.
T Consensus 143 cTp~gv~~lL~~~-~-i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAt-Vtv~hs~T--------------------~~L~ 199 (286)
T 4a5o_A 143 CTPKGIMTLLAST-G-ADLYGMDAVVVGASNIVGRPMALELLLGGCT-VTVTHRFT--------------------RDLA 199 (286)
T ss_dssp HHHHHHHHHHHHT-T-CCCTTCEEEEECTTSTTHHHHHHHHHHTTCE-EEEECTTC--------------------SCHH
T ss_pred CCHHHHHHHHHHh-C-CCCCCCEEEEECCCchhHHHHHHHHHHCCCe-EEEEeCCC--------------------cCHH
Confidence 3445556666543 2 578999999999976 899999999999995 99987631 1344
Q ss_pred hhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 305 SCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 305 ~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
+.+..||+||+|++.|.. ++.++++. | .++||+++++
T Consensus 200 ~~~~~ADIVI~Avg~p~~-I~~~~vk~---------G-avVIDvgi~~ 236 (286)
T 4a5o_A 200 DHVSRADLVVVAAGKPGL-VKGEWIKE---------G-AIVIDVGINR 236 (286)
T ss_dssp HHHHTCSEEEECCCCTTC-BCGGGSCT---------T-CEEEECCSCS
T ss_pred HHhccCCEEEECCCCCCC-CCHHHcCC---------C-eEEEEecccc
Confidence 556789999999999876 67777632 2 7899999876
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=2.5e-06 Score=85.88 Aligned_cols=70 Identities=19% Similarity=0.294 Sum_probs=58.8
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPL 323 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~v 323 (513)
++|.+||.|.||..++++|...|. +|+++||++++++.+.+. |. . ..++..+....+|+||.|.+.+..+
T Consensus 4 ~kIgfIGlG~MG~~mA~~L~~~G~-~v~v~dr~~~~~~~l~~~-Ga---~--~a~s~~e~~~~~dvv~~~l~~~~~v 73 (300)
T 3obb_A 4 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAA-GA---S--AARSARDAVQGADVVISMLPASQHV 73 (300)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHT-TC---E--ECSSHHHHHTTCSEEEECCSCHHHH
T ss_pred CEEEEeeehHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHc-CC---E--EcCCHHHHHhcCCceeecCCchHHH
Confidence 689999999999999999999998 599999999999888764 42 2 2356677788999999999987653
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.2e-06 Score=88.66 Aligned_cols=168 Identities=13% Similarity=0.124 Sum_probs=99.4
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCcc--------ccccccccCCC
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKR--------VRTETNIAAGA 224 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~--------Vr~et~i~~~~ 224 (513)
..|||+++.+.++ |.+.+.+|+..+.... ..|...++.|++++.++.. +..+......+
T Consensus 63 v~G~E~~G~V~~~--~v~~~~vGdrV~~~~~-----------~~g~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~ 129 (328)
T 1xa0_A 63 VPGIDLAGVVVSS--QHPRFREGDEVIATGY-----------EIGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGT 129 (328)
T ss_dssp CCCSEEEEEEEEC--CSSSCCTTCEEEEEST-----------TBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHH
T ss_pred ccCcceEEEEEec--CCCCCCCCCEEEEccc-----------cCCCCCCccceeEEEechHHeEECCCCCCHHHhhhhhh
Confidence 5799999999984 7788999999876421 1222234566666555442 22111111110
Q ss_pred -chHHHHHHHHHHhhCCCCCCCCC-eEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc
Q 010322 225 -VSVSSAAVELALMKLPESSHATA-RMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS 301 (513)
Q Consensus 225 -~Sva~~Av~la~~~~~~~~l~g~-~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~ 301 (513)
...++.++..... . +..+|+ +|+|+|+ |++|.++++.++..|++ |+++++++++. ++++++|.. ..+ +..
T Consensus 130 ~~~ta~~~l~~~~~-~--~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~-vi~~~~~~~~~-~~~~~lGa~-~~i-~~~ 202 (328)
T 1xa0_A 130 AGFTAALSIHRLEE-H--GLTPERGPVLVTGATGGVGSLAVSMLAKRGYT-VEASTGKAAEH-DYLRVLGAK-EVL-ARE 202 (328)
T ss_dssp HHHHHHHHHHHHHH-T--TCCGGGCCEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCTTCH-HHHHHTTCS-EEE-ECC
T ss_pred hHHHHHHHHHHHhh-c--CCCCCCceEEEecCCCHHHHHHHHHHHHCCCE-EEEEECCHHHH-HHHHHcCCc-EEE-ecC
Confidence 0112333221111 1 123454 8999998 99999999999999995 88999998887 566778753 222 222
Q ss_pred hH-H---hhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 302 EM-L---SCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 302 ~~-~---~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+. . ..+ .++|+||+|++.+ .+ ...++.+. ++|+.++++.
T Consensus 203 ~~~~~~~~~~~~~~~d~vid~~g~~-~~--~~~~~~l~-----~~G~~v~~G~ 247 (328)
T 1xa0_A 203 DVMAERIRPLDKQRWAAAVDPVGGR-TL--ATVLSRMR-----YGGAVAVSGL 247 (328)
T ss_dssp ---------CCSCCEEEEEECSTTT-TH--HHHHHTEE-----EEEEEEECSC
T ss_pred CcHHHHHHHhcCCcccEEEECCcHH-HH--HHHHHhhc-----cCCEEEEEee
Confidence 21 1 112 3689999999974 22 34454432 3566666654
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1e-06 Score=89.21 Aligned_cols=168 Identities=14% Similarity=0.161 Sum_probs=100.2
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCcc--------ccccccccCCC
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKR--------VRTETNIAAGA 224 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~--------Vr~et~i~~~~ 224 (513)
..|||+++.+.++ |.+.+.+|+..+.... ..|...++.|++++.++.. +..+......+
T Consensus 64 i~G~E~~G~V~~~--~v~~~~vGdrV~~~~~-----------~~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~ 130 (330)
T 1tt7_A 64 ILGIDAAGTVVSS--NDPRFAEGDEVIATSY-----------ELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGT 130 (330)
T ss_dssp ECCSEEEEEEEEC--SSTTCCTTCEEEEEST-----------TBTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHHHH
T ss_pred cccceEEEEEEEc--CCCCCCCCCEEEEccc-----------ccCCCCCccceeEEEecHHHeEECCCCCCHHHHhhccc
Confidence 5799999999995 6788999999876421 1222334666666655542 11111111110
Q ss_pred -chHHHHHHHHHHhhCCCCCCCCC-eEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc
Q 010322 225 -VSVSSAAVELALMKLPESSHATA-RMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS 301 (513)
Q Consensus 225 -~Sva~~Av~la~~~~~~~~l~g~-~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~ 301 (513)
...++.++..... . +..+|+ +|+|+|+ |++|.++++.++..|++ |+++++++++. ++++++|.. .+.+..
T Consensus 131 ~~~ta~~~l~~~~~-~--~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~-vi~~~~~~~~~-~~~~~lGa~--~v~~~~ 203 (330)
T 1tt7_A 131 AGFTAALSVHRLEQ-N--GLSPEKGSVLVTGATGGVGGIAVSMLNKRGYD-VVASTGNREAA-DYLKQLGAS--EVISRE 203 (330)
T ss_dssp HHHHHHHHHHHHHH-T--TCCGGGCCEEEESTTSHHHHHHHHHHHHHTCC-EEEEESSSSTH-HHHHHHTCS--EEEEHH
T ss_pred hHHHHHHHHHHHHh-c--CcCCCCceEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHH-HHHHHcCCc--EEEECC
Confidence 0112333221111 1 123464 8999998 99999999999999995 88999988887 566778753 222222
Q ss_pred hH-Hh---hc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 302 EM-LS---CA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 302 ~~-~~---~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+. .+ .+ .++|+||+|++.+ .+ ...++.+. ++|+.++++.
T Consensus 204 ~~~~~~~~~~~~~~~d~vid~~g~~-~~--~~~~~~l~-----~~G~iv~~G~ 248 (330)
T 1tt7_A 204 DVYDGTLKALSKQQWQGAVDPVGGK-QL--ASLLSKIQ-----YGGSVAVSGL 248 (330)
T ss_dssp HHCSSCCCSSCCCCEEEEEESCCTH-HH--HHHHTTEE-----EEEEEEECCC
T ss_pred CchHHHHHHhhcCCccEEEECCcHH-HH--HHHHHhhc-----CCCEEEEEec
Confidence 21 11 11 3689999999974 22 34444432 3566666654
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=2.8e-06 Score=85.99 Aligned_cols=166 Identities=14% Similarity=0.096 Sum_probs=98.2
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCcc----ccccc--cccCCCch
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKR----VRTET--NIAAGAVS 226 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~----Vr~et--~i~~~~~S 226 (513)
..|||+++.+.+ +|++.+-+|+..+.. |.+..+.----...+.+|+. +..+. .....+.+
T Consensus 66 ~~g~e~~G~Vv~--~~v~~~~vGdrV~~~------------g~~aey~~v~~~~~~~iP~~~~~~~~~~~a~a~l~~~~~ 131 (333)
T 1v3u_A 66 VMMGQQVARVVE--SKNSAFPAGSIVLAQ------------SGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGL 131 (333)
T ss_dssp BCCCCEEEEEEE--ESCTTSCTTCEEEEC------------CCSBSEEEESSTTEEECC--CCTTSCGGGGGTTTSHHHH
T ss_pred ccccceEEEEEe--cCCCCCCCCCEEEec------------CceEEEEEechHHeEEcCcccccCCCHHHHHHHhCChHH
Confidence 369999999887 478889999988752 22111110000011223332 22221 12223455
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc--chH
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL--SEM 303 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~--~~~ 303 (513)
++++++.. .. ....|++|+|+|+ |++|.++++.++..|+ +|++++++.++.+. ++++|.. ..+... ++.
T Consensus 132 ta~~al~~---~~--~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~-~~~~g~~-~~~d~~~~~~~ 203 (333)
T 1v3u_A 132 TAYFGLLE---VC--GVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAY-LKQIGFD-AAFNYKTVNSL 203 (333)
T ss_dssp HHHHHHHT---TS--CCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHH-HHHTTCS-EEEETTSCSCH
T ss_pred HHHHHHHH---hh--CCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHH-HHhcCCc-EEEecCCHHHH
Confidence 66666521 11 2347899999998 9999999999999999 69999999988854 4777642 222211 222
Q ss_pred Hhhc-----CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 304 LSCA-----ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 304 ~~~l-----~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.+.+ .++|+||++++.+. + ...++.+. ++|+.++++.
T Consensus 204 ~~~~~~~~~~~~d~vi~~~g~~~-~--~~~~~~l~-----~~G~~v~~g~ 245 (333)
T 1v3u_A 204 EEALKKASPDGYDCYFDNVGGEF-L--NTVLSQMK-----DFGKIAICGA 245 (333)
T ss_dssp HHHHHHHCTTCEEEEEESSCHHH-H--HHHHTTEE-----EEEEEEECCC
T ss_pred HHHHHHHhCCCCeEEEECCChHH-H--HHHHHHHh-----cCCEEEEEec
Confidence 2221 36899999998742 1 33444332 3566666654
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=9.3e-06 Score=87.07 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=70.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.+.|++|+|+|+|.||..+++.|+..|+ +|+++++++.++ ..+.++|. .+. ++.+.+.++|+||+||+.+.
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~-~~A~~~Ga---~~~---~l~e~l~~aDvVi~atgt~~- 341 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINA-LQAMMEGF---DVV---TVEEAIGDADIVVTATGNKD- 341 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHH-HHHHHTTC---EEC---CHHHHGGGCSEEEECSSSSC-
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHcCC---EEe---cHHHHHhCCCEEEECCCCHH-
Confidence 4689999999999999999999999998 699999999887 44556663 233 33455779999999998776
Q ss_pred CCChhhhhcCCchhhhcCCcEEEEeccCC
Q 010322 323 LFLKDHVQDLPPVEAAVGGLRLFIDISVP 351 (513)
Q Consensus 323 vi~~~~l~~~~~~~~~~~g~~viiDlavP 351 (513)
+++.+.++.+. ++ .++++++..
T Consensus 342 ~i~~~~l~~mk-----~g--gilvnvG~~ 363 (494)
T 3ce6_A 342 IIMLEHIKAMK-----DH--AILGNIGHF 363 (494)
T ss_dssp SBCHHHHHHSC-----TT--CEEEECSSS
T ss_pred HHHHHHHHhcC-----CC--cEEEEeCCC
Confidence 44556666653 23 466777644
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.2e-06 Score=90.86 Aligned_cols=121 Identities=21% Similarity=0.264 Sum_probs=85.6
Q ss_pred CCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH----HH---HH----HHHHHhC
Q 010322 223 GAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE----ER---VA----AICEELN 291 (513)
Q Consensus 223 ~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~----~r---a~----~la~~~g 291 (513)
++.+|..+++-.+.+..+ ..+...+|+|+|+|..|..+++.+...|+++|+++|++- +| .. .++....
T Consensus 166 GTa~V~lAall~al~l~g-~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~ 244 (398)
T 2a9f_A 166 GTAIVVLAAIFNSLKLLK-KSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTN 244 (398)
T ss_dssp HHHHHHHHHHHHHHHTTT-CCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHS
T ss_pred hHHHHHHHHHHHHHHHhC-CCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccC
Confidence 455666666544544433 578899999999999999999999999998999999862 22 22 2333211
Q ss_pred CcceeecccchHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC-CCCcc
Q 010322 292 GVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR-NVGSC 357 (513)
Q Consensus 292 ~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr-didp~ 357 (513)
......++.+++.++|++|-+++ | .+|++++++.+. ...+++++|.|. .+.|+
T Consensus 245 ----~~~~~~~L~eav~~ADV~IG~Sa-p-gl~T~EmVk~Ma-------~~pIIfalsNPt~E~~pe 298 (398)
T 2a9f_A 245 ----REFKSGTLEDALEGADIFIGVSA-P-GVLKAEWISKMA-------ARPVIFAMANPIPEIYPD 298 (398)
T ss_dssp ----CTTCCCSCSHHHHTTCSEEECCS-T-TCCCHHHHHTSC-------SSCEEEECCSSSCSSCHH
T ss_pred ----cccchhhHHHHhccCCEEEecCC-C-CCCCHHHHHhhC-------CCCEEEECCCCCccCCHH
Confidence 01112346677889999999965 4 578999998874 348999999984 45553
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=98.11 E-value=5.9e-06 Score=85.00 Aligned_cols=94 Identities=18% Similarity=0.306 Sum_probs=70.0
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC-
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE- 320 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~- 320 (513)
..+.|++|+|||.|.||+.+++.|...|++ |+++||++... +.+...|. . ..+++.+.+..+|+|+.+++..
T Consensus 160 ~~l~gktvGIIG~G~IG~~vA~~l~~~G~~-V~~~dr~~~~~-~~~~~~g~---~--~~~~l~ell~~aDvV~l~~Plt~ 232 (351)
T 3jtm_A 160 YDLEGKTIGTVGAGRIGKLLLQRLKPFGCN-LLYHDRLQMAP-ELEKETGA---K--FVEDLNEMLPKCDVIVINMPLTE 232 (351)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHGGGCCE-EEEECSSCCCH-HHHHHHCC---E--ECSCHHHHGGGCSEEEECSCCCT
T ss_pred ccccCCEEeEEEeCHHHHHHHHHHHHCCCE-EEEeCCCccCH-HHHHhCCC---e--EcCCHHHHHhcCCEEEECCCCCH
Confidence 367899999999999999999999999995 99999986444 33444442 2 2346777788999999998853
Q ss_pred --ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 --APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 --~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+. ...++|+++
T Consensus 233 ~t~~li~~~~l~~mk-------~gailIN~a 256 (351)
T 3jtm_A 233 KTRGMFNKELIGKLK-------KGVLIVNNA 256 (351)
T ss_dssp TTTTCBSHHHHHHSC-------TTEEEEECS
T ss_pred HHHHhhcHHHHhcCC-------CCCEEEECc
Confidence 4467777776653 226667665
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.1e-06 Score=82.38 Aligned_cols=98 Identities=18% Similarity=0.305 Sum_probs=66.6
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHH--------------HHHHHHHhCCcceeecccchHHhhc
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEER--------------VAAICEELNGVEIIYKPLSEMLSCA 307 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~r--------------a~~la~~~g~~~~~~~~~~~~~~~l 307 (513)
..+.+++|.|||+|.||..++..|...|. +|+++||++++ ...++..++.. ...+..+.+
T Consensus 15 ~~~~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~e~~ 88 (245)
T 3dtt_A 15 LYFQGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHV-----HLAAFADVA 88 (245)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHTCC-------CCHHHHGGGSTTC-----EEEEHHHHH
T ss_pred cccCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCce-----eccCHHHHH
Confidence 35678999999999999999999999997 59999999987 44555444421 224455667
Q ss_pred CCCcEEEEcCCCCccCCChhhhhcC-CchhhhcCCcEEEEeccCCC
Q 010322 308 ADADVVFTSTASEAPLFLKDHVQDL-PPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 308 ~~aDVVI~AT~s~~~vi~~~~l~~~-~~~~~~~~g~~viiDlavPr 352 (513)
.++|+||.|++..... +.+..+ .+. . ...++||++.|-
T Consensus 89 ~~aDvVilavp~~~~~---~~~~~i~~~~---l-~g~ivi~~s~~~ 127 (245)
T 3dtt_A 89 AGAELVVNATEGASSI---AALTAAGAEN---L-AGKILVDIANPL 127 (245)
T ss_dssp HHCSEEEECSCGGGHH---HHHHHHCHHH---H-TTSEEEECCCCE
T ss_pred hcCCEEEEccCcHHHH---HHHHHhhhhh---c-CCCEEEECCCCC
Confidence 7899999999986532 222221 110 1 225889998653
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=98.09 E-value=1.6e-06 Score=86.69 Aligned_cols=107 Identities=18% Similarity=0.237 Sum_probs=71.1
Q ss_pred CchHHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc--
Q 010322 224 AVSVSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL-- 300 (513)
Q Consensus 224 ~~Sva~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~-- 300 (513)
+.+++++++... ...+|++|+|+|+ |++|.++++.++..|+ +|+++++++++. ++++++|.. ..+...
T Consensus 110 ~~~ta~~~l~~~------~~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~-~~~~~~ga~-~~~~~~~~ 180 (302)
T 1iz0_A 110 SFLTAYLALKRA------QARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKL-ALPLALGAE-EAATYAEV 180 (302)
T ss_dssp HHHHHHHHHHHT------TCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGS-HHHHHTTCS-EEEEGGGH
T ss_pred HHHHHHHHHHHh------cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHhcCCC-EEEECCcc
Confidence 556667665421 1136899999998 9999999999999999 699999998887 556677753 222221
Q ss_pred chHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 301 SEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 301 ~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
++..+.+.++|+||+ ++.+ .+ ...++.+. ++|+.+.++.
T Consensus 181 ~~~~~~~~~~d~vid-~g~~-~~--~~~~~~l~-----~~G~~v~~g~ 219 (302)
T 1iz0_A 181 PERAKAWGGLDLVLE-VRGK-EV--EESLGLLA-----HGGRLVYIGA 219 (302)
T ss_dssp HHHHHHTTSEEEEEE-CSCT-TH--HHHHTTEE-----EEEEEEEC--
T ss_pred hhHHHHhcCceEEEE-CCHH-HH--HHHHHhhc-----cCCEEEEEeC
Confidence 234444578999999 8873 22 34444332 3565555543
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=2.3e-06 Score=86.20 Aligned_cols=168 Identities=15% Similarity=0.126 Sum_probs=102.6
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCcc--------ccccccccCC
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKR--------VRTETNIAAG 223 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~--------Vr~et~i~~~ 223 (513)
...|||+++.+.+++ .+.+.+|+..+.... ..|...++.|++++.++.. +..+......
T Consensus 59 ~v~G~E~~G~V~~~G--v~~~~vGdrV~~~~~-----------~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~ 125 (324)
T 3nx4_A 59 MIPGIDFAGTVHASE--DPRFHAGQEVLLTGW-----------GVGENHWGGLAERARVKGDWLVALPAGLSSRNAMIIG 125 (324)
T ss_dssp BCCCSEEEEEEEEES--STTCCTTCEEEEECT-----------TBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHH
T ss_pred ccccceeEEEEEEeC--CCCCCCCCEEEEccc-----------ccCCCCCCceeeEEecCHHHcEECCCCCCHHHHHHhh
Confidence 357999999999975 688999999886421 1233345666666655542 2222211111
Q ss_pred -CchHHHHHHHHHHhhCCCCCCC--CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecc
Q 010322 224 -AVSVSSAAVELALMKLPESSHA--TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKP 299 (513)
Q Consensus 224 -~~Sva~~Av~la~~~~~~~~l~--g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~ 299 (513)
+...++.++..... . +... |+ |+|+|+ |++|.++++.++..|+ +|+++++++++. ++++++|.. .+.+
T Consensus 126 ~~~~ta~~al~~~~~-~--~~~~~~g~-VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~-~~~~~lGa~--~vi~ 197 (324)
T 3nx4_A 126 TAGFTAMLCVMALED-A--GIRPQDGE-VVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTH-GYLKSLGAN--RILS 197 (324)
T ss_dssp HHHHHHHHHHHHHHH-T--TCCGGGCC-EEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGH-HHHHHHTCS--EEEE
T ss_pred hHHHHHHHHHHHhhh-c--ccCCCCCe-EEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHhcCCC--EEEe
Confidence 11223444332222 1 1112 45 999998 9999999999999999 599999999887 667788853 2222
Q ss_pred cchHHh--hc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 300 LSEMLS--CA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 300 ~~~~~~--~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
..+... .+ .++|+||+|++.+ .+ ...++.+. ++|+.+.+..
T Consensus 198 ~~~~~~~~~~~~~~~d~v~d~~g~~-~~--~~~~~~l~-----~~G~iv~~G~ 242 (324)
T 3nx4_A 198 RDEFAESRPLEKQLWAGAIDTVGDK-VL--AKVLAQMN-----YGGCVAACGL 242 (324)
T ss_dssp GGGSSCCCSSCCCCEEEEEESSCHH-HH--HHHHHTEE-----EEEEEEECCC
T ss_pred cCCHHHHHhhcCCCccEEEECCCcH-HH--HHHHHHHh-----cCCEEEEEec
Confidence 222111 11 3689999999875 22 34444432 3566666654
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.1e-05 Score=83.36 Aligned_cols=95 Identities=17% Similarity=0.208 Sum_probs=70.3
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
..+.|++|+|||.|.||+.+++.|...|+++|++++|++.+. +.+..+|. .. ..++.+.+..+|+|+.+++...
T Consensus 160 ~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~-~~~~~~g~---~~--~~~l~ell~~aDvV~l~~P~t~ 233 (364)
T 2j6i_A 160 YDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPK-DAEEKVGA---RR--VENIEELVAQADIVTVNAPLHA 233 (364)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCH-HHHHHTTE---EE--CSSHHHHHHTCSEEEECCCCST
T ss_pred ccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccch-hHHHhcCc---Ee--cCCHHHHHhcCCEEEECCCCCh
Confidence 367899999999999999999999999985599999987554 33445542 22 2356667789999999998753
Q ss_pred ---cCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 322 ---PLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 322 ---~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
.+++.+.+..+. ...++|+++
T Consensus 234 ~t~~li~~~~l~~mk-------~ga~lIn~a 257 (364)
T 2j6i_A 234 GTKGLINKELLSKFK-------KGAWLVNTA 257 (364)
T ss_dssp TTTTCBCHHHHTTSC-------TTEEEEECS
T ss_pred HHHHHhCHHHHhhCC-------CCCEEEECC
Confidence 466666665542 237888876
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.03 E-value=8.3e-06 Score=81.73 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=57.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.++|.|||+|.||..++..|...|. +|+++||++++++.+.+. |.. . ...+..+.+.++|+||.|++.+..
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~-g~~--~--~~~~~~e~~~~aDvvi~~vp~~~~ 77 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAE-GAC--G--AAASAREFAGVVDALVILVVNAAQ 77 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT-TCS--E--EESSSTTTTTTCSEEEECCSSHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHc-CCc--c--ccCCHHHHHhcCCEEEEECCCHHH
Confidence 4689999999999999999999998 599999999998777654 321 1 134555667899999999998643
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1e-05 Score=82.58 Aligned_cols=92 Identities=15% Similarity=0.280 Sum_probs=67.5
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
..+.|++|+|||+|.||+.+++.|...|. +|++++|+.++ +.+..+|. .. .++.+.+.++|+||.|++.+.
T Consensus 146 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~--~~~~~~g~---~~---~~l~~~l~~aDvVil~vp~~~ 216 (334)
T 2dbq_A 146 YDVYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKE--EVERELNA---EF---KPLEDLLRESDFVVLAVPLTR 216 (334)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH--HHHHHHCC---EE---CCHHHHHHHCSEEEECCCCCT
T ss_pred cCCCCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCcch--hhHhhcCc---cc---CCHHHHHhhCCEEEECCCCCh
Confidence 35789999999999999999999999998 59999999766 33444542 22 345566778999999998865
Q ss_pred ---cCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 322 ---PLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 322 ---~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
.+++.+.+..+. ...++|+++
T Consensus 217 ~t~~~i~~~~~~~mk-------~~ailIn~s 240 (334)
T 2dbq_A 217 ETYHLINEERLKLMK-------KTAILINIA 240 (334)
T ss_dssp TTTTCBCHHHHHHSC-------TTCEEEECS
T ss_pred HHHHhhCHHHHhcCC-------CCcEEEECC
Confidence 455544444432 225778876
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.1e-05 Score=79.07 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=59.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
+.+.+|.|||+|.||..++..|...|...|++++|++++++.+++.++. . ...+..+.+.++|+||.|++..
T Consensus 8 ~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~---~--~~~~~~~~~~~~Dvvi~av~~~ 79 (266)
T 3d1l_A 8 IEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEA---E--YTTDLAEVNPYAKLYIVSLKDS 79 (266)
T ss_dssp GGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTC---E--EESCGGGSCSCCSEEEECCCHH
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCC---c--eeCCHHHHhcCCCEEEEecCHH
Confidence 3467899999999999999999999986589999999999888877653 2 2345556678999999999876
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=7.5e-06 Score=83.54 Aligned_cols=92 Identities=12% Similarity=0.078 Sum_probs=68.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+.|++|+|||.|.||+.+++.|+..|+ +|+++||++.+. +.+..+|. .. .++.+.+..+|+|+.+++..
T Consensus 142 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~---~~---~~l~ell~~aDvV~l~~P~t~~ 213 (330)
T 4e5n_A 142 GLDNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKALDT-QTEQRLGL---RQ---VACSELFASSDFILLALPLNAD 213 (330)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHTTTSCC-EEEEECSSCCCH-HHHHHHTE---EE---CCHHHHHHHCSEEEECCCCSTT
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCCCcH-hHHHhcCc---ee---CCHHHHHhhCCEEEEcCCCCHH
Confidence 5789999999999999999999999998 499999986443 33444442 22 24566677899999998853
Q ss_pred -ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 -APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 -~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+. ...++||++
T Consensus 214 t~~li~~~~l~~mk-------~gailIN~a 236 (330)
T 4e5n_A 214 TLHLVNAELLALVR-------PGALLVNPC 236 (330)
T ss_dssp TTTCBCHHHHTTSC-------TTEEEEECS
T ss_pred HHHHhCHHHHhhCC-------CCcEEEECC
Confidence 4467766666553 237888876
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.99 E-value=9.4e-06 Score=77.64 Aligned_cols=93 Identities=19% Similarity=0.324 Sum_probs=66.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEE-EeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccCC
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVV-VNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLF 324 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v-~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi 324 (513)
..+|.|||+|.||..++..|...|.. |++ ++|++++++.+++.++.. .. .+..+.+.++|+||.|++... +
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~-V~~v~~r~~~~~~~l~~~~g~~-~~----~~~~~~~~~aDvVilavp~~~-~- 94 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIP-AIIANSRGPASLSSVTDRFGAS-VK----AVELKDALQADVVILAVPYDS-I- 94 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCC-EEEECTTCGGGGHHHHHHHTTT-EE----ECCHHHHTTSSEEEEESCGGG-H-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCE-EEEEECCCHHHHHHHHHHhCCC-cc----cChHHHHhcCCEEEEeCChHH-H-
Confidence 46899999999999999999999985 777 999999998988887642 11 122334678999999997432 1
Q ss_pred ChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 325 LKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 325 ~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
.+.+..+.+ ....+++|++.|-
T Consensus 95 -~~v~~~l~~-----~~~~ivi~~~~g~ 116 (220)
T 4huj_A 95 -ADIVTQVSD-----WGGQIVVDASNAI 116 (220)
T ss_dssp -HHHHTTCSC-----CTTCEEEECCCCB
T ss_pred -HHHHHHhhc-----cCCCEEEEcCCCC
Confidence 334443322 1125888987543
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=2.4e-05 Score=83.72 Aligned_cols=93 Identities=19% Similarity=0.149 Sum_probs=71.2
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
..+.|++|+|||.|.||+.+++.|+..|+ +|++++|++.+... +...|. .+ .++.+.+..+|+||.+|+. .
T Consensus 273 ~~L~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~~~~~~-a~~~G~---~~---~~l~ell~~aDiVi~~~~t-~ 343 (494)
T 3d64_A 273 VMIAGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDPICALQ-AAMEGY---RV---VTMEYAADKADIFVTATGN-Y 343 (494)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCHHHHHH-HHTTTC---EE---CCHHHHTTTCSEEEECSSS-S
T ss_pred cccCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCChHhHHH-HHHcCC---Ee---CCHHHHHhcCCEEEECCCc-c
Confidence 35789999999999999999999999998 59999999876522 222332 22 3566778899999999943 4
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEeccC
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDISV 350 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDlav 350 (513)
.+|+.+.+..+. ...++||++-
T Consensus 344 ~lI~~~~l~~MK-------~gAilINvgr 365 (494)
T 3d64_A 344 HVINHDHMKAMR-------HNAIVCNIGH 365 (494)
T ss_dssp CSBCHHHHHHCC-------TTEEEEECSS
T ss_pred cccCHHHHhhCC-------CCcEEEEcCC
Confidence 567878877653 2378999874
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.99 E-value=6e-06 Score=83.18 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=57.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
...++|.|||+|.||..++..|...|. +|+++||++++++.+.+ .|. . ...+..+.+..+|+||.|++.+..
T Consensus 19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~-~g~---~--~~~~~~~~~~~aDvvi~~vp~~~~ 90 (310)
T 3doj_A 19 SHMMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELVE-HGA---S--VCESPAEVIKKCKYTIAMLSDPCA 90 (310)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHH-TTC---E--ECSSHHHHHHHCSEEEECCSSHHH
T ss_pred ccCCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH-CCC---e--EcCCHHHHHHhCCEEEEEcCCHHH
Confidence 345789999999999999999999998 59999999999877764 332 2 234556667789999999988643
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.99 E-value=5.1e-06 Score=84.10 Aligned_cols=71 Identities=24% Similarity=0.353 Sum_probs=58.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
..++|.|||+|.||..++..|...|. +|+++||++++++.+++. |. . ...+..+.+.++|+||.|++.+..
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~l~~~-g~---~--~~~~~~e~~~~aDvVi~~vp~~~~ 100 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTPARAASLAAL-GA---T--IHEQARAAARDADIVVSMLENGAV 100 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTT-TC---E--EESSHHHHHTTCSEEEECCSSHHH
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHC-CC---E--eeCCHHHHHhcCCEEEEECCCHHH
Confidence 46799999999999999999999998 599999999998777654 32 2 235666777899999999997644
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.98 E-value=2e-05 Score=80.48 Aligned_cols=92 Identities=10% Similarity=0.074 Sum_probs=69.2
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
..+.|++|+|||.|.||+.+++.|+..|. +|+++||+..+. .+..+|. .. .++.+.+..+|+|+.+++...
T Consensus 161 ~~l~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~~~~~g~---~~---~~l~ell~~aDvV~l~~P~t~ 231 (335)
T 2g76_A 161 TELNGKTLGILGLGRIGREVATRMQSFGM-KTIGYDPIISPE--VSASFGV---QQ---LPLEEIWPLCDFITVHTPLLP 231 (335)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSCHH--HHHHTTC---EE---CCHHHHGGGCSEEEECCCCCT
T ss_pred cCCCcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcchh--hhhhcCc---ee---CCHHHHHhcCCEEEEecCCCH
Confidence 35789999999999999999999999998 599999986552 3445552 22 256667789999999988753
Q ss_pred ---cCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 322 ---PLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 322 ---~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
.+++.+.+..+. ...++||++
T Consensus 232 ~t~~li~~~~l~~mk-------~gailIN~a 255 (335)
T 2g76_A 232 STTGLLNDNTFAQCK-------KGVRVVNCA 255 (335)
T ss_dssp TTTTSBCHHHHTTSC-------TTEEEEECS
T ss_pred HHHHhhCHHHHhhCC-------CCcEEEECC
Confidence 456666665542 237888886
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=97.98 E-value=1e-05 Score=78.53 Aligned_cols=68 Identities=18% Similarity=0.301 Sum_probs=56.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC---CeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGC---TKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~---~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
++|.|||+|.||..++..|...|. .+|+++||++++++.++++++. . ...+..+.+.++|+||.|++.
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~---~--~~~~~~e~~~~aDvVilav~~ 73 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGL---T--TTTDNNEVAKNADILILSIKP 73 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCC---E--ECSCHHHHHHHCSEEEECSCT
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCC---E--EeCChHHHHHhCCEEEEEeCH
Confidence 579999999999999999999987 3599999999999888877763 2 234455566789999999954
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.97 E-value=4.1e-06 Score=83.18 Aligned_cols=69 Identities=26% Similarity=0.387 Sum_probs=55.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
++|.|||+|.||..++..|...|. +|+++||++++++.+.+. +. . ...+..+.+.++|+||.|++.+..
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~-g~---~--~~~~~~~~~~~aDvvi~~vp~~~~ 70 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSPEKAEELAAL-GA---E--RAATPCEVVESCPVTFAMLADPAA 70 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHT-TC---E--ECSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHC-CC---e--ecCCHHHHHhcCCEEEEEcCCHHH
Confidence 589999999999999999999997 599999999998777653 32 2 234566667789999999997543
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.4e-05 Score=80.80 Aligned_cols=91 Identities=19% Similarity=0.278 Sum_probs=66.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc-
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA- 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~- 321 (513)
.+.|++|+|||.|.||+.+++.|+..|+ +|++++|++.+ ..+.++|. ... ++.+.+..+|+|+.+++...
T Consensus 139 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~--~~~~~~g~---~~~---~l~ell~~aDvV~l~~p~~~~ 209 (307)
T 1wwk_A 139 ELEGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNE--ERAKEVNG---KFV---DLETLLKESDVVTIHVPLVES 209 (307)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH--HHHHHTTC---EEC---CHHHHHHHCSEEEECCCCSTT
T ss_pred ccCCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCCh--hhHhhcCc---ccc---CHHHHHhhCCEEEEecCCChH
Confidence 5789999999999999999999999998 59999998765 23445542 222 45566778999999998643
Q ss_pred --cCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 322 --PLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 322 --~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
.+++.+.+..+. ...++||++
T Consensus 210 t~~li~~~~l~~mk-------~ga~lin~a 232 (307)
T 1wwk_A 210 TYHLINEERLKLMK-------KTAILINTS 232 (307)
T ss_dssp TTTCBCHHHHHHSC-------TTCEEEECS
T ss_pred HhhhcCHHHHhcCC-------CCeEEEECC
Confidence 456555555442 125667764
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=7.4e-05 Score=79.65 Aligned_cols=93 Identities=17% Similarity=0.203 Sum_probs=70.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.+.|++|+|+|+|+||+.+++.|+..|+ +|+++++++.++...+. .+. .+ .++.+.+..+|+|+++++...
T Consensus 262 ~L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~-~g~---dv---~~lee~~~~aDvVi~atG~~~- 332 (488)
T 3ond_A 262 MIAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDPICALQATM-EGL---QV---LTLEDVVSEADIFVTTTGNKD- 332 (488)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH-TTC---EE---CCGGGTTTTCSEEEECSSCSC-
T ss_pred cccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH-hCC---cc---CCHHHHHHhcCEEEeCCCChh-
Confidence 5789999999999999999999999999 69999999988754443 332 22 234556778999999998765
Q ss_pred CCChhhhhcCCchhhhcCCcEEEEeccCC
Q 010322 323 LFLKDHVQDLPPVEAAVGGLRLFIDISVP 351 (513)
Q Consensus 323 vi~~~~l~~~~~~~~~~~g~~viiDlavP 351 (513)
++..+.+..+. ...++++++.+
T Consensus 333 vl~~e~l~~mk-------~gaiVvNaG~~ 354 (488)
T 3ond_A 333 IIMLDHMKKMK-------NNAIVCNIGHF 354 (488)
T ss_dssp SBCHHHHTTSC-------TTEEEEESSST
T ss_pred hhhHHHHHhcC-------CCeEEEEcCCC
Confidence 45566676543 23678888765
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.1e-05 Score=82.40 Aligned_cols=90 Identities=20% Similarity=0.369 Sum_probs=66.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+.|++|+|||+|.||+.+++.|...|. +|++++|++++ +.+..++. .. .++.+.+..+|+|+.|++..
T Consensus 143 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~~~~~--~~~~~~g~---~~---~~l~e~l~~aDiVil~vp~~~~ 213 (333)
T 2d0i_A 143 SLYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRKV--NVEKELKA---RY---MDIDELLEKSDIVILALPLTRD 213 (333)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCH--HHHHHHTE---EE---CCHHHHHHHCSEEEECCCCCTT
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcch--hhhhhcCc---ee---cCHHHHHhhCCEEEEcCCCChH
Confidence 5789999999999999999999999998 59999998765 33444442 22 24556677899999999887
Q ss_pred -ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 -APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 -~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+. .+ ++|+++
T Consensus 214 t~~~i~~~~~~~mk------~g--ilin~s 235 (333)
T 2d0i_A 214 TYHIINEERVKKLE------GK--YLVNIG 235 (333)
T ss_dssp TTTSBCHHHHHHTB------TC--EEEECS
T ss_pred HHHHhCHHHHhhCC------CC--EEEECC
Confidence 3455544444331 23 778876
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.97 E-value=7.7e-06 Score=80.04 Aligned_cols=78 Identities=22% Similarity=0.368 Sum_probs=59.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-------------------HHHHHHHHHhCC----cceeecc-
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-------------------ERVAAICEELNG----VEIIYKP- 299 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-------------------~ra~~la~~~g~----~~~~~~~- 299 (513)
+.+++|+|+|+|++|..++++|...|+.+|+++|++. .|++.+++.+.. ..+...+
T Consensus 29 l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~ 108 (249)
T 1jw9_B 29 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA 108 (249)
T ss_dssp HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred HhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEec
Confidence 3578999999999999999999999999999999987 688777766531 1222211
Q ss_pred -c--chHHhhcCCCcEEEEcCCCCc
Q 010322 300 -L--SEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 300 -~--~~~~~~l~~aDVVI~AT~s~~ 321 (513)
+ ++..+.+.++|+||+||.+..
T Consensus 109 ~~~~~~~~~~~~~~DvVi~~~d~~~ 133 (249)
T 1jw9_B 109 LLDDAELAALIAEHDLVLDCTDNVA 133 (249)
T ss_dssp CCCHHHHHHHHHTSSEEEECCSSHH
T ss_pred cCCHhHHHHHHhCCCEEEEeCCCHH
Confidence 2 234556789999999998754
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=97.97 E-value=1.7e-05 Score=82.74 Aligned_cols=94 Identities=13% Similarity=0.151 Sum_probs=69.5
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC-
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE- 320 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~- 320 (513)
..+.|++|+|||.|.||+.+++.|...|. +|+++||+..+. ..+..+|. .. ..++.+.+..+|+|+.+++..
T Consensus 187 ~~l~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~~~~-~~~~~~G~---~~--~~~l~ell~~aDvV~l~~Plt~ 259 (393)
T 2nac_A 187 YDLEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPE-SVEKELNL---TW--HATREDMYPVCDVVTLNCPLHP 259 (393)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCH-HHHHHHTC---EE--CSSHHHHGGGCSEEEECSCCCT
T ss_pred ccCCCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEcCCccch-hhHhhcCc---ee--cCCHHHHHhcCCEEEEecCCch
Confidence 35789999999999999999999999998 499999986544 34455553 22 235567788999999998854
Q ss_pred --ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 --APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 --~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+. ...++|+++
T Consensus 260 ~t~~li~~~~l~~mk-------~gailIN~a 283 (393)
T 2nac_A 260 ETEHMINDETLKLFK-------RGAYIVNTA 283 (393)
T ss_dssp TTTTCBSHHHHTTSC-------TTEEEEECS
T ss_pred HHHHHhhHHHHhhCC-------CCCEEEECC
Confidence 4566666665542 236788876
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=97.96 E-value=7.5e-06 Score=83.29 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=61.6
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC-
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE- 320 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~- 320 (513)
..+.|++|+|||.|.||+.+++.|+..|. +|+++||++.... .+. ......++.+.+..+|+|+.+++..
T Consensus 136 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~----~~~----~~~~~~~l~ell~~aDvV~l~lPlt~ 206 (324)
T 3hg7_A 136 QGLKGRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRSGRERA----GFD----QVYQLPALNKMLAQADVIVSVLPATR 206 (324)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCCCT----TCS----EEECGGGHHHHHHTCSEEEECCCCCS
T ss_pred cccccceEEEEEECHHHHHHHHHHHhCCC-EEEEEcCChHHhh----hhh----cccccCCHHHHHhhCCEEEEeCCCCH
Confidence 35789999999999999999999999998 5999999863321 111 1223456777888999999998754
Q ss_pred --ccCCChhhhhcC
Q 010322 321 --APLFLKDHVQDL 332 (513)
Q Consensus 321 --~~vi~~~~l~~~ 332 (513)
..+++.+.+..+
T Consensus 207 ~T~~li~~~~l~~m 220 (324)
T 3hg7_A 207 ETHHLFTASRFEHC 220 (324)
T ss_dssp SSTTSBCTTTTTCS
T ss_pred HHHHHhHHHHHhcC
Confidence 456666666554
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=97.95 E-value=3.6e-05 Score=82.06 Aligned_cols=93 Identities=11% Similarity=0.104 Sum_probs=71.1
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
..+.|++|+|||.|.||+.+++.|+..|+ +|++++|++.+... +...+ +.+ .++.+.+..+|+||.+++. .
T Consensus 253 ~~l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~~~~-a~~~g---~~~---~~l~ell~~aDiVi~~~~t-~ 323 (479)
T 1v8b_A 253 FLISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQ-AVMEG---FNV---VTLDEIVDKGDFFITCTGN-V 323 (479)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHH-HHTTT---CEE---CCHHHHTTTCSEEEECCSS-S
T ss_pred cccCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhhHHH-HHHcC---CEe---cCHHHHHhcCCEEEECCCh-h
Confidence 36799999999999999999999999998 59999999877533 22333 222 3566778899999999854 4
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEeccC
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDISV 350 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDlav 350 (513)
.+++.+.+..+. ...+++|++-
T Consensus 324 ~lI~~~~l~~MK-------~gailiNvgr 345 (479)
T 1v8b_A 324 DVIKLEHLLKMK-------NNAVVGNIGH 345 (479)
T ss_dssp SSBCHHHHTTCC-------TTCEEEECSS
T ss_pred hhcCHHHHhhcC-------CCcEEEEeCC
Confidence 567777777653 2378899873
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.95 E-value=2e-05 Score=79.70 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=68.7
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
..+.|++|+|||.|.||+.+++.|+..|+ +|++++|++++. .+..+|. .. .++.+.+..+|+|+.+++...
T Consensus 138 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~--~~~~~g~---~~---~~l~ell~~aDvVvl~~P~~~ 208 (313)
T 2ekl_A 138 LELAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILDIRE--KAEKINA---KA---VSLEELLKNSDVISLHVTVSK 208 (313)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSCCHH--HHHHTTC---EE---CCHHHHHHHCSEEEECCCCCT
T ss_pred CCCCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCcchh--HHHhcCc---ee---cCHHHHHhhCCEEEEeccCCh
Confidence 35789999999999999999999999998 599999987664 2445553 22 245566778999999998643
Q ss_pred ---cCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 322 ---PLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 322 ---~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
.+++.+.+..+. ...++||++
T Consensus 209 ~t~~li~~~~l~~mk-------~ga~lIn~a 232 (313)
T 2ekl_A 209 DAKPIIDYPQFELMK-------DNVIIVNTS 232 (313)
T ss_dssp TSCCSBCHHHHHHSC-------TTEEEEESS
T ss_pred HHHHhhCHHHHhcCC-------CCCEEEECC
Confidence 456655555542 237888886
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.4e-05 Score=79.42 Aligned_cols=69 Identities=26% Similarity=0.380 Sum_probs=56.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCC
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGC--TKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~--~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
.++|.|||+|.||..++..|...|. .+|+++||++++++.+++.+|. . ...+..+.+.++|+||.|++.
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi---~--~~~~~~~~~~~aDvVilav~p 73 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGV---H--TTQDNRQGALNADVVVLAVKP 73 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCC---E--EESCHHHHHSSCSEEEECSCG
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCC---E--EeCChHHHHhcCCeEEEEeCH
Confidence 4689999999999999999999986 2599999999999888887653 2 234555667899999999964
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=97.94 E-value=5.7e-06 Score=82.19 Aligned_cols=68 Identities=24% Similarity=0.282 Sum_probs=55.4
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
++|.|||+|.||..++..|...|.. |+++||++++++.+.+. |. . ...+..+.+.++|+||.|++.+.
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~-V~~~dr~~~~~~~~~~~-g~---~--~~~~~~~~~~~advvi~~v~~~~ 69 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFD-VTVWNRNPAKCAPLVAL-GA---R--QASSPAEVCAACDITIAMLADPA 69 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCC-EEEECSSGGGGHHHHHH-TC---E--ECSCHHHHHHHCSEEEECCSSHH
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCe-EEEEcCCHHHHHHHHHC-CC---e--ecCCHHHHHHcCCEEEEEcCCHH
Confidence 4799999999999999999999975 99999999998777654 32 2 23455666678999999999864
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=97.94 E-value=6.4e-06 Score=83.86 Aligned_cols=92 Identities=17% Similarity=0.286 Sum_probs=66.5
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC-
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE- 320 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~- 320 (513)
..+.|++|+|||.|.||+.+++.|...|. +|+++||++..... +. ......++.+.+..+|+|+.+++..
T Consensus 133 ~~l~gktvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~----~~----~~~~~~~l~ell~~aDvV~l~lPlt~ 203 (324)
T 3evt_A 133 STLTGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTTGHPADH----FH----ETVAFTATADALATANFIVNALPLTP 203 (324)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCCCCTT----CS----EEEEGGGCHHHHHHCSEEEECCCCCG
T ss_pred ccccCCeEEEECcCHHHHHHHHHHHhCCC-EEEEECCCcchhHh----Hh----hccccCCHHHHHhhCCEEEEcCCCch
Confidence 35789999999999999999999999998 59999998654311 11 1123345666778999999998764
Q ss_pred --ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 --APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 --~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+.+ ..++||++
T Consensus 204 ~t~~li~~~~l~~mk~-------gailIN~a 227 (324)
T 3evt_A 204 TTHHLFSTELFQQTKQ-------QPMLINIG 227 (324)
T ss_dssp GGTTCBSHHHHHTCCS-------CCEEEECS
T ss_pred HHHHhcCHHHHhcCCC-------CCEEEEcC
Confidence 45677777665432 25666654
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.5e-05 Score=81.82 Aligned_cols=92 Identities=14% Similarity=0.123 Sum_probs=67.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+.|++|+|||.|.||+.+++.|...|+ +|+++||+..+. .+..+|. .. ..++.+.+..+|+|+.+++..
T Consensus 165 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~~~~~g~---~~--~~~l~ell~~aDvV~l~~P~t~~ 236 (347)
T 1mx3_A 165 RIRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDG--VERALGL---QR--VSTLQDLLFHSDCVTLHCGLNEH 236 (347)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCTT--HHHHHTC---EE--CSSHHHHHHHCSEEEECCCCCTT
T ss_pred CCCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcchh--hHhhcCC---ee--cCCHHHHHhcCCEEEEcCCCCHH
Confidence 5789999999999999999999999998 599999986542 3344542 21 234556677899999998764
Q ss_pred -ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 -APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 -~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+. ...++|+++
T Consensus 237 t~~li~~~~l~~mk-------~gailIN~a 259 (347)
T 1mx3_A 237 NHHLINDFTVKQMR-------QGAFLVNTA 259 (347)
T ss_dssp CTTSBSHHHHTTSC-------TTEEEEECS
T ss_pred HHHHhHHHHHhcCC-------CCCEEEECC
Confidence 3467666665542 236788876
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=97.92 E-value=1.9e-05 Score=80.03 Aligned_cols=81 Identities=20% Similarity=0.263 Sum_probs=61.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+.|++|+|||.|.||+.+++.|...|.+ |++++|++.... +. .......++.+.+..+|+|+.+++..
T Consensus 136 ~l~g~tvGIiG~G~IG~~vA~~l~~~G~~-V~~~dr~~~~~~-------~~-~~~~~~~~l~ell~~aDiV~l~~Plt~~ 206 (315)
T 3pp8_A 136 TREEFSVGIMGAGVLGAKVAESLQAWGFP-LRCWSRSRKSWP-------GV-ESYVGREELRAFLNQTRVLINLLPNTAQ 206 (315)
T ss_dssp CSTTCCEEEECCSHHHHHHHHHHHTTTCC-EEEEESSCCCCT-------TC-EEEESHHHHHHHHHTCSEEEECCCCCGG
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEcCCchhhh-------hh-hhhcccCCHHHHHhhCCEEEEecCCchh
Confidence 57899999999999999999999999995 999999865321 11 11222356777788999999998754
Q ss_pred -ccCCChhhhhcC
Q 010322 321 -APLFLKDHVQDL 332 (513)
Q Consensus 321 -~~vi~~~~l~~~ 332 (513)
..+++.+.+..+
T Consensus 207 t~~li~~~~l~~m 219 (315)
T 3pp8_A 207 TVGIINSELLDQL 219 (315)
T ss_dssp GTTCBSHHHHTTS
T ss_pred hhhhccHHHHhhC
Confidence 446776666654
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.91 E-value=5.2e-05 Score=65.85 Aligned_cols=74 Identities=20% Similarity=0.348 Sum_probs=54.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc---chHHh-hcCCCcEEEEcCCCCc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL---SEMLS-CAADADVVFTSTASEA 321 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~---~~~~~-~l~~aDVVI~AT~s~~ 321 (513)
+++|+|+|+|.+|..+++.|...|. +|++++|++++.+.+.+.++. .....+. +.+.+ .+.++|+||.||+.+.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~-~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~ 81 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDA-LVINGDCTKIKTLEDAGIEDADMYIAVTGKEE 81 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSS-EEEESCTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhcCc-EEEEcCCCCHHHHHHcCcccCCEEEEeeCCch
Confidence 5789999999999999999999997 599999999988777765542 1111111 12222 2678999999998753
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=97.91 E-value=2.3e-05 Score=80.41 Aligned_cols=94 Identities=14% Similarity=0.122 Sum_probs=68.4
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHH-HcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLV-AKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~-~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
..+.|++|+|||+|.||+.+++.|. ..|. +|+++||+..+.+. +.+++. .+. .++.+.+..+|+|+.|++..
T Consensus 159 ~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~~~~~~-~~~~g~---~~~--~~l~ell~~aDvVil~vp~~ 231 (348)
T 2w2k_A 159 HNPRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPADAET-EKALGA---ERV--DSLEELARRSDCVSVSVPYM 231 (348)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHH-HHHHTC---EEC--SSHHHHHHHCSEEEECCCCS
T ss_pred cCCCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCCcchhh-HhhcCc---EEe--CCHHHHhccCCEEEEeCCCC
Confidence 4688999999999999999999999 8998 59999998765533 334442 222 34556677899999999875
Q ss_pred c---cCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 A---PLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 ~---~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
. .+++.+.+..+. ...++|+++
T Consensus 232 ~~t~~li~~~~l~~mk-------~gailin~s 256 (348)
T 2w2k_A 232 KLTHHLIDEAFFAAMK-------PGSRIVNTA 256 (348)
T ss_dssp GGGTTCBCHHHHHHSC-------TTEEEEECS
T ss_pred hHHHHHhhHHHHhcCC-------CCCEEEECC
Confidence 3 466655555432 236778875
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=2.3e-05 Score=79.52 Aligned_cols=92 Identities=11% Similarity=0.143 Sum_probs=67.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeC-CHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNR-SEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR-s~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.+.|++|+|||.|.||+.+++.|...|. +|+++|| ++.+. .+..+|. .. .+++.+.+..+|+|+.|++...
T Consensus 143 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~~--~~~~~g~---~~--~~~l~ell~~aDvVil~~p~~~ 214 (320)
T 1gdh_A 143 KLDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASSS--DEASYQA---TF--HDSLDSLLSVSQFFSLNAPSTP 214 (320)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCHH--HHHHHTC---EE--CSSHHHHHHHCSEEEECCCCCT
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcChh--hhhhcCc---EE--cCCHHHHHhhCCEEEEeccCch
Confidence 5789999999999999999999999998 5999999 77653 3445553 22 2245666778999999998653
Q ss_pred ---cCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 322 ---PLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 322 ---~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
.+++.+.+..+. ...++||++
T Consensus 215 ~t~~~i~~~~l~~mk-------~gailIn~a 238 (320)
T 1gdh_A 215 ETRYFFNKATIKSLP-------QGAIVVNTA 238 (320)
T ss_dssp TTTTCBSHHHHTTSC-------TTEEEEECS
T ss_pred HHHhhcCHHHHhhCC-------CCcEEEECC
Confidence 455555554432 236778875
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.8e-05 Score=84.72 Aligned_cols=77 Identities=18% Similarity=0.321 Sum_probs=57.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC---CCcEEEEcCCCC
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA---DADVVFTSTASE 320 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~---~aDVVI~AT~s~ 320 (513)
...++|.|||+|.||..++..|...|.. |+++||++++++.+.+..++..+. ...++.+.+. .+|+||.|++++
T Consensus 13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~-V~v~~r~~~~~~~l~~~~~~~gi~--~~~s~~e~v~~l~~aDvVil~Vp~~ 89 (480)
T 2zyd_A 13 MSKQQIGVVGMAVMGRNLALNIESRGYT-VSIFNRSREKTEEVIAENPGKKLV--PYYTVKEFVESLETPRRILLMVKAG 89 (480)
T ss_dssp --CBSEEEECCSHHHHHHHHHHHTTTCC-EEEECSSHHHHHHHHHHSTTSCEE--ECSSHHHHHHTBCSSCEEEECSCSS
T ss_pred cCCCeEEEEccHHHHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHhhCCCCCeE--EeCCHHHHHhCCCCCCEEEEECCCH
Confidence 4567899999999999999999999985 999999999998888765211112 2234444444 499999999997
Q ss_pred ccC
Q 010322 321 APL 323 (513)
Q Consensus 321 ~~v 323 (513)
..+
T Consensus 90 ~~v 92 (480)
T 2zyd_A 90 AGT 92 (480)
T ss_dssp SHH
T ss_pred HHH
Confidence 543
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.2e-05 Score=91.31 Aligned_cols=163 Identities=20% Similarity=0.253 Sum_probs=93.6
Q ss_pred cCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCcc--ccccccccCC---CchHH
Q 010322 154 YNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKR--VRTETNIAAG---AVSVS 228 (513)
Q Consensus 154 ~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~--Vr~et~i~~~---~~Sva 228 (513)
.|||+++.+.+|++|++.+.+|+.++.. .++.|.+++.++.. ++-..+++.. .+.++
T Consensus 268 lG~E~aG~V~~vG~~V~~~~vGDrV~~~------------------~~G~~ae~~~v~~~~~~~iP~~ls~~~AA~l~~~ 329 (795)
T 3slk_A 268 LGSEGAGVVVETGPGVTGLAPGDRVMGM------------------IPKAFGPLAVADHRMVTRIPAGWSFARAASVPIV 329 (795)
T ss_dssp SCCCEEEEEEEECSSCCSSCTTCEEEEC------------------CSSCSSSEEEEETTSEEECCTTCCHHHHHHHHHH
T ss_pred ccceeEEEEEEeCCCCCcCCCCCEEEEE------------------ecCCCcCEEEeehHHEEECCCCCCHHHHHhhhHH
Confidence 7999999999999999999999988642 11233333333321 0101111100 01111
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-chHH--
Q 010322 229 SAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL-SEML-- 304 (513)
Q Consensus 229 ~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~-~~~~-- 304 (513)
+...-.+-.... .-.+|++|+|.|+ |++|.++++.++..|++ |+++.++. +.+.+ + +|... .+... .+..
T Consensus 330 ~~Ta~~al~~~a-~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~-V~~t~~~~-k~~~l-~-lga~~-v~~~~~~~~~~~ 403 (795)
T 3slk_A 330 FLTAYYALVDLA-GLRPGESLLVHSAAGGVGMAAIQLARHLGAE-VYATASED-KWQAV-E-LSREH-LASSRTCDFEQQ 403 (795)
T ss_dssp HHHHHCCCCCCT-CCCTTCCEEEESTTBHHHHHHHHHHHHTTCC-EEEECCGG-GGGGS-C-SCGGG-EECSSSSTHHHH
T ss_pred HHHHHHHHHHHh-CCCCCCEEEEecCCCHHHHHHHHHHHHcCCE-EEEEeChH-Hhhhh-h-cChhh-eeecCChhHHHH
Confidence 111111100111 2347999999997 99999999999999995 88888765 43222 2 55321 22211 1222
Q ss_pred --hhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 305 --SCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 305 --~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+.. .++|+||+|++.. .+ ...++.+. ++|+.+.++.
T Consensus 404 i~~~t~g~GvDvVld~~gg~-~~--~~~l~~l~-----~~Gr~v~iG~ 443 (795)
T 3slk_A 404 FLGATGGRGVDVVLNSLAGE-FA--DASLRMLP-----RGGRFLELGK 443 (795)
T ss_dssp HHHHSCSSCCSEEEECCCTT-TT--HHHHTSCT-----TCEEEEECCS
T ss_pred HHHHcCCCCeEEEEECCCcH-HH--HHHHHHhc-----CCCEEEEecc
Confidence 222 3799999998763 22 45666553 4676666654
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.89 E-value=9.7e-06 Score=81.25 Aligned_cols=88 Identities=11% Similarity=0.103 Sum_probs=65.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+.|++|+|||.|.||+.+++.|...|. +|+++||++..... .. ..+++.+.+..+|+|+.+++..
T Consensus 119 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~---------~~--~~~~l~ell~~aDiV~l~~P~t~~ 186 (290)
T 3gvx_A 119 LLYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSSVDQNV---------DV--ISESPADLFRQSDFVLIAIPLTDK 186 (290)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSCCCTTC---------SE--ECSSHHHHHHHCSEEEECCCCCTT
T ss_pred eeecchheeeccCchhHHHHHHHHhhCc-EEEEEecccccccc---------cc--ccCChHHHhhccCeEEEEeecccc
Confidence 4689999999999999999999999998 59999998654311 11 2245667778999999998853
Q ss_pred -ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 -APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 -~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+. ...++||++
T Consensus 187 t~~li~~~~l~~mk-------~gailIN~a 209 (290)
T 3gvx_A 187 TRGMVNSRLLANAR-------KNLTIVNVA 209 (290)
T ss_dssp TTTCBSHHHHTTCC-------TTCEEEECS
T ss_pred chhhhhHHHHhhhh-------cCceEEEee
Confidence 3456666666543 225777775
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=97.89 E-value=2.7e-05 Score=80.12 Aligned_cols=93 Identities=16% Similarity=0.151 Sum_probs=67.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC-
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE- 320 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~- 320 (513)
..+.|++|+|||.|.||+.+++.|+..|. +|+++||+... ..+...|. .. .+++.+.+..+|+|+.+++..
T Consensus 156 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~~~~~g~---~~--~~~l~ell~~aDiV~l~~Plt~ 227 (352)
T 3gg9_A 156 RVLKGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGRENSK--ERARADGF---AV--AESKDALFEQSDVLSVHLRLND 227 (352)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSHHHH--HHHHHTTC---EE--CSSHHHHHHHCSEEEECCCCST
T ss_pred ccCCCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCCCCH--HHHHhcCc---eE--eCCHHHHHhhCCEEEEeccCcH
Confidence 35789999999999999999999999998 59999998633 33334442 22 245666778999999998754
Q ss_pred --ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 --APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 --~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+. ...++|+++
T Consensus 228 ~t~~li~~~~l~~mk-------~gailIN~a 251 (352)
T 3gg9_A 228 ETRSIITVADLTRMK-------PTALFVNTS 251 (352)
T ss_dssp TTTTCBCHHHHTTSC-------TTCEEEECS
T ss_pred HHHHhhCHHHHhhCC-------CCcEEEECC
Confidence 3466666666543 225777775
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.2e-05 Score=82.85 Aligned_cols=69 Identities=22% Similarity=0.281 Sum_probs=54.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCC---cEEEEcCCCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADA---DVVFTSTASE 320 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~a---DVVI~AT~s~ 320 (513)
.+++|.|||+|.||..++..|...|. +|+++||++++++.+.+. +. . ...++.+.+..+ |+||.|++.+
T Consensus 21 ~~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~-g~---~--~~~s~~e~~~~a~~~DvVi~~vp~~ 92 (358)
T 4e21_A 21 QSMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALERE-GI---A--GARSIEEFCAKLVKPRVVWLMVPAA 92 (358)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTT-TC---B--CCSSHHHHHHHSCSSCEEEECSCGG
T ss_pred cCCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHC-CC---E--EeCCHHHHHhcCCCCCEEEEeCCHH
Confidence 46799999999999999999999997 599999999998776643 32 1 233444444455 9999999887
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.5e-05 Score=80.19 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=58.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
...++|.|||+|.||..+++.|...|.. |+++||++++++.+++. |. . ...+..+.+.++|+||.|++.+.
T Consensus 7 ~~~~~IgiIG~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~~~~~-g~---~--~~~~~~e~~~~aDvVi~~vp~~~ 77 (306)
T 3l6d_A 7 SFEFDVSVIGLGAMGTIMAQVLLKQGKR-VAIWNRSPGKAAALVAA-GA---H--LCESVKAALSASPATIFVLLDNH 77 (306)
T ss_dssp CCSCSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSHHHHHHHHHH-TC---E--ECSSHHHHHHHSSEEEECCSSHH
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHC-CC---e--ecCCHHHHHhcCCEEEEEeCCHH
Confidence 4567899999999999999999999985 99999999998877764 42 2 23455666778999999999765
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.88 E-value=2e-05 Score=80.92 Aligned_cols=92 Identities=20% Similarity=0.307 Sum_probs=67.2
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC-
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE- 320 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~- 320 (513)
..+.|++|+|||.|.||+.+++.|+..|. +|+++||++...+. +. +. .. .+++.+.+..+|+|+.+++..
T Consensus 169 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~-~~--g~---~~--~~~l~ell~~sDvV~l~~Plt~ 239 (345)
T 4g2n_A 169 MGLTGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRLSHAL-EE--GA---IY--HDTLDSLLGASDIFLIAAPGRP 239 (345)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHTTTC-EEEEECSSCCCHHH-HT--TC---EE--CSSHHHHHHTCSEEEECSCCCG
T ss_pred cccCCCEEEEEEeChhHHHHHHHHHHCCC-EEEEECCCCcchhh-hc--CC---eE--eCCHHHHHhhCCEEEEecCCCH
Confidence 35789999999999999999999999998 59999998644321 11 32 22 246667788999999999874
Q ss_pred --ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 --APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 --~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+. ...++|+++
T Consensus 240 ~T~~li~~~~l~~mk-------~gailIN~a 263 (345)
T 4g2n_A 240 ELKGFLDHDRIAKIP-------EGAVVINIS 263 (345)
T ss_dssp GGTTCBCHHHHHHSC-------TTEEEEECS
T ss_pred HHHHHhCHHHHhhCC-------CCcEEEECC
Confidence 3466777666553 226667765
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.1e-05 Score=86.26 Aligned_cols=79 Identities=23% Similarity=0.251 Sum_probs=57.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee--ecccchHHhhcCCCcEEEEcCCCC
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII--YKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~--~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
++.+++|+|+|+|.+|+.++..|...|..+|++++|+.++++++++..+...+. +.+.+++.+.+.++|+||+||+..
T Consensus 20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~ 99 (467)
T 2axq_A 20 RHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYT 99 (467)
T ss_dssp ---CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGG
T ss_pred CCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchh
Confidence 467889999999999999999999884336999999999998888653211011 112235556677999999999875
Q ss_pred c
Q 010322 321 A 321 (513)
Q Consensus 321 ~ 321 (513)
.
T Consensus 100 ~ 100 (467)
T 2axq_A 100 F 100 (467)
T ss_dssp G
T ss_pred h
Confidence 3
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=8.7e-06 Score=73.25 Aligned_cols=78 Identities=22% Similarity=0.451 Sum_probs=55.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc---chHHhh-cCCCcEEEEcCC
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL---SEMLSC-AADADVVFTSTA 318 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~---~~~~~~-l~~aDVVI~AT~ 318 (513)
...+++|+|+|+|.+|+.+++.|...|. +|++++|++++++.+....+. .....+. +.+.+. +.++|+||.||+
T Consensus 16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~g~-~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~ 93 (155)
T 2g1u_A 16 KQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEFSG-FTVVGDAAEFETLKECGMEKADMVFAFTN 93 (155)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTTCCS-EEEESCTTSHHHHHTTTGGGCSEEEECSS
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhcCCC-cEEEecCCCHHHHHHcCcccCCEEEEEeC
Confidence 4578999999999999999999999998 699999999887544323332 1111111 123333 568999999999
Q ss_pred CCcc
Q 010322 319 SEAP 322 (513)
Q Consensus 319 s~~~ 322 (513)
.+..
T Consensus 94 ~~~~ 97 (155)
T 2g1u_A 94 DDST 97 (155)
T ss_dssp CHHH
T ss_pred CcHH
Confidence 8643
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=97.87 E-value=2.4e-05 Score=79.74 Aligned_cols=92 Identities=21% Similarity=0.331 Sum_probs=65.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+.|++|+|||+|.||+.+++.|...|.+ |++++|+.++.+. +..++. ... ++.+.+.++|+||.|++.+
T Consensus 152 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~-~~~~g~---~~~---~l~e~l~~aDvVi~~vp~~~~ 223 (330)
T 2gcg_A 152 GLTQSTVGIIGLGRIGQAIARRLKPFGVQ-RFLYTGRQPRPEE-AAEFQA---EFV---STPELAAQSDFIVVACSLTPA 223 (330)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHGGGTCC-EEEEESSSCCHHH-HHTTTC---EEC---CHHHHHHHCSEEEECCCCCTT
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCCCcchhH-HHhcCc---eeC---CHHHHHhhCCEEEEeCCCChH
Confidence 57899999999999999999999999985 9999998765533 333332 222 4556677899999999875
Q ss_pred -ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 -APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 -~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+. ...++|+.+
T Consensus 224 t~~~i~~~~~~~mk-------~gailIn~s 246 (330)
T 2gcg_A 224 TEGLCNKDFFQKMK-------ETAVFINIS 246 (330)
T ss_dssp TTTCBSHHHHHHSC-------TTCEEEECS
T ss_pred HHHhhCHHHHhcCC-------CCcEEEECC
Confidence 3455544444432 124667765
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.5e-05 Score=80.98 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=66.7
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC-
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE- 320 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~- 320 (513)
..+.|++|+|||.|.||+.+++.|...|. +|+++||+.... . .+ ..+.++.+.+..+|+|+.+++..
T Consensus 115 ~~l~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~~~~-----~-~~-----~~~~sl~ell~~aDiV~l~~Plt~ 182 (381)
T 3oet_A 115 FSLRDRTIGIVGVGNVGSRLQTRLEALGI-RTLLCDPPRAAR-----G-DE-----GDFRTLDELVQEADVLTFHTPLYK 182 (381)
T ss_dssp CCGGGCEEEEECCSHHHHHHHHHHHHTTC-EEEEECHHHHHT-----T-CC-----SCBCCHHHHHHHCSEEEECCCCCC
T ss_pred CccCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCChHHh-----c-cC-----cccCCHHHHHhhCCEEEEcCcCCc
Confidence 46889999999999999999999999998 499999854322 1 11 12346667778999999998754
Q ss_pred ------ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 ------APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 ------~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+. ...++|+.+
T Consensus 183 ~g~~~T~~li~~~~l~~mk-------~gailIN~a 210 (381)
T 3oet_A 183 DGPYKTLHLADETLIRRLK-------PGAILINAC 210 (381)
T ss_dssp SSTTCCTTSBCHHHHHHSC-------TTEEEEECS
T ss_pred cccccchhhcCHHHHhcCC-------CCcEEEECC
Confidence 2367777776653 237888886
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.86 E-value=4.6e-05 Score=70.18 Aligned_cols=77 Identities=16% Similarity=0.197 Sum_probs=57.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeeccc---chHHhh--cCCCcEEEEc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPL---SEMLSC--AADADVVFTS 316 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~---~~~~~~--l~~aDVVI~A 316 (513)
+..+++|+|+|+|.+|..+++.|... |.. |+++++++++.+.+. ..|. .....+. +.+.+. +.++|+||.|
T Consensus 36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~-V~vid~~~~~~~~~~-~~g~-~~~~gd~~~~~~l~~~~~~~~ad~vi~~ 112 (183)
T 3c85_A 36 NPGHAQVLILGMGRIGTGAYDELRARYGKI-SLGIEIREEAAQQHR-SEGR-NVISGDATDPDFWERILDTGHVKLVLLA 112 (183)
T ss_dssp CCTTCSEEEECCSHHHHHHHHHHHHHHCSC-EEEEESCHHHHHHHH-HTTC-CEEECCTTCHHHHHTBCSCCCCCEEEEC
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhccCCe-EEEEECCHHHHHHHH-HCCC-CEEEcCCCCHHHHHhccCCCCCCEEEEe
Confidence 35678999999999999999999998 985 999999999886654 3443 1111122 224444 6789999999
Q ss_pred CCCCcc
Q 010322 317 TASEAP 322 (513)
Q Consensus 317 T~s~~~ 322 (513)
|+....
T Consensus 113 ~~~~~~ 118 (183)
T 3c85_A 113 MPHHQG 118 (183)
T ss_dssp CSSHHH
T ss_pred CCChHH
Confidence 987543
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=2.5e-05 Score=76.15 Aligned_cols=87 Identities=17% Similarity=0.289 Sum_probs=62.4
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccCCCh
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLK 326 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~ 326 (513)
.+|.|||+|.||..++..|...|..+|++++|++++++.+.+.+|. .+ ..+..+.+ ++|+||.|++ +..+ .
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~---~~--~~~~~~~~-~~D~vi~~v~-~~~~--~ 71 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGV---ET--SATLPELH-SDDVLILAVK-PQDM--E 71 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCC---EE--ESSCCCCC-TTSEEEECSC-HHHH--H
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCC---EE--eCCHHHHh-cCCEEEEEeC-chhH--H
Confidence 3799999999999999999998833699999999999888877653 22 23344556 8999999998 4333 3
Q ss_pred hhhhcCCchhhhcCCcEEEEec
Q 010322 327 DHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 327 ~~l~~~~~~~~~~~g~~viiDl 348 (513)
+.+..+.+ . ..+++|+
T Consensus 72 ~v~~~l~~-----~-~~ivv~~ 87 (263)
T 1yqg_A 72 AACKNIRT-----N-GALVLSV 87 (263)
T ss_dssp HHHTTCCC-----T-TCEEEEC
T ss_pred HHHHHhcc-----C-CCEEEEe
Confidence 34433321 1 2566776
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.85 E-value=1.6e-05 Score=80.45 Aligned_cols=86 Identities=19% Similarity=0.305 Sum_probs=63.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+.|++|+|||.|.||+.+++.|+..|. +|+++||+.++.. . ...++.+.+..+|+|+.+++..
T Consensus 141 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~~-----~--------~~~~l~ell~~aDvV~l~~p~~~~ 206 (311)
T 2cuk_A 141 DLQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHARTPKPLP-----Y--------PFLSLEELLKEADVVSLHTPLTPE 206 (311)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSSS-----S--------CBCCHHHHHHHCSEEEECCCCCTT
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHCCC-EEEEECCCCcccc-----c--------ccCCHHHHHhhCCEEEEeCCCChH
Confidence 5789999999999999999999999998 5999999875431 1 1245556677899999998765
Q ss_pred -ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 -APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 -~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+. ...++||++
T Consensus 207 t~~li~~~~l~~mk-------~ga~lin~s 229 (311)
T 2cuk_A 207 THRLLNRERLFAMK-------RGAILLNTA 229 (311)
T ss_dssp TTTCBCHHHHTTSC-------TTCEEEECS
T ss_pred HHhhcCHHHHhhCC-------CCcEEEECC
Confidence 3466655555432 225667765
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.5e-05 Score=78.72 Aligned_cols=71 Identities=21% Similarity=0.306 Sum_probs=54.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC--HHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS--EERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs--~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.++|.|||+|.||..++..|...|..+|+++||+ +++.+. ..+.|. . ...+..+.+.++|+||.|++.+..
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~-~~~~g~---~--~~~~~~e~~~~aDvVi~~vp~~~~ 96 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPR-AEELGV---S--CKASVAEVAGECDVIFSLVTAQAA 96 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHH-HHHTTC---E--ECSCHHHHHHHCSEEEECSCTTTH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHH-HHHCCC---E--EeCCHHHHHhcCCEEEEecCchhH
Confidence 4689999999999999999999998579999997 466544 344442 2 224555666789999999998754
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.84 E-value=3e-05 Score=80.08 Aligned_cols=92 Identities=17% Similarity=0.200 Sum_probs=67.3
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC-
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE- 320 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~- 320 (513)
..+.|++|+|||.|.||+.+++.|+..|. +|+++||+... ..+...|. .. .++.+.+..+|+|+.+++..
T Consensus 172 ~~l~gktvGIIGlG~IG~~vA~~l~~fG~-~V~~~d~~~~~--~~~~~~g~---~~---~~l~ell~~aDvV~l~~Plt~ 242 (365)
T 4hy3_A 172 RLIAGSEIGIVGFGDLGKALRRVLSGFRA-RIRVFDPWLPR--SMLEENGV---EP---ASLEDVLTKSDFIFVVAAVTS 242 (365)
T ss_dssp CCSSSSEEEEECCSHHHHHHHHHHTTSCC-EEEEECSSSCH--HHHHHTTC---EE---CCHHHHHHSCSEEEECSCSSC
T ss_pred cccCCCEEEEecCCcccHHHHHhhhhCCC-EEEEECCCCCH--HHHhhcCe---ee---CCHHHHHhcCCEEEEcCcCCH
Confidence 35789999999999999999999999998 59999998532 22334442 22 35666778999999998765
Q ss_pred --ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 --APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 --~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+. ...++|+++
T Consensus 243 ~T~~li~~~~l~~mk-------~gailIN~a 266 (365)
T 4hy3_A 243 ENKRFLGAEAFSSMR-------RGAAFILLS 266 (365)
T ss_dssp C---CCCHHHHHTSC-------TTCEEEECS
T ss_pred HHHhhcCHHHHhcCC-------CCcEEEECc
Confidence 4467777776653 226777776
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=97.84 E-value=2.7e-05 Score=75.88 Aligned_cols=66 Identities=24% Similarity=0.291 Sum_probs=55.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
.+|.|||+|.||..++..|...|. .|.+++|++++++.+++.+|. . ...+..+.+.++|+||.|++
T Consensus 4 m~i~iiG~G~mG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~g~---~--~~~~~~~~~~~~D~Vi~~v~ 69 (259)
T 2ahr_A 4 MKIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLAL---P--YAMSHQDLIDQVDLVILGIK 69 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTC---C--BCSSHHHHHHTCSEEEECSC
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHHcCC---E--eeCCHHHHHhcCCEEEEEeC
Confidence 589999999999999999998885 699999999999888877763 1 23445555678999999998
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.84 E-value=1.7e-05 Score=81.18 Aligned_cols=89 Identities=21% Similarity=0.247 Sum_probs=62.5
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC-
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE- 320 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~- 320 (513)
..+.|++|+|||.|.||+.+++.|...|. +|+++||++.+. .+. . ...++.+.+..+|+|+.+++.+
T Consensus 167 ~~l~gktiGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~------~~~---~--~~~sl~ell~~aDvVil~vP~t~ 234 (340)
T 4dgs_A 167 HSPKGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRSTLSG------VDW---I--AHQSPVDLARDSDVLAVCVAASA 234 (340)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCTT------SCC---E--ECSSHHHHHHTCSEEEECC----
T ss_pred ccccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCcccc------cCc---e--ecCCHHHHHhcCCEEEEeCCCCH
Confidence 35789999999999999999999999998 599999987541 111 1 2346677788999999998854
Q ss_pred --ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 --APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 --~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+. ...++||++
T Consensus 235 ~t~~li~~~~l~~mk-------~gailIN~a 258 (340)
T 4dgs_A 235 ATQNIVDASLLQALG-------PEGIVVNVA 258 (340)
T ss_dssp ------CHHHHHHTT-------TTCEEEECS
T ss_pred HHHHHhhHHHHhcCC-------CCCEEEECC
Confidence 3456666665543 226777875
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=97.81 E-value=8.9e-06 Score=81.36 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=55.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.++|.|||+|.||..++..|...|.. |+++||++++++.+.+. +. . ...+..+.+. +|+||.|++.+..
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~~~~~-g~---~--~~~~~~~~~~-aDvvi~~vp~~~~ 83 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGG-VTVYDIRIEAMTPLAEA-GA---T--LADSVADVAA-ADLIHITVLDDAQ 83 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTC-EEEECSSTTTSHHHHHT-TC---E--ECSSHHHHTT-SSEEEECCSSHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHC-CC---E--EcCCHHHHHh-CCEEEEECCChHH
Confidence 35899999999999999999999985 99999999988776653 32 2 2356667777 9999999997643
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=3.9e-05 Score=76.19 Aligned_cols=74 Identities=15% Similarity=0.245 Sum_probs=56.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh----------C-Cc---c-----eeecccchHHhh
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL----------N-GV---E-----IIYKPLSEMLSC 306 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~----------g-~~---~-----~~~~~~~~~~~~ 306 (513)
-++|.|||+|.||..++..|...|. +|+++||++++++.+.+.+ + .. . ..+....++.+.
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~ 82 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA 82 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence 3689999999999999999999998 5999999999886665542 1 00 0 001223566667
Q ss_pred cCCCcEEEEcCCCC
Q 010322 307 AADADVVFTSTASE 320 (513)
Q Consensus 307 l~~aDVVI~AT~s~ 320 (513)
+.++|+||.|++..
T Consensus 83 ~~~aDlVi~av~~~ 96 (283)
T 4e12_A 83 VKDADLVIEAVPES 96 (283)
T ss_dssp TTTCSEEEECCCSC
T ss_pred hccCCEEEEeccCc
Confidence 88999999999875
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=3.6e-05 Score=82.26 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=57.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhc---CCCcEEEEcCCCCccC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCA---ADADVVFTSTASEAPL 323 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l---~~aDVVI~AT~s~~~v 323 (513)
.+|.|||+|.||..++..|...|.. |+++||++++++.+.+.+++..+. ...++.+.+ ..+|+||.|++++.++
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~gi~--~~~s~~e~v~~l~~aDvVilavp~~~~v 82 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESRGYT-VAIYNRTTSKTEEVFKEHQDKNLV--FTKTLEEFVGSLEKPRRIMLMVQAGAAT 82 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSHHHHHHHHHHTTTSCEE--ECSSHHHHHHTBCSSCEEEECCCTTHHH
T ss_pred CcEEEEeeHHHHHHHHHHHHhCCCE-EEEEcCCHHHHHHHHHhCcCCCeE--EeCCHHHHHhhccCCCEEEEEccCchHH
Confidence 5799999999999999999999985 999999999998888765311122 233444444 3599999999997543
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.78 E-value=4.8e-05 Score=78.92 Aligned_cols=89 Identities=22% Similarity=0.293 Sum_probs=65.6
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC-
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE- 320 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~- 320 (513)
..+.|++|+|||.|.||+.+++.|...|+ +|+++||+.... ..+. .+.++.+.+..+|+|+.+++..
T Consensus 112 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~-----~~g~------~~~~l~ell~~aDvV~l~~Plt~ 179 (380)
T 2o4c_A 112 ADLAERTYGVVGAGQVGGRLVEVLRGLGW-KVLVCDPPRQAR-----EPDG------EFVSLERLLAEADVISLHTPLNR 179 (380)
T ss_dssp CCGGGCEEEEECCSHHHHHHHHHHHHTTC-EEEEECHHHHHH-----STTS------CCCCHHHHHHHCSEEEECCCCCS
T ss_pred cccCCCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCChhhh-----ccCc------ccCCHHHHHHhCCEEEEeccCcc
Confidence 46889999999999999999999999998 499999875432 1221 2245666677899999998763
Q ss_pred ------ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 ------APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 ------~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+. ...++|+.+
T Consensus 180 ~g~~~T~~li~~~~l~~mk-------~gailIN~s 207 (380)
T 2o4c_A 180 DGEHPTRHLLDEPRLAALR-------PGTWLVNAS 207 (380)
T ss_dssp SSSSCCTTSBCHHHHHTSC-------TTEEEEECS
T ss_pred ccccchhhhcCHHHHhhCC-------CCcEEEECC
Confidence 3466666666543 236788876
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=97.77 E-value=5.2e-05 Score=81.16 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=56.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC-Cccee-ecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN-GVEII-YKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g-~~~~~-~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.++|.|||+|.||..++..|...|.. |+++||++++.+.+.+... +..+. ..+.+++.+.+..+|+||.|++.+.+
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~ 81 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDHGFV-VCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQA 81 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHH
T ss_pred CCEEEEEChhHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHH
Confidence 46799999999999999999999984 9999999999988776521 11111 12223333335579999999999754
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=2.1e-05 Score=68.60 Aligned_cols=74 Identities=23% Similarity=0.371 Sum_probs=52.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc---chHHhh-cCCCcEEEEcCCC
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL---SEMLSC-AADADVVFTSTAS 319 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~---~~~~~~-l~~aDVVI~AT~s 319 (513)
+.+++|+|+|+|.+|+.+++.|...|.+ |+++++++++.+.+.. .+. .....+. +.+.+. +.++|+||.|++.
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~-v~~~d~~~~~~~~~~~-~~~-~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~ 80 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHRMGHE-VLAVDINEEKVNAYAS-YAT-HAVIANATEENELLSLGIRNFEYVIVAIGA 80 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCC-CEEEESCHHHHHTTTT-TCS-EEEECCTTCHHHHHTTTGGGCSEEEECCCS
T ss_pred CcCCcEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHH-hCC-EEEEeCCCCHHHHHhcCCCCCCEEEECCCC
Confidence 4578899999999999999999999985 9999999887754432 221 1111111 223333 5689999999998
Q ss_pred C
Q 010322 320 E 320 (513)
Q Consensus 320 ~ 320 (513)
+
T Consensus 81 ~ 81 (144)
T 2hmt_A 81 N 81 (144)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=97.76 E-value=6e-05 Score=72.60 Aligned_cols=75 Identities=16% Similarity=0.172 Sum_probs=55.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHH-HHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEE-RVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~-ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
++.|++|+|||+|.+|...++.|...|+. |+|++++.. ....+++..+ +.+....-..+.+.++|+||.||+.+.
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~-VtVvap~~~~~l~~l~~~~~---i~~i~~~~~~~dL~~adLVIaAT~d~~ 103 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQEGAA-ITVVAPTVSAEINEWEAKGQ---LRVKRKKVGEEDLLNVFFIVVATNDQA 103 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGGGCCC-EEEECSSCCHHHHHHHHTTS---CEEECSCCCGGGSSSCSEEEECCCCTH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEECCCCCHHHHHHHHcCC---cEEEECCCCHhHhCCCCEEEECCCCHH
Confidence 68999999999999999999999999995 999987653 3455655422 233221112345789999999999874
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.75 E-value=4e-05 Score=76.87 Aligned_cols=73 Identities=22% Similarity=0.319 Sum_probs=55.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc---ceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV---EIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~---~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
..++|.|||+|.||..+|..|+ .|. +|+++||++++++.+.+.+... .+. ...++.+ +.+||+||+|++...
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~~~~~~~~~~~~l~~~~~~~i~--~~~~~~~-~~~aDlVieavpe~~ 85 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDVSEKALEAAREQIPEELLSKIE--FTTTLEK-VKDCDIVMEAVFEDL 85 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCHHHHHHHHHHSCGGGGGGEE--EESSCTT-GGGCSEEEECCCSCH
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEECCHHHHHHHHHHHHHHHhCCeE--EeCCHHH-HcCCCEEEEcCcCCH
Confidence 4689999999999999999999 998 5999999999887766552100 111 2233333 678999999998876
Q ss_pred c
Q 010322 322 P 322 (513)
Q Consensus 322 ~ 322 (513)
.
T Consensus 86 ~ 86 (293)
T 1zej_A 86 N 86 (293)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=3.5e-05 Score=77.60 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=65.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+.|++|+|||.|.||+.+++.|...|. +|+++||++. . . +. ....++.+.+..+|+|+.+++..
T Consensus 121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~dr~~~-~-~-----~~-----~~~~~l~ell~~aDvV~l~~P~~~~ 187 (303)
T 1qp8_A 121 LIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPK-E-G-----PW-----RFTNSLEEALREARAAVCALPLNKH 187 (303)
T ss_dssp CCTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCC-C-S-----SS-----CCBSCSHHHHTTCSEEEECCCCSTT
T ss_pred CCCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcc-c-c-----Cc-----ccCCCHHHHHhhCCEEEEeCcCchH
Confidence 5789999999999999999999999998 5999999865 1 1 21 12345566788999999999775
Q ss_pred -ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 -APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 -~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+. ...++||++
T Consensus 188 t~~~i~~~~l~~mk-------~gailin~s 210 (303)
T 1qp8_A 188 TRGLVKYQHLALMA-------EDAVFVNVG 210 (303)
T ss_dssp TTTCBCHHHHTTSC-------TTCEEEECS
T ss_pred HHHHhCHHHHhhCC-------CCCEEEECC
Confidence 3466656665542 236888876
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=3e-05 Score=76.48 Aligned_cols=67 Identities=30% Similarity=0.340 Sum_probs=52.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
++|+|||+|.||..++..|.. |.+ |++++|++++++.+.+. |. ... . ..+.+.++|+||.|++.+..
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~-V~~~~~~~~~~~~~~~~-g~---~~~--~-~~~~~~~~D~vi~~v~~~~~ 68 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFP-TLVWNRTFEKALRHQEE-FG---SEA--V-PLERVAEARVIFTCLPTTRE 68 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSC-EEEECSSTHHHHHHHHH-HC---CEE--C-CGGGGGGCSEEEECCSSHHH
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCe-EEEEeCCHHHHHHHHHC-CC---ccc--C-HHHHHhCCCEEEEeCCChHH
Confidence 469999999999999999999 985 99999999988777654 32 111 1 33456789999999998753
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=2.7e-05 Score=79.80 Aligned_cols=89 Identities=16% Similarity=0.249 Sum_probs=66.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+.|++|+|||.|.||+.+++.|+..|. +|+++||++... ... .... .++.+.+..+|+|+.+++..
T Consensus 145 ~l~gktvgIiGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~------~~~-~~~~---~~l~ell~~aDvV~l~~Plt~~ 213 (343)
T 2yq5_A 145 EIYNLTVGLIGVGHIGSAVAEIFSAMGA-KVIAYDVAYNPE------FEP-FLTY---TDFDTVLKEADIVSLHTPLFPS 213 (343)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCGG------GTT-TCEE---CCHHHHHHHCSEEEECCCCCTT
T ss_pred ccCCCeEEEEecCHHHHHHHHHHhhCCC-EEEEECCChhhh------hhc-cccc---cCHHHHHhcCCEEEEcCCCCHH
Confidence 5689999999999999999999999998 599999987541 111 1122 25666778999999999853
Q ss_pred -ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 -APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 -~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+. ...++||++
T Consensus 214 t~~li~~~~l~~mk-------~gailIN~a 236 (343)
T 2yq5_A 214 TENMIGEKQLKEMK-------KSAYLINCA 236 (343)
T ss_dssp TTTCBCHHHHHHSC-------TTCEEEECS
T ss_pred HHHHhhHHHHhhCC-------CCcEEEECC
Confidence 4567777776653 236788876
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=3.2e-05 Score=78.96 Aligned_cols=88 Identities=18% Similarity=0.315 Sum_probs=64.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+.|++|+|||+|.||+.+++.|...|.+ |++++|++++.. +. . ...++.+.+.++|+||.+++..
T Consensus 161 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~~-V~~~dr~~~~~~------g~---~--~~~~l~ell~~aDvVil~vP~~~~ 228 (333)
T 3ba1_A 161 KFSGKRVGIIGLGRIGLAVAERAEAFDCP-ISYFSRSKKPNT------NY---T--YYGSVVELASNSDILVVACPLTPE 228 (333)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCC-EEEECSSCCTTC------CS---E--EESCHHHHHHTCSEEEECSCCCGG
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEECCCchhcc------Cc---e--ecCCHHHHHhcCCEEEEecCCChH
Confidence 57899999999999999999999999985 999999875431 21 1 2345666778999999999875
Q ss_pred -ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 -APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 -~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+. ...++|+++
T Consensus 229 t~~li~~~~l~~mk-------~gailIn~s 251 (333)
T 3ba1_A 229 TTHIINREVIDALG-------PKGVLINIG 251 (333)
T ss_dssp GTTCBCHHHHHHHC-------TTCEEEECS
T ss_pred HHHHhhHHHHhcCC-------CCCEEEECC
Confidence 3456555554332 125667765
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=7.1e-05 Score=75.68 Aligned_cols=73 Identities=19% Similarity=0.274 Sum_probs=56.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHHhCCcceeecccchHHh-hcCCCcEEEEcCCCCc
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCT-KMVVVNRSEERVAAICEELNGVEIIYKPLSEMLS-CAADADVVFTSTASEA 321 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~-~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~-~l~~aDVVI~AT~s~~ 321 (513)
..++|+|||+|.||..+++.|...|.. +|+++||++++++. +.+.|... . ...+..+ .+.++|+||.|++...
T Consensus 32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~-a~~~G~~~-~--~~~~~~~~~~~~aDvVilavp~~~ 106 (314)
T 3ggo_A 32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISK-AVDLGIID-E--GTTSIAKVEDFSPDFVMLSSPVRT 106 (314)
T ss_dssp SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH-HHHTTSCS-E--EESCTTGGGGGCCSEEEECSCGGG
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHHCCCcc-h--hcCCHHHHhhccCCEEEEeCCHHH
Confidence 347999999999999999999999973 69999999988755 44555311 1 1234455 6789999999998753
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=4.1e-05 Score=82.29 Aligned_cols=75 Identities=23% Similarity=0.300 Sum_probs=56.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-HhCCcceeecccchHHhhcC---CCcEEEEcCCCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE-ELNGVEIIYKPLSEMLSCAA---DADVVFTSTASE 320 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~-~~g~~~~~~~~~~~~~~~l~---~aDVVI~AT~s~ 320 (513)
...+|.|||+|.||..++..|...|.+ |+++||++++++.+.+ ..++..+ ....++.+.+. .+|+||.|++.+
T Consensus 9 ~~~~IgvIGlG~MG~~lA~~La~~G~~-V~v~dr~~~~~~~l~~~~~~~~gi--~~~~s~~e~v~~l~~aDvVil~Vp~~ 85 (497)
T 2p4q_A 9 MSADFGLIGLAVMGQNLILNAADHGFT-VCAYNRTQSKVDHFLANEAKGKSI--IGATSIEDFISKLKRPRKVMLLVKAG 85 (497)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSSHHHHHHHHTTTTTSSE--ECCSSHHHHHHTSCSSCEEEECCCSS
T ss_pred CCCCEEEEeeHHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHcccccCCCe--EEeCCHHHHHhcCCCCCEEEEEcCCh
Confidence 457899999999999999999999985 9999999999988876 3211111 22334444444 499999999997
Q ss_pred cc
Q 010322 321 AP 322 (513)
Q Consensus 321 ~~ 322 (513)
..
T Consensus 86 ~~ 87 (497)
T 2p4q_A 86 AP 87 (497)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.72 E-value=5e-05 Score=81.26 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=56.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc--ceeecccchHHhh---cCCCcEEEEcCCCCc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV--EIIYKPLSEMLSC---AADADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~--~~~~~~~~~~~~~---l~~aDVVI~AT~s~~ 321 (513)
++|.|||+|.||..++..|...|.. |+++||++++++.+.+.++.. ...+....+..+. ++.+|+||.|++++.
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~-V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~ 80 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFK-VAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGA 80 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChH
Confidence 3699999999999999999999985 999999999998888765410 0001122344443 346999999999974
Q ss_pred c
Q 010322 322 P 322 (513)
Q Consensus 322 ~ 322 (513)
.
T Consensus 81 ~ 81 (478)
T 1pgj_A 81 A 81 (478)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00016 Score=63.54 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=53.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc---hHHhh-cCCCcEEEEcCCCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS---EMLSC-AADADVVFTSTASE 320 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~---~~~~~-l~~aDVVI~AT~s~ 320 (513)
.+++|+|+|+|.+|+.+++.|...|.. |+++++++++.+.+.+. +. .....+.. .+.+. +.++|+||.||+..
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~-V~~id~~~~~~~~~~~~-~~-~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~ 81 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKK-VLAVDKSKEKIELLEDE-GF-DAVIADPTDESFYRSLDLEGVSAVLITGSDD 81 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCC-EEEEESCHHHHHHHHHT-TC-EEEECCTTCHHHHHHSCCTTCSEEEECCSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHC-CC-cEEECCCCCHHHHHhCCcccCCEEEEecCCH
Confidence 457899999999999999999999985 99999999998766543 32 11111111 22222 56899999999964
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.70 E-value=4e-05 Score=76.93 Aligned_cols=69 Identities=19% Similarity=0.309 Sum_probs=54.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
++|.|||+|.||..++..|...|.. |++++|++++++.+.+ .|. .+ ..+..+.+.++|+||.|++.+..
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~g~~-V~~~~~~~~~~~~~~~-~g~---~~--~~~~~~~~~~~DvVi~av~~~~~ 99 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKMGHT-VTVWNRTAEKCDLFIQ-EGA---RL--GRTPAEVVSTCDITFACVSDPKA 99 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCC-EEEECSSGGGGHHHHH-TTC---EE--CSCHHHHHHHCSEEEECCSSHHH
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHHHH-cCC---EE--cCCHHHHHhcCCEEEEeCCCHHH
Confidence 6899999999999999999999984 9999999998877665 332 22 23445556789999999997544
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=97.70 E-value=1.2e-05 Score=80.67 Aligned_cols=70 Identities=19% Similarity=0.423 Sum_probs=50.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.++|.+||.|.||..++++|...|+ +|+++||++++.+.+.+. |. . ..++..+.+..+|+||.|.+.+..
T Consensus 5 s~kIgfIGLG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~-G~---~--~~~s~~e~~~~~dvvi~~l~~~~~ 74 (297)
T 4gbj_A 5 SEKIAFLGLGNLGTPIAEILLEAGY-ELVVWNRTASKAEPLTKL-GA---T--VVENAIDAITPGGIVFSVLADDAA 74 (297)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTC-EEEEC-------CTTTTT-TC---E--ECSSGGGGCCTTCEEEECCSSHHH
T ss_pred CCcEEEEecHHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHc-CC---e--EeCCHHHHHhcCCceeeeccchhh
Confidence 4689999999999999999999998 499999999988766542 32 2 235666778899999999988654
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=6.4e-05 Score=71.54 Aligned_cols=68 Identities=21% Similarity=0.358 Sum_probs=52.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+++|+|||+|.||..++..|...|. +|++++|++++++.+.+. + +.+. +..+.+.++|+||.|++..
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~-g---~~~~---~~~~~~~~~DvVi~av~~~ 94 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGF-KVVVGSRNPKRTARLFPS-A---AQVT---FQEEAVSSPEVIFVAVFRE 94 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESSHHHHHHHSBT-T---SEEE---EHHHHTTSCSEEEECSCGG
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc-C---Ccee---cHHHHHhCCCEEEECCChH
Confidence 35789999999999999999999998 599999999887665432 2 2222 4556678999999999853
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=4.9e-05 Score=71.51 Aligned_cols=92 Identities=25% Similarity=0.361 Sum_probs=64.5
Q ss_pred eEEEEc-ccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC-----CcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 248 RMLVIG-AGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN-----GVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 248 ~VlVIG-aG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g-----~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
+|+|+| +|.||..++..|...|. +|++++|++++.+.+.+.++ . ++. ..++.+.+.++|+||.|++...
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~D~Vi~~~~~~~ 76 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRREEKAEAKAAEYRRIAGDA-SIT---GMKNEDAAEACDIAVLTIPWEH 76 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSHHHHHHHHHHHHHHHSSC-CEE---EEEHHHHHHHCSEEEECSCHHH
T ss_pred eEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhccccccC-CCC---hhhHHHHHhcCCEEEEeCChhh
Confidence 699999 99999999999999997 59999999998877776543 1 112 2455566778999999998543
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEeccCC
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDISVP 351 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDlavP 351 (513)
+ .+.+..+.+. .. ..+++|++.+
T Consensus 77 -~--~~~~~~l~~~---~~-~~~vi~~~~g 99 (212)
T 1jay_A 77 -A--IDTARDLKNI---LR-EKIVVSPLVP 99 (212)
T ss_dssp -H--HHHHHHTHHH---HT-TSEEEECCCC
T ss_pred -H--HHHHHHHHHH---cC-CCEEEEcCCC
Confidence 1 2333332110 11 3578888643
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.69 E-value=3.1e-05 Score=82.21 Aligned_cols=75 Identities=19% Similarity=0.217 Sum_probs=57.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcce---eecccchHHhhcCCCcEEEEcCCCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEI---IYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~---~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+++|+|+|+|.+|+.++..|...|. +|++++|+.++++++++.++.... .+.+.+++.+.+.++|+||+|++..
T Consensus 2 ~~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~ 79 (450)
T 1ff9_A 2 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT 79 (450)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence 36889999999999999999999897 599999999998887766542111 1122335556678999999999875
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00012 Score=74.15 Aligned_cols=94 Identities=19% Similarity=0.363 Sum_probs=64.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC-----CcceeecccchHHhhcCCCcEEEEcCCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN-----GVEIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g-----~~~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
...+|.|||+|.||..++..|...|. +|++++|++++++.+.+... +....+....+..+ +..+|+||.|+++
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~G~-~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~ 90 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHENGE-EVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPV 90 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCG
T ss_pred cCCcEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCH
Confidence 35789999999999999999999997 59999999999888876521 00000112234555 7899999999986
Q ss_pred CccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 320 EAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 320 ~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
. .+ .+.+..+.+ ...++|+++
T Consensus 91 ~-~~--~~v~~~l~~------~~~~vv~~~ 111 (335)
T 1z82_A 91 Q-YI--REHLLRLPV------KPSMVLNLS 111 (335)
T ss_dssp G-GH--HHHHTTCSS------CCSEEEECC
T ss_pred H-HH--HHHHHHhCc------CCCEEEEEe
Confidence 3 22 344444321 124677775
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.66 E-value=4e-05 Score=77.54 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=51.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH---HHHHHHHHHhCCcceeecccc-hHHhhcCCCcEEEEcCCCCc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE---ERVAAICEELNGVEIIYKPLS-EMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~---~ra~~la~~~g~~~~~~~~~~-~~~~~l~~aDVVI~AT~s~~ 321 (513)
.++|.|||+|.||..++..|...|..+|+++||++ +++++..+.+..... .. +..+.+.++|+||.|++.+.
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~----~~~s~~e~~~~aDvVi~avp~~~ 99 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV----EPLDDVAGIACADVVLSLVVGAA 99 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC----EEESSGGGGGGCSEEEECCCGGG
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC----CCCCHHHHHhcCCEEEEecCCHH
Confidence 36899999999999999999999933699999997 222222222210011 23 44566778999999998865
Q ss_pred c
Q 010322 322 P 322 (513)
Q Consensus 322 ~ 322 (513)
.
T Consensus 100 ~ 100 (317)
T 4ezb_A 100 T 100 (317)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00012 Score=69.49 Aligned_cols=73 Identities=16% Similarity=0.333 Sum_probs=55.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecc---cchHHhh-cCCCcEEEEcCCCCc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKP---LSEMLSC-AADADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~---~~~~~~~-l~~aDVVI~AT~s~~ 321 (513)
++|+|+|+|.+|..+++.|...|.. |+++++++++++.+++.++.. +..-+ .+.+.++ +.++|+||.||+...
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~-v~vid~~~~~~~~l~~~~~~~-~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~ 77 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYG-VVIINKDRELCEEFAKKLKAT-IIHGDGSHKEILRDAEVSKNDVVVILTPRDE 77 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCC-EEEEESCHHHHHHHHHHSSSE-EEESCTTSHHHHHHHTCCTTCEEEECCSCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEECCHHHHHHHHHHcCCe-EEEcCCCCHHHHHhcCcccCCEEEEecCCcH
Confidence 3699999999999999999999985 999999999998887765431 11111 1223333 789999999999864
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=8.4e-05 Score=75.79 Aligned_cols=90 Identities=14% Similarity=0.271 Sum_probs=65.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc-
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA- 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~- 321 (513)
.+.|++|+|||.|.||+.+++.|+..|+ +|++++|++.+. + ..+ . .+. +++.+.+..+|+|+.+++...
T Consensus 143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~--~-~~~-~---~~~--~~l~ell~~aDvV~l~~p~~~~ 212 (333)
T 1j4a_A 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPE--L-EKK-G---YYV--DSLDDLYKQADVISLHVPDVPA 212 (333)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHH--H-HHT-T---CBC--SCHHHHHHHCSEEEECSCCCGG
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcchh--H-Hhh-C---eec--CCHHHHHhhCCEEEEcCCCcHH
Confidence 5689999999999999999999999998 499999987654 2 222 1 111 245666778999999998653
Q ss_pred --cCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 322 --PLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 322 --~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
.+++.+.+..+. ...++|+++
T Consensus 213 t~~li~~~~l~~mk-------~ga~lIn~a 235 (333)
T 1j4a_A 213 NVHMINDESIAKMK-------QDVVIVNVS 235 (333)
T ss_dssp GTTCBSHHHHHHSC-------TTEEEEECS
T ss_pred HHHHHhHHHHhhCC-------CCcEEEECC
Confidence 355555555542 236788876
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=5.3e-05 Score=76.62 Aligned_cols=69 Identities=19% Similarity=0.280 Sum_probs=52.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC---CeEEEEeCCHH--HHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGC---TKMVVVNRSEE--RVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~---~~V~v~nRs~~--ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
...+|.|||+|.||..++..|...|. .+|+++||+++ +++.+. +.|. .+ ..+..+.+..+|+||.|++.
T Consensus 21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~-~~G~---~~--~~~~~e~~~~aDvVilav~~ 94 (322)
T 2izz_A 21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALR-KMGV---KL--TPHNKETVQHSDVLFLAVKP 94 (322)
T ss_dssp -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHH-HHTC---EE--ESCHHHHHHHCSEEEECSCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHH-HcCC---EE--eCChHHHhccCCEEEEEeCH
Confidence 34689999999999999999999983 46999999985 776665 4442 22 13344556689999999983
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00013 Score=71.88 Aligned_cols=71 Identities=20% Similarity=0.304 Sum_probs=54.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC-CCcEEEEcCCCCc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCT-KMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA-DADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~-~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~-~aDVVI~AT~s~~ 321 (513)
++|+|||+|.||..++..|...|.. +|++++|++++.+. +.++|... . ...+..+.+. ++|+||.|++...
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~-~~~~g~~~-~--~~~~~~~~~~~~aDvVilavp~~~ 74 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISK-AVDLGIID-E--GTTSIAKVEDFSPDFVMLSSPVRT 74 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH-HHHTTSCS-E--EESCGGGGGGTCCSEEEECSCHHH
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHH-HHHCCCcc-c--ccCCHHHHhcCCCCEEEEcCCHHH
Confidence 4799999999999999999998862 59999999988855 44555311 1 1234555677 8999999998753
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.61 E-value=4.8e-05 Score=78.25 Aligned_cols=74 Identities=12% Similarity=0.259 Sum_probs=53.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
..++|+|+|||.+|+.++++|... .+|++++++.++++.+.+......+.+.+.+++.+.+.++|+||+|+|..
T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~~~--~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~ 88 (365)
T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLKDE--FDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF 88 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTT--SEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred CccEEEEECCCHHHHHHHHHHhcC--CCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence 345799999999999999999653 36999999998886654322111111223345677789999999999754
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=97.61 E-value=4.7e-05 Score=77.63 Aligned_cols=89 Identities=12% Similarity=0.244 Sum_probs=66.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+.|++|+|||.|.||+.+++.|...|++ |+++||+..+. + ... .. +.++.+.+..+|+|+.+++..
T Consensus 143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~~~~~~--~-~~~----~~---~~~l~ell~~aDvV~~~~p~t~~ 211 (331)
T 1xdw_A 143 EVRNCTVGVVGLGRIGRVAAQIFHGMGAT-VIGEDVFEIKG--I-EDY----CT---QVSLDEVLEKSDIITIHAPYIKE 211 (331)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCCS--C-TTT----CE---ECCHHHHHHHCSEEEECCCCCTT
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCCccHH--H-Hhc----cc---cCCHHHHHhhCCEEEEecCCchH
Confidence 56899999999999999999999999985 99999987543 1 111 12 235566677899999997764
Q ss_pred -ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 -APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 -~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+. ...++||++
T Consensus 212 t~~li~~~~l~~mk-------~ga~lin~s 234 (331)
T 1xdw_A 212 NGAVVTRDFLKKMK-------DGAILVNCA 234 (331)
T ss_dssp TCCSBCHHHHHTSC-------TTEEEEECS
T ss_pred HHHHhCHHHHhhCC-------CCcEEEECC
Confidence 4567766666543 237888887
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=97.59 E-value=5.7e-05 Score=73.94 Aligned_cols=78 Identities=21% Similarity=0.316 Sum_probs=56.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-------------------HHHHHHHHHhC----Ccceeecc-
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-------------------ERVAAICEELN----GVEIIYKP- 299 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-------------------~ra~~la~~~g----~~~~~~~~- 299 (513)
+.+.+|+|+|+|++|..++++|...|+.+|+++|++. .|++.+++.+. ...+...+
T Consensus 26 l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~ 105 (251)
T 1zud_1 26 LLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQ 105 (251)
T ss_dssp HHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred HhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEec
Confidence 3578999999999999999999999999999995532 56766666553 21222211
Q ss_pred ---cchHHhhcCCCcEEEEcCCCCc
Q 010322 300 ---LSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 300 ---~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.++..+.+.++|+||+||....
T Consensus 106 ~~~~~~~~~~~~~~DvVi~~~d~~~ 130 (251)
T 1zud_1 106 RLTGEALKDAVARADVVLDCTDNMA 130 (251)
T ss_dssp CCCHHHHHHHHHHCSEEEECCSSHH
T ss_pred cCCHHHHHHHHhcCCEEEECCCCHH
Confidence 1244556778999999998654
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00014 Score=78.63 Aligned_cols=91 Identities=19% Similarity=0.187 Sum_probs=66.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+.|++|+|||.|.||+.+++.|+..|. +|+++||+... +.+..+|. ... ++.+.+..+|+|+.|++..
T Consensus 139 ~l~g~~vgIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g~---~~~---~l~e~~~~aDvV~l~~P~~~~ 209 (529)
T 1ygy_A 139 EIFGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSP--ARAAQLGI---ELL---SLDDLLARADFISVHLPKTPE 209 (529)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCH--HHHHHHTC---EEC---CHHHHHHHCSEEEECCCCSTT
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEECCCCCh--hHHHhcCc---EEc---CHHHHHhcCCEEEECCCCchH
Confidence 5789999999999999999999999998 59999998643 22445553 222 4556677899999999875
Q ss_pred -ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 -APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 -~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+. ...+++|++
T Consensus 210 t~~~i~~~~~~~~k-------~g~ilin~a 232 (529)
T 1ygy_A 210 TAGLIDKEALAKTK-------PGVIIVNAA 232 (529)
T ss_dssp TTTCBCHHHHTTSC-------TTEEEEECS
T ss_pred HHHHhCHHHHhCCC-------CCCEEEECC
Confidence 3456554444432 236778876
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=6.8e-05 Score=69.75 Aligned_cols=125 Identities=15% Similarity=0.150 Sum_probs=70.5
Q ss_pred HhhCccccccccccC-CCchHHHHHHHHHHhhCCCCCCCCCeEEEEc-ccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 010322 208 ISVGKRVRTETNIAA-GAVSVSSAAVELALMKLPESSHATARMLVIG-AGKMGKLVIKHLVAKGCTKMVVVNRSEERVAA 285 (513)
Q Consensus 208 i~v~k~Vr~et~i~~-~~~Sva~~Av~la~~~~~~~~l~g~~VlVIG-aG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~ 285 (513)
+.+|+.+..+..... .+..++++++.. .. ...+|++|+|+| +|++|..+++.++..|+ +|++++|++++.+
T Consensus 5 ~~~P~~~~~~~aa~~~~~~~ta~~~l~~---~~--~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~- 77 (198)
T 1pqw_A 5 VPIPDTLADNEAATFGVAYLTAWHSLCE---VG--RLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKRE- 77 (198)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHT---TS--CCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHH-
T ss_pred eECCCCCCHHHHHHhhHHHHHHHHHHHH---Hh--CCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHH-
Confidence 344555554443322 355566666532 11 234789999999 59999999999999998 5999999988874
Q ss_pred HHHHhCCcceeeccc-ch----HHhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 286 ICEELNGVEIIYKPL-SE----MLSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 286 la~~~g~~~~~~~~~-~~----~~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.+.++|.. ..+... .+ +.+.. .++|+||++++. ..+ ...++.+. ++|+.+.+..
T Consensus 78 ~~~~~g~~-~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~-~~~--~~~~~~l~-----~~G~~v~~g~ 138 (198)
T 1pqw_A 78 MLSRLGVE-YVGDSRSVDFADEILELTDGYGVDVVLNSLAG-EAI--QRGVQILA-----PGGRFIELGK 138 (198)
T ss_dssp HHHTTCCS-EEEETTCSTHHHHHHHHTTTCCEEEEEECCCT-HHH--HHHHHTEE-----EEEEEEECSC
T ss_pred HHHHcCCC-EEeeCCcHHHHHHHHHHhCCCCCeEEEECCch-HHH--HHHHHHhc-----cCCEEEEEcC
Confidence 45566642 122111 12 22222 269999999873 222 33444332 3565666554
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=9.8e-05 Score=79.02 Aligned_cols=73 Identities=16% Similarity=0.278 Sum_probs=55.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-HhCCcceeecccchHHhh---cCCCcEEEEcCCCCcc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE-ELNGVEIIYKPLSEMLSC---AADADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~-~~g~~~~~~~~~~~~~~~---l~~aDVVI~AT~s~~~ 322 (513)
.+|.|||+|.||..++..|...|.. |+++||++++++.+.+ +..+..+. ...++.+. +..+|+||.|++++..
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~-V~v~dr~~~~~~~l~~~~~~g~gi~--~~~~~~e~v~~l~~aDvVilaVp~~~~ 79 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFV-VCAFNRTVSKVDDFLANEAKGTKVL--GAHSLEEMVSKLKKPRRIILLVKAGQA 79 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSTHHHHHHHHTTTTTSSCE--ECSSHHHHHHHBCSSCEEEECSCTTHH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHhccccCCCeE--EeCCHHHHHhhccCCCEEEEeCCChHH
Confidence 4799999999999999999999985 9999999999988776 31111112 22334443 4689999999999744
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=9.4e-05 Score=73.91 Aligned_cols=75 Identities=21% Similarity=0.269 Sum_probs=54.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH----------hCCcc-------------eeecccch
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEE----------LNGVE-------------IIYKPLSE 302 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~----------~g~~~-------------~~~~~~~~ 302 (513)
-++|.|||+|.||..++..|...|. +|+++||++++++...+. .|... ..+....+
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~ 93 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD 93 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecC
Confidence 4689999999999999999999998 599999999887553221 11000 00112345
Q ss_pred HHhhcCCCcEEEEcCCCCc
Q 010322 303 MLSCAADADVVFTSTASEA 321 (513)
Q Consensus 303 ~~~~l~~aDVVI~AT~s~~ 321 (513)
..+.+.++|+||.|++...
T Consensus 94 ~~~~~~~aD~Vi~avp~~~ 112 (302)
T 1f0y_A 94 AASVVHSTDLVVEAIVENL 112 (302)
T ss_dssp HHHHTTSCSEEEECCCSCH
T ss_pred HHHhhcCCCEEEEcCcCcH
Confidence 5557889999999998754
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00029 Score=62.15 Aligned_cols=73 Identities=21% Similarity=0.262 Sum_probs=54.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc---hHHh-hcCCCcEEEEcCCCCc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS---EMLS-CAADADVVFTSTASEA 321 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~---~~~~-~l~~aDVVI~AT~s~~ 321 (513)
.++|+|+|+|.+|..+++.|...|.. |+++++++++.+.+.+ .|. ....-+.. .+.+ .+.++|+||.||+...
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~-v~vid~~~~~~~~~~~-~g~-~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~ 83 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIP-LVVIETSRTRVDELRE-RGV-RAVLGNAANEEIMQLAHLECAKWLILTIPNGY 83 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCC-EEEEESCHHHHHHHHH-TTC-EEEESCTTSHHHHHHTTGGGCSEEEECCSCHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHH-cCC-CEEECCCCCHHHHHhcCcccCCEEEEECCChH
Confidence 46799999999999999999999985 9999999999876654 442 11111111 1222 2568999999999864
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.58 E-value=7.7e-05 Score=76.11 Aligned_cols=70 Identities=26% Similarity=0.252 Sum_probs=55.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.+++|+|||+|.||..++..|...|. +|++++|+.++..+.+.+.|. .+. +..+.+.++|+||.|++...
T Consensus 15 ~~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~~~~~~~a~~~G~---~~~---~~~e~~~~aDvVilavp~~~ 84 (338)
T 1np3_A 15 QGKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSGSATVAKAEAHGL---KVA---DVKTAVAAADVVMILTPDEF 84 (338)
T ss_dssp HTSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTTCHHHHHHHHTTC---EEE---CHHHHHHTCSEEEECSCHHH
T ss_pred cCCEEEEECchHHHHHHHHHHHHCcC-EEEEEECChHHHHHHHHHCCC---EEc---cHHHHHhcCCEEEEeCCcHH
Confidence 56789999999999999999999998 499999998775566766653 222 44456678999999998753
|
| >3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00025 Score=74.41 Aligned_cols=254 Identities=15% Similarity=0.167 Sum_probs=138.3
Q ss_pred CCCCHHHHhhhcC--CCCChHHHHHHHhccCCCcceEEeeecCeeEEEEEeccccccHHHHHHHHHH---hcCCChhhhh
Q 010322 73 HTAPVEMREKLAI--PEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSK---TSGIPVAELC 147 (513)
Q Consensus 73 k~apv~~RE~~a~--~~~~~~~~l~~l~~~~~i~e~viLsTCNR~EiY~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~ 147 (513)
-+.|+.-++-|++ ++ -..+.+.++.+.+ +.+.--|++.-.+-++++... -.. |.+ ..|++..+-.
T Consensus 51 ~~~~~~~~~dLslaYTP-gVa~~c~~i~~dp---~~~~~yt~kgn~VaVVTDG~a-ILG-----LGDiG~~agmpImeGK 120 (487)
T 3nv9_A 51 PKCTLAGFNWFNAYYTP-GVSRISTNIRDNN---DSSLFYSLRGNFVGVVSDSTR-VLG-----DGDVTPPGGLGVMEGK 120 (487)
T ss_dssp ECSCCSSGGGHHHHSTT-THHHHHHHHHHCG---GGHHHHSGGGGEEEEEECSSS-BGG-----GBCCCGGGGHHHHHHH
T ss_pred ecCCCCCHHHCeeeeCc-chHHHHHHHHhCh---HHHhhhcccCCEEEEEEcCce-eee-----ccccccccCCchhhhH
Confidence 4677777777765 33 3445666665543 344445555555666654321 000 000 0122332333
Q ss_pred hHHHHh-cCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchh-hHHHHHHHhhCcccccccccc----
Q 010322 148 EHRFLL-YNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNI-SGLFKHAISVGKRVRTETNIA---- 221 (513)
Q Consensus 148 ~~~~~~-~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L-~~lf~~ai~v~k~Vr~et~i~---- 221 (513)
-.+|.. -|.+++=-.+.++. ++..--.++++.-|+. .....|.+ .+ |..-.+|+.+=++.|.+..|.
T Consensus 121 l~Lyk~~aGId~lPI~LD~gt--~~~~~d~defve~v~~---~~P~fG~I--nlEDf~ap~af~il~ryr~~~~ipvFnD 193 (487)
T 3nv9_A 121 ALLMKYLGGIDAVPICIDSKN--KEGKNDPDAVIEFVQR---IQHTFGAI--NLEDISQPNCYKILDVLRESCDIPVWHD 193 (487)
T ss_dssp HHHHHHHHCCEEEEEECCCBC--TTSCBCHHHHHHHHHH---HGGGCSEE--EECSCCTTHHHHHHHHHHHHCSSCEEET
T ss_pred HHHHHhcCCCceeeeEEeCCC--ccccCCHHHHHHHHHH---hCCCCCee--cHhhcCCchHHHHHHHHHhhccCCcccc
Confidence 446644 47776666666651 1110001333322221 22222221 12 112233444444444432221
Q ss_pred --CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCC--CeEEEEeCC----HHHH----------
Q 010322 222 --AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGC--TKMVVVNRS----EERV---------- 283 (513)
Q Consensus 222 --~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~--~~V~v~nRs----~~ra---------- 283 (513)
+++.+|..+++--|-+..+ ..+.+.+|++.|||..|..+++.|...|+ ++|+++|+. .+|-
T Consensus 194 D~qGTA~V~lAgllnAlki~g-k~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~ 272 (487)
T 3nv9_A 194 DQQGTASVTLAGLLNALKLVK-KDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGSLHNGREDIKKDTRFYR 272 (487)
T ss_dssp TTHHHHHHHHHHHHHHHHHHT-CCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTEECCTTCHHHHHCGGGHH
T ss_pred ccchHHHHHHHHHHHHHHHhC-CChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEeccccccCCcchhhhhcccHH
Confidence 2445555555433333333 56788999999999999999999999999 789999984 2331
Q ss_pred -HHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC-CCCc
Q 010322 284 -AAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR-NVGS 356 (513)
Q Consensus 284 -~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr-didp 356 (513)
..+++.... ....++.+++.++||.|-++..+..+|+++.++.+. .+.+++-+|.|- .+.|
T Consensus 273 k~~~A~~~n~-----~~~~~L~eav~~adVlIG~S~~~pg~ft~e~V~~Ma-------~~PIIFaLSNPtpEi~p 335 (487)
T 3nv9_A 273 KWEICETTNP-----SKFGSIAEACVGADVLISLSTPGPGVVKAEWIKSMG-------EKPIVFCCANPVPEIYP 335 (487)
T ss_dssp HHHHHHHSCT-----TCCCSHHHHHTTCSEEEECCCSSCCCCCHHHHHTSC-------SSCEEEECCSSSCSSCH
T ss_pred HHHHHHhccc-----ccCCCHHHHHhcCCEEEEecccCCCCCCHHHHHhhc-------CCCEEEECCCCCccCCH
Confidence 122332211 123468888999999998874433578999998874 347888999884 4555
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00018 Score=70.66 Aligned_cols=68 Identities=19% Similarity=0.283 Sum_probs=52.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+|+|||+|.||..++..|...|. +|++++|++++++.+. +.+... . ...+..+. .++|+||.|++..
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~-~~g~~~-~--~~~~~~~~-~~~D~vi~av~~~ 68 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAV-ERQLVD-E--AGQDLSLL-QTAKIIFLCTPIQ 68 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH-HTTSCS-E--EESCGGGG-TTCSEEEECSCHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH-hCCCCc-c--ccCCHHHh-CCCCEEEEECCHH
Confidence 379999999999999999999998 6999999999887664 444211 1 12344555 7899999999864
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00019 Score=72.09 Aligned_cols=73 Identities=25% Similarity=0.378 Sum_probs=56.4
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCC------cceeecccchHHhhcCCCcEEEEcCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNG------VEIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~------~~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
++|+|||+|.||..++..|...|. .+|++++|++++++.++..++. ....+. ..+. +.+.++|+||.|++.
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~d~-~~~~~aDvViiav~~ 79 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV-INDW-AALADADVVISTLGN 79 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEE-ESCG-GGGTTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEE-eCCH-HHhCCCCEEEEecCC
Confidence 479999999999999999998884 5799999999988877765431 011221 2344 567899999999998
Q ss_pred Cc
Q 010322 320 EA 321 (513)
Q Consensus 320 ~~ 321 (513)
+.
T Consensus 80 ~~ 81 (309)
T 1hyh_A 80 IK 81 (309)
T ss_dssp GG
T ss_pred cc
Confidence 76
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.55 E-value=6.7e-05 Score=74.47 Aligned_cols=69 Identities=28% Similarity=0.384 Sum_probs=54.8
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.+|+|||+|.||..++..|...|. +|++++|++++++.+.+. |. . ...+..+.+.++|+||.|++.+..
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-g~---~--~~~~~~~~~~~~D~vi~~v~~~~~ 74 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAA-GA---E--TASTAKAIAEQCDVIITMLPNSPH 74 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT-TC---E--ECSSHHHHHHHCSEEEECCSSHHH
T ss_pred ceEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHC-CC---e--ecCCHHHHHhCCCEEEEECCCHHH
Confidence 489999999999999999999997 599999999988776654 32 2 223455556689999999997643
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00036 Score=62.27 Aligned_cols=75 Identities=15% Similarity=0.260 Sum_probs=54.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC-HHHHHHHHHHhC-Ccceeecc---cchHHhh-cCCCcEEEEcCCC
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS-EERVAAICEELN-GVEIIYKP---LSEMLSC-AADADVVFTSTAS 319 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs-~~ra~~la~~~g-~~~~~~~~---~~~~~~~-l~~aDVVI~AT~s 319 (513)
.++|+|+|+|.+|+.+++.|...|.. |++++++ +++++.+...+. +..+..-+ .+.+.++ +.++|+||.||+.
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~-V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~ 81 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQN-VTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN 81 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCC-EEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCC
Confidence 56899999999999999999999985 9999997 576666665442 11111111 1223343 7899999999988
Q ss_pred Cc
Q 010322 320 EA 321 (513)
Q Consensus 320 ~~ 321 (513)
..
T Consensus 82 d~ 83 (153)
T 1id1_A 82 DA 83 (153)
T ss_dssp HH
T ss_pred hH
Confidence 64
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=5.1e-05 Score=75.19 Aligned_cols=68 Identities=19% Similarity=0.271 Sum_probs=53.2
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
+|.|||+|.||..++..|...|. +|++++|++++++.+.+. + +.+ ..+..+.+..+|+||.|++.+..
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-g---~~~--~~~~~~~~~~~Dvvi~~vp~~~~ 69 (296)
T 2gf2_A 2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVFPDACKEFQDA-G---EQV--VSSPADVAEKADRIITMLPTSIN 69 (296)
T ss_dssp CEEEECCSTTHHHHHHHHHHTTC-CEEEECSSTHHHHHHHTT-T---CEE--CSSHHHHHHHCSEEEECCSSHHH
T ss_pred eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc-C---Cee--cCCHHHHHhcCCEEEEeCCCHHH
Confidence 69999999999999999999998 499999999988776543 3 122 23445556689999999977643
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.51 E-value=8.8e-05 Score=77.76 Aligned_cols=89 Identities=16% Similarity=0.201 Sum_probs=63.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+.|++|+|||.|.||+.+++.|...|. +|+++||++... .+. .....++.+.++.+|+|+.+++..
T Consensus 153 el~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~yd~~~~~~------~~~----~~~~~sl~ell~~aDvV~lhvPlt~~ 221 (416)
T 3k5p_A 153 EVRGKTLGIVGYGNIGSQVGNLAESLGM-TVRYYDTSDKLQ------YGN----VKPAASLDELLKTSDVVSLHVPSSKS 221 (416)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECTTCCCC------BTT----BEECSSHHHHHHHCSEEEECCCC---
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCcchhc------ccC----cEecCCHHHHHhhCCEEEEeCCCCHH
Confidence 5789999999999999999999999998 599999974211 111 112345667778899999998874
Q ss_pred -ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 -APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 -~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+.+ ..++|+.+
T Consensus 222 T~~li~~~~l~~mk~-------gailIN~a 244 (416)
T 3k5p_A 222 TSKLITEAKLRKMKK-------GAFLINNA 244 (416)
T ss_dssp --CCBCHHHHHHSCT-------TEEEEECS
T ss_pred HhhhcCHHHHhhCCC-------CcEEEECC
Confidence 35677666665432 25666654
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=97.51 E-value=6.6e-05 Score=74.59 Aligned_cols=70 Identities=26% Similarity=0.380 Sum_probs=55.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
..+|+|||+|.||..++..|...|. +|++++|++++++.+.+. +. . ...+..+.+.++|+||.|++.+..
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-g~---~--~~~~~~~~~~~~D~vi~~vp~~~~ 73 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLMEANVAAVVAQ-GA---Q--ACENNQKVAAASDIIFTSLPNAGI 73 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHTT-TC---E--ECSSHHHHHHHCSEEEECCSSHHH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHC-CC---e--ecCCHHHHHhCCCEEEEECCCHHH
Confidence 3689999999999999999999997 599999999988776653 31 2 224455556689999999987653
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=8.3e-05 Score=75.87 Aligned_cols=91 Identities=11% Similarity=0.108 Sum_probs=67.2
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
..+.|++|+|||.|.||+.+++.|+..|++ |++++|+..+. +... .. +.++.+.+..+|+|+.+++...
T Consensus 141 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~~~~~~---~~~~----~~---~~~l~ell~~aDvV~~~~P~~~ 209 (333)
T 1dxy_A 141 KELGQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDPYPMKG---DHPD----FD---YVSLEDLFKQSDVIDLHVPGIE 209 (333)
T ss_dssp CCGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCSS---CCTT----CE---ECCHHHHHHHCSEEEECCCCCG
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCCcchh---hHhc----cc---cCCHHHHHhcCCEEEEcCCCch
Confidence 357899999999999999999999999985 99999986542 1111 12 2355666778999999998754
Q ss_pred ---cCCChhhhhcCCchhhhcCCcEEEEeccC
Q 010322 322 ---PLFLKDHVQDLPPVEAAVGGLRLFIDISV 350 (513)
Q Consensus 322 ---~vi~~~~l~~~~~~~~~~~g~~viiDlav 350 (513)
.+++.+.+..+. ...++|+++-
T Consensus 210 ~t~~li~~~~l~~mk-------~ga~lIn~sr 234 (333)
T 1dxy_A 210 QNTHIINEAAFNLMK-------PGAIVINTAR 234 (333)
T ss_dssp GGTTSBCHHHHHHSC-------TTEEEEECSC
T ss_pred hHHHHhCHHHHhhCC-------CCcEEEECCC
Confidence 456666666543 2378899873
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00016 Score=73.48 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=56.4
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC----c--c--eee-cccchHHhhcCCCcEEEEcC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG----V--E--IIY-KPLSEMLSCAADADVVFTST 317 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~----~--~--~~~-~~~~~~~~~l~~aDVVI~AT 317 (513)
.+|+|||+|.||..++..|...|. +|++++|++++++.+.+..+. . . ..+ ....+..+.+.++|+||.|+
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v 83 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV 83 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeC
Confidence 689999999999999999999997 599999999998877765321 0 0 000 12345556678999999999
Q ss_pred CCCc
Q 010322 318 ASEA 321 (513)
Q Consensus 318 ~s~~ 321 (513)
++..
T Consensus 84 ~~~~ 87 (359)
T 1bg6_A 84 PAIH 87 (359)
T ss_dssp CGGG
T ss_pred CchH
Confidence 8764
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0002 Score=70.89 Aligned_cols=67 Identities=16% Similarity=0.254 Sum_probs=53.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
++|+|||+ |.||..++..|...|. +|++++|++++++.+.+ +|. .. .+..+.+.++|+||.|++...
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~-~g~---~~---~~~~~~~~~aDvVi~av~~~~ 79 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAPEGRDRLQG-MGI---PL---TDGDGWIDEADVVVLALPDNI 79 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSHHHHHHHHH-TTC---CC---CCSSGGGGTCSEEEECSCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHh-cCC---Cc---CCHHHHhcCCCEEEEcCCchH
Confidence 58999999 9999999999999997 69999999998877665 442 22 133455678999999998653
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=8.5e-05 Score=75.81 Aligned_cols=79 Identities=19% Similarity=0.341 Sum_probs=57.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-------------------HHHHHHHHHhC----Ccceeecc-
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-------------------ERVAAICEELN----GVEIIYKP- 299 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-------------------~ra~~la~~~g----~~~~~~~~- 299 (513)
+.+.+|+|+|+|++|..++++|...|+.+|+++|++. .|++.+++.+. ...+...+
T Consensus 32 L~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~~ 111 (340)
T 3rui_A 32 IKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKL 111 (340)
T ss_dssp HHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECC
T ss_pred HhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEec
Confidence 3578999999999999999999999999999998743 35555555442 22222211
Q ss_pred ------------------cchHHhhcCCCcEEEEcCCCCcc
Q 010322 300 ------------------LSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 300 ------------------~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.+++.+.+.++|+||+||-+...
T Consensus 112 ~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~t 152 (340)
T 3rui_A 112 SIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRES 152 (340)
T ss_dssp CCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTGG
T ss_pred cccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHHH
Confidence 12345567889999999988653
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00029 Score=69.90 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=52.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceee-----------cccchHHhhcCCCcEEEE
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIY-----------KPLSEMLSCAADADVVFT 315 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~-----------~~~~~~~~~l~~aDVVI~ 315 (513)
.+|+|||+|.||..++..|...|. +|++++|++++.+.+.+. +. .... ....+..+.+.++|+||.
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWPAHIEAIRKN-GL-IADFNGEEVVANLPIFSPEEIDHQNEQVDLIIA 80 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHH-CE-EEEETTEEEEECCCEECGGGCCTTSCCCSEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhC-CE-EEEeCCCeeEecceeecchhhcccCCCCCEEEE
Confidence 589999999999999999999997 699999999988777654 31 1110 011122223448999999
Q ss_pred cCCCC
Q 010322 316 STASE 320 (513)
Q Consensus 316 AT~s~ 320 (513)
|++..
T Consensus 81 ~v~~~ 85 (316)
T 2ew2_A 81 LTKAQ 85 (316)
T ss_dssp CSCHH
T ss_pred Eeccc
Confidence 99864
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00021 Score=73.53 Aligned_cols=74 Identities=15% Similarity=0.193 Sum_probs=56.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh------CCcce--eecccchHHhhcCCCcEEEEcC
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL------NGVEI--IYKPLSEMLSCAADADVVFTST 317 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~------g~~~~--~~~~~~~~~~~l~~aDVVI~AT 317 (513)
.++|.|||+|.||..++..|...|.. |++++|++++++.+.+.. ++... .+....++.+++.++|+||.|+
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~-V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaV 107 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQK-VRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVV 107 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCC-EEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECC
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECC
Confidence 46899999999999999999999974 999999999987777642 11000 0112346667788999999999
Q ss_pred CCC
Q 010322 318 ASE 320 (513)
Q Consensus 318 ~s~ 320 (513)
++.
T Consensus 108 p~~ 110 (356)
T 3k96_A 108 PSF 110 (356)
T ss_dssp CHH
T ss_pred CHH
Confidence 874
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00033 Score=66.62 Aligned_cols=77 Identities=25% Similarity=0.335 Sum_probs=56.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC-cceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG-VEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~-~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+.+++|+|.|+ |.+|+.+++.|...|+ +|++++|++++...+... +. ..+..+..+++.+.+.++|+||.+.+..
T Consensus 18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~ 95 (236)
T 3e8x_A 18 YFQGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRER-GASDIVVANLEEDFSHAFASIDAVVFAAGSG 95 (236)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHT-TCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred CcCCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHhC-CCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence 578999999999 9999999999999998 599999999888766542 21 1111111145566778999999998865
Q ss_pred c
Q 010322 321 A 321 (513)
Q Consensus 321 ~ 321 (513)
.
T Consensus 96 ~ 96 (236)
T 3e8x_A 96 P 96 (236)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00012 Score=76.46 Aligned_cols=74 Identities=18% Similarity=0.403 Sum_probs=56.2
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHhCC-----cce-e--ecccchHHhhcCC--CcEEE
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGC--TKMVVVNRSEERVAAICEELNG-----VEI-I--YKPLSEMLSCAAD--ADVVF 314 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~--~~V~v~nRs~~ra~~la~~~g~-----~~~-~--~~~~~~~~~~l~~--aDVVI 314 (513)
++|+|+|+|.+|+.+++.|...|. .+|++++|+.++++++++.++. ... . +...+++.+.+.+ +|+||
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi 81 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL 81 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence 579999999999999999999884 4799999999999999887642 111 1 1122345555655 89999
Q ss_pred EcCCCC
Q 010322 315 TSTASE 320 (513)
Q Consensus 315 ~AT~s~ 320 (513)
+|++..
T Consensus 82 n~ag~~ 87 (405)
T 4ina_A 82 NIALPY 87 (405)
T ss_dssp ECSCGG
T ss_pred ECCCcc
Confidence 998753
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00056 Score=71.03 Aligned_cols=110 Identities=21% Similarity=0.284 Sum_probs=78.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCC--eEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCT--KMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~--~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
...+|+|||+ |..|+.++..+...|+. .|++++++.... |+ . ++ .+..+|+||+|.-.+.
T Consensus 213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~-------g~---~---~~----~i~~aDivIn~vlig~ 275 (394)
T 2qrj_A 213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR-------GG---P---FD----EIPQADIFINCIYLSK 275 (394)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT-------CS---C---CT----HHHHSSEEEECCCCCS
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc-------CC---c---hh----hHhhCCEEEECcCcCC
Confidence 5678999999 99999999999999984 599999875211 32 1 22 2458999999986521
Q ss_pred ---cCCChhhhhcCCchhhhcCCcEEEEeccCCC--CCCc------------ccccccC-----eEEEccCCHHHHHH
Q 010322 322 ---PLFLKDHVQDLPPVEAAVGGLRLFIDISVPR--NVGS------------CVADVET-----ARVYNVDDLKEVVA 377 (513)
Q Consensus 322 ---~vi~~~~l~~~~~~~~~~~g~~viiDlavPr--didp------------~v~~l~g-----v~ly~iDdl~~v~~ 377 (513)
.+++.++++.+.+ ...++||++... .+++ .+....| +.+|.+|+++..+.
T Consensus 276 ~aP~Lvt~e~v~~m~k------~gsVIVDVA~D~GG~~et~~f~~~~Tt~~~P~~~~~g~~~~~V~~~~v~nlP~~lP 347 (394)
T 2qrj_A 276 PIAPFTNMEKLNNPNR------RLRTVVDVSADTTNPHNPIPIYTVATVFNKPTVLVPTTAGPKLSVISIDHLPSLLP 347 (394)
T ss_dssp SCCCSCCHHHHCCTTC------CCCEEEETTCCTTCTTCSSCSCCCCCBTTBCCEEECCSSSSCEEEECCTTGGGGSH
T ss_pred CCCcccCHHHHhcCcC------CCeEEEEEecCCCCCcCcccccccCCccCCCEEEECCCCCCCEEEEEeCChhhhhH
Confidence 4789999977521 237999997542 1221 1334455 99999999988653
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00024 Score=71.13 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=34.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
.+.+.+|+|||+|++|..++.+|...|+.+|+++|.+.
T Consensus 33 kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 33 KIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp GGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 35788999999999999999999999999999999865
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.44 E-value=6.9e-05 Score=74.11 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=53.5
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.+|+|||+|.||..++..|...|. +|++++ ++++++.+.+. |. . ...+..+.+.++|+||.|++.+..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~-~~~~~~~~~~~-g~---~--~~~~~~~~~~~~D~vi~~vp~~~~ 71 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARAGH-QLHVTT-IGPVADELLSL-GA---V--NVETARQVTEFADIIFIMVPDTPQ 71 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHHTTC-EEEECC-SSCCCHHHHTT-TC---B--CCSSHHHHHHTCSEEEECCSSHHH
T ss_pred CEEEEEccCHHHHHHHHHHHhCCC-EEEEEc-CHHHHHHHHHc-CC---c--ccCCHHHHHhcCCEEEEECCCHHH
Confidence 589999999999999999999997 599999 88887666543 31 1 234555666789999999988753
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00023 Score=72.78 Aligned_cols=71 Identities=15% Similarity=0.254 Sum_probs=51.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccch-HHhhcCCCcEEEEcCCCC
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSE-MLSCAADADVVFTSTASE 320 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~-~~~~l~~aDVVI~AT~s~ 320 (513)
.++|+|||+|.||..+++.|...|. +|+++||++++++. +.++|. . ...+.++ +.++..++|+||.|++..
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~~~~-a~~~G~-~-~~~~~~e~~~~a~~~aDlVilavP~~ 79 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAANH-SVFGYNRSRSGAKS-AVDEGF-D-VSADLEATLQRAAAEDALIVLAVPMT 79 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHH-HHHTTC-C-EESCHHHHHHHHHHTTCEEEECSCHH
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH-HHHcCC-e-eeCCHHHHHHhcccCCCEEEEeCCHH
Confidence 4679999999999999999999997 49999999988754 455653 1 1112222 122234689999999953
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00026 Score=69.95 Aligned_cols=72 Identities=21% Similarity=0.201 Sum_probs=53.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKG-CTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G-~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.++|.|||+|.||..++..|...| ..+|++++|++++.+.+.+ .|... . ...+..+.+.++|+||.|++...
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~-~g~~~-~--~~~~~~~~~~~aDvVilavp~~~ 78 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE-RGIVD-E--ATADFKVFAALADVIILAVPIKK 78 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH-TTSCS-E--EESCTTTTGGGCSEEEECSCHHH
T ss_pred cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH-cCCcc-c--ccCCHHHhhcCCCEEEEcCCHHH
Confidence 468999999999999999999885 2469999999988866544 44210 1 12344455678999999998653
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00023 Score=71.76 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=54.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC------CcceeecccchHHhhcCCCcEEEEcCCC
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN------GVEIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g------~~~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
..+|.|||+|.||..++..|...|..+|+++++++++++..+..+. .....+....+. +.+.++|+||.|++.
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~ 82 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI 82 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence 4689999999999999999999997459999999877655332211 001122222444 568899999999987
Q ss_pred Cc
Q 010322 320 EA 321 (513)
Q Consensus 320 ~~ 321 (513)
|.
T Consensus 83 p~ 84 (317)
T 2ewd_A 83 PG 84 (317)
T ss_dssp SS
T ss_pred CC
Confidence 64
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00029 Score=74.76 Aligned_cols=74 Identities=14% Similarity=0.273 Sum_probs=56.5
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc--------------ceeecccchHHhhcCCCcE
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV--------------EIIYKPLSEMLSCAADADV 312 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~--------------~~~~~~~~~~~~~l~~aDV 312 (513)
++|.|||+|.||..++..|...|. +|++++|++++.+.+.+..... ...+....+..+++.++|+
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDv 81 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGA-NVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADI 81 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSE
T ss_pred CEEEEECcCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCE
Confidence 589999999999999999999998 5999999999988776621100 0011123456667889999
Q ss_pred EEEcCCCCc
Q 010322 313 VFTSTASEA 321 (513)
Q Consensus 313 VI~AT~s~~ 321 (513)
||.|++.+.
T Consensus 82 ViiaVptp~ 90 (450)
T 3gg2_A 82 IFIAVGTPA 90 (450)
T ss_dssp EEECCCCCB
T ss_pred EEEEcCCCc
Confidence 999999874
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00017 Score=75.57 Aligned_cols=90 Identities=13% Similarity=0.117 Sum_probs=66.1
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC-
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE- 320 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~- 320 (513)
..+.|++++|||.|.||+.+++.|...|.+ |+++||+.... .++ .. ...++.+.+..+|+|+.+++..
T Consensus 141 ~el~gktlGiIGlG~IG~~vA~~l~~~G~~-V~~~d~~~~~~------~~~--~~--~~~~l~ell~~aDvV~l~~P~t~ 209 (404)
T 1sc6_A 141 FEARGKKLGIIGYGHIGTQLGILAESLGMY-VYFYDIENKLP------LGN--AT--QVQHLSDLLNMSDVVSLHVPENP 209 (404)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCCC------CTT--CE--ECSCHHHHHHHCSEEEECCCSST
T ss_pred cccCCCEEEEEeECHHHHHHHHHHHHCCCE-EEEEcCCchhc------cCC--ce--ecCCHHHHHhcCCEEEEccCCCh
Confidence 357899999999999999999999999984 99999975421 221 11 2235666778899999998775
Q ss_pred --ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 --APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 --~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+++.+.+..+. ...++|+.+
T Consensus 210 ~t~~li~~~~l~~mk-------~ga~lIN~a 233 (404)
T 1sc6_A 210 STKNMMGAKEISLMK-------PGSLLINAS 233 (404)
T ss_dssp TTTTCBCHHHHHHSC-------TTEEEEECS
T ss_pred HHHHHhhHHHHhhcC-------CCeEEEECC
Confidence 3466666666543 236778876
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0003 Score=70.67 Aligned_cols=72 Identities=22% Similarity=0.356 Sum_probs=53.6
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHHhC----Cc---ceeecccchHHhhcCCCcEEEEcCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNR--SEERVAAICEELN----GV---EIIYKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR--s~~ra~~la~~~g----~~---~~~~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
+|+|||+|.||..++..|...|. +|++++| ++++.+.+.+... +. .+.+...++..+.+.++|+||.|++
T Consensus 2 ~I~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (335)
T 1txg_A 2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (335)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCC-EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred EEEEECcCHHHHHHHHHHHhCCC-eEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence 79999999999999999999997 6999999 9888876655310 00 0011111255566789999999998
Q ss_pred CC
Q 010322 319 SE 320 (513)
Q Consensus 319 s~ 320 (513)
..
T Consensus 81 ~~ 82 (335)
T 1txg_A 81 TD 82 (335)
T ss_dssp GG
T ss_pred hH
Confidence 86
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00022 Score=69.43 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=51.4
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNR--SEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR--s~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
+|.|||+|.||..++..|...|. +|++++| ++++++.+.+. |. . .+..+.+.++|+||.|++.+..
T Consensus 2 ~I~iIG~G~mG~~la~~l~~~g~-~V~~~~~~~~~~~~~~~~~~-g~---~----~~~~~~~~~aDvvi~~v~~~~~ 69 (264)
T 1i36_A 2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLEGRSPSTIERARTV-GV---T----ETSEEDVYSCPVVISAVTPGVA 69 (264)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTC-EEEECCTTCCHHHHHHHHHH-TC---E----ECCHHHHHTSSEEEECSCGGGH
T ss_pred eEEEEechHHHHHHHHHHHHCCC-eEEEeCCccCHHHHHHHHHC-CC---c----CCHHHHHhcCCEEEEECCCHHH
Confidence 79999999999999999999998 5999999 77777666543 32 2 3334456789999999988643
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00021 Score=73.25 Aligned_cols=71 Identities=21% Similarity=0.309 Sum_probs=53.6
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC------Ccce--eecccchHHhhcCCCcEEEEcCCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN------GVEI--IYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g------~~~~--~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
+|+|||+|.||..++..|...|. +|++++|++++++.+.+... +... .+....+..+.+.++|+||.|++.
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~ 95 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT 95 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEE-EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh
Confidence 89999999999999999998886 59999999998877766521 1000 011223455667889999999986
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0004 Score=70.58 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=55.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC------cceeecccchHHhhcCCCcEEEEc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG------VEIIYKPLSEMLSCAADADVVFTS 316 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~------~~~~~~~~~~~~~~l~~aDVVI~A 316 (513)
.....+|.|||+|.+|..++..|...|..+|.++|+++++++..+..+.. ....+....+. +++.++|+||.|
T Consensus 4 ~m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIia 82 (324)
T 3gvi_A 4 SMARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVT 82 (324)
T ss_dssp --CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEEC
T ss_pred CCcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEc
Confidence 34567999999999999999999988874699999998876533332211 01122222343 678999999999
Q ss_pred CCCCc
Q 010322 317 TASEA 321 (513)
Q Consensus 317 T~s~~ 321 (513)
.+.|.
T Consensus 83 ag~p~ 87 (324)
T 3gvi_A 83 AGVPR 87 (324)
T ss_dssp CSCCC
T ss_pred cCcCC
Confidence 88763
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00027 Score=74.56 Aligned_cols=74 Identities=19% Similarity=0.316 Sum_probs=54.8
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc--------------ceeecccchHHhhcCCCcE
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV--------------EIIYKPLSEMLSCAADADV 312 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~--------------~~~~~~~~~~~~~l~~aDV 312 (513)
++|.|||+|.||..++..|...|. +|++++|++++.+.+.+..... ...+....+..+.+.++|+
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~-~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDv 79 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDV 79 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCE
Confidence 379999999999999999999998 5999999999987765421000 0011223455556778999
Q ss_pred EEEcCCCCc
Q 010322 313 VFTSTASEA 321 (513)
Q Consensus 313 VI~AT~s~~ 321 (513)
||.|++.+.
T Consensus 80 viiaVptp~ 88 (436)
T 1mv8_A 80 SFICVGTPS 88 (436)
T ss_dssp EEECCCCCB
T ss_pred EEEEcCCCc
Confidence 999998875
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00064 Score=69.10 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=57.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCcc-e--eecccchHHhhcCCCcEEEEcCC
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGVE-I--IYKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~~-~--~~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
+..+.+|.|||+|.+|..++..|...|. .+|.++|++.++++..+..+.... . .+....+..+.+.++|+||.+.+
T Consensus 6 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag 85 (326)
T 3vku_A 6 DKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAG 85 (326)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCC
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCC
Confidence 3467899999999999999999998886 589999999998876665553210 0 01111233566889999999988
Q ss_pred CC
Q 010322 319 SE 320 (513)
Q Consensus 319 s~ 320 (513)
.|
T Consensus 86 ~~ 87 (326)
T 3vku_A 86 AP 87 (326)
T ss_dssp CC
T ss_pred CC
Confidence 76
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00044 Score=70.55 Aligned_cols=91 Identities=14% Similarity=0.211 Sum_probs=67.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCC--
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTAS-- 319 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s-- 319 (513)
..+.|++|+|||.|.+|+.+++.+...|.+ |..+++..... . ...+ +.. .++.+.++.+|+|+.+++.
T Consensus 137 ~~l~g~tvGIiG~G~IG~~va~~~~~fg~~-v~~~d~~~~~~--~-~~~~---~~~---~~l~ell~~sDivslh~Plt~ 206 (334)
T 3kb6_A 137 RELNRLTLGVIGTGRIGSRVAMYGLAFGMK-VLCYDVVKRED--L-KEKG---CVY---TSLDELLKESDVISLHVPYTK 206 (334)
T ss_dssp CCGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCHH--H-HHTT---CEE---CCHHHHHHHCSEEEECCCCCT
T ss_pred ceecCcEEEEECcchHHHHHHHhhcccCce-eeecCCccchh--h-hhcC---cee---cCHHHHHhhCCEEEEcCCCCh
Confidence 356899999999999999999999999995 88999875322 2 2222 122 3456667899999998665
Q ss_pred -CccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 320 -EAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 320 -~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
+..+|+.+.++.+. ...++|..|
T Consensus 207 ~T~~li~~~~l~~mk-------~~a~lIN~a 230 (334)
T 3kb6_A 207 ETHHMINEERISLMK-------DGVYLINTA 230 (334)
T ss_dssp TTTTCBCHHHHHHSC-------TTEEEEECS
T ss_pred hhccCcCHHHHhhcC-------CCeEEEecC
Confidence 45688988888764 237888876
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00021 Score=75.97 Aligned_cols=75 Identities=15% Similarity=0.130 Sum_probs=56.9
Q ss_pred CCC-CeEEEEcccHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEc
Q 010322 244 HAT-ARMLVIGAGKMGKLVIKHLVAK------GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTS 316 (513)
Q Consensus 244 l~g-~~VlVIGaG~mG~~ia~~L~~~------G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~A 316 (513)
+.| ++|.|||+|.||.++++.|+.. |. +|++.+|+..+..+.+.+.|... ......+..+++.++|+||.|
T Consensus 51 L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~-~ViVg~r~~sks~e~A~e~G~~v-~d~ta~s~aEAa~~ADVVILa 128 (525)
T 3fr7_A 51 FKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKIGLRKGSKSFDEARAAGFTE-ESGTLGDIWETVSGSDLVLLL 128 (525)
T ss_dssp TTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCC-EEEEEECTTCSCHHHHHHTTCCT-TTTCEEEHHHHHHHCSEEEEC
T ss_pred hcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCC-EEEEEeCCchhhHHHHHHCCCEE-ecCCCCCHHHHHhcCCEEEEC
Confidence 578 9999999999999999999998 88 58888887655556677766320 000124566778899999999
Q ss_pred CCCC
Q 010322 317 TASE 320 (513)
Q Consensus 317 T~s~ 320 (513)
++..
T Consensus 129 VP~~ 132 (525)
T 3fr7_A 129 ISDA 132 (525)
T ss_dssp SCHH
T ss_pred CChH
Confidence 9875
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00071 Score=65.66 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=57.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec-----ccchHHhh-------cCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK-----PLSEMLSC-------AAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~-----~~~~~~~~-------l~~ 309 (513)
.+.+++++|.|+ |.+|+.+++.|...|++ |++++|+.+++++++++++.. ..+. ..+++.+. ...
T Consensus 5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~-~~~~~~D~~~~~~v~~~~~~~~~~~g~ 82 (259)
T 4e6p_A 5 RLEGKSALITGSARGIGRAFAEAYVREGAT-VAIADIDIERARQAAAEIGPA-AYAVQMDVTRQDSIDAAIAATVEHAGG 82 (259)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCTT-EEEEECCTTCHHHHHHHHHHHHHHSSS
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCC-ceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 568999999998 99999999999999985 999999999998888877532 1111 11222222 347
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|++|++.+..
T Consensus 83 id~lv~~Ag~~ 93 (259)
T 4e6p_A 83 LDILVNNAALF 93 (259)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCcC
Confidence 99999998764
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00058 Score=68.75 Aligned_cols=71 Identities=28% Similarity=0.299 Sum_probs=54.8
Q ss_pred eEEEEcccHHHHHH-HHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCCcc
Q 010322 248 RMLVIGAGKMGKLV-IKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASEAP 322 (513)
Q Consensus 248 ~VlVIGaG~mG~~i-a~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~~~ 322 (513)
+|+|||+|.||..+ +..|...|++-+.+++++++++++++++++.. ..+.+..+.+. ++|+|+.||+....
T Consensus 2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~----~~~~~~~~~l~~~~~D~V~i~tp~~~h 75 (332)
T 2glx_A 2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIG----KSVTSVEELVGDPDVDAVYVSTTNELH 75 (332)
T ss_dssp EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCS----CCBSCHHHHHTCTTCCEEEECSCGGGH
T ss_pred eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEEeCChhHh
Confidence 69999999999997 77777766765668999999999999988631 12345555554 59999999987543
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0008 Score=64.93 Aligned_cols=76 Identities=20% Similarity=0.236 Sum_probs=57.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec-----ccchHHhh-------cCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK-----PLSEMLSC-------AAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~-----~~~~~~~~-------l~~ 309 (513)
.+.|++++|.|+ |++|+.+++.|...|++ |++++|+.++.++++++++.. +.+. ..+++.+. ...
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 80 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADGAT-VIVSDINAEGAKAAAASIGKK-ARAIAADISDPGSVKALFAEIQALTGG 80 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHHCTT-EEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCc-eEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence 578999999998 99999999999999995 999999999998888877532 2221 11222222 247
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|++|++.+..
T Consensus 81 id~lv~nAg~~ 91 (247)
T 3rwb_A 81 IDILVNNASIV 91 (247)
T ss_dssp CSEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999988754
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0025 Score=65.44 Aligned_cols=89 Identities=18% Similarity=0.228 Sum_probs=66.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC-CCcEEEEcCCCCc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA-DADVVFTSTASEA 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~-~aDVVI~AT~s~~ 321 (513)
++.|++|+|+|.|.+|+.+++.|...|++ |+++|+++.+ .++++.++. ...+.++ .+. .+||++.|. ..
T Consensus 172 ~L~GktV~I~G~GnVG~~~A~~l~~~Gak-VvvsD~~~~~-~~~a~~~ga---~~v~~~e---ll~~~~DIliP~A--~~ 241 (355)
T 1c1d_A 172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQ-LLVADTDTER-VAHAVALGH---TAVALED---VLSTPCDVFAPCA--MG 241 (355)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHH-HHHHHHTTC---EECCGGG---GGGCCCSEEEECS--CS
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEEeCCccH-HHHHHhcCC---EEeChHH---hhcCccceecHhH--HH
Confidence 68999999999999999999999999995 8899999877 567777763 3333333 344 899999763 34
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..|+.+.+..+ +..+++.-+
T Consensus 242 ~~I~~~~~~~l--------k~~iVie~A 261 (355)
T 1c1d_A 242 GVITTEVARTL--------DCSVVAGAA 261 (355)
T ss_dssp CCBCHHHHHHC--------CCSEECCSC
T ss_pred hhcCHHHHhhC--------CCCEEEECC
Confidence 46777766553 235777766
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00055 Score=69.44 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=56.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCCcc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~~~ 322 (513)
.+|+|||+|.||..++..|... ++.-+.+++|++++++.++++++. . .+.+..+.+. ++|+|+.||+....
T Consensus 5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~---~--~~~~~~~~l~~~~~D~V~i~tp~~~h 78 (344)
T 3euw_A 5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGA---E--AVASPDEVFARDDIDGIVIGSPTSTH 78 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTC---E--EESSHHHHTTCSCCCEEEECSCGGGH
T ss_pred eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCC---c--eeCCHHHHhcCCCCCEEEEeCCchhh
Confidence 4799999999999999999886 555455899999999999998862 2 2355666666 89999999987654
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00047 Score=70.29 Aligned_cols=71 Identities=13% Similarity=0.194 Sum_probs=57.5
Q ss_pred CeEEEEcccHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhc--CCCcEEEEcCCCCcc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCA--ADADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l--~~aDVVI~AT~s~~~ 322 (513)
.+|+|||+|.||..++..+... +++-+.+++|++++++.++++++. . .+.+..+.+ .++|+|+.||+....
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~---~--~~~~~~~~l~~~~~D~V~i~tp~~~h 79 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNC---A--GDATMEALLAREDVEMVIITVPNDKH 79 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTC---C--CCSSHHHHHHCSSCCEEEECSCTTSH
T ss_pred ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCC---C--CcCCHHHHhcCCCCCEEEEeCChHHH
Confidence 5899999999999999999876 665466899999999999998863 1 245555655 579999999998754
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00054 Score=73.29 Aligned_cols=74 Identities=19% Similarity=0.350 Sum_probs=53.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh----------CCcce--------eecccchHHhhc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL----------NGVEI--------IYKPLSEMLSCA 307 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~----------g~~~~--------~~~~~~~~~~~l 307 (513)
-++|.|||+|.||..++..|...|.. |+++|+++++++.+.+.+ |.... .+....+. +.+
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~aG~~-V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 82 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASHGHQ-VLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDI-HAL 82 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCC-EEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCG-GGG
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCH-HHh
Confidence 46899999999999999999999985 999999999886655431 11000 01122333 357
Q ss_pred CCCcEEEEcCCCCc
Q 010322 308 ADADVVFTSTASEA 321 (513)
Q Consensus 308 ~~aDVVI~AT~s~~ 321 (513)
.++|+||.|++...
T Consensus 83 ~~aDlVIeAVpe~~ 96 (483)
T 3mog_A 83 AAADLVIEAASERL 96 (483)
T ss_dssp GGCSEEEECCCCCH
T ss_pred cCCCEEEEcCCCcH
Confidence 89999999998763
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00064 Score=68.90 Aligned_cols=75 Identities=16% Similarity=0.222 Sum_probs=55.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC------cceeecccchHHhhcCCCcEEEEcCCC
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG------VEIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~------~~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
..+|.|||+|.||..++..|...|.-+|.++|+++++++..+..+.. ....+....+. +.+.++|+||.|.+.
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g~ 82 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAGF 82 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence 46899999999999999999998883499999998877644443321 11122222455 678999999999977
Q ss_pred Cc
Q 010322 320 EA 321 (513)
Q Consensus 320 ~~ 321 (513)
|.
T Consensus 83 p~ 84 (322)
T 1t2d_A 83 TK 84 (322)
T ss_dssp SS
T ss_pred CC
Confidence 63
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00015 Score=71.51 Aligned_cols=67 Identities=16% Similarity=0.317 Sum_probs=47.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeE-EEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKM-VVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V-~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.+|.|||+|.||..+++.|... . +| .+++|++++++.+++.++. ...+..+.+.++|+||.|++...
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-~-~v~~v~~~~~~~~~~~~~~~g~------~~~~~~~~~~~~DvVilav~~~~ 70 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-Y-EIGYILSRSIDRARNLAEVYGG------KAATLEKHPELNGVVFVIVPDRY 70 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC------CCCEECSSHHHHHHHHHHTCC------CCCSSCCCCC---CEEECSCTTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-C-cEEEEEeCCHHHHHHHHHHcCC------ccCCHHHHHhcCCEEEEeCChHH
Confidence 3699999999999999998876 5 57 5999999999888877652 22344455678999999998864
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00074 Score=65.39 Aligned_cols=76 Identities=17% Similarity=0.265 Sum_probs=56.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec--c---cchHHhhc-------CC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK--P---LSEMLSCA-------AD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~--~---~~~~~~~l-------~~ 309 (513)
++.+++++|.|+ |.+|+.+++.|...|++ |++++|+.++.++++++++. .+.+. + .+++.+.+ ..
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (254)
T 1hdc_A 2 DLSGKTVIITGGARGLGAEAARQAVAAGAR-VVLADVLDEEGAATARELGD-AARYQHLDVTIEEDWQRVVAYAREEFGS 79 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTTGG-GEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCC-ceeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 467899999998 99999999999999985 99999999888877776642 11111 1 12233222 37
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|++|++.+..
T Consensus 80 iD~lv~nAg~~ 90 (254)
T 1hdc_A 80 VDGLVNNAGIS 90 (254)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 99999998754
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0004 Score=71.34 Aligned_cols=77 Identities=17% Similarity=0.353 Sum_probs=55.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-------------------HHHHHHHHHhC----Ccceeecc-
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-------------------ERVAAICEELN----GVEIIYKP- 299 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-------------------~ra~~la~~~g----~~~~~~~~- 299 (513)
+.+.+|+|+|+|++|..++.+|...|+.+|+++|++. .|++.+++.+. ...+...+
T Consensus 116 L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 195 (353)
T 3h5n_A 116 LKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIAL 195 (353)
T ss_dssp HHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred HhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEeec
Confidence 3578999999999999999999999999999999752 24544444432 21122111
Q ss_pred ----cchHHhhcCCCcEEEEcCCCCc
Q 010322 300 ----LSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 300 ----~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
..++.+ +.++|+||+||....
T Consensus 196 ~i~~~~~~~~-~~~~DlVvd~~Dn~~ 220 (353)
T 3h5n_A 196 NINDYTDLHK-VPEADIWVVSADHPF 220 (353)
T ss_dssp CCCSGGGGGG-SCCCSEEEECCCCST
T ss_pred ccCchhhhhH-hccCCEEEEecCChH
Confidence 112445 889999999997765
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00048 Score=72.60 Aligned_cols=74 Identities=12% Similarity=0.262 Sum_probs=55.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc------------ceeecccchHHhhcCCCcE
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV------------EIIYKPLSEMLSCAADADV 312 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~------------~~~~~~~~~~~~~l~~aDV 312 (513)
.-++|.|||+|.||..++..|.. |. +|+++|+++++.+.+.+..... ...+....+..+++.++|+
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~-G~-~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aDv 112 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ-NH-EVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNADY 112 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT-TS-EEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCSE
T ss_pred CCCEEEEECcCHHHHHHHHHHHc-CC-eEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCCCE
Confidence 34689999999999999999887 86 6999999999987766521000 0012223466677889999
Q ss_pred EEEcCCCC
Q 010322 313 VFTSTASE 320 (513)
Q Consensus 313 VI~AT~s~ 320 (513)
||.|++.+
T Consensus 113 ViiaVPt~ 120 (432)
T 3pid_A 113 VIIATPTD 120 (432)
T ss_dssp EEECCCCE
T ss_pred EEEeCCCc
Confidence 99999886
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00097 Score=64.44 Aligned_cols=76 Identities=16% Similarity=0.277 Sum_probs=57.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec--c---cchHHhh-------cCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK--P---LSEMLSC-------AAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~--~---~~~~~~~-------l~~ 309 (513)
++.+++++|.|+ |++|+.+++.|...|++ |++++|+.+++++++++++.. +.+. + .+++.+. ...
T Consensus 6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~g~ 83 (261)
T 3n74_A 6 SLEGKVALITGAGSGFGEGMAKRFAKGGAK-VVIVDRDKAGAERVAGEIGDA-ALAVAADISKEADVDAAVEAALSKFGK 83 (261)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCTT-EEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHhCCc-eEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 467999999998 89999999999999985 999999999998888887642 1211 1 1222222 247
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|++|++.+..
T Consensus 84 id~li~~Ag~~ 94 (261)
T 3n74_A 84 VDILVNNAGIG 94 (261)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCccC
Confidence 89999998764
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00024 Score=77.50 Aligned_cols=79 Identities=19% Similarity=0.341 Sum_probs=57.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-------------------HHHHHHHHHhC----Ccceeecc-
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-------------------ERVAAICEELN----GVEIIYKP- 299 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-------------------~ra~~la~~~g----~~~~~~~~- 299 (513)
+.+.+|+|||+|++|..++++|...|+.+|+++|.+. .|++.+++.+. ...+....
T Consensus 324 L~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~~~ 403 (615)
T 4gsl_A 324 IKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKL 403 (615)
T ss_dssp HHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECC
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEeec
Confidence 4678999999999999999999999999999999853 35555555442 22222211
Q ss_pred ------------------cchHHhhcCCCcEEEEcCCCCcc
Q 010322 300 ------------------LSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 300 ------------------~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.+++.+.+.++|+||+||-....
T Consensus 404 ~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~~t 444 (615)
T 4gsl_A 404 SIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRES 444 (615)
T ss_dssp CCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSGGG
T ss_pred cccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCCHHH
Confidence 12344567789999999987653
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00086 Score=67.44 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=52.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhCCc------ceeecccchHHhhcCCCcEEEEcCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKG-CTKMVVVNRSEERVAAICEELNGV------EIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G-~~~V~v~nRs~~ra~~la~~~g~~------~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
.+|.|||+|.||..++..|...+ ..+|+++++++++++.++..+... ...+....+..+ +.++|+||.|++.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~ 79 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL 79 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence 37999999999999999998853 347999999988877655333210 112222244444 8899999999987
Q ss_pred Cc
Q 010322 320 EA 321 (513)
Q Consensus 320 ~~ 321 (513)
|.
T Consensus 80 p~ 81 (310)
T 1guz_A 80 PR 81 (310)
T ss_dssp CC
T ss_pred CC
Confidence 63
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00048 Score=68.78 Aligned_cols=73 Identities=18% Similarity=0.312 Sum_probs=57.4
Q ss_pred CCCeEEEEcccHHHHH-HHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 245 ATARMLVIGAGKMGKL-VIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~-ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
...+|+|||+|.||.. ++..|... ++.-+.+++|++++++.++++++.. .+++..+.+.++|+|+.||+....
T Consensus 5 ~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~-----~~~~~~~ll~~~D~V~i~tp~~~h 79 (308)
T 3uuw_A 5 KNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIM-----PFDSIESLAKKCDCIFLHSSTETH 79 (308)
T ss_dssp CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCC-----BCSCHHHHHTTCSEEEECCCGGGH
T ss_pred ccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCC-----CcCCHHHHHhcCCEEEEeCCcHhH
Confidence 3468999999999996 88888764 5654558999999999999998742 145566666699999999998754
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0004 Score=73.58 Aligned_cols=75 Identities=17% Similarity=0.310 Sum_probs=56.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC-----c---------ceeecccchHHhhcCCCc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG-----V---------EIIYKPLSEMLSCAADAD 311 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~-----~---------~~~~~~~~~~~~~l~~aD 311 (513)
.-++.|||+|-||..++..|...|. +|+++||++++.+.+.+.... . ...+....++.+++.++|
T Consensus 8 ~~~~~vIGlG~vG~~~A~~La~~G~-~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aD 86 (446)
T 4a7p_A 8 SVRIAMIGTGYVGLVSGACFSDFGH-EVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDAD 86 (446)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCS
T ss_pred ceEEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCC
Confidence 4689999999999999999999998 599999999998777652100 0 001122346667788999
Q ss_pred EEEEcCCCCc
Q 010322 312 VVFTSTASEA 321 (513)
Q Consensus 312 VVI~AT~s~~ 321 (513)
+||.|++.|.
T Consensus 87 vvii~Vptp~ 96 (446)
T 4a7p_A 87 AVFIAVGTPS 96 (446)
T ss_dssp EEEECCCCCB
T ss_pred EEEEEcCCCC
Confidence 9999977764
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0019 Score=65.50 Aligned_cols=79 Identities=18% Similarity=0.379 Sum_probs=60.9
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceee-----cccchHHhhcCCCcEEEE
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIY-----KPLSEMLSCAADADVVFT 315 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~-----~~~~~~~~~l~~aDVVI~ 315 (513)
.+.+++|+|.|+ |.+|+.+++.|... |..+|++++|+..+...+...+....+.+ ...+.+.+++.++|+||.
T Consensus 18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih 97 (344)
T 2gn4_A 18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIH 97 (344)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEE
Confidence 467899999997 99999999999999 98679999999988877777664211221 122345667889999999
Q ss_pred cCCCCc
Q 010322 316 STASEA 321 (513)
Q Consensus 316 AT~s~~ 321 (513)
+.+...
T Consensus 98 ~Aa~~~ 103 (344)
T 2gn4_A 98 AAALKH 103 (344)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987653
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00098 Score=65.62 Aligned_cols=76 Identities=14% Similarity=0.221 Sum_probs=57.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceee-----cccchHHhh-------cCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIY-----KPLSEMLSC-------AAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~-----~~~~~~~~~-------l~~ 309 (513)
++.+++++|.|+ |+||+.+++.|...|+ +|++++|+.+++++++++++.. +.. ...+++.+. ...
T Consensus 24 ~l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 101 (277)
T 4dqx_A 24 DLNQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEIGSK-AFGVRVDVSSAKDAESMVEKTTAKWGR 101 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCTT-EEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCc-eEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 578999999998 9999999999999999 5999999999988888877542 111 111222222 247
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|++|++.+..
T Consensus 102 iD~lv~nAg~~ 112 (277)
T 4dqx_A 102 VDVLVNNAGFG 112 (277)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCcC
Confidence 89999998754
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00034 Score=76.23 Aligned_cols=79 Identities=19% Similarity=0.341 Sum_probs=56.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeC----------CH---------HHHHHHHHHhC----Ccceeecc-
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNR----------SE---------ERVAAICEELN----GVEIIYKP- 299 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR----------s~---------~ra~~la~~~g----~~~~~~~~- 299 (513)
+.+.+|+|||+|++|..++++|...|+.+|+++|. .. .|++.+++.+. ...+...+
T Consensus 325 L~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~~~~ 404 (598)
T 3vh1_A 325 IKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKL 404 (598)
T ss_dssp HHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEEECC
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEEEec
Confidence 46789999999999999999999999999999954 32 36666665543 22222211
Q ss_pred ------------------cchHHhhcCCCcEEEEcCCCCcc
Q 010322 300 ------------------LSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 300 ------------------~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.+++.+.+.++|+||+||.....
T Consensus 405 ~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatDn~~t 445 (598)
T 3vh1_A 405 SIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRES 445 (598)
T ss_dssp CCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCSBGGG
T ss_pred cccccCcccccccccccCHHHHHHHHhcCCEEEECCCCHHH
Confidence 12344567789999999987653
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00068 Score=68.39 Aligned_cols=70 Identities=21% Similarity=0.308 Sum_probs=55.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCCcc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~~~ 322 (513)
.+|.|||+|.||..++..|... +++-+.+++|++++++.+++.++. . +.+..+.+. ++|+|+.||+....
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~---~---~~~~~~~l~~~~~D~V~i~tp~~~h 76 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGC---E---VRTIDAIEAAADIDAVVICTPTDTH 76 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTC---E---ECCHHHHHHCTTCCEEEECSCGGGH
T ss_pred eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCC---C---cCCHHHHhcCCCCCEEEEeCCchhH
Confidence 4799999999999999999886 665455899999999999998863 2 345555554 79999999987644
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00057 Score=64.29 Aligned_cols=74 Identities=15% Similarity=0.315 Sum_probs=54.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHH-HcCCCeEEEEeCCHH-HHHHHHHHhCCcce---eecccchHHhhcCCCcEEEEcCCC
Q 010322 246 TARMLVIGA-GKMGKLVIKHLV-AKGCTKMVVVNRSEE-RVAAICEELNGVEI---IYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~-~~G~~~V~v~nRs~~-ra~~la~~~g~~~~---~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
.++|+|+|+ |.+|+.+++.|. ..|+ +|++++|+++ ++..++........ .+...+++.+.+.++|+||++.+.
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~ 83 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAME 83 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCC
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCC
Confidence 356999997 999999999999 8898 5999999998 77666532222111 111223556678899999999986
Q ss_pred C
Q 010322 320 E 320 (513)
Q Consensus 320 ~ 320 (513)
.
T Consensus 84 ~ 84 (221)
T 3r6d_A 84 S 84 (221)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0014 Score=62.45 Aligned_cols=77 Identities=23% Similarity=0.362 Sum_probs=56.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecc---cchHHhhc---CCCcEEEE
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKP---LSEMLSCA---ADADVVFT 315 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~---~~~~~~~l---~~aDVVI~ 315 (513)
++.+++|+|.|+ |.+|+.+++.|...|+ +|++++|+.++.+.+.+++.+......+ .+++.+.+ ...|+||+
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~ 82 (244)
T 3d3w_A 4 FLAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVN 82 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEE
T ss_pred ccCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEEE
Confidence 467899999999 9999999999999998 5999999998887777665432111112 22333333 35899999
Q ss_pred cCCCC
Q 010322 316 STASE 320 (513)
Q Consensus 316 AT~s~ 320 (513)
+.+..
T Consensus 83 ~Ag~~ 87 (244)
T 3d3w_A 83 NAAVA 87 (244)
T ss_dssp CCCCC
T ss_pred CCccC
Confidence 98764
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.001 Score=67.43 Aligned_cols=76 Identities=14% Similarity=0.234 Sum_probs=55.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc------ceeecccchHHhhcCCCcEEEEcCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV------EIIYKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~------~~~~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
...+|.|||+|.||..++..|...|..+|.++|+++++++..+..+... ...+....+ .+.+.++|+||.+.+
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~a~~~aDvVIi~ag 82 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND-YKDLENSDVVIVTAG 82 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC-HHHHCCCCEEEEcCC
Confidence 4578999999999999999999887647999999988876555444311 112221233 467899999999988
Q ss_pred CCc
Q 010322 319 SEA 321 (513)
Q Consensus 319 s~~ 321 (513)
.|.
T Consensus 83 ~p~ 85 (321)
T 3p7m_A 83 VPR 85 (321)
T ss_dssp CCC
T ss_pred cCC
Confidence 763
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00069 Score=68.82 Aligned_cols=75 Identities=17% Similarity=0.187 Sum_probs=54.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC------cceeecccchHHhhcCCCcEEEEcCCC
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG------VEIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~------~~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
..+|.|||+|.||..++..|...|.-+|+++++++++++..+..+.. ....+....+. +.+.++|+||.|.+.
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~ 92 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGV 92 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCC
Confidence 46899999999999999999999883499999998877643322210 01122232455 678999999999977
Q ss_pred Cc
Q 010322 320 EA 321 (513)
Q Consensus 320 ~~ 321 (513)
|.
T Consensus 93 p~ 94 (328)
T 2hjr_A 93 PR 94 (328)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00089 Score=66.34 Aligned_cols=77 Identities=23% Similarity=0.349 Sum_probs=58.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcc--eee--cccchHH-------hhcCCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVE--IIY--KPLSEML-------SCAADA 310 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~--~~~--~~~~~~~-------~~l~~a 310 (513)
.+.||.++|.|+ ++||+++++.|...|++ |++++|+.+++++.++++++.. +.. ...++.. +.....
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~-V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 104 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGAR-VFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRI 104 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCE
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 478999999999 89999999999999995 9999999999999998887531 111 1112222 224578
Q ss_pred cEEEEcCCCC
Q 010322 311 DVVFTSTASE 320 (513)
Q Consensus 311 DVVI~AT~s~ 320 (513)
|++|++.|..
T Consensus 105 DiLVNNAG~~ 114 (273)
T 4fgs_A 105 DVLFVNAGGG 114 (273)
T ss_dssp EEEEECCCCC
T ss_pred CEEEECCCCC
Confidence 9999988764
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00028 Score=68.51 Aligned_cols=63 Identities=14% Similarity=0.266 Sum_probs=48.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCC---CeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGC---TKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~---~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
..+|.|||+|.||..++..|...|. .+|+++||++++ +|. .+ ..+..+.+..+|+||.|++..
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-------~g~---~~--~~~~~~~~~~~D~vi~~v~~~ 69 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-------TTL---NY--MSSNEELARHCDIIVCAVKPD 69 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-------SSS---EE--CSCHHHHHHHCSEEEECSCTT
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-------Cce---EE--eCCHHHHHhcCCEEEEEeCHH
Confidence 4689999999999999999999883 469999999765 332 22 234445566899999999853
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00097 Score=67.73 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=55.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCC------cceeecccchHHhhcCCCcEEEEcC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNG------VEIIYKPLSEMLSCAADADVVFTST 317 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~------~~~~~~~~~~~~~~l~~aDVVI~AT 317 (513)
...+|.|||+|.||..++..|...|. .+|.++|++.++++..+..+.. ..+.+ ..+..+.+.++|+||.|.
T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i--~~~~~~a~~~aDvVvi~a 81 (326)
T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKT--SYGTYEDCKDADIVCICA 81 (326)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEE--EEECGGGGTTCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEE--EeCcHHHhCCCCEEEEec
Confidence 46789999999999999999998886 5899999999887764443321 01121 122345688999999998
Q ss_pred CCCc
Q 010322 318 ASEA 321 (513)
Q Consensus 318 ~s~~ 321 (513)
|.|.
T Consensus 82 g~p~ 85 (326)
T 3pqe_A 82 GANQ 85 (326)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 8763
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.21 E-value=6.7e-05 Score=70.95 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=51.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
..+++|+|||+|.||..++..|...|. +|++++|+++ .+.+.. .+ +.. . +..+.+..+|+||.|++..
T Consensus 17 ~~~~~I~iIG~G~mG~~la~~L~~~G~-~V~~~~r~~~-~~~~~~-~g---~~~--~-~~~~~~~~aDvVilav~~~ 84 (201)
T 2yjz_A 17 EKQGVVCIFGTGDFGKSLGLKMLQCGY-SVVFGSRNPQ-VSSLLP-RG---AEV--L-CYSEAASRSDVIVLAVHRE 84 (201)
Confidence 467789999999999999999999887 4999999876 434332 22 111 1 4445677899999999975
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00091 Score=67.29 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=53.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc------ceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV------EIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~------~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+|.|||+|.||..++..|...|.-+|.++|+++++++..+..+... ...+....+. +.+.++|+||.|.+.|
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p 81 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP 81 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence 58999999999999999999988634999999987776555444221 1122222454 6689999999999876
Q ss_pred c
Q 010322 321 A 321 (513)
Q Consensus 321 ~ 321 (513)
.
T Consensus 82 ~ 82 (309)
T 1ur5_A 82 R 82 (309)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00075 Score=68.62 Aligned_cols=77 Identities=12% Similarity=0.149 Sum_probs=55.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC------CcceeecccchHHhhcCCCcEEEEcCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN------GVEIIYKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g------~~~~~~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
...+|.|||+|.+|..++..|...|.-+|+++++++++++..+..+. .....+....++.+.+.++|+||.+.+
T Consensus 8 ~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g 87 (331)
T 1pzg_A 8 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG 87 (331)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccC
Confidence 34689999999999999999999887349999999877755333221 111122223566667899999999997
Q ss_pred CCc
Q 010322 319 SEA 321 (513)
Q Consensus 319 s~~ 321 (513)
.|.
T Consensus 88 ~p~ 90 (331)
T 1pzg_A 88 LTK 90 (331)
T ss_dssp CSS
T ss_pred CCC
Confidence 763
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00096 Score=65.27 Aligned_cols=76 Identities=16% Similarity=0.286 Sum_probs=57.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec-----ccchHHhh-------cCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK-----PLSEMLSC-------AAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~-----~~~~~~~~-------l~~ 309 (513)
++.|++++|.|+ |++|+.+++.|...|+. |++++|+.+++++++++++.. +.+. ..+++.+. ...
T Consensus 24 ~l~gk~vlVTGas~gIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~-~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 101 (266)
T 3grp_A 24 KLTGRKALVTGATGGIGEAIARCFHAQGAI-VGLHGTREDKLKEIAADLGKD-VFVFSANLSDRKSIKQLAEVAEREMEG 101 (266)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCSS-EEEEECCTTSHHHHHHHHHHHHHHHTS
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCc-eEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 578999999998 99999999999999984 999999999988888877642 2221 11222222 247
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|++|++.+..
T Consensus 102 iD~lvnnAg~~ 112 (266)
T 3grp_A 102 IDILVNNAGIT 112 (266)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999998764
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00045 Score=64.45 Aligned_cols=71 Identities=20% Similarity=0.411 Sum_probs=51.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchH-HhhcCCCcEEEEcCCCCc
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEM-LSCAADADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~-~~~l~~aDVVI~AT~s~~ 321 (513)
++|+|+|+ |.+|+.+++.|...|. +|++++|++++...+. ........+..+. .+.+.++|+||.+.+.+.
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~ 73 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNAGKITQTH---KDINILQKDIFDLTLSDLSDQNVVVDAYGISP 73 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCSHHHHHHC---SSSEEEECCGGGCCHHHHTTCSEEEECCCSST
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCchhhhhcc---CCCeEEeccccChhhhhhcCCCEEEECCcCCc
Confidence 47999997 9999999999999997 5999999988775543 2211111111111 156789999999988753
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00093 Score=64.49 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=56.9
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcc--ee--ecccchHHhh-------cCCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVE--II--YKPLSEMLSC-------AADA 310 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~--~~--~~~~~~~~~~-------l~~a 310 (513)
++.|++++|.|+ |++|+.+++.|...|++ |++++|+.++++++++.++... +. +...+++.+. ....
T Consensus 6 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 84 (248)
T 3op4_A 6 NLEGKVALVTGASRGIGKAIAELLAERGAK-VIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGV 84 (248)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence 578999999998 99999999999999995 9999999998888877765310 11 1111222222 2478
Q ss_pred cEEEEcCCCC
Q 010322 311 DVVFTSTASE 320 (513)
Q Consensus 311 DVVI~AT~s~ 320 (513)
|++|++.+..
T Consensus 85 D~lv~nAg~~ 94 (248)
T 3op4_A 85 DILVNNAGIT 94 (248)
T ss_dssp SEEEECCCCC
T ss_pred CEEEECCCCC
Confidence 9999998754
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0012 Score=64.26 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=56.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceee-----cccchHHhhc-------CC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIY-----KPLSEMLSCA-------AD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~-----~~~~~~~~~l-------~~ 309 (513)
.+.+++++|.|+ |.+|+.+++.|...|+ +|++++|+.++.++++++++. .+.+ ...+++.+.+ ..
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 81 (260)
T 1nff_A 4 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELAD-AARYVHLDVTQPAQWKAAVDTAVTAFGG 81 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGG-GEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 467899999998 9999999999999998 499999999888777766542 1111 1112233333 37
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|+||++.+..
T Consensus 82 iD~lv~~Ag~~ 92 (260)
T 1nff_A 82 LHVLVNNAGIL 92 (260)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 99999998754
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0011 Score=70.44 Aligned_cols=71 Identities=18% Similarity=0.302 Sum_probs=51.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh----------C---C-----cceeecccchHHhhc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL----------N---G-----VEIIYKPLSEMLSCA 307 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~----------g---~-----~~~~~~~~~~~~~~l 307 (513)
-++|.|||+|.||..++..|...|. +|+++|+++++++...+.+ + . ....+ ..+. +.+
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i--~~~~-~~~ 112 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF--SSST-KEL 112 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE--ESCG-GGG
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh--cCCH-HHH
Confidence 4689999999999999999999998 5999999998775443311 1 0 00111 2333 457
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
.++|+||.|++..
T Consensus 113 ~~aDlVIeaVpe~ 125 (463)
T 1zcj_A 113 STVDLVVEAVFED 125 (463)
T ss_dssp TTCSEEEECCCSC
T ss_pred CCCCEEEEcCCCC
Confidence 8999999999875
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00089 Score=64.62 Aligned_cols=76 Identities=14% Similarity=0.258 Sum_probs=56.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec--c---cchHHhhc-------CC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK--P---LSEMLSCA-------AD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~--~---~~~~~~~l-------~~ 309 (513)
++.+++|+|.|+ |.+|+.+++.|...|++ |++++|+.++..++.++++. .+.+. + .+++.+.+ ..
T Consensus 9 ~~~~k~vlVTGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 86 (265)
T 2o23_A 9 SVKGLVAVITGGASGLGLATAERLVGQGAS-AVLLDLPNSGGEAQAKKLGN-NCVFAPADVTSEKDVQTALALAKGKFGR 86 (265)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECTTSSHHHHHHHHCT-TEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCcHhHHHHHHHhCC-ceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence 467899999999 99999999999999984 99999998887777776653 12221 1 12333333 37
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|+||++.+..
T Consensus 87 id~li~~Ag~~ 97 (265)
T 2o23_A 87 VDVAVNCAGIA 97 (265)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCccC
Confidence 99999998764
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00057 Score=69.65 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=56.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhc--CCCcEEEEcCCCCc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAK--GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCA--ADADVVFTSTASEA 321 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~--G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l--~~aDVVI~AT~s~~ 321 (513)
..+|+|||+|.||..++..+... +++-+.++++++++++.++++++. . .+.+..+.+ .++|+|+.||+...
T Consensus 13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~---~--~~~~~~~ll~~~~~D~V~i~tp~~~ 87 (354)
T 3q2i_A 13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGA---R--GHASLTDMLAQTDADIVILTTPSGL 87 (354)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCC---E--EESCHHHHHHHCCCSEEEECSCGGG
T ss_pred cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCC---c--eeCCHHHHhcCCCCCEEEECCCcHH
Confidence 45899999999999999999887 565456999999999999998863 1 234444444 38999999999764
Q ss_pred c
Q 010322 322 P 322 (513)
Q Consensus 322 ~ 322 (513)
.
T Consensus 88 h 88 (354)
T 3q2i_A 88 H 88 (354)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00073 Score=68.45 Aligned_cols=75 Identities=11% Similarity=0.246 Sum_probs=51.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----Hh------CCc--c-------eeecccchHHh
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICE----EL------NGV--E-------IIYKPLSEMLS 305 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~----~~------g~~--~-------~~~~~~~~~~~ 305 (513)
...+|.|||+|.||..+|..++..|+. |+++|++++.+....+ .+ +.. . ..+....++.+
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~G~~-V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~ 83 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASGGFR-VKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAE 83 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCC-EEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHH
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCe-EEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHh
Confidence 356899999999999999999999996 9999999875432211 11 100 0 00112345666
Q ss_pred hcCCCcEEEEcCCCC
Q 010322 306 CAADADVVFTSTASE 320 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~ 320 (513)
++.++|+||+|.+-.
T Consensus 84 a~~~ad~ViEav~E~ 98 (319)
T 3ado_A 84 AVEGVVHIQECVPEN 98 (319)
T ss_dssp HTTTEEEEEECCCSC
T ss_pred HhccCcEEeeccccH
Confidence 788899999987653
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0015 Score=66.03 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=53.8
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCc-----ceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGV-----EIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~-----~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
++|.|||+|.||..++..|...|. .+|+++++++++++.++..+... ...+.. .+ .+.+.++|+||.|++.+
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~d-~~~~~~aDvViiav~~~ 78 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA-GD-YADLKGSDVVIVAAGVP 78 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE-CC-GGGGTTCSEEEECCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe-CC-HHHhCCCCEEEEccCCC
Confidence 379999999999999999998885 36999999998887766443100 011211 23 34578999999999986
Q ss_pred c
Q 010322 321 A 321 (513)
Q Consensus 321 ~ 321 (513)
.
T Consensus 79 ~ 79 (319)
T 1a5z_A 79 Q 79 (319)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0014 Score=63.60 Aligned_cols=76 Identities=13% Similarity=0.271 Sum_probs=55.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh----CCcceeec--c---cchHHhhc-----
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL----NGVEIIYK--P---LSEMLSCA----- 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~----g~~~~~~~--~---~~~~~~~l----- 307 (513)
++.+++++|.|+ |.+|+.+++.|...|+ +|++++|+.++.+++++++ +. .+.+. + .+++.+.+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~ 81 (263)
T 3ai3_A 4 GISGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFGV-RVLEVAVDVATPEGVDAVVESVRS 81 (263)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHH
Confidence 467899999998 9999999999999998 5999999998877666554 32 11211 1 12232222
Q ss_pred --CCCcEEEEcCCCC
Q 010322 308 --ADADVVFTSTASE 320 (513)
Q Consensus 308 --~~aDVVI~AT~s~ 320 (513)
...|+||++.+..
T Consensus 82 ~~g~id~lv~~Ag~~ 96 (263)
T 3ai3_A 82 SFGGADILVNNAGTG 96 (263)
T ss_dssp HHSSCSEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 3789999998754
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0012 Score=63.95 Aligned_cols=77 Identities=10% Similarity=0.163 Sum_probs=55.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC-cc-ee--ecccchHHhhc-------CCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG-VE-II--YKPLSEMLSCA-------ADA 310 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~-~~-~~--~~~~~~~~~~l-------~~a 310 (513)
++.+++++|.|+ |.+|+.+++.|...|+ +|++++|+.++.+.+.+.+.. .. +. +...+++.+.+ ...
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~i 87 (263)
T 3ak4_A 9 DLSGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGF 87 (263)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence 467899999998 9999999999999998 599999999888777765532 11 11 11112233333 379
Q ss_pred cEEEEcCCCC
Q 010322 311 DVVFTSTASE 320 (513)
Q Consensus 311 DVVI~AT~s~ 320 (513)
|+||++.+..
T Consensus 88 D~lv~~Ag~~ 97 (263)
T 3ak4_A 88 DLLCANAGVS 97 (263)
T ss_dssp CEEEECCCCC
T ss_pred CEEEECCCcC
Confidence 9999998754
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00047 Score=70.98 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=52.8
Q ss_pred CeEEEEcccHHHHHHHHHHHHcC-------CCeEEEEeCCHH-----HHHHHHHHh------CCcce--eecccchHHhh
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKG-------CTKMVVVNRSEE-----RVAAICEEL------NGVEI--IYKPLSEMLSC 306 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G-------~~~V~v~nRs~~-----ra~~la~~~------g~~~~--~~~~~~~~~~~ 306 (513)
++|.|||+|.||..++..|...| . +|++++|+++ +++.+.+.. ++... .+....+..+.
T Consensus 22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea 100 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVGTNAKNNYLFEN-EVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASV 100 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHHHHHHHCTTBCS-CEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCccCCCCC-eEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHH
Confidence 47999999999999999999888 5 5999999988 777766531 11000 01122345566
Q ss_pred cCCCcEEEEcCCC
Q 010322 307 AADADVVFTSTAS 319 (513)
Q Consensus 307 l~~aDVVI~AT~s 319 (513)
+.++|+||.|++.
T Consensus 101 ~~~aDvVilav~~ 113 (375)
T 1yj8_A 101 INDADLLIFIVPC 113 (375)
T ss_dssp HTTCSEEEECCCH
T ss_pred HcCCCEEEEcCCH
Confidence 7889999999986
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00068 Score=64.40 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=52.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhCCcce---eecccchHHhhcCCCcEEEEcCC
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAK--GCTKMVVVNRSEERVAAICEELNGVEI---IYKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~--G~~~V~v~nRs~~ra~~la~~~g~~~~---~~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
.+++|+|.|+ |.+|+.+++.|... |+ +|++++|++++...+. ..... .+...+++.+.+.++|+||.+.+
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~-~V~~~~r~~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 78 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKEKIG---GEADVFIGDITDADSINPAFQGIDALVILTS 78 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTC-EEEEEESCHHHHHHTT---CCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCc-EEEEEEcCCCchhhcC---CCeeEEEecCCCHHHHHHHHcCCCEEEEecc
Confidence 5789999997 99999999999999 66 6999999987764431 11111 11223456667789999999987
Q ss_pred CC
Q 010322 319 SE 320 (513)
Q Consensus 319 s~ 320 (513)
..
T Consensus 79 ~~ 80 (253)
T 1xq6_A 79 AV 80 (253)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0011 Score=64.42 Aligned_cols=76 Identities=21% Similarity=0.359 Sum_probs=57.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec--cc---chHH-------hhcCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK--PL---SEML-------SCAAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~--~~---~~~~-------~~l~~ 309 (513)
++.|++++|.|+ |++|+.+++.|...|+ +|++++|+.++++++.++++.. +.+. +. +++. +....
T Consensus 5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (255)
T 4eso_A 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFGPR-VHALRSDIADLNEIAVLGAAAGQTLGA 82 (255)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGG-EEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCc-ceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 578999999998 9999999999999999 5999999999988888877531 2211 11 2222 22347
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|++|++.+..
T Consensus 83 id~lv~nAg~~ 93 (255)
T 4eso_A 83 IDLLHINAGVS 93 (255)
T ss_dssp EEEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999998764
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.001 Score=65.41 Aligned_cols=76 Identities=16% Similarity=0.255 Sum_probs=55.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec-----ccchHHhh-------cCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK-----PLSEMLSC-------AAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~-----~~~~~~~~-------l~~ 309 (513)
.+.+++++|.|+ |++|+.+++.|...|++ |++++|+.+++++++++++.. +.+. ..+++.+. ...
T Consensus 25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~-~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 102 (272)
T 4dyv_A 25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYG-VALAGRRLDALQETAAEIGDD-ALCVPTDVTDPDSVRALFTATVEKFGR 102 (272)
T ss_dssp ---CCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHTSC-CEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhCCC-eEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 457899999998 99999999999999995 999999999998888887531 1111 12222222 247
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|++|++.+..
T Consensus 103 iD~lVnnAg~~ 113 (272)
T 4dyv_A 103 VDVLFNNAGTG 113 (272)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 99999998864
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0016 Score=63.66 Aligned_cols=77 Identities=21% Similarity=0.268 Sum_probs=56.1
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh----CCcceeec--cc---chHHhh-----
Q 010322 242 SSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL----NGVEIIYK--PL---SEMLSC----- 306 (513)
Q Consensus 242 ~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~----g~~~~~~~--~~---~~~~~~----- 306 (513)
..+.+++++|.|+ |++|+.+++.|...|++ |++++|+.++++.+++++ +. .+.+. +. +++.+.
T Consensus 17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~ 94 (267)
T 1vl8_A 17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCS-VVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSNYEEVKKLLEAVK 94 (267)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHH
Confidence 4678999999998 99999999999999985 999999998877666554 32 11111 11 222222
Q ss_pred --cCCCcEEEEcCCCC
Q 010322 307 --AADADVVFTSTASE 320 (513)
Q Consensus 307 --l~~aDVVI~AT~s~ 320 (513)
....|++|++.+..
T Consensus 95 ~~~g~iD~lvnnAg~~ 110 (267)
T 1vl8_A 95 EKFGKLDTVVNAAGIN 110 (267)
T ss_dssp HHHSCCCEEEECCCCC
T ss_pred HHcCCCCEEEECCCcC
Confidence 24789999998764
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0006 Score=69.05 Aligned_cols=73 Identities=18% Similarity=0.272 Sum_probs=55.9
Q ss_pred CCeEEEEcccHHHHHHHHHHH-Hc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCCc
Q 010322 246 TARMLVIGAGKMGKLVIKHLV-AK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASEA 321 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~-~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~~ 321 (513)
..+|+|||+|.||..++..|. .. |++-+.++++++++++.++++++.. . .+.+..+.+. ++|+||.||+...
T Consensus 8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~--~--~~~~~~~~l~~~~~D~V~i~tp~~~ 83 (346)
T 3cea_A 8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVE--T--TYTNYKDMIDTENIDAIFIVAPTPF 83 (346)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCS--E--EESCHHHHHTTSCCSEEEECSCGGG
T ss_pred cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCC--c--ccCCHHHHhcCCCCCEEEEeCChHh
Confidence 458999999999999999988 53 6654678999999998888887641 1 2344555554 7999999998764
Q ss_pred c
Q 010322 322 P 322 (513)
Q Consensus 322 ~ 322 (513)
.
T Consensus 84 h 84 (346)
T 3cea_A 84 H 84 (346)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0015 Score=62.66 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=56.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcce-eec--c---cchHHhh------cCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEI-IYK--P---LSEMLSC------AAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~-~~~--~---~~~~~~~------l~~ 309 (513)
++.+++++|.|+ |.+|+.+++.|...|++ |++++|+.++.+.+.++++. .. .+. + .+++.+. ...
T Consensus 8 ~~~~k~vlITGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (254)
T 2wsb_A 8 RLDGACAAVTGAGSGIGLEICRAFAASGAR-LILIDREAAALDRAAQELGA-AVAARIVADVTDAEAMTAAAAEAEAVAP 85 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHGG-GEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhcc-cceeEEEEecCCHHHHHHHHHHHHhhCC
Confidence 467899999998 99999999999999985 99999999888777766542 11 111 1 1222222 257
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|+||++.+..
T Consensus 86 id~li~~Ag~~ 96 (254)
T 2wsb_A 86 VSILVNSAGIA 96 (254)
T ss_dssp CCEEEECCCCC
T ss_pred CcEEEECCccC
Confidence 89999998764
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0013 Score=69.85 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=51.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-----HH--HhCCcc--------eeecccchHHhhcCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAI-----CE--ELNGVE--------IIYKPLSEMLSCAAD 309 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~l-----a~--~~g~~~--------~~~~~~~~~~~~l~~ 309 (513)
.-++|.|||+|.||..++..|...|. +|+++|++++++... .. +.|... ..+....++ +.+.+
T Consensus 53 ~i~kVaVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl-~al~~ 130 (460)
T 3k6j_A 53 DVNSVAIIGGGTMGKAMAICFGLAGI-ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDF-HKLSN 130 (460)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCG-GGCTT
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCH-HHHcc
Confidence 34789999999999999999999998 599999999854321 11 111100 001122344 35789
Q ss_pred CcEEEEcCCCCc
Q 010322 310 ADVVFTSTASEA 321 (513)
Q Consensus 310 aDVVI~AT~s~~ 321 (513)
||+||+|++...
T Consensus 131 aDlVIeAVpe~~ 142 (460)
T 3k6j_A 131 CDLIVESVIEDM 142 (460)
T ss_dssp CSEEEECCCSCH
T ss_pred CCEEEEcCCCCH
Confidence 999999998753
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00078 Score=67.84 Aligned_cols=73 Identities=18% Similarity=0.318 Sum_probs=53.9
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC------cceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG------VEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~------~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
+|.|||+|.||..++..|...|..+|.++|++.++++..+..+.. ....+....+. +.+.++|+||.+.+.+.
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~ 79 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR 79 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence 589999999999999998888875699999998877654544321 01122222343 56899999999988875
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00064 Score=68.99 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=55.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCCcc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~~~ 322 (513)
.+|+|||+|.||..++..|... ++.-+.++++++++++.+++.++.. . .+.+..+.+. ++|+||.||+....
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~---~~~~~~~ll~~~~~D~V~i~tp~~~h 77 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVE-K---AYKDPHELIEDPNVDAVLVCSSTNTH 77 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCS-E---EESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCC-c---eeCCHHHHhcCCCCCEEEEcCCCcch
Confidence 4799999999999999998875 5554558999999999999988731 1 2344444444 79999999987644
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0012 Score=66.04 Aligned_cols=74 Identities=11% Similarity=0.130 Sum_probs=53.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhC------CcceeecccchHHhhcCCCcEEEEcCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELN------GVEIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g------~~~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
++|.|||+|.+|..++..|...|. .+|.++++++++++..+..+. .....+....+ .+++.++|+||.|.+.
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~ 79 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL 79 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence 379999999999999999988875 479999999988753222211 01112322334 6778999999999988
Q ss_pred Cc
Q 010322 320 EA 321 (513)
Q Consensus 320 ~~ 321 (513)
+.
T Consensus 80 ~~ 81 (294)
T 1oju_A 80 AR 81 (294)
T ss_dssp CC
T ss_pred CC
Confidence 73
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00089 Score=64.71 Aligned_cols=76 Identities=16% Similarity=0.211 Sum_probs=56.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec--c---cchHHhh-------cCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK--P---LSEMLSC-------AAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~--~---~~~~~~~-------l~~ 309 (513)
++.+++++|.|+ |.+|+.+++.|...|++ |++++|+.++.++++++++. .+.+. + .+++.+. ...
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAK-VAFSDINEAAGQQLAAELGE-RSMFVRHDVSSEADWTLVMAAVQRRLGT 80 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHHCT-TEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHcCC-ceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 467899999998 99999999999999985 99999999988888777643 12211 1 1222222 246
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|++|++.+..
T Consensus 81 id~lv~~Ag~~ 91 (253)
T 1hxh_A 81 LNVLVNNAGIL 91 (253)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 79999998764
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0011 Score=65.45 Aligned_cols=77 Identities=21% Similarity=0.384 Sum_probs=58.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec-----ccchHHhh---cCCCcEE
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK-----PLSEMLSC---AADADVV 313 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~-----~~~~~~~~---l~~aDVV 313 (513)
++.|++++|.|+ |++|+.+++.|...|+ +|++++|+.++.+.+.++++. .+.+. ..+++.+. +...|++
T Consensus 13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~iD~l 90 (291)
T 3rd5_A 13 SFAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAARTMAG-QVEVRELDLQDLSSVRRFADGVSGADVL 90 (291)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTSSS-EEEEEECCTTCHHHHHHHHHTCCCEEEE
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcC-CeeEEEcCCCCHHHHHHHHHhcCCCCEE
Confidence 678999999998 9999999999999998 599999999998887776643 12221 12233333 3467999
Q ss_pred EEcCCCCc
Q 010322 314 FTSTASEA 321 (513)
Q Consensus 314 I~AT~s~~ 321 (513)
|++.+...
T Consensus 91 v~nAg~~~ 98 (291)
T 3rd5_A 91 INNAGIMA 98 (291)
T ss_dssp EECCCCCS
T ss_pred EECCcCCC
Confidence 99988654
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0013 Score=63.68 Aligned_cols=77 Identities=16% Similarity=0.325 Sum_probs=56.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc--ceeec--c---cchHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV--EIIYK--P---LSEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~--~~~~~--~---~~~~~~~-------l 307 (513)
.+.+++++|.|+ |+||+.+++.|...|++ |++++|+.++.+++.+++... .+.+. + .+++.+. .
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGAR-VVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKF 81 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 568999999998 99999999999999985 999999999988887776321 11111 1 1222222 2
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|++|++.+..
T Consensus 82 g~id~lv~nAg~~ 94 (257)
T 3imf_A 82 GRIDILINNAAGN 94 (257)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 4789999988753
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0011 Score=65.32 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=57.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec--c---cchHHh-------hcCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK--P---LSEMLS-------CAAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~--~---~~~~~~-------~l~~ 309 (513)
++.|++++|.|+ |++|+.+++.|...|+ +|++++|+.+++++++++++.. +.+. + .+++.+ ....
T Consensus 26 ~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 103 (277)
T 3gvc_A 26 DLAGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKIGCG-AAACRVDVSDEQQIIAMVDACVAAFGG 103 (277)
T ss_dssp -CTTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCSS-CEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCc-ceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 568999999998 8999999999999999 5999999999988888877532 1111 1 122222 2347
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|++|++.+..
T Consensus 104 iD~lvnnAg~~ 114 (277)
T 3gvc_A 104 VDKLVANAGVV 114 (277)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999998764
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00053 Score=69.65 Aligned_cols=75 Identities=15% Similarity=0.285 Sum_probs=53.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCC------CeEEEEeCCHH-----HHHHHHHHhC------Ccc--eeecccchHHhh
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGC------TKMVVVNRSEE-----RVAAICEELN------GVE--IIYKPLSEMLSC 306 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~------~~V~v~nRs~~-----ra~~la~~~g------~~~--~~~~~~~~~~~~ 306 (513)
.++|+|||+|.||..++..|...|. .+|++++|+++ +.+.+.+... +.. ..+....+..+.
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA 87 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence 4689999999999999999998881 36999999987 7766654310 100 001122455566
Q ss_pred cCCCcEEEEcCCCC
Q 010322 307 AADADVVFTSTASE 320 (513)
Q Consensus 307 l~~aDVVI~AT~s~ 320 (513)
+.++|+||.|++..
T Consensus 88 ~~~aD~Vilav~~~ 101 (354)
T 1x0v_A 88 AEDADILIFVVPHQ 101 (354)
T ss_dssp HTTCSEEEECCCGG
T ss_pred HcCCCEEEEeCCHH
Confidence 78999999999863
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0016 Score=63.71 Aligned_cols=77 Identities=19% Similarity=0.310 Sum_probs=56.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee---ecccchHHhh-------cCCCc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII---YKPLSEMLSC-------AADAD 311 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~---~~~~~~~~~~-------l~~aD 311 (513)
.+.+++++|.|+ |++|+.+++.|...|++ |++++|+.++.+.+.+++...... +...+++.+. ....|
T Consensus 6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 84 (270)
T 1yde_A 6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGAR-VVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLD 84 (270)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 567899999998 99999999999999984 999999998887777765431111 1111222222 24789
Q ss_pred EEEEcCCCC
Q 010322 312 VVFTSTASE 320 (513)
Q Consensus 312 VVI~AT~s~ 320 (513)
++|++.+..
T Consensus 85 ~lv~nAg~~ 93 (270)
T 1yde_A 85 CVVNNAGHH 93 (270)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 999998754
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0011 Score=66.77 Aligned_cols=75 Identities=23% Similarity=0.322 Sum_probs=54.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCc------ceeecccchHHhhcCCCcEEEEcC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGV------EIIYKPLSEMLSCAADADVVFTST 317 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~------~~~~~~~~~~~~~l~~aDVVI~AT 317 (513)
...+|.|||+|.||..++..|...|. .+|.++|+++++++..+..+... ...+. .+..+.+.+||+||.|+
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~--~~~~~al~~aDvViia~ 82 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW--HGDYDDCRDADLVVICA 82 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEE--ECCGGGTTTCSEEEECC
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEE--cCcHHHhCCCCEEEEcC
Confidence 35789999999999999999988774 67999999988765544433210 11111 12345689999999999
Q ss_pred CCCc
Q 010322 318 ASEA 321 (513)
Q Consensus 318 ~s~~ 321 (513)
+.+.
T Consensus 83 ~~~~ 86 (316)
T 1ldn_A 83 GANQ 86 (316)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8875
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0012 Score=63.47 Aligned_cols=76 Identities=13% Similarity=0.204 Sum_probs=55.1
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee--ecccchHHhh-------cCCCcEE
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII--YKPLSEMLSC-------AADADVV 313 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~--~~~~~~~~~~-------l~~aDVV 313 (513)
+.+++++|.|+ |++|+.+++.|...|++ |++++|+.++.++++++++...+. +...+++.+. ....|++
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l 81 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEGAR-LVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGV 81 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 56899999998 99999999999999985 999999998887777765421111 1111222222 2468999
Q ss_pred EEcCCCC
Q 010322 314 FTSTASE 320 (513)
Q Consensus 314 I~AT~s~ 320 (513)
|++.+..
T Consensus 82 vn~Ag~~ 88 (245)
T 1uls_A 82 VHYAGIT 88 (245)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998754
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00074 Score=63.87 Aligned_cols=76 Identities=12% Similarity=0.262 Sum_probs=51.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.+..++|.|||+|.||..++..|...|. +|++++|+++ .+.++|+||.|++.. .
T Consensus 16 ~~~~~~I~iiG~G~mG~~la~~l~~~g~-~V~~~~~~~~------------------------~~~~aD~vi~av~~~-~ 69 (209)
T 2raf_A 16 YFQGMEITIFGKGNMGQAIGHNFEIAGH-EVTYYGSKDQ------------------------ATTLGEIVIMAVPYP-A 69 (209)
T ss_dssp ----CEEEEECCSHHHHHHHHHHHHTTC-EEEEECTTCC------------------------CSSCCSEEEECSCHH-H
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHH------------------------HhccCCEEEEcCCcH-H
Confidence 3567899999999999999999999997 5999999854 245789999999832 2
Q ss_pred CCChhhhhcCCchhhhcCCcEEEEeccC
Q 010322 323 LFLKDHVQDLPPVEAAVGGLRLFIDISV 350 (513)
Q Consensus 323 vi~~~~l~~~~~~~~~~~g~~viiDlav 350 (513)
+ .+.++.+.+. .. ..+++|++.
T Consensus 70 ~--~~v~~~l~~~---~~-~~~vi~~~~ 91 (209)
T 2raf_A 70 L--AALAKQYATQ---LK-GKIVVDITN 91 (209)
T ss_dssp H--HHHHHHTHHH---HT-TSEEEECCC
T ss_pred H--HHHHHHHHHh---cC-CCEEEEECC
Confidence 2 2333332111 12 357788764
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0013 Score=63.15 Aligned_cols=77 Identities=16% Similarity=0.269 Sum_probs=57.0
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceee--ccc---chHHhh---cCCCcE
Q 010322 242 SSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIY--KPL---SEMLSC---AADADV 312 (513)
Q Consensus 242 ~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~--~~~---~~~~~~---l~~aDV 312 (513)
.++.+++|+|.|+ |++|+.+++.|...|++ |++++|+.++.+.+.+.++.. +.+ .+. +++.+. ....|+
T Consensus 10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~id~ 87 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGSAIARLLHKLGSK-VIISGSNEEKLKSLGNALKDN-YTIEVCNLANKEECSNLISKTSNLDI 87 (249)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCSS-EEEEECCTTSHHHHHHHHHTCSCCSE
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHhccC-ccEEEcCCCCHHHHHHHHHhcCCCCE
Confidence 3578999999998 99999999999999985 999999999988888877531 221 122 222222 347899
Q ss_pred EEEcCCCC
Q 010322 313 VFTSTASE 320 (513)
Q Consensus 313 VI~AT~s~ 320 (513)
+|++.+..
T Consensus 88 li~~Ag~~ 95 (249)
T 3f9i_A 88 LVCNAGIT 95 (249)
T ss_dssp EEECCC--
T ss_pred EEECCCCC
Confidence 99988754
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00079 Score=71.93 Aligned_cols=75 Identities=15% Similarity=0.281 Sum_probs=55.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC-----Ccc---------eeecccchHHhhcCCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN-----GVE---------IIYKPLSEMLSCAADA 310 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g-----~~~---------~~~~~~~~~~~~l~~a 310 (513)
...+|.|||+|-||..++..|...|. +|++++|++++.+.+.+... +.. ..+....+..+.+.++
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~G~-~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~a 85 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADIGH-DVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHG 85 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHC
T ss_pred CCceEEEECcCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcC
Confidence 45799999999999999999999998 59999999999877765310 000 0111223455566789
Q ss_pred cEEEEcCCCC
Q 010322 311 DVVFTSTASE 320 (513)
Q Consensus 311 DVVI~AT~s~ 320 (513)
|+||.|++.|
T Consensus 86 DvviiaVptp 95 (478)
T 2y0c_A 86 DVQFIAVGTP 95 (478)
T ss_dssp SEEEECCCCC
T ss_pred CEEEEEeCCC
Confidence 9999999886
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0025 Score=60.66 Aligned_cols=77 Identities=25% Similarity=0.371 Sum_probs=56.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecc---cchHHhhcC---CCcEEEE
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKP---LSEMLSCAA---DADVVFT 315 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~---~~~~~~~l~---~aDVVI~ 315 (513)
++.+++|+|.|+ |.+|+.+++.|...|+ +|++++|+.++.+++.+++.+......+ .+++.+.+. ..|+||.
T Consensus 4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~ 82 (244)
T 1cyd_A 4 NFSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVN 82 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEE
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEEE
Confidence 568899999999 9999999999999998 4999999998887776654322111112 223334333 5799999
Q ss_pred cCCCC
Q 010322 316 STASE 320 (513)
Q Consensus 316 AT~s~ 320 (513)
+.+..
T Consensus 83 ~Ag~~ 87 (244)
T 1cyd_A 83 NAALV 87 (244)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 98754
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0015 Score=66.08 Aligned_cols=76 Identities=22% Similarity=0.233 Sum_probs=54.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC--HHHHHHHHHHhCC------cceeecccchHHhhcCCCcEEEEc
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS--EERVAAICEELNG------VEIIYKPLSEMLSCAADADVVFTS 316 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs--~~ra~~la~~~g~------~~~~~~~~~~~~~~l~~aDVVI~A 316 (513)
..++|.|||+|.||..++..|...|..+|++++++ .++++..+..+.. ....+....+ .+.+.++|+||.|
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDvVIia 85 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD-YADTADSDVVVIT 85 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC-GGGGTTCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC-HHHhCCCCEEEEe
Confidence 46789999999999999999999887569999999 5655544433311 0111221223 4568899999999
Q ss_pred CCCCc
Q 010322 317 TASEA 321 (513)
Q Consensus 317 T~s~~ 321 (513)
.|.|.
T Consensus 86 ag~p~ 90 (315)
T 3tl2_A 86 AGIAR 90 (315)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 88764
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.002 Score=62.06 Aligned_cols=77 Identities=18% Similarity=0.330 Sum_probs=55.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC--Ccceeec--cc---chHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN--GVEIIYK--PL---SEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g--~~~~~~~--~~---~~~~~~-------l 307 (513)
++.+++++|.|+ |++|+.+++.|...|++ |++++|+.++.+++++++. +..+.+. +. +++.+. .
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 82 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEGAA-VAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEAL 82 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 467899999998 99999999999999984 9999999988877776652 1111111 11 222222 2
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|++|++.+..
T Consensus 83 g~id~lv~nAg~~ 95 (247)
T 2jah_A 83 GGLDILVNNAGIM 95 (247)
T ss_dssp SCCSEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 4789999988753
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00094 Score=67.78 Aligned_cols=73 Identities=23% Similarity=0.280 Sum_probs=55.0
Q ss_pred CeEEEEcccHHHHHHHHHHH-H-cCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCCcc
Q 010322 247 ARMLVIGAGKMGKLVIKHLV-A-KGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~-~-~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~~~ 322 (513)
.+|+|||+|.||..++..+. . .+++-+.+++|++++++.++++++.. ...+++..+.+. ++|+|+.||+....
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~---~~~~~~~~~ll~~~~~D~V~i~tp~~~h 79 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLN---ATVYPNDDSLLADENVDAVLVTSWGPAH 79 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCC---CEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCC---CeeeCCHHHHhcCCCCCEEEECCCchhH
Confidence 47999999999999999998 4 35654558999999999999998720 112344455443 58999999987644
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0013 Score=64.37 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=57.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceee--cc---cchHHhh-------cCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIY--KP---LSEMLSC-------AAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~--~~---~~~~~~~-------l~~ 309 (513)
++.|++++|.|+ |++|+.+++.|...|++ |++++|+.+++++++++++.. ..+ .+ .+++.+. ...
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 85 (271)
T 3tzq_B 8 ELENKVAIITGACGGIGLETSRVLARAGAR-VVLADLPETDLAGAAASVGRG-AVHHVVDLTNEVSVRALIDFTIDTFGR 85 (271)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECTTSCHHHHHHHHCTT-CEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHhCCC-eEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 578999999998 99999999999999985 999999998888888777532 111 11 1222222 247
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|++|++.+..
T Consensus 86 id~lv~nAg~~ 96 (271)
T 3tzq_B 86 LDIVDNNAAHS 96 (271)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999998765
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0018 Score=64.90 Aligned_cols=73 Identities=27% Similarity=0.374 Sum_probs=51.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCc-----ceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGV-----EIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~-----~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
++|.|||+|.||..++..|...|. .+|+++|+++++++..+..+... ...+.. .+ .+.+.++|+||.|++.|
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~~-~~a~~~aDvVIi~~~~~ 78 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH-GG-HSELADAQVVILTAGAN 78 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE-EC-GGGGTTCSEEEECC---
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE-CC-HHHhCCCCEEEEcCCCC
Confidence 379999999999999999998885 46999999998876666555321 111211 23 35688999999999876
Q ss_pred c
Q 010322 321 A 321 (513)
Q Consensus 321 ~ 321 (513)
.
T Consensus 79 ~ 79 (304)
T 2v6b_A 79 Q 79 (304)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0021 Score=62.52 Aligned_cols=76 Identities=20% Similarity=0.337 Sum_probs=54.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh-----CCcceeec--cc---chHHhh-----
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL-----NGVEIIYK--PL---SEMLSC----- 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~-----g~~~~~~~--~~---~~~~~~----- 306 (513)
++.+++++|.|+ |++|+.+++.|...|+ +|++++|+.++.+++.+++ +. .+.+. +. +++.+.
T Consensus 10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~ 87 (267)
T 1iy8_A 10 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDA-EVLTTVADVSDEAQVEAYVTATT 87 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTC-CEEEEECCTTSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCc-eEEEEEccCCCHHHHHHHHHHHH
Confidence 467899999998 9999999999999998 4999999998876666554 22 11211 11 223222
Q ss_pred --cCCCcEEEEcCCCC
Q 010322 307 --AADADVVFTSTASE 320 (513)
Q Consensus 307 --l~~aDVVI~AT~s~ 320 (513)
....|+||++.+..
T Consensus 88 ~~~g~id~lv~nAg~~ 103 (267)
T 1iy8_A 88 ERFGRIDGFFNNAGIE 103 (267)
T ss_dssp HHHSCCSEEEECCCCC
T ss_pred HHcCCCCEEEECCCcC
Confidence 23789999998754
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0013 Score=66.80 Aligned_cols=76 Identities=12% Similarity=0.179 Sum_probs=55.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCc-----ceeecccchHHhhcCCCcEEEEcCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGV-----EIIYKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~-----~~~~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
+..+|.|||+|.||..++..|...|. .+|.++|++.++++..+..+... ...+....+.. .+.++|+||.+.|
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~-~~~daDiVIitaG 98 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYS-VSAGSKLVVITAG 98 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSC-SCSSCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHH-HhCCCCEEEEeCC
Confidence 56899999999999999999998886 57999999998776655433210 11222223433 4889999999988
Q ss_pred CCc
Q 010322 319 SEA 321 (513)
Q Consensus 319 s~~ 321 (513)
.|.
T Consensus 99 ~p~ 101 (330)
T 3ldh_A 99 ARQ 101 (330)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0041 Score=62.12 Aligned_cols=92 Identities=14% Similarity=0.256 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHh
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLS 305 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~ 305 (513)
.+...+++.+.. + .++.|++++|||. .-+|+-++..|...|++ |+++.... .++.+
T Consensus 162 Tp~gv~~lL~~~-~-i~l~Gk~vvViGRS~iVGkPla~LL~~~~AT-VTi~Hs~T--------------------~dl~~ 218 (303)
T 4b4u_A 162 TPAGIMTILKEN-N-IEIAGKHAVVVGRSAILGKPMAMMLLQANAT-VTICHSRT--------------------QNLPE 218 (303)
T ss_dssp HHHHHHHHHHHT-T-CCCTTCEEEEECCCTTTHHHHHHHHHHTTCE-EEEECTTC--------------------SSHHH
T ss_pred cHHHHHHHHHHH-C-CCCCCCEEEEEeccccccchHHHHHHhcCCE-EEEecCCC--------------------CCHHH
Confidence 444455665543 2 5789999999998 66799999999999985 88876431 13344
Q ss_pred hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 306 CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
....|||||.|+|.|.. ++.++++. | .++||+++.+
T Consensus 219 ~~~~ADIvV~A~G~p~~-i~~d~vk~---------G-avVIDVGin~ 254 (303)
T 4b4u_A 219 LVKQADIIVGAVGKAEL-IQKDWIKQ---------G-AVVVDAGFHP 254 (303)
T ss_dssp HHHTCSEEEECSCSTTC-BCGGGSCT---------T-CEEEECCCBC
T ss_pred HhhcCCeEEeccCCCCc-cccccccC---------C-CEEEEeceec
Confidence 55689999999999874 67777743 2 6899998654
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0011 Score=64.76 Aligned_cols=77 Identities=12% Similarity=0.211 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh---CC--cceeec--c---cchHHhhc----
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL---NG--VEIIYK--P---LSEMLSCA---- 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~---g~--~~~~~~--~---~~~~~~~l---- 307 (513)
.+.+++++|.|+ |++|+.+++.|...|+ +|++++|+.++.+++++++ +. ..+.+. + .+++.+.+
T Consensus 3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (278)
T 1spx_A 3 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL 81 (278)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHH
Confidence 467899999998 9999999999999998 5999999998887777665 21 111111 1 12233333
Q ss_pred ---CCCcEEEEcCCCC
Q 010322 308 ---ADADVVFTSTASE 320 (513)
Q Consensus 308 ---~~aDVVI~AT~s~ 320 (513)
.+.|+||++.+..
T Consensus 82 ~~~g~id~lv~~Ag~~ 97 (278)
T 1spx_A 82 GKFGKLDILVNNAGAA 97 (278)
T ss_dssp HHHSCCCEEEECCC--
T ss_pred HHcCCCCEEEECCCCC
Confidence 3799999998754
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0021 Score=63.10 Aligned_cols=77 Identities=18% Similarity=0.269 Sum_probs=55.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-ceeec-----ccchHHhh-------cC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-EIIYK-----PLSEMLSC-------AA 308 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~-----~~~~~~~~-------l~ 308 (513)
++.+++++|.|+ |.+|+.+++.|...|++ |++++|+.++.+++++++... .+.+. ..+++.+. ..
T Consensus 26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (276)
T 2b4q_A 26 SLAGRIALVTGGSRGIGQMIAQGLLEAGAR-VFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSA 104 (276)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCS
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 467899999998 99999999999999985 999999998887777765311 11211 11222222 34
Q ss_pred CCcEEEEcCCCC
Q 010322 309 DADVVFTSTASE 320 (513)
Q Consensus 309 ~aDVVI~AT~s~ 320 (513)
..|+||++.+..
T Consensus 105 ~iD~lvnnAg~~ 116 (276)
T 2b4q_A 105 RLDILVNNAGTS 116 (276)
T ss_dssp CCSEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 789999998754
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0021 Score=62.18 Aligned_cols=77 Identities=16% Similarity=0.266 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC----Ccceeec--cc---chHHhhcC----
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN----GVEIIYK--PL---SEMLSCAA---- 308 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g----~~~~~~~--~~---~~~~~~l~---- 308 (513)
++.+++++|.|+ |.+|+.+++.|...|+ +|++++|+.++.+++++++. +..+.+. +. +++.+.+.
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (260)
T 2z1n_A 4 GIQGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARD 82 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 467899999998 9999999999999998 59999999988777666542 1011211 11 22323222
Q ss_pred --CCcEEEEcCCCC
Q 010322 309 --DADVVFTSTASE 320 (513)
Q Consensus 309 --~aDVVI~AT~s~ 320 (513)
+.|+||++.+..
T Consensus 83 ~~gid~lv~~Ag~~ 96 (260)
T 2z1n_A 83 LGGADILVYSTGGP 96 (260)
T ss_dssp TTCCSEEEECCCCC
T ss_pred hcCCCEEEECCCCC
Confidence 489999998754
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0013 Score=67.04 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=56.2
Q ss_pred CCeEEEEcccHHHH-HHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCCc
Q 010322 246 TARMLVIGAGKMGK-LVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASEA 321 (513)
Q Consensus 246 g~~VlVIGaG~mG~-~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~~ 321 (513)
..+|+|||+|.||. .++..|... ++.-+.|++|++++++.++++++.. . +.+..+.+. +.|+|+.||+...
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~--~---~~~~~~ll~~~~~D~V~i~tp~~~ 101 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGE--P---VEGYPALLERDDVDAVYVPLPAVL 101 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSE--E---EESHHHHHTCTTCSEEEECCCGGG
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCC--C---cCCHHHHhcCCCCCEEEECCCcHH
Confidence 46899999999998 788888876 6654568999999999999998741 2 245555554 6899999998865
Q ss_pred c
Q 010322 322 P 322 (513)
Q Consensus 322 ~ 322 (513)
.
T Consensus 102 h 102 (350)
T 3rc1_A 102 H 102 (350)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0019 Score=65.76 Aligned_cols=77 Identities=14% Similarity=0.250 Sum_probs=57.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCc-----ceeecccchHHhhcCCCcEEEEcC
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGV-----EIIYKPLSEMLSCAADADVVFTST 317 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~-----~~~~~~~~~~~~~l~~aDVVI~AT 317 (513)
....+|.|||+|.||..++..|...|. .+|.++|++.++++..+..+... ...+....+. +.+.++|+||.+.
T Consensus 17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~aDiVvi~a 95 (331)
T 4aj2_A 17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANSKLVIITA 95 (331)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTEEEEEECC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCCCEEEEcc
Confidence 467899999999999999999998886 57999999998887666554311 0112112333 4589999999998
Q ss_pred CCCc
Q 010322 318 ASEA 321 (513)
Q Consensus 318 ~s~~ 321 (513)
|.|.
T Consensus 96 G~~~ 99 (331)
T 4aj2_A 96 GARQ 99 (331)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8764
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00096 Score=64.56 Aligned_cols=76 Identities=13% Similarity=0.229 Sum_probs=48.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec--c---cchHHhh-------cCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK--P---LSEMLSC-------AAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~--~---~~~~~~~-------l~~ 309 (513)
++.+++++|.|+ |++|+.+++.|...|++ |++++|+.++.++.+++++.. +.+. + .+++.+. ...
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 81 (257)
T 3tpc_A 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGAT-VLGLDLKPPAGEEPAAELGAA-VRFRNADVTNEADATAALAFAKQEFGH 81 (257)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESSCC-------------CEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHhCCc-eEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 468999999998 99999999999999985 999999988877776666431 1111 1 1222222 247
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|++|++.+..
T Consensus 82 id~lv~nAg~~ 92 (257)
T 3tpc_A 82 VHGLVNCAGTA 92 (257)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 99999998764
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0018 Score=63.41 Aligned_cols=76 Identities=22% Similarity=0.349 Sum_probs=56.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceee-----cccchHH-------hhc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIY-----KPLSEML-------SCA 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~-----~~~~~~~-------~~l 307 (513)
+++||.++|.|+ ++||+++++.|...|++ |.+++|+.++++++++++.. ..... ...++.. +..
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~-Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSI-VVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 689999999999 89999999999999995 99999999999888877631 11111 1112222 224
Q ss_pred CCCcEEEEcCCC
Q 010322 308 ADADVVFTSTAS 319 (513)
Q Consensus 308 ~~aDVVI~AT~s 319 (513)
...|++|+..|.
T Consensus 83 G~iDiLVNNAGi 94 (254)
T 4fn4_A 83 SRIDVLCNNAGI 94 (254)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 578999998774
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00072 Score=68.33 Aligned_cols=73 Identities=11% Similarity=0.127 Sum_probs=56.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCCcc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASEAP 322 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~~~ 322 (513)
..+|+|||+|.||..++..|... ++.-+.+++|++++++.++++++.. ..+.+..+.+. ++|+|+.||+....
T Consensus 5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~----~~~~~~~~ll~~~~~D~V~i~tp~~~h 80 (330)
T 3e9m_A 5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIP----VAYGSYEELCKDETIDIIYIPTYNQGH 80 (330)
T ss_dssp CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCC----CCBSSHHHHHHCTTCSEEEECCCGGGH
T ss_pred eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCC----ceeCCHHHHhcCCCCCEEEEcCCCHHH
Confidence 35899999999999999999885 5554458999999999999988631 12345555554 79999999998754
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0018 Score=63.01 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=56.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC---cceeec--c---cchHHhh-------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG---VEIIYK--P---LSEMLSC------- 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~---~~~~~~--~---~~~~~~~------- 306 (513)
++.|++++|.|+ |++|+.+++.|...|+ +|++++|+.++.+++++++.. ..+.+. + .+++.+.
T Consensus 7 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 85 (262)
T 3pk0_A 7 DLQGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEE 85 (262)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 578999999998 9999999999999999 599999999988777766521 111111 1 1222222
Q ss_pred cCCCcEEEEcCCCC
Q 010322 307 AADADVVFTSTASE 320 (513)
Q Consensus 307 l~~aDVVI~AT~s~ 320 (513)
....|++|++.+..
T Consensus 86 ~g~id~lvnnAg~~ 99 (262)
T 3pk0_A 86 FGGIDVVCANAGVF 99 (262)
T ss_dssp HSCCSEEEECCCCC
T ss_pred hCCCCEEEECCCCC
Confidence 34799999998754
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0023 Score=60.81 Aligned_cols=74 Identities=26% Similarity=0.439 Sum_probs=53.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC---Ccceeec-----ccchHHhhc-------CC
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN---GVEIIYK-----PLSEMLSCA-------AD 309 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g---~~~~~~~-----~~~~~~~~l-------~~ 309 (513)
+++++|.|+ |++|+.+++.|...|++ |++++|+.++.+.+++++. +..+.+. ..+++.+.+ ..
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGYA-LALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGD 80 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence 688999998 99999999999999985 9999999988877665542 1112211 122333333 36
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|++|++.+..
T Consensus 81 id~li~~Ag~~ 91 (235)
T 3l77_A 81 VDVVVANAGLG 91 (235)
T ss_dssp CSEEEECCCCC
T ss_pred CCEEEECCccc
Confidence 89999987754
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0012 Score=62.83 Aligned_cols=76 Identities=17% Similarity=0.264 Sum_probs=54.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh----CCcceeec-----ccchHHhhc-----
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL----NGVEIIYK-----PLSEMLSCA----- 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~----g~~~~~~~-----~~~~~~~~l----- 307 (513)
++.+++++|.|+ |.+|+.+++.|...|+ +|++++|+.++.+.+.+.+ +. .+.+. ..+++.+.+
T Consensus 4 ~~~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~ 81 (248)
T 2pnf_A 4 KLQGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTSGERAKAVAEEIANKYGV-KAHGVEMNLLSEESINKAFEEIYN 81 (248)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhhcCC-ceEEEEccCCCHHHHHHHHHHHHH
Confidence 467899999998 9999999999999998 5999999988876665543 22 11111 112233222
Q ss_pred --CCCcEEEEcCCCC
Q 010322 308 --ADADVVFTSTASE 320 (513)
Q Consensus 308 --~~aDVVI~AT~s~ 320 (513)
.+.|+||.+.+..
T Consensus 82 ~~~~~d~vi~~Ag~~ 96 (248)
T 2pnf_A 82 LVDGIDILVNNAGIT 96 (248)
T ss_dssp HSSCCSEEEECCCCC
T ss_pred hcCCCCEEEECCCCC
Confidence 4799999998754
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0011 Score=65.09 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=55.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceee-----cccchHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIY-----KPLSEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~-----~~~~~~~~~-------l 307 (513)
++.|++++|.|+ |++|+.+++.|...|++ |++++|+.++.+++++++.. ..+.+ ...+++.+. .
T Consensus 29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 107 (276)
T 3r1i_A 29 DLSGKRALITGASTGIGKKVALAYAEAGAQ-VAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGEL 107 (276)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 578999999998 99999999999999985 99999998888777766521 01111 112223222 2
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|++|++.+..
T Consensus 108 g~iD~lvnnAg~~ 120 (276)
T 3r1i_A 108 GGIDIAVCNAGIV 120 (276)
T ss_dssp SCCSEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 3789999988764
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0013 Score=64.70 Aligned_cols=76 Identities=17% Similarity=0.306 Sum_probs=56.9
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec--c---cchHHh-------hcCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK--P---LSEMLS-------CAAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~--~---~~~~~~-------~l~~ 309 (513)
++.|++++|.|+ |++|+.+++.|...|+ +|++++|+.++++++...++.. +.+. + .+++.+ ....
T Consensus 2 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 79 (281)
T 3zv4_A 2 KLTGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSAERLRELEVAHGGN-AVGVVGDVRSLQDQKRAAERCLAAFGK 79 (281)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTBTT-EEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CcCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHcCCc-EEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 357899999998 9999999999999998 5999999999998888877532 1111 1 122222 2347
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|++|++.+..
T Consensus 80 iD~lvnnAg~~ 90 (281)
T 3zv4_A 80 IDTLIPNAGIW 90 (281)
T ss_dssp CCEEECCCCCC
T ss_pred CCEEEECCCcC
Confidence 89999998753
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0011 Score=64.56 Aligned_cols=76 Identities=20% Similarity=0.248 Sum_probs=55.9
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec--c---cchHHhh-------cCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK--P---LSEMLSC-------AAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~--~---~~~~~~~-------l~~ 309 (513)
++.+++++|.|+ |++|+.+++.|...|+ +|++++|+.++.++++++++. .+.+. + .+++.+. ...
T Consensus 3 ~l~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (263)
T 2a4k_A 3 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEA-EAIAVVADVSDPKAVEAVFAEALEEFGR 80 (263)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCS-SEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC-ceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 467899999998 9999999999999998 599999999988887776642 11111 1 1222222 246
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|++|++.+..
T Consensus 81 iD~lvnnAg~~ 91 (263)
T 2a4k_A 81 LHGVAHFAGVA 91 (263)
T ss_dssp CCEEEEGGGGT
T ss_pred CcEEEECCCCC
Confidence 79999998754
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00071 Score=72.23 Aligned_cols=76 Identities=12% Similarity=0.159 Sum_probs=55.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHc-CCCeEEEEeCCHH----HHHHHHHHhCCc----------------ceeecccchH
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAK-GCTKMVVVNRSEE----RVAAICEELNGV----------------EIIYKPLSEM 303 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~-G~~~V~v~nRs~~----ra~~la~~~g~~----------------~~~~~~~~~~ 303 (513)
+-++|.|||+|-||..++..|... |..+|+++|++++ +.+.+.+..... ...+....+
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd- 95 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD- 95 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-
Confidence 347899999999999999999999 8724999999999 877665421000 001111223
Q ss_pred HhhcCCCcEEEEcCCCCc
Q 010322 304 LSCAADADVVFTSTASEA 321 (513)
Q Consensus 304 ~~~l~~aDVVI~AT~s~~ 321 (513)
.+.+.++|+||.|++.|.
T Consensus 96 ~ea~~~aDvViiaVptp~ 113 (478)
T 3g79_A 96 FSRISELDAVTLAIQTPF 113 (478)
T ss_dssp GGGGGGCSEEEECCCCCC
T ss_pred HHHHhcCCEEEEecCCch
Confidence 456789999999999874
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0024 Score=62.68 Aligned_cols=76 Identities=22% Similarity=0.303 Sum_probs=54.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh---CCcceeec--cc---chHHhh-------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL---NGVEIIYK--PL---SEMLSC------- 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~---g~~~~~~~--~~---~~~~~~------- 306 (513)
++.+++++|.|+ |.+|+.+++.|...|+ +|++++|+.++.+++++++ +. .+.+. +. +++.+.
T Consensus 19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~ 96 (277)
T 2rhc_B 19 TQDSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVER 96 (277)
T ss_dssp CTTSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999998 9999999999999998 4999999998877666654 22 11111 11 222222
Q ss_pred cCCCcEEEEcCCCC
Q 010322 307 AADADVVFTSTASE 320 (513)
Q Consensus 307 l~~aDVVI~AT~s~ 320 (513)
....|+||++.+..
T Consensus 97 ~g~iD~lv~~Ag~~ 110 (277)
T 2rhc_B 97 YGPVDVLVNNAGRP 110 (277)
T ss_dssp TCSCSEEEECCCCC
T ss_pred hCCCCEEEECCCCC
Confidence 34789999998754
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0023 Score=62.09 Aligned_cols=77 Identities=16% Similarity=0.339 Sum_probs=55.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-ceeec--c---cchHHhhc-------C
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-EIIYK--P---LSEMLSCA-------A 308 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~--~---~~~~~~~l-------~ 308 (513)
.+.+++|+|.|+ |.+|+.+++.|...|+ +|++++|+.++...+.++++.. .+.+. + .+++.+.+ .
T Consensus 13 ~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 91 (278)
T 2bgk_A 13 RLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHG 91 (278)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467899999998 9999999999999998 5999999988877776665421 11211 1 12233322 3
Q ss_pred CCcEEEEcCCCC
Q 010322 309 DADVVFTSTASE 320 (513)
Q Consensus 309 ~aDVVI~AT~s~ 320 (513)
..|+||++.+..
T Consensus 92 ~id~li~~Ag~~ 103 (278)
T 2bgk_A 92 KLDIMFGNVGVL 103 (278)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCccc
Confidence 789999998754
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0013 Score=63.08 Aligned_cols=76 Identities=16% Similarity=0.295 Sum_probs=54.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh---CCcceeec--c---cchHHhhc------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL---NGVEIIYK--P---LSEMLSCA------ 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~---g~~~~~~~--~---~~~~~~~l------ 307 (513)
++.+++|+|.|+ |.+|+.+++.|...|+ +|++++|+.++.+.+.+++ +. .+.+. + .+++.+.+
T Consensus 8 ~~~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~ 85 (255)
T 1fmc_A 8 RLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhCC-ceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 467899999998 9999999999999998 5999999988876666554 21 11111 1 12233332
Q ss_pred -CCCcEEEEcCCCC
Q 010322 308 -ADADVVFTSTASE 320 (513)
Q Consensus 308 -~~aDVVI~AT~s~ 320 (513)
.+.|+||.+.+..
T Consensus 86 ~~~~d~vi~~Ag~~ 99 (255)
T 1fmc_A 86 LGKVDILVNNAGGG 99 (255)
T ss_dssp HSSCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 3799999998764
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.003 Score=61.11 Aligned_cols=77 Identities=14% Similarity=0.237 Sum_probs=55.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC--Ccceeec--cc---chHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN--GVEIIYK--PL---SEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g--~~~~~~~--~~---~~~~~~-------l 307 (513)
++.+++++|.|+ |.+|+.+++.|...|+ +|++++|+.++.+.+.+++. +..+.+. +. +++.+. .
T Consensus 6 ~l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (260)
T 2ae2_A 6 NLEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHF 84 (260)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467899999998 9999999999999998 49999999988776666542 1111111 11 222222 2
Q ss_pred -CCCcEEEEcCCCC
Q 010322 308 -ADADVVFTSTASE 320 (513)
Q Consensus 308 -~~aDVVI~AT~s~ 320 (513)
...|++|++.+..
T Consensus 85 ~g~id~lv~~Ag~~ 98 (260)
T 2ae2_A 85 HGKLNILVNNAGIV 98 (260)
T ss_dssp TTCCCEEEECCCCC
T ss_pred CCCCCEEEECCCCC
Confidence 5799999998754
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0017 Score=65.31 Aligned_cols=72 Identities=21% Similarity=0.273 Sum_probs=51.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee---------ecccchHHhhcCCCcEEE
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII---------YKPLSEMLSCAADADVVF 314 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~---------~~~~~~~~~~l~~aDVVI 314 (513)
...++|+|||+|.||..++..|...|. +|+++ +++++++.+.+. |. ... +....+. +.+..+|+||
T Consensus 17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~~~~~~~i~~~-g~-~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi 91 (318)
T 3hwr_A 17 FQGMKVAIMGAGAVGCYYGGMLARAGH-EVILI-ARPQHVQAIEAT-GL-RLETQSFDEQVKVSASSDP-SAVQGADLVL 91 (318)
T ss_dssp ---CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-CCHHHHHHHHHH-CE-EEECSSCEEEECCEEESCG-GGGTTCSEEE
T ss_pred ccCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE-EcHhHHHHHHhC-Ce-EEEcCCCcEEEeeeeeCCH-HHcCCCCEEE
Confidence 467899999999999999999999997 59999 888888777654 21 110 1111233 2357899999
Q ss_pred EcCCCC
Q 010322 315 TSTASE 320 (513)
Q Consensus 315 ~AT~s~ 320 (513)
.|+++.
T Consensus 92 lavk~~ 97 (318)
T 3hwr_A 92 FCVKST 97 (318)
T ss_dssp ECCCGG
T ss_pred EEcccc
Confidence 999986
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0021 Score=61.77 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=55.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeec--c---cchHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK--P---LSEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~--~---~~~~~~~-------l 307 (513)
.+.+++|+|.|+ |++|+.+++.|...|++ |++++|+.++.+.+.+++.. ..+.+. + .+++.+. .
T Consensus 6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T 3qiv_A 6 RFENKVGIVTGSGGGIGQAYAEALAREGAA-VVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEF 84 (253)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 468999999999 99999999999999985 99999999988777776521 111111 1 1222222 2
Q ss_pred CCCcEEEEcCCC
Q 010322 308 ADADVVFTSTAS 319 (513)
Q Consensus 308 ~~aDVVI~AT~s 319 (513)
...|+||++.+.
T Consensus 85 g~id~li~~Ag~ 96 (253)
T 3qiv_A 85 GGIDYLVNNAAI 96 (253)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 478999999876
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00083 Score=66.30 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=52.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC---Ccceee-----cccchHHhh-------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN---GVEIIY-----KPLSEMLSC------- 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g---~~~~~~-----~~~~~~~~~------- 306 (513)
++.|++++|.|+ |++|+.+++.|...|++ |++++|+.++.+++++++. +..+.+ ...+++.+.
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 108 (281)
T 4dry_A 30 SGEGRIALVTGGGTGVGRGIAQALSAEGYS-VVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAE 108 (281)
T ss_dssp ----CEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 568999999998 99999999999999995 9999999988877776552 111111 111222222
Q ss_pred cCCCcEEEEcCCCC
Q 010322 307 AADADVVFTSTASE 320 (513)
Q Consensus 307 l~~aDVVI~AT~s~ 320 (513)
....|++|++.+..
T Consensus 109 ~g~iD~lvnnAG~~ 122 (281)
T 4dry_A 109 FARLDLLVNNAGSN 122 (281)
T ss_dssp HSCCSEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 24789999998764
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00028 Score=66.50 Aligned_cols=74 Identities=22% Similarity=0.352 Sum_probs=51.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.++|+|+|+ |.+|+.+++.|...|. +|++++|++.+...+...+......+...+++.+.+.++|+||.+.+..
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~ 78 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNPG 78 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC-
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcCC
Confidence 368999997 9999999999999997 5999999987653221111000011222345667788999999998664
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0019 Score=61.89 Aligned_cols=74 Identities=16% Similarity=0.257 Sum_probs=54.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec--c---cchHHhh-------cCCCc
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK--P---LSEMLSC-------AADAD 311 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~--~---~~~~~~~-------l~~aD 311 (513)
.+++++|.|+ |++|+.+++.|...|++ |++++|+.++++++.+.++. .+.+. + .+++.+. ....|
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 79 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGHQ-VSMMGRRYQRLQQQELLLGN-AVIGIVADLAHHEDVDVAFAAAVEWGGLPE 79 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHGG-GEEEEECCTTSHHHHHHHHHHHHHHHCSCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhcC-CceEEECCCCCHHHHHHHHHHHHHhcCCCc
Confidence 4689999998 99999999999999985 99999999998888877643 12211 1 1222222 24789
Q ss_pred EEEEcCCCC
Q 010322 312 VVFTSTASE 320 (513)
Q Consensus 312 VVI~AT~s~ 320 (513)
++|++.+..
T Consensus 80 ~lvnnAg~~ 88 (235)
T 3l6e_A 80 LVLHCAGTG 88 (235)
T ss_dssp EEEEECCCC
T ss_pred EEEECCCCC
Confidence 999988764
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0018 Score=64.97 Aligned_cols=70 Identities=26% Similarity=0.275 Sum_probs=50.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec------ccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK------PLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~------~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+|+|||+|.||.+++..|. .|. +|++++|+.++++.+.+. |. .+... ......+....+|+||.||++.
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~-~V~~~~r~~~~~~~l~~~-G~-~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~ 78 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYH-DVTVVTRRQEQAAAIQSE-GI-RLYKGGEEFRADCSADTSINSDFDLLVVTVKQH 78 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCHHHHHHHHHH-CE-EEEETTEEEEECCEEESSCCSCCSEEEECCCGG
T ss_pred CEEEEECCCHHHHHHHHHHh-cCC-ceEEEECCHHHHHHHHhC-Cc-eEecCCCeecccccccccccCCCCEEEEEeCHH
Confidence 68999999999999999999 886 699999999888777653 31 11100 0000023456899999999873
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0014 Score=67.04 Aligned_cols=78 Identities=19% Similarity=0.270 Sum_probs=55.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEe----------CC---------HHHHHHHHHHhC----Ccceeeccc
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVN----------RS---------EERVAAICEELN----GVEIIYKPL 300 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~n----------Rs---------~~ra~~la~~~g----~~~~~~~~~ 300 (513)
+.+.+|+|+|+|++|..++++|...|+.+|+++| |. ..|++.+++.+. ...+...+.
T Consensus 34 L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 113 (346)
T 1y8q_A 34 LRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTE 113 (346)
T ss_dssp HHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECS
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEec
Confidence 3578999999999999999999999999999995 32 135656555543 212222211
Q ss_pred ---chHHhhcCCCcEEEEcCCCCc
Q 010322 301 ---SEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 301 ---~~~~~~l~~aDVVI~AT~s~~ 321 (513)
+...+.+.++|+||+|+.+..
T Consensus 114 ~~~~~~~~~~~~~dvVv~~~d~~~ 137 (346)
T 1y8q_A 114 DIEKKPESFFTQFDAVCLTCCSRD 137 (346)
T ss_dssp CGGGCCHHHHTTCSEEEEESCCHH
T ss_pred ccCcchHHHhcCCCEEEEcCCCHH
Confidence 113455789999999987653
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0014 Score=63.89 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=55.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh----CCcceee-----cccchHHhh------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL----NGVEIIY-----KPLSEMLSC------ 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~----g~~~~~~-----~~~~~~~~~------ 306 (513)
++.|++++|.|+ |++|+.+++.|...|++ |++++|+.++++++++++ +. .+.+ ...+++.+.
T Consensus 17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~ 94 (266)
T 4egf_A 17 RLDGKRALITGATKGIGADIARAFAAAGAR-LVLSGRDVSELDAARRALGEQFGT-DVHTVAIDLAEPDAPAELARRAAE 94 (266)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTSTTHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHH
Confidence 468999999998 99999999999999995 999999998887766554 22 1111 112222222
Q ss_pred -cCCCcEEEEcCCCCc
Q 010322 307 -AADADVVFTSTASEA 321 (513)
Q Consensus 307 -l~~aDVVI~AT~s~~ 321 (513)
....|++|++.+...
T Consensus 95 ~~g~id~lv~nAg~~~ 110 (266)
T 4egf_A 95 AFGGLDVLVNNAGISH 110 (266)
T ss_dssp HHTSCSEEEEECCCCC
T ss_pred HcCCCCEEEECCCcCC
Confidence 347899999987643
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0014 Score=65.24 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=51.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHc-----C-CCeEEEEeCCHHHHHHHHHHhCCcceeecc------------cchHHhhcC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAK-----G-CTKMVVVNRSEERVAAICEELNGVEIIYKP------------LSEMLSCAA 308 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~-----G-~~~V~v~nRs~~ra~~la~~~g~~~~~~~~------------~~~~~~~l~ 308 (513)
.+|+|||+|.||..++..|... | . +|++++| .++.+.+.++.|. .+.. .++ .+.+.
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~-~V~~~~r-~~~~~~l~~~~g~---~~~~~~~~~~~~~~~~~~~-~~~~~ 82 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLL-EVSWIAR-GAHLEAIRAAGGL---RVVTPSRDFLARPTCVTDN-PAEVG 82 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSE-EEEEECC-HHHHHHHHHHTSE---EEECSSCEEEECCSEEESC-HHHHC
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCC-CEEEEEc-HHHHHHHHhcCCe---EEEeCCCCeEEecceEecC-ccccC
Confidence 4799999999999999999988 7 6 6999999 7888777663331 1111 012 23457
Q ss_pred CCcEEEEcCCCCc
Q 010322 309 DADVVFTSTASEA 321 (513)
Q Consensus 309 ~aDVVI~AT~s~~ 321 (513)
.+|+||.|+++..
T Consensus 83 ~~D~vil~vk~~~ 95 (317)
T 2qyt_A 83 TVDYILFCTKDYD 95 (317)
T ss_dssp CEEEEEECCSSSC
T ss_pred CCCEEEEecCccc
Confidence 8999999999865
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0016 Score=63.73 Aligned_cols=77 Identities=22% Similarity=0.314 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC----cceeec--c---cchHHhh------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG----VEIIYK--P---LSEMLSC------ 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~----~~~~~~--~---~~~~~~~------ 306 (513)
.+.+++++|.|+ |.+|+.+++.|...|++ |++++|+.++.+.+.+++.. ..+.+. + .+++.+.
T Consensus 29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 107 (279)
T 1xg5_A 29 RWRDRLALVTGASGGIGAAVARALVQQGLK-VVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS 107 (279)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 367899999998 99999999999999984 99999999887776655421 011111 1 1222222
Q ss_pred -cCCCcEEEEcCCCC
Q 010322 307 -AADADVVFTSTASE 320 (513)
Q Consensus 307 -l~~aDVVI~AT~s~ 320 (513)
....|+||++.+..
T Consensus 108 ~~g~iD~vi~~Ag~~ 122 (279)
T 1xg5_A 108 QHSGVDICINNAGLA 122 (279)
T ss_dssp HHCCCSEEEECCCCC
T ss_pred hCCCCCEEEECCCCC
Confidence 24799999998754
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00043 Score=63.75 Aligned_cols=73 Identities=16% Similarity=0.290 Sum_probs=51.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee---ecccchHHhhcCCCcEEEEcCCCCc
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII---YKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~---~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
+++|+|+|+ |.+|+.+++.|...|. +|++++|++.+...+. ....... +...+++.+.+.++|+||.+.+...
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~ 79 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEG--PRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRN 79 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSS--CCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeChhhccccc--CCceEEEEecCCCHHHHHHHHcCCCEEEECccCCC
Confidence 478999999 9999999999999997 5999999976542210 0111111 1122345667789999999987654
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0017 Score=64.63 Aligned_cols=77 Identities=19% Similarity=0.308 Sum_probs=56.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceee--cc---cchHHhhc-------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIY--KP---LSEMLSCA------- 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~--~~---~~~~~~~l------- 307 (513)
++.|++|+|.|+ |++|+.+++.|...|++ |++++|+.++++++.+++.. ..+.+ .+ .+++.+.+
T Consensus 28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 106 (301)
T 3tjr_A 28 GFDGRAAVVTGGASGIGLATATEFARRGAR-LVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLL 106 (301)
T ss_dssp CSTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhC
Confidence 578999999999 99999999999999985 99999999988777766521 11111 11 12232222
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|+||++.+..
T Consensus 107 g~id~lvnnAg~~ 119 (301)
T 3tjr_A 107 GGVDVVFSNAGIV 119 (301)
T ss_dssp SSCSEEEECCCCC
T ss_pred CCCCEEEECCCcC
Confidence 4789999998864
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0015 Score=63.39 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=56.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeec--c---cchHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK--P---LSEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~--~---~~~~~~~-------l 307 (513)
++.|++++|.|+ |++|+.+++.|...|++ |++++|+.++.+++++++.. ..+.+. + .+++.+. .
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 87 (256)
T 3gaf_A 9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGAS-VVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQF 87 (256)
T ss_dssp CCTTCEEEECSCSSHHHHHHHHHHHHHTCE-EEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 578999999998 99999999999999995 99999999888777765521 111111 1 1222222 2
Q ss_pred CCCcEEEEcCCCCc
Q 010322 308 ADADVVFTSTASEA 321 (513)
Q Consensus 308 ~~aDVVI~AT~s~~ 321 (513)
...|++|++.+...
T Consensus 88 g~id~lv~nAg~~~ 101 (256)
T 3gaf_A 88 GKITVLVNNAGGGG 101 (256)
T ss_dssp SCCCEEEECCCCCC
T ss_pred CCCCEEEECCCCCC
Confidence 47899999987643
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0036 Score=61.14 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=55.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh---CCcceeec--cc---chHHhh-------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL---NGVEIIYK--PL---SEMLSC------- 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~---g~~~~~~~--~~---~~~~~~------- 306 (513)
++.+++++|.|+ |++|+.+++.|...|++ |++++|+.++.+++.+++ +. .+.+. +. +++.+.
T Consensus 18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~ 95 (273)
T 1ae1_A 18 SLKGTTALVTGGSKGIGYAIVEELAGLGAR-VYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHV 95 (273)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999998 99999999999999985 999999998877666554 21 11111 11 222222
Q ss_pred c-CCCcEEEEcCCCC
Q 010322 307 A-ADADVVFTSTASE 320 (513)
Q Consensus 307 l-~~aDVVI~AT~s~ 320 (513)
. ...|++|++.+..
T Consensus 96 ~~g~id~lv~nAg~~ 110 (273)
T 1ae1_A 96 FDGKLNILVNNAGVV 110 (273)
T ss_dssp TTSCCCEEEECCCCC
T ss_pred cCCCCcEEEECCCCC
Confidence 2 5789999998764
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0029 Score=60.73 Aligned_cols=76 Identities=12% Similarity=0.245 Sum_probs=54.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh---CCcceeec--c---cchHHhhc------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL---NGVEIIYK--P---LSEMLSCA------ 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~---g~~~~~~~--~---~~~~~~~l------ 307 (513)
++.+++|+|.|+ |.+|+.+++.|...|+ +|++++|+.++...+.+.+ +. .+.+. + .+++.+.+
T Consensus 10 ~l~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (260)
T 3awd_A 10 RLDNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGH-DVSSVVMDVTNTESVQNAVRSVHEQ 87 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHHHHHHH
Confidence 467899999998 9999999999999998 5999999988776665544 21 11211 1 12233322
Q ss_pred -CCCcEEEEcCCCC
Q 010322 308 -ADADVVFTSTASE 320 (513)
Q Consensus 308 -~~aDVVI~AT~s~ 320 (513)
...|+||.+.+..
T Consensus 88 ~~~id~vi~~Ag~~ 101 (260)
T 3awd_A 88 EGRVDILVACAGIC 101 (260)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 3789999998754
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0019 Score=63.27 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=56.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeec-----ccchH-------Hhhc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK-----PLSEM-------LSCA 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~-----~~~~~-------~~~l 307 (513)
++.||.++|.|+ ++||+++++.|...|++ |.+++|+.+++++.++++.. ...... ..++. .+..
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~-Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGAR-VILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEG 84 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 689999999999 99999999999999995 99999999988777766521 111111 11122 2224
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|++|++.|..
T Consensus 85 G~iDiLVNNAG~~ 97 (255)
T 4g81_D 85 IHVDILINNAGIQ 97 (255)
T ss_dssp CCCCEEEECCCCC
T ss_pred CCCcEEEECCCCC
Confidence 5789999987754
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00099 Score=69.50 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=52.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc------------ceeecccchHHhhcCCCcEEE
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV------------EIIYKPLSEMLSCAADADVVF 314 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~------------~~~~~~~~~~~~~l~~aDVVI 314 (513)
++|.|||+|.||..++..|.. |. +|++++|++++.+.+.+..... ...+....+..+.+.++|+||
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~-~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvi 78 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QN-EVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVI 78 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TS-EEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHhC-CC-EEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEE
Confidence 379999999999999999998 85 6999999999987765431100 000111234445567899999
Q ss_pred EcCCCCc
Q 010322 315 TSTASEA 321 (513)
Q Consensus 315 ~AT~s~~ 321 (513)
.|++.+.
T Consensus 79 iavpt~~ 85 (402)
T 1dlj_A 79 IATPTNY 85 (402)
T ss_dssp ECCCCCE
T ss_pred EecCCCc
Confidence 9999873
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0016 Score=65.44 Aligned_cols=70 Identities=13% Similarity=0.234 Sum_probs=51.8
Q ss_pred CeEEEEcccHHHH-HHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhc-CCCcEEEEcCCCCc
Q 010322 247 ARMLVIGAGKMGK-LVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCA-ADADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGaG~mG~-~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l-~~aDVVI~AT~s~~ 321 (513)
.+|+|||+|.||. .++..|... +++ |++++++++++++++++++.. ..+.+.. +.+ .++|+|+.||+...
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~~~~~-l~v~d~~~~~~~~~a~~~g~~-~~~~~~~---~~l~~~~D~V~i~tp~~~ 75 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQWPDIE-LVLCTRNPKVLGTLATRYRVS-ATCTDYR---DVLQYGVDAVMIHAATDV 75 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEE-EEEECSCHHHHHHHHHHTTCC-CCCSSTT---GGGGGCCSEEEECSCGGG
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHcCCC-ccccCHH---HHhhcCCCEEEEECCchh
Confidence 3799999999998 588888765 554 569999999999999988741 1022222 223 57999999998654
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0025 Score=61.17 Aligned_cols=76 Identities=12% Similarity=0.217 Sum_probs=54.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc---chHHh---hcCCCcEEEE
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL---SEMLS---CAADADVVFT 315 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~---~~~~~---~l~~aDVVI~ 315 (513)
.+.+++++|.|+ |.+|+.+++.|...|+ +|++++|+.++.+++. +++.......+. +++.+ .....|+||+
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv~ 80 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELE-KYPGIQTRVLDVTKKKQIDQFANEVERLDVLFN 80 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGG-GSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH-hccCceEEEeeCCCHHHHHHHHHHhCCCCEEEE
Confidence 467899999998 9999999999999998 5999999988776555 432211111111 22222 2467899999
Q ss_pred cCCCC
Q 010322 316 STASE 320 (513)
Q Consensus 316 AT~s~ 320 (513)
+.+..
T Consensus 81 ~Ag~~ 85 (246)
T 2ag5_A 81 VAGFV 85 (246)
T ss_dssp CCCCC
T ss_pred CCccC
Confidence 98764
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.003 Score=61.63 Aligned_cols=76 Identities=12% Similarity=0.199 Sum_probs=55.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh---CCcceeec--cc---chHHhh-------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL---NGVEIIYK--PL---SEMLSC------- 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~---g~~~~~~~--~~---~~~~~~------- 306 (513)
++.+++|+|.|+ |.+|+.+++.|...|++ |++++|+.++.+.+.+++ +. .+.+. +. +++.+.
T Consensus 28 ~l~~k~vlITGasggIG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~ 105 (272)
T 1yb1_A 28 SVTGEIVLITGAGHGIGRLTAYEFAKLKSK-LVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDIYSSAKKVKAE 105 (272)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEEcCHHHHHHHHHHHHhcCC-eEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 578999999998 99999999999999985 999999988877666554 21 11211 11 222222
Q ss_pred cCCCcEEEEcCCCC
Q 010322 307 AADADVVFTSTASE 320 (513)
Q Consensus 307 l~~aDVVI~AT~s~ 320 (513)
....|+||++.+..
T Consensus 106 ~g~iD~li~~Ag~~ 119 (272)
T 1yb1_A 106 IGDVSILVNNAGVV 119 (272)
T ss_dssp TCCCSEEEECCCCC
T ss_pred CCCCcEEEECCCcC
Confidence 34789999998764
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0016 Score=62.66 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=41.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL 290 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~ 290 (513)
++.+++|+|.|+ |.+|+.+++.|...|+ +|++++|+.++.+++.+++
T Consensus 4 ~~~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~ 51 (264)
T 2pd6_A 4 RLRSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRAAAQETVRLL 51 (264)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTC
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHH
Confidence 567899999998 9999999999999998 5999999998877766554
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00043 Score=65.05 Aligned_cols=70 Identities=21% Similarity=0.338 Sum_probs=51.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcce---eecc-cchHHhhcCCCcEEEEcCCCCc
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEI---IYKP-LSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~---~~~~-~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
++|+|+|+ |.+|+.+++.|...|. +|++++|++++...+ ..... .+.. .+++.+.+.++|+||.+.+...
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~----~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~ 75 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQVPQY----NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGG 75 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGGSCCC----TTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTT
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccchhhc----CCceEEEecccCCHHHHHHHHcCCCEEEECCcCCC
Confidence 37999996 9999999999999997 599999998765332 11111 1222 3456677889999999988754
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0025 Score=60.34 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=54.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcce-e--ecccchHHhh-------cCCCcEE
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEI-I--YKPLSEMLSC-------AADADVV 313 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~-~--~~~~~~~~~~-------l~~aDVV 313 (513)
.+++|+|.|+ |.+|+.+++.|...|+ +|++++|+.++.+.+.++++.... . +...+++.+. ....|+|
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l 82 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGY-RVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSAL 82 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4688999998 9999999999999998 599999999888777776542111 1 1111222222 2478999
Q ss_pred EEcCCCC
Q 010322 314 FTSTASE 320 (513)
Q Consensus 314 I~AT~s~ 320 (513)
|++.+..
T Consensus 83 i~~Ag~~ 89 (234)
T 2ehd_A 83 VNNAGVG 89 (234)
T ss_dssp EECCCCC
T ss_pred EECCCcC
Confidence 9998754
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.002 Score=61.55 Aligned_cols=77 Identities=8% Similarity=0.137 Sum_probs=55.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-ceeec--cc---chHHhh-------cC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-EIIYK--PL---SEMLSC-------AA 308 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~--~~---~~~~~~-------l~ 308 (513)
++.+++++|.|+ |.+|+.+++.|...|++ |++++|+.++.+.+.+.+... .+.+. +. +++.+. ..
T Consensus 3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (251)
T 1zk4_A 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAK-VMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFG 81 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 567899999998 99999999999999985 999999998887776665310 11111 11 222222 23
Q ss_pred CCcEEEEcCCCC
Q 010322 309 DADVVFTSTASE 320 (513)
Q Consensus 309 ~aDVVI~AT~s~ 320 (513)
..|+||++.+..
T Consensus 82 ~id~li~~Ag~~ 93 (251)
T 1zk4_A 82 PVSTLVNNAGIA 93 (251)
T ss_dssp SCCEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 689999998754
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.002 Score=63.12 Aligned_cols=77 Identities=18% Similarity=0.333 Sum_probs=56.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeec-----ccchHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK-----PLSEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~-----~~~~~~~~-------l 307 (513)
++.|++++|.|+ |++|+.+++.|...|+ +|++++|+.++++++.+++.. ..+.+. ..+++.+. .
T Consensus 23 ~l~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 101 (271)
T 4ibo_A 23 DLGGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQG 101 (271)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence 578999999998 9999999999999998 599999999988777766521 112221 11222222 2
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|++|++.+..
T Consensus 102 g~iD~lv~nAg~~ 114 (271)
T 4ibo_A 102 IDVDILVNNAGIQ 114 (271)
T ss_dssp CCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 4789999998764
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0018 Score=62.68 Aligned_cols=77 Identities=23% Similarity=0.355 Sum_probs=55.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeec-----ccchHHhhc------C
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK-----PLSEMLSCA------A 308 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~-----~~~~~~~~l------~ 308 (513)
++.+++++|.|+ |++|+.+++.|...|++ |++++|+.++++++++++.. ..+.+. ..+++.+.+ .
T Consensus 4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g 82 (252)
T 3h7a_A 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFT-VFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHA 82 (252)
T ss_dssp -CCSCEEEEECCSSHHHHHHHHHHHHTTCE-EEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence 467899999998 89999999999999994 99999999888777776521 111111 112222222 4
Q ss_pred CCcEEEEcCCCC
Q 010322 309 DADVVFTSTASE 320 (513)
Q Consensus 309 ~aDVVI~AT~s~ 320 (513)
..|++|++.+..
T Consensus 83 ~id~lv~nAg~~ 94 (252)
T 3h7a_A 83 PLEVTIFNVGAN 94 (252)
T ss_dssp CEEEEEECCCCC
T ss_pred CceEEEECCCcC
Confidence 679999998864
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0033 Score=62.84 Aligned_cols=76 Identities=21% Similarity=0.341 Sum_probs=52.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHh--CCc---ceeecccchHHhhcCCCcEEEEcCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEEL--NGV---EIIYKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~--g~~---~~~~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
...+|+|||+|.||..++..|...|. .+|++++|+.++++..+..+ +.. ...+....+ .+.+.++|+||.|++
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~aD~Vii~v~ 84 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDADMVVITAG 84 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTCSEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCC-HHHhCCCCEEEECCC
Confidence 34689999999999999999998885 36999999987765222211 100 112211113 345789999999998
Q ss_pred CCc
Q 010322 319 SEA 321 (513)
Q Consensus 319 s~~ 321 (513)
.+.
T Consensus 85 ~~~ 87 (319)
T 1lld_A 85 PRQ 87 (319)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0024 Score=62.49 Aligned_cols=75 Identities=19% Similarity=0.316 Sum_probs=54.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceee--ccc---chHHhh-------cCC
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIY--KPL---SEMLSC-------AAD 309 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~--~~~---~~~~~~-------l~~ 309 (513)
.+++++|.|+ |++|+.+++.|...|++ |++++|+.++++++++++.. ..+.+ .+. +++.+. ...
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 81 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGAK-ILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGR 81 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5789999998 99999999999999985 99999999988887776521 11111 111 222222 347
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|++|++.+..
T Consensus 82 iD~lVnnAG~~ 92 (264)
T 3tfo_A 82 IDVLVNNAGVM 92 (264)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999998764
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0027 Score=60.90 Aligned_cols=75 Identities=17% Similarity=0.329 Sum_probs=53.2
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeC-CHHHHHHHHHHh---CCcceeec--cc---chHHhh-------
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNR-SEERVAAICEEL---NGVEIIYK--PL---SEMLSC------- 306 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nR-s~~ra~~la~~~---g~~~~~~~--~~---~~~~~~------- 306 (513)
+.+++++|.|+ |++|+.+++.|...|++ |++++| +.++.+++++++ +. .+.+. +. +++.+.
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQGAN-VVVNYAGNEQKANEVVDEIKKLGS-DAIAVRADVANAEDVTNMVKQTVDV 79 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46899999998 99999999999999985 888888 887776666554 21 11111 11 222222
Q ss_pred cCCCcEEEEcCCCC
Q 010322 307 AADADVVFTSTASE 320 (513)
Q Consensus 307 l~~aDVVI~AT~s~ 320 (513)
....|++|++.+..
T Consensus 80 ~g~id~lv~nAg~~ 93 (246)
T 2uvd_A 80 FGQVDILVNNAGVT 93 (246)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 24789999998754
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0028 Score=63.97 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=54.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCC------cceeecccchHHhhcCCCcEEEEcC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNG------VEIIYKPLSEMLSCAADADVVFTST 317 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~------~~~~~~~~~~~~~~l~~aDVVI~AT 317 (513)
...+|.|||+|.+|..++..|...|. .+|.++|+++++++..+..+.. ....+.. +..+++.++|+||.+.
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~--~~~~a~~~aDvVvi~a 82 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA--GEYSDCHDADLVVICA 82 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE--CCGGGGTTCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe--CCHHHhCCCCEEEECC
Confidence 45789999999999999999988775 6799999998777544433321 1112221 3356689999999999
Q ss_pred CCCc
Q 010322 318 ASEA 321 (513)
Q Consensus 318 ~s~~ 321 (513)
+.|.
T Consensus 83 g~~~ 86 (317)
T 3d0o_A 83 GAAQ 86 (317)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8874
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0022 Score=63.23 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=57.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc--ceeec-----ccchHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV--EIIYK-----PLSEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~--~~~~~-----~~~~~~~~-------l 307 (513)
++.|++++|.|+ |+||+.+++.|...|++ |++++|+.++++++++++... .+.+. ..+++... .
T Consensus 5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (280)
T 3tox_A 5 RLEGKIAIVTGASSGIGRAAALLFAREGAK-VVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRF 83 (280)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 578999999998 99999999999999995 999999999988888776321 12221 11222222 2
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|++|++.+..
T Consensus 84 g~iD~lvnnAg~~ 96 (280)
T 3tox_A 84 GGLDTAFNNAGAL 96 (280)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 4789999998753
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0025 Score=62.09 Aligned_cols=70 Identities=21% Similarity=0.346 Sum_probs=52.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.++|+|+|+|.+|+.+++.|...|. +|++++|++.+...+... + ......+..++. +.++|+||.+.+..
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-~-~~~~~~D~~d~~--~~~~d~vi~~a~~~ 74 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRAS-G-AEPLLWPGEEPS--LDGVTHLLISTAPD 74 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHHT-T-EEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhhC-C-CeEEEecccccc--cCCCCEEEECCCcc
Confidence 4789999999999999999999998 599999998877555432 2 111222333433 78999999998754
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0026 Score=60.29 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=52.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-ceeeccc---chHHhhc----CCCcEEEEcC
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-EIIYKPL---SEMLSCA----ADADVVFTST 317 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~~~---~~~~~~l----~~aDVVI~AT 317 (513)
++|+|.|+ |++|+.+++.|...|++ |++++|+.++.+++.++++.. .....+. +++.+.+ ...|+||++.
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~A 80 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGKA-TYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSA 80 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTCC-EEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECC
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeC
Confidence 57999998 99999999999999986 999999999998888776431 1111122 2233322 2349999998
Q ss_pred CCC
Q 010322 318 ASE 320 (513)
Q Consensus 318 ~s~ 320 (513)
+..
T Consensus 81 g~~ 83 (230)
T 3guy_A 81 GSG 83 (230)
T ss_dssp CCC
T ss_pred CcC
Confidence 754
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0013 Score=69.99 Aligned_cols=73 Identities=22% Similarity=0.343 Sum_probs=53.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHH------------hC---CcceeecccchHHhhcCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAK--GCTKMVVVNRSEERVAAICEE------------LN---GVEIIYKPLSEMLSCAAD 309 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~--G~~~V~v~nRs~~ra~~la~~------------~g---~~~~~~~~~~~~~~~l~~ 309 (513)
++|.|||+|.||..++..|... |. +|+++||++++.+.+.+. +. ..... ...+..+.+.+
T Consensus 6 mkI~VIG~G~mG~~lA~~La~~g~G~-~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~--~t~~~~e~~~~ 82 (467)
T 2q3e_A 6 KKICCIGAGYVGGPTCSVIAHMCPEI-RVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLF--FSTNIDDAIKE 82 (467)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTS-EEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEE--EESCHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCCC-EEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEE--EECCHHHHHhc
Confidence 5899999999999999999998 56 599999999988765321 00 00111 12344556678
Q ss_pred CcEEEEcCCCCcc
Q 010322 310 ADVVFTSTASEAP 322 (513)
Q Consensus 310 aDVVI~AT~s~~~ 322 (513)
+|+||.|++.|..
T Consensus 83 aDvViiaVptp~~ 95 (467)
T 2q3e_A 83 ADLVFISVNTPTK 95 (467)
T ss_dssp CSEEEECCCCCBC
T ss_pred CCEEEEEcCCchh
Confidence 9999999987653
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.003 Score=61.30 Aligned_cols=77 Identities=17% Similarity=0.264 Sum_probs=55.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeec--cc---chHHh-------hc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK--PL---SEMLS-------CA 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~--~~---~~~~~-------~l 307 (513)
++.+++++|.|+ |++|+.+++.|...|++ |++++|+.++.+++++++.. ..+.+. +. +++.. ..
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (262)
T 1zem_A 4 KFNGKVCLVTGAGGNIGLATALRLAEEGTA-IALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 82 (262)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 467899999998 99999999999999985 99999999888777666521 111111 11 22222 23
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|++|++.+..
T Consensus 83 g~id~lv~nAg~~ 95 (262)
T 1zem_A 83 GKIDFLFNNAGYQ 95 (262)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 4789999998754
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0029 Score=60.34 Aligned_cols=73 Identities=14% Similarity=0.243 Sum_probs=52.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh----CCcceeec--c---cchHHhhc-------C
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL----NGVEIIYK--P---LSEMLSCA-------A 308 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~----g~~~~~~~--~---~~~~~~~l-------~ 308 (513)
+++++|.|+ |.+|+.+++.|...|+ +|++++|+.++.+.+.+++ +. .+.+. + .+++.+.+ .
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSAETLEETARTHWHAYAD-KVLRVRADVADEGDVNAAIAATMEQFG 79 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHSTTTGG-GEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 578999998 9999999999999998 5999999998887776655 21 11111 1 12233322 3
Q ss_pred CCcEEEEcCCCC
Q 010322 309 DADVVFTSTASE 320 (513)
Q Consensus 309 ~aDVVI~AT~s~ 320 (513)
..|+||++.+..
T Consensus 80 ~id~li~~Ag~~ 91 (250)
T 2cfc_A 80 AIDVLVNNAGIT 91 (250)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 789999998754
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0014 Score=66.99 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=55.9
Q ss_pred CCeEEEEcccHHHHHHHHHHH-Hc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCCc
Q 010322 246 TARMLVIGAGKMGKLVIKHLV-AK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASEA 321 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~-~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~~ 321 (513)
..+|+|||+|.||...+..|. .. +++-+.|+++++++++.++++++.. ...+.+..+.+. +.|+|+.||+...
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~---~~~~~~~~~ll~~~~~D~V~i~tp~~~ 99 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIE---AKDYNDYHDLINDKDVEVVIITASNEA 99 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCC---CEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCC---CeeeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 458999999999999999998 43 6654568999999999999998721 112344444443 6899999998765
Q ss_pred c
Q 010322 322 P 322 (513)
Q Consensus 322 ~ 322 (513)
.
T Consensus 100 h 100 (357)
T 3ec7_A 100 H 100 (357)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0015 Score=65.92 Aligned_cols=72 Identities=13% Similarity=0.103 Sum_probs=55.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHcC---CCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCCc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKG---CTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G---~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~~ 321 (513)
.+++|||+|.||...+..|...+ ++-+.|++|+++++++++++++.. .. +.+..+.+. +.|+|+.||+...
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~-~~---~~~~~~ll~~~~vD~V~i~tp~~~ 78 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIP-KA---YGSYEELAKDPNVEVAYVGTQHPQ 78 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCS-CE---ESSHHHHHHCTTCCEEEECCCGGG
T ss_pred cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCC-cc---cCCHHHHhcCCCCCEEEECCCcHH
Confidence 47999999999999999887654 344678999999999999998741 12 344444443 7999999998764
Q ss_pred c
Q 010322 322 P 322 (513)
Q Consensus 322 ~ 322 (513)
.
T Consensus 79 H 79 (334)
T 3ohs_X 79 H 79 (334)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0025 Score=61.71 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=55.7
Q ss_pred CCCCCeEEEEcc-c-HHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC---cceeec--cc---chHHhh------
Q 010322 243 SHATARMLVIGA-G-KMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG---VEIIYK--PL---SEMLSC------ 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G-~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~---~~~~~~--~~---~~~~~~------ 306 (513)
.+.+++++|.|+ | ++|+.+++.|...|++ |++++|+.++..++.+++.. ..+.+. +. +++.+.
T Consensus 19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 97 (266)
T 3o38_A 19 LLKGKVVLVTAAAGTGIGSTTARRALLEGAD-VVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVE 97 (266)
T ss_dssp TTTTCEEEESSCSSSSHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHCCCE-EEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 578999999999 8 7999999999999985 99999999888777766521 112211 11 222222
Q ss_pred -cCCCcEEEEcCCCC
Q 010322 307 -AADADVVFTSTASE 320 (513)
Q Consensus 307 -l~~aDVVI~AT~s~ 320 (513)
....|+||++.+..
T Consensus 98 ~~g~id~li~~Ag~~ 112 (266)
T 3o38_A 98 KAGRLDVLVNNAGLG 112 (266)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HhCCCcEEEECCCcC
Confidence 24789999998754
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0039 Score=62.00 Aligned_cols=76 Identities=20% Similarity=0.190 Sum_probs=55.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh----CCcceeec---c---cchHHhhcCCCc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL----NGVEIIYK---P---LSEMLSCAADAD 311 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~----g~~~~~~~---~---~~~~~~~l~~aD 311 (513)
.+.+++|+|.|+ |.+|+.+++.|...|. +|++++|+..+...+...+ +. .+.+. + .+.+.+.+.++|
T Consensus 8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~~~d 85 (342)
T 1y1p_A 8 LPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQKRWDAKYPG-RFETAVVEDMLKQGAYDEVIKGAA 85 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHSTT-TEEEEECSCTTSTTTTTTTTTTCS
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCcccHHHHHHHhhccCCC-ceEEEEecCCcChHHHHHHHcCCC
Confidence 357899999999 9999999999999998 5999999988765555432 11 12211 2 233455567899
Q ss_pred EEEEcCCCC
Q 010322 312 VVFTSTASE 320 (513)
Q Consensus 312 VVI~AT~s~ 320 (513)
+||.+.+..
T Consensus 86 ~vih~A~~~ 94 (342)
T 1y1p_A 86 GVAHIASVV 94 (342)
T ss_dssp EEEECCCCC
T ss_pred EEEEeCCCC
Confidence 999998754
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.003 Score=63.52 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=50.2
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC-------cceee---cccchHHhhcCCCcEEEEc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG-------VEIIY---KPLSEMLSCAADADVVFTS 316 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~-------~~~~~---~~~~~~~~~l~~aDVVI~A 316 (513)
++|+|||+|.||.+++..|...|. +|++++|++ . +.+.+. |. ....+ ....+..+....+|+||.|
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~-~-~~i~~~-Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVila 78 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGH-CVSVVSRSD-Y-ETVKAK-GIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLC 78 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTC-EEEEECSTT-H-HHHHHH-CEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCh-H-HHHHhC-CcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEe
Confidence 589999999999999999999987 699999986 2 455443 20 01111 1123444444589999999
Q ss_pred CCCCc
Q 010322 317 TASEA 321 (513)
Q Consensus 317 T~s~~ 321 (513)
|++..
T Consensus 79 vK~~~ 83 (320)
T 3i83_A 79 IKVVE 83 (320)
T ss_dssp CCCCT
T ss_pred cCCCC
Confidence 99865
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0015 Score=65.20 Aligned_cols=35 Identities=26% Similarity=0.572 Sum_probs=31.5
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHHcCCCeEEEEeCCHH
Q 010322 246 TARMLVIG-AGKMGKLVIKHLVAKGCTKMVVVNRSEE 281 (513)
Q Consensus 246 g~~VlVIG-aG~mG~~ia~~L~~~G~~~V~v~nRs~~ 281 (513)
.++|+||| +|.||..++..|...|. +|++++|+++
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~-~V~~~~~~~~ 56 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGY-PISILDREDW 56 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCG
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCC-eEEEEECCcc
Confidence 46899999 99999999999999998 5999999864
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0029 Score=61.15 Aligned_cols=47 Identities=19% Similarity=0.480 Sum_probs=41.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL 290 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~ 290 (513)
++.+++++|.|+ |++|+.+++.|...|+ +|++++|+.++++++++++
T Consensus 4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~ 51 (250)
T 3nyw_A 4 EKQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEI 51 (250)
T ss_dssp -CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHH
Confidence 467899999998 9999999999999999 5999999999887777654
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0025 Score=62.82 Aligned_cols=76 Identities=17% Similarity=0.278 Sum_probs=54.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh----CCcceeec--cc---chHHhh------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL----NGVEIIYK--PL---SEMLSC------ 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~----g~~~~~~~--~~---~~~~~~------ 306 (513)
++.+++++|.|+ |.+|+.+++.|...|++ |++++|+.++...+.+++ +. .+.+. +. +++.+.
T Consensus 23 ~l~~k~vlITGasggiG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~ 100 (302)
T 1w6u_A 23 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQ-CVIASRKMDVLKATAEQISSQTGN-KVHAIQCDVRDPDMVQNTVSELIK 100 (302)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHSS-CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhcCC-ceEEEEeCCCCHHHHHHHHHHHHH
Confidence 467899999998 99999999999999984 999999988876666554 32 12211 11 222222
Q ss_pred -cCCCcEEEEcCCCC
Q 010322 307 -AADADVVFTSTASE 320 (513)
Q Consensus 307 -l~~aDVVI~AT~s~ 320 (513)
....|+||.+.+..
T Consensus 101 ~~g~id~li~~Ag~~ 115 (302)
T 1w6u_A 101 VAGHPNIVINNAAGN 115 (302)
T ss_dssp HTCSCSEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 24679999998753
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0022 Score=61.96 Aligned_cols=76 Identities=17% Similarity=0.264 Sum_probs=53.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcce--eecccchHHhh-------cCCCcE
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEI--IYKPLSEMLSC-------AADADV 312 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~--~~~~~~~~~~~-------l~~aDV 312 (513)
++.+++++|.|+ |.+|+.+++.|...|+ +|++++|+.++ +++.++++...+ .+...+++.+. ....|+
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~ 80 (256)
T 2d1y_A 3 LFAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEG-KEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDV 80 (256)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTH-HHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhH-HHHHHHhhCCEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence 467899999998 9999999999999998 59999999877 666665531101 11111222222 347899
Q ss_pred EEEcCCCC
Q 010322 313 VFTSTASE 320 (513)
Q Consensus 313 VI~AT~s~ 320 (513)
+|++.+..
T Consensus 81 lv~~Ag~~ 88 (256)
T 2d1y_A 81 LVNNAAIA 88 (256)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998754
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.003 Score=61.08 Aligned_cols=77 Identities=18% Similarity=0.299 Sum_probs=54.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC--Ccceee--ccc---chHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN--GVEIIY--KPL---SEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g--~~~~~~--~~~---~~~~~~-------l 307 (513)
.+.+++++|.|+ |.+|+.+++.|...|+ +|++++|+.++.+++.+++. +..+.. .+. +++.+. .
T Consensus 11 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 89 (260)
T 2zat_A 11 PLENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLH 89 (260)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 567899999998 9999999999999998 59999999888766655541 111111 111 222222 2
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|++|++.+..
T Consensus 90 g~iD~lv~~Ag~~ 102 (260)
T 2zat_A 90 GGVDILVSNAAVN 102 (260)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 4799999998753
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0021 Score=65.79 Aligned_cols=77 Identities=13% Similarity=0.233 Sum_probs=55.4
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCc---ceeecccchHHhhcCCCcEEEEcCC
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGV---EIIYKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~---~~~~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
+.+.+|.|||+ |.+|..++..+...|. .+|.++|++.++++..+..+... ...+....+..+.+.++|+||.|.|
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG 85 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG 85 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence 35789999998 9999999999998885 57999999988776544433210 0111122456677899999999987
Q ss_pred CC
Q 010322 319 SE 320 (513)
Q Consensus 319 s~ 320 (513)
.|
T Consensus 86 ~p 87 (343)
T 3fi9_A 86 AP 87 (343)
T ss_dssp --
T ss_pred CC
Confidence 76
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0058 Score=58.93 Aligned_cols=47 Identities=21% Similarity=0.397 Sum_probs=41.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL 290 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~ 290 (513)
.+.|++++|.|+ |++|+.+++.|...|++ |++++|+.++.+++++.+
T Consensus 9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~ 56 (252)
T 3f1l_A 9 LLNDRIILVTGASDGIGREAAMTYARYGAT-VILLGRNEEKLRQVASHI 56 (252)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHH
Confidence 468999999998 99999999999999994 999999998887776654
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0036 Score=61.72 Aligned_cols=77 Identities=19% Similarity=0.329 Sum_probs=55.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc--ceeec--c---cchHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV--EIIYK--P---LSEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~--~~~~~--~---~~~~~~~-------l 307 (513)
++.+++++|.|+ |++|+.+++.|...|+ +|++++|+.++++++++++... .+.+. + .+++.+. .
T Consensus 25 ~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (283)
T 3v8b_A 25 NQPSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKF 103 (283)
T ss_dssp --CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 467899999998 9999999999999999 5999999999988888776321 11111 1 1222222 3
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|++|++.+..
T Consensus 104 g~iD~lVnnAg~~ 116 (283)
T 3v8b_A 104 GHLDIVVANAGIN 116 (283)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 4789999988753
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00084 Score=64.16 Aligned_cols=72 Identities=11% Similarity=0.166 Sum_probs=52.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc---chHHhh-cCCCcEEEEcCCCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL---SEMLSC-AADADVVFTSTASE 320 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~---~~~~~~-l~~aDVVI~AT~s~ 320 (513)
..++|+|+|+|.+|+.+++.|...|. |+++++++++.+.+. .+ ..+..-+. +.+.++ +.++|.||.||+..
T Consensus 8 ~~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~~~~~~~~--~~-~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d 82 (234)
T 2aef_A 8 KSRHVVICGWSESTLECLRELRGSEV--FVLAEDENVRKKVLR--SG-ANFVHGDPTRVSDLEKANVRGARAVIVDLESD 82 (234)
T ss_dssp --CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGGGHHHHHH--TT-CEEEESCTTCHHHHHHTTCTTCSEEEECCSCH
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCe--EEEEECCHHHHHHHh--cC-CeEEEcCCCCHHHHHhcCcchhcEEEEcCCCc
Confidence 35689999999999999999998886 899999998886655 33 21111111 223333 78999999999875
Q ss_pred c
Q 010322 321 A 321 (513)
Q Consensus 321 ~ 321 (513)
.
T Consensus 83 ~ 83 (234)
T 2aef_A 83 S 83 (234)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0015 Score=69.54 Aligned_cols=74 Identities=18% Similarity=0.394 Sum_probs=56.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecc--cchHHhh-cCCCcEEEEcCCCC
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKP--LSEMLSC-AADADVVFTSTASE 320 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~--~~~~~~~-l~~aDVVI~AT~s~ 320 (513)
.++|+|+|+|.+|..+++.|...|. +|+++++++++++.+.+.++...+.-.. .+-+.++ +..||++|.+|++.
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~-~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~D 79 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENN-DITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTD 79 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTE-EEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCCh
Confidence 4689999999999999999998887 5999999999998888887532111011 1223333 68999999999884
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0026 Score=71.36 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=51.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH-------h---CCcc--------eeecccchHHhhcC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEE-------L---NGVE--------IIYKPLSEMLSCAA 308 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~-------~---g~~~--------~~~~~~~~~~~~l~ 308 (513)
++|.|||+|.||..++..|...|.. |+++|+++++++..... + |... ..+....+. +.+.
T Consensus 313 ~kV~VIGaG~MG~~iA~~la~aG~~-V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~ 390 (725)
T 2wtb_A 313 KKVAIIGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFR 390 (725)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCC-EEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGT
T ss_pred cEEEEEcCCHhhHHHHHHHHhCCCE-EEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHC
Confidence 5799999999999999999999985 99999999877543221 0 1000 001122333 4578
Q ss_pred CCcEEEEcCCCCc
Q 010322 309 DADVVFTSTASEA 321 (513)
Q Consensus 309 ~aDVVI~AT~s~~ 321 (513)
++|+||+|++...
T Consensus 391 ~aDlVIeaVpe~~ 403 (725)
T 2wtb_A 391 DVDMVIEAVIENI 403 (725)
T ss_dssp TCSEEEECCCSCH
T ss_pred CCCEEEEcCcCCH
Confidence 9999999998764
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0031 Score=61.83 Aligned_cols=76 Identities=26% Similarity=0.410 Sum_probs=55.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-----ceeec--cc---chHHhh-----
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-----EIIYK--PL---SEMLSC----- 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-----~~~~~--~~---~~~~~~----- 306 (513)
++.+++++|.|+ |.+|+.+++.|...|++ |++++|+.++.++.++++... .+.+. +. +++.+.
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 86 (281)
T 3svt_A 8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAS-VMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVT 86 (281)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 578999999998 99999999999999995 999999998887777665311 11111 11 222222
Q ss_pred --cCCCcEEEEcCCC
Q 010322 307 --AADADVVFTSTAS 319 (513)
Q Consensus 307 --l~~aDVVI~AT~s 319 (513)
....|++|++.+.
T Consensus 87 ~~~g~id~lv~nAg~ 101 (281)
T 3svt_A 87 AWHGRLHGVVHCAGG 101 (281)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHcCCCCEEEECCCc
Confidence 2478999999875
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0039 Score=61.09 Aligned_cols=76 Identities=16% Similarity=0.291 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh----CCcceeec--c---cchHHhh------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL----NGVEIIYK--P---LSEMLSC------ 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~----g~~~~~~~--~---~~~~~~~------ 306 (513)
.+.|++++|.|+ |++|+.+++.|...|+ +|++++|+.++..+.++++ +. .+.+. + .+++.+.
T Consensus 24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~ 101 (277)
T 4fc7_A 24 LLRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGR-RCLPLSMDVRAPPAVMAAVDQALK 101 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSS-CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHH
Confidence 468999999999 8999999999999999 5999999988876666554 32 11111 1 1222222
Q ss_pred -cCCCcEEEEcCCCC
Q 010322 307 -AADADVVFTSTASE 320 (513)
Q Consensus 307 -l~~aDVVI~AT~s~ 320 (513)
....|++|++.+..
T Consensus 102 ~~g~id~lv~nAg~~ 116 (277)
T 4fc7_A 102 EFGRIDILINCAAGN 116 (277)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HcCCCCEEEECCcCC
Confidence 34789999998743
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0019 Score=63.12 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=55.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec-----ccchHHhhc-------CCC
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK-----PLSEMLSCA-------ADA 310 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~-----~~~~~~~~l-------~~a 310 (513)
+.+++|+|.|+ |.+|+.+++.|...|+ +|++++|+.++..++...++.. +.+. ..+++.+.+ ...
T Consensus 3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 80 (281)
T 3m1a_A 3 ESAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLVAAYPDR-AEAISLDVTDGERIDVVAADVLARYGRV 80 (281)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHCTTT-EEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCC-ceEEEeeCCCHHHHHHHHHHHHHhCCCC
Confidence 46789999998 9999999999999998 5999999998888887776531 2211 112222222 378
Q ss_pred cEEEEcCCCC
Q 010322 311 DVVFTSTASE 320 (513)
Q Consensus 311 DVVI~AT~s~ 320 (513)
|+||++.+..
T Consensus 81 d~lv~~Ag~~ 90 (281)
T 3m1a_A 81 DVLVNNAGRT 90 (281)
T ss_dssp SEEEECCCCE
T ss_pred CEEEECCCcC
Confidence 9999998754
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0022 Score=62.86 Aligned_cols=77 Identities=12% Similarity=0.228 Sum_probs=55.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-----ceeec--cc---chHHhh-----
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-----EIIYK--PL---SEMLSC----- 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-----~~~~~--~~---~~~~~~----- 306 (513)
.+.+++++|.|+ |++|+.+++.|...|+ +|++++|+.++.+++++++... .+.+. +. +++.+.
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (280)
T 1xkq_A 3 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 81 (280)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHH
Confidence 467899999998 9999999999999998 4999999998887776654210 11111 11 222222
Q ss_pred --cCCCcEEEEcCCCC
Q 010322 307 --AADADVVFTSTASE 320 (513)
Q Consensus 307 --l~~aDVVI~AT~s~ 320 (513)
....|+||++.+..
T Consensus 82 ~~~g~iD~lv~nAg~~ 97 (280)
T 1xkq_A 82 KQFGKIDVLVNNAGAA 97 (280)
T ss_dssp HHHSCCCEEEECCCCC
T ss_pred HhcCCCCEEEECCCCC
Confidence 24789999998754
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0068 Score=57.81 Aligned_cols=47 Identities=23% Similarity=0.439 Sum_probs=41.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL 290 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~ 290 (513)
.+.|++++|.|+ |++|+.+++.|...|++ |++++|+.++.+++.+++
T Consensus 11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~ 58 (247)
T 3i1j_A 11 LLKGRVILVTGAARGIGAAAARAYAAHGAS-VVLLGRTEASLAEVSDQI 58 (247)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEecCHHHHHHHHHHH
Confidence 468999999998 99999999999999985 999999999887777654
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0034 Score=61.13 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=53.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeC-CHHHHHHHHHHh----CCccee-----eccc----chHHhh-
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNR-SEERVAAICEEL----NGVEII-----YKPL----SEMLSC- 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nR-s~~ra~~la~~~----g~~~~~-----~~~~----~~~~~~- 306 (513)
.+.+++++|.|+ |++|+.+++.|...|+ +|++++| +.++.+++++++ +. .+. +... +++.+.
T Consensus 8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~ 85 (276)
T 1mxh_A 8 ASECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARAG-SAVLCKGDLSLSSSLLDCCEDII 85 (276)
T ss_dssp ---CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTT-CEEEEECCCSSSTTHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHhcCC-ceEEEeccCCCccccHHHHHHHH
Confidence 356899999998 9999999999999998 5999999 888877776654 32 111 1122 222222
Q ss_pred ------cCCCcEEEEcCCCC
Q 010322 307 ------AADADVVFTSTASE 320 (513)
Q Consensus 307 ------l~~aDVVI~AT~s~ 320 (513)
....|++|++.+..
T Consensus 86 ~~~~~~~g~id~lv~nAg~~ 105 (276)
T 1mxh_A 86 DCSFRAFGRCDVLVNNASAY 105 (276)
T ss_dssp HHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHhcCCCCEEEECCCCC
Confidence 23789999998754
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0022 Score=62.78 Aligned_cols=49 Identities=27% Similarity=0.483 Sum_probs=44.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG 292 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~ 292 (513)
++.|++++|.|+ |++|+.+++.|...|++ |++++|+.++.++++++++.
T Consensus 27 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~-Vi~~~r~~~~~~~~~~~~~~ 76 (281)
T 3ppi_A 27 QFEGASAIVSGGAGGLGEATVRRLHADGLG-VVIADLAAEKGKALADELGN 76 (281)
T ss_dssp GGTTEEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCT
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHhCC
Confidence 468999999999 99999999999999995 99999999999888888754
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.004 Score=60.06 Aligned_cols=73 Identities=19% Similarity=0.352 Sum_probs=52.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh---CCcceeec--c---cchHHhh-------cCC
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL---NGVEIIYK--P---LSEMLSC-------AAD 309 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~---g~~~~~~~--~---~~~~~~~-------l~~ 309 (513)
+++++|.|+ |.+|+.+++.|...|+ +|++++|+.++.+++++++ +. .+.+. + .+++.+. ...
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 79 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTLGG 79 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 578999998 9999999999999998 5999999998877766654 22 11111 1 1223222 247
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|++|++.+..
T Consensus 80 id~lv~nAg~~ 90 (256)
T 1geg_A 80 FDVIVNNAGVA 90 (256)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 99999998753
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0026 Score=63.25 Aligned_cols=77 Identities=18% Similarity=0.281 Sum_probs=56.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc---ceeec--cc---chHHh-------h
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV---EIIYK--PL---SEMLS-------C 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~---~~~~~--~~---~~~~~-------~ 306 (513)
++.+++++|.|+ |++|+.+++.|...|+ +|++++|+.++++++++++... .+.+. +. +++.+ .
T Consensus 38 ~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 116 (293)
T 3rih_A 38 DLSARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDA 116 (293)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 578999999998 9999999999999999 5999999998887877776321 11111 11 12222 2
Q ss_pred cCCCcEEEEcCCCC
Q 010322 307 AADADVVFTSTASE 320 (513)
Q Consensus 307 l~~aDVVI~AT~s~ 320 (513)
....|++|++.+..
T Consensus 117 ~g~iD~lvnnAg~~ 130 (293)
T 3rih_A 117 FGALDVVCANAGIF 130 (293)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 34789999998754
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0021 Score=60.10 Aligned_cols=71 Identities=18% Similarity=0.283 Sum_probs=50.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchH-HhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEM-LSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~-~~~l~~aDVVI~AT~s~ 320 (513)
++|+|+|+ |.+|+.+++.|...|. +|+++.|++++...+... .......+..+. .+.+.++|+||.+.+..
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~--~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~ 73 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQKAADRLGA--TVATLVKEPLVLTEADLDSVDAVVDALSVP 73 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHTCT--TSEEEECCGGGCCHHHHTTCSEEEECCCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecccccccccCC--CceEEecccccccHhhcccCCEEEECCccC
Confidence 36999999 9999999999999997 599999998877544221 111111112111 15678999999998874
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00025 Score=69.55 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=48.8
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh-CCcc--eeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL-NGVE--IIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~-g~~~--~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
++|+|||+|.||..++..|...|. +|++++|++++.+.+.... .+.. ..+ ..++ .+.+.++|+||.|++...
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~~-~~~~-~~~~~~~d~vi~~v~~~~ 75 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNLVETDGSIFNESL-TAND-PDFLATSDLLLVTLKAWQ 75 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEEECTTSCEEEEEE-EESC-HHHHHTCSEEEECSCGGG
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCccceeeEEEEcCCCceeeeee-eecC-ccccCCCCEEEEEecHHh
Confidence 379999999999999999999997 6999999976553321110 0000 001 1122 244568999999998864
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0029 Score=64.52 Aligned_cols=74 Identities=18% Similarity=0.094 Sum_probs=53.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHc--------CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhc--CCCcEEE
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAK--------GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCA--ADADVVF 314 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~--------G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l--~~aDVVI 314 (513)
+.-+|.|||+|.||+..+..+... +++-+.|++++++++++++++++.. .. +.+..+.+ .+.|+|+
T Consensus 24 kkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~-~~---y~d~~ell~~~~iDaV~ 99 (393)
T 4fb5_A 24 KPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFE-KA---TADWRALIADPEVDVVS 99 (393)
T ss_dssp CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCS-EE---ESCHHHHHHCTTCCEEE
T ss_pred CCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCC-ee---cCCHHHHhcCCCCcEEE
Confidence 445899999999999887766542 4555678999999999999999742 12 33444444 4689999
Q ss_pred EcCCCCcc
Q 010322 315 TSTASEAP 322 (513)
Q Consensus 315 ~AT~s~~~ 322 (513)
-||+....
T Consensus 100 IatP~~~H 107 (393)
T 4fb5_A 100 VTTPNQFH 107 (393)
T ss_dssp ECSCGGGH
T ss_pred ECCChHHH
Confidence 99998654
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0023 Score=64.60 Aligned_cols=73 Identities=16% Similarity=0.263 Sum_probs=52.4
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCC------cceeecccchHHhhcCCCcEEEEcCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNG------VEIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~------~~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
++|.|||+|.||..++..|...|. .+|.++|+++++++..+..+.. ....+.. .+..+.+.++|+||.|.|.
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~-~~~~~a~~~aDvVii~ag~ 79 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTG-TNDYGPTEDSDVCIITAGL 79 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEE-ESSSGGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEE-CCCHHHhCCCCEEEECCCC
Confidence 479999999999999999998875 5799999998877544433321 0112211 1335678899999999888
Q ss_pred C
Q 010322 320 E 320 (513)
Q Consensus 320 ~ 320 (513)
|
T Consensus 80 ~ 80 (314)
T 3nep_X 80 P 80 (314)
T ss_dssp -
T ss_pred C
Confidence 6
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0028 Score=64.11 Aligned_cols=70 Identities=19% Similarity=0.318 Sum_probs=50.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee---------ecccchHHhhcCCCcEEEEc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII---------YKPLSEMLSCAADADVVFTS 316 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~---------~~~~~~~~~~l~~aDVVI~A 316 (513)
.++|+|||+|.||..++..|...|. +|++++|+ ++.+.+.+ .|. ... +...++..+ +..+|+||.|
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~-~V~~~~r~-~~~~~~~~-~g~-~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vila 77 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGE-AINVLARG-ATLQALQT-AGL-RLTEDGATHTLPVRATHDAAA-LGEQDVVIVA 77 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTC-CEEEECCH-HHHHHHHH-TCE-EEEETTEEEEECCEEESCHHH-HCCCSEEEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC-EEEEEECh-HHHHHHHH-CCC-EEecCCCeEEEeeeEECCHHH-cCCCCEEEEe
Confidence 4689999999999999999999997 59999996 56655543 221 110 011234443 5789999999
Q ss_pred CCCC
Q 010322 317 TASE 320 (513)
Q Consensus 317 T~s~ 320 (513)
+++.
T Consensus 78 vk~~ 81 (335)
T 3ghy_A 78 VKAP 81 (335)
T ss_dssp CCHH
T ss_pred CCch
Confidence 9884
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.002 Score=63.57 Aligned_cols=47 Identities=28% Similarity=0.469 Sum_probs=41.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL 290 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~ 290 (513)
.+.+++|+|.|+ |.+|+.+++.|...|++ |++++|+.++...+++++
T Consensus 15 ~l~~k~vlVTGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~l 62 (303)
T 1yxm_A 15 LLQGQVAIVTGGATGIGKAIVKELLELGSN-VVIASRKLERLKSAADEL 62 (303)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHH
Confidence 567899999998 99999999999999984 999999988877666654
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0042 Score=59.71 Aligned_cols=78 Identities=17% Similarity=0.264 Sum_probs=53.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCH--HHHHHHHHHhCCcceeec--c---c-chHHhh-------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSE--ERVAAICEELNGVEIIYK--P---L-SEMLSC------- 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~--~ra~~la~~~g~~~~~~~--~---~-~~~~~~------- 306 (513)
++.+++|+|.|+ |.+|+.+++.|...|++.|++++|+. +..+++.+..++..+.+. + . +++.+.
T Consensus 2 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T 1sby_A 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ 81 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHh
Confidence 357899999998 99999999999999996688899975 445555554322111111 1 1 222222
Q ss_pred cCCCcEEEEcCCCC
Q 010322 307 AADADVVFTSTASE 320 (513)
Q Consensus 307 l~~aDVVI~AT~s~ 320 (513)
....|+||++.+..
T Consensus 82 ~g~id~lv~~Ag~~ 95 (254)
T 1sby_A 82 LKTVDILINGAGIL 95 (254)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCCCEEEECCccC
Confidence 24789999998753
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0039 Score=60.55 Aligned_cols=76 Identities=13% Similarity=0.255 Sum_probs=55.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeec--c---cchHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK--P---LSEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~--~---~~~~~~~-------l 307 (513)
.+.+++++|.|+ |++|+.+++.|...|++ |++++|+.++++++++++.. ..+.+. + .+++.+. .
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGAD-LVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAY 86 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 568999999999 89999999999999995 99999999988877776521 111111 1 1222222 3
Q ss_pred CCCcEEEEcCCC
Q 010322 308 ADADVVFTSTAS 319 (513)
Q Consensus 308 ~~aDVVI~AT~s 319 (513)
...|++|++.+.
T Consensus 87 g~id~lv~nAg~ 98 (264)
T 3ucx_A 87 GRVDVVINNAFR 98 (264)
T ss_dssp SCCSEEEECCCS
T ss_pred CCCcEEEECCCC
Confidence 478999998755
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0023 Score=62.66 Aligned_cols=77 Identities=12% Similarity=0.176 Sum_probs=55.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC---Cc-c-ee--ecccchHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN---GV-E-II--YKPLSEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g---~~-~-~~--~~~~~~~~~~-------l 307 (513)
.+.+++++|.|+ |++|+.+++.|...|+ +|++++|+.++++++++.+. .. . +. +...+++.+. .
T Consensus 25 ~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (270)
T 3ftp_A 25 TLDKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEF 103 (270)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 578999999998 9999999999999999 59999999988877766542 11 1 11 1111222222 2
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|++|++.+..
T Consensus 104 g~iD~lvnnAg~~ 116 (270)
T 3ftp_A 104 GALNVLVNNAGIT 116 (270)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 4789999998754
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0027 Score=60.68 Aligned_cols=77 Identities=18% Similarity=0.190 Sum_probs=54.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeec--c---cchHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK--P---LSEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~--~---~~~~~~~-------l 307 (513)
++.+++++|.|+ |++|+.+++.|...|++ |++++|+.++.+++.+.+.. ..+.+. + .+++.+. .
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 2 SLNEKVALVTGASRGIGFEVAHALASKGAT-VVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 357899999998 99999999999999985 99999999888777665521 111111 1 1222222 2
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|+||++.+..
T Consensus 81 ~~id~li~~Ag~~ 93 (247)
T 3lyl_A 81 LAIDILVNNAGIT 93 (247)
T ss_dssp CCCSEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 3679999998764
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0026 Score=63.70 Aligned_cols=71 Identities=23% Similarity=0.265 Sum_probs=52.9
Q ss_pred CeEEEEcccHHHHH-HHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 247 ARMLVIGAGKMGKL-VIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGaG~mG~~-ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.+|+|||+|.||.. ++..|... |++-+.+++|++++++.++++++. . .+++..+...++|+|+.||+....
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~---~--~~~~~~~l~~~~D~V~i~tp~~~h 78 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRI---P--YADSLSSLAASCDAVFVHSSTASH 78 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTC---C--BCSSHHHHHTTCSEEEECSCTTHH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCC---C--ccCcHHHhhcCCCEEEEeCCchhH
Confidence 58999999999996 88888764 555445999999999999988863 1 122332223689999999997643
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0056 Score=59.46 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=55.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh----CCcceee--ccc---chHHh-------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL----NGVEIIY--KPL---SEMLS------- 305 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~----g~~~~~~--~~~---~~~~~------- 305 (513)
++.+++++|.|+ |++|+.+++.|...|++ |++++|+.++.+++.+++ ++..+.+ .+. +++.+
T Consensus 5 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (265)
T 3lf2_A 5 DLSEAVAVVTGGSSGIGLATVELLLEAGAA-VAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACER 83 (265)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 578999999998 99999999999999995 999999998887766654 2211111 111 22222
Q ss_pred hcCCCcEEEEcCCCC
Q 010322 306 CAADADVVFTSTASE 320 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~ 320 (513)
.....|++|++.+..
T Consensus 84 ~~g~id~lvnnAg~~ 98 (265)
T 3lf2_A 84 TLGCASILVNNAGQG 98 (265)
T ss_dssp HHCSCSEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 234789999998764
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0055 Score=59.68 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=53.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcc-ee--ecccchH-------HhhcCCCcEEE
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVE-II--YKPLSEM-------LSCAADADVVF 314 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~-~~--~~~~~~~-------~~~l~~aDVVI 314 (513)
+|+|+|.|+ ++||+++++.|...|++ |.+++|+.+++++++++.+... +. +...++. .+.....|++|
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~-V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLV 80 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDK-VCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLV 80 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 588999998 99999999999999995 9999999999888877654321 11 1111122 22345789999
Q ss_pred EcCCCC
Q 010322 315 TSTASE 320 (513)
Q Consensus 315 ~AT~s~ 320 (513)
++.+..
T Consensus 81 NNAG~~ 86 (247)
T 3ged_A 81 NNACRG 86 (247)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 987653
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0036 Score=63.29 Aligned_cols=74 Identities=19% Similarity=0.297 Sum_probs=54.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCc-----ceeecccchHHhhcCCCcEEEEcCCC
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGV-----EIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~-----~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
..+|.|||+|.+|..++..|...+. .+|.++|++.++++..+..+... ...+. .+..+.+.++|+||.+++.
T Consensus 5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~--~~~~~a~~~aDvVii~ag~ 82 (318)
T 1ez4_A 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIY--SGEYSDCKDADLVVITAGA 82 (318)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEE--ECCGGGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEE--ECCHHHhCCCCEEEECCCC
Confidence 4689999999999999999887763 57999999998887666655321 11121 1335668999999999987
Q ss_pred Cc
Q 010322 320 EA 321 (513)
Q Consensus 320 ~~ 321 (513)
+.
T Consensus 83 ~~ 84 (318)
T 1ez4_A 83 PQ 84 (318)
T ss_dssp --
T ss_pred CC
Confidence 63
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0021 Score=65.67 Aligned_cols=74 Identities=20% Similarity=0.188 Sum_probs=55.2
Q ss_pred CeEEEEcccHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCCc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~~ 321 (513)
.+|+|||+|.||..++..|... +++-+.++++++++++.++++++... ....+.+..+.+. ++|+|+.||+...
T Consensus 7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~-~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 83 (362)
T 1ydw_A 7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPE-STKIHGSYESLLEDPEIDALYVPLPTSL 83 (362)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCT-TCEEESSHHHHHHCTTCCEEEECCCGGG
T ss_pred eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCC-CCeeeCCHHHHhcCCCCCEEEEcCChHH
Confidence 5899999999999999988875 55555789999999999999886200 0112344555543 6899999998754
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0039 Score=63.25 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=56.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCc-----ceeecccchHHhhcCCCcEEEEcCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGV-----EIIYKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~-----~~~~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
...+|.|||+|.+|..++..|...+. .+|.++|++.++++..+..+... ...+. .+..+.+.++|+||.+.+
T Consensus 8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~--~~~~~a~~~aDvVii~ag 85 (326)
T 2zqz_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIY--SAEYSDAKDADLVVITAG 85 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEE--ECCGGGGGGCSEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEE--ECCHHHhCCCCEEEEcCC
Confidence 45799999999999999998887763 57999999998887766655321 11121 133566889999999998
Q ss_pred CCc
Q 010322 319 SEA 321 (513)
Q Consensus 319 s~~ 321 (513)
.+.
T Consensus 86 ~~~ 88 (326)
T 2zqz_A 86 APQ 88 (326)
T ss_dssp CC-
T ss_pred CCC
Confidence 864
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0026 Score=63.25 Aligned_cols=77 Identities=12% Similarity=0.235 Sum_probs=54.9
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC---Cc--ceeec--cc---chHHhh-----
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN---GV--EIIYK--PL---SEMLSC----- 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g---~~--~~~~~--~~---~~~~~~----- 306 (513)
++.+++++|.|+ |++|+.+++.|...|++ |++++|+.++++++++++. .. .+.+. +. +++.+.
T Consensus 23 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 101 (297)
T 1xhl_A 23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQ-VTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL 101 (297)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence 467899999998 99999999999999985 9999999988877665542 10 11111 11 222222
Q ss_pred --cCCCcEEEEcCCCC
Q 010322 307 --AADADVVFTSTASE 320 (513)
Q Consensus 307 --l~~aDVVI~AT~s~ 320 (513)
....|+||++.+..
T Consensus 102 ~~~g~iD~lvnnAG~~ 117 (297)
T 1xhl_A 102 AKFGKIDILVNNAGAN 117 (297)
T ss_dssp HHHSCCCEEEECCCCC
T ss_pred HhcCCCCEEEECCCcC
Confidence 24789999998754
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0033 Score=60.81 Aligned_cols=75 Identities=15% Similarity=0.275 Sum_probs=53.0
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHH-HHHHHHHh----CCcceeec--cc---chHHhh------
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEER-VAAICEEL----NGVEIIYK--PL---SEMLSC------ 306 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~r-a~~la~~~----g~~~~~~~--~~---~~~~~~------ 306 (513)
+.+++++|.|+ |.+|+.+++.|...|++ |++++|+.++ .+++.+++ +. .+.+. +. +++.+.
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~ 79 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGAD-IVLNGFGDAAEIEKVRAGLAAQHGV-KVLYDGADLSKGEAVRGLVDNAVR 79 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEECCSCHHHHHHHHHHHHHHHTS-CEEEECCCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCE-EEEEeCCcchHHHHHHHHHHhccCC-cEEEEECCCCCHHHHHHHHHHHHH
Confidence 46899999998 99999999999999985 9999998877 66665544 32 11211 11 222222
Q ss_pred -cCCCcEEEEcCCCC
Q 010322 307 -AADADVVFTSTASE 320 (513)
Q Consensus 307 -l~~aDVVI~AT~s~ 320 (513)
....|++|++.+..
T Consensus 80 ~~g~iD~lv~~Ag~~ 94 (260)
T 1x1t_A 80 QMGRIDILVNNAGIQ 94 (260)
T ss_dssp HHSCCSEEEECCCCC
T ss_pred hcCCCCEEEECCCCC
Confidence 24789999998754
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0034 Score=60.43 Aligned_cols=77 Identities=21% Similarity=0.327 Sum_probs=53.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeC-CHHHHHHHHHHhC--Ccceeec--c---cchHHhhc------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNR-SEERVAAICEELN--GVEIIYK--P---LSEMLSCA------ 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nR-s~~ra~~la~~~g--~~~~~~~--~---~~~~~~~l------ 307 (513)
++.+++|+|.|+ |.+|+.+++.|...|++ |++++| +.++.+.+.+.+. +..+.+. + .+++.+.+
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (261)
T 1gee_A 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAK-VVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE 82 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999998 99999999999999985 999999 8777766655542 1111111 1 12222222
Q ss_pred -CCCcEEEEcCCCC
Q 010322 308 -ADADVVFTSTASE 320 (513)
Q Consensus 308 -~~aDVVI~AT~s~ 320 (513)
...|+||++.+..
T Consensus 83 ~g~id~li~~Ag~~ 96 (261)
T 1gee_A 83 FGKLDVMINNAGLE 96 (261)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 3789999998754
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0034 Score=61.03 Aligned_cols=77 Identities=21% Similarity=0.159 Sum_probs=54.5
Q ss_pred CCCCCeEEEEcc-c--HHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh---CCcceeec--c---cchH-------H
Q 010322 243 SHATARMLVIGA-G--KMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL---NGVEIIYK--P---LSEM-------L 304 (513)
Q Consensus 243 ~l~g~~VlVIGa-G--~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~---g~~~~~~~--~---~~~~-------~ 304 (513)
++.||+++|.|+ | +||+++++.|...|++ |++++|+.+..+++++.+ ++....+. + .++. .
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~-Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAK-LVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIG 81 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 689999999998 4 7999999999999995 999999987776666544 32111111 1 1122 2
Q ss_pred hhcCCCcEEEEcCCCC
Q 010322 305 SCAADADVVFTSTASE 320 (513)
Q Consensus 305 ~~l~~aDVVI~AT~s~ 320 (513)
+.....|++|++.+..
T Consensus 82 ~~~G~iD~lvnnAg~~ 97 (256)
T 4fs3_A 82 KDVGNIDGVYHSIAFA 97 (256)
T ss_dssp HHHCCCSEEEECCCCC
T ss_pred HHhCCCCEEEeccccc
Confidence 2345899999987753
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0039 Score=61.26 Aligned_cols=76 Identities=17% Similarity=0.276 Sum_probs=53.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc--ceeec--cc---chHHhh-------cC
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV--EIIYK--PL---SEMLSC-------AA 308 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~--~~~~~--~~---~~~~~~-------l~ 308 (513)
+.+++++|.|+ |++|+.+++.|...|++ |++++|+.++++++++++... .+.+. +. +++.+. ..
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAARGIA-VYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFG 100 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46899999998 99999999999999985 999999999887777765311 11111 11 222222 34
Q ss_pred CCcEEEEcCCCC
Q 010322 309 DADVVFTSTASE 320 (513)
Q Consensus 309 ~aDVVI~AT~s~ 320 (513)
..|++|++.+..
T Consensus 101 ~id~lv~nAg~~ 112 (279)
T 3sju_A 101 PIGILVNSAGRN 112 (279)
T ss_dssp SCCEEEECCCCC
T ss_pred CCcEEEECCCCC
Confidence 789999998764
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0046 Score=59.47 Aligned_cols=76 Identities=8% Similarity=0.229 Sum_probs=53.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCH-HHHHHHHHHhCCcceeec--cc---chHHhh-------cC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSE-ERVAAICEELNGVEIIYK--PL---SEMLSC-------AA 308 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~-~ra~~la~~~g~~~~~~~--~~---~~~~~~-------l~ 308 (513)
++.+++++|.|+ |++|+.+++.|...|++ |++++|+. ++.++.....+. .+.+. +. +++.+. ..
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (249)
T 2ew8_A 4 RLKDKLAVITGGANGIGRAIAERFAVEGAD-IAIADLVPAPEAEAAIRNLGR-RVLTVKCDVSQPGDVEAFGKQVISTFG 81 (249)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCCchhHHHHHHHhcCC-cEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 467899999998 99999999999999984 99999987 666543333442 11111 11 222222 35
Q ss_pred CCcEEEEcCCCC
Q 010322 309 DADVVFTSTASE 320 (513)
Q Consensus 309 ~aDVVI~AT~s~ 320 (513)
..|++|++.+..
T Consensus 82 ~id~lv~nAg~~ 93 (249)
T 2ew8_A 82 RCDILVNNAGIY 93 (249)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 789999998754
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0023 Score=62.03 Aligned_cols=77 Identities=23% Similarity=0.322 Sum_probs=55.9
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC--Ccceeec--cc---chHHhh-------
Q 010322 242 SSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN--GVEIIYK--PL---SEMLSC------- 306 (513)
Q Consensus 242 ~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g--~~~~~~~--~~---~~~~~~------- 306 (513)
.++.+++|+|.|+ |++|+.+++.|...|++ |++++|+.++++.+.+++. +..+.+. +. +++.+.
T Consensus 25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 103 (262)
T 3rkr_A 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGAR-VVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAA 103 (262)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHh
Confidence 3578999999998 99999999999999985 9999999998877776652 1111111 11 222222
Q ss_pred cCCCcEEEEcCCC
Q 010322 307 AADADVVFTSTAS 319 (513)
Q Consensus 307 l~~aDVVI~AT~s 319 (513)
....|+||++.+.
T Consensus 104 ~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 104 HGRCDVLVNNAGV 116 (262)
T ss_dssp HSCCSEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 2468999999886
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0049 Score=60.35 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=54.8
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeC-------------CHHHHHHHHHHhCCc--ceeec--c---c
Q 010322 242 SSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNR-------------SEERVAAICEELNGV--EIIYK--P---L 300 (513)
Q Consensus 242 ~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nR-------------s~~ra~~la~~~g~~--~~~~~--~---~ 300 (513)
.++.|++++|.|+ |++|+.+++.|...|++ |++++| +.++.+++++.+... .+.+. + .
T Consensus 11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 89 (280)
T 3pgx_A 11 GSLQGRVAFITGAARGQGRSHAVRLAAEGAD-IIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDD 89 (280)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCH
Confidence 4678999999998 99999999999999995 888888 677776666654211 11111 1 1
Q ss_pred chHHhh-------cCCCcEEEEcCCCC
Q 010322 301 SEMLSC-------AADADVVFTSTASE 320 (513)
Q Consensus 301 ~~~~~~-------l~~aDVVI~AT~s~ 320 (513)
+++.+. ....|++|++.+..
T Consensus 90 ~~v~~~~~~~~~~~g~id~lvnnAg~~ 116 (280)
T 3pgx_A 90 AALRELVADGMEQFGRLDVVVANAGVL 116 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 222222 34789999998764
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0022 Score=71.83 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=52.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH----------hCCcc--------eeecccchHHhh
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEE----------LNGVE--------IIYKPLSEMLSC 306 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~----------~g~~~--------~~~~~~~~~~~~ 306 (513)
.-++|.|||+|.||..++..|...|.. |+++|+++++++..... .|... ..+....+. +.
T Consensus 313 ~i~kV~VIGaG~MG~~iA~~la~aG~~-V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~ 390 (715)
T 1wdk_A 313 DVKQAAVLGAGIMGGGIAYQSASKGTP-ILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GD 390 (715)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCC-EEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TT
T ss_pred cCCEEEEECCChhhHHHHHHHHhCCCE-EEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HH
Confidence 456899999999999999999999985 99999999877542110 11100 001122333 45
Q ss_pred cCCCcEEEEcCCCCc
Q 010322 307 AADADVVFTSTASEA 321 (513)
Q Consensus 307 l~~aDVVI~AT~s~~ 321 (513)
+.++|+||+|++...
T Consensus 391 ~~~aDlVIeaV~e~~ 405 (715)
T 1wdk_A 391 FGNVDLVVEAVVENP 405 (715)
T ss_dssp GGGCSEEEECCCSCH
T ss_pred HCCCCEEEEcCCCCH
Confidence 778999999998764
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0028 Score=61.68 Aligned_cols=77 Identities=14% Similarity=0.266 Sum_probs=51.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee--ecccchHHh-------hcCCCcE
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII--YKPLSEMLS-------CAADADV 312 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~--~~~~~~~~~-------~l~~aDV 312 (513)
++.+++++|.|+ |+||+.+++.|...|++ |++++|+.++..+.....+...+. +...+++.+ .....|+
T Consensus 24 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~ 102 (260)
T 3gem_A 24 TLSSAPILITGASQRVGLHCALRLLEHGHR-VIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRA 102 (260)
T ss_dssp ---CCCEEESSTTSHHHHHHHHHHHHTTCC-EEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCE
Confidence 467899999998 99999999999999985 999999887654444444421111 111122222 2347899
Q ss_pred EEEcCCCC
Q 010322 313 VFTSTASE 320 (513)
Q Consensus 313 VI~AT~s~ 320 (513)
+|++.+..
T Consensus 103 lv~nAg~~ 110 (260)
T 3gem_A 103 VVHNASEW 110 (260)
T ss_dssp EEECCCCC
T ss_pred EEECCCcc
Confidence 99998754
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0048 Score=59.57 Aligned_cols=77 Identities=14% Similarity=0.233 Sum_probs=54.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC--Ccceeec--cc---chHHhhc-------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN--GVEIIYK--PL---SEMLSCA------- 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g--~~~~~~~--~~---~~~~~~l------- 307 (513)
++.+++|+|.|+ |.+|+.+++.|...|+ +|++++|+.++.+.+.+++. +..+.+. +. +++.+.+
T Consensus 11 ~l~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 89 (266)
T 1xq1_A 11 SLKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMF 89 (266)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 467899999998 9999999999999998 59999999888776665541 1111111 11 1222222
Q ss_pred -CCCcEEEEcCCCC
Q 010322 308 -ADADVVFTSTASE 320 (513)
Q Consensus 308 -~~aDVVI~AT~s~ 320 (513)
...|+||++.+..
T Consensus 90 ~~~id~li~~Ag~~ 103 (266)
T 1xq1_A 90 GGKLDILINNLGAI 103 (266)
T ss_dssp TTCCSEEEEECCC-
T ss_pred CCCCcEEEECCCCC
Confidence 5789999998754
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0021 Score=61.54 Aligned_cols=75 Identities=12% Similarity=0.240 Sum_probs=53.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCC-HHHHHHHHHHh---CCcceeec--c---cchHHhhc-----
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRS-EERVAAICEEL---NGVEIIYK--P---LSEMLSCA----- 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs-~~ra~~la~~~---g~~~~~~~--~---~~~~~~~l----- 307 (513)
++.+++|+|.|+ |.+|+.+++.|...|++ |++++|+ .++.+.+.+++ +. .+.+. + .+++.+.+
T Consensus 4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~ 81 (258)
T 3afn_B 4 DLKGKRVLITGSSQGIGLATARLFARAGAK-VGLHGRKAPANIDETIASMRADGG-DAAFFAADLATSEACQQLVDEFVA 81 (258)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCCTTHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEECCCchhhHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHH
Confidence 457899999998 99999999999999985 9999998 77766665544 21 11111 1 12233333
Q ss_pred --CCCcEEEEcCCC
Q 010322 308 --ADADVVFTSTAS 319 (513)
Q Consensus 308 --~~aDVVI~AT~s 319 (513)
.+.|+||.+.+.
T Consensus 82 ~~g~id~vi~~Ag~ 95 (258)
T 3afn_B 82 KFGGIDVLINNAGG 95 (258)
T ss_dssp HHSSCSEEEECCCC
T ss_pred HcCCCCEEEECCCC
Confidence 379999998875
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.003 Score=61.99 Aligned_cols=76 Identities=14% Similarity=0.226 Sum_probs=54.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh---CCcceee-----cccchHHhhc------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL---NGVEIIY-----KPLSEMLSCA------ 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~---g~~~~~~-----~~~~~~~~~l------ 307 (513)
++.|++++|.|+ |+||+.+++.|...|+ +|++++|+.++.+++++++ +. .+.+ ...++..+.+
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~ 107 (275)
T 4imr_A 30 GLRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGG-TAQELAGDLSEAGAGTDLIERAEAI 107 (275)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTC-CEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCC-eEEEEEecCCCHHHHHHHHHHHHHh
Confidence 578999999998 9999999999999999 5999999988776766654 22 1111 1112222222
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|++|++.+..
T Consensus 108 g~iD~lvnnAg~~ 120 (275)
T 4imr_A 108 APVDILVINASAQ 120 (275)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 4789999998753
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0046 Score=62.57 Aligned_cols=72 Identities=13% Similarity=0.223 Sum_probs=54.1
Q ss_pred CeEEEEcccHHHHHH-HHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhc--CCCcEEEEcCCCCcc
Q 010322 247 ARMLVIGAGKMGKLV-IKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCA--ADADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGaG~mG~~i-a~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l--~~aDVVI~AT~s~~~ 322 (513)
-+|.|||+|.||+.. +..+... +++-+.|++++++++++++++++.. .. +.+..+.+ .+.|+|+-||+....
T Consensus 24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~-~~---y~d~~ell~~~~iDaV~I~tP~~~H 99 (350)
T 4had_A 24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVP-HA---FGSYEEMLASDVIDAVYIPLPTSQH 99 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCS-EE---ESSHHHHHHCSSCSEEEECSCGGGH
T ss_pred cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCC-ee---eCCHHHHhcCCCCCEEEEeCCCchh
Confidence 489999999999864 6677665 5654568999999999999999742 12 33444444 468999999998754
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.004 Score=64.65 Aligned_cols=72 Identities=13% Similarity=0.124 Sum_probs=55.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHc---------CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhc--CCCcEEEE
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAK---------GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCA--ADADVVFT 315 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~---------G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l--~~aDVVI~ 315 (513)
-+|.|||+|.||+..+..+... +++-+.|++++++++++++++++.. .. +.+..+.+ .+.|+|+.
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~-~~---y~d~~~ll~~~~vD~V~I 102 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAE-KA---YGDWRELVNDPQVDVVDI 102 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCS-EE---ESSHHHHHHCTTCCEEEE
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCC-eE---ECCHHHHhcCCCCCEEEE
Confidence 4899999999999998888764 3444668999999999999999852 12 33444444 47899999
Q ss_pred cCCCCcc
Q 010322 316 STASEAP 322 (513)
Q Consensus 316 AT~s~~~ 322 (513)
||+....
T Consensus 103 ~tp~~~H 109 (412)
T 4gqa_A 103 TSPNHLH 109 (412)
T ss_dssp CSCGGGH
T ss_pred CCCcHHH
Confidence 9988654
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0053 Score=64.28 Aligned_cols=74 Identities=20% Similarity=0.437 Sum_probs=55.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc---chHHhh-cCCCcEEEEcCCCCc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL---SEMLSC-AADADVVFTSTASEA 321 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~---~~~~~~-l~~aDVVI~AT~s~~ 321 (513)
+.+|+|+|+|.+|+.+++.|...|.. |+++++++++.+.+. ..|. .+.+-+. +-+.++ +..+|+||.||+.+.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~-vvvId~d~~~v~~~~-~~g~-~vi~GDat~~~~L~~agi~~A~~viv~~~~~~ 80 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVK-MVVLDHDPDHIETLR-KFGM-KVFYGDATRMDLLESAGAAKAEVLINAIDDPQ 80 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC-EEEEECCHHHHHHHH-HTTC-CCEESCTTCHHHHHHTTTTTCSEEEECCSSHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCC-EEEEECCHHHHHHHH-hCCC-eEEEcCCCCHHHHHhcCCCccCEEEECCCChH
Confidence 46799999999999999999999985 999999999986655 4442 1111111 223333 679999999998864
Q ss_pred c
Q 010322 322 P 322 (513)
Q Consensus 322 ~ 322 (513)
.
T Consensus 81 ~ 81 (413)
T 3l9w_A 81 T 81 (413)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0025 Score=67.03 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=55.9
Q ss_pred CCeEEEEcccHHHH-HHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCCc
Q 010322 246 TARMLVIGAGKMGK-LVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASEA 321 (513)
Q Consensus 246 g~~VlVIGaG~mG~-~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~~ 321 (513)
..+|+|||+|.||+ .++..|... +++-+.|+++++++++.++++++.....+..+.+..+.+. ++|+|+.||+...
T Consensus 83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~ 162 (433)
T 1h6d_A 83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSL 162 (433)
T ss_dssp CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGG
T ss_pred ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchh
Confidence 35899999999997 888888765 4544579999999999999988631100112445555554 7999999998764
Q ss_pred c
Q 010322 322 P 322 (513)
Q Consensus 322 ~ 322 (513)
.
T Consensus 163 h 163 (433)
T 1h6d_A 163 H 163 (433)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0035 Score=60.80 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=53.7
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC----cceeec--cc---chHHhh-------
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG----VEIIYK--PL---SEMLSC------- 306 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~----~~~~~~--~~---~~~~~~------- 306 (513)
+.+++++|.|+ |.+|+.+++.|...|++ |++++|+.++...+.+++.. ..+.+. +. +++.+.
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGAK-VALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 83 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 46899999998 99999999999999984 99999998887666555421 111111 11 222222
Q ss_pred cCCCcEEEEcCCCC
Q 010322 307 AADADVVFTSTASE 320 (513)
Q Consensus 307 l~~aDVVI~AT~s~ 320 (513)
....|+||++.+..
T Consensus 84 ~g~id~lv~~Ag~~ 97 (267)
T 2gdz_A 84 FGRLDILVNNAGVN 97 (267)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 24679999998764
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0057 Score=60.01 Aligned_cols=78 Identities=15% Similarity=0.255 Sum_probs=54.6
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCC----------------HHHHHHHHHHhCCc--ceeec----
Q 010322 242 SSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRS----------------EERVAAICEELNGV--EIIYK---- 298 (513)
Q Consensus 242 ~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs----------------~~ra~~la~~~g~~--~~~~~---- 298 (513)
..+.|++++|.|+ |+||+.+++.|...|++ |++++|+ .++++++++.+... .+.+.
T Consensus 7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv 85 (286)
T 3uve_A 7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGAD-IIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDV 85 (286)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCT
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCC
Confidence 3578999999999 89999999999999985 8888886 67776666654211 11111
Q ss_pred -ccchHHhh-------cCCCcEEEEcCCCC
Q 010322 299 -PLSEMLSC-------AADADVVFTSTASE 320 (513)
Q Consensus 299 -~~~~~~~~-------l~~aDVVI~AT~s~ 320 (513)
..+++.+. ....|++|++.+..
T Consensus 86 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 115 (286)
T 3uve_A 86 RDYDALKAAVDSGVEQLGRLDIIVANAGIG 115 (286)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCccc
Confidence 11222222 24789999998764
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0016 Score=67.61 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=51.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHc-CCCeEEEEe---CCHHHHHHHHHHhC---------C--cce--eec-ccchHHhhcC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAK-GCTKMVVVN---RSEERVAAICEELN---------G--VEI--IYK-PLSEMLSCAA 308 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~-G~~~V~v~n---Rs~~ra~~la~~~g---------~--~~~--~~~-~~~~~~~~l~ 308 (513)
.+|+|||+|.||..++..|... |. +|++++ |++++.+.+.++.+ + ... .+. ...+..+++.
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~G~-~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 81 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRDGV-EVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAIS 81 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSTTE-EEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHT
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCC-EEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhC
Confidence 4799999999999999999874 76 699999 87777755333322 1 000 011 2235556678
Q ss_pred CCcEEEEcCCCCc
Q 010322 309 DADVVFTSTASEA 321 (513)
Q Consensus 309 ~aDVVI~AT~s~~ 321 (513)
++|+||.|+++..
T Consensus 82 ~aD~Vilav~~~~ 94 (404)
T 3c7a_A 82 GADVVILTVPAFA 94 (404)
T ss_dssp TCSEEEECSCGGG
T ss_pred CCCEEEEeCchHH
Confidence 9999999998753
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0062 Score=59.88 Aligned_cols=78 Identities=17% Similarity=0.335 Sum_probs=54.3
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeC-CHHHHHHHHHHhCC---cceeec--c---cchHHh------
Q 010322 242 SSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNR-SEERVAAICEELNG---VEIIYK--P---LSEMLS------ 305 (513)
Q Consensus 242 ~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nR-s~~ra~~la~~~g~---~~~~~~--~---~~~~~~------ 305 (513)
.++.+++++|.|+ |++|+.+++.|...|+ +|++++| +.++.+.+++++.. ..+.+. + .+++.+
T Consensus 21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 99 (281)
T 3v2h_A 21 QSMMTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVA 99 (281)
T ss_dssp -CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 3678999999998 9999999999999999 5999999 66666666665421 112211 1 122222
Q ss_pred -hcCCCcEEEEcCCCC
Q 010322 306 -CAADADVVFTSTASE 320 (513)
Q Consensus 306 -~l~~aDVVI~AT~s~ 320 (513)
.....|++|++.+..
T Consensus 100 ~~~g~iD~lv~nAg~~ 115 (281)
T 3v2h_A 100 DRFGGADILVNNAGVQ 115 (281)
T ss_dssp HHTSSCSEEEECCCCC
T ss_pred HHCCCCCEEEECCCCC
Confidence 234789999998764
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0049 Score=59.97 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=55.9
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC----Ccceee--cccc---hHH---hhcCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN----GVEIIY--KPLS---EML---SCAAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g----~~~~~~--~~~~---~~~---~~l~~ 309 (513)
.+.+++++|.|+ |++|+.+++.|...|++ |++++|+.++.++..+++. ...+.. .+.. .+. +.+..
T Consensus 7 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~ 85 (267)
T 3t4x_A 7 QLKGKTALVTGSTAGIGKAIATSLVAEGAN-VLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPK 85 (267)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCC
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCC
Confidence 568999999998 99999999999999985 9999999988776666542 111111 1111 222 23457
Q ss_pred CcEEEEcCCCCc
Q 010322 310 ADVVFTSTASEA 321 (513)
Q Consensus 310 aDVVI~AT~s~~ 321 (513)
.|++|++.+...
T Consensus 86 id~lv~nAg~~~ 97 (267)
T 3t4x_A 86 VDILINNLGIFE 97 (267)
T ss_dssp CSEEEECCCCCC
T ss_pred CCEEEECCCCCC
Confidence 899999987643
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0022 Score=64.62 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=52.1
Q ss_pred CeEEEEcccHHHHHHHHHHHH--cCCCeEEEEeCCHHH-HHHHHHHhCCcceeecccchHHhh--cCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVA--KGCTKMVVVNRSEER-VAAICEELNGVEIIYKPLSEMLSC--AADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~--~G~~~V~v~nRs~~r-a~~la~~~g~~~~~~~~~~~~~~~--l~~aDVVI~AT~s~ 320 (513)
.+|.|||+|.+|+.+++.+.. .+++-+.++++++++ +.+++++++.. ......+++.+. ..+.|+||.|||..
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~-~~~~~~e~ll~~~~~~~iDvV~~atp~~ 82 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVT-TTYAGVEGLIKLPEFADIDFVFDATSAS 82 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCC-EESSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCC-cccCCHHHHHhccCCCCCcEEEECCChH
Confidence 579999999999999999855 356666789999888 67888888742 111122233221 24689999999954
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0028 Score=64.58 Aligned_cols=72 Identities=18% Similarity=0.122 Sum_probs=54.8
Q ss_pred CeEEEEcccHHHHHHHHHHHHcC--------CCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC--CCcEEEEc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKG--------CTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA--DADVVFTS 316 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G--------~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~A 316 (513)
-+|.|||+|.||...+..+...+ ++-+.|++++++++++++++++.. . .+.+..+.+. +.|+|+-|
T Consensus 7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~--~--~~~d~~~ll~~~~iDaV~I~ 82 (390)
T 4h3v_A 7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWS--T--TETDWRTLLERDDVQLVDVC 82 (390)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCS--E--EESCHHHHTTCTTCSEEEEC
T ss_pred CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCC--c--ccCCHHHHhcCCCCCEEEEe
Confidence 48999999999999888877542 234568999999999999999742 1 2345555553 68999999
Q ss_pred CCCCcc
Q 010322 317 TASEAP 322 (513)
Q Consensus 317 T~s~~~ 322 (513)
|+...+
T Consensus 83 tP~~~H 88 (390)
T 4h3v_A 83 TPGDSH 88 (390)
T ss_dssp SCGGGH
T ss_pred CChHHH
Confidence 988654
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0039 Score=65.64 Aligned_cols=73 Identities=16% Similarity=0.325 Sum_probs=52.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecc-cchH------------HhhcCCCc
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKP-LSEM------------LSCAADAD 311 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~-~~~~------------~~~l~~aD 311 (513)
.|.+..|||+|-||..++..|...|. +|+++|+++++.+.+.+.. ..+ ..+ .+++ ...+.++|
T Consensus 10 ~~~~~~ViGlGyvGlp~A~~La~~G~-~V~~~D~~~~kv~~L~~g~--~pi-~epgl~~ll~~~~~~g~l~~ttd~~~aD 85 (431)
T 3ojo_A 10 HGSKLTVVGLGYIGLPTSIMFAKHGV-DVLGVDINQQTIDKLQNGQ--ISI-EEPGLQEVYEEVLSSGKLKVSTTPEASD 85 (431)
T ss_dssp --CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTC--CSS-CCTTHHHHHHHHHHTTCEEEESSCCCCS
T ss_pred cCCccEEEeeCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHCCC--CCc-CCCCHHHHHHhhcccCceEEeCchhhCC
Confidence 57899999999999999999999998 5999999999998876521 000 001 0000 00145899
Q ss_pred EEEEcCCCCc
Q 010322 312 VVFTSTASEA 321 (513)
Q Consensus 312 VVI~AT~s~~ 321 (513)
+||.|+|.|.
T Consensus 86 vvii~VpTp~ 95 (431)
T 3ojo_A 86 VFIIAVPTPN 95 (431)
T ss_dssp EEEECCCCCB
T ss_pred EEEEEeCCCc
Confidence 9999999885
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0029 Score=64.19 Aligned_cols=74 Identities=14% Similarity=0.111 Sum_probs=56.4
Q ss_pred CCCeEEEEccc-HHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhc--CCCcEEEEcCCC
Q 010322 245 ATARMLVIGAG-KMGKLVIKHLVAK--GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCA--ADADVVFTSTAS 319 (513)
Q Consensus 245 ~g~~VlVIGaG-~mG~~ia~~L~~~--G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l--~~aDVVI~AT~s 319 (513)
..-+|+|||+| .+|...+..+... +++-+.|++++++++++++++++.. . .+.+..+.+ .+.|+|+.||+.
T Consensus 17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~--~--~~~~~~~ll~~~~vD~V~i~tp~ 92 (340)
T 1zh8_A 17 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNP--A--VFDSYEELLESGLVDAVDLTLPV 92 (340)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSC--E--EESCHHHHHHSSCCSEEEECCCG
T ss_pred CceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCC--c--ccCCHHHHhcCCCCCEEEEeCCc
Confidence 34689999999 8999999999876 4554578999999999999998741 1 234444444 368999999987
Q ss_pred Ccc
Q 010322 320 EAP 322 (513)
Q Consensus 320 ~~~ 322 (513)
...
T Consensus 93 ~~H 95 (340)
T 1zh8_A 93 ELN 95 (340)
T ss_dssp GGH
T ss_pred hHH
Confidence 643
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0029 Score=62.22 Aligned_cols=47 Identities=21% Similarity=0.407 Sum_probs=39.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCH-HHHHHHHHHh
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSE-ERVAAICEEL 290 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~-~ra~~la~~~ 290 (513)
++.+++++|.|+ |++|+.+++.|...|++ |++++|+. ++.+++++++
T Consensus 20 ~l~~k~~lVTGas~gIG~aia~~L~~~G~~-V~~~~r~~~~~~~~~~~~l 68 (288)
T 2x9g_A 20 HMEAPAAVVTGAAKRIGRAIAVKLHQTGYR-VVIHYHNSAEAAVSLADEL 68 (288)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHHTCE-EEEEESSCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHHHH
Confidence 467899999998 99999999999999985 99999987 7776666554
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0048 Score=59.33 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=52.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHh---CCcceee--ccc---chHHhhc-------
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVA-KGCTKMVVVNRSEERVAAICEEL---NGVEIIY--KPL---SEMLSCA------- 307 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~-~G~~~V~v~nRs~~ra~~la~~~---g~~~~~~--~~~---~~~~~~l------- 307 (513)
.+++|+|.|+ |.+|+.+++.|.. .|+ +|++++|+.++...+.+.+ +. .+.+ .+. +++.+.+
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEY 80 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCC-eeEEEECCCCCHHHHHHHHHHHHHhc
Confidence 5789999998 9999999999999 898 5999999988776666554 21 1111 111 2233322
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|+||.+.+..
T Consensus 81 g~id~li~~Ag~~ 93 (276)
T 1wma_A 81 GGLDVLVNNAGIA 93 (276)
T ss_dssp SSEEEEEECCCCC
T ss_pred CCCCEEEECCccc
Confidence 3789999988754
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0021 Score=67.74 Aligned_cols=77 Identities=22% Similarity=0.279 Sum_probs=53.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEe----------CCH---------HHHHHHHHHhC----Ccceeeccc-
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVN----------RSE---------ERVAAICEELN----GVEIIYKPL- 300 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~n----------Rs~---------~ra~~la~~~g----~~~~~~~~~- 300 (513)
.+.+|+|||+|++|..++++|...|+.+|+++| |.. .|++.+++.+. ...+...+.
T Consensus 39 ~~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~~~~ 118 (434)
T 1tt5_B 39 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK 118 (434)
T ss_dssp HTCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEESC
T ss_pred cCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEEecc
Confidence 468999999999999999999999999999995 431 25555555432 211221111
Q ss_pred -c-hHHhhcCCCcEEEEcCCCCc
Q 010322 301 -S-EMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 301 -~-~~~~~l~~aDVVI~AT~s~~ 321 (513)
. ...+.+.++|+||+||.+..
T Consensus 119 i~~~~~~~~~~~DlVi~~~Dn~~ 141 (434)
T 1tt5_B 119 IQDFNDTFYRQFHIIVCGLDSII 141 (434)
T ss_dssp GGGBCHHHHTTCSEEEECCSCHH
T ss_pred cchhhHHHhcCCCEEEECCCCHH
Confidence 1 11355789999999987643
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0066 Score=59.59 Aligned_cols=77 Identities=16% Similarity=0.269 Sum_probs=54.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC--cceeec--c---cchHHhh-------c
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG--VEIIYK--P---LSEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~--~~~~~~--~---~~~~~~~-------l 307 (513)
.+.+++|+|.|+ |.+|+.+++.|...|+ +|++++|+.++.+.+.+.+.. ..+.+. + .+++.+. .
T Consensus 41 ~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 119 (285)
T 2c07_A 41 CGENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH 119 (285)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhc
Confidence 457899999998 9999999999999998 488899998887776665421 111111 1 1222222 2
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|+||.+.+..
T Consensus 120 ~~id~li~~Ag~~ 132 (285)
T 2c07_A 120 KNVDILVNNAGIT 132 (285)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 5789999998754
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0044 Score=61.23 Aligned_cols=47 Identities=26% Similarity=0.400 Sum_probs=39.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEe-CCHHHHHHHHHHh
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVN-RSEERVAAICEEL 290 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~n-Rs~~ra~~la~~~ 290 (513)
++.+++++|.|+ |++|+.+++.|...|++ |++++ |+.++.+.+++++
T Consensus 6 ~l~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~~r~~~~~~~~~~~l 54 (291)
T 1e7w_A 6 APTVPVALVTGAAKRLGRSIAEGLHAEGYA-VCLHYHRSAAEANALSATL 54 (291)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEcCCCHHHHHHHHHHH
Confidence 467899999998 99999999999999985 88999 9998877766654
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0035 Score=61.52 Aligned_cols=76 Identities=18% Similarity=0.344 Sum_probs=53.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-ceeec--c---cchHHhhc-------C
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-EIIYK--P---LSEMLSCA-------A 308 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~--~---~~~~~~~l-------~ 308 (513)
++. ++++|.|+ |++|+.+++.|...|++ |++++|+.++.+++++++... .+.+. + .+++.+.+ .
T Consensus 19 ~~~-k~vlVTGas~gIG~aia~~La~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 96 (272)
T 2nwq_A 19 HMS-STLFITGATSGFGEACARRFAEAGWS-LVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFA 96 (272)
T ss_dssp --C-CEEEESSTTTSSHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGS
T ss_pred CcC-cEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 345 88999998 99999999999999984 999999999888877766420 11111 1 12233222 3
Q ss_pred CCcEEEEcCCCC
Q 010322 309 DADVVFTSTASE 320 (513)
Q Consensus 309 ~aDVVI~AT~s~ 320 (513)
..|++|++.+..
T Consensus 97 ~iD~lvnnAG~~ 108 (272)
T 2nwq_A 97 TLRGLINNAGLA 108 (272)
T ss_dssp SCCEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 569999998754
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0043 Score=59.94 Aligned_cols=76 Identities=22% Similarity=0.266 Sum_probs=53.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeC-CHHHHHHHHHHh---CCcceeec--c---cchHHhhc-----
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNR-SEERVAAICEEL---NGVEIIYK--P---LSEMLSCA----- 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nR-s~~ra~~la~~~---g~~~~~~~--~---~~~~~~~l----- 307 (513)
.+.+++|+|.|+ |.+|+.+++.|...|++ |++++| +.++.+.+.+++ +. .+.+. + .+++.+.+
T Consensus 18 ~~~~k~vlItGasggiG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~ 95 (274)
T 1ja9_A 18 PLAGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVS 95 (274)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCchHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHH
Confidence 467899999998 99999999999999984 888888 777766665544 22 11111 1 12233333
Q ss_pred --CCCcEEEEcCCCC
Q 010322 308 --ADADVVFTSTASE 320 (513)
Q Consensus 308 --~~aDVVI~AT~s~ 320 (513)
...|+||++.+..
T Consensus 96 ~~~~~d~vi~~Ag~~ 110 (274)
T 1ja9_A 96 HFGGLDFVMSNSGME 110 (274)
T ss_dssp HHSCEEEEECCCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 3789999998764
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0074 Score=60.68 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=55.2
Q ss_pred CeEEEEcccHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhCCc-----ceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKG-CTKMVVVNRSEERVAAICEELNGV-----EIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G-~~~V~v~nRs~~ra~~la~~~g~~-----~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+|.|||+|.+|..++..|...+ +.+|.++|++.++++..+..+... ...+.. .+ .+.+.++|+||.+++.+
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~~-~~a~~~aD~Vii~ag~~ 78 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-GS-YGDLEGARAVVLAAGVA 78 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-CC-GGGGTTEEEEEECCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-CC-HHHhCCCCEEEECCCCC
Confidence 47999999999999999888876 357999999998887666665421 112221 23 56689999999999886
Q ss_pred c
Q 010322 321 A 321 (513)
Q Consensus 321 ~ 321 (513)
.
T Consensus 79 ~ 79 (310)
T 2xxj_A 79 Q 79 (310)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0044 Score=60.83 Aligned_cols=75 Identities=15% Similarity=0.295 Sum_probs=52.6
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCH-------HHHHHHHHH-hCCccee---ecccchHHhhcCCCcEE
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSE-------ERVAAICEE-LNGVEII---YKPLSEMLSCAADADVV 313 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~-------~ra~~la~~-~g~~~~~---~~~~~~~~~~l~~aDVV 313 (513)
+++|+|+|+ |.+|+.+++.|...|.. |++..|+. +++..+..- -.+..+. +...+++.+++.++|+|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~v 80 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNP-TYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIV 80 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCC-EEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCc-EEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEE
Confidence 468999998 99999999999999974 88999986 555433211 1121111 11223466778899999
Q ss_pred EEcCCCCc
Q 010322 314 FTSTASEA 321 (513)
Q Consensus 314 I~AT~s~~ 321 (513)
|.+++...
T Consensus 81 i~~a~~~~ 88 (307)
T 2gas_A 81 ICAAGRLL 88 (307)
T ss_dssp EECSSSSC
T ss_pred EECCcccc
Confidence 99988654
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.006 Score=58.00 Aligned_cols=75 Identities=12% Similarity=0.174 Sum_probs=53.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCC------eEEEEeCCHHHHHHHHHHhCC--cceeec--cc---chHHhh-----
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCT------KMVVVNRSEERVAAICEELNG--VEIIYK--PL---SEMLSC----- 306 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~------~V~v~nRs~~ra~~la~~~g~--~~~~~~--~~---~~~~~~----- 306 (513)
+++|+|.|+ |.+|+.+++.|...|+. +|++++|+.++.+.+..++.. ..+.+. +. +++.+.
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV 81 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence 578999998 99999999999999984 699999999888777665521 111111 11 222222
Q ss_pred --cCCCcEEEEcCCCC
Q 010322 307 --AADADVVFTSTASE 320 (513)
Q Consensus 307 --l~~aDVVI~AT~s~ 320 (513)
....|+||++.+..
T Consensus 82 ~~~g~id~li~~Ag~~ 97 (244)
T 2bd0_A 82 ERYGHIDCLVNNAGVG 97 (244)
T ss_dssp HHTSCCSEEEECCCCC
T ss_pred HhCCCCCEEEEcCCcC
Confidence 23789999998754
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0015 Score=61.91 Aligned_cols=75 Identities=19% Similarity=0.379 Sum_probs=52.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHHhCCcc--eeecccchHHhhcCCCcEEEEcCCCC
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCT-KMVVVNRSEERVAAICEELNGVE--IIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~-~V~v~nRs~~ra~~la~~~g~~~--~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+++|+|.|+ |.+|+.+++.|...|+. +|++++|++++....... +... ..+...+++.+.+.++|+||++.+..
T Consensus 17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~ 95 (242)
T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYK-NVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT 95 (242)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGG-GCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccC-CceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence 5789999997 99999999999999972 599999987544221111 1100 11222345566678999999998865
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0027 Score=63.83 Aligned_cols=77 Identities=12% Similarity=0.289 Sum_probs=55.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC---C-cceeec--cc---chHHhh------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN---G-VEIIYK--PL---SEMLSC------ 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g---~-~~~~~~--~~---~~~~~~------ 306 (513)
++.+++|+|.|+ |+||+.+++.|...|++ |++++|+.++.+.+.+.+. . ..+.+. +. +++.+.
T Consensus 5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~-Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 83 (319)
T 3ioy_A 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCK-VAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEA 83 (319)
T ss_dssp CCTTCEEEEETTTSTHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEcCCchHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 568999999998 99999999999999985 9999999998877766542 1 011111 11 222222
Q ss_pred -cCCCcEEEEcCCCC
Q 010322 307 -AADADVVFTSTASE 320 (513)
Q Consensus 307 -l~~aDVVI~AT~s~ 320 (513)
....|+||++.|..
T Consensus 84 ~~g~id~lv~nAg~~ 98 (319)
T 3ioy_A 84 RFGPVSILCNNAGVN 98 (319)
T ss_dssp HTCCEEEEEECCCCC
T ss_pred hCCCCCEEEECCCcC
Confidence 24679999998853
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.00096 Score=67.34 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=53.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCCcc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASEAP 322 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~~~ 322 (513)
..+|+|||+|.||...+..+... ++.-+.+++|++++++.++++++.. ..+.+..+.+. ++|+|+.||+....
T Consensus 5 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~----~~~~~~~~ll~~~~~D~V~i~tp~~~h 80 (329)
T 3evn_A 5 KVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLP----KAYDKLEDMLADESIDVIYVATINQDH 80 (329)
T ss_dssp CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCS----CEESCHHHHHTCTTCCEEEECSCGGGH
T ss_pred ceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEECCCcHHH
Confidence 35899999999999999988876 4444568899999998888877631 12345555555 79999999987644
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0061 Score=61.50 Aligned_cols=74 Identities=16% Similarity=0.310 Sum_probs=51.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCc-----ceeecccchHHhhcCCCcEEEEcCCC
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGV-----EIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~-----~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
..+|.|||+|.+|..++..|...|. .+|.++|.+.++++..+..+... ...+.. .+ .+.+.+||+||.+.+.
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~~-~~a~~~aDvVii~~g~ 84 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA-GD-YSDVKDCDVIVVTAGA 84 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC---C-GGGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE-CC-HHHhCCCCEEEEcCCC
Confidence 4689999999999999999988775 57999999988766555555421 112221 23 5568999999999988
Q ss_pred Cc
Q 010322 320 EA 321 (513)
Q Consensus 320 ~~ 321 (513)
|.
T Consensus 85 p~ 86 (318)
T 1y6j_A 85 NR 86 (318)
T ss_dssp --
T ss_pred CC
Confidence 64
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0033 Score=60.29 Aligned_cols=72 Identities=18% Similarity=0.134 Sum_probs=52.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEE-e--CCHHHHHHHHHHhCCcceeecccchH-------HhhcCCCcEEE
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVV-N--RSEERVAAICEELNGVEIIYKPLSEM-------LSCAADADVVF 314 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~-n--Rs~~ra~~la~~~g~~~~~~~~~~~~-------~~~l~~aDVVI 314 (513)
+++++|.|+ |++|+.+++.|...|++ |+++ + |+.++.+.+.+++.+ ..+...+++ .+.....|++|
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~~~~r~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~g~iD~lv 77 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYT-VVCHDASFADAAERQRFESENPG--TIALAEQKPERLVDATLQHGEAIDTIV 77 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCE-EEECCGGGGSHHHHHHHHHHSTT--EEECCCCCGGGHHHHHGGGSSCEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCE-EEEecCCcCCHHHHHHHHHHhCC--CcccCHHHHHHHHHHHHHHcCCCCEEE
Confidence 478999998 99999999999999985 8888 6 999888877776611 122222222 22234789999
Q ss_pred EcCCCC
Q 010322 315 TSTASE 320 (513)
Q Consensus 315 ~AT~s~ 320 (513)
++.+..
T Consensus 78 ~~Ag~~ 83 (244)
T 1zmo_A 78 SNDYIP 83 (244)
T ss_dssp ECCCCC
T ss_pred ECCCcC
Confidence 998754
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0071 Score=59.51 Aligned_cols=74 Identities=20% Similarity=0.359 Sum_probs=52.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHH-hCCcce---eecccchHHhhcCCCcEEEE
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRS-----EERVAAICEE-LNGVEI---IYKPLSEMLSCAADADVVFT 315 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs-----~~ra~~la~~-~g~~~~---~~~~~~~~~~~l~~aDVVI~ 315 (513)
.++|+|+|+ |.+|+.+++.|...|. +|+++.|+ ++++..+..- -.+..+ .+...+++.+++.++|+||.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~ 82 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS 82 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC-cEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEE
Confidence 468999997 9999999999999997 49999998 5555443221 112111 11223356677889999999
Q ss_pred cCCCC
Q 010322 316 STASE 320 (513)
Q Consensus 316 AT~s~ 320 (513)
+++..
T Consensus 83 ~a~~~ 87 (313)
T 1qyd_A 83 ALAGG 87 (313)
T ss_dssp CCCCS
T ss_pred CCccc
Confidence 98765
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.006 Score=59.57 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=53.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCC------------HHHHHHHHHHh---CCcceeec--c---cc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRS------------EERVAAICEEL---NGVEIIYK--P---LS 301 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs------------~~ra~~la~~~---g~~~~~~~--~---~~ 301 (513)
.+.|++|+|.|+ |+||+.+++.|...|++ |++++|+ .++.+.....+ +. .+.+. + .+
T Consensus 7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~ 84 (287)
T 3pxx_A 7 RVQDKVVLVTGGARGQGRSHAVKLAEEGAD-IILFDICHDIETNEYPLATSRDLEEAGLEVEKTGR-KAYTAEVDVRDRA 84 (287)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTS-CEEEEECCTTCHH
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCe-EEEEcccccccccccchhhhHHHHHHHHHHHhcCC-ceEEEEccCCCHH
Confidence 578999999998 89999999999999985 9999987 55555544433 21 11111 1 12
Q ss_pred hHHhh-------cCCCcEEEEcCCCCc
Q 010322 302 EMLSC-------AADADVVFTSTASEA 321 (513)
Q Consensus 302 ~~~~~-------l~~aDVVI~AT~s~~ 321 (513)
++.+. ....|++|++.+...
T Consensus 85 ~v~~~~~~~~~~~g~id~lv~nAg~~~ 111 (287)
T 3pxx_A 85 AVSRELANAVAEFGKLDVVVANAGICP 111 (287)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCc
Confidence 22222 247899999987643
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0055 Score=59.81 Aligned_cols=78 Identities=17% Similarity=0.265 Sum_probs=54.0
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCC------------HHHHHHHHHHh---CCcceeec-----cc
Q 010322 242 SSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRS------------EERVAAICEEL---NGVEIIYK-----PL 300 (513)
Q Consensus 242 ~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs------------~~ra~~la~~~---g~~~~~~~-----~~ 300 (513)
.++.|++++|.|+ |+||+.+++.|...|++ |++++|+ .++.....+.+ +. .+.+. ..
T Consensus 9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~ 86 (278)
T 3sx2_A 9 GPLTGKVAFITGAARGQGRAHAVRLAADGAD-IIAVDLCDQIASVPYPLATPEELAATVKLVEDIGS-RIVARQADVRDR 86 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTC-CEEEEECCTTCH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEecccccccccccccchHHHHHHHHHHHhcCC-eEEEEeCCCCCH
Confidence 3578999999998 99999999999999995 8999887 66665554433 22 11111 11
Q ss_pred chHHhh-------cCCCcEEEEcCCCCc
Q 010322 301 SEMLSC-------AADADVVFTSTASEA 321 (513)
Q Consensus 301 ~~~~~~-------l~~aDVVI~AT~s~~ 321 (513)
+++.+. ....|++|++.+...
T Consensus 87 ~~v~~~~~~~~~~~g~id~lv~nAg~~~ 114 (278)
T 3sx2_A 87 ESLSAALQAGLDELGRLDIVVANAGIAP 114 (278)
T ss_dssp HHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 222222 247899999987653
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0049 Score=60.56 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=53.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC---cceeec--c---c-chHHh-------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG---VEIIYK--P---L-SEMLS------- 305 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~---~~~~~~--~---~-~~~~~------- 305 (513)
.+.+++|+|.|+ |+||+.+++.|...|+ +|++++|+.++.++..+++.. ..+.+. + . +.+..
T Consensus 9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 9 VTKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKT 87 (311)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHH
Confidence 357899999998 9999999999999998 599999999888776666521 111111 1 1 11111
Q ss_pred hcCCCcEEEEcCCCC
Q 010322 306 CAADADVVFTSTASE 320 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~ 320 (513)
.....|++|++.|..
T Consensus 88 ~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 88 HFGKLDILVNNAGVA 102 (311)
T ss_dssp HHSSCCEEEECCCCC
T ss_pred hCCCCCEEEECCccc
Confidence 234789999998865
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0058 Score=58.97 Aligned_cols=74 Identities=15% Similarity=0.284 Sum_probs=51.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHH--HHHHHHHhCC--cceeec--cc---chHHhh-------cC
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEER--VAAICEELNG--VEIIYK--PL---SEMLSC-------AA 308 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~r--a~~la~~~g~--~~~~~~--~~---~~~~~~-------l~ 308 (513)
+++++|.|+ |++|+.+++.|...|++ |++++|+.++ ++++++++.. ..+.+. +. +++.+. ..
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 80 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFD-IAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLG 80 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 688999998 99999999999999985 9999998877 6666655421 111111 11 222222 24
Q ss_pred CCcEEEEcCCCC
Q 010322 309 DADVVFTSTASE 320 (513)
Q Consensus 309 ~aDVVI~AT~s~ 320 (513)
..|++|++.+..
T Consensus 81 ~iD~lv~nAg~~ 92 (258)
T 3a28_C 81 GFDVLVNNAGIA 92 (258)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 789999998754
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0021 Score=66.46 Aligned_cols=72 Identities=13% Similarity=0.229 Sum_probs=54.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAK--GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~--G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
+..+|+|||+| +|+..+..+... +++=+-|++|+.++++++++++|. . .+.+..+.+.+.|+|+-||+.+..
T Consensus 6 ~~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv---~--~~~~~~~l~~~~D~v~i~~p~~~h 79 (372)
T 4gmf_A 6 PKQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGI---P--LYTSPEQITGMPDIACIVVRSTVA 79 (372)
T ss_dssp -CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTC---C--EESSGGGCCSCCSEEEECCC--CT
T ss_pred CCCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCC---C--EECCHHHHhcCCCEEEEECCCccc
Confidence 35689999999 799888877664 455456899999999999999973 2 245566667789999999987643
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0041 Score=59.93 Aligned_cols=72 Identities=17% Similarity=0.366 Sum_probs=52.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec--c---cchHHhh-------cCCCcEE
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK--P---LSEMLSC-------AADADVV 313 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~--~---~~~~~~~-------l~~aDVV 313 (513)
++++|.|+ |++|+.+++.|...|++ |++++|+.++.+++.++++. .+.+. + .+++.+. ....|++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l 78 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHK-VIATGRRQERLQELKDELGD-NLYIAQLDVRNRAAIEEMLASLPAEWCNIDIL 78 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCT-TEEEEECCTTCHHHHHHHHHTSCTTTCCCCEE
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhcC-ceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEE
Confidence 46899998 99999999999999985 99999999988888777653 11211 1 1222222 2368999
Q ss_pred EEcCCCC
Q 010322 314 FTSTASE 320 (513)
Q Consensus 314 I~AT~s~ 320 (513)
|++.+..
T Consensus 79 vnnAg~~ 85 (248)
T 3asu_A 79 VNNAGLA 85 (248)
T ss_dssp EECCCCC
T ss_pred EECCCcC
Confidence 9998754
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.006 Score=61.00 Aligned_cols=74 Identities=11% Similarity=0.135 Sum_probs=53.2
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCC----c--ceeecccchHHhhcCCCcEEEEcCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNG----V--EIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~----~--~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
.+|.|||+|.+|..++..|...|. .++.++|.+.++++..+..+.. . ...+.. .+..+.++++|+||-+.|.
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~-~~d~~~~~~aDvVvitAG~ 79 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG-GADYSLLKGSEIIVVTAGL 79 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEE-ESCGGGGTTCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEec-CCCHHHhCCCCEEEEecCC
Confidence 479999999999999999988764 7899999998776554444421 0 111111 2224568899999999987
Q ss_pred Cc
Q 010322 320 EA 321 (513)
Q Consensus 320 ~~ 321 (513)
|.
T Consensus 80 pr 81 (294)
T 2x0j_A 80 AR 81 (294)
T ss_dssp CC
T ss_pred CC
Confidence 74
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0025 Score=68.04 Aligned_cols=75 Identities=19% Similarity=0.281 Sum_probs=53.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhCCc---ce----------eecccchHHhhcCCCcE
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKG-CTKMVVVNRSEERVAAICEELNGV---EI----------IYKPLSEMLSCAADADV 312 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G-~~~V~v~nRs~~ra~~la~~~g~~---~~----------~~~~~~~~~~~l~~aDV 312 (513)
.+|.|||+|-||..++..|...| ..+|+++||++++++.+.+..... .. .+....+..+.+.++|+
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv 89 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL 89 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence 58999999999999999999984 236999999999987765311000 00 01112344455678999
Q ss_pred EEEcCCCCc
Q 010322 313 VFTSTASEA 321 (513)
Q Consensus 313 VI~AT~s~~ 321 (513)
||.|++.|.
T Consensus 90 vii~Vptp~ 98 (481)
T 2o3j_A 90 IFISVNTPT 98 (481)
T ss_dssp EEECCCCCB
T ss_pred EEEecCCcc
Confidence 999988864
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0044 Score=59.95 Aligned_cols=47 Identities=17% Similarity=0.303 Sum_probs=40.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL 290 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~ 290 (513)
++.+++++|.|+ |++|+.+++.|...|+ +|++++|+.++.+.+.+++
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~ 49 (260)
T 2qq5_A 2 PMNGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEA 49 (260)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHH
Confidence 357899999998 9999999999999998 4999999998877766654
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.003 Score=60.61 Aligned_cols=59 Identities=15% Similarity=0.250 Sum_probs=44.7
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhc-CCCcEEEEcCCCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCA-ADADVVFTSTASE 320 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l-~~aDVVI~AT~s~ 320 (513)
+|.|||+|.||+.+++.|...|+.-+.++||+. +++. .++++.+.+ .++|+||.||+..
T Consensus 2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~~-------------~~~~~~~l~~~~~DvVv~~~~~~ 61 (236)
T 2dc1_A 2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHEK-------------MVRGIDEFLQREMDVAVEAASQQ 61 (236)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCTT-------------EESSHHHHTTSCCSEEEECSCHH
T ss_pred EEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chhh-------------hcCCHHHHhcCCCCEEEECCCHH
Confidence 799999999999999999877885447999984 3211 123444555 6899999999865
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0055 Score=61.83 Aligned_cols=46 Identities=26% Similarity=0.401 Sum_probs=39.6
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEe-CCHHHHHHHHHHh
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVN-RSEERVAAICEEL 290 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~n-Rs~~ra~~la~~~ 290 (513)
+.+++++|.|+ |++|+.+++.|...|++ |++++ |+.++++++++++
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G~~-Vv~~~~r~~~~~~~~~~~l 91 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEGYA-VCLHYHRSAAEANALSATL 91 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHH
Confidence 67899999998 99999999999999985 88888 9998887776654
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0045 Score=63.26 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=53.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCCcc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASEAP 322 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~~~ 322 (513)
..+|+|||+|.||...+..|... +++-+.++++++++++ .++.++. . .+.+..+.+. +.|+|+.||+....
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~-~a~~~g~---~--~~~~~~~ll~~~~~D~V~i~tp~~~h 78 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKRE-AAAQKGL---K--IYESYEAVLADEKVDAVLIATPNDSH 78 (359)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHH-HHHTTTC---C--BCSCHHHHHHCTTCCEEEECSCGGGH
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHH-HHHhcCC---c--eeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence 35799999999999999998876 5554568899999884 5666653 1 2345555543 78999999988654
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0061 Score=59.88 Aligned_cols=77 Identities=22% Similarity=0.356 Sum_probs=53.0
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeC-CHHHHHHHHHHhCC--cceee-----cccchHHhh------
Q 010322 242 SSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNR-SEERVAAICEELNG--VEIIY-----KPLSEMLSC------ 306 (513)
Q Consensus 242 ~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nR-s~~ra~~la~~~g~--~~~~~-----~~~~~~~~~------ 306 (513)
..+.+++++|.|+ |++|+.+++.|...|++ |++++| +.++.+.+++++.. ..+.+ ...+++.+.
T Consensus 25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 103 (280)
T 4da9_A 25 TQKARPVAIVTGGRRGIGLGIARALAASGFD-IAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVA 103 (280)
T ss_dssp SCCCCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHH
T ss_pred hccCCCEEEEecCCCHHHHHHHHHHHHCCCe-EEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 3578899999998 99999999999999995 888874 77777666665421 11111 122233322
Q ss_pred -cCCCcEEEEcCCC
Q 010322 307 -AADADVVFTSTAS 319 (513)
Q Consensus 307 -l~~aDVVI~AT~s 319 (513)
....|++|++.+.
T Consensus 104 ~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 104 EFGRIDCLVNNAGI 117 (280)
T ss_dssp HHSCCCEEEEECC-
T ss_pred HcCCCCEEEECCCc
Confidence 2478999999876
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0038 Score=62.98 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=55.3
Q ss_pred CCeEEEEcccHHHH-HHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCCcc
Q 010322 246 TARMLVIGAGKMGK-LVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASEAP 322 (513)
Q Consensus 246 g~~VlVIGaG~mG~-~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~~~ 322 (513)
..+|.|||+|.+|. ..+..|...|++-+.|+++++++++.+++++++. . .+.+..+.+. +.|+|+.||+....
T Consensus 4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~--~--~~~~~~~ll~~~~~D~V~i~tp~~~h 79 (336)
T 2p2s_A 4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSV--P--FAASAEQLITDASIDLIACAVIPCDR 79 (336)
T ss_dssp CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTC--C--BCSCHHHHHTCTTCCEEEECSCGGGH
T ss_pred ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCC--c--ccCCHHHHhhCCCCCEEEEeCChhhH
Confidence 35899999999996 5677776667765679999999999999998542 1 2345555554 68999999987644
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0069 Score=60.77 Aligned_cols=73 Identities=22% Similarity=0.325 Sum_probs=49.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHH---HHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEE---RVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~---ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
...+|.|||+|.||..++..+...|. .+|.++|++++ .+.++.. +....+. ...+. +.+.+||+||.+.+.+
T Consensus 13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~-~~~~~i~--~t~d~-~~l~~aD~Vi~aag~~ 88 (303)
T 2i6t_A 13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEI-FNLPNVE--ISKDL-SASAHSKVVIFTVNSL 88 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHH-HTCTTEE--EESCG-GGGTTCSEEEECCCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhh-hcCCCeE--EeCCH-HHHCCCCEEEEcCCCC
Confidence 45789999999999999999988875 46999999874 2334443 2211222 22454 6689999999998776
Q ss_pred c
Q 010322 321 A 321 (513)
Q Consensus 321 ~ 321 (513)
.
T Consensus 89 ~ 89 (303)
T 2i6t_A 89 G 89 (303)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0063 Score=60.17 Aligned_cols=77 Identities=14% Similarity=0.286 Sum_probs=55.0
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCC--eEEEEeCCHHHHHHHHHHhC----Ccceee-----cccchHHhh-----
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCT--KMVVVNRSEERVAAICEELN----GVEIIY-----KPLSEMLSC----- 306 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~--~V~v~nRs~~ra~~la~~~g----~~~~~~-----~~~~~~~~~----- 306 (513)
+.|++++|.|+ |+||+.+++.|...|+. +|++++|+.++++++++++. +..+.+ ...+++.+.
T Consensus 31 l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 110 (287)
T 3rku_A 31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLP 110 (287)
T ss_dssp HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSC
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 47899999998 99999999999998873 69999999998887776652 111111 122233322
Q ss_pred --cCCCcEEEEcCCCC
Q 010322 307 --AADADVVFTSTASE 320 (513)
Q Consensus 307 --l~~aDVVI~AT~s~ 320 (513)
....|++|++.+..
T Consensus 111 ~~~g~iD~lVnnAG~~ 126 (287)
T 3rku_A 111 QEFKDIDILVNNAGKA 126 (287)
T ss_dssp GGGCSCCEEEECCCCC
T ss_pred HhcCCCCEEEECCCcC
Confidence 23689999988753
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0056 Score=59.26 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=52.5
Q ss_pred CCCCCeEEEEcc---cHHHHHHHHHHHHcCCCeEEEEeCCHH---HHHHHHHHhCCcceeecc---cchHHhhc------
Q 010322 243 SHATARMLVIGA---GKMGKLVIKHLVAKGCTKMVVVNRSEE---RVAAICEELNGVEIIYKP---LSEMLSCA------ 307 (513)
Q Consensus 243 ~l~g~~VlVIGa---G~mG~~ia~~L~~~G~~~V~v~nRs~~---ra~~la~~~g~~~~~~~~---~~~~~~~l------ 307 (513)
++.+++++|.|+ |.+|+.+++.|...|++ |++++|+.+ ..+++....+.......+ .+++.+.+
T Consensus 5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (261)
T 2wyu_A 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAE-VALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEA 83 (261)
T ss_dssp CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCE-EEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999998 69999999999999985 999999875 444555544421111111 12222222
Q ss_pred -CCCcEEEEcCCCC
Q 010322 308 -ADADVVFTSTASE 320 (513)
Q Consensus 308 -~~aDVVI~AT~s~ 320 (513)
...|+||++.+..
T Consensus 84 ~g~iD~lv~~Ag~~ 97 (261)
T 2wyu_A 84 FGGLDYLVHAIAFA 97 (261)
T ss_dssp HSSEEEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 3789999998764
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=96.35 E-value=0.004 Score=61.09 Aligned_cols=46 Identities=26% Similarity=0.434 Sum_probs=40.2
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL 290 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~ 290 (513)
+.+++|+|.|+ |++|+.+++.|...|+ +|++++|+.++.+.+++++
T Consensus 26 ~~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~ 72 (286)
T 1xu9_A 26 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHC 72 (286)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHH
Confidence 57899999999 9999999999999998 4999999998887766543
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0075 Score=58.98 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=52.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCC------------HHHHHHHHHHh---CCcceee-----cccc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRS------------EERVAAICEEL---NGVEIIY-----KPLS 301 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs------------~~ra~~la~~~---g~~~~~~-----~~~~ 301 (513)
++.|++++|.|+ |++|+.+++.|...|++ |++++|+ .++..+..+.+ +. .+.+ ...+
T Consensus 7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~ 84 (281)
T 3s55_A 7 DFEGKTALITGGARGMGRSHAVALAEAGAD-IAICDRCENSDVVGYPLATADDLAETVALVEKTGR-RCISAKVDVKDRA 84 (281)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHH
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCccccccccccccHHHHHHHHHHHHhcCC-eEEEEeCCCCCHH
Confidence 578999999998 99999999999999995 9999996 55554444332 22 1111 1112
Q ss_pred hHHhh-------cCCCcEEEEcCCCC
Q 010322 302 EMLSC-------AADADVVFTSTASE 320 (513)
Q Consensus 302 ~~~~~-------l~~aDVVI~AT~s~ 320 (513)
++.+. ....|++|++.+..
T Consensus 85 ~v~~~~~~~~~~~g~id~lv~nAg~~ 110 (281)
T 3s55_A 85 ALESFVAEAEDTLGGIDIAITNAGIS 110 (281)
T ss_dssp HHHHHHHHHHHHHTCCCEEEECCCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 22222 34789999998754
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0026 Score=62.17 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=50.9
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcce--eecccchHHhh-------cCCCcE
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEI--IYKPLSEMLSC-------AADADV 312 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~--~~~~~~~~~~~-------l~~aDV 312 (513)
++.+++++|.|+ |+||+.+++.|...|++ |++++|+.++++++... ....+ .+...+++.+. ....|+
T Consensus 13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~ 90 (266)
T 3p19_A 13 GSMKKLVVITGASSGIGEAIARRFSEEGHP-LLLLARRVERLKALNLP-NTLCAQVDVTDKYTFDTAITRAEKIYGPADA 90 (266)
T ss_dssp --CCCEEEEESTTSHHHHHHHHHHHHTTCC-EEEEESCHHHHHTTCCT-TEEEEECCTTCHHHHHHHHHHHHHHHCSEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHhhcC-CceEEEecCCCHHHHHHHHHHHHHHCCCCCE
Confidence 467899999999 99999999999999995 99999998876543221 00001 11111222222 247899
Q ss_pred EEEcCCCC
Q 010322 313 VFTSTASE 320 (513)
Q Consensus 313 VI~AT~s~ 320 (513)
+|++.+..
T Consensus 91 lvnnAg~~ 98 (266)
T 3p19_A 91 IVNNAGMM 98 (266)
T ss_dssp EEECCCCC
T ss_pred EEECCCcC
Confidence 99998764
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0051 Score=59.28 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=51.3
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchH---HhhcCCCcEEEEcC
Q 010322 242 SSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEM---LSCAADADVVFTST 317 (513)
Q Consensus 242 ~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~---~~~l~~aDVVI~AT 317 (513)
..+.+++|+|.|+ |.+|+.+++.|...|++ |++++|+.+..++ ++......+..++. .+.+.+.|+||++.
T Consensus 15 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~iD~lv~~A 89 (249)
T 1o5i_A 15 LGIRDKGVLVLAASRGIGRAVADVLSQEGAE-VTICARNEELLKR----SGHRYVVCDLRKDLDLLFEKVKEVDILVLNA 89 (249)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH----TCSEEEECCTTTCHHHHHHHSCCCSEEEECC
T ss_pred hccCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCCHHHHHh----hCCeEEEeeHHHHHHHHHHHhcCCCEEEECC
Confidence 3578999999999 99999999999999984 9999999754432 33211111111222 23344899999998
Q ss_pred CCC
Q 010322 318 ASE 320 (513)
Q Consensus 318 ~s~ 320 (513)
+..
T Consensus 90 g~~ 92 (249)
T 1o5i_A 90 GGP 92 (249)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.006 Score=58.78 Aligned_cols=73 Identities=14% Similarity=0.227 Sum_probs=49.8
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh---CCcceeec--c---cchHHhhc-------
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL---NGVEIIYK--P---LSEMLSCA------- 307 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~---g~~~~~~~--~---~~~~~~~l------- 307 (513)
+.+++++|.|+ |.+|+.+++.|...|+ +|++++|+.+ +...+++ +. .+.+. + .+++.+.+
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~--~~~~~~l~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~ 77 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDP--APALAEIARHGV-KAVHHPADLSDVAQIEALFALAEREF 77 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCC--HHHHHHHHTTSC-CEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch--HHHHHHHHhcCC-ceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 56899999999 9999999999999998 4999999865 2333333 21 11211 1 12233333
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|+||++.+..
T Consensus 78 g~id~lv~~Ag~~ 90 (255)
T 2q2v_A 78 GGVDILVNNAGIQ 90 (255)
T ss_dssp SSCSEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 3799999998754
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.011 Score=57.69 Aligned_cols=76 Identities=20% Similarity=0.301 Sum_probs=52.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEE-eCCHHHHHHHHHHh---CCcceeec-----ccchHHhh------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVV-NRSEERVAAICEEL---NGVEIIYK-----PLSEMLSC------ 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~-nRs~~ra~~la~~~---g~~~~~~~-----~~~~~~~~------ 306 (513)
++.|++++|.|+ |+||+.+++.|...|++ |+++ .++.++.+.+++++ +. .+.+. ..+++.+.
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (271)
T 3v2g_A 28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAA-VALTYVNAAERAQAVVSEIEQAGG-RAVAIRADNRDAEAIEQAIRETVE 105 (271)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHH
Confidence 578999999998 99999999999999996 7776 45556666666554 22 11111 11222222
Q ss_pred -cCCCcEEEEcCCCC
Q 010322 307 -AADADVVFTSTASE 320 (513)
Q Consensus 307 -l~~aDVVI~AT~s~ 320 (513)
....|++|++.+..
T Consensus 106 ~~g~iD~lvnnAg~~ 120 (271)
T 3v2g_A 106 ALGGLDILVNSAGIW 120 (271)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HcCCCcEEEECCCCC
Confidence 23789999998764
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0056 Score=58.25 Aligned_cols=75 Identities=15% Similarity=0.257 Sum_probs=49.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEE-eCCHHHHHHHHHHh---CCcceeec--cc---chHHhhc------
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVV-NRSEERVAAICEEL---NGVEIIYK--PL---SEMLSCA------ 307 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~-nRs~~ra~~la~~~---g~~~~~~~--~~---~~~~~~l------ 307 (513)
+.+++|+|.|+ |.+|+.+++.|...|++ |+++ +|+.++.+.+.+.+ +. .+.+. +. +++.+.+
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G~~-V~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGAN-IVLNGSPASTSLDATAEEFKAAGI-NVVVAKGDVKNPEDVENMVKTAMDA 80 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEECTTCSHHHHHHHHHHHTTC-CEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCcCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHh
Confidence 56899999998 99999999999999985 7777 67766665555443 21 11111 11 2232222
Q ss_pred -CCCcEEEEcCCCC
Q 010322 308 -ADADVVFTSTASE 320 (513)
Q Consensus 308 -~~aDVVI~AT~s~ 320 (513)
...|+||++.+..
T Consensus 81 ~~~~d~vi~~Ag~~ 94 (247)
T 2hq1_A 81 FGRIDILVNNAGIT 94 (247)
T ss_dssp HSCCCEEEECC---
T ss_pred cCCCCEEEECCCCC
Confidence 3789999998754
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0056 Score=62.67 Aligned_cols=72 Identities=8% Similarity=0.111 Sum_probs=54.8
Q ss_pred CeEEEEcccHHHH-HHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCCcc
Q 010322 247 ARMLVIGAGKMGK-LVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGaG~mG~-~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~~~ 322 (513)
-+|+|||+|.++. ..+..+...|++-+.|++++++++++++++++... .+.+..+.+. +.|+|+.||+....
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~----~~~~~~~ll~~~~vD~V~I~tp~~~H 101 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADAR----RIATAEEILEDENIGLIVSAAVSSER 101 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCC----EESCHHHHHTCTTCCEEEECCCHHHH
T ss_pred cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCc----ccCCHHHHhcCCCCCEEEEeCChHHH
Confidence 5899999999985 45666666788767799999999999999987421 2345555554 58999999987643
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=96.29 E-value=0.004 Score=60.64 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=53.4
Q ss_pred CCCCCeEEEEcc---cHHHHHHHHHHHHcCCCeEEEEeCCHHH-HHHHHHHhCCc-c-ee--ecccchHHhh-------c
Q 010322 243 SHATARMLVIGA---GKMGKLVIKHLVAKGCTKMVVVNRSEER-VAAICEELNGV-E-II--YKPLSEMLSC-------A 307 (513)
Q Consensus 243 ~l~g~~VlVIGa---G~mG~~ia~~L~~~G~~~V~v~nRs~~r-a~~la~~~g~~-~-~~--~~~~~~~~~~-------l 307 (513)
.+.+++++|.|+ |++|+.+++.|...|++ |++++|+.++ .+++.++++.. . +. +...+++.+. .
T Consensus 4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (269)
T 2h7i_A 4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQ-LVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAI 82 (269)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCE-EEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCchHHHHHHHHHHCCCE-EEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHh
Confidence 467899999994 99999999999999985 9999998766 35666555421 1 11 1111222222 2
Q ss_pred C---CCcEEEEcCCCC
Q 010322 308 A---DADVVFTSTASE 320 (513)
Q Consensus 308 ~---~aDVVI~AT~s~ 320 (513)
. ..|++|++.+..
T Consensus 83 g~~~~iD~lv~nAg~~ 98 (269)
T 2h7i_A 83 GAGNKLDGVVHSIGFM 98 (269)
T ss_dssp CTTCCEEEEEECCCCC
T ss_pred CCCCCceEEEECCccC
Confidence 3 789999998754
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0082 Score=59.50 Aligned_cols=77 Identities=16% Similarity=0.271 Sum_probs=53.3
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCC------------HHHHHHHHHHh---CCcceeec-----cc
Q 010322 242 SSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRS------------EERVAAICEEL---NGVEIIYK-----PL 300 (513)
Q Consensus 242 ~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs------------~~ra~~la~~~---g~~~~~~~-----~~ 300 (513)
.++.|++++|.|+ |+||+.+++.|...|++ |++++|+ .+++.+..+++ +. .+.+. ..
T Consensus 24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~ 101 (299)
T 3t7c_A 24 GKVEGKVAFITGAARGQGRSHAITLAREGAD-IIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGR-RIIASQVDVRDF 101 (299)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCH
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEecccccccccccccCHHHHHHHHHHHHhcCC-ceEEEECCCCCH
Confidence 3578999999998 99999999999999995 8888886 66665555443 22 11111 11
Q ss_pred chHHhh-------cCCCcEEEEcCCCC
Q 010322 301 SEMLSC-------AADADVVFTSTASE 320 (513)
Q Consensus 301 ~~~~~~-------l~~aDVVI~AT~s~ 320 (513)
+++.+. ....|++|++.+..
T Consensus 102 ~~v~~~~~~~~~~~g~iD~lv~nAg~~ 128 (299)
T 3t7c_A 102 DAMQAAVDDGVTQLGRLDIVLANAALA 128 (299)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 222222 34789999988754
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.001 Score=63.51 Aligned_cols=75 Identities=19% Similarity=0.321 Sum_probs=52.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcce---eecccchHHhhcCCCcEEEEcCCCC
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEI---IYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~---~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
..++|+|.|+ |.+|+.+++.|...|..+|++++|+++++..+... .... .+...+++.+.+.++|+||.+.+..
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~--~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~ 99 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPT--NSQIIMGDVLNHAALKQAMQGQDIVYANLTGE 99 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCT--TEEEEECCTTCHHHHHHHHTTCSEEEEECCST
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccC--CcEEEEecCCCHHHHHHHhcCCCEEEEcCCCC
Confidence 4678999996 99999999999999933699999998765332110 1111 1122335666788999999887765
Q ss_pred c
Q 010322 321 A 321 (513)
Q Consensus 321 ~ 321 (513)
.
T Consensus 100 ~ 100 (236)
T 3qvo_A 100 D 100 (236)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0079 Score=59.01 Aligned_cols=77 Identities=14% Similarity=0.206 Sum_probs=52.2
Q ss_pred CCCCCeEEEEcc---cHHHHHHHHHHHHcCCCeEEEEeCCHH---HHHHHHHHhCCcceeeccc---chHHhh-------
Q 010322 243 SHATARMLVIGA---GKMGKLVIKHLVAKGCTKMVVVNRSEE---RVAAICEELNGVEIIYKPL---SEMLSC------- 306 (513)
Q Consensus 243 ~l~g~~VlVIGa---G~mG~~ia~~L~~~G~~~V~v~nRs~~---ra~~la~~~g~~~~~~~~~---~~~~~~------- 306 (513)
.+.|++++|.|+ |++|+.+++.|...|++ |++++|+.+ ..+++....+.......+. +++.+.
T Consensus 18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 96 (285)
T 2p91_A 18 LLEGKRALITGVANERSIAYGIAKSFHREGAQ-LAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEEN 96 (285)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 367899999998 59999999999999985 999999874 4444544444211111111 222222
Q ss_pred cCCCcEEEEcCCCC
Q 010322 307 AADADVVFTSTASE 320 (513)
Q Consensus 307 l~~aDVVI~AT~s~ 320 (513)
....|+||++.+..
T Consensus 97 ~g~iD~lv~~Ag~~ 110 (285)
T 2p91_A 97 WGSLDIIVHSIAYA 110 (285)
T ss_dssp TSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 34789999998764
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0052 Score=64.82 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=55.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHh-CC-cce----------------eecccchHHh
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEEL-NG-VEI----------------IYKPLSEMLS 305 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~-g~-~~~----------------~~~~~~~~~~ 305 (513)
..-+|.|||+|.||+.++..+... |++-+.|++|++++++.+++++ |. ..+ ....+++..+
T Consensus 22 k~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~ee 101 (446)
T 3upl_A 22 KPIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDL 101 (446)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHH
T ss_pred CceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHH
Confidence 346899999999999999887754 5666778999999998888775 51 000 0112355555
Q ss_pred hcC--CCcEEEEcCCCC
Q 010322 306 CAA--DADVVFTSTASE 320 (513)
Q Consensus 306 ~l~--~aDVVI~AT~s~ 320 (513)
.+. +.|+|+.||+.+
T Consensus 102 LL~d~dIDaVviaTp~p 118 (446)
T 3upl_A 102 ILSNPLIDVIIDATGIP 118 (446)
T ss_dssp HHTCTTCCEEEECSCCH
T ss_pred HhcCCCCCEEEEcCCCh
Confidence 554 689999999886
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0041 Score=68.40 Aligned_cols=77 Identities=19% Similarity=0.283 Sum_probs=53.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-------------------HHHHHHHHHhCCc--ceeecccc--
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-------------------ERVAAICEELNGV--EIIYKPLS-- 301 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-------------------~ra~~la~~~g~~--~~~~~~~~-- 301 (513)
.+.+|+|||+|++|..++++|...|+.+|+++|... .|++.+++.+... .+.+.+..
T Consensus 16 ~~s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~~~ 95 (640)
T 1y8q_B 16 AGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDS 95 (640)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEESC
T ss_pred hcCeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 568999999999999999999999999999998642 2454445444211 12222111
Q ss_pred ----h-HHhhcCCCcEEEEcCCCCc
Q 010322 302 ----E-MLSCAADADVVFTSTASEA 321 (513)
Q Consensus 302 ----~-~~~~l~~aDVVI~AT~s~~ 321 (513)
+ ..+.+.++|+||+|+.+..
T Consensus 96 i~~~~~~~~~~~~~DlVvda~Dn~~ 120 (640)
T 1y8q_B 96 IMNPDYNVEFFRQFILVMNALDNRA 120 (640)
T ss_dssp TTSTTSCHHHHTTCSEEEECCSCHH
T ss_pred cchhhhhHhhhcCCCEEEECCCCHH
Confidence 1 1345689999999987643
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0084 Score=57.84 Aligned_cols=74 Identities=20% Similarity=0.216 Sum_probs=54.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCcceeec--c---cchHHhh-------cCCCc
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGVEIIYK--P---LSEMLSC-------AADAD 311 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~~~~~~--~---~~~~~~~-------l~~aD 311 (513)
|++++|.|+ |++|+.+++.|...|. ..|++++|+.++.+++.++++.. +.+. + .+++.+. ....|
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~~~~g~id 80 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDR-FFYVVGDITEDSVLKQLVNAAVKGHGKID 80 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGG-EEEEESCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCc-eEEEECCCCCHHHHHHHHHHHHHhcCCcc
Confidence 688999998 9999999999999864 36888999999988888877531 2211 1 1222222 24789
Q ss_pred EEEEcCCCC
Q 010322 312 VVFTSTASE 320 (513)
Q Consensus 312 VVI~AT~s~ 320 (513)
++|++.+..
T Consensus 81 ~lvnnAg~~ 89 (254)
T 3kzv_A 81 SLVANAGVL 89 (254)
T ss_dssp EEEEECCCC
T ss_pred EEEECCccc
Confidence 999998763
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0066 Score=63.39 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=61.5
Q ss_pred CCeEEEEcccH---HHHHHHHHHHHcC-CCeEE-EEeCCHHHHHHHHHHhCCcceeecccchHHhhc-------CCCcEE
Q 010322 246 TARMLVIGAGK---MGKLVIKHLVAKG-CTKMV-VVNRSEERVAAICEELNGVEIIYKPLSEMLSCA-------ADADVV 313 (513)
Q Consensus 246 g~~VlVIGaG~---mG~~ia~~L~~~G-~~~V~-v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l-------~~aDVV 313 (513)
.-+|+|||+|. ||...+..+...+ ++-+. +++++++++++++++++... ...+.+..+.+ .+.|+|
T Consensus 37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~--~~~~~~~~~ll~~~~~~~~~vD~V 114 (417)
T 3v5n_A 37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDP--SRVYSDFKEMAIREAKLKNGIEAV 114 (417)
T ss_dssp CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCG--GGBCSCHHHHHHHHHHCTTCCSEE
T ss_pred cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCc--ccccCCHHHHHhcccccCCCCcEE
Confidence 35899999999 9999998888765 44333 78999999999999987410 01233444443 358999
Q ss_pred EEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 314 FTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 314 I~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+.||+..... +....+. ..|.-++++=
T Consensus 115 ~I~tp~~~H~---~~~~~al-----~aGkhVl~EK 141 (417)
T 3v5n_A 115 AIVTPNHVHY---AAAKEFL-----KRGIHVICDK 141 (417)
T ss_dssp EECSCTTSHH---HHHHHHH-----TTTCEEEEES
T ss_pred EECCCcHHHH---HHHHHHH-----hCCCeEEEEC
Confidence 9999987542 2222211 1355788774
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.007 Score=59.09 Aligned_cols=76 Identities=21% Similarity=0.241 Sum_probs=52.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeC-CHHHHHHHHHHh---CCcceeec--c---cchHHhh------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNR-SEERVAAICEEL---NGVEIIYK--P---LSEMLSC------ 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nR-s~~ra~~la~~~---g~~~~~~~--~---~~~~~~~------ 306 (513)
++.+++++|.|+ |+||+.+++.|...|++ |++.+| +.++.+.+.+.+ +. .+.+. + .+++.+.
T Consensus 25 ~l~~k~vlVTGas~gIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~v~~~~~~~~~ 102 (269)
T 4dmm_A 25 PLTDRIALVTGASRGIGRAIALELAAAGAK-VAVNYASSAGAADEVVAAIAAAGG-EAFAVKADVSQESEVEALFAAVIE 102 (269)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCChHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHH
Confidence 578999999998 99999999999999995 777777 666666665544 22 11111 1 1222222
Q ss_pred -cCCCcEEEEcCCCC
Q 010322 307 -AADADVVFTSTASE 320 (513)
Q Consensus 307 -l~~aDVVI~AT~s~ 320 (513)
....|++|++.+..
T Consensus 103 ~~g~id~lv~nAg~~ 117 (269)
T 4dmm_A 103 RWGRLDVLVNNAGIT 117 (269)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 24789999987764
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0071 Score=58.89 Aligned_cols=77 Identities=18% Similarity=0.269 Sum_probs=51.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeC-CHHHHHHHHHHhC--Ccceeec--cc---chHHhh-------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNR-SEERVAAICEELN--GVEIIYK--PL---SEMLSC------- 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nR-s~~ra~~la~~~g--~~~~~~~--~~---~~~~~~------- 306 (513)
++.|++|+|.|+ |++|+.+++.|...|++ |++++| +.+..+.+.+.+. +..+.+. +. +++.+.
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 104 (271)
T 4iin_A 26 QFTGKNVLITGASKGIGAEIAKTLASMGLK-VWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQS 104 (271)
T ss_dssp CCSCCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 578999999998 99999999999999995 888888 5555555544432 1111211 11 122222
Q ss_pred cCCCcEEEEcCCCC
Q 010322 307 AADADVVFTSTASE 320 (513)
Q Consensus 307 l~~aDVVI~AT~s~ 320 (513)
....|++|++.+..
T Consensus 105 ~g~id~li~nAg~~ 118 (271)
T 4iin_A 105 DGGLSYLVNNAGVV 118 (271)
T ss_dssp HSSCCEEEECCCCC
T ss_pred cCCCCEEEECCCcC
Confidence 24789999988764
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0016 Score=63.54 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=47.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCC-CcEEEEcCCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAAD-ADVVFTSTAS 319 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~-aDVVI~AT~s 319 (513)
.+++|+|+|+|.+|+.+++.|...|.+ |++++|+..+. ...+......+...+.+.+.+.+ +|+||.+.+.
T Consensus 2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~-V~~~~r~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~~ 73 (286)
T 3gpi_A 2 SLSKILIAGCGDLGLELARRLTAQGHE-VTGLRRSAQPM---PAGVQTLIADVTRPDTLASIVHLRPEILVYCVAA 73 (286)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTCC-EEEEECTTSCC---CTTCCEEECCTTCGGGCTTGGGGCCSEEEECHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCcccc---ccCCceEEccCCChHHHHHhhcCCCCEEEEeCCC
Confidence 357899999999999999999999985 99999986542 11110000111122334445555 9999998753
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0079 Score=61.07 Aligned_cols=74 Identities=15% Similarity=0.142 Sum_probs=52.3
Q ss_pred eEEEEcccHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcce-------------eecccchHHhhcCCCcEE
Q 010322 248 RMLVIGAGKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEI-------------IYKPLSEMLSCAADADVV 313 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~-------------~~~~~~~~~~~l~~aDVV 313 (513)
+|.|+|+|.||+.+++.|... +++-+.+++++++++..+++.+|.... .+....+..+.+.++|+|
T Consensus 4 rVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV 83 (334)
T 2czc_A 4 KVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDII 83 (334)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEE
T ss_pred EEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCEE
Confidence 799999999999999999876 344446778887888777776641100 001123455555689999
Q ss_pred EEcCCCCc
Q 010322 314 FTSTASEA 321 (513)
Q Consensus 314 I~AT~s~~ 321 (513)
+.|||...
T Consensus 84 ~~aTp~~~ 91 (334)
T 2czc_A 84 VDATPGGI 91 (334)
T ss_dssp EECCSTTH
T ss_pred EECCCccc
Confidence 99999875
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0051 Score=56.76 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=51.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc--ceeecccchHHhhcC---CCcEEEEcCCCC
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV--EIIYKPLSEMLSCAA---DADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~--~~~~~~~~~~~~~l~---~aDVVI~AT~s~ 320 (513)
++++|.|+ |.+|+.+++.|... +|++++|++++...+.+.++.. ...+...+++.+.+. +.|+||.+.+..
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~---~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~~ 77 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH---DLLLSGRRAGALAELAREVGARALPADLADELEAKALLEEAGPLDLLVHAVGKA 77 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS---EEEEECSCHHHHHHHHHHHTCEECCCCTTSHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC---CEEEEECCHHHHHHHHHhccCcEEEeeCCCHHHHHHHHHhcCCCCEEEECCCcC
Confidence 47899998 99999999999887 7999999998887777765421 011122233444444 799999998764
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0069 Score=59.11 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=52.4
Q ss_pred CCCCCeEEEEcc---cHHHHHHHHHHHHcCCCeEEEEeCCHH---HHHHHHHHhCCcceeeccc---chHHhh-------
Q 010322 243 SHATARMLVIGA---GKMGKLVIKHLVAKGCTKMVVVNRSEE---RVAAICEELNGVEIIYKPL---SEMLSC------- 306 (513)
Q Consensus 243 ~l~g~~VlVIGa---G~mG~~ia~~L~~~G~~~V~v~nRs~~---ra~~la~~~g~~~~~~~~~---~~~~~~------- 306 (513)
++.+++++|.|+ |++|+.+++.|...|++ |++++|+.+ ..+++....+.......+. +++.+.
T Consensus 3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (275)
T 2pd4_A 3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGAT-LAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKD 81 (275)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCE-EEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467899999998 69999999999999985 999999865 4445555444211111111 222222
Q ss_pred cCCCcEEEEcCCCC
Q 010322 307 AADADVVFTSTASE 320 (513)
Q Consensus 307 l~~aDVVI~AT~s~ 320 (513)
....|++|++.+..
T Consensus 82 ~g~id~lv~nAg~~ 95 (275)
T 2pd4_A 82 LGSLDFIVHSVAFA 95 (275)
T ss_dssp TSCEEEEEECCCCC
T ss_pred cCCCCEEEECCccC
Confidence 34789999998764
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.006 Score=61.04 Aligned_cols=69 Identities=17% Similarity=0.287 Sum_probs=44.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
..+|+|||+|.||..++..+... +++-+.++++++++++. +|. .+..++++.+. .++|+||.||+....
T Consensus 9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~----~g~---~~~~~~~l~~~-~~~DvViiatp~~~h 78 (304)
T 3bio_A 9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF----ELQ---PFRVVSDIEQL-ESVDVALVCSPSREV 78 (304)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-----------CCT---TSCEESSGGGS-SSCCEEEECSCHHHH
T ss_pred CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH----cCC---CcCCHHHHHhC-CCCCEEEECCCchhh
Confidence 35899999999999999999875 45433489999887643 442 12234555444 789999999987644
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0073 Score=59.82 Aligned_cols=75 Identities=20% Similarity=0.312 Sum_probs=51.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCH------HHHHHHHHH-hCCccee---ecccchHHhhcCCCcEEE
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSE------ERVAAICEE-LNGVEII---YKPLSEMLSCAADADVVF 314 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~------~ra~~la~~-~g~~~~~---~~~~~~~~~~l~~aDVVI 314 (513)
.++|+|+|+ |.+|+.+++.|...|.+ |+++.|+. ++...+... -.+..+. +...+++.+++.++|+||
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi 82 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHP-TFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVI 82 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCC-EEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCc-EEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEE
Confidence 578999997 99999999999999974 99999975 444333211 1121111 122234667788999999
Q ss_pred EcCCCCc
Q 010322 315 TSTASEA 321 (513)
Q Consensus 315 ~AT~s~~ 321 (513)
.+++...
T Consensus 83 ~~a~~~~ 89 (321)
T 3c1o_A 83 SALPFPM 89 (321)
T ss_dssp ECCCGGG
T ss_pred ECCCccc
Confidence 9987643
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0087 Score=58.73 Aligned_cols=75 Identities=24% Similarity=0.405 Sum_probs=51.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCC------HHHHHHHHHH-hCCccee---ecccchHHhhcCCCcEEE
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRS------EERVAAICEE-LNGVEII---YKPLSEMLSCAADADVVF 314 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs------~~ra~~la~~-~g~~~~~---~~~~~~~~~~l~~aDVVI 314 (513)
.++|+|+|+ |.+|+.+++.|...|. +|++..|+ ++++..+..- -.+..+. +...+++.+++.++|+||
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi 82 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVI 82 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC-CEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEE
Confidence 478999998 9999999999999997 48899997 4444333211 1121111 112234566778999999
Q ss_pred EcCCCCc
Q 010322 315 TSTASEA 321 (513)
Q Consensus 315 ~AT~s~~ 321 (513)
.+++...
T Consensus 83 ~~a~~~~ 89 (308)
T 1qyc_A 83 STVGSLQ 89 (308)
T ss_dssp ECCCGGG
T ss_pred ECCcchh
Confidence 9987643
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0085 Score=58.51 Aligned_cols=78 Identities=13% Similarity=0.244 Sum_probs=53.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeC-------------CHHHHHHHHHHhC--Ccceeec--c---cc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNR-------------SEERVAAICEELN--GVEIIYK--P---LS 301 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nR-------------s~~ra~~la~~~g--~~~~~~~--~---~~ 301 (513)
.+.|++++|.|+ |+||+.+++.|...|++ |++++| +.+++++..+.+. +..+.+. + .+
T Consensus 8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 86 (277)
T 3tsc_A 8 KLEGRVAFITGAARGQGRAHAVRMAAEGAD-IIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFD 86 (277)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred ccCCCEEEEECCccHHHHHHHHHHHHcCCE-EEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 578999999998 99999999999999995 889988 6666666555432 1111111 1 12
Q ss_pred hHHhh-------cCCCcEEEEcCCCCc
Q 010322 302 EMLSC-------AADADVVFTSTASEA 321 (513)
Q Consensus 302 ~~~~~-------l~~aDVVI~AT~s~~ 321 (513)
++.+. ....|++|++.+...
T Consensus 87 ~v~~~~~~~~~~~g~id~lvnnAg~~~ 113 (277)
T 3tsc_A 87 RLRKVVDDGVAALGRLDIIVANAGVAA 113 (277)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 22222 347899999987643
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.003 Score=64.58 Aligned_cols=73 Identities=11% Similarity=0.160 Sum_probs=53.8
Q ss_pred CCeEEEEcccHHHHH-HHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCCc
Q 010322 246 TARMLVIGAGKMGKL-VIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASEA 321 (513)
Q Consensus 246 g~~VlVIGaG~mG~~-ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~~ 321 (513)
..+|+|||+|.||.. .+..|... +++-+.|++|++++++.++++++... .+.+..+.+. +.|+|+.||+...
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~----~~~~~~~ll~~~~vD~V~i~tp~~~ 80 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIP----VLDNVPAMLNQVPLDAVVMAGPPQL 80 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCC----EESSHHHHHHHSCCSEEEECSCHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCc----ccCCHHHHhcCCCCCEEEEcCCcHH
Confidence 358999999999985 78888776 56545599999999988888875421 2344444443 6799999998754
Q ss_pred c
Q 010322 322 P 322 (513)
Q Consensus 322 ~ 322 (513)
.
T Consensus 81 H 81 (359)
T 3m2t_A 81 H 81 (359)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0082 Score=58.16 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=51.7
Q ss_pred CCCCeEEEEcc---cHHHHHHHHHHHHcCCCeEEEEeCCH---HHHHHHHHHhCCcceeecc---cchHHhh-------c
Q 010322 244 HATARMLVIGA---GKMGKLVIKHLVAKGCTKMVVVNRSE---ERVAAICEELNGVEIIYKP---LSEMLSC-------A 307 (513)
Q Consensus 244 l~g~~VlVIGa---G~mG~~ia~~L~~~G~~~V~v~nRs~---~ra~~la~~~g~~~~~~~~---~~~~~~~-------l 307 (513)
+.+++++|.|+ |.+|+.+++.|...|++ |++++|+. +..+++....+.......+ .+++.+. .
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW 85 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHc
Confidence 67899999998 69999999999999985 99999986 4444554444321111111 1222222 2
Q ss_pred CCCcEEEEcCCCCc
Q 010322 308 ADADVVFTSTASEA 321 (513)
Q Consensus 308 ~~aDVVI~AT~s~~ 321 (513)
...|+||++.+...
T Consensus 86 g~iD~lv~~Ag~~~ 99 (265)
T 1qsg_A 86 PKFDGFVHSIGFAP 99 (265)
T ss_dssp SSEEEEEECCCCCC
T ss_pred CCCCEEEECCCCCC
Confidence 36899999988643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 513 | ||||
| d1gpja3 | 143 | d.58.39.1 (A:1-143) Glutamyl tRNA-reductase cataly | 3e-36 | |
| d1gpja2 | 159 | c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle | 1e-33 | |
| d1gpja1 | 102 | a.151.1.1 (A:303-404) Glutamyl tRNA-reductase dime | 1e-16 | |
| d1e5qa1 | 182 | c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase | 1e-08 | |
| d1yqga2 | 152 | c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas | 0.003 |
| >d1gpja3 d.58.39.1 (A:1-143) Glutamyl tRNA-reductase catalytic, N-terminal domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Glutamyl tRNA-reductase catalytic, N-terminal domain family: Glutamyl tRNA-reductase catalytic, N-terminal domain domain: Glutamyl tRNA-reductase catalytic, N-terminal domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Score = 129 bits (325), Expect = 3e-36
Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 16/158 (10%)
Query: 63 SSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVAL 122
+V +G++ A VE EK E A+ ++ + + +L T NR+E+Y
Sbjct: 2 EDLVSVGITHKEAEVEELEKARFESDE---AVRDIVESFGLSGSVLLQTSNRVEVYAS-- 56
Query: 123 SQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQ 182
G ++ E + + ++ +A +HLF V++GL+S+++GE +IL Q
Sbjct: 57 ----GARDRAEELGDLI-------HDDAWVKRGSEAVRHLFRVASGLESMMVGEQEILRQ 105
Query: 183 VKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNI 220
VK+ + + +F+ AI++GKR R ET I
Sbjct: 106 VKKAYDRAARLGTLDEALKIVFRRAINLGKRAREETRI 143
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 159 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Score = 122 bits (307), Expect = 1e-33
Identities = 59/161 (36%), Positives = 87/161 (54%), Gaps = 6/161 (3%)
Query: 223 GAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEER 282
GAVS+ SAAVELA +L T LV+GAG+MGK V K LV +G ++V NR+ ER
Sbjct: 3 GAVSIGSAAVELAERELGSLHDKTV--LVVGAGEMGKTVAKSLVDRGVRAVLVANRTYER 60
Query: 283 VAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGL 342
+ +L G + E++ A +DVV ++TA+ P+ D V++ +
Sbjct: 61 AVELARDLGGEAV---RFDELVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPI 117
Query: 343 RLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDR 383
L IDI+ PR+V V ++E V +DDL+ + N E R
Sbjct: 118 -LIIDIANPRDVEEGVENIEDVEVRTIDDLRVIARENLERR 157
|
| >d1gpja1 a.151.1.1 (A:303-404) Glutamyl tRNA-reductase dimerization domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 102 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Glutamyl tRNA-reductase dimerization domain superfamily: Glutamyl tRNA-reductase dimerization domain family: Glutamyl tRNA-reductase dimerization domain domain: Glutamyl tRNA-reductase dimerization domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Score = 73.4 bits (180), Expect = 1e-16
Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 8/109 (7%)
Query: 386 KAMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTR 445
+ + + +I EE + L+ + + I+ EL++ L ++
Sbjct: 1 EIPKVEKLIEEELSTVEEELEKLKERRLVADVAKSLHEIKDRELERALRRLKT---GDPE 57
Query: 446 RAVDDLSRGIMNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLE 494
+ D + +L++ + + R AL R L
Sbjct: 58 NVLQDFAEAYTKRLINVLTSAIMELPDEYRR-----AASRALRRASELN 101
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 52.3 bits (124), Expect = 1e-08
Identities = 25/176 (14%), Positives = 59/176 (33%), Gaps = 9/176 (5%)
Query: 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEML 304
AT +L++G+G + + + L G K+ V R+ E + + I +++
Sbjct: 1 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDVNDDA 59
Query: 305 SCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETA 364
+ A+ + F +++A+ + + S +
Sbjct: 60 ALDAEVAKHDLVISLIPYTFHATV------IKSAIRQKKHVVTTSYVSPAMMELDQAAKD 113
Query: 365 RVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFA--AWRDSLETVPTIKKLR 418
V + A K + A+ + ++ A +S P +K+L+
Sbjct: 114 AGITVMNEIGYSAMAKLVGVPCAVAVKFVLDGTISDRGVLAPMNSKINDPLMKELK 169
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Score = 36.1 bits (82), Expect = 0.003
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 252 IGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280
+G G M V LV +G ++ + NR
Sbjct: 6 LGGGNMAAAVAGGLVKQGGYRIYIANRGA 34
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 513 | |||
| d1gpja3 | 143 | Glutamyl tRNA-reductase catalytic, N-terminal doma | 100.0 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 99.96 | |
| d1gpja1 | 102 | Glutamyl tRNA-reductase dimerization domain {Archa | 99.69 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 99.45 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 99.41 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 99.35 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 99.35 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 99.27 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 99.21 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 99.07 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 99.02 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 98.99 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 98.9 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 98.9 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 98.87 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.83 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 98.83 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 98.77 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 98.75 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 98.73 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 98.72 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 98.72 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 98.68 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 98.67 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 98.63 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 98.59 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 98.52 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.47 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 98.38 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 98.36 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 98.32 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 98.3 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 98.3 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 98.29 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 98.25 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 98.24 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 98.24 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 98.23 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 98.19 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 98.18 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 98.1 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 98.09 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 98.06 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 98.0 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.94 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 97.92 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 97.84 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.83 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 97.82 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.8 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 97.76 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 97.74 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.73 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 97.72 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 97.71 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 97.7 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 97.68 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 97.68 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.67 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.66 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.65 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 97.64 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.63 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.63 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 97.6 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.58 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 97.56 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 97.54 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.53 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 97.53 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.52 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 97.52 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 97.51 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.5 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 97.48 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.47 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 97.46 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 97.43 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.42 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.41 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 97.39 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.38 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 97.36 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.36 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.35 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.33 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.33 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 97.33 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 97.32 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.31 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 97.29 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.29 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 97.28 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.28 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 97.26 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 97.25 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.25 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.24 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.22 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 97.22 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 97.22 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 97.21 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.2 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.19 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 97.19 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.17 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 97.16 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 97.15 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 97.12 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 97.11 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 97.11 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 97.1 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 97.1 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 97.07 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.07 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 97.03 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 97.03 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 97.03 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 97.03 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 97.02 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 97.01 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 96.99 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 96.98 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 96.97 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.96 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 96.95 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 96.94 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 96.91 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 96.91 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 96.9 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 96.86 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 96.82 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 96.82 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 96.82 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 96.82 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 96.81 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 96.73 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 96.72 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 96.68 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 96.67 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.66 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 96.64 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 96.63 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.54 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 96.53 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 96.51 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 96.5 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 96.48 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 96.41 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 96.38 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 96.37 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 96.33 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 96.3 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.3 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 96.3 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 96.29 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.24 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.23 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 96.22 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 96.22 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 96.19 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 96.18 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 96.15 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 96.1 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 96.07 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 96.06 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 96.04 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 95.98 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 95.95 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 95.95 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 95.92 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 95.9 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 95.89 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 95.79 | |
| d1rjwa1 | 171 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.79 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 95.78 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.77 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 95.74 | |
| d1pl8a1 | 185 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.71 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 95.65 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 95.65 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.64 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 95.56 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 95.43 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 95.27 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 95.18 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 95.15 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 95.15 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 95.08 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 95.04 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.02 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 94.99 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 94.97 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 94.92 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 94.85 | |
| d1e3ja1 | 178 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.82 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 94.81 | |
| d1gq2a1 | 298 | Mitochondrial NAD(P)-dependent malic enzyme {Domes | 94.8 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 94.8 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.8 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 94.68 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.68 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 94.63 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 94.51 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.42 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 94.33 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 94.32 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 94.24 | |
| d1h2ba1 | 171 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.16 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 94.15 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 94.07 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 94.03 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 94.02 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 94.01 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 93.75 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 93.73 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 93.73 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 93.73 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 93.71 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 93.68 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 93.68 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 93.65 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 93.64 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 93.64 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 93.58 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 93.57 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 93.46 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 93.46 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 93.45 | |
| d1o0sa1 | 308 | Mitochondrial NAD(P)-dependent malic enzyme {Pig r | 93.44 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 93.44 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 93.44 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 93.43 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 93.22 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 93.21 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 93.16 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 93.13 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 93.11 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 93.1 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 92.93 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 92.86 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 92.81 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 92.79 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 92.74 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 92.67 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 92.63 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 92.62 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 92.61 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 92.58 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 92.54 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 92.44 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 92.22 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 92.17 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 92.11 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 91.93 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 91.88 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 91.86 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 91.86 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 91.75 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 91.67 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 91.65 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 91.42 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 91.3 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 91.29 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 91.26 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 91.22 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 90.93 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 90.84 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 90.83 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 90.56 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 90.54 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 90.41 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 90.39 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 90.34 | |
| d1f8fa1 | 194 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 90.32 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 90.27 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 90.19 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 90.14 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 90.13 | |
| d1jvba1 | 177 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 90.06 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 90.01 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 89.98 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 89.93 | |
| d1llua1 | 175 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.84 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 89.71 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 89.69 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 89.54 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 89.34 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 89.26 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 89.2 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 89.17 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 89.05 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 89.02 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 88.94 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 88.78 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 88.71 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 88.63 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 88.54 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 88.48 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 88.39 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 88.05 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 88.05 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 87.88 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 87.72 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 87.52 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 87.43 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 87.38 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 87.23 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 87.13 | |
| d2ax3a2 | 211 | Hypothetical protein TM0922, N-terminal domain {Th | 86.72 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 86.53 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 86.48 | |
| d1tuga1 | 310 | Aspartate carbamoyltransferase catalytic subunit { | 86.45 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 86.39 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 86.13 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 86.09 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 86.05 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 85.8 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 85.79 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 85.59 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 85.13 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 84.69 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 84.68 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 84.51 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 84.49 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 84.19 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 84.1 | |
| d1u8fo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 83.98 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 83.96 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 83.88 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 83.75 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 82.91 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 82.87 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 82.74 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 82.15 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 82.12 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 81.95 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 81.58 | |
| d1vj0a1 | 184 | Hypothetical protein TM0436 {Thermotoga maritima [ | 81.44 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 81.3 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.93 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 80.92 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 80.9 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 80.69 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 80.59 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 80.57 |
| >d1gpja3 d.58.39.1 (A:1-143) Glutamyl tRNA-reductase catalytic, N-terminal domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Glutamyl tRNA-reductase catalytic, N-terminal domain family: Glutamyl tRNA-reductase catalytic, N-terminal domain domain: Glutamyl tRNA-reductase catalytic, N-terminal domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=100.00 E-value=1.7e-41 Score=304.92 Aligned_cols=142 Identities=28% Similarity=0.468 Sum_probs=125.3
Q ss_pred ceEEEEEeecCCCCHHHHhhhcCCCCChHHHHHHHhccCCCcceEEeeecCeeEEEEEeccccccHHHHHHHHHHhcCCC
Q 010322 63 SSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIP 142 (513)
Q Consensus 63 ~~i~~igi~hk~apv~~RE~~a~~~~~~~~~l~~l~~~~~i~e~viLsTCNR~EiY~~~~~~~~~~~~~~~~l~~~~~~~ 142 (513)
++|.+||+|||++|+++||+|+|++++. +..|.+.+++.|++|||||||||||+++... .. +++.+.
T Consensus 2 ~~l~~igi~h~~a~~~~re~~~~~~~~~---~~~l~~~~~~~e~vvLsTCNRtEiY~~~~~~--~~----~~~~~~---- 68 (143)
T d1gpja3 2 EDLVSVGITHKEAEVEELEKARFESDEA---VRDIVESFGLSGSVLLQTSNRVEVYASGARD--RA----EELGDL---- 68 (143)
T ss_dssp TTEEEEEEETTTSCHHHHHHHSCCCTTH---HHHHHHHHTCSEEEEEEETTEEEEEEESCTT--CH----HHHHHT----
T ss_pred CcEEEEEEECCcCCHHHHHHhcCChHHH---HHHHHhccCCceEEEEEecCCeEEEEeccch--hH----HHHhhc----
Confidence 3689999999999999999999998764 4566667789999999999999999986532 22 233322
Q ss_pred hhhhhhHHHHhcCCceeeeeeeeccCCCCcccCcchhhchHHHHHHHhHhcCcccchhhHHHHHHHhhCccccccccc
Q 010322 143 VAELCEHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNI 220 (513)
Q Consensus 143 ~~~~~~~~~~~~G~eav~hlf~V~sGldS~vvGE~qIlgQvk~A~~~a~~~~~~g~~L~~lf~~ai~v~k~Vr~et~i 220 (513)
+.+++|.+.|.+|+.|||+|+|||||||+||+||+||||+||+.|++.|++|+.|+.+|+.|++++|+||++|+|
T Consensus 69 ---~~~~~~~~~g~~A~~HLfrVasGLdS~VvGE~qIlgQvK~A~~~a~~~g~~~~~L~~lf~~a~~~aKrVRteT~I 143 (143)
T d1gpja3 69 ---IHDDAWVKRGSEAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGTLDEALKIVFRRAINLGKRAREETRI 143 (143)
T ss_dssp ---TCTTCEEEEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSST
T ss_pred ---cccceeeecHHHHHHHHHHHHHhhHhHhhCcHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcccCC
Confidence 346788999999999999999999999999999999999999999999999999999999999999999999986
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=99.96 E-value=8.8e-30 Score=232.95 Aligned_cols=159 Identities=37% Similarity=0.523 Sum_probs=143.7
Q ss_pred cCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc
Q 010322 221 AAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL 300 (513)
Q Consensus 221 ~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~ 300 (513)
+.+++|++++|++++.+.+ +++.+++|+|||+|+||+.++++|...|+++|+|+|||.+++++++.+++. .+.++
T Consensus 1 s~g~vSv~~aAv~la~~~~--~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~---~~~~~ 75 (159)
T d1gpja2 1 SEGAVSIGSAAVELAEREL--GSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG---EAVRF 75 (159)
T ss_dssp TCSCCSHHHHHHHHHHHHH--SCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC---EECCG
T ss_pred CCCcccHHHHHHHHHHHHh--CCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc---ccccc
Confidence 4689999999999999988 589999999999999999999999999999999999999999999999975 56788
Q ss_pred chHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEccCCHHHHHHHHH
Q 010322 301 SEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANK 380 (513)
Q Consensus 301 ~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~iDdl~~v~~~~~ 380 (513)
+++.+.+..+|+||+||++++|++++++++...+.+ ..+++.++||+++|||++|.+.+++|+++||+||+..+++.|.
T Consensus 76 ~~~~~~l~~~Divi~atss~~~ii~~~~i~~~~~~r-~~~~~~~iiDlavPr~vd~~v~~~~~v~l~~ld~l~~~~~~n~ 154 (159)
T d1gpja2 76 DELVDHLARSDVVVSATAAPHPVIHVDDVREALRKR-DRRSPILIIDIANPRDVEEGVENIEDVEVRTIDDLRVIARENL 154 (159)
T ss_dssp GGHHHHHHTCSEEEECCSSSSCCBCHHHHHHHHHHC-SSCCCEEEEECCSSCSBCTTGGGSTTEEEEEHHHHHHHHHHHH
T ss_pred hhHHHHhccCCEEEEecCCCCccccHhhhHHHHHhc-ccCCCeEEEeecCCCCcChhhhccCCeEEEeHHHHHHHHHHHH
Confidence 999999999999999999999999999887644322 1346789999999999999999999999999999999999999
Q ss_pred HHHHH
Q 010322 381 EDRLR 385 (513)
Q Consensus 381 ~~R~~ 385 (513)
+.|.+
T Consensus 155 ~~R~~ 159 (159)
T d1gpja2 155 ERRRK 159 (159)
T ss_dssp HHHHT
T ss_pred HHhcC
Confidence 88753
|
| >d1gpja1 a.151.1.1 (A:303-404) Glutamyl tRNA-reductase dimerization domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Glutamyl tRNA-reductase dimerization domain superfamily: Glutamyl tRNA-reductase dimerization domain family: Glutamyl tRNA-reductase dimerization domain domain: Glutamyl tRNA-reductase dimerization domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=99.69 E-value=1.4e-17 Score=140.14 Aligned_cols=101 Identities=15% Similarity=0.192 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHH
Q 010322 387 AMEAQAIITEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIMNKLLHGPMQH 466 (513)
Q Consensus 387 ~~~ae~iI~e~~~~f~~w~~~~~~~p~I~~lr~~~e~i~~~el~~~~~kl~~~~~~~~~~~i~~~~~~~~~k~lh~P~~~ 466 (513)
++.|+.||++++..|..|++.+.+.|+|++||++++.+++.|++|++++|+++ +++++|++++++++|||||.|+..
T Consensus 2 i~~AE~II~ee~~~F~~w~~~~~~~p~I~~lr~~~e~ir~~Elekal~kl~~~---~~e~vie~l~~~l~nKllH~pt~~ 78 (102)
T d1gpja1 2 IPKVEKLIEEELSTVEEELEKLKERRLVADVAKSLHEIKDRELERALRRLKTG---DPENVLQDFAEAYTKRLINVLTSA 78 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC--------CCTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999752 345799999999999999999999
Q ss_pred HhhcCCCCCchhhhHHHHHHHHHHhCCCC
Q 010322 467 LRCDGSDSRTLDETLENMHALNRMFGLET 495 (513)
Q Consensus 467 lk~~~~~~~~~~~~~~~~~~~~~lf~l~~ 495 (513)
||+...... ...+.+++++|+|+.
T Consensus 79 lr~~~~e~~-----~~~~~~lr~~~~l~~ 102 (102)
T d1gpja1 79 IMELPDEYR-----RAASRALRRASELNG 102 (102)
T ss_dssp HHSSCTTTT-----THHHHHHHHHHHHTC
T ss_pred HHHHHHhhh-----HHHHHHHHHHhcCCC
Confidence 998654433 467899999999873
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=2.7e-13 Score=123.50 Aligned_cols=149 Identities=19% Similarity=0.254 Sum_probs=98.3
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-ceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-EIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.++.|++|+|+|+|+.|++++..|...|++ |+|+|||.++++.+++.+... .+...++++.. ...+|+||+||+.+
T Consensus 14 ~~~~~k~vlIlGaGGaarai~~al~~~g~~-i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~--~~~~dliIN~Tp~G 90 (170)
T d1nyta1 14 FIRPGLRILLIGAGGASRGVLLPLLSLDCA-VTITNRTVSRAEELAKLFAHTGSIQALSMDELE--GHEFDLIINATSSG 90 (170)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSHHHHHHHHHHTGGGSSEEECCSGGGT--TCCCSEEEECCSCG
T ss_pred CCCCCCEEEEECCcHHHHHHHHHhcccceE-EEeccchHHHHHHHHHHHhhccccccccccccc--ccccceeecccccC
Confidence 367899999999999999999999999985 999999999999999987532 22333444332 36799999999987
Q ss_pred ccC-CChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEccCCHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 010322 321 APL-FLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLR--KAMEAQAIITEE 397 (513)
Q Consensus 321 ~~v-i~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~iDdl~~v~~~~~~~R~~--~~~~ae~iI~e~ 397 (513)
+.- ........+ ....+++|+.+ ++.....+..+ ..++. ...+.+|++.|+
T Consensus 91 ~~~~~~~~~~~~~-------~~~~~v~D~vY-----------------~P~~T~ll~~A--~~~G~~~~i~Gl~MLi~Qa 144 (170)
T d1nyta1 91 ISGDIPAIPSSLI-------HPGIYCYDMFY-----------------QKGKTPFLAWC--EQRGSKRNADGLGMLVAQA 144 (170)
T ss_dssp GGTCCCCCCGGGC-------CTTCEEEESCC-----------------CSSCCHHHHHH--HHTTCCEEECTHHHHHHHH
T ss_pred cccCCCCCcHHHh-------ccCcEEEEeec-----------------CCCCCHHHHHH--HHcCCCcccCCHHHHHHHH
Confidence 641 011111111 12356677643 33222322222 12222 235789999999
Q ss_pred HHHHHHHHHhc-CcHHHHHHHHH
Q 010322 398 SKQFAAWRDSL-ETVPTIKKLRA 419 (513)
Q Consensus 398 ~~~f~~w~~~~-~~~p~I~~lr~ 419 (513)
+.+|+.|++.. +..++++.|++
T Consensus 145 ~~~f~lwtG~~~~~~~~~~~l~~ 167 (170)
T d1nyta1 145 AHAFLLWHGVLPDVEPVIKQLQE 167 (170)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHH
Confidence 99999999864 33334444443
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=99.41 E-value=1.7e-12 Score=118.00 Aligned_cols=144 Identities=15% Similarity=0.157 Sum_probs=93.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLF 324 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi 324 (513)
.+++|+|+|+|++|++++..|...|+++|+|+||+.++++.+++.++.. .+.... ..++|+||+|||.++.--
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~--~~~~~~-----~~~~DliINaTpiGm~~~ 88 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYA--YINSLE-----NQQADILVNVTSIGMKGG 88 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCE--EESCCT-----TCCCSEEEECSSTTCTTS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhh--hhhccc-----ccchhhheeccccCCccc
Confidence 6889999999999999999999999999999999999999999988742 121111 257999999999875321
Q ss_pred ChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010322 325 LKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAW 404 (513)
Q Consensus 325 ~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~iDdl~~v~~~~~~~R~~~~~~ae~iI~e~~~~f~~w 404 (513)
..+.--...... .....+++|+. |++...+.+..+ .+.....+.+.+|++.|++.+|+.|
T Consensus 89 ~~~~~l~~~~~~--~~~~~~v~D~v-----------------Y~P~~T~ll~~A-~~~G~~~i~Gl~Mli~Qa~~~f~lw 148 (167)
T d1npya1 89 KEEMDLAFPKAF--IDNASVAFDVV-----------------AMPVETPFIRYA-QARGKQTISGAAVIVLQAVEQFELY 148 (167)
T ss_dssp TTTTSCSSCHHH--HHHCSEEEECC-----------------CSSSSCHHHHHH-HHTTCEEECHHHHHHHHHHHHHHHH
T ss_pred cccccccccHhh--cCCcceEEEEe-----------------eccCCCHHHHHH-HHCCCeEEECHHHHHHHHHHHHHHH
Confidence 110000000000 00124667764 333333332222 1111224567899999999999999
Q ss_pred HHhcCcHHHHH
Q 010322 405 RDSLETVPTIK 415 (513)
Q Consensus 405 ~~~~~~~p~I~ 415 (513)
++.......|+
T Consensus 149 tg~~~~~~~~~ 159 (167)
T d1npya1 149 THQRPSDELIA 159 (167)
T ss_dssp HSCCCCHHHHH
T ss_pred hCCCCCHHHHH
Confidence 98765444433
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=99.35 E-value=2.9e-13 Score=123.61 Aligned_cols=151 Identities=15% Similarity=0.160 Sum_probs=93.0
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
..+.+++|+|+|+|++|++++..|.. +..+|+|+||+.++++.+++.++.. ..+.+.......+..+|+||+||+.++
T Consensus 14 ~~~~~k~vlIlGaGGaarai~~aL~~-~~~~i~I~nR~~~~a~~l~~~~~~~-~~~~~~~~~~~~~~~~diiIN~tp~g~ 91 (171)
T d1p77a1 14 WLRPNQHVLILGAGGATKGVLLPLLQ-AQQNIVLANRTFSKTKELAERFQPY-GNIQAVSMDSIPLQTYDLVINATSAGL 91 (171)
T ss_dssp CCCTTCEEEEECCSHHHHTTHHHHHH-TTCEEEEEESSHHHHHHHHHHHGGG-SCEEEEEGGGCCCSCCSEEEECCCC--
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHcc-cCceeeeccchHHHHHHHHHHHhhc-cccchhhhccccccccceeeecccccc
Confidence 46789999999999999999999987 5578999999999999999988632 112222222223678999999999986
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEccCCHHHHHHHHHHHHHH-HH-HHHHHHHHHHHH
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLR-KA-MEAQAIITEESK 399 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~iDdl~~v~~~~~~~R~~-~~-~~ae~iI~e~~~ 399 (513)
+--. ....... .....+++|+.+. ++.....+..+ +.++. .+ .+.+|++.|++.
T Consensus 92 ~~~~----~~~~~~~--~~~~~~~~D~vy~----------------~p~~T~~l~~A--~~~g~~~v~~Gl~Ml~~Qa~~ 147 (171)
T d1p77a1 92 SGGT----ASVDAEI--LKLGSAFYDMQYA----------------KGTDTPFIALC--KSLGLTNVSDGFGMLVAQAAH 147 (171)
T ss_dssp ---------CCCHHH--HHHCSCEEESCCC----------------TTSCCHHHHHH--HHTTCCCEECSHHHHHHHHHH
T ss_pred cccc----cchhhhh--hcccceeeeeecc----------------CcccHHHHHHH--HHcCCCcccCcHHHHHHHHHH
Confidence 4211 1100000 0012456776541 11122222111 12222 23 478999999999
Q ss_pred HHHHHHHhc-CcHHHHHHHH
Q 010322 400 QFAAWRDSL-ETVPTIKKLR 418 (513)
Q Consensus 400 ~f~~w~~~~-~~~p~I~~lr 418 (513)
+|+.|++.. +..++...|+
T Consensus 148 ~f~iwtg~~~~~~~~~~~l~ 167 (171)
T d1p77a1 148 SFHLWRGVMPDFVSVYEQLK 167 (171)
T ss_dssp HHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHCCCCChHHHHHHHH
Confidence 999999875 3334444433
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.35 E-value=5.8e-13 Score=122.05 Aligned_cols=154 Identities=14% Similarity=0.153 Sum_probs=98.5
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc----ceeecccchHHhhcCCCcEEEEcC
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV----EIIYKPLSEMLSCAADADVVFTST 317 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~----~~~~~~~~~~~~~l~~aDVVI~AT 317 (513)
.++.|++|+|+|+|+++++++..|... .+|+|+||+.++++.+++.+... .....++.++...+..+|+||+||
T Consensus 14 ~~~~~k~vlIlGaGG~arai~~aL~~~--~~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~t 91 (177)
T d1nvta1 14 GRVKDKNIVIYGAGGAARAVAFELAKD--NNIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINAT 91 (177)
T ss_dssp CCCCSCEEEEECCSHHHHHHHHHHTSS--SEEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECS
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHccc--cceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCC
Confidence 468999999999999999999998654 47999999999999998876421 011223455556677899999999
Q ss_pred CCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010322 318 ASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEE 397 (513)
Q Consensus 318 ~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~iDdl~~v~~~~~~~R~~~~~~ae~iI~e~ 397 (513)
+.++.--..... .... . ......+++|+.+++..++-+. ...+.....+.+.+|++.|+
T Consensus 92 p~g~~~~~~~~~-~~~~-~-~~~~~~~v~D~~y~p~~T~l~~------------------~a~~~G~~~i~Gl~MLv~Qa 150 (177)
T d1nvta1 92 PIGMYPNIDVEP-IVKA-E-KLREDMVVMDLIYNPLETVLLK------------------EAKKVNAKTINGLGMLIYQG 150 (177)
T ss_dssp CTTCTTCCSSCC-SSCS-T-TCCSSSEEEECCCSSSSCHHHH------------------HHHTTTCEEECTHHHHHHHH
T ss_pred cccccccccccc-hhhh-h-ccCcccceeeecCCcHhHHHHH------------------HHHHCCCcccCCHHHHHHHH
Confidence 987642111100 0000 0 0123467778765332233211 11111112345678999999
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHH
Q 010322 398 SKQFAAWRDSLETVPTIKKLRAYA 421 (513)
Q Consensus 398 ~~~f~~w~~~~~~~p~I~~lr~~~ 421 (513)
+.+|+.|++.. |.+..||+.+
T Consensus 151 ~~qf~lwtg~~---~~~~~~r~~l 171 (177)
T d1nvta1 151 AVAFKIWTGVE---PNIEVMKNAI 171 (177)
T ss_dssp HHHHHHHHSSC---CCHHHHHHHH
T ss_pred HHHHHHHHCCC---CCHHHHHHHH
Confidence 99999999863 4456666544
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=7.9e-12 Score=114.85 Aligned_cols=146 Identities=16% Similarity=0.197 Sum_probs=92.8
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHH---HHHHHHHHhCC---cceeeccc---chHHhhcCCCcE
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEE---RVAAICEELNG---VEIIYKPL---SEMLSCAADADV 312 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~---ra~~la~~~g~---~~~~~~~~---~~~~~~l~~aDV 312 (513)
.++.+++|+|+|+|++|++++..|...|+++|+++||+++ ++..++++++. .......+ +++.+.+..+|+
T Consensus 14 ~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di 93 (182)
T d1vi2a1 14 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADI 93 (182)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccce
Confidence 4688999999999999999999999999999999999865 44455555431 11222222 344555679999
Q ss_pred EEEcCCCCccCCChhhh-hcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEccCCHHHHHHHHHHHHHHHHHHHH
Q 010322 313 VFTSTASEAPLFLKDHV-QDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQ 391 (513)
Q Consensus 313 VI~AT~s~~~vi~~~~l-~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~iDdl~~v~~~~~~~R~~~~~~ae 391 (513)
||+||+.++.-...+.+ .... ......+++|+.+ ++.....+..+ ...-...+.+.+
T Consensus 94 iIN~Tp~G~~~~~~~~~~~~~~----~~~~~~~v~Di~Y-----------------~p~~T~ll~~a-~~~g~~~i~Gl~ 151 (182)
T d1vi2a1 94 LTNGTKVGMKPLENESLVNDIS----LLHPGLLVTECVY-----------------NPHMTKLLQQA-QQAGCKTIDGYG 151 (182)
T ss_dssp EEECSSTTSTTSCSCCSCCCGG----GSCTTCEEEECCC-----------------SSSSCHHHHHH-HTTTCEEECHHH
T ss_pred eccccCCccccccchhhhhHHH----hhhcchhhHHhhc-----------------CccccHHHHHH-HHCcCeEeccHH
Confidence 99999987543221111 0000 0112357778753 22222222111 111112356789
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 010322 392 AIITEESKQFAAWRDSLE 409 (513)
Q Consensus 392 ~iI~e~~~~f~~w~~~~~ 409 (513)
|++.|++.+|+.|++...
T Consensus 152 Mli~Qa~~~f~iwtg~~~ 169 (182)
T d1vi2a1 152 MLLWQGAEQFTLWTGKDF 169 (182)
T ss_dssp HHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999999999754
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=2.4e-11 Score=109.99 Aligned_cols=147 Identities=18% Similarity=0.224 Sum_probs=99.1
Q ss_pred cccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee
Q 010322 217 ETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII 296 (513)
Q Consensus 217 et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~ 296 (513)
+.+...+|++++++|++.+. ..+|++|+|+|+|++|..+++.++..|+++|++++++++|. ++++++|.....
T Consensus 4 e~Aal~epla~a~~a~~~~~------~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl-~~a~~~Ga~~~~ 76 (171)
T d1pl8a2 4 EEGALIEPLSVGIHACRRGG------VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRL-SKAKEIGADLVL 76 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHT------CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHhC------CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHH-HHHHHhCCcccc
Confidence 33444578999999998763 34789999999999999999999999998999999999998 789999863222
Q ss_pred ecccchHH---hh-----cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccC-CCCCCccc---c--ccc
Q 010322 297 YKPLSEML---SC-----AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISV-PRNVGSCV---A--DVE 362 (513)
Q Consensus 297 ~~~~~~~~---~~-----l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlav-Prdidp~v---~--~l~ 362 (513)
....++.. +. -.++|+||+|+|++..+ ...++.+. ++|..+++...- |-++++.- . ++-
T Consensus 77 ~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~--~~a~~~~~-----~gG~iv~~G~~~~~~~~~~~~~~~k~l~i~ 149 (171)
T d1pl8a2 77 QISKESPQEIARKVEGQLGCKPEVTIECTGAEASI--QAGIYATR-----SGGTLVLVGLGSEMTTVPLLHAAIREVDIK 149 (171)
T ss_dssp ECSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHH--HHHHHHSC-----TTCEEEECSCCCSCCCCCHHHHHHTTCEEE
T ss_pred cccccccccccccccccCCCCceEEEeccCCchhH--HHHHHHhc-----CCCEEEEEecCCCCCccCHHHHHHCCcEEE
Confidence 11112221 11 14799999999997654 44555543 467788877632 12333321 1 233
Q ss_pred CeEEEccCCHHHHHHH
Q 010322 363 TARVYNVDDLKEVVAA 378 (513)
Q Consensus 363 gv~ly~iDdl~~v~~~ 378 (513)
|++.| .++++.+++.
T Consensus 150 Gs~~~-~~~~~~al~l 164 (171)
T d1pl8a2 150 GVFRY-CNTWPVAISM 164 (171)
T ss_dssp ECCSC-SSCHHHHHHH
T ss_pred EEeCC-HhHHHHHHHH
Confidence 44433 4567665544
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=99.07 E-value=2.7e-10 Score=102.61 Aligned_cols=146 Identities=19% Similarity=0.249 Sum_probs=97.3
Q ss_pred cccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee
Q 010322 217 ETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII 296 (513)
Q Consensus 217 et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~ 296 (513)
+.+...+|+++++++++.+. ..+|++|+|+|+|++|..+++.++..|+ +|++++++++|. +++++++.....
T Consensus 4 e~Aal~ePla~a~~a~~~~~------~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~-~~a~~~ga~~~~ 75 (170)
T d1e3ja2 4 EEGALLEPLSVGVHACRRAG------VQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRL-EVAKNCGADVTL 75 (170)
T ss_dssp HHHHTHHHHHHHHHHHHHHT------CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHhC------CCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHH-HHHHHcCCcEEE
Confidence 33445578999999988763 3578999999999999999999999998 699999999998 788888753211
Q ss_pred -eccc-ch---HHhh-----cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccC-CCCCCcc-c----cc
Q 010322 297 -YKPL-SE---MLSC-----AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISV-PRNVGSC-V----AD 360 (513)
Q Consensus 297 -~~~~-~~---~~~~-----l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlav-Prdidp~-v----~~ 360 (513)
..+. ++ ..+. -.++|+||+|++++..+ ...++.+. ++|..+++++.- |.++++. + ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~--~~a~~~~~-----~~G~iv~~G~~~~~~~~~~~~~~~k~i~ 148 (170)
T d1e3ja2 76 VVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCI--TIGINITR-----TGGTLMLVGMGSQMVTVPLVNACAREID 148 (170)
T ss_dssp ECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHH--HHHHHHSC-----TTCEEEECSCCSSCCCCCHHHHHTTTCE
T ss_pred eccccccccchhhhhhhcccccCCceeeecCCChHHH--HHHHHHHh-----cCCceEEEecCCCCCCcCHHHHHHCCCE
Confidence 1111 11 1111 24699999999998665 44555543 478788887642 2233331 1 12
Q ss_pred ccCeEEEccCCHHHHHHH
Q 010322 361 VETARVYNVDDLKEVVAA 378 (513)
Q Consensus 361 l~gv~ly~iDdl~~v~~~ 378 (513)
+.|++.| .+|++++++.
T Consensus 149 i~gs~~~-~~~~~~ai~l 165 (170)
T d1e3ja2 149 IKSVFRY-CNDYPIALEM 165 (170)
T ss_dssp EEECCSC-SSCHHHHHHH
T ss_pred EEEEECC-HHHHHHHHHH
Confidence 3354433 4567665543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=99.02 E-value=2.5e-10 Score=103.98 Aligned_cols=112 Identities=18% Similarity=0.199 Sum_probs=83.8
Q ss_pred CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-
Q 010322 222 AGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL- 300 (513)
Q Consensus 222 ~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~- 300 (513)
.++.+++|+|++.+. ..+|++|+|+|+|++|..+++.++..|+++|++++++++|. ++++++|.. ..+.+.
T Consensus 10 ~~~~~ta~~a~~~a~------~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~-~~a~~lGa~-~~i~~~~ 81 (174)
T d1jqba2 10 TDMMTTGFHGAELAD------IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICV-EAAKFYGAT-DILNYKN 81 (174)
T ss_dssp TTHHHHHHHHHHHTT------CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHH-HHHHHHTCS-EEECGGG
T ss_pred hhHHHHHHHHHHHhC------CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhH-HHHHhhCcc-ccccccc
Confidence 478899999988753 34799999999999999999999999998899999999887 788899853 222221
Q ss_pred chHH----hhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 301 SEML----SCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 301 ~~~~----~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
++.. +.. .++|+||+|++++..+ .+.++.+. ++|..+++++
T Consensus 82 ~~~~~~v~~~t~g~G~D~vid~~g~~~~~--~~a~~~~~-----~~G~iv~~G~ 128 (174)
T d1jqba2 82 GHIEDQVMKLTNGKGVDRVIMAGGGSETL--SQAVKMVK-----PGGIISNINY 128 (174)
T ss_dssp SCHHHHHHHHTTTSCEEEEEECSSCTTHH--HHHHHHEE-----EEEEEEECCC
T ss_pred hhHHHHHHHHhhccCcceEEEccCCHHHH--HHHHHHHh-----cCCEEEEEee
Confidence 1222 222 3699999999998654 44455442 4676777765
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=98.99 E-value=2.2e-10 Score=103.68 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=98.0
Q ss_pred CCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccch
Q 010322 223 GAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSE 302 (513)
Q Consensus 223 ~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~ 302 (513)
.+..++|+|+..+... ..+|++|+|+|+|++|..+++.++..|+..|++++++++|. +++++++... .+.+.++
T Consensus 14 ~~~~Ta~~al~~~~~~----~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~-~~~~~~ga~~-~i~~~~~ 87 (172)
T d1h2ba2 14 DAGITAYRAVKKAART----LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKL-KLAERLGADH-VVDARRD 87 (172)
T ss_dssp THHHHHHHHHHHHHTT----CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHH-HHHHHTTCSE-EEETTSC
T ss_pred hHHHHHHHHHHHhhhc----cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHH-HHHhhcccce-eecCccc
Confidence 4566788988765432 24789999999999999999999999998899999999887 6788887532 2333222
Q ss_pred -HHhh-----cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcc--c---ccccCeEEEccCC
Q 010322 303 -MLSC-----AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSC--V---ADVETARVYNVDD 371 (513)
Q Consensus 303 -~~~~-----l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~--v---~~l~gv~ly~iDd 371 (513)
.... -.++|+||+|++++..+ ...+..+. ++|+.++++++-+-.+++. + .++.|++.++.+|
T Consensus 88 ~~~~~~~~~~~~g~d~vid~~g~~~~~--~~a~~~l~-----~~G~iv~~G~~~~~~~~~~~l~~k~~~i~Gs~~~~~~d 160 (172)
T d1h2ba2 88 PVKQVMELTRGRGVNVAMDFVGSQATV--DYTPYLLG-----RMGRLIIVGYGGELRFPTIRVISSEVSFEGSLVGNYVE 160 (172)
T ss_dssp HHHHHHHHTTTCCEEEEEESSCCHHHH--HHGGGGEE-----EEEEEEECCCSSCCCCCHHHHHHTTCEEEECCSCCHHH
T ss_pred HHHHHHHhhCCCCceEEEEecCcchHH--HHHHHHHh-----CCCEEEEEeCcccccCCHHHHHhCCcEEEEEEecCHHH
Confidence 2221 24699999999997654 34454432 4677888876433333331 1 2455777777777
Q ss_pred HHHHHHH
Q 010322 372 LKEVVAA 378 (513)
Q Consensus 372 l~~v~~~ 378 (513)
++++++.
T Consensus 161 ~~~~l~l 167 (172)
T d1h2ba2 161 LHELVTL 167 (172)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766554
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=98.90 E-value=8.4e-10 Score=100.60 Aligned_cols=139 Identities=19% Similarity=0.324 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc-hH-
Q 010322 226 SVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS-EM- 303 (513)
Q Consensus 226 Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~-~~- 303 (513)
.++|+++.. .+ ...+|++|+|+|+|++|..+++.++..|+++|++++++++|. ++++++|.. ..+.+.+ +.
T Consensus 14 ~ta~~al~~----~~-~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~-~~a~~lGa~-~vi~~~~~~~~ 86 (182)
T d1vj0a2 14 ATAYHAFDE----YP-ESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRL-KLAEEIGAD-LTLNRRETSVE 86 (182)
T ss_dssp HHHHHHHHT----CS-SCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHH-HHHHHTTCS-EEEETTTSCHH
T ss_pred HHHHHHHHH----Hh-CCCCCCEEEEECCCccchhheecccccccccccccccccccc-cccccccce-EEEeccccchH
Confidence 456666532 11 224799999999999999999999999998899999999998 788899853 2232221 11
Q ss_pred ------Hhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCC-C--Cc--cc----ccccCeEE
Q 010322 304 ------LSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRN-V--GS--CV----ADVETARV 366 (513)
Q Consensus 304 ------~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrd-i--dp--~v----~~l~gv~l 366 (513)
.+.. .++|+||+|+|++..+ ...++.+. ++|..++++++.|.+ + ++ .+ ..+.|++.
T Consensus 87 ~~~~~i~~~~~~~g~Dvvid~vG~~~~~--~~a~~~l~-----~~G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~~ 159 (182)
T d1vj0a2 87 ERRKAIMDITHGRGADFILEATGDSRAL--LEGSELLR-----RGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWV 159 (182)
T ss_dssp HHHHHHHHHTTTSCEEEEEECSSCTTHH--HHHHHHEE-----EEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCC
T ss_pred HHHHHHHHhhCCCCceEEeecCCchhHH--HHHHHHhc-----CCCEEEEEeecCCCCccccccHHHHHHCCcEEEEEEe
Confidence 1111 3699999999997654 34454432 467788888764432 2 21 11 13456677
Q ss_pred EccCCHHHHHHH
Q 010322 367 YNVDDLKEVVAA 378 (513)
Q Consensus 367 y~iDdl~~v~~~ 378 (513)
|+.++++++++.
T Consensus 160 ~~~~~~~~~~~~ 171 (182)
T d1vj0a2 160 SDTSHFVKTVSI 171 (182)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 777777665543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=1.1e-09 Score=98.52 Aligned_cols=139 Identities=15% Similarity=0.209 Sum_probs=89.6
Q ss_pred CchH----HHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecc
Q 010322 224 AVSV----SSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKP 299 (513)
Q Consensus 224 ~~Sv----a~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~ 299 (513)
|+++ +|++++.+ +..+|++|+|+|+|++|.++++.++..|++ +++++++.++. ++++++|.. ..+.+
T Consensus 11 pl~Cag~Tay~al~~~------~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~-~i~~~~~~~~~-~~a~~lGad-~~i~~ 81 (168)
T d1uufa2 11 PLLCAGITTYSPLRHW------QAGPGKKVGVVGIGGLGHMGIKLAHAMGAH-VVAFTTSEAKR-EAAKALGAD-EVVNS 81 (168)
T ss_dssp GGGTHHHHHHHHHHHT------TCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSGGGH-HHHHHHTCS-EEEET
T ss_pred HHHhHHHHHHHHHHHh------CCCCCCEEEEeccchHHHHHHHHhhccccc-chhhccchhHH-HHHhccCCc-EEEEC
Confidence 5555 47776543 235799999999999999999999999996 55788888887 788899863 22332
Q ss_pred cc--hHHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCC--CCcc--c---ccccCeEEEccC
Q 010322 300 LS--EMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRN--VGSC--V---ADVETARVYNVD 370 (513)
Q Consensus 300 ~~--~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrd--idp~--v---~~l~gv~ly~iD 370 (513)
.+ .......++|+||+|++.+..+ ...+..+. ++|+.+++.+.-... +++. + ..+-|++.++..
T Consensus 82 ~~~~~~~~~~~~~D~vid~~g~~~~~--~~~~~~l~-----~~G~iv~~G~~~~~~~~~~~~~l~~k~~~i~Gs~~~~~~ 154 (168)
T d1uufa2 82 RNADEMAAHLKSFDFILNTVAAPHNL--DDFTTLLK-----RDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIP 154 (168)
T ss_dssp TCHHHHHTTTTCEEEEEECCSSCCCH--HHHHTTEE-----EEEEEEECCCC-------CHHHHHTTTCEEEECCSCCHH
T ss_pred chhhHHHHhcCCCceeeeeeecchhH--HHHHHHHh-----cCCEEEEeccCCCCcccccHHHHHHCCcEEEEEeecCHH
Confidence 22 2233356899999999998765 44554432 467777776531111 1211 1 134466666666
Q ss_pred CHHHHHHH
Q 010322 371 DLKEVVAA 378 (513)
Q Consensus 371 dl~~v~~~ 378 (513)
|++++++.
T Consensus 155 d~~e~l~l 162 (168)
T d1uufa2 155 ETQEMLDF 162 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.87 E-value=3.1e-09 Score=95.58 Aligned_cols=138 Identities=12% Similarity=0.147 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc--h-H
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS--E-M 303 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~--~-~ 303 (513)
++|+|++.+ +..+|++|+|+|+|++|..+++.++..|++ |++++++++|. ++++++|.. ..+...+ + .
T Consensus 15 Ta~~al~~~------~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~-vi~~~~~~~k~-~~a~~lGa~-~~i~~~~~~~~~ 85 (168)
T d1piwa2 15 TVYSPLVRN------GCGPGKKVGIVGLGGIGSMGTLISKAMGAE-TYVISRSSRKR-EDAMKMGAD-HYIATLEEGDWG 85 (168)
T ss_dssp HHHHHHHHT------TCSTTCEEEEECCSHHHHHHHHHHHHHTCE-EEEEESSSTTH-HHHHHHTCS-EEEEGGGTSCHH
T ss_pred HHHHHHHHh------CcCCCCEEEEECCCCcchhHHHHhhhcccc-ccccccchhHH-HHhhccCCc-EEeeccchHHHH
Confidence 356666543 235899999999999999999999999995 88999999988 778889853 2232222 2 2
Q ss_pred HhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCC-CCCC--ccc---ccccCeEEEccCCHHHHHH
Q 010322 304 LSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVP-RNVG--SCV---ADVETARVYNVDDLKEVVA 377 (513)
Q Consensus 304 ~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavP-rdid--p~v---~~l~gv~ly~iDdl~~v~~ 377 (513)
.....++|+||+|++++.+......++.+. ++|..++++++-+ .+++ +-+ ..+.|++.++..|++++++
T Consensus 86 ~~~~~~~d~vi~~~~~~~~~~~~~~~~~l~-----~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs~~g~~~~~~e~l~ 160 (168)
T d1piwa2 86 EKYFDTFDLIVVCASSLTDIDFNIMPKAMK-----VGGRIVSISIPEQHEMLSLKPYGLKAVSISYSALGSIKELNQLLK 160 (168)
T ss_dssp HHSCSCEEEEEECCSCSTTCCTTTGGGGEE-----EEEEEEECCCCCSSCCEEECGGGCBSCEEEECCCCCHHHHHHHHH
T ss_pred HhhhcccceEEEEecCCccchHHHHHHHhh-----ccceEEEeccccccccccHHHHHhCCcEEEEEeeCCHHHHHHHHH
Confidence 334568999999998876542233444432 4677777775321 1121 111 1234555556666666554
Q ss_pred H
Q 010322 378 A 378 (513)
Q Consensus 378 ~ 378 (513)
.
T Consensus 161 l 161 (168)
T d1piwa2 161 L 161 (168)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.83 E-value=1.6e-08 Score=90.77 Aligned_cols=122 Identities=20% Similarity=0.365 Sum_probs=91.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-ceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-EIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+..+|+|||+|..|+..++.++..|+. |+++|.+.++.+.+...++.. .......+.+.+.+.++|+||.|.-.|
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~-V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~ 108 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGAQ-VQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR 108 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCCE-EEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence 4578999999999999999999999985 999999999998888877642 111222235677789999999996443
Q ss_pred -cc-CCChhhhhcCCchhhhcCCcEEEEeccCCC--CCCc--------ccccccCeEEEccCCHH
Q 010322 321 -AP-LFLKDHVQDLPPVEAAVGGLRLFIDISVPR--NVGS--------CVADVETARVYNVDDLK 373 (513)
Q Consensus 321 -~~-vi~~~~l~~~~~~~~~~~g~~viiDlavPr--didp--------~v~~l~gv~ly~iDdl~ 373 (513)
.| +|++++++.+.+ | .++||+++.. +++. .+....|+..|-+.+++
T Consensus 109 ~aP~lIt~~mv~~Mk~------G-SVIVDvaidqGG~~Ets~ptt~~~p~~~~~gV~~y~v~N~P 166 (168)
T d1pjca1 109 RAPILVPASLVEQMRT------G-SVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMP 166 (168)
T ss_dssp SCCCCBCHHHHTTSCT------T-CEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGG
T ss_pred ccCeeecHHHHhhcCC------C-cEEEEeecCCCCccccCCCCcccCCeEEECCEEEEecCCCC
Confidence 34 789999988742 2 7999998753 3331 23345789999887764
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.83 E-value=2.7e-09 Score=98.79 Aligned_cols=92 Identities=15% Similarity=0.122 Sum_probs=72.3
Q ss_pred cCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc
Q 010322 221 AAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL 300 (513)
Q Consensus 221 ~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~ 300 (513)
..+++|+||++++.+. -.+|++|+|+|+|++|..++..++..|+.+|++++++++|+ ++++++|.. ..+.+.
T Consensus 7 l~d~~~ta~~a~~~a~------v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl-~~a~~~Ga~-~~~~~~ 78 (195)
T d1kola2 7 LSDILPTGYHGAVTAG------VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL-AHAKAQGFE-IADLSL 78 (195)
T ss_dssp GGTHHHHHHHHHHHTT------CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHTTCE-EEETTS
T ss_pred cccHHHHHHHHHHHhC------CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhh-Hhhhhcccc-EEEeCC
Confidence 3578999999988763 34799999999999999999999999999999999999988 889999853 233322
Q ss_pred -chHH----hhc--CCCcEEEEcCCCC
Q 010322 301 -SEML----SCA--ADADVVFTSTASE 320 (513)
Q Consensus 301 -~~~~----~~l--~~aDVVI~AT~s~ 320 (513)
+++. +.. .++|++|+|++.+
T Consensus 79 ~~~~~~~i~~~t~g~g~D~vid~vG~~ 105 (195)
T d1kola2 79 DTPLHEQIAALLGEPEVDCAVDAVGFE 105 (195)
T ss_dssp SSCHHHHHHHHHSSSCEEEEEECCCTT
T ss_pred CcCHHHHHHHHhCCCCcEEEEECcccc
Confidence 2222 221 3799999999854
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=98.77 E-value=1.2e-08 Score=92.51 Aligned_cols=112 Identities=14% Similarity=0.216 Sum_probs=79.2
Q ss_pred chHHHHHH-HHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc-h
Q 010322 225 VSVSSAAV-ELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS-E 302 (513)
Q Consensus 225 ~Sva~~Av-~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~-~ 302 (513)
..++|+|+ +.+ ...+|++|+|+|+|++|..+++.++..|+.+|++++++++|. ++++++|.. ..+++.+ +
T Consensus 12 ~~Ta~~a~~~~a------~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl-~~a~~lGa~-~~i~~~~~d 83 (174)
T d1p0fa2 12 FATGYGAAVNTA------KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKF-PKAIELGAT-ECLNPKDYD 83 (174)
T ss_dssp HHHHHHHHHTTT------CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHHTTCS-EEECGGGCS
T ss_pred HHHHHHHHHHhh------CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHH-HHHHHcCCc-EEEcCCCch
Confidence 44566664 222 345899999999999999999999999999999999999998 889999864 2232211 1
Q ss_pred --HHhh-----cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccC
Q 010322 303 --MLSC-----AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISV 350 (513)
Q Consensus 303 --~~~~-----l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlav 350 (513)
..+. -.++|+||+|++++..+ ...+..+.+ .+|..++++++-
T Consensus 84 ~~~~~~~~~~~~~G~d~vid~~g~~~~~--~~~~~~~~~----~~G~~v~vG~~~ 132 (174)
T d1p0fa2 84 KPIYEVICEKTNGGVDYAVECAGRIETM--MNALQSTYC----GSGVTVVLGLAS 132 (174)
T ss_dssp SCHHHHHHHHTTSCBSEEEECSCCHHHH--HHHHHTBCT----TTCEEEECCCCC
T ss_pred hHHHHHHHHhcCCCCcEEEEcCCCchHH--HHHHHHHHH----hcCceEEEEEec
Confidence 1221 14799999999998664 334433321 247788888753
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=98.75 E-value=3.3e-08 Score=90.65 Aligned_cols=105 Identities=20% Similarity=0.239 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC---cc---eeecc
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG---VE---IIYKP 299 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~---~~---~~~~~ 299 (513)
+++..|..+....+ .++.||+|+|.|+ |++|+.+++.|...|+ +|++++|+.++.+++++.+.. .. ..+..
T Consensus 5 ~~~~~v~~~~~~~~-~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (191)
T d1luaa1 5 TAAAGVALVVKAAG-GSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD 82 (191)
T ss_dssp HHHHHHHHHHHHTT-SCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS
T ss_pred cHHHHHHHHHHHcC-CCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhccchhhhhhhccc
Confidence 34445555555554 6899999999996 9999999999999998 599999999999888877642 11 12223
Q ss_pred cchHHhhcCCCcEEEEcCCCCccCCChhhhhcCC
Q 010322 300 LSEMLSCAADADVVFTSTASEAPLFLKDHVQDLP 333 (513)
Q Consensus 300 ~~~~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~ 333 (513)
.+++.+.+.++|+||++++.+...++.+.++...
T Consensus 83 ~~~~~~~~~~iDilin~Ag~g~~~~~~e~~~~~~ 116 (191)
T d1luaa1 83 DASRAEAVKGAHFVFTAGAIGLELLPQAAWQNES 116 (191)
T ss_dssp HHHHHHHTTTCSEEEECCCTTCCCBCHHHHHTCT
T ss_pred HHHHHHHhcCcCeeeecCccccccCCHHHHHhhh
Confidence 3566777899999999999877777777776543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.73 E-value=5.9e-09 Score=93.59 Aligned_cols=136 Identities=19% Similarity=0.203 Sum_probs=89.3
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecc-cchH--
Q 010322 228 SSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKP-LSEM-- 303 (513)
Q Consensus 228 a~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~-~~~~-- 303 (513)
+|++++.+ ...+|++|+|+|+ |++|.++++.++..|+.+|++++++++|. ++++++|... .+.. .++.
T Consensus 16 a~~al~~~------~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~-~~~~~~Ga~~-~i~~~~~~~~~ 87 (170)
T d1jvba2 16 TYRAVRKA------SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAV-EAAKRAGADY-VINASMQDPLA 87 (170)
T ss_dssp HHHHHHHT------TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHH-HHHHHHTCSE-EEETTTSCHHH
T ss_pred HHHHHHHh------CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhH-HHHHHcCCce-eeccCCcCHHH
Confidence 66776543 2357899999995 99999999999999988899999999887 7788888532 2221 1122
Q ss_pred --Hhhc--CCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccC-CCCCCccc-----ccccCeEEEccCCHH
Q 010322 304 --LSCA--ADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISV-PRNVGSCV-----ADVETARVYNVDDLK 373 (513)
Q Consensus 304 --~~~l--~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlav-Prdidp~v-----~~l~gv~ly~iDdl~ 373 (513)
.+.. .++|+||+|++++..+ ...++.+. ++|+.+++++.- |-.+++.. ..+.|+..++..|+.
T Consensus 88 ~~~~~~~~~~~d~vid~~g~~~~~--~~a~~~l~-----~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~Gs~~~~~~d~~ 160 (170)
T d1jvba2 88 EIRRITESKGVDAVIDLNNSEKTL--SVYPKALA-----KQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFL 160 (170)
T ss_dssp HHHHHTTTSCEEEEEESCCCHHHH--TTGGGGEE-----EEEEEEECCSSCCCCCCCHHHHHHHTCEEEECCSCCHHHHH
T ss_pred HHHHHhhcccchhhhcccccchHH--Hhhhhhcc-----cCCEEEEeccccCccccCHHHHHhCCcEEEEEecCCHHHHH
Confidence 2211 3699999999987654 33444432 467777777532 11233221 244566666766666
Q ss_pred HHHHH
Q 010322 374 EVVAA 378 (513)
Q Consensus 374 ~v~~~ 378 (513)
++++.
T Consensus 161 ~~l~l 165 (170)
T d1jvba2 161 GIMRL 165 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=98.72 E-value=1.9e-08 Score=91.16 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=79.5
Q ss_pred chHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc--ch
Q 010322 225 VSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL--SE 302 (513)
Q Consensus 225 ~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~--~~ 302 (513)
+..+|+|+.. .. ...+|++|+|+|+|++|...++.++..|+++|++++++++|. ++++++|... .+.+. ++
T Consensus 13 ~~T~~~a~~~---~a--~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~-~~a~~~Ga~~-~i~~~~~~~ 85 (174)
T d1e3ia2 13 FSSGYGAAIN---TA--KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKF-PKAKALGATD-CLNPRELDK 85 (174)
T ss_dssp HHHHHHHHHT---TS--CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHTTCSE-EECGGGCSS
T ss_pred HHHHHHHHHH---hh--CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHH-HHHHHhCCCc-ccCCccchh
Confidence 4456666521 11 245799999999999999999999999999999999999997 8999998642 22221 11
Q ss_pred -HHhh-----cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 303 -MLSC-----AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 303 -~~~~-----l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
.... -.++|+||+|||++..+ .+.++.+.+ .+|..+++.+.
T Consensus 86 ~~~~~~~~~~~~G~d~vie~~G~~~~~--~~a~~~~~~----g~G~~v~vG~~ 132 (174)
T d1e3ia2 86 PVQDVITELTAGGVDYSLDCAGTAQTL--KAAVDCTVL----GWGSCTVVGAK 132 (174)
T ss_dssp CHHHHHHHHHTSCBSEEEESSCCHHHH--HHHHHTBCT----TTCEEEECCCS
T ss_pred hhhhhHhhhhcCCCcEEEEecccchHH--HHHHHHhhc----CCeEEEecCCC
Confidence 1111 25899999999998765 455555432 13777787753
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.72 E-value=4.1e-08 Score=97.47 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=85.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPL 323 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~-~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~v 323 (513)
..++++|||+|.+|+..+..+.. +..++|.|++|++++++.++..+......+ ..+..+++.++||||+||++..|+
T Consensus 124 ~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~--~~~~~~a~~~aDiV~taT~s~~P~ 201 (320)
T d1omoa_ 124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISA--SVQPAEEASRCDVLVTTTPSRKPV 201 (320)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCE--EECCHHHHTSSSEEEECCCCSSCC
T ss_pred CccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCcc--ccchhhhhccccEEEEeccCcccc
Confidence 46789999999999999998886 678899999999999999988775321111 123345578999999999999999
Q ss_pred CChhhhhcCCchhhhcCCcEEEEeccCC--CCCCcccccccCeEEEccCCHHHH
Q 010322 324 FLKDHVQDLPPVEAAVGGLRLFIDISVP--RNVGSCVADVETARVYNVDDLKEV 375 (513)
Q Consensus 324 i~~~~l~~~~~~~~~~~g~~viiDlavP--rdidp~v~~l~gv~ly~iDdl~~v 375 (513)
|..++++. |-....|+..-| +++++++. ....+| +||+...
T Consensus 202 ~~~~~l~~--------G~hv~~iGs~~p~~~Eld~~~~--~~a~~~-vdd~~~~ 244 (320)
T d1omoa_ 202 VKAEWVEE--------GTHINAIGADGPGKQELDVEIL--KKAKIV-VDDLEQA 244 (320)
T ss_dssp BCGGGCCT--------TCEEEECSCCSTTCCCBCHHHH--HTEEEE-ESCHHHH
T ss_pred cchhhcCC--------CCeEeecCCccccccccCHHHh--hcCceE-ecCHHHh
Confidence 98887643 333444443334 56777653 345666 6887664
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.68 E-value=9.4e-09 Score=91.88 Aligned_cols=133 Identities=13% Similarity=0.203 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-chH--
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL-SEM-- 303 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~-~~~-- 303 (513)
++|+|++.+. ..+|++|+|+|+|++|.++++.++..|+ +|++++++++|. ++++++|... .+.+. ++.
T Consensus 15 Ta~~al~~~~------~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~-~~a~~~Ga~~-~i~~~~~~~~~ 85 (166)
T d1llua2 15 TVYKGLKQTN------ARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKL-ELARKLGASL-TVNARQEDPVE 85 (166)
T ss_dssp HHHHHHHHHT------CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHTTCSE-EEETTTSCHHH
T ss_pred HHHHHHHHhC------CCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHH-HhhhccCccc-cccccchhHHH
Confidence 4678876652 3579999999999999999999999997 699999999988 7788888632 22222 222
Q ss_pred --HhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCC---CCcc-c----ccccCeEEEccCCHH
Q 010322 304 --LSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRN---VGSC-V----ADVETARVYNVDDLK 373 (513)
Q Consensus 304 --~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrd---idp~-v----~~l~gv~ly~iDdl~ 373 (513)
.....+.|.+|.+++++..+ ...++.+. ++|..+++++ |.+ ++.. + ..+.|++.|+.+|++
T Consensus 86 ~~~~~~~g~~~~i~~~~~~~~~--~~~~~~l~-----~~G~iv~~G~--~~~~~~~~~~~~~~k~~~i~Gs~~~~~~d~~ 156 (166)
T d1llua2 86 AIQRDIGGAHGVLVTAVSNSAF--GQAIGMAR-----RGGTIALVGL--PPGDFPTPIFDVVLKGLHIAGSIVGTRADLQ 156 (166)
T ss_dssp HHHHHHSSEEEEEECCSCHHHH--HHHHTTEE-----EEEEEEECCC--CSSEEEEEHHHHHHTTCEEEECCSCCHHHHH
T ss_pred HHHHhhcCCcccccccccchHH--HHHHHHhc-----CCcEEEEEEe--cCCCccCCHHHHHhCCcEEEEEeecCHHHHH
Confidence 22335778888999887664 44554432 4676777664 321 1110 0 133455566666666
Q ss_pred HHHH
Q 010322 374 EVVA 377 (513)
Q Consensus 374 ~v~~ 377 (513)
++++
T Consensus 157 e~l~ 160 (166)
T d1llua2 157 EALD 160 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.67 E-value=1.9e-08 Score=90.83 Aligned_cols=98 Identities=17% Similarity=0.278 Sum_probs=72.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-chHHhhc-----CCCcEEEEc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL-SEMLSCA-----ADADVVFTS 316 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~-~~~~~~l-----~~aDVVI~A 316 (513)
..+|.+|+|+|+|++|.++++.++..|++.|++++++++|. ++++++|... .+.+. ++..+.+ .++|+||+|
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~-~~a~~~Ga~~-~i~~~~~~~~~~i~~~t~gg~D~vid~ 103 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRL-ELAKQLGATH-VINSKTQDPVAAIKEITDGGVNFALES 103 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHH-HHHHHHTCSE-EEETTTSCHHHHHHHHTTSCEEEEEEC
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHH-HHHHHcCCeE-EEeCCCcCHHHHHHHHcCCCCcEEEEc
Confidence 45799999999999999999999999999899999999888 7788998632 22221 2333222 368999999
Q ss_pred CCCCccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 317 TASEAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 317 T~s~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
++++..+ ...++.+. ++|+.++++++
T Consensus 104 ~G~~~~~--~~~~~~~~-----~~G~i~~~G~~ 129 (174)
T d1f8fa2 104 TGSPEIL--KQGVDALG-----ILGKIAVVGAP 129 (174)
T ss_dssp SCCHHHH--HHHHHTEE-----EEEEEEECCCC
T ss_pred CCcHHHH--HHHHhccc-----CceEEEEEeec
Confidence 9997654 34444432 46778887763
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=98.63 E-value=9.7e-08 Score=95.31 Aligned_cols=121 Identities=18% Similarity=0.242 Sum_probs=89.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhCCc-ceeecccchHHhhcCCCcEEEEcCCCC-
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRSEERVAAICEELNGV-EIIYKPLSEMLSCAADADVVFTSTASE- 320 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~-~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~~~~~~~~~l~~aDVVI~AT~s~- 320 (513)
...++++|||+|.++...+..+.. .++++|.|++|++++++++++++... .+.+...+++.+++.++|||++||+++
T Consensus 126 ~da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas~s 205 (340)
T d1x7da_ 126 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA 205 (340)
T ss_dssp TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS
T ss_pred cCCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccccCC
Confidence 356899999999999999997765 68999999999999999999887532 345666788899999999999999765
Q ss_pred -ccCCChhhhhcCCchhhhcCCcEEEEeccCC--CCCCcccccccCeEEEccCCHHHH
Q 010322 321 -APLFLKDHVQDLPPVEAAVGGLRLFIDISVP--RNVGSCVADVETARVYNVDDLKEV 375 (513)
Q Consensus 321 -~~vi~~~~l~~~~~~~~~~~g~~viiDlavP--rdidp~v~~l~gv~ly~iDdl~~v 375 (513)
.|+|+.+++++ |-....|+.-.| +.+++.+. ....+| +|+..+.
T Consensus 206 ~~Pv~~~~~l~p--------G~hI~aiGs~~p~~~Eld~~~l--~~a~v~-VD~~~q~ 252 (340)
T d1x7da_ 206 YATIITPDMLEP--------GMHLNAVGGDCPGKTELHADVL--RNARVF-VEYEPQT 252 (340)
T ss_dssp EEEEECGGGCCT--------TCEEEECSCCBTTBEEECHHHH--HTSEEE-ESSHHHH
T ss_pred CCcccchhhcCC--------CCEEeecccchhhhhccCHHHH--hcCcEE-EecHHHH
Confidence 68998887753 222333332234 45666653 345565 6887764
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=98.59 E-value=1.5e-07 Score=85.24 Aligned_cols=113 Identities=12% Similarity=0.179 Sum_probs=79.1
Q ss_pred CchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc--
Q 010322 224 AVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS-- 301 (513)
Q Consensus 224 ~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~-- 301 (513)
...++|+|+.. .. .-.+|++|+|+|+|++|..+++.++..|+.+|++++++++|. ++|+++|+. ..+.+.+
T Consensus 13 a~~T~~~Av~~---~~--~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl-~~Ak~~GA~-~~in~~~~~ 85 (176)
T d1d1ta2 13 GFSTGYGAAVK---TG--KVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKF-EKAMAVGAT-ECISPKDST 85 (176)
T ss_dssp HHHHHHHHHHT---TS--CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHHTCS-EEECGGGCS
T ss_pred HHHHHHHHHHH---hh--CCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHH-HHHHhcCCc-EEECccccc
Confidence 34456666422 11 234799999999999999999999999999999999999998 799999874 2333222
Q ss_pred h-HH---h--hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 302 E-ML---S--CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 302 ~-~~---~--~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
+ .. + .-.++|+||++++.+... ...+..+.+ .+|..+++.+.
T Consensus 86 ~~~~~~~~~~~g~G~d~vi~~~g~~~~~--~~a~~~~~~----~~G~~v~vG~~ 133 (176)
T d1d1ta2 86 KPISEVLSEMTGNNVGYTFEVIGHLETM--IDALASCHM----NYGTSVVVGVP 133 (176)
T ss_dssp SCHHHHHHHHHTSCCCEEEECSCCHHHH--HHHHTTSCT----TTCEEEECSCC
T ss_pred hHHHHHHHHhccccceEEEEeCCchHHH--HHHHHHhhc----CCeEEEEEEcc
Confidence 1 11 1 125899999999997654 333433321 34677777764
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=98.52 E-value=2.7e-07 Score=83.70 Aligned_cols=122 Identities=19% Similarity=0.260 Sum_probs=85.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec--c---------------------
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK--P--------------------- 299 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~--~--------------------- 299 (513)
..+..+|+|||+|..|...++.+...|+ .|+++|.++++.+.+...++. .+.+. .
T Consensus 26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~-~i~~~~~~~~~~~~~~gyA~~~s~~~~~~ 103 (183)
T d1l7da1 26 TVPPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGK-FITVDDEAMKTAETAGGYAKEMGEEFRKK 103 (183)
T ss_dssp EECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCE-ECCC-----------------------CC
T ss_pred CcCCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcc-eEEEeccccccccccccchhhcCHHHHHH
Confidence 3466799999999999999999999999 599999999988776654331 11100 0
Q ss_pred -cchHHhhcCCCcEEEEcCCCC---cc-CCChhhhhcCCchhhhcCCcEEEEeccCCC--CCCc----ccccccCeEEEc
Q 010322 300 -LSEMLSCAADADVVFTSTASE---AP-LFLKDHVQDLPPVEAAVGGLRLFIDISVPR--NVGS----CVADVETARVYN 368 (513)
Q Consensus 300 -~~~~~~~l~~aDVVI~AT~s~---~~-vi~~~~l~~~~~~~~~~~g~~viiDlavPr--didp----~v~~l~gv~ly~ 368 (513)
.+.+.+.+..+|+||.+.-.| .| ++++++++.+.+ | .++||+++.. +++. .+....|+..|.
T Consensus 104 ~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~------G-SVIVDvaidqGGn~Ets~~~~~~~~~gV~~~g 176 (183)
T d1l7da1 104 QAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKP------G-SVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVG 176 (183)
T ss_dssp HHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCT------T-CEEEETTGGGTCSSTTCCTTCEEEETTEEEEC
T ss_pred HHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCC------C-cEEEEEeecCCCccccCcCCCEEEECCEEEEe
Confidence 012344578999999996443 44 689999988742 2 7999998753 3321 234557888887
Q ss_pred cCCHH
Q 010322 369 VDDLK 373 (513)
Q Consensus 369 iDdl~ 373 (513)
+.+++
T Consensus 177 v~NiP 181 (183)
T d1l7da1 177 HTNVP 181 (183)
T ss_dssp CSSGG
T ss_pred eCCCC
Confidence 76654
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.47 E-value=1.2e-07 Score=84.20 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=60.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecc---cchHHhhcCCCcEEEEcCCCCc
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKP---LSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~---~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
++|+|+|||||.||+.+|++|...|. +|+|+|||.++++++++.++........ .....+.+...|+++.+++...
T Consensus 1 ~~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~ 79 (182)
T d1e5qa1 1 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTF 79 (182)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchh
Confidence 36899999999999999999999998 5999999999999999987642211111 1234455788999999987654
Q ss_pred c
Q 010322 322 P 322 (513)
Q Consensus 322 ~ 322 (513)
.
T Consensus 80 ~ 80 (182)
T d1e5qa1 80 H 80 (182)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=3e-06 Score=75.39 Aligned_cols=97 Identities=15% Similarity=0.244 Sum_probs=73.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.+.||+|+|+|.|.+|+.+|+.|+..|++ |++++++|-++ +...+.+ ..+. .+.+++..+|+||+||+..+
T Consensus 21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~-V~v~e~dp~~a--l~A~~dG--~~v~---~~~~a~~~adivvtaTGn~~- 91 (163)
T d1li4a1 21 MIAGKVAVVAGYGDVGKGCAQALRGFGAR-VIITEIDPINA--LQAAMEG--YEVT---TMDEACQEGNIFVTTTGCID- 91 (163)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHH--HHHHHTT--CEEC---CHHHHTTTCSEEEECSSCSC-
T ss_pred eecCCEEEEeccccccHHHHHHHHhCCCe-eEeeecccchh--HHhhcCc--eEee---ehhhhhhhccEEEecCCCcc-
Confidence 47899999999999999999999999995 99999999775 3333433 2333 35566789999999999865
Q ss_pred CCChhhhhcCCchhhhcCCcEEEEecc-CCCCCC
Q 010322 323 LFLKDHVQDLPPVEAAVGGLRLFIDIS-VPRNVG 355 (513)
Q Consensus 323 vi~~~~l~~~~~~~~~~~g~~viiDla-vPrdid 355 (513)
+|+.++++.+. ...++..++ ....|+
T Consensus 92 vI~~eh~~~MK-------dgaIL~N~Ghfd~EId 118 (163)
T d1li4a1 92 IILGRHFEQMK-------DDAIVCNIGHFDVEID 118 (163)
T ss_dssp SBCHHHHTTCC-------TTEEEEECSSSTTSBC
T ss_pred chhHHHHHhcc-------CCeEEEEeccccceec
Confidence 57889998763 236666664 333344
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=98.36 E-value=1.7e-06 Score=77.27 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=74.9
Q ss_pred chHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc---c
Q 010322 225 VSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL---S 301 (513)
Q Consensus 225 ~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~---~ 301 (513)
..++|+|+.. .. ...+|++|+|+|+|++|...++.++..|+..|++++++++|. ++++++|... .+... +
T Consensus 13 ~~Tay~al~~---~~--~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~-~~ak~lGa~~-~i~~~~~~~ 85 (176)
T d2fzwa2 13 ISTGYGAAVN---TA--KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKF-ARAKEFGATE-CINPQDFSK 85 (176)
T ss_dssp HHHHHHHHHT---TT--CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHHHTCSE-EECGGGCSS
T ss_pred HHHHHHHHHH---hh--CCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHH-HHHHHhCCcE-EEeCCchhh
Confidence 3456666421 11 235899999999999999999999999999999999998887 7899998642 22221 1
Q ss_pred hHHhh-----cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 302 EMLSC-----AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 302 ~~~~~-----l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+..+. -.++|+||++++.+..+ ...+.... +++..+++..
T Consensus 86 ~~~~~~~~~~~~g~D~vid~~G~~~~~--~~~~~~~~-----~g~~~~~v~~ 130 (176)
T d2fzwa2 86 PIQEVLIEMTDGGVDYSFECIGNVKVM--RAALEACH-----KGWGVSVVVG 130 (176)
T ss_dssp CHHHHHHHHTTSCBSEEEECSCCHHHH--HHHHHTBC-----TTTCEEEECS
T ss_pred HHHHHHHHHcCCCCcEeeecCCCHHHH--HHHHHhhc-----CCceeEEEEe
Confidence 22222 24799999999987553 33333322 3455655543
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=98.32 E-value=2e-06 Score=76.29 Aligned_cols=91 Identities=13% Similarity=0.189 Sum_probs=71.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
-+.||+++|+|.|..|+.+|+.|+..|+ +|+|+..+|-++ |...+.+ +.+. .+.++++.+|++|+|||..+
T Consensus 20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~a--lqA~mdG--f~v~---~~~~a~~~aDi~vTaTGn~~- 90 (163)
T d1v8ba1 20 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICA--IQAVMEG--FNVV---TLDEIVDKGDFFITCTGNVD- 90 (163)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHH--HHHHTTT--CEEC---CHHHHTTTCSEEEECCSSSS-
T ss_pred eecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchhh--HHHHhcC--CccC---chhHccccCcEEEEcCCCCc-
Confidence 4689999999999999999999999999 599999999775 3333333 3443 45677889999999999976
Q ss_pred CCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 323 LFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 323 vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
+|+.++++.+. .+ .++..++
T Consensus 91 vI~~~h~~~MK------dg-aIl~N~G 110 (163)
T d1v8ba1 91 VIKLEHLLKMK------NN-AVVGNIG 110 (163)
T ss_dssp SBCHHHHTTCC------TT-CEEEECS
T ss_pred cccHHHHHHhh------CC-eEEEecc
Confidence 56888888763 23 5666655
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.30 E-value=1.8e-07 Score=83.01 Aligned_cols=106 Identities=16% Similarity=0.360 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc-h---
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS-E--- 302 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~-~--- 302 (513)
++|+++..+. ..+|++|+|+|+|++|..+++.++..|+ +|++++++++|. ++++++|.. ..+.+.+ +
T Consensus 15 Ta~~al~~~~------~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~-~~~k~~Ga~-~~~~~~~~~~~~ 85 (168)
T d1rjwa2 15 TTYKALKVTG------AKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKL-ELAKELGAD-LVVNPLKEDAAK 85 (168)
T ss_dssp HHHHHHHHHT------CCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHH-HHHHHTTCS-EEECTTTSCHHH
T ss_pred HHHHHHHHhC------CCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHh-hhhhhcCcc-eecccccchhhh
Confidence 3778877652 3479999999999999999999999999 599999999998 678888853 2222222 2
Q ss_pred -HHhhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 303 -MLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 303 -~~~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+.....+.|.+|.+++++..+ ...++.+. ++|..+++++
T Consensus 86 ~~~~~~~~~~~~v~~~~~~~~~--~~a~~~l~-----~~G~i~~~g~ 125 (168)
T d1rjwa2 86 FMKEKVGGVHAAVVTAVSKPAF--QSAYNSIR-----RGGACVLVGL 125 (168)
T ss_dssp HHHHHHSSEEEEEESSCCHHHH--HHHHHHEE-----EEEEEEECCC
T ss_pred hcccccCCCceEEeecCCHHHH--HHHHHHhc-----cCCceEeccc
Confidence 223345778888888876554 34454442 4666666664
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.30 E-value=3.5e-07 Score=81.25 Aligned_cols=70 Identities=27% Similarity=0.394 Sum_probs=56.8
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPL 323 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~v 323 (513)
.+|.|||.|.||..+|++|...|.+ |+++||++++++.+.+. +. . ..++..+.+..+|+||.|.+.+..+
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~-V~~~d~~~~~~~~~~~~-~~---~--~~~~~~e~~~~~d~ii~~v~~~~~v 70 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYS-LVVSDRNPEAIADVIAA-GA---E--TASTAKAIAEQCDVIITMLPNSPHV 70 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHT-TC---E--ECSSHHHHHHHCSEEEECCSSHHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCe-EEEEeCCcchhHHHHHh-hh---h--hcccHHHHHhCCCeEEEEcCCHHHH
Confidence 3799999999999999999999985 99999999999877754 32 1 2345566677899999999887543
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=98.29 E-value=6.7e-07 Score=78.60 Aligned_cols=66 Identities=21% Similarity=0.324 Sum_probs=54.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
.+|++||+|.||.++++.|...|..+|+++||++++++.++++++. .+. ++. +.+..+|+||.|+.
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~---~~~--~~~-~~v~~~Div~lavk 66 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGV---ETS--ATL-PELHSDDVLILAVK 66 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCC---EEE--SSC-CCCCTTSEEEECSC
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccc---ccc--ccc-ccccccceEEEecC
Confidence 4799999999999999999988877899999999999999988763 221 222 23578999999987
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=98.25 E-value=2.4e-06 Score=76.51 Aligned_cols=92 Identities=17% Similarity=0.244 Sum_probs=67.3
Q ss_pred chHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc--h
Q 010322 225 VSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS--E 302 (513)
Q Consensus 225 ~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~--~ 302 (513)
.+++|+|+-. .. ...+|++|+|+|+|++|..++..++..|+.+|++++++++|. +++.++|... .+...+ +
T Consensus 13 ~~Tay~al~~---~~--~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~-~~a~~~Ga~~-~i~~~~~~~ 85 (176)
T d2jhfa2 13 FSTGYGSAVK---VA--KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF-AKAKEVGATE-CVNPQDYKK 85 (176)
T ss_dssp HHHHHHHHHT---TT--CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHTTCSE-EECGGGCSS
T ss_pred HHHHHHHHHH---hh--CCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHH-HHHHHhCCee-EEecCCchh
Confidence 3456676521 11 235799999999999999999999999999999999999997 7888888632 232221 1
Q ss_pred -HHhh-----cCCCcEEEEcCCCCccC
Q 010322 303 -MLSC-----AADADVVFTSTASEAPL 323 (513)
Q Consensus 303 -~~~~-----l~~aDVVI~AT~s~~~v 323 (513)
..+. -.++|+||++++.+..+
T Consensus 86 ~~~~~~~~~~~~G~D~vid~~G~~~~~ 112 (176)
T d2jhfa2 86 PIQEVLTEMSNGGVDFSFEVIGRLDTM 112 (176)
T ss_dssp CHHHHHHHHTTSCBSEEEECSCCHHHH
T ss_pred HHHHHHHHHhcCCCCEEEecCCchhHH
Confidence 1111 24899999999997654
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.24 E-value=7.8e-07 Score=78.37 Aligned_cols=66 Identities=24% Similarity=0.295 Sum_probs=55.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
.+|.|||+|.||.++++.|...|. +|++++|++++.++++++++.. ...+..+.+..+|+||.|+.
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~~~~~~~l~~~~g~~-----~~~~~~~~~~~~dvIilavk 66 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLALP-----YAMSHQDLIDQVDLVILGIK 66 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTCC-----BCSSHHHHHHTCSEEEECSC
T ss_pred CEEEEEeccHHHHHHHHHHHhCCC-eEEEEcChHHhHHhhcccccee-----eechhhhhhhccceeeeecc
Confidence 479999999999999999998876 6999999999999999888742 22455566779999999985
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=98.24 E-value=8.8e-07 Score=79.44 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=72.9
Q ss_pred CchHHHHHHHHHHhhCCCCCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccch
Q 010322 224 AVSVSSAAVELALMKLPESSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSE 302 (513)
Q Consensus 224 ~~Sva~~Av~la~~~~~~~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~ 302 (513)
+..++|++++.+ +-.+|++|+|.|+ |++|.++++.++..|++ |+++.+++++. ++++++|.. .+..+.+
T Consensus 12 ~~~TA~~al~~~------~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~-vi~~~~~~~~~-~~~~~lGa~--~~i~~~~ 81 (171)
T d1iz0a2 12 SFLTAYLALKRA------QARPGEKVLVQAAAGALGTAAVQVARAMGLR-VLAAASRPEKL-ALPLALGAE--EAATYAE 81 (171)
T ss_dssp HHHHHHHHHHHT------TCCTTCEEEESSTTBHHHHHHHHHHHHTTCE-EEEEESSGGGS-HHHHHTTCS--EEEEGGG
T ss_pred HHHHHHHHHHHh------CCCCCCEEEEEeccccchhhhhhhhcccccc-ccccccccccc-ccccccccc--eeeehhh
Confidence 345577777653 2348999999996 99999999999999995 88888888887 677788853 2223333
Q ss_pred HH---hhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 303 ML---SCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 303 ~~---~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.. ....++|+||+|+|. .+ ...++.+. ++|+.+.++.
T Consensus 82 ~~~~~~~~~g~D~v~d~~G~--~~--~~~~~~l~-----~~G~~v~~G~ 121 (171)
T d1iz0a2 82 VPERAKAWGGLDLVLEVRGK--EV--EESLGLLA-----HGGRLVYIGA 121 (171)
T ss_dssp HHHHHHHTTSEEEEEECSCT--TH--HHHHTTEE-----EEEEEEEC--
T ss_pred hhhhhhccccccccccccch--hH--HHHHHHHh-----cCCcEEEEeC
Confidence 22 234689999999873 22 34555432 4677777765
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=98.23 E-value=1.9e-06 Score=76.95 Aligned_cols=91 Identities=14% Similarity=0.233 Sum_probs=67.6
Q ss_pred chHHHHHH-HHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc--
Q 010322 225 VSVSSAAV-ELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS-- 301 (513)
Q Consensus 225 ~Sva~~Av-~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~-- 301 (513)
..++|+|+ +.+ ...+|++|+|+|+|++|..++..++..|..+|++++++++|. +++.++|.. ..+++.+
T Consensus 13 ~~Tay~a~~~~a------~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl-~~a~~~GAd-~~in~~~~~ 84 (175)
T d1cdoa2 13 VSTGFGAAVNTA------KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKF-EKAKVFGAT-DFVNPNDHS 84 (175)
T ss_dssp HHHHHHHHHTTT------CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHTTCC-EEECGGGCS
T ss_pred HHHHHHHHHHhh------CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHH-HHHHHcCCc-EEEcCCCcc
Confidence 45566765 222 235799999999999999999999999999999999999998 789999863 2333221
Q ss_pred h-HHhh-----cCCCcEEEEcCCCCccC
Q 010322 302 E-MLSC-----AADADVVFTSTASEAPL 323 (513)
Q Consensus 302 ~-~~~~-----l~~aDVVI~AT~s~~~v 323 (513)
+ ..+. -.++|+||++++.+...
T Consensus 85 ~~~~~~~~~~~~~G~d~vid~~G~~~~~ 112 (175)
T d1cdoa2 85 EPISQVLSKMTNGGVDFSLECVGNVGVM 112 (175)
T ss_dssp SCHHHHHHHHHTSCBSEEEECSCCHHHH
T ss_pred hhHHHHHHhhccCCcceeeeecCCHHHH
Confidence 1 1111 24799999999986554
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=98.19 E-value=1.6e-06 Score=76.95 Aligned_cols=68 Identities=22% Similarity=0.318 Sum_probs=52.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
++|.|||+|.||..+++.|...|. +|+++||++++++. +.+.+..+ ...+..+.+.++|+||.|++..
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~-a~~~~~~~----~~~~~~~~~~~~DiIilavp~~ 68 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEK-AVERQLVD----EAGQDLSLLQTAKIIFLCTPIQ 68 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHH-HHHTTSCS----EEESCGGGGTTCSEEEECSCHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHH-HHHhhccc----eeeeecccccccccccccCcHh
Confidence 479999999999999999999998 59999999988754 44554321 1122234678999999999754
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.18 E-value=1.4e-06 Score=77.42 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=56.2
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
++|.|||.|.||..++++|...|. +|+++||++++.+.+... +. . ...+..+.+..+|+||.|.+.+..
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~~-~~---~--~~~~~~e~~~~~diii~~v~~~~~ 70 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAA-GA---S--AARSARDAVQGADVVISMLPASQH 70 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHT-TC---E--ECSSHHHHHTSCSEEEECCSCHHH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhhh-hc---c--ccchhhhhccccCeeeecccchhh
Confidence 579999999999999999999998 599999999988766543 32 1 224566777899999999988754
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=98.10 E-value=3.2e-06 Score=75.97 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=60.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc--ceeecccchHHhhcCCCcEEEEcCCCCccC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV--EIIYKPLSEMLSCAADADVVFTSTASEAPL 323 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~--~~~~~~~~~~~~~l~~aDVVI~AT~s~~~v 323 (513)
.+|.|||.|.||..+++.|...|.. |+++||++++.+++.+..... .......+++.+.+..+|++|.+.+.+..+
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v 80 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFV-VCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAV 80 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHH
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCe-EEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHH
Confidence 5799999999999999999999995 999999999998887753210 011233456667788999999998887654
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=98.09 E-value=1e-06 Score=77.06 Aligned_cols=86 Identities=17% Similarity=0.247 Sum_probs=56.7
Q ss_pred EEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccCCChhh
Q 010322 249 MLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDH 328 (513)
Q Consensus 249 VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~~ 328 (513)
|.+||+|.||+.+++.|.. +...+.|+||++++++++++.++.. ..+..+.+..+|+||.|++... + .+.
T Consensus 2 IgfIG~G~mg~~l~~~L~~-~~~~~~v~~R~~~~~~~l~~~~~~~------~~~~~~~~~~~DiVil~v~d~~-i--~~v 71 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKD-RYEIGYILSRSIDRARNLAEVYGGK------AATLEKHPELNGVVFVIVPDRY-I--KTV 71 (153)
T ss_dssp CEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCC------CCSSCCCCC---CEEECSCTTT-H--HHH
T ss_pred EEEEeCcHHHHHHHHHHHh-CCCEEEEEeCChhhhcchhhccccc------ccchhhhhccCcEEEEeccchh-h--hHH
Confidence 5799999999999998866 4444578999999999999887631 1234456788999999997542 2 333
Q ss_pred hhcCCchhhhcCCcEEEEeccC
Q 010322 329 VQDLPPVEAAVGGLRLFIDISV 350 (513)
Q Consensus 329 l~~~~~~~~~~~g~~viiDlav 350 (513)
+..+. .+..+++|++-
T Consensus 72 ~~~l~------~~~~ivi~~s~ 87 (153)
T d2i76a2 72 ANHLN------LGDAVLVHCSG 87 (153)
T ss_dssp HTTTC------CSSCCEEECCS
T ss_pred Hhhhc------ccceeeeeccc
Confidence 44332 13368888863
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=98.06 E-value=3.3e-06 Score=75.31 Aligned_cols=75 Identities=19% Similarity=0.182 Sum_probs=57.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC------cceee---cccchHHhhcCCCcEEEEc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG------VEIIY---KPLSEMLSCAADADVVFTS 316 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~------~~~~~---~~~~~~~~~l~~aDVVI~A 316 (513)
.+++.|||+|.||.+++..|...|. +|++++|++++.+.+...-.. ..... ....+..+.+.++|+||.|
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~ 79 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV 79 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence 3789999999999999999999998 599999999998766553210 00011 1124567788999999999
Q ss_pred CCCCc
Q 010322 317 TASEA 321 (513)
Q Consensus 317 T~s~~ 321 (513)
+++..
T Consensus 80 v~~~~ 84 (184)
T d1bg6a2 80 VPAIH 84 (184)
T ss_dssp SCGGG
T ss_pred EchhH
Confidence 98864
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=7e-06 Score=73.25 Aligned_cols=94 Identities=20% Similarity=0.248 Sum_probs=65.7
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-chHHhh------cCCCcEEEE
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL-SEMLSC------AADADVVFT 315 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~-~~~~~~------l~~aDVVI~ 315 (513)
.+|++|+|+|+ |++|.++++.++..|++ |+++.+++++. ++++++|... .++.. .+..+. -.++|+||+
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~-vi~~~~~~~~~-~~~~~~Ga~~-vi~~~~~~~~~~i~~~t~~~g~d~v~d 103 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYGLK-ILGTAGTEEGQ-KIVLQNGAHE-VFNHREVNYIDKIKKYVGEKGIDIIIE 103 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESSHHHH-HHHHHTTCSE-EEETTSTTHHHHHHHHHCTTCEEEEEE
T ss_pred CCCCEEEEEeccccccccccccccccCcc-ccccccccccc-ccccccCccc-ccccccccHHHHhhhhhccCCceEEee
Confidence 47999999996 99999999999999995 88888888876 7778888632 22221 123222 246999999
Q ss_pred cCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 316 STASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 316 AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
|++.+ .+ ...+..+. ++|+.+.++.
T Consensus 104 ~~g~~-~~--~~~~~~l~-----~~G~iv~~G~ 128 (174)
T d1yb5a2 104 MLANV-NL--SKDLSLLS-----HGGRVIVVGS 128 (174)
T ss_dssp SCHHH-HH--HHHHHHEE-----EEEEEEECCC
T ss_pred cccHH-HH--HHHHhccC-----CCCEEEEEec
Confidence 99853 32 34454432 4677777764
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.94 E-value=2.8e-05 Score=69.42 Aligned_cols=94 Identities=20% Similarity=0.215 Sum_probs=64.2
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec-ccchHHhhc------CCCcEEEE
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK-PLSEMLSCA------ADADVVFT 315 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~-~~~~~~~~l------~~aDVVI~ 315 (513)
-+|++|+|.|+ |++|..+++.++..|++ ++++.+++++. ++++++|... .+. ..+++.+.+ .++|+||+
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~~-vi~~~~~~~~~-~~l~~~Ga~~-vi~~~~~~~~~~v~~~t~~~g~d~v~d 100 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMIGAR-IYTTAGSDAKR-EMLSRLGVEY-VGDSRSVDFADEILELTDGYGVDVVLN 100 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHTCE-EEEEESSHHHH-HHHHTTCCSE-EEETTCSTHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCEEEEECCCCCcccccchhhcccccc-ceeeecccccc-cccccccccc-cccCCccCHHHHHHHHhCCCCEEEEEe
Confidence 46899999996 99999999999999995 77777888887 6777887532 222 122333322 47999999
Q ss_pred cCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 316 STASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 316 AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
|++.. .+ ...++.+. ++|+.+.++.
T Consensus 101 ~~g~~-~~--~~~~~~l~-----~~G~~v~~G~ 125 (183)
T d1pqwa_ 101 SLAGE-AI--QRGVQILA-----PGGRFIELGK 125 (183)
T ss_dssp CCCTH-HH--HHHHHTEE-----EEEEEEECSC
T ss_pred cccch-HH--HHHHHHhc-----CCCEEEEEcc
Confidence 99963 22 34454432 3565666653
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.92 E-value=7.8e-06 Score=74.09 Aligned_cols=87 Identities=16% Similarity=0.231 Sum_probs=67.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+.|++|+|||.|.||+.+++.+...|+ +|++++|++... . ....+++.+.+..+|+|+.+++..
T Consensus 39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~~~~-------~-----~~~~~~l~ell~~sDiv~~~~pl~~~ 105 (181)
T d1qp8a1 39 LIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPKEG-------P-----WRFTNSLEEALREARAAVCALPLNKH 105 (181)
T ss_dssp CCTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCCCS-------S-----SCCBSCSHHHHTTCSEEEECCCCSTT
T ss_pred cccCceEEEeccccccccceeeeecccc-cccccccccccc-------c-----eeeeechhhhhhccchhhcccccccc
Confidence 4689999999999999999999999999 599999975311 1 112346677889999999987664
Q ss_pred -ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 -APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 -~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+|+.+.+..+. ...++|+++
T Consensus 106 t~~li~~~~l~~mk-------~~ailIN~~ 128 (181)
T d1qp8a1 106 TRGLVKYQHLALMA-------EDAVFVNVG 128 (181)
T ss_dssp TTTCBCHHHHTTSC-------TTCEEEECS
T ss_pred cccccccceeeecc-------ccceEEecc
Confidence 4578888887764 237888876
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=97.84 E-value=1.6e-05 Score=72.78 Aligned_cols=93 Identities=14% Similarity=0.140 Sum_probs=68.2
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCC--
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTAS-- 319 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s-- 319 (513)
..+.|++|+|||+|.+|+.+++.|...|++ |..+++..... .....+. ...+++.+.+..+|+|+.+++.
T Consensus 45 ~eL~gktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~~~~~--~~~~~~~-----~~~~~l~~ll~~sD~i~~~~plt~ 116 (193)
T d1mx3a1 45 ARIRGETLGIIGLGRVGQAVALRAKAFGFN-VLFYDPYLSDG--VERALGL-----QRVSTLQDLLFHSDCVTLHCGLNE 116 (193)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECTTSCTT--HHHHHTC-----EECSSHHHHHHHCSEEEECCCCCT
T ss_pred eeeeCceEEEeccccccccceeeeeccccc-eeeccCccccc--chhhhcc-----ccccchhhccccCCEEEEeecccc
Confidence 457899999999999999999999999995 99999875432 1222221 2335667777889999887654
Q ss_pred -CccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 320 -EAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 320 -~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
+..+++.+.+..+. ...++|..|
T Consensus 117 ~T~~li~~~~l~~mk-------~~a~lIN~s 140 (193)
T d1mx3a1 117 HNHHLINDFTVKQMR-------QGAFLVNTA 140 (193)
T ss_dssp TCTTSBSHHHHTTSC-------TTEEEEECS
T ss_pred cchhhhhHHHHhccC-------CCCeEEecC
Confidence 45678888887653 236777765
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.83 E-value=2.1e-05 Score=70.39 Aligned_cols=112 Identities=21% Similarity=0.308 Sum_probs=75.6
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH----hCCcc---eeecccchHHhhcCCCcEEE
Q 010322 243 SHATARMLVIGAGK-MGKLVIKHLVAKGCTKMVVVNRSEERVAAICEE----LNGVE---IIYKPLSEMLSCAADADVVF 314 (513)
Q Consensus 243 ~l~g~~VlVIGaG~-mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~----~g~~~---~~~~~~~~~~~~l~~aDVVI 314 (513)
++.|++|+|||-+. +|+-++..|...|+. |++++.+.... +... ..... ......+.+.+....+||||
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~gaT-Vt~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvI 102 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDGAT-VYSVDVNNIQK--FTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI 102 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCE-EEEECSSEEEE--EESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred CCCCCEEEEECCccccHHHHHHHHHHCCCE-EEEeccccccc--cccccceeeeeeccccccccchhHHhhccccCCEEE
Confidence 68999999999875 599999999999995 88887642110 0000 00000 00111233555666899999
Q ss_pred EcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccccccCeEEEcc
Q 010322 315 TSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNV 369 (513)
Q Consensus 315 ~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~~l~gv~ly~i 369 (513)
+|+|.+...++.++++. | .++||++++++.++++.+. +..|.+
T Consensus 103 savG~p~~~i~~d~ik~---------G-avvIDvGi~~~~~~~v~~~--a~~iTP 145 (171)
T d1edza1 103 TGVPSENYKFPTEYIKE---------G-AVCINFACTKNFSDDVKEK--ASLYVP 145 (171)
T ss_dssp ECCCCTTCCBCTTTSCT---------T-EEEEECSSSCCBCGGGGTT--EEEEES
T ss_pred EccCCCccccChhhccc---------C-ceEeecccccccccchhhe--eeEEcC
Confidence 99999988677777643 2 7889999999988887653 334443
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=97.82 E-value=1e-05 Score=74.31 Aligned_cols=90 Identities=11% Similarity=0.214 Sum_probs=67.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCC---
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTAS--- 319 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s--- 319 (513)
.+.|++|+|||.|.+|+.+++.|...|++ |.++++...... . . .. . ..+++.+.+..+|+|+.+.+.
T Consensus 40 el~gk~vgIiG~G~IG~~va~~l~~fg~~-V~~~d~~~~~~~--~-~-~~--~---~~~~l~~~l~~sDii~~~~plt~~ 109 (197)
T d1j4aa1 40 EVRDQVVGVVGTGHIGQVFMQIMEGFGAK-VITYDIFRNPEL--E-K-KG--Y---YVDSLDDLYKQADVISLHVPDVPA 109 (197)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCHHH--H-H-TT--C---BCSCHHHHHHHCSEEEECSCCCGG
T ss_pred cccCCeEEEecccccchhHHHhHhhhccc-ccccCccccccc--c-c-ce--e---eeccccccccccccccccCCcccc
Confidence 46799999999999999999999999994 999998754321 1 1 11 1 234566778899999999765
Q ss_pred CccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 320 EAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 320 ~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
...+|+.+.+..+. ...++|.+|
T Consensus 110 T~~li~~~~l~~mk-------~~a~lIN~s 132 (197)
T d1j4aa1 110 NVHMINDESIAKMK-------QDVVIVNVS 132 (197)
T ss_dssp GTTCBSHHHHHHSC-------TTEEEEECS
T ss_pred ccccccHHHHhhhC-------CccEEEecC
Confidence 44578888887764 337888876
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.80 E-value=4.8e-05 Score=67.11 Aligned_cols=71 Identities=21% Similarity=0.212 Sum_probs=51.2
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
++|+|||+|-||..+++.|+..|. .+|+.+|++++.. +.+.+.+..+.... +........+|+||.||+..
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~-~~a~~~~~~~~~~~--~~~~~~~~~~dlIila~p~~ 73 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESI-SKAVDLGIIDEGTT--SIAKVEDFSPDFVMLSSPVR 73 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHH-HHHHHTTSCSEEES--CGGGGGGTCCSEEEECSCHH
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHH-HHHHHhhcchhhhh--hhhhhhccccccccccCCch
Confidence 579999999999999999999986 4799999998877 44555553211111 11122235789999999854
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=2.3e-05 Score=71.43 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=52.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh----------CCcc-------------eeecccch
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL----------NGVE-------------IIYKPLSE 302 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~----------g~~~-------------~~~~~~~~ 302 (513)
=++|.|||+|.||..+|..+...|+. |++++++++.++...+.+ +... ..+....+
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G~~-V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d 82 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATGHT-VVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD 82 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred eEEEEEECcCHHHHHHHHHHHhCCCc-EEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccch
Confidence 37999999999999999999999985 999999987543222211 1000 01223345
Q ss_pred HHhhcCCCcEEEEcCCCC
Q 010322 303 MLSCAADADVVFTSTASE 320 (513)
Q Consensus 303 ~~~~l~~aDVVI~AT~s~ 320 (513)
+.+++.++|+||+|.+-.
T Consensus 83 ~~~a~~~ad~ViEav~E~ 100 (192)
T d1f0ya2 83 AASVVHSTDLVVEAIVEN 100 (192)
T ss_dssp HHHHTTSCSEEEECCCSC
T ss_pred hHhhhcccceehhhcccc
Confidence 667788999999986543
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.74 E-value=6.9e-05 Score=70.49 Aligned_cols=77 Identities=25% Similarity=0.369 Sum_probs=59.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc---chHHh---hcCCCcEEEE
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL---SEMLS---CAADADVVFT 315 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~---~~~~~---~l~~aDVVI~ 315 (513)
++.||+++|.|+ ++||+++++.|...|++ |++++|+.++++++++++++......+. +++.+ .+...|++|+
T Consensus 2 dl~GK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVn 80 (242)
T d1cyda_ 2 NFSGLRALVTGAGKGIGRDTVKALHASGAK-VVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVN 80 (242)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEEE
Confidence 578999999999 89999999999999995 9999999999999998886532111122 22222 3467899999
Q ss_pred cCCCC
Q 010322 316 STASE 320 (513)
Q Consensus 316 AT~s~ 320 (513)
+.+..
T Consensus 81 nAg~~ 85 (242)
T d1cyda_ 81 NAALV 85 (242)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 87754
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.73 E-value=4.6e-05 Score=64.73 Aligned_cols=74 Identities=20% Similarity=0.374 Sum_probs=56.5
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceee-ccc--chHHhh-cCCCcEEEEcCCCCcc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIY-KPL--SEMLSC-AADADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~-~~~--~~~~~~-l~~aDVVI~AT~s~~~ 322 (513)
++|+|+|+|.+|+.+++.|...|. +|++++.++++.+.++++++.. +.. ... +-+.++ +..+|.++.+|+....
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~~~~-vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~ 78 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDAL-VINGDCTKIKTLEDAGIEDADMYIAVTGKEEV 78 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSE-EEESCTTSHHHHHHTTTTTCSEEEECCSCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhhhhh-hccCcccchhhhhhcChhhhhhhcccCCcHHH
Confidence 479999999999999999999997 5999999999998888776531 111 111 223333 6799999999988643
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.72 E-value=1.1e-05 Score=70.38 Aligned_cols=68 Identities=13% Similarity=0.156 Sum_probs=50.5
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAI-CEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~l-a~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.+|.|||+|.||..+++.|...|.. |+++++++.+...+ +...+. .++..+.+..+|+||.|++.+..
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~-------~~~~~e~~~~~diIi~~v~~~~~ 69 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVE-VVTSLEGRSPSTIERARTVGV-------TETSEEDVYSCPVVISAVTPGVA 69 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCE-EEECCTTCCHHHHHHHHHHTC-------EECCHHHHHTSSEEEECSCGGGH
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCe-EEEEcCchhHHHHHhhhcccc-------cccHHHHHhhcCeEEEEecCchH
Confidence 3799999999999999999999984 89999876555333 333321 12344566789999999987643
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=8.2e-05 Score=70.01 Aligned_cols=77 Identities=25% Similarity=0.376 Sum_probs=59.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc---chHH---hhcCCCcEEEE
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL---SEML---SCAADADVVFT 315 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~---~~~~---~~l~~aDVVI~ 315 (513)
.+.||+++|.|+ ++||+++++.|...|++ |++++|+.+++++++++++.......+. ++.. +.+...|++|+
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G~~-V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVn 82 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATGAR-VVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVN 82 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEE
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEe
Confidence 579999999999 99999999999999995 9999999999999998886532111122 2222 23567899999
Q ss_pred cCCCC
Q 010322 316 STASE 320 (513)
Q Consensus 316 AT~s~ 320 (513)
+.+..
T Consensus 83 nAg~~ 87 (244)
T d1pr9a_ 83 NAAVA 87 (244)
T ss_dssp CCCCC
T ss_pred ccccc
Confidence 87664
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=97.70 E-value=1.6e-05 Score=72.45 Aligned_cols=75 Identities=20% Similarity=0.263 Sum_probs=57.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC------Ccc--eeecccchHHhhcCCCcEEEEc
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN------GVE--IIYKPLSEMLSCAADADVVFTS 316 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g------~~~--~~~~~~~~~~~~l~~aDVVI~A 316 (513)
.-++|+|||+|.+|.+++..|...|. +|+++.|+++.++.+...-. +.. -.+....++.+++.++|+||.|
T Consensus 6 ~m~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiia 84 (189)
T d1n1ea2 6 YLNKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFV 84 (189)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEEC
T ss_pred eeceEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEc
Confidence 34679999999999999999998886 69999999998877765421 110 0122335678888999999999
Q ss_pred CCCC
Q 010322 317 TASE 320 (513)
Q Consensus 317 T~s~ 320 (513)
+|+.
T Consensus 85 vPs~ 88 (189)
T d1n1ea2 85 IPTQ 88 (189)
T ss_dssp SCHH
T ss_pred CcHH
Confidence 9875
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=97.68 E-value=4.3e-05 Score=69.63 Aligned_cols=94 Identities=11% Similarity=0.127 Sum_probs=67.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCC--
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTAS-- 319 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s-- 319 (513)
..+.|++++|||.|.+|+.+++.+...|.+ |..+++......... .... ...+++.+.+..+|+|+.+++.
T Consensus 43 ~~l~g~tvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~~~~~~~~~-~~~~-----~~~~~l~~ll~~sD~v~l~~plt~ 115 (191)
T d1gdha1 43 EKLDNKTLGIYGFGSIGQALAKRAQGFDMD-IDYFDTHRASSSDEA-SYQA-----TFHDSLDSLLSVSQFFSLNAPSTP 115 (191)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECSSCCCHHHHH-HHTC-----EECSSHHHHHHHCSEEEECCCCCT
T ss_pred ceecccceEEeecccchHHHHHHHHhhccc-cccccccccccchhh-cccc-----cccCCHHHHHhhCCeEEecCCCCc
Confidence 356799999999999999999999999985 888998654332222 2221 1235666778899999998765
Q ss_pred -CccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 320 -EAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 320 -~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
...+|+.+.+..+. ...++|..+
T Consensus 116 ~T~~li~~~~l~~mk-------~~a~lIN~s 139 (191)
T d1gdha1 116 ETRYFFNKATIKSLP-------QGAIVVNTA 139 (191)
T ss_dssp TTTTCBSHHHHTTSC-------TTEEEEECS
T ss_pred hHhheecHHHhhCcC-------CccEEEecC
Confidence 44688888887764 236777765
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.68 E-value=4.9e-05 Score=68.75 Aligned_cols=91 Identities=20% Similarity=0.223 Sum_probs=67.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCC---
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTAS--- 319 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s--- 319 (513)
.+.|++++|+|.|.+|+.+++.+...|. +|..++++...... ...+ +.. .++.+.+..+|+|+.+++.
T Consensus 41 ~l~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~~~~~~--~~~~---~~~---~~l~ell~~sDiv~~~~Plt~~ 111 (184)
T d1ygya1 41 EIFGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSPARA--AQLG---IEL---LSLDDLLARADFISVHLPKTPE 111 (184)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCHHHH--HHHT---CEE---CCHHHHHHHCSEEEECCCCSTT
T ss_pred cccceeeeeccccchhHHHHHHhhhccc-eEEeecCCCChhHH--hhcC---cee---ccHHHHHhhCCEEEEcCCCCch
Confidence 5689999999999999999999999998 59999987554322 1222 122 3556677889999998654
Q ss_pred CccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 320 EAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 320 ~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
+..+|+.+.+..+. ...++|..+
T Consensus 112 T~~lin~~~l~~mk-------~~a~lIN~s 134 (184)
T d1ygya1 112 TAGLIDKEALAKTK-------PGVIIVNAA 134 (184)
T ss_dssp TTTCBCHHHHTTSC-------TTEEEEECS
T ss_pred hhhhhhHHHHhhhC-------CCceEEEec
Confidence 45688988887764 237777776
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.67 E-value=4.8e-05 Score=66.26 Aligned_cols=76 Identities=18% Similarity=0.279 Sum_probs=54.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCc----ceeecccchHHhhcCCCcEEEEcCCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGV----EIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~----~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
..++|.|||+|.+|..++..|...|. .+|.++|++.++++..+..+... ........+ .+.+.+||+||.+++.
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d-~~~~~~adivvitag~ 82 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGE-YSDCKDADLVVITAGA 82 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECC-GGGGTTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeecc-HHHhccccEEEEeccc
Confidence 35799999999999999999999884 68999999998877666544210 001111123 3456899999999887
Q ss_pred Cc
Q 010322 320 EA 321 (513)
Q Consensus 320 ~~ 321 (513)
+.
T Consensus 83 ~~ 84 (146)
T d1ez4a1 83 PQ 84 (146)
T ss_dssp --
T ss_pred cc
Confidence 64
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.66 E-value=7.7e-05 Score=66.94 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=75.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccch-HHhh-----cCCCcEEEE
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSE-MLSC-----AADADVVFT 315 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~-~~~~-----l~~aDVVI~ 315 (513)
..+|.+|||.|+ |++|..+++.++..|++ |+.+.+++++. ++++++|.. ..+ .+++ ..+. -.++|+||+
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~-Viat~~s~~k~-~~~~~lGa~-~vi-~~~~~~~~~~~~~~~~gvD~vid 104 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKRGYT-VEASTGKAAEH-DYLRVLGAK-EVL-AREDVMAERIRPLDKQRWAAAVD 104 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCTTCH-HHHHHTTCS-EEE-ECC---------CCSCCEEEEEE
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHcCCc-eEEecCchHHH-HHHHhcccc-eee-ecchhHHHHHHHhhccCcCEEEE
Confidence 346899999996 99999999999999996 77888888887 777788753 222 2222 1221 147999999
Q ss_pred cCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcccc--cccCeEEEccCC
Q 010322 316 STASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVA--DVETARVYNVDD 371 (513)
Q Consensus 316 AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~v~--~l~gv~ly~iDd 371 (513)
+.+.+.. ...+..+. ++|+.+.+...-+.+....+. -+.++.++-++.
T Consensus 105 ~vgg~~~---~~~l~~l~-----~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv~~ 154 (176)
T d1xa0a2 105 PVGGRTL---ATVLSRMR-----YGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDS 154 (176)
T ss_dssp CSTTTTH---HHHHHTEE-----EEEEEEECSCCSSSCCCCCSHHHHHTTCEEEECCS
T ss_pred cCCchhH---HHHHHHhC-----CCceEEEeecccCcccCCCHHHHHHCCcEEEEEeC
Confidence 9987642 44555543 467677777543433332222 234566665543
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.65 E-value=5.1e-05 Score=66.22 Aligned_cols=78 Identities=22% Similarity=0.299 Sum_probs=56.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCc----ceeecccchHHhhcCCCcEEEEcCC
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGV----EIIYKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~----~~~~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
-.+++|.|||+|.+|..++..|...|. .+|.++|+++++++..+..+... ...........+.+.++|+||.+.+
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag 83 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG 83 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence 357899999999999999999998875 68999999998876666554310 0011112223456889999999988
Q ss_pred CCc
Q 010322 319 SEA 321 (513)
Q Consensus 319 s~~ 321 (513)
.+.
T Consensus 84 ~~~ 86 (148)
T d1ldna1 84 ANQ 86 (148)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=97.64 E-value=7.5e-05 Score=67.62 Aligned_cols=94 Identities=13% Similarity=0.118 Sum_probs=69.6
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC-
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE- 320 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~- 320 (513)
..+.+++|+|+|+|.+|+.+++.|...|.+ |..++|..... ......+. ....++.+.++.+|+|+.+.+..
T Consensus 40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~~~~~-~~~~~~~~-----~~~~~l~~~l~~sD~v~~~~plt~ 112 (188)
T d2naca1 40 YDLEAMHVGTVAAGRIGLAVLRRLAPFDVH-LHYTDRHRLPE-SVEKELNL-----TWHATREDMYPVCDVVTLNCPLHP 112 (188)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHGGGTCE-EEEECSSCCCH-HHHHHHTC-----EECSSHHHHGGGCSEEEECSCCCT
T ss_pred eeccccceeeccccccchhhhhhhhccCce-EEEEeeccccc-cccccccc-----cccCCHHHHHHhccchhhcccccc
Confidence 357899999999999999999999999985 99999864322 22333332 23356677788999999987654
Q ss_pred --ccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 321 --APLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 321 --~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..+|+.+.++.+. ...++|..|
T Consensus 113 ~T~~li~~~~l~~mk-------~ga~lIN~a 136 (188)
T d2naca1 113 ETEHMINDETLKLFK-------RGAYIVNTA 136 (188)
T ss_dssp TTTTCBSHHHHTTSC-------TTEEEEECS
T ss_pred cchhhhHHHHHHhCC-------CCCEEEecC
Confidence 4688888887763 236777765
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.63 E-value=6.2e-05 Score=62.31 Aligned_cols=75 Identities=11% Similarity=0.089 Sum_probs=52.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHH-HHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEER-VAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~r-a~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
++.|++|+|||+|.+|..-++.|...|+. |++++..... ...+++. +. +.+..-.-..+.+.++++|+.||+.+.
T Consensus 9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~-v~v~~~~~~~~~~~~~~~-~~--i~~~~~~~~~~dl~~~~lv~~at~d~~ 84 (113)
T d1pjqa1 9 QLRDRDCLIVGGGDVAERKARLLLEAGAR-LTVNALTFIPQFTVWANE-GM--LTLVEGPFDETLLDSCWLAIAATDDDT 84 (113)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBE-EEEEESSCCHHHHHHHTT-TS--CEEEESSCCGGGGTTCSEEEECCSCHH
T ss_pred EeCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEeccCChHHHHHHhc-CC--ceeeccCCCHHHhCCCcEEeecCCCHH
Confidence 57899999999999999999999999995 8888875533 2233332 21 222211111234678999999998764
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.63 E-value=6.4e-05 Score=66.02 Aligned_cols=77 Identities=12% Similarity=0.142 Sum_probs=57.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC------cceeecccchHHhhcCCCcEEEEcCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG------VEIIYKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~------~~~~~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
+.++|.|||+|.+|..++..|...|..++.++|.++++++..+..+.. .........+.++.+.++|+||.+.+
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag 85 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG 85 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence 568999999999999999988888988899999998877666555421 11112222345567889999999988
Q ss_pred CCc
Q 010322 319 SEA 321 (513)
Q Consensus 319 s~~ 321 (513)
.+.
T Consensus 86 ~~~ 88 (154)
T d1pzga1 86 LTK 88 (154)
T ss_dssp CSS
T ss_pred ccc
Confidence 763
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=97.60 E-value=2.9e-05 Score=71.21 Aligned_cols=91 Identities=11% Similarity=0.147 Sum_probs=67.8
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC-
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE- 320 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~- 320 (513)
..+.|++|+|||.|.||+.+++.|...|++ |+++++...... .. .. .+.++.+.+..+|+|+.+++..
T Consensus 41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~~~~~~-----~~--~~---~~~~l~~l~~~~D~v~~~~plt~ 109 (199)
T d1dxya1 41 KELGQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDPYPMKGD-----HP--DF---DYVSLEDLFKQSDVIDLHVPGIE 109 (199)
T ss_dssp CCGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCSSC-----CT--TC---EECCHHHHHHHCSEEEECCCCCG
T ss_pred ccccceeeeeeeccccccccccccccccee-eeccCCccchhh-----hc--ch---hHHHHHHHHHhcccceeeecccc
Confidence 357899999999999999999999999995 999998754320 00 11 2345666677899999987664
Q ss_pred --ccCCChhhhhcCCchhhhcCCcEEEEeccC
Q 010322 321 --APLFLKDHVQDLPPVEAAVGGLRLFIDISV 350 (513)
Q Consensus 321 --~~vi~~~~l~~~~~~~~~~~g~~viiDlav 350 (513)
..+|+.+.+..+. ...++|..+=
T Consensus 110 ~T~~li~~~~l~~mk-------~~a~lIN~aR 134 (199)
T d1dxya1 110 QNTHIINEAAFNLMK-------PGAIVINTAR 134 (199)
T ss_dssp GGTTSBCHHHHHHSC-------TTEEEEECSC
T ss_pred cccccccHHHhhccC-------CceEEEeccc
Confidence 4478888887763 3378888773
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.58 E-value=7e-05 Score=65.54 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=56.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc------ceeecccchHHhhcCCCcEEEEcCCC
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV------EIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~------~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
..+|.|||+|.+|..++..|...+..++.++|+++++++..+..+... ...+. ..+..+.+.++|+||.|.+.
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~-~~~~~~~~~~advvvitag~ 81 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVS-GSNTYDDLAGADVVIVTAGF 81 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEE-EECCGGGGTTCSEEEECCSC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEE-ecccccccCCCcEEEEeccc
Confidence 568999999999999998888889999999999988876666554321 11111 12345567899999999987
Q ss_pred Cc
Q 010322 320 EA 321 (513)
Q Consensus 320 ~~ 321 (513)
+.
T Consensus 82 ~~ 83 (150)
T d1t2da1 82 TK 83 (150)
T ss_dssp SS
T ss_pred cc
Confidence 64
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.56 E-value=8e-05 Score=66.81 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=53.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHH--HHHHHHHHhC-----C--cceeecccchHHhhcCCCcEEEEcC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEE--RVAAICEELN-----G--VEIIYKPLSEMLSCAADADVVFTST 317 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~--ra~~la~~~g-----~--~~~~~~~~~~~~~~l~~aDVVI~AT 317 (513)
++|.|||+|.+|.++|..|...|. +|+++.|..+ ....+..... . ....+...+++.+++.++|+||.|+
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~-~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~av 79 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGN-EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV 79 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCC-EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-EEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhccc
Confidence 479999999999999999999887 5999998533 3444432211 0 0112233467788899999999999
Q ss_pred CCCc
Q 010322 318 ASEA 321 (513)
Q Consensus 318 ~s~~ 321 (513)
++..
T Consensus 80 ps~~ 83 (180)
T d1txga2 80 STDG 83 (180)
T ss_dssp CGGG
T ss_pred chhh
Confidence 8753
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=4.3e-05 Score=69.28 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=67.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC--
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE-- 320 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~-- 320 (513)
.+.+++|+|+|.|.+|+.+++.+...|++ |+.+++..... ... ....+++.+.+..+|+|+.+.+..
T Consensus 41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~~~~~------~~~----~~~~~~l~ell~~sDii~i~~plt~~ 109 (188)
T d1sc6a1 41 EARGKKLGIIGYGHIGTQLGILAESLGMY-VYFYDIENKLP------LGN----ATQVQHLSDLLNMSDVVSLHVPENPS 109 (188)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCCC------CTT----CEECSCHHHHHHHCSEEEECCCSSTT
T ss_pred cccceEEEEeecccchhhhhhhcccccce-Eeeccccccch------hhh----hhhhhhHHHHHhhccceeecccCCcc
Confidence 46899999999999999999999999995 99999864321 011 112345667778899999986544
Q ss_pred -ccCCChhhhhcCCchhhhcCCcEEEEeccC
Q 010322 321 -APLFLKDHVQDLPPVEAAVGGLRLFIDISV 350 (513)
Q Consensus 321 -~~vi~~~~l~~~~~~~~~~~g~~viiDlav 350 (513)
..+|+.+.++.+. ...++|..|-
T Consensus 110 T~~li~~~~l~~mk-------~~a~lIN~aR 133 (188)
T d1sc6a1 110 TKNMMGAKEISLMK-------PGSLLINASR 133 (188)
T ss_dssp TTTCBCHHHHHHSC-------TTEEEEECSC
T ss_pred hhhhccHHHHhhCC-------CCCEEEEcCc
Confidence 4789999988764 3378888773
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.53 E-value=4.6e-05 Score=64.60 Aligned_cols=72 Identities=24% Similarity=0.367 Sum_probs=53.5
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecc---cchHHhh-cCCCcEEEEcCCCCc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKP---LSEMLSC-AADADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~---~~~~~~~-l~~aDVVI~AT~s~~ 321 (513)
|+++|+|+|.+|+.+++.|...|.. |++++.++++.+.+... +. ...+-+ .+-+.++ +..+|.||.+|+...
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~-vvvid~d~~~~~~~~~~-~~-~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~ 76 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHE-VLAVDINEEKVNAYASY-AT-HAVIANATEENELLSLGIRNFEYVIVAIGANI 76 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCC-CEEEESCHHHHHHTTTT-CS-EEEECCTTCTTHHHHHTGGGCSEEEECCCSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCe-EEEecCcHHHHHHHHHh-CC-cceeeecccchhhhccCCccccEEEEEcCchH
Confidence 5789999999999999999999985 99999999998776543 32 111111 1223333 678999999998764
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=97.53 E-value=0.00016 Score=64.35 Aligned_cols=75 Identities=15% Similarity=0.251 Sum_probs=55.2
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcc----ee-ecccchHHhhcCCCcEEEEcCCCCc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVE----II-YKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~----~~-~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.+|.|||.|.||..++++|...|++ |+++||++++++.+.+...... .. ....+++...+..++.++.+.....
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~-V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFK-VAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGA 80 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcc
Confidence 4799999999999999999999985 9999999999999988754210 11 1112234445667777777776654
Q ss_pred c
Q 010322 322 P 322 (513)
Q Consensus 322 ~ 322 (513)
.
T Consensus 81 ~ 81 (178)
T d1pgja2 81 A 81 (178)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.52 E-value=7.7e-05 Score=64.95 Aligned_cols=75 Identities=25% Similarity=0.359 Sum_probs=53.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhCC----cceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKG-CTKMVVVNRSEERVAAICEELNG----VEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G-~~~V~v~nRs~~ra~~la~~~g~----~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
++|.|||+|.+|..++..|...| +.++.++|++.++++..+..+.. ..........-.+.+.++|+||-+.|.+.
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~~ 81 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIK 81 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGG
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccccc
Confidence 78999999999999999999888 46899999999987655554421 00000111122455789999999888754
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=97.52 E-value=9.1e-05 Score=70.26 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=59.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec-----ccchHH-------hhcCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK-----PLSEML-------SCAAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~-----~~~~~~-------~~l~~ 309 (513)
++.||+++|.|+ ++||+++++.|...|++ |++++|+.++++++.++++.. +.+. ..++.. +....
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 79 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGAR-VVLADVLDEEGAATARELGDA-ARYQHLDVTIEEDWQRVVAYAREEFGS 79 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTTGGG-EEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhCCc-eEEEEcccCCHHHHHHHHHHHHHHcCC
Confidence 689999999999 89999999999999995 999999999999998888642 1111 112222 22357
Q ss_pred CcEEEEcCCCCc
Q 010322 310 ADVVFTSTASEA 321 (513)
Q Consensus 310 aDVVI~AT~s~~ 321 (513)
.|++|++.+...
T Consensus 80 iDilVnnAg~~~ 91 (254)
T d1hdca_ 80 VDGLVNNAGIST 91 (254)
T ss_dssp CCEEEECCCCCC
T ss_pred ccEEEecCcccc
Confidence 899999876643
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.51 E-value=6.1e-05 Score=65.90 Aligned_cols=88 Identities=26% Similarity=0.347 Sum_probs=61.1
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccCCChh
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKD 327 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~~~ 327 (513)
+|.+||.|.||..++++|...|. ++++||+.++..++.+..+. ...+ .+.+..+|++|.+.+.+..+..
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~--~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~i~~~~~~~~v~~-- 70 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFP--TLVWNRTFEKALRHQEEFGS---EAVP----LERVAEARVIFTCLPTTREVYE-- 70 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSC--EEEECSSTHHHHHHHHHHCC---EECC----GGGGGGCSEEEECCSSHHHHHH--
T ss_pred eEEEEeHHHHHHHHHHHHHhCCC--EEEEeCCHHHHHHHHHHcCC---cccc----cccccceeEEEecccchhhhhh--
Confidence 69999999999999999998775 56899999999888887653 2222 2334578999999888765422
Q ss_pred hhhcCCchhhhcCCcEEEEecc
Q 010322 328 HVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 328 ~l~~~~~~~~~~~g~~viiDla 349 (513)
....+... .....+++|++
T Consensus 71 ~~~~l~~~---~~~~~~iid~s 89 (156)
T d2cvza2 71 VAEALYPY---LREGTYWVDAT 89 (156)
T ss_dssp HHHHHTTT---CCTTEEEEECS
T ss_pred hhcccccc---ccccccccccc
Confidence 11111110 12347888886
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.50 E-value=0.00014 Score=64.25 Aligned_cols=77 Identities=14% Similarity=0.253 Sum_probs=57.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCc-----ceeecccchHHhhcCCCcEEEEcC
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGV-----EIIYKPLSEMLSCAADADVVFTST 317 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~-----~~~~~~~~~~~~~l~~aDVVI~AT 317 (513)
.+..+|.|||+|.+|..++..|...|. .++.++|+++++++..+..+... ........+ .+.+.++|+||.+.
T Consensus 18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d-~~~~~~adiVVitA 96 (160)
T d1i0za1 18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD-YSVTANSKIVVVTA 96 (160)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS-GGGGTTCSEEEECC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc-hhhcccccEEEEec
Confidence 467899999999999999999999885 68999999998886666554311 011111222 45578999999988
Q ss_pred CCCc
Q 010322 318 ASEA 321 (513)
Q Consensus 318 ~s~~ 321 (513)
+.+.
T Consensus 97 g~~~ 100 (160)
T d1i0za1 97 GVRQ 100 (160)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 8763
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.48 E-value=0.00012 Score=69.00 Aligned_cols=77 Identities=19% Similarity=0.227 Sum_probs=59.0
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec-----ccchHH-------hhcC
Q 010322 242 SSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK-----PLSEML-------SCAA 308 (513)
Q Consensus 242 ~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~-----~~~~~~-------~~l~ 308 (513)
+.+.||+++|.|+ ++||+.+++.|...|++ |++++|+++++++++++++.. .... ..+++. +...
T Consensus 2 G~L~gK~alITGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~~~~g 79 (244)
T d1nffa_ 2 GRLTGKVALVSGGARGMGASHVRAMVAEGAK-VVFGDILDEEGKAMAAELADA-ARYVHLDVTQPAQWKAAVDTAVTAFG 79 (244)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHTGGG-EEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhhCc-ceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 4689999999999 99999999999999995 999999999999999988642 1111 111222 2235
Q ss_pred CCcEEEEcCCCC
Q 010322 309 DADVVFTSTASE 320 (513)
Q Consensus 309 ~aDVVI~AT~s~ 320 (513)
..|++|++.+..
T Consensus 80 ~idilinnAG~~ 91 (244)
T d1nffa_ 80 GLHVLVNNAGIL 91 (244)
T ss_dssp CCCEEEECCCCC
T ss_pred CCeEEEECCccc
Confidence 789999987754
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=2.8e-05 Score=62.22 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=50.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC-cceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG-VEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~-~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
++.|++|+|+|.|..|++++++|...|+. |+++|.+.... ..+.+.. ........+ ...+.++|+||-+.|.|.
T Consensus 2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~-v~~~D~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~d~vi~SPGi~~ 76 (93)
T d2jfga1 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVT-PRVMDTRMTPP--GLDKLPEAVERHTGSLN--DEWLMAADLIVASPGIAL 76 (93)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCC-CEEEESSSSCT--TGGGSCTTSCEEESBCC--HHHHHHCSEEEECTTSCT
T ss_pred CcCCCEEEEEeECHHHHHHHHHHHHCCCE-EEEeeCCcCch--hHHHHhhccceeecccc--hhhhccCCEEEECCCCCC
Confidence 57899999999999999999999999985 99999854311 1111211 111121211 223457899999887763
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.46 E-value=9.1e-05 Score=66.71 Aligned_cols=94 Identities=17% Similarity=0.218 Sum_probs=65.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc-chHHhh-----cCCCcEEEEcCC
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL-SEMLSC-----AADADVVFTSTA 318 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~-~~~~~~-----l~~aDVVI~AT~ 318 (513)
+++|+|.|+ |++|..+++.++..|++.|+.+..++++...++..+|.. ..++.. ++..+. -.++|+||++++
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad-~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG 109 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFD-AAVNYKTGNVAEQLREACPGGVDVYFDNVG 109 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCS-EEEETTSSCHHHHHHHHCTTCEEEEEESSC
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccce-EEeeccchhHHHHHHHHhccCceEEEecCC
Confidence 478999996 999999999999999988888888888888888888753 222221 222222 247999999998
Q ss_pred CCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 319 SEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 319 s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.+. + ...++.+. ++|+.+.++.
T Consensus 110 g~~-~--~~~~~~l~-----~~G~iv~~G~ 131 (187)
T d1vj1a2 110 GDI-S--NTVISQMN-----ENSHIILCGQ 131 (187)
T ss_dssp HHH-H--HHHHTTEE-----EEEEEEEC--
T ss_pred chh-H--HHHhhhcc-----ccccEEEecc
Confidence 642 2 33444432 4677777764
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=0.00012 Score=68.85 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=57.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcc--eeec--ccchHH-------hhcCCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVE--IIYK--PLSEML-------SCAADA 310 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~--~~~~--~~~~~~-------~~l~~a 310 (513)
+++||+++|.|+ ++||+++++.|...|++ |++++|+.+++++++++++... +..+ ..++.. +.....
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~~-Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGAK-VIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEV 79 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCc
Confidence 478999999998 99999999999999995 9999999999999999886421 1111 111221 224578
Q ss_pred cEEEEcCCCC
Q 010322 311 DVVFTSTASE 320 (513)
Q Consensus 311 DVVI~AT~s~ 320 (513)
|++|++.+..
T Consensus 80 DilVnnAg~~ 89 (243)
T d1q7ba_ 80 DILVNNAGIT 89 (243)
T ss_dssp SEEEECCCCC
T ss_pred ceehhhhhhc
Confidence 9999886543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=0.00028 Score=62.39 Aligned_cols=74 Identities=12% Similarity=0.215 Sum_probs=55.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecc-cchHHhhc------CCCcEEEE
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKP-LSEMLSCA------ADADVVFT 315 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~-~~~~~~~l------~~aDVVI~ 315 (513)
.+|++|+|+|+ |.+|..+++.++..|++ |+++.+++++. ++++++|... .++. .+++.+.+ .++|+|++
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~-Vi~~~~s~~k~-~~~~~lGa~~-vi~~~~~d~~~~v~~~t~g~g~d~v~d 103 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKALGAK-LIGTVGTAQKA-QSALKAGAWQ-VINYREEDLVERLKEITGGKKVRVVYD 103 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHTCE-EEEEESSHHHH-HHHHHHTCSE-EEETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCEEEEEccccccchHHHHHHHHhCCe-EeecccchHHH-HHHHhcCCeE-EEECCCCCHHHHHHHHhCCCCeEEEEe
Confidence 46899999966 66999999999999995 99999999988 6677888532 2221 12333322 36899999
Q ss_pred cCCCC
Q 010322 316 STASE 320 (513)
Q Consensus 316 AT~s~ 320 (513)
+.+.+
T Consensus 104 ~~g~~ 108 (179)
T d1qora2 104 SVGRD 108 (179)
T ss_dssp CSCGG
T ss_pred CccHH
Confidence 99764
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.41 E-value=0.00081 Score=61.35 Aligned_cols=92 Identities=21% Similarity=0.264 Sum_probs=67.3
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
+++.|++|+|.|.|.+|..++++|...|++ |++++.+.++... +..++. ...+.+++.. ..|||++-|...
T Consensus 23 ~~L~gk~v~IqG~G~VG~~~A~~L~~~Gak-vvv~d~d~~~~~~-~~~~g~---~~~~~~~~~~--~~~DI~iPcA~~-- 93 (201)
T d1c1da1 23 GSLDGLTVLVQGLGAVGGSLASLAAEAGAQ-LLVADTDTERVAH-AVALGH---TAVALEDVLS--TPCDVFAPCAMG-- 93 (201)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHH-HHHTTC---EECCGGGGGG--CCCSEEEECSCS--
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEecchHHHHHH-HHhhcc---cccCcccccc--ccceeeeccccc--
Confidence 479999999999999999999999999985 9999999888744 344443 4444454432 489999988443
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEeccC
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDISV 350 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDlav 350 (513)
..|+.+....+. -.+++.-+.
T Consensus 94 ~~I~~~~a~~i~--------ak~i~e~AN 114 (201)
T d1c1da1 94 GVITTEVARTLD--------CSVVAGAAN 114 (201)
T ss_dssp CCBCHHHHHHCC--------CSEECCSCT
T ss_pred ccccHHHHhhhh--------hheeeccCC
Confidence 456777766542 256777663
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=97.39 E-value=0.00029 Score=66.03 Aligned_cols=77 Identities=13% Similarity=0.217 Sum_probs=58.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec--ccchHH-------hhcCCCcE
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK--PLSEML-------SCAADADV 312 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~--~~~~~~-------~~l~~aDV 312 (513)
.+.||+++|.|+ ++||+.+++.|...|++ |++++|+.+++++++++++...+..+ ..++.. +.....|+
T Consensus 2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~-V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 80 (242)
T d1ulsa_ 2 RLKDKAVLITGAAHGIGRATLELFAKEGAR-LVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDG 80 (242)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceE
Confidence 368999999998 89999999999999995 99999999999888888764222211 112222 22357899
Q ss_pred EEEcCCCC
Q 010322 313 VFTSTASE 320 (513)
Q Consensus 313 VI~AT~s~ 320 (513)
+|++.+..
T Consensus 81 lVnnAG~~ 88 (242)
T d1ulsa_ 81 VVHYAGIT 88 (242)
T ss_dssp EEECCCCC
T ss_pred EEECCccc
Confidence 99987764
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.38 E-value=0.00022 Score=61.73 Aligned_cols=74 Identities=22% Similarity=0.335 Sum_probs=54.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCc-----ceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGV-----EIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~-----~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+|.|||+|.+|..++..|...|. .++.++|+++++++..+..+... ...+...++ .+.+.++|+||.+.+.+
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~-~~~~~daDvVVitaG~~ 80 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDADMVVITAGPR 80 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTCSEEEECCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCC-HHHhhCCcEEEEecccc
Confidence 479999999999999999998886 68999999998876554443210 112222233 44578999999998876
Q ss_pred c
Q 010322 321 A 321 (513)
Q Consensus 321 ~ 321 (513)
.
T Consensus 81 ~ 81 (143)
T d1llda1 81 Q 81 (143)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=0.0004 Score=65.47 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=57.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecc---cchHH-------hhcCCCc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKP---LSEML-------SCAADAD 311 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~---~~~~~-------~~l~~aD 311 (513)
.+.||+++|.|+ ++||+++++.|...|++ |++++|+.+++++++++++.......+ .++.. +.....|
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 81 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGAR-VVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLD 81 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCC
Confidence 478999999999 99999999999999995 999999999999999887642111111 12222 2235789
Q ss_pred EEEEcCCC
Q 010322 312 VVFTSTAS 319 (513)
Q Consensus 312 VVI~AT~s 319 (513)
++|++.+.
T Consensus 82 ilVnnAG~ 89 (250)
T d1ydea1 82 CVVNNAGH 89 (250)
T ss_dssp EEEECCCC
T ss_pred EEEecccc
Confidence 99998774
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=3.6e-05 Score=70.03 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=54.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee---ecccchHHhhcCCCcEEEEcCCCC
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII---YKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~---~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
..++|+|+|+ |.+|+.++..|...|. +|+++.|++.+...... ....+. +...+++.+++.++|+||.+++..
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~~~~--~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~ 78 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGP--RPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR 78 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSC--CCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhcccccc--cccccccccccchhhHHHHhcCCCEEEEEeccC
Confidence 3689999997 9999999999999998 59999999887532211 111111 122345667789999999999875
Q ss_pred cc
Q 010322 321 AP 322 (513)
Q Consensus 321 ~~ 322 (513)
.+
T Consensus 79 ~~ 80 (205)
T d1hdoa_ 79 ND 80 (205)
T ss_dssp TC
T ss_pred Cc
Confidence 43
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.35 E-value=0.00023 Score=62.70 Aligned_cols=78 Identities=13% Similarity=0.254 Sum_probs=56.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCc----c-eeecccchHHhhcCCCcEEEEc
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGV----E-IIYKPLSEMLSCAADADVVFTS 316 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~----~-~~~~~~~~~~~~l~~aDVVI~A 316 (513)
.+...+|.|||+|.+|..++..|...|. .++.++|++.++++..+..+... . .......+ .+.+.++|+||.+
T Consensus 16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d-~~~~~~adivvit 94 (159)
T d2ldxa1 16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD-YNVSANSKLVIIT 94 (159)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS-GGGGTTEEEEEEC
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc-hhhhccccEEEEe
Confidence 4556789999999999999999998875 57999999998876655554310 0 11112223 4557899999998
Q ss_pred CCCCc
Q 010322 317 TASEA 321 (513)
Q Consensus 317 T~s~~ 321 (513)
.+.+.
T Consensus 95 ag~~~ 99 (159)
T d2ldxa1 95 AGARM 99 (159)
T ss_dssp CSCCC
T ss_pred ccccc
Confidence 88754
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.33 E-value=1.5e-05 Score=69.81 Aligned_cols=74 Identities=14% Similarity=0.138 Sum_probs=49.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-ceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-EIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
++|+|||+|.||..++..|...|. +|++++|++++...+....... ........+..+.+..+|+||.||++..
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~ 75 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQ 75 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccc
Confidence 479999999999999999999998 5999999876442111000000 0011111222344568999999999864
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.33 E-value=0.00022 Score=61.56 Aligned_cols=74 Identities=19% Similarity=0.285 Sum_probs=54.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc------ceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV------EIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~------~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
++|.|||+|.+|..++..|...+..++.++|.++++++..+..+... ...+....+ .+.+.++|+||.+.|.+
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d-~~~~~~advvvitag~~ 80 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNN-YADTANSDVIVVTSGAP 80 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECCSCC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCc-HHHhcCCCEEEEeeecc
Confidence 58999999999999999999888888999999888776655554321 111111223 34578999999999876
Q ss_pred c
Q 010322 321 A 321 (513)
Q Consensus 321 ~ 321 (513)
.
T Consensus 81 ~ 81 (142)
T d1uxja1 81 R 81 (142)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=97.33 E-value=0.00018 Score=67.98 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=58.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec-----ccchHHh-------hcCCC
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK-----PLSEMLS-------CAADA 310 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~-----~~~~~~~-------~l~~a 310 (513)
++||+++|.|+ ++||+++++.|...|++ |.+++|+.+++++++++++.. .... ..+++.+ .....
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~~~~~-~~~~~~Dvt~~~~v~~~~~~~~~~~g~i 80 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGAR-VAIADINLEAARATAAEIGPA-ACAIALDVTDQASIDRCVAELLDRWGSI 80 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTEE-EEEEESCHHHHHHHHHHHCTT-EEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhCCc-eEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence 68999999999 99999999999999985 999999999999999998742 1111 1122222 23578
Q ss_pred cEEEEcCCCC
Q 010322 311 DVVFTSTASE 320 (513)
Q Consensus 311 DVVI~AT~s~ 320 (513)
|++|++.+..
T Consensus 81 DilVnnAg~~ 90 (256)
T d1k2wa_ 81 DILVNNAALF 90 (256)
T ss_dssp CEEEECCCCC
T ss_pred cEEEeecccc
Confidence 9999997754
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=0.00028 Score=66.36 Aligned_cols=80 Identities=11% Similarity=0.205 Sum_probs=59.8
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc--cee--ecc---cchHH-------hh
Q 010322 242 SSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV--EII--YKP---LSEML-------SC 306 (513)
Q Consensus 242 ~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~--~~~--~~~---~~~~~-------~~ 306 (513)
.++.|+.++|.|+ ++||+.+++.|...|++ |++++|+.++++++++++... .+. ..+ .++.. +.
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~-V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~ 81 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSK-LVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAE 81 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 3689999999999 88999999999999995 999999999998888776311 111 111 12222 23
Q ss_pred cCCCcEEEEcCCCCcc
Q 010322 307 AADADVVFTSTASEAP 322 (513)
Q Consensus 307 l~~aDVVI~AT~s~~~ 322 (513)
....|++|++.+...+
T Consensus 82 ~g~idilinnag~~~~ 97 (244)
T d1yb1a_ 82 IGDVSILVNNAGVVYT 97 (244)
T ss_dssp TCCCSEEEECCCCCCC
T ss_pred cCCCceeEeecccccc
Confidence 4579999999887643
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=0.00066 Score=60.29 Aligned_cols=92 Identities=15% Similarity=0.218 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcccH-HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHh
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGAGK-MGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLS 305 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGaG~-mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~ 305 (513)
++.+.+++.+. .+ .++.|++|+|||.+. +|+-++..|...|+. |++++.... ++.+
T Consensus 22 Tp~aii~lL~~-~~-i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gat-Vt~~~~~t~--------------------~l~~ 78 (170)
T d1a4ia1 22 TPKGCLELIKE-TG-VPIAGRHAVVVGRSKIVGAPMHDLLLWNNAT-VTTCHSKTA--------------------HLDE 78 (170)
T ss_dssp HHHHHHHHHHT-TT-CCCTTCEEEEECCCTTTHHHHHHHHHHTTCE-EEEECTTCS--------------------SHHH
T ss_pred hHHHHHHHHHH-hC-cccccceEEEEecCCccchHHHHHHHhccCc-eEEEecccc--------------------cHHH
Confidence 44455566654 33 578999999999955 899999999999985 888886421 2233
Q ss_pred hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 306 CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
.+..+|+||+|+|.+.. ++.++++. + .++||.++.+
T Consensus 79 ~~~~aDivi~a~G~~~~-i~~~~vk~---------g-~iviDvgi~~ 114 (170)
T d1a4ia1 79 EVNKGDILVVATGQPEM-VKGEWIKP---------G-AIVIDCGINY 114 (170)
T ss_dssp HHTTCSEEEECCCCTTC-BCGGGSCT---------T-CEEEECCCBC
T ss_pred HHhhccchhhccccccc-cccccccC---------C-CeEeccCccc
Confidence 45689999999999876 56666642 2 6899998644
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=97.29 E-value=0.00024 Score=67.09 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=59.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCccee----ecccchHH-------hhcCCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEII----YKPLSEML-------SCAADA 310 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~----~~~~~~~~-------~~l~~a 310 (513)
.++||+++|.|+ ++||+++++.|...|++ |++++|+.+++++++++++..... +...++.. +.....
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 81 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAK-VAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTL 81 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 478999999998 89999999999999995 999999999999999998753111 11111222 223578
Q ss_pred cEEEEcCCCCc
Q 010322 311 DVVFTSTASEA 321 (513)
Q Consensus 311 DVVI~AT~s~~ 321 (513)
|++|++.+...
T Consensus 82 DilVnnAG~~~ 92 (253)
T d1hxha_ 82 NVLVNNAGILL 92 (253)
T ss_dssp CEEEECCCCCC
T ss_pred CeEEecccccC
Confidence 99999987643
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.29 E-value=0.00069 Score=60.23 Aligned_cols=94 Identities=20% Similarity=0.241 Sum_probs=65.1
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccc-h-HH---hh--cCCCcEEEE
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLS-E-ML---SC--AADADVVFT 315 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~-~-~~---~~--l~~aDVVI~ 315 (513)
.+|++|+|.|+ |.+|..+++.++..|+ +|+.+.+++++. ++++.+|... .+...+ + .. +. -.++|+||+
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~-~~~~~~Ga~~-vi~~~~~~~~~~~~~~~~~~Gvd~v~D 104 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKI-AYLKQIGFDA-AFNYKTVNSLEEALKKASPDGYDCYFD 104 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHH-HHHHHTTCSE-EEETTSCSCHHHHHHHHCTTCEEEEEE
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHH-HHHHhhhhhh-hcccccccHHHHHHHHhhcCCCceeEE
Confidence 47999999999 7899999999999999 588888998887 6677777532 222221 1 11 11 257999999
Q ss_pred cCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 316 STASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 316 AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
|++.+ .. .+.+..+. ++|..+.++.
T Consensus 105 ~vG~~-~~--~~~~~~l~-----~~G~~v~~G~ 129 (182)
T d1v3va2 105 NVGGE-FL--NTVLSQMK-----DFGKIAICGA 129 (182)
T ss_dssp SSCHH-HH--HHHGGGEE-----EEEEEEECCC
T ss_pred ecCch-hh--hhhhhhcc-----CCCeEEeecc
Confidence 99853 22 34454432 4676777764
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=97.28 E-value=8.6e-05 Score=67.10 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=33.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVA 284 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~ 284 (513)
=++|.|||+|.||..+|..+...|+. |++++++++..+
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~-V~l~D~~~~~l~ 41 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTP-ILMKDINEHGIE 41 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCC-EEEECSSHHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCe-EEEEECCHHHHh
Confidence 36899999999999999999999986 999999987653
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.28 E-value=0.00027 Score=60.88 Aligned_cols=73 Identities=18% Similarity=0.255 Sum_probs=52.8
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCc-----ceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGV-----EIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~-----~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+|.|||+|.+|..++..|...|. .+|.++|+++++++..+..+... ...+ ..+..+.+.++|+||.|.+.+
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~--~~~~~~~~~~adivvitag~~ 78 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANI--YAGDYADLKGSDVVIVAAGVP 78 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEE--EECCGGGGTTCSEEEECCCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccc--cCCcHHHhcCCCEEEEecccc
Confidence 379999999999999998888775 68999999998876555543210 1111 122345678999999998775
Q ss_pred c
Q 010322 321 A 321 (513)
Q Consensus 321 ~ 321 (513)
.
T Consensus 79 ~ 79 (140)
T d1a5za1 79 Q 79 (140)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=97.26 E-value=0.00042 Score=64.83 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=57.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec--cc---chHH-------hhcCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK--PL---SEML-------SCAAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~--~~---~~~~-------~~l~~ 309 (513)
.+.||+++|.|+ +++|..+++.|...|+ +|++++|+.+++++..+++++. +... +. ++.. +....
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~Dls~~~~i~~~~~~i~~~~g~ 79 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAE-AIAVVADVSDPKAVEAVFAEALEEFGR 79 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSS-EEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCc-eEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 478999999999 8899999999999999 5999999999998888888742 1111 11 2222 22357
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|++|++.+..
T Consensus 80 iDiLinnAg~~ 90 (241)
T d2a4ka1 80 LHGVAHFAGVA 90 (241)
T ss_dssp CCEEEEGGGGT
T ss_pred ccEeccccccc
Confidence 89999876543
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=97.25 E-value=0.00037 Score=66.13 Aligned_cols=77 Identities=14% Similarity=0.316 Sum_probs=58.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-ceeec--c---cchHHh-------hcC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-EIIYK--P---LSEMLS-------CAA 308 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~--~---~~~~~~-------~l~ 308 (513)
.+.||.++|.|+ ++||+.+++.|...|++ |++++|+.+++++++++++.. .+.+. + .+++.+ ...
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAK-VVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHG 81 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 478999999998 89999999999999995 999999999999999887532 11111 1 122222 235
Q ss_pred CCcEEEEcCCCC
Q 010322 309 DADVVFTSTASE 320 (513)
Q Consensus 309 ~aDVVI~AT~s~ 320 (513)
..|++|++.+..
T Consensus 82 ~iD~lVnnAG~~ 93 (268)
T d2bgka1 82 KLDIMFGNVGVL 93 (268)
T ss_dssp CCCEEEECCCCC
T ss_pred Ccceeccccccc
Confidence 789999988753
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.25 E-value=0.00016 Score=63.35 Aligned_cols=44 Identities=32% Similarity=0.495 Sum_probs=39.7
Q ss_pred CeEEEE-cccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC
Q 010322 247 ARMLVI-GAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN 291 (513)
Q Consensus 247 ~~VlVI-GaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g 291 (513)
+||.|| |+|.||+.+++.|...|++ |++++|++++++.++++++
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~-V~l~~R~~e~~~~l~~~i~ 45 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHE-IVVGSRREEKAEAKAAEYR 45 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSHHHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHH
Confidence 478999 7899999999999999985 9999999999998888764
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.24 E-value=0.00026 Score=61.14 Aligned_cols=42 Identities=26% Similarity=0.506 Sum_probs=35.8
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Q 010322 244 HATARMLVIG-AGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAI 286 (513)
Q Consensus 244 l~g~~VlVIG-aG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~l 286 (513)
..-++|+||| .|.||..+++.|...|+. |+++||+.....+.
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~-V~~~d~~~~~~~~~ 49 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASGYP-ISILDREDWAVAES 49 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTTCC-EEEECTTCGGGHHH
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCCC-cEecccccccccch
Confidence 4567999999 899999999999999995 99999987655443
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.22 E-value=0.00076 Score=58.08 Aligned_cols=74 Identities=11% Similarity=0.130 Sum_probs=53.5
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhC------CcceeecccchHHhhcCCCcEEEEcCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELN------GVEIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g------~~~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
.+|.|||+|.+|..++..|...|. .++.++|+++++++..+..+. .....+....+ .+.+.++|+||.+.+.
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiVvitag~ 79 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL 79 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEEEEeccc
Confidence 479999999999999999988764 789999999988765444332 11112222233 4578899999998886
Q ss_pred Cc
Q 010322 320 EA 321 (513)
Q Consensus 320 ~~ 321 (513)
+.
T Consensus 80 ~~ 81 (142)
T d1ojua1 80 AR 81 (142)
T ss_dssp CC
T ss_pred cC
Confidence 54
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=97.22 E-value=0.00042 Score=65.50 Aligned_cols=78 Identities=15% Similarity=0.197 Sum_probs=56.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc--ceee--ccc---chHH-------hhc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV--EIIY--KPL---SEML-------SCA 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~--~~~~--~~~---~~~~-------~~l 307 (513)
++.||+|+|.|+ ++||+++++.|...|+ +|++++|+++++++.++++... ...+ .+. +++. +..
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHh
Confidence 689999999997 9999999999999999 5999999999888777765311 1111 111 2221 223
Q ss_pred -CCCcEEEEcCCCCc
Q 010322 308 -ADADVVFTSTASEA 321 (513)
Q Consensus 308 -~~aDVVI~AT~s~~ 321 (513)
...|++|++.+...
T Consensus 82 ~g~idilinnag~~~ 96 (258)
T d1ae1a_ 82 DGKLNILVNNAGVVI 96 (258)
T ss_dssp TSCCCEEEECCCCCC
T ss_pred CCCcEEEeccccccc
Confidence 24789999877654
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=97.22 E-value=0.00029 Score=67.23 Aligned_cols=76 Identities=18% Similarity=0.332 Sum_probs=57.9
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec--c---cchHH-------hhcCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK--P---LSEML-------SCAAD 309 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~--~---~~~~~-------~~l~~ 309 (513)
.+.||+++|.|+ ++||+++++.|...|+ +|++++|+.++++++.++++.. +... + .++.. +....
T Consensus 2 ~L~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~-~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 79 (276)
T d1bdba_ 2 KLKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHGDN-VLGIVGDVRSLEDQKQAASRCVARFGK 79 (276)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGG-EEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCC-eeEEecccccHHHHHHHHHHHHHHhCC
Confidence 368999999999 9999999999999999 5999999999999988888642 1111 1 11222 22457
Q ss_pred CcEEEEcCCCC
Q 010322 310 ADVVFTSTASE 320 (513)
Q Consensus 310 aDVVI~AT~s~ 320 (513)
.|++|++.+..
T Consensus 80 idilvnnAG~~ 90 (276)
T d1bdba_ 80 IDTLIPNAGIW 90 (276)
T ss_dssp CCEEECCCCCC
T ss_pred ccccccccccc
Confidence 89999987753
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=97.21 E-value=0.00046 Score=63.89 Aligned_cols=103 Identities=16% Similarity=0.277 Sum_probs=72.6
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC--------HHHH----HHHHHHhCCcceeecccchHHhhcCC
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS--------EERV----AAICEELNGVEIIYKPLSEMLSCAAD 309 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs--------~~ra----~~la~~~g~~~~~~~~~~~~~~~l~~ 309 (513)
..+.+.+|+++|||..|..++..+...|.++++++||. .... ..+++.... .....++.+.+.+
T Consensus 22 ~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~----~~~~~~l~~~l~g 97 (222)
T d1vl6a1 22 KKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP----ERLSGDLETALEG 97 (222)
T ss_dssp CCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT----TCCCSCHHHHHTT
T ss_pred CChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcc----hhhhcchHhhccC
Confidence 57899999999999999999999999999999999984 1111 122322111 1123466777889
Q ss_pred CcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC-CCCcc
Q 010322 310 ADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR-NVGSC 357 (513)
Q Consensus 310 aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr-didp~ 357 (513)
+|+++.++. ..+++.+.+..+. .+++++-||.|- .+++.
T Consensus 98 ~~~~~g~~~--~~~~~~e~m~~~~-------~rPIIFpLSNPt~~~e~~ 137 (222)
T d1vl6a1 98 ADFFIGVSR--GNILKPEWIKKMS-------RKPVIFALANPVPEIDPE 137 (222)
T ss_dssp CSEEEECSC--SSCSCHHHHTTSC-------SSCEEEECCSSSCSSCHH
T ss_pred cceeccccc--cccccHHHHhhcC-------CCCEEEecCCCccchhhh
Confidence 999888875 3566777776543 347888999884 34443
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.20 E-value=0.00029 Score=60.80 Aligned_cols=75 Identities=16% Similarity=0.237 Sum_probs=49.2
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCc-c--eeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGV-E--IIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~-~--~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.+|.|||+|.+|..++..|...|. .++.++|++.++++..+..+... . ..........+.+.++|+||.+.+.+.
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~ 80 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR 80 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEeccccc
Confidence 479999999999999999998875 57999999988766666555421 0 000111223455788999988877653
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.19 E-value=0.00046 Score=59.36 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=51.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCc------ceeecccchHHhhcCCCcEEEEcCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGV------EIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~------~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
.+|.|||+|.+|..++..|...|. .++.++|+++++++..+..+... ...+.. .+..+.+.++|+||.|.|.
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~-~~~~~~~~dadvvvitag~ 79 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG-SNDYADTANSDIVIITAGL 79 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE-ESCGGGGTTCSEEEECCSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEe-cCCHHHhcCCeEEEEEEec
Confidence 379999999999999999998874 68999999987765544333211 112221 2334567899999998876
Q ss_pred C
Q 010322 320 E 320 (513)
Q Consensus 320 ~ 320 (513)
+
T Consensus 80 ~ 80 (142)
T d1guza1 80 P 80 (142)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=97.19 E-value=0.00022 Score=63.21 Aligned_cols=93 Identities=14% Similarity=0.223 Sum_probs=65.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHH-hh-----cCCCcEEEEcC
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEML-SC-----AADADVVFTST 317 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~-~~-----l~~aDVVI~AT 317 (513)
++.+|||-|+ |++|..+++.++..|++ |+.+.+++++. ++++++|.. .+...++.. +. -.++|+||++.
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~-Viat~~s~~k~-~~~~~lGad--~vi~~~~~~~~~~~~~~~~gvd~vid~v 98 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYD-VVASTGNREAA-DYLKQLGAS--EVISREDVYDGTLKALSKQQWQGAVDPV 98 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCC-EEEEESSSSTH-HHHHHHTCS--EEEEHHHHCSSCCCSSCCCCEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCc-eEEEecCHHHH-HHHHhhccc--ceEeccchhchhhhcccCCCceEEEecC
Confidence 5778999996 99999999999999996 88888888887 566778753 222333221 11 14799999999
Q ss_pred CCCccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 318 ASEAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 318 ~s~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
+.+.. .+.++.+. ++|+.+.+...
T Consensus 99 gg~~~---~~~~~~l~-----~~G~iv~~G~~ 122 (167)
T d1tt7a2 99 GGKQL---ASLLSKIQ-----YGGSVAVSGLT 122 (167)
T ss_dssp CTHHH---HHHHTTEE-----EEEEEEECCCS
T ss_pred cHHHH---HHHHHHhc-----cCceEEEeecc
Confidence 86532 34454442 46777777754
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.17 E-value=0.0006 Score=58.91 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=53.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCc--c-eeecccchHHhhcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGV--E-IIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~--~-~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+|.|||| |.+|..++..|...|. .++.++|.+..+++.+.-..... . .......+..+.++++|+||-+.+.+
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~ 79 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP 79 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcC
Confidence 37999996 9999999999998886 78999999876654432222111 0 11223356677789999999987765
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=97.16 E-value=0.00047 Score=60.51 Aligned_cols=72 Identities=14% Similarity=0.252 Sum_probs=53.5
Q ss_pred eEEEEcccHHHHH-HHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 248 RMLVIGAGKMGKL-VIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 248 ~VlVIGaG~mG~~-ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
+|+|||+|.+|.. .+..+...+.-++.+++++++++..+++.++.. ..+.+++++.+ .+.|+|+-||+....
T Consensus 3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~ll~--~~iD~V~I~tp~~~H 75 (167)
T d1xeaa1 3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVS-ATCTDYRDVLQ--YGVDAVMIHAATDVH 75 (167)
T ss_dssp EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCC-CCCSSTTGGGG--GCCSEEEECSCGGGH
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccc-cccccHHHhcc--cccceeccccccccc
Confidence 7999999999975 667776664446889999999999999998742 12334444332 378999999987654
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.15 E-value=0.00054 Score=64.45 Aligned_cols=76 Identities=20% Similarity=0.247 Sum_probs=55.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh----CCcceeec--c---cchHH-------h
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL----NGVEIIYK--P---LSEML-------S 305 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~----g~~~~~~~--~---~~~~~-------~ 305 (513)
++.||+++|.|+ ++||+.+++.|...|++ |.+++|+.+++.+.++++ +.. +... + .+++. +
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~l~~~~g~~-~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCS-VVVASRNLEEASEAAQKLTEKYGVE-TMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHCCC-EEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHHhCCc-EEEEEccCCCHHHHHHHHHHHHH
Confidence 578999999999 89999999999999995 999999998876655543 321 1111 1 12222 2
Q ss_pred hcCCCcEEEEcCCCC
Q 010322 306 CAADADVVFTSTASE 320 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~ 320 (513)
.....|++|++.+..
T Consensus 80 ~~g~iDiLVnnAG~~ 94 (251)
T d1vl8a_ 80 KFGKLDTVVNAAGIN 94 (251)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 235799999998764
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.12 E-value=0.00026 Score=65.91 Aligned_cols=71 Identities=17% Similarity=0.266 Sum_probs=52.4
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc----chHHhhcCCCcEEEEcCC
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL----SEMLSCAADADVVFTSTA 318 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~----~~~~~~l~~aDVVI~AT~ 318 (513)
++||+++|.|+ ++||+.+++.|...|++ |++++|+.+.+++ .+.. ....+. +...+.+...|++|++.+
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~-V~~~~r~~~~l~~----~~~~-~~~~Dv~~~~~~~~~~~g~iD~lVnnAG 75 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAE-VTICARNEELLKR----SGHR-YVVCDLRKDLDLLFEKVKEVDILVLNAG 75 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH----TCSE-EEECCTTTCHHHHHHHSCCCSEEEECCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHh----cCCc-EEEcchHHHHHHHHHHhCCCcEEEeccc
Confidence 68999999998 99999999999999995 9999999876543 2321 111111 234455678899999877
Q ss_pred CC
Q 010322 319 SE 320 (513)
Q Consensus 319 s~ 320 (513)
.+
T Consensus 76 ~~ 77 (234)
T d1o5ia_ 76 GP 77 (234)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=97.11 E-value=0.00045 Score=64.97 Aligned_cols=77 Identities=8% Similarity=0.146 Sum_probs=57.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-ceeec--cc---chHH-------hhcC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-EIIYK--PL---SEML-------SCAA 308 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-~~~~~--~~---~~~~-------~~l~ 308 (513)
.+.||+++|.|+ ++||+++++.|...|++ |++++|+.+++++++++++.. .+.+. +. ++.. +...
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAK-VMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFG 81 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 378999999998 99999999999999995 999999999998888887521 11111 11 1222 2245
Q ss_pred CCcEEEEcCCCC
Q 010322 309 DADVVFTSTASE 320 (513)
Q Consensus 309 ~aDVVI~AT~s~ 320 (513)
..|++|++.+..
T Consensus 82 ~iDiLVnnAg~~ 93 (251)
T d1zk4a1 82 PVSTLVNNAGIA 93 (251)
T ss_dssp SCCEEEECCCCC
T ss_pred CceEEEeccccc
Confidence 789999987664
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.00036 Score=65.45 Aligned_cols=78 Identities=10% Similarity=0.140 Sum_probs=57.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc------chHHhhcCCCcEEEE
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL------SEMLSCAADADVVFT 315 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~------~~~~~~l~~aDVVI~ 315 (513)
.+.||+++|.|+ |+||+++++.|...|+ +|++++|++++++++.+..+. .....+. +...+.+...|++|+
T Consensus 3 ~l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~id~lVn 80 (245)
T d2ag5a1 3 RLDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGI-QTRVLDVTKKKQIDQFANEVERLDVLFN 80 (245)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTE-EEEECCTTCHHHHHHHHHHCSCCSEEEE
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhccCC-ceeeeeccccccccccccccccceeEEe
Confidence 478999999998 9999999999999998 599999999988777665442 1122221 112233568899999
Q ss_pred cCCCCcc
Q 010322 316 STASEAP 322 (513)
Q Consensus 316 AT~s~~~ 322 (513)
+.+...+
T Consensus 81 ~ag~~~~ 87 (245)
T d2ag5a1 81 VAGFVHH 87 (245)
T ss_dssp CCCCCCC
T ss_pred cccccCC
Confidence 9877543
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=97.10 E-value=0.00066 Score=64.09 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=55.9
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc--ceeec--c---cchHH-------hhcC
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV--EIIYK--P---LSEML-------SCAA 308 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~--~~~~~--~---~~~~~-------~~l~ 308 (513)
+.||.++|.|+ ++||+++++.|...|++ |++++|+.++++++++++... .+... + .+++. +...
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEGTA-IALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFG 81 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 68999999999 89999999999999995 999999999988887766321 11111 1 11222 2235
Q ss_pred CCcEEEEcCCCC
Q 010322 309 DADVVFTSTASE 320 (513)
Q Consensus 309 ~aDVVI~AT~s~ 320 (513)
..|++|++.+..
T Consensus 82 ~iDilVnnaG~~ 93 (260)
T d1zema1 82 KIDFLFNNAGYQ 93 (260)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCeehhhhccc
Confidence 789999987754
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=97.10 E-value=0.0015 Score=60.69 Aligned_cols=95 Identities=16% Similarity=0.187 Sum_probs=71.3
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.++.|++|+|-|.|.+|..++++|...|++ |++++.+..+...+....+. ...+.+++.. ..|||++-|...
T Consensus 35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gak-vv~~d~~~~~~~~~~~~~g~---~~~~~~~~~~--~~cDIl~PcA~~-- 106 (230)
T d1leha1 35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAK-LVVTDVNKAAVSAAVAEEGA---DAVAPNAIYG--VTCDIFAPCALG-- 106 (230)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHHCC---EECCGGGTTT--CCCSEEEECSCS--
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEeecccHHHHHHHHHhcCC---cccCCccccc--ccccEecccccc--
Confidence 578999999999999999999999999995 88999999988888777764 3333333322 479999998664
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEecc-CCC
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDIS-VPR 352 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDla-vPr 352 (513)
..|+.+.+..+. -.+++.-+ .|.
T Consensus 107 ~~I~~~~~~~l~--------ak~Ive~ANn~~ 130 (230)
T d1leha1 107 AVLNDFTIPQLK--------AKVIAGSADNQL 130 (230)
T ss_dssp CCBSTTHHHHCC--------CSEECCSCSCCB
T ss_pred cccChHHhhccC--------ccEEEecccCCC
Confidence 345666665542 25777777 443
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=97.07 E-value=0.0013 Score=62.83 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=56.7
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh----CCcceeec--cc---chH-------H
Q 010322 242 SSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL----NGVEIIYK--PL---SEM-------L 304 (513)
Q Consensus 242 ~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~----g~~~~~~~--~~---~~~-------~ 304 (513)
.+++||+++|.|+ |+||+++++.|...|++ |++++|+.+++++.++++ +.. .... +. ++. .
T Consensus 21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~-Vii~~r~~~~l~~~~~~l~~~~g~~-~~~~~~D~~~~~~v~~~~~~~~ 98 (294)
T d1w6ua_ 21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQ-CVIASRKMDVLKATAEQISSQTGNK-VHAIQCDVRDPDMVQNTVSELI 98 (294)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHSSC-EEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhcCCc-eEEEEecccChHHHHHHhhhhh
Confidence 4789999999997 99999999999999984 999999998876666544 321 1111 11 121 1
Q ss_pred hhcCCCcEEEEcCCCCc
Q 010322 305 SCAADADVVFTSTASEA 321 (513)
Q Consensus 305 ~~l~~aDVVI~AT~s~~ 321 (513)
+.....|++|++.+...
T Consensus 99 ~~~g~iDilvnnAg~~~ 115 (294)
T d1w6ua_ 99 KVAGHPNIVINNAAGNF 115 (294)
T ss_dssp HHTCSCSEEEECCCCCC
T ss_pred hhccccchhhhhhhhcc
Confidence 22457899999987654
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.0012 Score=58.28 Aligned_cols=92 Identities=22% Similarity=0.368 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEcccH-HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHh
Q 010322 227 VSSAAVELALMKLPESSHATARMLVIGAGK-MGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLS 305 (513)
Q Consensus 227 va~~Av~la~~~~~~~~l~g~~VlVIGaG~-mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~ 305 (513)
++.+.+++.+. .+ .++.|++|+|||-+. +|+-++..|...|++ |++++.... ++.+
T Consensus 20 Tp~aI~~lL~~-y~-i~l~GK~v~VIGrS~~VG~Pla~lL~~~gat-Vt~~h~~t~--------------------~l~~ 76 (166)
T d1b0aa1 20 TPRGIVTLLER-YN-IDTFGLNAVVIGASNIVGRPMSMELLLAGCT-TTVTHRFTK--------------------NLRH 76 (166)
T ss_dssp HHHHHHHHHHH-TT-CCCTTCEEEEECCCTTTHHHHHHHHHTTTCE-EEEECSSCS--------------------CHHH
T ss_pred hHHHHHHHHHH-cC-cccccceEEEEeccccccHHHHHHHHHhhcc-ccccccccc--------------------hhHH
Confidence 33444566554 33 578999999999966 999999999999985 888875421 2233
Q ss_pred hcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 306 CAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
.+..||+||+|+|.|+. ++.++++. + .++||.++.+
T Consensus 77 ~~~~ADivI~a~G~p~~-i~~~~vk~---------g-~vvIDvGi~~ 112 (166)
T d1b0aa1 77 HVENADLLIVAVGKPGF-IPGDWIKE---------G-AIVIDVGINR 112 (166)
T ss_dssp HHHHCSEEEECSCCTTC-BCTTTSCT---------T-CEEEECCCEE
T ss_pred HHhhhhHhhhhccCccc-ccccccCC---------C-cEEEecCcee
Confidence 34679999999999865 56676632 2 6899988654
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.03 E-value=0.00051 Score=64.79 Aligned_cols=78 Identities=14% Similarity=0.256 Sum_probs=57.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc--ceeec--c---cchHH-------hhc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV--EIIYK--P---LSEML-------SCA 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~--~~~~~--~---~~~~~-------~~l 307 (513)
.+.||+++|.|+ ++||+++++.|...|++ |++++|+.++++++++++... ..... + .++.. +..
T Consensus 8 ~L~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~ 86 (255)
T d1fmca_ 8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 478999999999 89999999999999995 999999999988887766311 11111 1 11222 223
Q ss_pred CCCcEEEEcCCCCc
Q 010322 308 ADADVVFTSTASEA 321 (513)
Q Consensus 308 ~~aDVVI~AT~s~~ 321 (513)
...|++|++.+...
T Consensus 87 g~iDilvnnAG~~~ 100 (255)
T d1fmca_ 87 GKVDILVNNAGGGG 100 (255)
T ss_dssp SSCCEEEECCCCCC
T ss_pred CCCCEeeeCCcCCC
Confidence 57999999987654
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=97.03 E-value=0.001 Score=62.35 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=55.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec--ccchHH-------hhcCCCcE
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK--PLSEML-------SCAADADV 312 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~--~~~~~~-------~~l~~aDV 312 (513)
-+.||+++|.|+ ++||+.+++.|...|+ +|.+++|+.+.. ++++.++...+..+ ..++.. +.....|+
T Consensus 2 ~l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~-~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDi 79 (248)
T d2d1ya1 2 LFAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGK-EVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDV 79 (248)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHH-HHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCe
Confidence 468999999997 9999999999999999 499999997765 66777764222221 112222 22357899
Q ss_pred EEEcCCCC
Q 010322 313 VFTSTASE 320 (513)
Q Consensus 313 VI~AT~s~ 320 (513)
+|++.+..
T Consensus 80 LVnnAG~~ 87 (248)
T d2d1ya1 80 LVNNAAIA 87 (248)
T ss_dssp EEECCCCC
T ss_pred EEEeCcCC
Confidence 99987654
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=97.03 E-value=0.00046 Score=60.38 Aligned_cols=89 Identities=24% Similarity=0.307 Sum_probs=61.7
Q ss_pred eEEEEcccHHHHH-HHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccCCC
Q 010322 248 RMLVIGAGKMGKL-VIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFL 325 (513)
Q Consensus 248 ~VlVIGaG~mG~~-ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~vi~ 325 (513)
+|+|||+|.+|.- .+..+... +++-+.|++++++++..+++.++. . .+++..+.+.+.|+|+.||+.....
T Consensus 3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~---~--~~~~~~~l~~~~D~V~I~tp~~~h~-- 75 (164)
T d1tlta1 3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRI---P--YADSLSSLAASCDAVFVHSSTASHF-- 75 (164)
T ss_dssp EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTC---C--BCSSHHHHHTTCSEEEECSCTTHHH--
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccc---c--ccccchhhhhhcccccccccchhcc--
Confidence 7999999999975 56667654 666567899999999999998863 2 2344445567899999999876542
Q ss_pred hhhhhcCCchhhhcCCcEEEEecc
Q 010322 326 KDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 326 ~~~l~~~~~~~~~~~g~~viiDla 349 (513)
+....+. ..|..++++=+
T Consensus 76 -~~~~~al-----~~gk~V~~EKP 93 (164)
T d1tlta1 76 -DVVSTLL-----NAGVHVCVDKP 93 (164)
T ss_dssp -HHHHHHH-----HTTCEEEEESS
T ss_pred -ccccccc-----cccceeecccc
Confidence 2222211 13457888843
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=97.03 E-value=0.0009 Score=63.14 Aligned_cols=77 Identities=12% Similarity=0.180 Sum_probs=56.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc--ceeec--c---cchHH-------hhc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV--EIIYK--P---LSEML-------SCA 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~--~~~~~--~---~~~~~-------~~l 307 (513)
++.||+++|.|+ ++||+++++.|...|++ |++++|+.++++++.+++... ..... + .++.. +..
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGAS-VYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHF 83 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence 689999999999 89999999999999995 999999999998887776311 11111 1 12221 123
Q ss_pred C-CCcEEEEcCCCC
Q 010322 308 A-DADVVFTSTASE 320 (513)
Q Consensus 308 ~-~aDVVI~AT~s~ 320 (513)
. ..|++|++.+..
T Consensus 84 ~~~idilvnnAG~~ 97 (259)
T d2ae2a_ 84 HGKLNILVNNAGIV 97 (259)
T ss_dssp TTCCCEEEECCCCC
T ss_pred CCCceEEEECCcee
Confidence 3 589999987754
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=97.02 E-value=0.00068 Score=60.72 Aligned_cols=37 Identities=19% Similarity=0.352 Sum_probs=33.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
...+++|+|||+|+.|..+|..|..+|. +|+++++++
T Consensus 40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~ 76 (179)
T d1ps9a3 40 AVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHS 76 (179)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred CCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccC
Confidence 3468999999999999999999999998 599999864
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.01 E-value=0.00079 Score=63.25 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=56.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc--ceeec--c---cchHH-------hhc
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV--EIIYK--P---LSEML-------SCA 307 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~--~~~~~--~---~~~~~-------~~l 307 (513)
++.+|.++|.|+ ++||+.+++.|...|+ +|++++|+.++++++++++... ..... + .+++. +..
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 85 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH 85 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 578999999999 8999999999999998 5999999999998888776321 11111 1 11221 224
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|++|++.+..
T Consensus 86 g~iDilvnnag~~ 98 (251)
T d2c07a1 86 KNVDILVNNAGIT 98 (251)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCceeeeeccccc
Confidence 5789999876653
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=96.99 E-value=0.0022 Score=57.20 Aligned_cols=94 Identities=15% Similarity=0.185 Sum_probs=59.1
Q ss_pred CCCCeEEEE--cccHHHHHHHHHHHHcCCCeEEEEeCCHHHH---HHHHHHhCCcceeecccc-----h----HHhh---
Q 010322 244 HATARMLVI--GAGKMGKLVIKHLVAKGCTKMVVVNRSEERV---AAICEELNGVEIIYKPLS-----E----MLSC--- 306 (513)
Q Consensus 244 l~g~~VlVI--GaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra---~~la~~~g~~~~~~~~~~-----~----~~~~--- 306 (513)
.+|.+|+|+ |+|.+|.++++.++..|++ |+.+.|+.+.. .++.+++|... .+ +++ + ..+.
T Consensus 27 ~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~-vI~~v~~~~~~~~~~~~~~~lGad~-vi-~~~~~~~~~~~~~v~~~~~~ 103 (189)
T d1gu7a2 27 TPGKDWFIQNGGTSAVGKYASQIGKLLNFN-SISVIRDRPNLDEVVASLKELGATQ-VI-TEDQNNSREFGPTIKEWIKQ 103 (189)
T ss_dssp CTTTCEEEESCTTSHHHHHHHHHHHHHTCE-EEEEECCCTTHHHHHHHHHHHTCSE-EE-EHHHHHCGGGHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHhhcCCe-EEEEEecccccchHHhhhhhccccE-EE-eccccchhHHHHHHHHHHhh
Confidence 468899998 5699999999999999996 54444443322 24556777532 22 221 1 1111
Q ss_pred -cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 307 -AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 307 -l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
-.++|+||+|++.+.. ...++.+. ++|+.+.++.
T Consensus 104 ~g~~vdvv~D~vg~~~~---~~~~~~l~-----~~G~~v~~G~ 138 (189)
T d1gu7a2 104 SGGEAKLALNCVGGKSS---TGIARKLN-----NNGLMLTYGG 138 (189)
T ss_dssp HTCCEEEEEESSCHHHH---HHHHHTSC-----TTCEEEECCC
T ss_pred ccCCceEEEECCCcchh---hhhhhhhc-----CCcEEEEECC
Confidence 2469999999986533 34555543 4677777763
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.00059 Score=64.37 Aligned_cols=77 Identities=25% Similarity=0.362 Sum_probs=57.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc----ceee--ccc---chHH-------h
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV----EIIY--KPL---SEML-------S 305 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~----~~~~--~~~---~~~~-------~ 305 (513)
.++||.|+|.|+ ++||.++++.|...|+ +|++++|+.++++++++++... .+.. .+. +++. +
T Consensus 7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~ 85 (257)
T d1xg5a_ 7 RWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS 85 (257)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 478999999999 9999999999999999 4999999999998888776311 1111 111 2222 2
Q ss_pred hcCCCcEEEEcCCCC
Q 010322 306 CAADADVVFTSTASE 320 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~ 320 (513)
.....|++|++.+..
T Consensus 86 ~~g~iD~lVnnAg~~ 100 (257)
T d1xg5a_ 86 QHSGVDICINNAGLA 100 (257)
T ss_dssp HHCCCSEEEECCCCC
T ss_pred hcCCCCEEEeccccc
Confidence 245789999987764
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.97 E-value=0.0011 Score=62.96 Aligned_cols=78 Identities=12% Similarity=0.196 Sum_probs=57.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc-----ceeec--c---cchHH-------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV-----EIIYK--P---LSEML------- 304 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~-----~~~~~--~---~~~~~------- 304 (513)
.+.||+++|.|+ ++||+++++.|...|+ +|++++|+.++++++++++... .+... + .++..
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 80 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 80 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHH
Confidence 368999999999 9999999999999999 5999999999988887765211 11111 1 11222
Q ss_pred hhcCCCcEEEEcCCCCc
Q 010322 305 SCAADADVVFTSTASEA 321 (513)
Q Consensus 305 ~~l~~aDVVI~AT~s~~ 321 (513)
+.....|++|++.+...
T Consensus 81 ~~~g~iDilvnnAG~~~ 97 (272)
T d1xkqa_ 81 KQFGKIDVLVNNAGAAI 97 (272)
T ss_dssp HHHSCCCEEEECCCCCC
T ss_pred HHhCCceEEEeCCcccC
Confidence 22357899999977643
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.00068 Score=60.53 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=63.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccch--HHhhc--CCCcEEEEcCCC
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSE--MLSCA--ADADVVFTSTAS 319 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~--~~~~l--~~aDVVI~AT~s 319 (513)
.+.+|+|.|+ |++|..+++.++..|++ |+.+.+++++. ++++++|.. .+..+++ ..+.+ ...|.||++.+.
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~-Via~~~~~~k~-~~~~~lGad--~vi~~~~~~~~~~l~~~~~~~vvD~Vgg 106 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQ-VVAVSGRESTH-EYLKSLGAS--RVLPRDEFAESRPLEKQVWAGAIDTVGD 106 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCGGGH-HHHHHHTEE--EEEEGGGSSSCCSSCCCCEEEEEESSCH
T ss_pred CCCcEEEEEccccchHHHHHHHHHcCCC-eEEEecchhHH-HHHHhhccc--cccccccHHHHHHHHhhcCCeeEEEcch
Confidence 4568999988 99999999999999996 78889998887 566778753 2223322 12222 346999999886
Q ss_pred CccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 320 EAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 320 ~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+.. ...+..+. ++|+.+.++.
T Consensus 107 ~~~---~~~l~~l~-----~~Griv~~G~ 127 (177)
T d1o89a2 107 KVL---AKVLAQMN-----YGGCVAACGL 127 (177)
T ss_dssp HHH---HHHHHTEE-----EEEEEEECCC
T ss_pred HHH---HHHHHHhc-----cccceEeecc
Confidence 532 34454432 3576777764
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=0.00065 Score=65.57 Aligned_cols=48 Identities=27% Similarity=0.462 Sum_probs=43.0
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh
Q 010322 242 SSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL 290 (513)
Q Consensus 242 ~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~ 290 (513)
+-+.||.++|.|+ ++||+++++.|...|++ |++++|+.+++++.++++
T Consensus 8 g~L~gKvalITGas~GIG~aia~~la~~Ga~-Vvi~~r~~~~l~~~~~el 56 (297)
T d1yxma1 8 GLLQGQVAIVTGGATGIGKAIVKELLELGSN-VVIASRKLERLKSAADEL 56 (297)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHH
Confidence 4579999999999 89999999999999995 999999999887777665
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.94 E-value=0.00065 Score=64.21 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=43.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN 291 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g 291 (513)
+++||+++|.|+ ++||+.+++.|...|+ +|++++|+.+++++.++++.
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~ 53 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQ 53 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHH
Confidence 689999999999 9999999999999999 59999999999888877763
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.91 E-value=0.00064 Score=64.73 Aligned_cols=76 Identities=12% Similarity=0.218 Sum_probs=55.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC---Cc--ceeec--c---cchHHh-------
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN---GV--EIIYK--P---LSEMLS------- 305 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g---~~--~~~~~--~---~~~~~~------- 305 (513)
+.||+++|.|+ ++||+++++.|...|++ |++++|+.++++++++++. .. .+... + .+++.+
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQ-VTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 57999999999 89999999999999995 9999999999888777652 10 11111 1 122222
Q ss_pred hcCCCcEEEEcCCCC
Q 010322 306 CAADADVVFTSTASE 320 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~ 320 (513)
.....|++|++.+..
T Consensus 81 ~~G~iDilVnnAG~~ 95 (274)
T d1xhla_ 81 KFGKIDILVNNAGAN 95 (274)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HcCCceEEEeecccc
Confidence 235789999997753
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.91 E-value=0.0011 Score=57.32 Aligned_cols=75 Identities=20% Similarity=0.379 Sum_probs=50.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCC-CeEEEEeCCH--HHHHHHHHHhC----Cc--ceeec-ccchHHhhcCCCcEEEE
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGC-TKMVVVNRSE--ERVAAICEELN----GV--EIIYK-PLSEMLSCAADADVVFT 315 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~-~~V~v~nRs~--~ra~~la~~~g----~~--~~~~~-~~~~~~~~l~~aDVVI~ 315 (513)
.+|.|||| |.+|..++..|...|. .++.++|+++ .+++.++..+. .. ...+. ...+..+.+.++||||-
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence 37999996 9999999999998884 7899999875 34443433332 11 11111 11223456889999999
Q ss_pred cCCCCc
Q 010322 316 STASEA 321 (513)
Q Consensus 316 AT~s~~ 321 (513)
+.|.+.
T Consensus 81 tAG~~~ 86 (145)
T d1hyea1 81 TSGVPR 86 (145)
T ss_dssp CCSCCC
T ss_pred eccccc
Confidence 988753
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.90 E-value=0.00071 Score=60.20 Aligned_cols=74 Identities=20% Similarity=0.188 Sum_probs=54.2
Q ss_pred eEEEEcccHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhc--CCCcEEEEcCCCCcc
Q 010322 248 RMLVIGAGKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCA--ADADVVFTSTASEAP 322 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l--~~aDVVI~AT~s~~~ 322 (513)
+|+|||+|.+|+..+..+... +++-+.+++++++++..++++++... ....+++..+.+ .+.|+|+-||+....
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~iD~v~I~tp~~~h 79 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPE-STKIHGSYESLLEDPEIDALYVPLPTSLH 79 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCT-TCEEESSHHHHHHCTTCCEEEECCCGGGH
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhcccccc-ceeecCcHHHhhhccccceeeecccchhh
Confidence 799999999999999999876 55444478999999999999886311 111234444433 478999999988654
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.0013 Score=61.65 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=56.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC----cceeec--c---cchHH-------hhc
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG----VEIIYK--P---LSEML-------SCA 307 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~----~~~~~~--~---~~~~~-------~~l 307 (513)
.||.++|.|+ ++||+++++.|...|++ |.+++|+.++.++.+.++.. ..+... + .+++. +..
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAK-VALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 5899999999 99999999999999995 99999999998887776632 111111 1 12222 223
Q ss_pred CCCcEEEEcCCCCcc
Q 010322 308 ADADVVFTSTASEAP 322 (513)
Q Consensus 308 ~~aDVVI~AT~s~~~ 322 (513)
...|++|++.+...+
T Consensus 81 G~iDilVnnAg~~~~ 95 (254)
T d2gdza1 81 GRLDILVNNAGVNNE 95 (254)
T ss_dssp SCCCEEEECCCCCCS
T ss_pred CCcCeeccccccccc
Confidence 579999999887643
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=96.82 E-value=0.00051 Score=60.29 Aligned_cols=95 Identities=20% Similarity=0.252 Sum_probs=56.9
Q ss_pred CeEEEEcccHHHHH-HHHHHHHcCCCe-EEEEeCCHH-HHHHHHHHhCCcceeecccchHHhh--cCCCcEEEEcCCCCc
Q 010322 247 ARMLVIGAGKMGKL-VIKHLVAKGCTK-MVVVNRSEE-RVAAICEELNGVEIIYKPLSEMLSC--AADADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGaG~mG~~-ia~~L~~~G~~~-V~v~nRs~~-ra~~la~~~g~~~~~~~~~~~~~~~--l~~aDVVI~AT~s~~ 321 (513)
-+|.|||+|.+|.. +.+.|.....-+ +.+++|+.+ +...++++++. .......+++.+. ..+.|+||.||+++.
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i-~~~~~~~d~l~~~~~~~~iDiVf~ATpag~ 83 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGV-TTTYAGVEGLIKLPEFADIDFVFDATSASA 83 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTC-CEESSHHHHHHHSGGGGGEEEEEECSCHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCC-cccccceeeeeecccccccCEEEEcCCchh
Confidence 47999999999985 567776654433 456788765 44567888763 1222222333322 347899999999865
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
..-....++.+ .....+||.+
T Consensus 84 h~~~~~~~~aa-------~~G~~VID~s 104 (157)
T d1nvmb1 84 HVQNEALLRQA-------KPGIRLIDLT 104 (157)
T ss_dssp HHHHHHHHHHH-------CTTCEEEECS
T ss_pred HHHhHHHHHHH-------HcCCEEEEcc
Confidence 43111111111 1227789986
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.82 E-value=0.0015 Score=61.40 Aligned_cols=76 Identities=22% Similarity=0.289 Sum_probs=54.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc--ceeec-----ccchHH-------hhcCC
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV--EIIYK-----PLSEML-------SCAAD 309 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~--~~~~~-----~~~~~~-------~~l~~ 309 (513)
+||.++|.|+ ++||+++++.|...|++ |++++|+.++++++++++... .+... ..++.. +....
T Consensus 1 DgKValITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKEGLR-VFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGP 79 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 3677788898 89999999999999995 999999999988887765311 11111 112222 22457
Q ss_pred CcEEEEcCCCCc
Q 010322 310 ADVVFTSTASEA 321 (513)
Q Consensus 310 aDVVI~AT~s~~ 321 (513)
.|++|++.|...
T Consensus 80 iDilVnnAG~~~ 91 (257)
T d2rhca1 80 VDVLVNNAGRPG 91 (257)
T ss_dssp CSEEEECCCCCC
T ss_pred CCEEEecccccC
Confidence 899999987653
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=96.82 E-value=0.00062 Score=64.19 Aligned_cols=76 Identities=13% Similarity=0.171 Sum_probs=53.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh----CCcceeec-----ccchHH-------h
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL----NGVEIIYK-----PLSEML-------S 305 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~----g~~~~~~~-----~~~~~~-------~ 305 (513)
++.||+++|.|+ ++||+.+++.|...|++ |++++|+.+++.+.++++ +.. +... ..+++. +
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~~~~~~g~~-~~~~~~Dv~~~~~v~~~~~~~~~ 83 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGAN-VAVIYRSAADAVEVTEKVGKEFGVK-TKAYQCDVSNTDIVTKTIQQIDA 83 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCTTHHHHHHHHHHHHTCC-EEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHHhCCc-eEEEEccCCCHHHHHHHHHHHHH
Confidence 678999999999 88999999999999994 999999987766555443 421 1111 111221 2
Q ss_pred hcCCCcEEEEcCCCC
Q 010322 306 CAADADVVFTSTASE 320 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~ 320 (513)
.....|++|++.+..
T Consensus 84 ~~g~iDilVnnAg~~ 98 (260)
T d1h5qa_ 84 DLGPISGLIANAGVS 98 (260)
T ss_dssp HSCSEEEEEECCCCC
T ss_pred HhCCCcEeccccccc
Confidence 245789999987653
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=96.82 E-value=0.0023 Score=60.26 Aligned_cols=75 Identities=17% Similarity=0.265 Sum_probs=54.1
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh----CCcceeec--c---cchHH-------hh
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL----NGVEIIYK--P---LSEML-------SC 306 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~----g~~~~~~~--~---~~~~~-------~~ 306 (513)
+.||+++|.|+ ++||+++++.|...|++ |.+++|+.+++++..+++ ++..+... + .++.. +.
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGAK-LSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 57999999999 89999999999999995 999999999887666554 11111111 1 12222 22
Q ss_pred cCCCcEEEEcCCC
Q 010322 307 AADADVVFTSTAS 319 (513)
Q Consensus 307 l~~aDVVI~AT~s 319 (513)
....|++|++.|.
T Consensus 81 ~G~iDiLVnnAG~ 93 (258)
T d1iy8a_ 81 FGRIDGFFNNAGI 93 (258)
T ss_dssp HSCCSEEEECCCC
T ss_pred hCCCCEEEECCcc
Confidence 3578999998774
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.81 E-value=0.0007 Score=63.97 Aligned_cols=76 Identities=11% Similarity=0.175 Sum_probs=54.8
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC---C--cceeec--c---cchHH-------h
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN---G--VEIIYK--P---LSEML-------S 305 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g---~--~~~~~~--~---~~~~~-------~ 305 (513)
+.||.++|.|+ ++||+++++.|...|++ |++++|+.++++++++++. . ..+... + .++.. +
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGAK-VTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 68999999998 99999999999999995 9999999999888877652 1 011111 1 12222 2
Q ss_pred hcCCCcEEEEcCCCC
Q 010322 306 CAADADVVFTSTASE 320 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~ 320 (513)
.....|++|++.+..
T Consensus 82 ~~g~iDilvnnAG~~ 96 (264)
T d1spxa_ 82 KFGKLDILVNNAGAA 96 (264)
T ss_dssp HHSCCCEEEECCC--
T ss_pred HhCCCCEeecccccc
Confidence 235789999998753
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.73 E-value=0.00072 Score=60.70 Aligned_cols=75 Identities=20% Similarity=0.146 Sum_probs=50.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCT-KMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~-~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
-++|||.|+ |.+|+.+++.|...|.. .|+...|++.+...+..............++..+++.++|.||.+.+..
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~~ 79 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAV 79 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEeec
Confidence 378999997 99999999999999964 4556778887664432211100011222345566788999999987654
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.72 E-value=0.001 Score=59.01 Aligned_cols=70 Identities=26% Similarity=0.253 Sum_probs=55.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCC
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~ 320 (513)
+.+++|.|||.|..|.+.+.+|+..|+ +|+|-.|...+..+.|++-|. .+. ++.++.+.+|+|...++..
T Consensus 14 ik~k~IaViGYGsQG~AhAlNLrDSG~-~V~VGLr~gs~s~~~A~~~Gf---~v~---~~~eA~~~aDiim~L~PD~ 83 (182)
T d1np3a2 14 IQGKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSGSATVAKAEAHGL---KVA---DVKTAVAAADVVMILTPDE 83 (182)
T ss_dssp HHTSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTTCHHHHHHHHTTC---EEE---CHHHHHHTCSEEEECSCHH
T ss_pred HCCCEEEEEeeCcHhHHHHhhhhhcCC-CEEEEcCCCCccHHHHhhhcc---ccc---cHHHHhhhcCeeeeecchH
Confidence 468999999999999999999999999 599988876555566666442 332 4556677999999998864
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=96.68 E-value=0.0015 Score=61.72 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=53.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCH-HHHHHHHHHh---CCcceee-----cccchHHh-------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSE-ERVAAICEEL---NGVEIIY-----KPLSEMLS------- 305 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~-~ra~~la~~~---g~~~~~~-----~~~~~~~~------- 305 (513)
+++||.++|.|+ ++||+.+++.|...|++ |.+++|+. +.++.+++++ +. .+.. ...++..+
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G~~-Vv~~~r~~~~~~~~~~~~~~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAK-VVVNYRSKEDEANSVLEEIKKVGG-EAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCcHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHH
Confidence 689999999998 99999999999999995 99999875 4555555544 32 1111 11122222
Q ss_pred hcCCCcEEEEcCCCCc
Q 010322 306 CAADADVVFTSTASEA 321 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~ 321 (513)
.....|++|++.+...
T Consensus 82 ~~G~iDiLVnnAG~~~ 97 (261)
T d1geea_ 82 EFGKLDVMINNAGLEN 97 (261)
T ss_dssp HHSCCCEEEECCCCCC
T ss_pred HhCCCCEeeccceecC
Confidence 2357899999987654
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.67 E-value=0.00061 Score=60.20 Aligned_cols=35 Identities=20% Similarity=0.428 Sum_probs=32.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
+++|+|||+|+.|..+|.+|..+|+++|+|+.|++
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~ 38 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQE 38 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecC
Confidence 68999999999999999999999997799999864
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.66 E-value=0.0017 Score=58.80 Aligned_cols=74 Identities=19% Similarity=0.316 Sum_probs=54.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc--------------ceeecccchHHhhcCCCcE
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV--------------EIIYKPLSEMLSCAADADV 312 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~--------------~~~~~~~~~~~~~l~~aDV 312 (513)
++|.|||+|-+|..+|..|+..|. +|+++|.+.++.+.+.+..-.. ........+..+++..+|+
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~ 79 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDV 79 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSE
T ss_pred CEEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCE
Confidence 479999999999999999999998 5999999998876654311000 0011122445666778999
Q ss_pred EEEcCCCCc
Q 010322 313 VFTSTASEA 321 (513)
Q Consensus 313 VI~AT~s~~ 321 (513)
+|-|++.|.
T Consensus 80 i~i~VpTP~ 88 (202)
T d1mv8a2 80 SFICVGTPS 88 (202)
T ss_dssp EEECCCCCB
T ss_pred EEEecCccc
Confidence 999998874
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=96.64 E-value=0.0012 Score=60.77 Aligned_cols=76 Identities=13% Similarity=0.112 Sum_probs=53.6
Q ss_pred CeEEEEcccHHHHH-HHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhc--CCCcEEEEcCCCCcc
Q 010322 247 ARMLVIGAGKMGKL-VIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCA--ADADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGaG~mG~~-ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l--~~aDVVI~AT~s~~~ 322 (513)
-+|.|||+|.+|+. ++..+... +++-+.|++|++++++.++++++.....+..++++.+.+ .+.|+|+.||+....
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~~H 113 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLH 113 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGH
T ss_pred EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchhhh
Confidence 48999999999975 45555544 565556899999999999999863211222344555544 368999999988654
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=96.63 E-value=0.0035 Score=55.45 Aligned_cols=90 Identities=12% Similarity=0.167 Sum_probs=60.0
Q ss_pred CeEEEEcccHHHHH-HHHHHHHcCC--CeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhc--CCCcEEEEcCCCCc
Q 010322 247 ARMLVIGAGKMGKL-VIKHLVAKGC--TKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCA--ADADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGaG~mG~~-ia~~L~~~G~--~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l--~~aDVVI~AT~s~~ 321 (513)
-+|+|||+|.+|+. .+..+...+- +-+.++++++++++.+++.++.. ..+ ++..+.+ .+.|+|+-||+...
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~-~~~---~~~~ell~~~~id~v~I~tp~~~ 79 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNP-AVF---DSYEELLESGLVDAVDLTLPVEL 79 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSC-EEE---SCHHHHHHSSCCSEEEECCCGGG
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccccc-cee---eeeeccccccccceeeccccccc
Confidence 47999999999986 6777776543 33448999999999999998742 122 3444433 46899999998764
Q ss_pred cCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 322 PLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 322 ~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
.. +.+..+. ..|.-++++=
T Consensus 80 h~---~~~~~al-----~~gk~V~~EK 98 (181)
T d1zh8a1 80 NL---PFIEKAL-----RKGVHVICEK 98 (181)
T ss_dssp HH---HHHHHHH-----HTTCEEEEES
T ss_pred cc---ccccccc-----ccchhhhcCC
Confidence 32 2222222 1355788874
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.54 E-value=0.0026 Score=59.60 Aligned_cols=71 Identities=20% Similarity=0.348 Sum_probs=50.3
Q ss_pred EEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc--ceeec--c---cchHH-------hhcCCCcEE
Q 010322 249 MLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV--EIIYK--P---LSEML-------SCAADADVV 313 (513)
Q Consensus 249 VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~--~~~~~--~---~~~~~-------~~l~~aDVV 313 (513)
++|.|+ ++||+++++.|...|++ |.+++|+.++++++++++... .+... + .++.. +.....|++
T Consensus 4 alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil 82 (255)
T d1gega_ 4 ALVTGAGQGIGKAIALRLVKDGFA-VAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVI 82 (255)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCEE
T ss_pred EEEcCCccHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccEE
Confidence 477788 89999999999999994 999999999998887765311 11111 1 11222 224589999
Q ss_pred EEcCCCC
Q 010322 314 FTSTASE 320 (513)
Q Consensus 314 I~AT~s~ 320 (513)
|++.|..
T Consensus 83 VnnAG~~ 89 (255)
T d1gega_ 83 VNNAGVA 89 (255)
T ss_dssp EECCCCC
T ss_pred Eeccccc
Confidence 9987764
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.002 Score=60.02 Aligned_cols=77 Identities=21% Similarity=0.357 Sum_probs=53.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC--------------H-----HHHHHHHHHhC----Ccceeecc--
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS--------------E-----ERVAAICEELN----GVEIIYKP-- 299 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs--------------~-----~ra~~la~~~g----~~~~~~~~-- 299 (513)
.+++|+|+|+|++|..++..|...|+.+++++|.+ . .|++.+++.+. ...+...+
T Consensus 29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~~ 108 (247)
T d1jw9b_ 29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL 108 (247)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhhh
Confidence 57899999999999999999999999999998853 1 14544444332 21122111
Q ss_pred --cchHHhhcCCCcEEEEcCCCCc
Q 010322 300 --LSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 300 --~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
..+....+...|+||+|+....
T Consensus 109 ~~~~~~~~~~~~~divid~~d~~~ 132 (247)
T d1jw9b_ 109 LDDAELAALIAEHDLVLDCTDNVA 132 (247)
T ss_dssp CCHHHHHHHHHTSSEEEECCSSHH
T ss_pred hhhccccccccccceeeeccchhh
Confidence 1233444678999999997643
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=96.51 E-value=0.0031 Score=58.86 Aligned_cols=76 Identities=9% Similarity=0.219 Sum_probs=53.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHH-HHHHHHHHhCCcceee-----cccchHH-------hhcC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEE-RVAAICEELNGVEIIY-----KPLSEML-------SCAA 308 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~-ra~~la~~~g~~~~~~-----~~~~~~~-------~~l~ 308 (513)
.+.||.++|.|+ ++||+++++.|...|++ |.+++|+.. ..+...+..+.. +.. ...++.. +...
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~-V~~~~~~~~~~~~~~~~~~g~~-~~~~~~Dvs~~~~v~~~~~~~~~~~G 79 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGAD-IAIADLVPAPEAEAAIRNLGRR-VLTVKCDVSQPGDVEAFGKQVISTFG 79 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCHHHHHHHHHTTCC-EEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCchHHHHHHHHHcCCc-EEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 368999999999 89999999999999995 999999753 344555555542 111 1112222 2235
Q ss_pred CCcEEEEcCCCC
Q 010322 309 DADVVFTSTASE 320 (513)
Q Consensus 309 ~aDVVI~AT~s~ 320 (513)
..|++|++.+..
T Consensus 80 ~iDilVnnAG~~ 91 (247)
T d2ew8a1 80 RCDILVNNAGIY 91 (247)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 789999987764
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=96.50 E-value=0.0042 Score=58.22 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=52.7
Q ss_pred CCCCCeEEEEcc-c--HHHHHHHHHHHHcCCCeEEEEeCCH---HHHHHHHHHhCCcceeeccc---ch-------HHhh
Q 010322 243 SHATARMLVIGA-G--KMGKLVIKHLVAKGCTKMVVVNRSE---ERVAAICEELNGVEIIYKPL---SE-------MLSC 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G--~mG~~ia~~L~~~G~~~V~v~nRs~---~ra~~la~~~g~~~~~~~~~---~~-------~~~~ 306 (513)
-++||+++|.|+ | +||.++++.|...|++ |++++|+. ++++++....+...+...+. ++ ..+.
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~-V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 80 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGAT-LAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKD 80 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCE-EEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHH
Confidence 478999999997 5 6999999999999995 99999985 34445555443221111111 11 2233
Q ss_pred cCCCcEEEEcCCCCc
Q 010322 307 AADADVVFTSTASEA 321 (513)
Q Consensus 307 l~~aDVVI~AT~s~~ 321 (513)
....|++|.+.+...
T Consensus 81 ~g~id~lV~nag~~~ 95 (274)
T d2pd4a1 81 LGSLDFIVHSVAFAP 95 (274)
T ss_dssp TSCEEEEEECCCCCC
T ss_pred cCCCCeEEeeccccc
Confidence 468899998877643
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.48 E-value=0.0015 Score=60.70 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=45.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNG 292 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~ 292 (513)
+++||.++|.|+ ++||.++++.|.+.|++ |++++|+.+++++++++++.
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~l~~ 51 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGAS-AVLLDLPNSGGEAQAKKLGN 51 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECTTSSHHHHHHHHCT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHhCC
Confidence 579999999999 89999999999999995 99999999999898888864
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=96.41 E-value=0.078 Score=49.03 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=32.3
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeC
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNR 278 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR 278 (513)
+++.|++|+|-|.|.+|..+++.|...|++-|.+.+.
T Consensus 27 ~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~ 63 (242)
T d1v9la1 27 GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDI 63 (242)
T ss_dssp SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecc
Confidence 5799999999999999999999999999975555554
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=96.38 E-value=0.0045 Score=58.02 Aligned_cols=76 Identities=13% Similarity=0.222 Sum_probs=52.2
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCC-HHHHHHHHHHh----CCcceeec-----ccchHHh-------
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRS-EERVAAICEEL----NGVEIIYK-----PLSEMLS------- 305 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs-~~ra~~la~~~----g~~~~~~~-----~~~~~~~------- 305 (513)
++||.++|.|+ ++||+++++.|...|+ +|++++|+ .+.++++.+++ +. .+.+. ..+++.+
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGV-KVLYDGADLSKGEAVRGLVDNAVR 79 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTS-CEEEECCCTTSHHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHH
Confidence 57899999998 8899999999999999 49999987 45555554433 32 12211 1122222
Q ss_pred hcCCCcEEEEcCCCCc
Q 010322 306 CAADADVVFTSTASEA 321 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~ 321 (513)
.....|++|++.|...
T Consensus 80 ~~G~iDiLVnnAG~~~ 95 (260)
T d1x1ta1 80 QMGRIDILVNNAGIQH 95 (260)
T ss_dssp HHSCCSEEEECCCCCC
T ss_pred HhCCCcEEEeeccccc
Confidence 2357899999987653
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=96.37 E-value=0.0039 Score=55.07 Aligned_cols=76 Identities=18% Similarity=0.305 Sum_probs=52.5
Q ss_pred CCeEEEEcccHHHHHH--HHHHHHc---CCCeEEEEeCCHHHHHHHHHH-------hCCcceeecccchHHhhcCCCcEE
Q 010322 246 TARMLVIGAGKMGKLV--IKHLVAK---GCTKMVVVNRSEERVAAICEE-------LNGVEIIYKPLSEMLSCAADADVV 313 (513)
Q Consensus 246 g~~VlVIGaG~mG~~i--a~~L~~~---G~~~V~v~nRs~~ra~~la~~-------~g~~~~~~~~~~~~~~~l~~aDVV 313 (513)
+.+|.|||+|..|... +..+... ...+|.++|+++++++..+.. ++. ...+....+..+++.++|+|
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~-~~~i~~~td~~eaL~dad~V 80 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGA-DLKFEKTMNLDDVIIDADFV 80 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTC-CCEEEEESCHHHHHTTCSEE
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCC-CeEEEEeCChhhcccCCCeE
Confidence 5789999999988643 3334322 235899999999887543322 221 23444556788889999999
Q ss_pred EEcCCCCcc
Q 010322 314 FTSTASEAP 322 (513)
Q Consensus 314 I~AT~s~~~ 322 (513)
|++.+.+.+
T Consensus 81 v~~~~~g~~ 89 (171)
T d1obba1 81 INTAMVGGH 89 (171)
T ss_dssp EECCCTTHH
T ss_pred eeecccccc
Confidence 999887754
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.33 E-value=0.0035 Score=59.12 Aligned_cols=78 Identities=17% Similarity=0.315 Sum_probs=53.6
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCC-HHHHHHHHHHh---CCcceee--ccc---chH-------H
Q 010322 242 SSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRS-EERVAAICEEL---NGVEIIY--KPL---SEM-------L 304 (513)
Q Consensus 242 ~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs-~~ra~~la~~~---g~~~~~~--~~~---~~~-------~ 304 (513)
.++.||+++|.|+ |+||+++++.|...|++ |++++|+ .+.++++++++ +. .... .+. +++ .
T Consensus 14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~-Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~ 91 (272)
T d1g0oa_ 14 ASLEGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVRMFEEAV 91 (272)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCchHHHHHHHHHHHhhCC-ceeeEeCCCCCHHHHHHHHHHHH
Confidence 3689999999998 99999999999999995 8887765 55666665544 22 1111 111 122 2
Q ss_pred hhcCCCcEEEEcCCCCc
Q 010322 305 SCAADADVVFTSTASEA 321 (513)
Q Consensus 305 ~~l~~aDVVI~AT~s~~ 321 (513)
+.....|++|++.+...
T Consensus 92 ~~~g~idilV~nag~~~ 108 (272)
T d1g0oa_ 92 KIFGKLDIVCSNSGVVS 108 (272)
T ss_dssp HHHSCCCEEEECCCCCC
T ss_pred HHhCCCCccccccccch
Confidence 23457899999987653
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.0055 Score=52.67 Aligned_cols=73 Identities=18% Similarity=0.258 Sum_probs=48.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhCCc----ceeecccchHHhhcCCCcEEEEcCCC
Q 010322 247 ARMLVIG-AGKMGKLVIKHLVAK-G-CTKMVVVNRSEERVAAICEELNGV----EIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 247 ~~VlVIG-aG~mG~~ia~~L~~~-G-~~~V~v~nRs~~ra~~la~~~g~~----~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
.+|.||| +|.+|..++..|... + +.++.++|..+ .++..+..+... ........+..+.+.++|+||.+.|.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~ 79 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCc
Confidence 4799999 599999999887653 4 46899999864 444444444321 11111223334567899999999887
Q ss_pred C
Q 010322 320 E 320 (513)
Q Consensus 320 ~ 320 (513)
+
T Consensus 80 ~ 80 (145)
T d2cmda1 80 R 80 (145)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.30 E-value=0.0044 Score=51.42 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=31.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
.+++|+|||+|.+|..+|..|...|. +|+++.+++
T Consensus 29 ~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~ 63 (121)
T d1d7ya2 29 PQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQP 63 (121)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred cCCeEEEECcchhHHHHHHHhhcccc-eEEEEeecc
Confidence 57899999999999999999999997 599998864
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=96.30 E-value=0.0045 Score=53.05 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=47.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHHcCC-CeEEEEeCC--HHHHHHHHHHhC----C-cceeecccchHHhhcCCCcEEEEcC
Q 010322 247 ARMLVIG-AGKMGKLVIKHLVAKGC-TKMVVVNRS--EERVAAICEELN----G-VEIIYKPLSEMLSCAADADVVFTST 317 (513)
Q Consensus 247 ~~VlVIG-aG~mG~~ia~~L~~~G~-~~V~v~nRs--~~ra~~la~~~g----~-~~~~~~~~~~~~~~l~~aDVVI~AT 317 (513)
.+|.||| +|.+|..++..|...|. .++.++|.. .+.++..+..+. . ....+. ..+ .+.+.++|+||.+.
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~-~~~-~~~~~~aDiVvita 78 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVR-QGG-YEDTAGSDVVVITA 78 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEE-ECC-GGGGTTCSEEEECC
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEe-eCC-HHHhhhcCEEEEec
Confidence 3799999 69999999999998875 579999853 344433333321 1 111111 122 34568999999887
Q ss_pred CCCc
Q 010322 318 ASEA 321 (513)
Q Consensus 318 ~s~~ 321 (513)
|.+.
T Consensus 79 G~~~ 82 (142)
T d1o6za1 79 GIPR 82 (142)
T ss_dssp CCCC
T ss_pred cccc
Confidence 7653
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.0024 Score=60.21 Aligned_cols=46 Identities=26% Similarity=0.434 Sum_probs=42.0
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHh
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEEL 290 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~ 290 (513)
+.||+++|.|+ ++||+++++.|...|+ +|++++|+.++++++++++
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~ 58 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHC 58 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHH
Confidence 78999999999 8999999999999998 4999999999998877654
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.0073 Score=46.22 Aligned_cols=47 Identities=23% Similarity=0.341 Sum_probs=40.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN 291 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g 291 (513)
..++.+|+|.|+ |.+|...++.++..|++ |+.+.+++++. ++.+++|
T Consensus 29 ~~~~~~vlI~gasGgVG~~aiQlak~~G~~-Vi~~t~s~~k~-~~~~~lG 76 (77)
T d1o8ca2 29 RPQDGEIVVTGASGGVGSTAVALLHKLGYQ-VVAVSGRESTH-EYLKSLG 76 (77)
T ss_dssp CGGGCEEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCGGGH-HHHHHHT
T ss_pred ccCCCcEEEEeCCCcHHHHHHHHHHHcCCe-EEEEECCHHHH-HHHHHCC
Confidence 347899999988 99999999999999995 88888898887 6666665
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.0086 Score=51.21 Aligned_cols=75 Identities=15% Similarity=0.114 Sum_probs=52.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec--c-c--chHHh-hcCCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK--P-L--SEMLS-CAADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~--~-~--~~~~~-~l~~aDVVI~AT~s~ 320 (513)
.+++|+|+|.+|+.+++.|...|.. +++++.++++.....+......+.+. + . +.+.+ -+..||.||.+|+..
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~~-v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d 82 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQN-VTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND 82 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC-EEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccH
Confidence 4699999999999999999999985 88999888765554444311111221 1 1 12322 367899999999886
Q ss_pred cc
Q 010322 321 AP 322 (513)
Q Consensus 321 ~~ 322 (513)
..
T Consensus 83 ~~ 84 (153)
T d1id1a_ 83 AD 84 (153)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.22 E-value=0.0033 Score=58.94 Aligned_cols=77 Identities=23% Similarity=0.306 Sum_probs=53.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEE-EeCCHHHHHHHHHHh---CCcceeec--cc---chHH-------h
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVV-VNRSEERVAAICEEL---NGVEIIYK--PL---SEML-------S 305 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v-~nRs~~ra~~la~~~---g~~~~~~~--~~---~~~~-------~ 305 (513)
+|.||+|+|.|+ |++|..+++.|...|++ |++ .+|+.+.++.+.+++ |. ++... +. ++.. +
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~~-Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~ 80 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVS 80 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEcCCChHHHHHHHHHHHHcCC-CceEecCCCCCHHHHHHHHHHHHH
Confidence 578999999999 89999999999999996 666 466766666665554 32 11111 11 1222 2
Q ss_pred hcCCCcEEEEcCCCCc
Q 010322 306 CAADADVVFTSTASEA 321 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~ 321 (513)
....-|++|++.+...
T Consensus 81 ~~g~idilinnag~~~ 96 (259)
T d1ja9a_ 81 HFGGLDFVMSNSGMEV 96 (259)
T ss_dssp HHSCEEEEECCCCCCC
T ss_pred HcCCCcEEEecccccc
Confidence 2357899999988753
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=96.19 E-value=0.0037 Score=55.13 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=49.8
Q ss_pred CCeEEEEcccHHHHHH--HHHHHHc---CCCeEEEEeCCHHHHHHHHHHhC------CcceeecccchHHhhcCCCcEEE
Q 010322 246 TARMLVIGAGKMGKLV--IKHLVAK---GCTKMVVVNRSEERVAAICEELN------GVEIIYKPLSEMLSCAADADVVF 314 (513)
Q Consensus 246 g~~VlVIGaG~mG~~i--a~~L~~~---G~~~V~v~nRs~~ra~~la~~~g------~~~~~~~~~~~~~~~l~~aDVVI 314 (513)
.-+|.|||+|..|... ...+... ...+|.++|.++++++..+..+. +....+....+..+++.+||+||
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv 82 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 82 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence 4579999999876542 2223222 22589999999998864333221 11223444557788899999999
Q ss_pred EcCCCCc
Q 010322 315 TSTASEA 321 (513)
Q Consensus 315 ~AT~s~~ 321 (513)
.+.+.+.
T Consensus 83 itag~~~ 89 (167)
T d1u8xx1 83 AHIRVGK 89 (167)
T ss_dssp ECCCTTH
T ss_pred ECCCcCC
Confidence 9988764
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.0016 Score=59.80 Aligned_cols=75 Identities=19% Similarity=0.401 Sum_probs=52.7
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhCCccee---ecccchHHhhcCCCcEEEEcCC
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGC-TKMVVVNRSEERVAAICEELNGVEII---YKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~-~~V~v~nRs~~ra~~la~~~g~~~~~---~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
..+++|+|.|+ |-+|+.+++.|...|. .+|++++|++.+.... ........ +...+++...+.++|+||.|.+
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~--~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~ 89 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE--AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLG 89 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG--GGGGCEEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccc--ccceeeeeeeccccccccccccccccccccccc
Confidence 36789999999 9999999999999885 5799999975432111 11111112 2233456667889999999987
Q ss_pred CC
Q 010322 319 SE 320 (513)
Q Consensus 319 s~ 320 (513)
..
T Consensus 90 ~~ 91 (232)
T d2bkaa1 90 TT 91 (232)
T ss_dssp CC
T ss_pred cc
Confidence 64
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=96.15 E-value=0.0021 Score=56.55 Aligned_cols=67 Identities=19% Similarity=0.278 Sum_probs=48.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
-+|+|+|+|.||+.++..+... +++-+.|++|+.++.. .. ......+......+.|+|+.||+....
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~-------~~--~~~~~~~~~~~~~~~D~Vvi~tp~~~h 71 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT-------KT--PVFDVADVDKHADDVDVLFLCMGSATD 71 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS-------SS--CEEEGGGGGGTTTTCSEEEECSCTTTH
T ss_pred ceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc-------cc--ccccchhhhhhccccceEEEeCCCccc
Confidence 4799999999999999999875 5666668888865431 11 122334555566789999999998754
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.10 E-value=0.0031 Score=58.71 Aligned_cols=75 Identities=11% Similarity=0.207 Sum_probs=53.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHHhCCcceeec--cc---chHHhh-------cC--
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCT-KMVVVNRSEERVAAICEELNGVEIIYK--PL---SEMLSC-------AA-- 308 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~-~V~v~nRs~~ra~~la~~~g~~~~~~~--~~---~~~~~~-------l~-- 308 (513)
..++|+|.|+ ++||+.+++.|...|+. .|+++.|+.++++++.+..+. .+.+. +. +++.+. ..
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~-~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~ 80 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDS-RVHVLPLTVTCDKSLDTFVSKVGEIVGSD 80 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCT-TEEEEECCTTCHHHHHHHHHHHHHHHGGG
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCC-ceEEEEEecCCHHHHHHHHHHHHHHhCCC
Confidence 3589999999 99999999999999974 688899999998887765443 22221 11 122211 11
Q ss_pred CCcEEEEcCCCC
Q 010322 309 DADVVFTSTASE 320 (513)
Q Consensus 309 ~aDVVI~AT~s~ 320 (513)
..|++|++.|..
T Consensus 81 ~idilinnAG~~ 92 (250)
T d1yo6a1 81 GLSLLINNAGVL 92 (250)
T ss_dssp CCCEEEECCCCC
T ss_pred CeEEEEEcCccc
Confidence 379999998764
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=96.07 E-value=0.0051 Score=53.74 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=48.5
Q ss_pred CeEEEEcccHHHHHHHHHHHH-----cCCCeEEEEeCCHHHHHHHHHHhC---CcceeecccchHHhhcCCCcEEEEcCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVA-----KGCTKMVVVNRSEERVAAICEELN---GVEIIYKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~-----~G~~~V~v~nRs~~ra~~la~~~g---~~~~~~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
.+|.|||+|..|...+..... ....+|.++|.+++++....+-.. .....+....+..+.+.++|+||.+.+
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~ 80 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR 80 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence 379999999777655543222 224689999999998754332110 111222233556778899999999988
Q ss_pred CCc
Q 010322 319 SEA 321 (513)
Q Consensus 319 s~~ 321 (513)
.+.
T Consensus 81 ~~~ 83 (162)
T d1up7a1 81 PGG 83 (162)
T ss_dssp TTH
T ss_pred cCC
Confidence 763
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=96.06 E-value=0.014 Score=54.40 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=50.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH---HHhCCcceeecc------cchHHh-------
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIC---EELNGVEIIYKP------LSEMLS------- 305 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la---~~~g~~~~~~~~------~~~~~~------- 305 (513)
++.||+|+|.|+ ++||..+|+.|.+.|++ |+++.|+.++.++++ ...+...+.+.+ .++..+
T Consensus 2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~-vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 80 (254)
T d1sbya1 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLK-NFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFD 80 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCS-EEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHH
Confidence 578999999999 79999999999999997 666656544443433 233322221111 111222
Q ss_pred hcCCCcEEEEcCCCCc
Q 010322 306 CAADADVVFTSTASEA 321 (513)
Q Consensus 306 ~l~~aDVVI~AT~s~~ 321 (513)
.....|++|++.|...
T Consensus 81 ~~g~iDilvnnAG~~~ 96 (254)
T d1sbya1 81 QLKTVDILINGAGILD 96 (254)
T ss_dssp HHSCCCEEEECCCCCC
T ss_pred HcCCCCEEEeCCCCCC
Confidence 2357899999987643
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=96.04 E-value=0.0037 Score=58.29 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=40.6
Q ss_pred CCCCCCeEEEEcc-c--HHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHHhCC
Q 010322 242 SSHATARMLVIGA-G--KMGKLVIKHLVAKGCTKMVVVNRSEERV-AAICEELNG 292 (513)
Q Consensus 242 ~~l~g~~VlVIGa-G--~mG~~ia~~L~~~G~~~V~v~nRs~~ra-~~la~~~g~ 292 (513)
+-+.||+++|.|+ | +||+++++.|...|++ |++++|+.++. ++++++++.
T Consensus 2 ~~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~-Vil~~~~~~~~~~~~~~~~~~ 55 (268)
T d2h7ma1 2 GLLDGKRILVSGIITDSSIAFHIARVAQEQGAQ-LVLTGFDRLRLIQRITDRLPA 55 (268)
T ss_dssp CTTTTCEEEECCCSSTTCHHHHHHHHHHHTTCE-EEEEECSCHHHHHHHHTTSSS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHcCCE-EEEEeCChHHHHHHHHHHcCC
Confidence 3478999999996 5 4999999999999995 99999987765 456666653
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.98 E-value=0.0037 Score=63.22 Aligned_cols=77 Identities=19% Similarity=0.275 Sum_probs=52.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH-------------------HHHHHHHHHh----CCcceeecc--
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE-------------------ERVAAICEEL----NGVEIIYKP-- 299 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~-------------------~ra~~la~~~----g~~~~~~~~-- 299 (513)
.+.+|+|||+|++|..+++.|...|+.+|+++|... .|++.+++.+ +...+....
T Consensus 36 ~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 115 (426)
T d1yovb1 36 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK 115 (426)
T ss_dssp HHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECSC
T ss_pred hcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeecc
Confidence 467899999999999999999999999999988631 1444444333 121111111
Q ss_pred c-chHHhhcCCCcEEEEcCCCCc
Q 010322 300 L-SEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 300 ~-~~~~~~l~~aDVVI~AT~s~~ 321 (513)
. +...+.+.++|+||+|+.+..
T Consensus 116 i~~~~~~~~~~~DlVi~~~Dn~~ 138 (426)
T d1yovb1 116 IQDFNDTFYRQFHIIVCGLDSII 138 (426)
T ss_dssp GGGBCHHHHTTCSEEEECCSCHH
T ss_pred ccchHHHHHHhcchheeccCcHH
Confidence 1 112345789999999988743
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.95 E-value=0.0065 Score=58.43 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=53.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCC---------HHHHHHHHHHhCCc--c--eeecccchHH----
Q 010322 243 SHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRS---------EERVAAICEELNGV--E--IIYKPLSEML---- 304 (513)
Q Consensus 243 ~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs---------~~ra~~la~~~g~~--~--~~~~~~~~~~---- 304 (513)
.+.||.++|.|+ ++||+.+++.|...|++ |++.+|+ .+.++++.++++.. . ..+...++..
T Consensus 4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~-Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 82 (302)
T d1gz6a_ 4 RFDGRVVLVTGAGGGLGRAYALAFAERGAL-VVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVK 82 (302)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHH
T ss_pred CcCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHH
Confidence 578999999999 99999999999999995 8888653 45566666655321 1 1111222222
Q ss_pred ---hhcCCCcEEEEcCCCCc
Q 010322 305 ---SCAADADVVFTSTASEA 321 (513)
Q Consensus 305 ---~~l~~aDVVI~AT~s~~ 321 (513)
+.....|++|++.|...
T Consensus 83 ~~~~~~G~iDiLVnNAGi~~ 102 (302)
T d1gz6a_ 83 TALDTFGRIDVVVNNAGILR 102 (302)
T ss_dssp HHHHHTSCCCEEEECCCCCC
T ss_pred HHHHHcCCCCEEEECCccCC
Confidence 23457899999877643
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.95 E-value=0.0024 Score=58.33 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=31.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
+|+|+|||+|+.|..+|..|...|. +|+|+++++
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEG 34 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence 5899999999999999999999998 599999863
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.0043 Score=50.96 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=31.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
.++|+|||+|.+|..+|..|...|. +|+++.|.+
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~ 54 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFD 54 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CCEEEEECCChhhHHHHHHhhcccc-EEEEEeecc
Confidence 4789999999999999999999998 599999964
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=95.90 E-value=0.012 Score=54.49 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=50.4
Q ss_pred CCCCCeEEEEcc-c--HHHHHHHHHHHHcCCCeEEEEeCCHHHHH---HHHHHhCCcc-eee--cccchHH-------hh
Q 010322 243 SHATARMLVIGA-G--KMGKLVIKHLVAKGCTKMVVVNRSEERVA---AICEELNGVE-IIY--KPLSEML-------SC 306 (513)
Q Consensus 243 ~l~g~~VlVIGa-G--~mG~~ia~~L~~~G~~~V~v~nRs~~ra~---~la~~~g~~~-~~~--~~~~~~~-------~~ 306 (513)
++.||+++|.|+ | +||+++++.|...|++ |.+++|+.+... ++....+... +.. ...++.. +.
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~-V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAE-VALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEA 83 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHh
Confidence 689999999998 4 6999999999999995 999999864432 2222222211 111 1112222 22
Q ss_pred cCCCcEEEEcCCCC
Q 010322 307 AADADVVFTSTASE 320 (513)
Q Consensus 307 l~~aDVVI~AT~s~ 320 (513)
....|++|++.+..
T Consensus 84 ~g~iDilVnnag~~ 97 (256)
T d1ulua_ 84 FGGLDYLVHAIAFA 97 (256)
T ss_dssp HSSEEEEEECCCCC
T ss_pred cCCceEEEeccccc
Confidence 35789999987653
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.89 E-value=0.0048 Score=58.17 Aligned_cols=75 Identities=13% Similarity=0.226 Sum_probs=51.6
Q ss_pred CCCeEEEE-cc-cHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCc--ceee--ccc---chHH-------hhc
Q 010322 245 ATARMLVI-GA-GKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGV--EIIY--KPL---SEML-------SCA 307 (513)
Q Consensus 245 ~g~~VlVI-Ga-G~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~--~~~~--~~~---~~~~-------~~l 307 (513)
.|++|.|| |+ ++||+.+++.|... |+ +|++++|+.+++++.++++... .+.+ .+. ++.. +..
T Consensus 1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~ 79 (275)
T d1wmaa1 1 SGIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY 79 (275)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhc
Confidence 47888655 65 99999999999886 55 6999999999998888776311 1111 111 1221 223
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|++|+..|..
T Consensus 80 g~iDiLVnNAGi~ 92 (275)
T d1wmaa1 80 GGLDVLVNNAGIA 92 (275)
T ss_dssp SSEEEEEECCCCC
T ss_pred CCcEEEEEcCCcC
Confidence 5789999987754
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.79 E-value=0.0061 Score=50.38 Aligned_cols=35 Identities=20% Similarity=0.463 Sum_probs=31.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
.+++++|||+|.+|..+|..|...|. +|+++.|++
T Consensus 31 ~~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~ 65 (122)
T d1xhca2 31 NSGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGA 65 (122)
T ss_dssp HHSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred cCCcEEEECCcHHHHHHHHHhhcccc-eEEEEeccc
Confidence 35899999999999999999999998 599999864
|
| >d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.79 E-value=0.0003 Score=62.10 Aligned_cols=98 Identities=12% Similarity=0.142 Sum_probs=60.1
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchH-----------HHHHHHhHhcCcccchhhHHHHHHHhhCcc----ccc
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQV-----------KQVVKVGQGVVGFGRNISGLFKHAISVGKR----VRT 216 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQv-----------k~A~~~a~~~~~~g~~L~~lf~~ai~v~k~----Vr~ 216 (513)
...|||+++.+.+++++++...+|+...+... ...++.|......|...+|.|++++.++.. ++.
T Consensus 57 ~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~ 136 (171)
T d1rjwa1 57 LIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPD 136 (171)
T ss_dssp BCCCSCEEEEEEEECTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCT
T ss_pred cccCCEEEEEEEEecccccCceeeeEEeeccccccccccccccCCCccccccccccceeccCccccceEecHHHEEECCC
Confidence 34699999999999999999999998875321 112233444444566677888877666542 222
Q ss_pred cccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEc
Q 010322 217 ETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIG 253 (513)
Q Consensus 217 et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIG 253 (513)
....-..+++....++..+.. +.+.|++|||||
T Consensus 137 ~~~~e~A~l~~~~~~~~~~~~----~~~~G~tVlViG 169 (171)
T d1rjwa1 137 NTIIEVQPLEKINEVFDRMLK----GQINGRVVLTLE 169 (171)
T ss_dssp TCCEEEEEGGGHHHHHHHHHT----TCCSSEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHh----cCCCCCEEEEeC
Confidence 222212233333333333322 356799999998
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.78 E-value=0.0021 Score=59.73 Aligned_cols=74 Identities=16% Similarity=0.277 Sum_probs=50.9
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchH-------HhhcCCCcEE
Q 010322 242 SSHATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEM-------LSCAADADVV 313 (513)
Q Consensus 242 ~~l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~-------~~~l~~aDVV 313 (513)
.++.||+++|.|+ ++||+.+++.|...|++ |++++|+.+..+.+ +. ....+...++. .+.....|++
T Consensus 3 psl~gK~~lITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~---~~-~~~Dv~~~~~v~~~~~~~~~~~g~iDiL 77 (237)
T d1uzma1 3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHK-VAVTHRGSGAPKGL---FG-VEVDVTDSDAVDRAFTAVEEHQGPVEVL 77 (237)
T ss_dssp CCCCCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSSCCCTTS---EE-EECCTTCHHHHHHHHHHHHHHHSSCSEE
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCcchhcCc---eE-EEEecCCHHHHHHHHHHHHHhcCCceEE
Confidence 4689999999999 89999999999999995 99999987654221 11 00111111222 2223578999
Q ss_pred EEcCCCC
Q 010322 314 FTSTASE 320 (513)
Q Consensus 314 I~AT~s~ 320 (513)
|++.+..
T Consensus 78 VnnAG~~ 84 (237)
T d1uzma1 78 VSNAGLS 84 (237)
T ss_dssp EEECSCC
T ss_pred Eeeeccc
Confidence 9998764
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.77 E-value=0.005 Score=54.82 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=44.3
Q ss_pred eEEEEcccHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhCCccee------------ecccchHHhhcCCCcEEE
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKG-CTKMVVVNRSEERVAAICEELNGVEII------------YKPLSEMLSCAADADVVF 314 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G-~~~V~v~nRs~~ra~~la~~~g~~~~~------------~~~~~~~~~~l~~aDVVI 314 (513)
+|.|.|.|-||+.+++.+..++ ++-|.|.++++..........+..... +....++...+.++|+||
T Consensus 3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi 82 (178)
T d1b7go1 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV 82 (178)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence 7999999999999999999864 443444455544332333333211000 001112333345799999
Q ss_pred EcCCCCc
Q 010322 315 TSTASEA 321 (513)
Q Consensus 315 ~AT~s~~ 321 (513)
+|||...
T Consensus 83 ecTG~f~ 89 (178)
T d1b7go1 83 DTTPNGV 89 (178)
T ss_dssp ECCSTTH
T ss_pred ECCCCcC
Confidence 9999854
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=95.74 E-value=0.018 Score=53.22 Aligned_cols=72 Identities=13% Similarity=0.203 Sum_probs=50.5
Q ss_pred EEEEcc-cHHHHHHHHHHHHcCCC------eEEEEeCCHHHHHHHHHHhCCc--ceeec--cc---chH-------Hhhc
Q 010322 249 MLVIGA-GKMGKLVIKHLVAKGCT------KMVVVNRSEERVAAICEELNGV--EIIYK--PL---SEM-------LSCA 307 (513)
Q Consensus 249 VlVIGa-G~mG~~ia~~L~~~G~~------~V~v~nRs~~ra~~la~~~g~~--~~~~~--~~---~~~-------~~~l 307 (513)
|+|.|+ ++||+++++.|...|++ .|.+++|+.++++++++++... ..... +. +++ .+..
T Consensus 4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 83 (240)
T d2bd0a1 4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVERY 83 (240)
T ss_dssp EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 567788 89999999999999986 4889999999998888776321 11111 11 222 2234
Q ss_pred CCCcEEEEcCCCC
Q 010322 308 ADADVVFTSTASE 320 (513)
Q Consensus 308 ~~aDVVI~AT~s~ 320 (513)
...|++|++.+..
T Consensus 84 g~iDilvnnAg~~ 96 (240)
T d2bd0a1 84 GHIDCLVNNAGVG 96 (240)
T ss_dssp SCCSEEEECCCCC
T ss_pred CCcceeecccccc
Confidence 5789999887654
|
| >d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.00053 Score=61.46 Aligned_cols=97 Identities=8% Similarity=0.043 Sum_probs=64.2
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCcccc-hhhHHHHHHHhhC--------c
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVGFGR-NISGLFKHAISVG--------K 212 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~~g~-~L~~lf~~ai~v~--------k 212 (513)
...|||+++.+.+|+++++++.+|+..+.... ...++.|......|. ..++.|.+++.++ +
T Consensus 65 ~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~~g~~~~~G~~aey~~~~~~~~~~lP~ 144 (185)
T d1pl8a1 65 MVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPD 144 (185)
T ss_dssp EECCCEEEEEEEEECTTCCSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCT
T ss_pred eeeeeeeeeeEEEeccceeeecccccceecceeccccchhhccchhchhccceeeecccccccceEEEEEchHHEEECCC
Confidence 35799999999999999999999999876321 123444444444443 3455566655443 3
Q ss_pred cccccccccCCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcccH
Q 010322 213 RVRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGK 256 (513)
Q Consensus 213 ~Vr~et~i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~ 256 (513)
.+..+... ..|++++.+|++.++. ..|++|+| |+|+
T Consensus 145 ~~~~~~aa-~~pl~~a~~a~~~~~~------~~G~~VlI-g~GP 180 (185)
T d1pl8a1 145 NVKPLVTH-RFPLEKALEAFETFKK------GLGLKIML-KCDP 180 (185)
T ss_dssp TCGGGEEE-EEEGGGHHHHHHHHHT------TCCSEEEE-ECCT
T ss_pred CCCHHHHH-HHHHHHHHHHHHHhCC------CCCCEEEE-EeCC
Confidence 33444333 3578889999887653 35788876 9987
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=95.65 E-value=0.0097 Score=51.34 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=51.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCC--------eEEEEeCCHHHHHHHHHHhCCc----ceeecccchHHhhcCCCcE
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCT--------KMVVVNRSEERVAAICEELNGV----EIIYKPLSEMLSCAADADV 312 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~--------~V~v~nRs~~ra~~la~~~g~~----~~~~~~~~~~~~~l~~aDV 312 (513)
..+|.|+|| |.+|..++..|...+.- ++...+++.++++..+..+... ...+....+..+.+.++|+
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv 83 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY 83 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccE
Confidence 458999997 99999999999875531 2333456666666655544321 1122334556778999999
Q ss_pred EEEcCCCCc
Q 010322 313 VFTSTASEA 321 (513)
Q Consensus 313 VI~AT~s~~ 321 (513)
||.+.|.+.
T Consensus 84 ViitaG~~~ 92 (154)
T d1y7ta1 84 ALLVGAAPR 92 (154)
T ss_dssp EEECCCCCC
T ss_pred EEeecCcCC
Confidence 999988763
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.65 E-value=0.0078 Score=49.11 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=31.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
..++++|||+|.+|..+|..|...|. +|+++.+.+
T Consensus 20 ~p~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~ 54 (115)
T d1lvla2 20 LPQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARE 54 (115)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHhhccc-ceEEEeeec
Confidence 35899999999999999999999998 599998853
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.64 E-value=0.016 Score=51.11 Aligned_cols=75 Identities=15% Similarity=0.136 Sum_probs=47.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhCCcceeec--------------ccchHHhhcCCCc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKG-CTKMVVVNRSEERVAAICEELNGVEIIYK--------------PLSEMLSCAADAD 311 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G-~~~V~v~nRs~~ra~~la~~~g~~~~~~~--------------~~~~~~~~l~~aD 311 (513)
.+|.|.|.|-||+.+++.+.... .+-|.|.+.++......+.+++.. .... ...++.....++|
T Consensus 3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD 81 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIP-VYAASEEFIPRFEKEGFEVAGTLNDLLEKVD 81 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCC-EEESSGGGHHHHHHHTCCCSCBHHHHHTTCS
T ss_pred EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCce-eecccccceeeecccCccccchhhhhhccCC
Confidence 48999999999999999998764 444445556554433444444311 1000 0112334456899
Q ss_pred EEEEcCCCCcc
Q 010322 312 VVFTSTASEAP 322 (513)
Q Consensus 312 VVI~AT~s~~~ 322 (513)
+||+|||....
T Consensus 82 vViEcTG~f~~ 92 (172)
T d2czca2 82 IIVDATPGGIG 92 (172)
T ss_dssp EEEECCSTTHH
T ss_pred EEEECCCCCCC
Confidence 99999998643
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.56 E-value=0.0046 Score=54.72 Aligned_cols=33 Identities=30% Similarity=0.597 Sum_probs=30.3
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
+|+|||+|+.|..+|..|...|.++|+|+.+++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 599999999999999999999986799999873
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=95.43 E-value=0.017 Score=55.50 Aligned_cols=76 Identities=17% Similarity=0.154 Sum_probs=53.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC---Ccce------eecccchHHhhcCCCcEEE
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN---GVEI------IYKPLSEMLSCAADADVVF 314 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g---~~~~------~~~~~~~~~~~l~~aDVVI 314 (513)
+|++|||.|+ |-+|+.+++.|...|.+ |..+.|+..+...+..... .... .+.....+.+++.++|.|+
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~-V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~ 88 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEHGYK-VRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA 88 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHCcCE-EEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence 6899999999 88999999999999984 8888998877655433211 1011 1112234556788999999
Q ss_pred EcCCCCc
Q 010322 315 TSTASEA 321 (513)
Q Consensus 315 ~AT~s~~ 321 (513)
.+.....
T Consensus 89 ~~a~~~~ 95 (342)
T d1y1pa1 89 HIASVVS 95 (342)
T ss_dssp ECCCCCS
T ss_pred hhccccc
Confidence 8876654
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.27 E-value=0.011 Score=52.50 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=48.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCc------------ceeecccchHHhhcCCCcEEE
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGV------------EIIYKPLSEMLSCAADADVVF 314 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~------------~~~~~~~~~~~~~l~~aDVVI 314 (513)
++|.|||.|-+|..+|..+ +.|. +|+.+|.++++.+.+....... ........+....+.++|+++
T Consensus 1 MkI~ViGlG~vGl~~a~~~-a~g~-~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~ 78 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLL-SLQN-EVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVI 78 (196)
T ss_dssp CEEEEECCSHHHHHHHHHH-TTTS-EEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEE
T ss_pred CEEEEECCChhHHHHHHHH-HCCC-cEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhcccccc
Confidence 4799999999999998766 5787 5999999998886664321000 000001112223345789999
Q ss_pred EcCCCCc
Q 010322 315 TSTASEA 321 (513)
Q Consensus 315 ~AT~s~~ 321 (513)
.||+.+.
T Consensus 79 v~vpt~~ 85 (196)
T d1dlja2 79 IATPTNY 85 (196)
T ss_dssp ECCCCCE
T ss_pred ccCCccc
Confidence 9998874
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=95.18 E-value=0.0077 Score=55.05 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=31.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
..++|+|||+|+.|..+|..|...|+ +|+|++|++
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSP 37 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence 46789999999999999999999999 599999853
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=95.15 E-value=0.0094 Score=53.83 Aligned_cols=34 Identities=26% Similarity=0.478 Sum_probs=30.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
..++|+|||+|.+|..+|..|...|. +|+|++|.
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~ 38 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGY-SVHILARD 38 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCC
Confidence 45789999999999999999999998 59999974
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=95.15 E-value=0.0098 Score=50.75 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=31.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCC-eEEEEeCCH
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCT-KMVVVNRSE 280 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~-~V~v~nRs~ 280 (513)
.|++|+|||+|.+|..+|..|+..|.. +|+++++++
T Consensus 1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 489999999999999999999998753 799998765
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=95.08 E-value=0.012 Score=53.62 Aligned_cols=74 Identities=15% Similarity=0.084 Sum_probs=51.4
Q ss_pred CCC-CeEEEEcccHHHHHHHHHHHHcCCC-----eEEEEeCCHHHHHHHHHHhCCcceeecc--cchHHhhcCCCcEEEE
Q 010322 244 HAT-ARMLVIGAGKMGKLVIKHLVAKGCT-----KMVVVNRSEERVAAICEELNGVEIIYKP--LSEMLSCAADADVVFT 315 (513)
Q Consensus 244 l~g-~~VlVIGaG~mG~~ia~~L~~~G~~-----~V~v~nRs~~ra~~la~~~g~~~~~~~~--~~~~~~~l~~aDVVI~ 315 (513)
+.| |+|.|||.|..|.+.|..|+..|++ +|+|--|...+..+.|+.-|- .... .-+..++...+|+|..
T Consensus 41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf---~v~~~~v~~v~EAv~~ADiVmi 117 (226)
T d1qmga2 41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGF---SEENGTLGDMWETISGSDLVLL 117 (226)
T ss_dssp TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTC---CGGGTCEEEHHHHHHTCSEEEE
T ss_pred hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCC---ccCCCcccCHHHHHhhCCEEEE
Confidence 356 8999999999999999999995531 377766654343455555442 1111 1245567789999999
Q ss_pred cCCCC
Q 010322 316 STASE 320 (513)
Q Consensus 316 AT~s~ 320 (513)
.+|..
T Consensus 118 LlPDe 122 (226)
T d1qmga2 118 LISDS 122 (226)
T ss_dssp CSCHH
T ss_pred ecchH
Confidence 99875
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=95.04 E-value=0.021 Score=45.28 Aligned_cols=71 Identities=15% Similarity=0.136 Sum_probs=49.1
Q ss_pred CCCeEEEEcccHHHHHH-HHHHHHcCCCeEEEEeCCHH-HHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 245 ATARMLVIGAGKMGKLV-IKHLVAKGCTKMVVVNRSEE-RVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~i-a~~L~~~G~~~V~v~nRs~~-ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
..+++-+||-|++|... |+.|...|+ .|+.+|+... ..+.+.+ .|. .+....+ .+.+.++|+||-+++.+.
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L~~-~Gi---~v~~g~~-~~~i~~~d~vV~S~AI~~ 79 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRLAQ-AGA---KIYIGHA-EEHIEGASVVVVSSAIKD 79 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHHHH-TTC---EEEESCC-GGGGTTCSEEEECTTSCT
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHHHH-CCC---eEEECCc-cccCCCCCEEEECCCcCC
Confidence 57899999999999665 899999999 4999998643 3334443 442 2222122 234678999988877654
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.02 E-value=0.019 Score=49.35 Aligned_cols=76 Identities=16% Similarity=0.146 Sum_probs=50.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCC------CeEEEEeCC--HHHHHHHHHHhC--Cc--ceeecccchHHhhcCCCcE
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGC------TKMVVVNRS--EERVAAICEELN--GV--EIIYKPLSEMLSCAADADV 312 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~------~~V~v~nRs--~~ra~~la~~~g--~~--~~~~~~~~~~~~~l~~aDV 312 (513)
..+|.|||| |.+|..++..|...+. -.+.+++.+ .++++.++.++. .. ...+....+.++.+.++|+
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 82 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 82 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceE
Confidence 358999996 9999999999876443 246666654 355555554331 10 1122233456778899999
Q ss_pred EEEcCCCCc
Q 010322 313 VFTSTASEA 321 (513)
Q Consensus 313 VI~AT~s~~ 321 (513)
||.+.|.+.
T Consensus 83 VVitag~~~ 91 (154)
T d5mdha1 83 AILVGSMPR 91 (154)
T ss_dssp EEECCSCCC
T ss_pred EEEecccCC
Confidence 999988864
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=94.99 E-value=1.2 Score=40.29 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=63.2
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHH-HcCCCeEEEEeC----------CHHHHHHHHHHhCCc----ceeecccchHHhh
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLV-AKGCTKMVVVNR----------SEERVAAICEELNGV----EIIYKPLSEMLSC 306 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~-~~G~~~V~v~nR----------s~~ra~~la~~~g~~----~~~~~~~~~~~~~ 306 (513)
.++.|++|+|-|.|.+|..++++|. ..|++-|.+.+. +...+..+.++.+.. .....+.+++..
T Consensus 27 ~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 105 (234)
T d1b26a1 27 IDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE- 105 (234)
T ss_dssp CCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHHT-
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeeccccccc-
Confidence 5789999999999999999999996 569875555543 334444444443321 011122222221
Q ss_pred cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCCCCCcc
Q 010322 307 AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSC 357 (513)
Q Consensus 307 l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPrdidp~ 357 (513)
..|||+|-|.-. ..|+.+....+. ..+++.-+..+ ++|+
T Consensus 106 -~~~DI~~PcA~~--~~I~~~~a~~l~--------~~~I~e~AN~p-~t~~ 144 (234)
T d1b26a1 106 -LDVDILVPAALE--GAIHAGNAERIK--------AKAVVEGANGP-TTPE 144 (234)
T ss_dssp -SCCSEEEECSCT--TCBCHHHHTTCC--------CSEEECCSSSC-BCHH
T ss_pred -cccceeecchhc--ccccHHHHHHhh--------hceEeecCCCC-CCHH
Confidence 389999998443 356777766542 25677766432 3443
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.97 E-value=0.032 Score=48.74 Aligned_cols=74 Identities=18% Similarity=0.145 Sum_probs=46.8
Q ss_pred CeEEEEcccHHH--HHHHHHHHHc---CCCeEEEEeCCHHH--HHHHHH-------HhCCcceeecccchHHhhcCCCcE
Q 010322 247 ARMLVIGAGKMG--KLVIKHLVAK---GCTKMVVVNRSEER--VAAICE-------ELNGVEIIYKPLSEMLSCAADADV 312 (513)
Q Consensus 247 ~~VlVIGaG~mG--~~ia~~L~~~---G~~~V~v~nRs~~r--a~~la~-------~~g~~~~~~~~~~~~~~~l~~aDV 312 (513)
.+|.|||||..| ..++..+... ...+|.++|.++++ ++.+-. .++ ....+....+..+.+.++|+
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~-~~~~~~~~td~~~al~gaDv 80 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAG-VPIEIHLTLDRRRALDGADF 80 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCCEEEEESCHHHHHTTCSE
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcC-CCceeeecCCchhhcCCCCE
Confidence 379999999655 4444444432 23589999997754 332221 112 12233344667778899999
Q ss_pred EEEcCCCCc
Q 010322 313 VFTSTASEA 321 (513)
Q Consensus 313 VI~AT~s~~ 321 (513)
||.+.+.+.
T Consensus 81 Vv~ta~~~~ 89 (169)
T d1s6ya1 81 VTTQFRVGG 89 (169)
T ss_dssp EEECCCTTH
T ss_pred EEEccccCC
Confidence 999998874
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=94.92 E-value=0.021 Score=52.51 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=52.7
Q ss_pred CCCeEEEEcccH----HHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhc--CCCcEEEEc
Q 010322 245 ATARMLVIGAGK----MGKLVIKHLVAK--GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCA--ADADVVFTS 316 (513)
Q Consensus 245 ~g~~VlVIGaG~----mG~~ia~~L~~~--G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l--~~aDVVI~A 316 (513)
+.-+|+|||+|. ++...+..+... +++-+.+++++.++++.++++++..... .+++..+.+ .+.|+|+.|
T Consensus 15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~iD~V~i~ 92 (237)
T d2nvwa1 15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHAT--GFDSLESFAQYKDIDMIVVS 92 (237)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCE--EESCHHHHHHCTTCSEEEEC
T ss_pred CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccce--eecchhhcccccccceeecc
Confidence 345899999987 566666677654 4544558999999999999998642211 234444443 478999999
Q ss_pred CCCCcc
Q 010322 317 TASEAP 322 (513)
Q Consensus 317 T~s~~~ 322 (513)
|+....
T Consensus 93 tp~~~h 98 (237)
T d2nvwa1 93 VKVPEH 98 (237)
T ss_dssp SCHHHH
T ss_pred CCCcch
Confidence 987644
|
| >d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.82 E-value=0.0011 Score=58.88 Aligned_cols=97 Identities=10% Similarity=0.073 Sum_probs=63.8
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCccc-chhhHHHHHHHhhCc--------
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVGFG-RNISGLFKHAISVGK-------- 212 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~~g-~~L~~lf~~ai~v~k-------- 212 (513)
...|||+++.+.+|+++++.+.+|+..+.... ...++.|.+....+ ...+|.|++++.++.
T Consensus 59 ~i~GhE~~G~Vv~vG~~v~~~~~GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~ 138 (178)
T d1e3ja1 59 MVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPD 138 (178)
T ss_dssp EECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCT
T ss_pred eeeccccceEEEecCcccCCCCCCCEEEECcccccCCccccccCCccccccccceeccccccccceeeeecccceeeCCC
Confidence 36899999999999999999999998876321 11233333333322 234677777665543
Q ss_pred ccccccccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEEcc
Q 010322 213 RVRTETNIA-AGAVSVSSAAVELALMKLPESSHATARMLVIGA 254 (513)
Q Consensus 213 ~Vr~et~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVIGa 254 (513)
.+..+.... ..+.+++++|++.++. ..|.+|+|+|+
T Consensus 139 ~~~~~~aa~~~~~~~ta~~a~~~~~~------~~g~~VlVig~ 175 (178)
T d1e3ja1 139 NCNVKQLVTHSFKLEQTVDAFEAARK------KADNTIKVMIS 175 (178)
T ss_dssp TCCCGGGEEEEEEGGGHHHHHHHHHH------CCTTCSEEEEE
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHhCC------CCCCEEEEEcc
Confidence 333333322 3577888999877643 36899999985
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=94.81 E-value=0.034 Score=43.48 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=47.3
Q ss_pred CeEEEEcccHHHH-HHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCc
Q 010322 247 ARMLVIGAGKMGK-LVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGaG~mG~-~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.+|-+||-|++|. .+|+.|...|+ .|+.+|+.+....+.-+..|. .+.. ....+.+.++|+||-+++.+.
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~~~~t~~L~~~Gi---~i~~-gh~~~~i~~~d~vV~SsAI~~ 72 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEETERTAYLRKLGI---PIFV-PHSADNWYDPDLVIKTPAVRD 72 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTC---CEES-SCCTTSCCCCSEEEECTTCCT
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCCChhHHHHHHCCC---eEEe-eecccccCCCCEEEEecCcCC
Confidence 5799999999998 55788999999 599999976433222334442 2221 112234678999998877664
|
| >d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Probab=94.80 E-value=0.0052 Score=58.91 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=63.3
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHc----------CCCeEEEEeCC----HHHH--HHHHHHhCCcceeecccchHHh
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAK----------GCTKMVVVNRS----EERV--AAICEELNGVEIIYKPLSEMLS 305 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~----------G~~~V~v~nRs----~~ra--~~la~~~g~~~~~~~~~~~~~~ 305 (513)
.++.+.+++|.|+|..|..++..+... +.++|+++|+. .+|. ......+-. ......++.+
T Consensus 21 k~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~~~a~---~~~~~~~l~~ 97 (298)
T d1gq2a1 21 NRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFAH---EHCEMKNLED 97 (298)
T ss_dssp SCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGGCB---SCCCCCCHHH
T ss_pred CCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHHHHHH---HhhhhhhhHH
Confidence 578899999999999999999888643 34679999983 1221 000111110 0111223333
Q ss_pred hcC--CCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 306 CAA--DADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 306 ~l~--~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
.++ ..+++|-+++.+ .+|+++.++.+.. -..+.+++-||.|-
T Consensus 98 ~i~~vkptvliG~s~~~-g~ft~evv~~ma~----~~~~PIIFaLSNPt 141 (298)
T d1gq2a1 98 IVKDIKPTVLIGVAAIG-GAFTQQILQDMAA----FNKRPIIFALSNPT 141 (298)
T ss_dssp HHHHHCCSEEEECSCCT-TCSCHHHHHHHHH----HCSSCEEEECCSSG
T ss_pred HhhccChheeEeccccc-CcCCHHHHHHHHh----hCCCCEEEEccCCC
Confidence 332 467888877765 5678888765322 13457888999884
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=94.80 E-value=0.017 Score=53.64 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=32.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
-..++|+|||+|..|..+|..|...|. +|+|+++++
T Consensus 28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~ 63 (370)
T d2iida1 28 SNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE 63 (370)
T ss_dssp SSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence 356899999999999999999999998 599999864
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.80 E-value=0.01 Score=50.71 Aligned_cols=35 Identities=31% Similarity=0.656 Sum_probs=31.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeC
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNR 278 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR 278 (513)
.+.|++|+|||+|.+|..-++.|...|+ +|+|+..
T Consensus 10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap 44 (150)
T d1kyqa1 10 QLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSP 44 (150)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEE
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 4789999999999999999999999998 4998865
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.68 E-value=0.015 Score=47.32 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=31.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
..++++|||+|.+|..+|..|...|.+ |+++.|.+
T Consensus 21 ~p~~v~IiGgG~ig~E~A~~l~~~G~~-Vtlve~~~ 55 (117)
T d1ebda2 21 VPKSLVVIGGGYIGIELGTAYANFGTK-VTILEGAG 55 (117)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred cCCeEEEECCCccceeeeeeecccccE-EEEEEecc
Confidence 358999999999999999999999984 99999875
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=94.68 E-value=0.029 Score=49.25 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=44.5
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEE-EEeCCHHHHHHHHHHhCCcceeecc--------------cchHHhhcCCCc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMV-VVNRSEERVAAICEELNGVEIIYKP--------------LSEMLSCAADAD 311 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~-v~nRs~~ra~~la~~~g~~~~~~~~--------------~~~~~~~l~~aD 311 (513)
.+|.|-|.|-||+.+++.+...+--+|. |.++++.-....+..++.. ..... ..+....+.++|
T Consensus 2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vD 80 (171)
T d1cf2o1 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYD-LYVAIPERVKLFEKAGIEVAGTVDDMLDEAD 80 (171)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCC-EEESSGGGHHHHHHTTCCCCEEHHHHHHTCS
T ss_pred eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCc-eEecccccceeecccCcccCCChhHhhcCCC
Confidence 4799999999999999999877633444 4445443222333343321 11100 012233346899
Q ss_pred EEEEcCCCCc
Q 010322 312 VVFTSTASEA 321 (513)
Q Consensus 312 VVI~AT~s~~ 321 (513)
+||+|||.-.
T Consensus 81 vViEcTG~f~ 90 (171)
T d1cf2o1 81 IVIDCTPEGI 90 (171)
T ss_dssp EEEECCSTTH
T ss_pred EEEEccCCCC
Confidence 9999999854
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.63 E-value=0.013 Score=53.54 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=30.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
-+|+|||+|+.|..+|..|...|..+|+|+.|++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~ 35 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS 35 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 4799999999999999999999987799999864
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.51 E-value=0.02 Score=53.20 Aligned_cols=48 Identities=29% Similarity=0.397 Sum_probs=41.2
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHH---cCCCeEEEEeCCHHHHHHHHHHh
Q 010322 242 SSHATARMLVIGA-GKMGKLVIKHLVA---KGCTKMVVVNRSEERVAAICEEL 290 (513)
Q Consensus 242 ~~l~g~~VlVIGa-G~mG~~ia~~L~~---~G~~~V~v~nRs~~ra~~la~~~ 290 (513)
.++.||.++|.|+ ++||+.+++.|.. .|+ +|++++|+.++++++++++
T Consensus 2 ~~L~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~~~~l 53 (259)
T d1oaaa_ 2 DGLGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEEL 53 (259)
T ss_dssp CCCBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHHHHHH
Confidence 3678998888899 8999999999985 577 5999999999998888765
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.42 E-value=0.022 Score=46.96 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=32.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
+..+++|+|||+|.+|..+|..|...|.+ |+++.+.+
T Consensus 27 ~~~~k~vvViGgG~iG~E~A~~l~~~g~~-Vtlie~~~ 63 (123)
T d1nhpa2 27 DPEVNNVVVIGSGYIGIEAAEAFAKAGKK-VTVIDILD 63 (123)
T ss_dssp CTTCCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred ccCCCEEEEECChHHHHHHHHHhhccceE-EEEEEecC
Confidence 34678999999999999999999999985 99998864
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=94.33 E-value=0.046 Score=52.32 Aligned_cols=73 Identities=23% Similarity=0.316 Sum_probs=48.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHH--HHHHHhCCcceeeccc-c---hHHhhcCCCcEEEEcC
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVA--AICEELNGVEIIYKPL-S---EMLSCAADADVVFTST 317 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~--~la~~~g~~~~~~~~~-~---~~~~~l~~aDVVI~AT 317 (513)
..|+|+|+|+ |.+|..+++.|.+.|.+ |++..|++.+.. .+. ...+..+..-+. + .+..++.++|+++..+
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~-V~~l~R~~~~~~~~~~~-~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~ 79 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHH-VRAQVHSLKGLIAEELQ-AIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINT 79 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCC-EEEEESCSCSHHHHHHH-TSTTEEEEESCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCe-EEEEECCcchhhhhhhc-ccCCCEEEEeeCCCcHHHHHHHhcCCceEEeec
Confidence 4689999998 99999999999999985 888989765432 222 122221111111 1 2345567888888766
Q ss_pred CC
Q 010322 318 AS 319 (513)
Q Consensus 318 ~s 319 (513)
+.
T Consensus 80 ~~ 81 (350)
T d1xgka_ 80 TS 81 (350)
T ss_dssp CS
T ss_pred cc
Confidence 54
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.32 E-value=0.018 Score=47.43 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=31.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
..++++|||+|.+|.-+|..|...|.+ |+++.+++
T Consensus 22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~-Vtii~~~~ 56 (122)
T d1v59a2 22 IPKRLTIIGGGIIGLEMGSVYSRLGSK-VTVVEFQP 56 (122)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSS
T ss_pred CCCeEEEECCCchHHHHHHHHHhhCcc-eeEEEecc
Confidence 357999999999999999999999984 99999864
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=94.24 E-value=0.089 Score=46.14 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=51.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHc---CCC---eEEEEeCCH--HHHHHHHHHhCCc----ceeecccchHHhhcCCCc
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAK---GCT---KMVVVNRSE--ERVAAICEELNGV----EIIYKPLSEMLSCAADAD 311 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~---G~~---~V~v~nRs~--~ra~~la~~~g~~----~~~~~~~~~~~~~l~~aD 311 (513)
...+|.|+|| |.+|..++..|... |.. .+.+++... +.++.++-++... ...+....+..+.+.++|
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aD 102 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD 102 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCc
Confidence 3458999997 99999999998864 321 466667644 4455555443211 112333456778889999
Q ss_pred EEEEcCCCCc
Q 010322 312 VVFTSTASEA 321 (513)
Q Consensus 312 VVI~AT~s~~ 321 (513)
+||-+.+.+.
T Consensus 103 vVvi~ag~~r 112 (175)
T d7mdha1 103 WALLIGAKPR 112 (175)
T ss_dssp EEEECCCCCC
T ss_pred eEEEeeccCC
Confidence 9999887763
|
| >d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.16 E-value=0.0021 Score=56.67 Aligned_cols=93 Identities=18% Similarity=0.179 Sum_probs=66.0
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCcccchhhHHHHHHHhhCc--------c
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVGFGRNISGLFKHAISVGK--------R 213 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~ 213 (513)
...|||+++.+.+|+++++.+.+|+..++... +...+.|.+....|...+|.|++++.++. .
T Consensus 59 ~v~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~ 138 (171)
T d1h2ba1 59 YTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKD 138 (171)
T ss_dssp EECCCCEEEEEEEECTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTT
T ss_pred cccceeeeeeeecccCCCCcCCCCCEEEEcCccCCCCcccccccccccccccccceeecccccceeeeehhhcceecCCC
Confidence 35799999999999999999999998886432 12345666666677777888888776654 2
Q ss_pred cccccc-ccCCCchHHHHHHHHHHhhCCCCCCCCCeEEE
Q 010322 214 VRTETN-IAAGAVSVSSAAVELALMKLPESSHATARMLV 251 (513)
Q Consensus 214 Vr~et~-i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlV 251 (513)
+..+.. ....+.+++++|++. .++.|++|+|
T Consensus 139 ~~~e~aa~~~~~~~ta~~al~~-------~~~~G~~VlI 170 (171)
T d1h2ba1 139 VRVEVDIHKLDEINDVLERLEK-------GEVLGRAVLI 170 (171)
T ss_dssp CCCCEEEEEGGGHHHHHHHHHT-------TCCSSEEEEE
T ss_pred CCHHHHHHHHhHHHHHHHHHHh-------cCCCCCEEEe
Confidence 333322 234677888888653 2457999987
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=94.15 E-value=0.017 Score=52.37 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=29.8
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
.+|+|||+|..|..+|..|...|.+ |+|+.+++
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~-V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTD-AVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCC-EEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence 3699999999999999999999985 99999863
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=94.07 E-value=0.017 Score=55.40 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=50.9
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC---Ccceeecc---cchHHhhcC--CCcEEE
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN---GVEIIYKP---LSEMLSCAA--DADVVF 314 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g---~~~~~~~~---~~~~~~~l~--~aDVVI 314 (513)
+.||+|||.|+ |-+|+.++..|.+.|. +|.+++|+..+...+.+... .......+ .+.+.+.+. ..|+|+
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~ 84 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVF 84 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhh
Confidence 47899999997 9999999999999998 49999997654333333221 11111111 222333332 568999
Q ss_pred EcCCCCcc
Q 010322 315 TSTASEAP 322 (513)
Q Consensus 315 ~AT~s~~~ 322 (513)
.+++.+.+
T Consensus 85 ~~aa~~~~ 92 (356)
T d1rkxa_ 85 HMAAQPLV 92 (356)
T ss_dssp ECCSCCCH
T ss_pred hhhccccc
Confidence 98876544
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.03 E-value=0.02 Score=52.19 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=32.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
..+++|+|||+|+.|..+|..|+.+|. +|++++++.
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~ 82 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAE 82 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeecc
Confidence 468999999999999999999999998 499998864
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.02 E-value=0.022 Score=46.67 Aligned_cols=34 Identities=15% Similarity=0.337 Sum_probs=31.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
.++|+|||+|.+|..+|..|...|. +|+++.|.+
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGN 55 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhccc-cceeeehhc
Confidence 6899999999999999999999998 599999863
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=94.01 E-value=0.021 Score=53.60 Aligned_cols=32 Identities=31% Similarity=0.690 Sum_probs=29.8
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
+|+|||+|-+|..+|.+|...|.++|+|++|+
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~ 34 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG 34 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 59999999999999999999998779999986
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.75 E-value=0.035 Score=45.67 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=30.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
..++++|||+|.+|..+|..|...|.+ |+++.|+
T Consensus 19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~-Vtii~~~ 52 (122)
T d1h6va2 19 CPGKTLVVGASYVALECAGFLAGIGLD-VTVMVRS 52 (122)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred CCCeEEEECCCccHHHHHHHHhhcCCe-EEEEEec
Confidence 457899999999999999999999985 9988876
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=93.73 E-value=0.089 Score=49.01 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=32.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeC
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNR 278 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR 278 (513)
.++.|++|+|-|.|.+|..++++|...|++-|.+.+.
T Consensus 32 ~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~ 68 (255)
T d1bgva1 32 DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGP 68 (255)
T ss_dssp CCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEET
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 5789999999999999999999999999976666653
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.73 E-value=0.0076 Score=57.69 Aligned_cols=105 Identities=14% Similarity=0.221 Sum_probs=64.4
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCC----------CeEEEEeCC----HHHHHHH---HHHhCCcceeecccchHH
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGC----------TKMVVVNRS----EERVAAI---CEELNGVEIIYKPLSEML 304 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~----------~~V~v~nRs----~~ra~~l---a~~~g~~~~~~~~~~~~~ 304 (513)
..+.+.+|+|.|+|..|..++..|...+. ++|+++|+. .+|...+ ...+.. ...-....++.
T Consensus 21 k~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~-~~~~~~~~~L~ 99 (294)
T d1pj3a1 21 KPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTH-SAPESIPDTFE 99 (294)
T ss_dssp CCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCB-CCCSSCCSSHH
T ss_pred CCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhc-cccccchhHHH
Confidence 46788999999999999999988765432 469999983 2221000 011100 00000112355
Q ss_pred hhcC--CCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 305 SCAA--DADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 305 ~~l~--~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
++++ +.|++|-+++.+ .+|+++.++.+.. ...+.+++-||.|-
T Consensus 100 e~i~~~kptvliG~S~~~-g~ft~evi~~Ma~----~~~~PIIFaLSNPt 144 (294)
T d1pj3a1 100 DAVNILKPSTIIGVAGAG-RLFTPDVIRAMAS----INERPVIFALSNPT 144 (294)
T ss_dssp HHHHHHCCSEEEECCCSS-CCSCHHHHHHHHH----HCSSCEEEECCSSG
T ss_pred HHHHhcCCceEEEecCCC-CcCCHHHHHHHHh----cCCCcEEEEccCCC
Confidence 5544 788888887765 5678888764321 13457888999884
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=93.73 E-value=0.031 Score=45.45 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
..++++|+|||+|.+|..+|..|...|. +|+++.|.+
T Consensus 19 ~~~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~ 55 (121)
T d1mo9a2 19 YEPGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTE 55 (121)
T ss_dssp SCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred hCCCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccc
Confidence 3468999999999999999999999987 599999864
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.71 E-value=0.024 Score=52.60 Aligned_cols=71 Identities=13% Similarity=0.003 Sum_probs=47.7
Q ss_pred eEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC-CcceeecccchHH-------hhcCCCcEEEEcCC
Q 010322 248 RMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN-GVEIIYKPLSEML-------SCAADADVVFTSTA 318 (513)
Q Consensus 248 ~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g-~~~~~~~~~~~~~-------~~l~~aDVVI~AT~ 318 (513)
+++|.|+ +++|+.+++.|...|+ +|.+++|+.++.+++..... .....+...++.. +.....|++|++.+
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~G~iDiLVnNAg 80 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDI 80 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEECC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhhhCcEEEeccCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 6889998 8899999999999999 59999998877765543211 0012222223322 23457899997655
Q ss_pred C
Q 010322 319 S 319 (513)
Q Consensus 319 s 319 (513)
.
T Consensus 81 ~ 81 (252)
T d1zmta1 81 F 81 (252)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.68 E-value=0.035 Score=57.34 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=32.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
+...+|+|+|+|++|..+++.|...|+.+++++|.+
T Consensus 23 L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d 58 (529)
T d1yova1 23 LESAHVCLINATATGTEILKNLVLPGIGSFTIIDGN 58 (529)
T ss_dssp HHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCS
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 356899999999999999999999999999998763
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=93.68 E-value=0.036 Score=45.30 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=31.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
..++++|||+|.+|.-+|..|...|.+ |+++.++.
T Consensus 21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~-Vtiv~~~~ 55 (119)
T d3lada2 21 VPGKLGVIGAGVIGLELGSVWARLGAE-VTVLEAMD 55 (119)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred CCCeEEEECCChHHHHHHHHHHHcCCc-eEEEEeec
Confidence 458899999999999999999999985 99988763
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=93.65 E-value=0.041 Score=50.70 Aligned_cols=78 Identities=22% Similarity=0.397 Sum_probs=50.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCH---HHHHHHHHHhC--Ccceeecc--c---chHHh---hc---
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSE---ERVAAICEELN--GVEIIYKP--L---SEMLS---CA--- 307 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~---~ra~~la~~~g--~~~~~~~~--~---~~~~~---~l--- 307 (513)
++.+++|.|+ |+||+.+++.|...|+++|+++.|+. +.+.++.+++. +..+.+.. . ++..+ .+
T Consensus 8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~ 87 (259)
T d2fr1a1 8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDD 87 (259)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcccccc
Confidence 5779999997 99999999999999998899999974 23444444331 11222221 1 12222 12
Q ss_pred CCCcEEEEcCCCCcc
Q 010322 308 ADADVVFTSTASEAP 322 (513)
Q Consensus 308 ~~aDVVI~AT~s~~~ 322 (513)
...|.||.+.+....
T Consensus 88 ~~i~~vv~~ag~~~~ 102 (259)
T d2fr1a1 88 VPLSAVFHAAATLDD 102 (259)
T ss_dssp SCEEEEEECCCCCCC
T ss_pred ccccccccccccccc
Confidence 247888888776543
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.64 E-value=0.023 Score=52.85 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=30.2
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHH
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEE 281 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ 281 (513)
+|+|||+|+.|..+|..|...|++ |+|+++.++
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G~~-v~vlE~~~~ 36 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAGID-NVILERQTP 36 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCC-EEEECSSCH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCC-EEEEeCCCC
Confidence 699999999999999999999995 999998753
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=93.64 E-value=0.032 Score=46.60 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=32.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
.+++|+|||+|.+|..+|..|...|. +|+++.+.+
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~ 68 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAA 68 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred cCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeecc
Confidence 57899999999999999999999998 599999864
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=93.58 E-value=0.035 Score=52.10 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=35.2
Q ss_pred CCCCCCeEEEEccc---HHHHHHHHHHHHcCCCeEEEEeCCHHH
Q 010322 242 SSHATARMLVIGAG---KMGKLVIKHLVAKGCTKMVVVNRSEER 282 (513)
Q Consensus 242 ~~l~g~~VlVIGaG---~mG~~ia~~L~~~G~~~V~v~nRs~~r 282 (513)
-++.||+++|.|++ +||+++++.|...|++ |++++|++..
T Consensus 4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~-Vvi~~~~~~~ 46 (297)
T d1d7oa_ 4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAE-ILVGTWVPAL 46 (297)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEEEHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEeCchhh
Confidence 37899999999985 7999999999999995 8999987643
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=93.57 E-value=0.075 Score=49.00 Aligned_cols=73 Identities=21% Similarity=0.354 Sum_probs=48.6
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHH-----HHHHHHHHhCCcceeec-----ccchHHhhcCCCcEEE
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEE-----RVAAICEELNGVEIIYK-----PLSEMLSCAADADVVF 314 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~-----ra~~la~~~g~~~~~~~-----~~~~~~~~l~~aDVVI 314 (513)
.++|||+|+ |-+|+.++..|...|.+ |+++.|+.. +...+ ..+....+.+. ..+.+.+.+.+++.+|
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~-V~~~~R~~~~~~~~~~~~~-~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~ 80 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHP-TYVLFRPEVVSNIDKVQML-LYFKQLGAKLIEASLDDHQRLVDALKQVDVVI 80 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCC-EEEECCSCCSSCHHHHHHH-HHHHTTTCEEECCCSSCHHHHHHHHTTCSEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCE-EEEEECCCcccchhHHHHH-hhhccCCcEEEEeecccchhhhhhccCcchhh
Confidence 467999997 99999999999999975 888888532 22221 12211112222 2234556678999999
Q ss_pred EcCCCC
Q 010322 315 TSTASE 320 (513)
Q Consensus 315 ~AT~s~ 320 (513)
.+.+..
T Consensus 81 ~~~~~~ 86 (312)
T d1qyda_ 81 SALAGG 86 (312)
T ss_dssp ECCCCS
T ss_pred hhhhhc
Confidence 987654
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=93.46 E-value=0.032 Score=53.41 Aligned_cols=35 Identities=26% Similarity=0.475 Sum_probs=30.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCC-CeEEEEeCCH
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGC-TKMVVVNRSE 280 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~-~~V~v~nRs~ 280 (513)
-|+|+|||||+.|..+|..|+..|. .+|+|+.|+.
T Consensus 4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG 39 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 3789999999999999999988765 4799999984
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=93.46 E-value=0.07 Score=49.11 Aligned_cols=71 Identities=23% Similarity=0.359 Sum_probs=46.8
Q ss_pred eEEEEcc-cHHHHHHHHHHHHcCCCeEEEE-eCCHHHHHHHHHHh---CCcceeec--c---cchHH-------hhcCCC
Q 010322 248 RMLVIGA-GKMGKLVIKHLVAKGCTKMVVV-NRSEERVAAICEEL---NGVEIIYK--P---LSEML-------SCAADA 310 (513)
Q Consensus 248 ~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~-nRs~~ra~~la~~~---g~~~~~~~--~---~~~~~-------~~l~~a 310 (513)
-|+|.|+ ++||+.+++.|...|++ |++. .|+.+.++++.+++ +. .+... + .++.. +.....
T Consensus 3 V~lITGas~GIG~a~a~~la~~Ga~-V~i~~~~~~~~~~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (244)
T d1edoa_ 3 VVVVTGASRGIGKAIALSLGKAGCK-VLVNYARSAKAAEEVSKQIEAYGG-QAITFGGDVSKEADVEAMMKTAIDAWGTI 80 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHHTC-EEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 4677787 99999999999999996 7664 67877777766654 32 11111 1 11222 223578
Q ss_pred cEEEEcCCCC
Q 010322 311 DVVFTSTASE 320 (513)
Q Consensus 311 DVVI~AT~s~ 320 (513)
|++|++.+..
T Consensus 81 DiLVnnAg~~ 90 (244)
T d1edoa_ 81 DVVVNNAGIT 90 (244)
T ss_dssp SEEEECCCCC
T ss_pred Cccccccccc
Confidence 9999986553
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=93.45 E-value=0.049 Score=44.09 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=28.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHc---CCCeEEEEeCCH
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAK---GCTKMVVVNRSE 280 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~---G~~~V~v~nRs~ 280 (513)
..++++|||+|.+|..+|..|... |. +|+++.|.+
T Consensus 17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~-~Vtli~~~~ 54 (117)
T d1feca2 17 APKRALCVGGGYISIEFAGIFNAYKARGG-QVDLAYRGD 54 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHSCTTC-EEEEEESSS
T ss_pred cCCeEEEECCChHHHHHHHHhHhhccccc-ccceecccc
Confidence 358999999999999999887765 55 699998853
|
| >d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Pig roundworm (Ascaris suum) [TaxId: 6253]
Probab=93.44 E-value=0.0099 Score=57.10 Aligned_cols=103 Identities=12% Similarity=0.267 Sum_probs=62.6
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHc----C------CCeEEEEeCC----HHHH--HHHHHHhCCcceeecccchHHh
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAK----G------CTKMVVVNRS----EERV--AAICEELNGVEIIYKPLSEMLS 305 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~----G------~~~V~v~nRs----~~ra--~~la~~~g~~~~~~~~~~~~~~ 305 (513)
..+.+.+++|+|+|..|..++..|... | .++|+++|+. .+|. ......|.. ...+..++.+
T Consensus 21 k~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d~~~~k~~~a~---~~~~~~~l~~ 97 (308)
T d1o0sa1 21 KLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAK---DMPETTSILE 97 (308)
T ss_dssp CCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTCB---SSCCCCCHHH
T ss_pred CCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcccCHHHHHHHH---hcccCCcHHH
Confidence 567889999999999999998887754 3 3469999973 1221 000011110 0111223333
Q ss_pred hcC--CCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccCCC
Q 010322 306 CAA--DADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPR 352 (513)
Q Consensus 306 ~l~--~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlavPr 352 (513)
.++ ..+++|-+++.+ .+|+++.++.+.. ...+.+++-||.|-
T Consensus 98 ~i~~~kptvliG~s~~~-g~ft~evv~~Ma~----~~~~PIIFaLSNPt 141 (308)
T d1o0sa1 98 VIRAARPGALIGASTVR-GAFNEEVIRAMAE----INERPIIFALSNPT 141 (308)
T ss_dssp HHHHHCCSEEEECSSCT-TCSCHHHHHHHHH----HCSSCEEEECCSSG
T ss_pred HHhccccccEEeccccc-CCCCHHHHHHHHh----hCCCcEEEEccCCC
Confidence 333 357788777665 4678888875432 13457888999884
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.44 E-value=0.033 Score=45.90 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=31.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
.++|+|||+|.+|..+|..|...|. +|+++.|++
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~ 55 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD 55 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CCEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecc
Confidence 4799999999999999999999998 599999963
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.44 E-value=0.032 Score=52.95 Aligned_cols=72 Identities=15% Similarity=0.233 Sum_probs=45.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCC-HHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCC
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRS-EERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs-~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
|+|+|.|+ |-+|+.++..|...|.. |+++++. ..+...+-.......+.+...+.......++|+||.+.+.
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~VihlAa~ 75 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHE-VTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASP 75 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEECccc
Confidence 78999999 99999999999999985 8877752 2222111111111122333333344455689999987654
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.43 E-value=2.7 Score=38.07 Aligned_cols=97 Identities=14% Similarity=0.228 Sum_probs=61.2
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHH-cCCCeEEEEeCC----------HHHHHHHHHHhCCc----ceeecccchHHhh
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRS----------EERVAAICEELNGV----EIIYKPLSEMLSC 306 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~-~G~~~V~v~nRs----------~~ra~~la~~~g~~----~~~~~~~~~~~~~ 306 (513)
.++.|++|+|-|.|.+|..++++|.. .|++-|.+.+.+ .+...+...+.+.. .....+.+++..
T Consensus 28 ~~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~- 106 (239)
T d1gtma1 28 DTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLE- 106 (239)
T ss_dssp SCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEECHHHHHH-
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeeeccccccc-
Confidence 35899999999999999999999975 588766666653 33333433333321 012222233322
Q ss_pred cCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEeccC
Q 010322 307 AADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISV 350 (513)
Q Consensus 307 l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDlav 350 (513)
..|||+|-|... ..|+.+.+..+ +-.+++.-+.
T Consensus 107 -~~~DIl~PcA~~--~~I~~~~a~~i--------~ak~I~e~AN 139 (239)
T d1gtma1 107 -LEVDVLAPAAIE--EVITKKNADNI--------KAKIVAEVAN 139 (239)
T ss_dssp -SCCSEEEECSCS--CCBCTTGGGGC--------CCSEEECCSS
T ss_pred -ccccEEeecccc--ccccHHHHHhc--------cccEEEecCC
Confidence 589999998765 34566666554 2256777663
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.22 E-value=0.036 Score=50.98 Aligned_cols=42 Identities=17% Similarity=0.311 Sum_probs=34.6
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHH---cCCCeEEEEeCCHHHHHHHHH
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVA---KGCTKMVVVNRSEERVAAICE 288 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~---~G~~~V~v~nRs~~ra~~la~ 288 (513)
.|+|+|.|+ ++||+.+++.|.. .|+ +|+++.|+.++++++.+
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~-~V~~~~r~~~~~~~~~~ 47 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELED 47 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH
Confidence 378999999 9999999999874 466 59999999988766543
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.21 E-value=0.03 Score=46.12 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=31.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
..++++|||+|.+|.-+|..+...|. +|+++.|++
T Consensus 24 ~p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~ 58 (123)
T d1dxla2 24 IPKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFAS 58 (123)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred cCCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEcc
Confidence 45899999999999999999999998 599999864
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.16 E-value=0.02 Score=51.39 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=29.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCC------eEEEEeCCH
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCT------KMVVVNRSE 280 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~------~V~v~nRs~ 280 (513)
.+|+|||+|+.|..+|.+|..+|.. +|+|+++.+
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~ 42 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP 42 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence 5899999999999999999998842 699999864
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=93.13 E-value=0.13 Score=47.04 Aligned_cols=42 Identities=24% Similarity=0.433 Sum_probs=33.4
Q ss_pred eEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHH-HHHHHHHh
Q 010322 248 RMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEER-VAAICEEL 290 (513)
Q Consensus 248 ~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~r-a~~la~~~ 290 (513)
.++|.|+ ++||+++++.|...|+ +|++++|+.++ ++++++++
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~~~~~~~~~~~~ 46 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAEL 46 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHHHH
Confidence 4678888 8899999999999999 59999988543 45555554
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=93.11 E-value=0.047 Score=50.12 Aligned_cols=40 Identities=13% Similarity=0.236 Sum_probs=34.1
Q ss_pred CCCCCeEEEEccc---HHHHHHHHHHHHcCCCeEEEEeCCHHHH
Q 010322 243 SHATARMLVIGAG---KMGKLVIKHLVAKGCTKMVVVNRSEERV 283 (513)
Q Consensus 243 ~l~g~~VlVIGaG---~mG~~ia~~L~~~G~~~V~v~nRs~~ra 283 (513)
-+.||+|+|.|++ ++|.++++.|...|++ |++++|+.+..
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~-V~i~~~~~~~~ 44 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQNDKLK 44 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEESSTTTH
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCCE-EEEEeCCHHHH
Confidence 4689999999984 6999999999999996 99999985533
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=93.10 E-value=0.038 Score=52.86 Aligned_cols=34 Identities=24% Similarity=0.628 Sum_probs=31.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
.++|+|||||..|..+|..|...|. +|+|+.++.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~ 35 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRD 35 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCC
Confidence 5899999999999999999999987 599999874
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=92.93 E-value=0.1 Score=42.76 Aligned_cols=71 Identities=11% Similarity=0.159 Sum_probs=48.5
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeeccc---chHHh-hcCCCcEEEEcCCCCcc
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPL---SEMLS-CAADADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~---~~~~~-~l~~aDVVI~AT~s~~~ 322 (513)
+.++|+|.|.+|+.+++.|... .|.+++.++++.+.+.. .+. .+..-+. +.+.+ -+..|+.+|.+|+....
T Consensus 1 kHivI~G~g~~g~~l~~~L~~~---~i~vi~~d~~~~~~~~~-~~~-~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~ 75 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELRGS---EVFVLAEDENVRKKVLR-SGA-NFVHGDPTRVSDLEKANVRGARAVIVNLESDSE 75 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSCGG---GEEEEESCTTHHHHHHH-TTC-EEEESCTTSHHHHHHTTCTTCSEEEECCSSHHH
T ss_pred CEEEEECCCHHHHHHHHHHcCC---CCEEEEcchHHHHHHHh-cCc-cccccccCCHHHHHHhhhhcCcEEEEeccchhh
Confidence 4689999999999999999643 37888999888866543 332 1111111 12322 26799999999987543
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=92.86 E-value=0.019 Score=49.27 Aligned_cols=94 Identities=17% Similarity=0.244 Sum_probs=51.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHc---CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAK---GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~---G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
++|.|+|| |-+|+.+++.|..+ ...+++....+....... .++..........+. ..+.++|++|.|+++...
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~--~~~~~~~~~~~~~~~-~~~~~~DivF~a~~~~~s 78 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAP--SFGGTTGTLQDAFDL-EALKALDIIVTCQGGDYT 78 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCC--GGGTCCCBCEETTCH-HHHHTCSEEEECSCHHHH
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccc--cccCCceeeecccch-hhhhcCcEEEEecCchHH
Confidence 58999999 99999999877654 345676665542211010 011111111111121 235689999999988643
Q ss_pred CCChhhhhcCCchhhhcCCcEEEEeccC
Q 010322 323 LFLKDHVQDLPPVEAAVGGLRLFIDISV 350 (513)
Q Consensus 323 vi~~~~l~~~~~~~~~~~g~~viiDlav 350 (513)
- +...... ..+.+.++||.+-
T Consensus 79 ~---~~~~~~~----~~g~~~~VID~Ss 99 (146)
T d1t4ba1 79 N---EIYPKLR----ESGWQGYWIDAAS 99 (146)
T ss_dssp H---HHHHHHH----HTTCCCEEEECSS
T ss_pred H---HhhHHHH----hcCCCeecccCCc
Confidence 1 1111111 0233468999974
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.81 E-value=0.043 Score=49.29 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=28.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHc--CCCeEEEEeCCH
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAK--GCTKMVVVNRSE 280 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~--G~~~V~v~nRs~ 280 (513)
.+|+|||+|+.|..+|.+|... |+ +|+|+++.+
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~-~V~v~e~~~ 36 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQL 36 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCC
Confidence 3799999999999999999876 44 699999874
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.79 E-value=0.043 Score=47.89 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=28.8
Q ss_pred EEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 249 MLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 249 VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
|+|||+|..|..+|..|...|. +|+|+++++
T Consensus 8 viViGaG~~Gl~~A~~La~~G~-~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLGTGITECILSGLLSVDGK-KVLHIDKQD 38 (297)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCC-CEEEEcCCC
Confidence 8999999999999999999997 499999974
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.74 E-value=0.059 Score=49.10 Aligned_cols=34 Identities=21% Similarity=0.455 Sum_probs=30.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
...+|+|||+|..|..+|..|...|. +|+|+..+
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa~ 37 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEAR 37 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCC
Confidence 45789999999999999999999998 59999876
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.67 E-value=0.067 Score=45.81 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=32.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
.+++|+|||+|..|.-+|..+...|++.|+++.|.+
T Consensus 44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 467899999999999999999999999999988753
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.63 E-value=0.35 Score=45.65 Aligned_cols=96 Identities=11% Similarity=0.154 Sum_probs=60.8
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeC----------CHHHHHHHHHHhCCcc---eeecccchHHhhcC
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNR----------SEERVAAICEELNGVE---IIYKPLSEMLSCAA 308 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR----------s~~ra~~la~~~g~~~---~~~~~~~~~~~~l~ 308 (513)
.++.|++|+|-|.|.+|..+++.|...|++-|.+.+. +.+.+.++....+... ....+.+++. -.
T Consensus 32 ~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~~ 109 (293)
T d1hwxa1 32 PGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSIL--EV 109 (293)
T ss_dssp SSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGG--GC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccc--cC
Confidence 4689999999999999999999999999975556543 4455555444433210 0001112221 14
Q ss_pred CCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 309 DADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 309 ~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
.|||+|-|.-. ..|+.+....+ +-.+++.-|
T Consensus 110 ~~DIliPaA~~--~~I~~~~a~~l--------~ak~I~EgA 140 (293)
T d1hwxa1 110 DCDILIPAASE--KQLTKSNAPRV--------KAKIIAEGA 140 (293)
T ss_dssp CCSEEEECSSS--SCBCTTTGGGC--------CCSEEECCS
T ss_pred CccEEeecccc--ccccHHHHHHH--------hhCEEeccC
Confidence 89999998544 34566665544 225777666
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=92.62 E-value=0.049 Score=49.92 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=28.7
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
.|+|||+|.+|..+|.+|...|. +|+|+++.
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~ 36 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENK-NTALFESG 36 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence 39999999999999999999997 59999986
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=92.58 E-value=0.073 Score=49.30 Aligned_cols=41 Identities=29% Similarity=0.489 Sum_probs=30.9
Q ss_pred EEEEcc-cHHHHHHHHHHHHcCCCeEEEE-eCCHHHHHHHHHHh
Q 010322 249 MLVIGA-GKMGKLVIKHLVAKGCTKMVVV-NRSEERVAAICEEL 290 (513)
Q Consensus 249 VlVIGa-G~mG~~ia~~L~~~G~~~V~v~-nRs~~ra~~la~~~ 290 (513)
++|.|+ ++||+++++.|...|++ |+++ .|+.+.++++.+++
T Consensus 5 AlITGas~GIG~aiA~~la~~Ga~-V~i~~~~~~~~~~~~~~~l 47 (284)
T d1e7wa_ 5 ALVTGAAKRLGRSIAEGLHAEGYA-VCLHYHRSAAEANALSATL 47 (284)
T ss_dssp EEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCCHHHHHHHHHHH
Confidence 345577 89999999999999996 7665 55666676666654
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=92.54 E-value=0.052 Score=44.89 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=31.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
..++++|||+|.+|.-+|..+...|. +|+++.+.+
T Consensus 25 ~p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~~ 59 (125)
T d1ojta2 25 VPGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMMD 59 (125)
T ss_dssp CCSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred cCCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEeec
Confidence 45899999999999999999999998 599998864
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.44 E-value=0.062 Score=43.64 Aligned_cols=36 Identities=28% Similarity=0.558 Sum_probs=32.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHH
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEE 281 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ 281 (513)
.+.+|+|+|+|..|+.++..+...|++ +.+++++++
T Consensus 10 ~~~kigIlGgGQL~rMla~aA~~lG~~-v~v~d~~~~ 45 (111)
T d1kjqa2 10 AATRVMLLGSGELGKEVAIECQRLGVE-VIAVDRYAD 45 (111)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCE-EEEEESSTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHCCCE-EEEEcCCCC
Confidence 456799999999999999999999995 899998865
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=92.22 E-value=0.13 Score=46.77 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=48.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHH------HHHHHHHHhCCcceeec--cc---chHHhhcCCCcE
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEE------RVAAICEELNGVEIIYK--PL---SEMLSCAADADV 312 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~------ra~~la~~~g~~~~~~~--~~---~~~~~~l~~aDV 312 (513)
+.++|||+|+ |-+|+.++..|...|.+ |++++|+.. +...+..... ..+.+. +. ......+.++|.
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~-V~~l~R~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~ 79 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHP-TFLLVRESTASSNSEKAQLLESFKA-SGANIVHGSIDDHASLVEAVKNVDV 79 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCC-EEEECCCCCTTTTHHHHHHHHHHHT-TTCEEECCCTTCHHHHHHHHHTCSE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCe-EEEEECCCccccchhHHHHHHhhcc-CCcEEEEeecccchhhhhhhhhcee
Confidence 3578999998 99999999999999985 888888532 2222221111 111222 11 223445678899
Q ss_pred EEEcCCCCcc
Q 010322 313 VFTSTASEAP 322 (513)
Q Consensus 313 VI~AT~s~~~ 322 (513)
||.+.+....
T Consensus 80 vi~~~~~~~~ 89 (307)
T d1qyca_ 80 VISTVGSLQI 89 (307)
T ss_dssp EEECCCGGGS
T ss_pred eeeccccccc
Confidence 9888765443
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=92.17 E-value=0.12 Score=49.03 Aligned_cols=72 Identities=19% Similarity=0.317 Sum_probs=45.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCC----HHHHHHHHHHhCCcceee-----cccchHHhhcC--CCcEEE
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRS----EERVAAICEELNGVEIIY-----KPLSEMLSCAA--DADVVF 314 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs----~~ra~~la~~~g~~~~~~-----~~~~~~~~~l~--~aDVVI 314 (513)
++|||+|+ |-+|+.+++.|...|. +|++++|. ......+. .+....+.+ ...+.+.+.+. ++|+||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~-~V~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vi 78 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGH-DVIILDNLCNSKRSVLPVIE-RLGGKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTTHHHHHH-HHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcchhhHHHHH-hhcCCCCEEEEeecCCHHHHHHHHhccCCCEEE
Confidence 47999999 9999999999999997 48888752 12221221 221111222 12234445554 789999
Q ss_pred EcCCCC
Q 010322 315 TSTASE 320 (513)
Q Consensus 315 ~AT~s~ 320 (513)
.+.+.+
T Consensus 79 HlAa~~ 84 (338)
T d1udca_ 79 HFAGLK 84 (338)
T ss_dssp ECCSCC
T ss_pred ECCCcc
Confidence 876543
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.11 E-value=0.081 Score=47.72 Aligned_cols=37 Identities=32% Similarity=0.531 Sum_probs=33.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHH--------------------HcCCCeEEEEeCC
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLV--------------------AKGCTKMVVVNRS 279 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~--------------------~~G~~~V~v~nRs 279 (513)
++.|++|+|||.|..|.-+|+.|. ..|+++|+++.|.
T Consensus 36 ~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RR 92 (216)
T d1lqta1 36 DLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRR 92 (216)
T ss_dssp CCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSS
T ss_pred cccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEEC
Confidence 567999999999999999999887 5799999999985
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=91.93 E-value=0.054 Score=48.88 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=31.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHH
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEER 282 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~r 282 (513)
+|+++|.|+ ++||+.+++.|...|++ |++++|+.+.
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga~-V~i~~~~~~~ 37 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGYR-VVVLDLRREG 37 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEESSCCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCccc
Confidence 478899998 99999999999999995 9999998653
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.88 E-value=0.083 Score=47.97 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=34.5
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHH--------------------cCCCeEEEEeCCH
Q 010322 242 SSHATARMLVIGAGKMGKLVIKHLVA--------------------KGCTKMVVVNRSE 280 (513)
Q Consensus 242 ~~l~g~~VlVIGaG~mG~~ia~~L~~--------------------~G~~~V~v~nRs~ 280 (513)
.++.|++|+|||.|.+|.-+|+.|.. .|+++|+++.|..
T Consensus 35 ~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg 93 (225)
T d1cjca1 35 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG 93 (225)
T ss_dssp CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred ccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence 35679999999999999999998887 4899999999864
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=91.86 E-value=0.096 Score=46.01 Aligned_cols=90 Identities=22% Similarity=0.245 Sum_probs=50.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeE-EEEeCCHHHHHHHHHHhCCc--ceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKM-VVVNRSEERVAAICEELNGV--EIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V-~v~nRs~~ra~~la~~~g~~--~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.+|.|+|| |-.|+.+++.|..+..-+| .++.++... +.+..-+... ...+.. .+..+...++|+||.|++....
T Consensus 2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG-~~i~~~~p~~~~~~~~~~-~~~~~~~~~~dvvf~a~p~~~s 79 (176)
T d1vkna1 2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAG-KKLEEIFPSTLENSILSE-FDPEKVSKNCDVLFTALPAGAS 79 (176)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTT-SBHHHHCGGGCCCCBCBC-CCHHHHHHHCSEEEECCSTTHH
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCC-CcccccCchhhccccccc-cCHhHhccccceEEEccccHHH
Confidence 37999999 9999999999988743333 344443221 1222222110 111111 2223333579999999999754
Q ss_pred CCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 323 LFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 323 vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
.+.... .....+||+|
T Consensus 80 ---~~~~~~--------~~~~~VIDlS 95 (176)
T d1vkna1 80 ---YDLVRE--------LKGVKIIDLG 95 (176)
T ss_dssp ---HHHHTT--------CCSCEEEESS
T ss_pred ---HHHHHh--------hccceEEecC
Confidence 222221 1235689997
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.86 E-value=0.073 Score=48.51 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=31.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHH
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEE 281 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ 281 (513)
+||+|+|.|+ |++|+.+++.|...|++ |.+++++..
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~-V~~~~~~~~ 37 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWW-VASIDVVEN 37 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCcc
Confidence 4899999999 99999999999999995 888888643
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.75 E-value=0.13 Score=42.75 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=27.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHH----HcCCCeEEEEeCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLV----AKGCTKMVVVNRS 279 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~----~~G~~~V~v~nRs 279 (513)
.+++++|||+|.+|..++..|. ..|. +|+++.+.
T Consensus 36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~~ 73 (137)
T d1m6ia2 36 EVKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPE 73 (137)
T ss_dssp HCSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred cCCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEeccc
Confidence 4689999999999998888774 4576 58888774
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=91.67 E-value=0.046 Score=52.05 Aligned_cols=72 Identities=17% Similarity=0.298 Sum_probs=47.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeec-----ccchHHh-hcCCCcEEEEcCCC
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYK-----PLSEMLS-CAADADVVFTSTAS 319 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~-----~~~~~~~-~l~~aDVVI~AT~s 319 (513)
++|||+|+ |-+|+.+++.|...|..+|+++++...+...+... . .+.+. ..+++.+ ...++|+||-+.+.
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~-~--~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~ 77 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH-P--HFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI 77 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTC-T--TEEEEECCTTTCSHHHHHHHHHCSEEEECBCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccC-C--CeEEEECccCChHHHHHHHHhCCCcccccccc
Confidence 47999999 99999999999999965788887754433222211 1 12221 1223332 45689999998776
Q ss_pred Cc
Q 010322 320 EA 321 (513)
Q Consensus 320 ~~ 321 (513)
..
T Consensus 78 ~~ 79 (342)
T d2blla1 78 AT 79 (342)
T ss_dssp CC
T ss_pred cc
Confidence 44
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=91.65 E-value=0.069 Score=48.17 Aligned_cols=31 Identities=19% Similarity=0.499 Sum_probs=28.2
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
-|+|||+|+.|..+|..|...|.+ |+|++++
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~~-V~liEk~ 34 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGAN-VLLLDKG 34 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence 389999999999999999999985 9999875
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.42 E-value=0.1 Score=46.01 Aligned_cols=69 Identities=20% Similarity=0.342 Sum_probs=44.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHHhCCcceeecccchHHhh-cCCCcEEEEcCCCC
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCT-KMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSC-AADADVVFTSTASE 320 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~-~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~-l~~aDVVI~AT~s~ 320 (513)
.|+|+|+|+ |-+|+.+++.|...|.. +|++..|++... .........++.+.... ....|+||.|.+..
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~------~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~ 73 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE------HPRLDNPVGPLAELLPQLDGSIDTAFCCLGTT 73 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC------CTTEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh------cccccccccchhhhhhccccchheeeeeeeee
Confidence 489999999 99999999999999863 577677653211 00000111222233333 34689999998765
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=91.30 E-value=0.078 Score=48.41 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=29.2
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
.|+|||+|+.|..+|..|...|.+ |+|+++++
T Consensus 6 DViIIGaG~aGl~aA~~la~~G~~-V~vlEk~~ 37 (253)
T d2gqfa1 6 ENIIIGAGAAGLFCAAQLAKLGKS-VTVFDNGK 37 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCC-EEEECSSS
T ss_pred cEEEECcCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence 499999999999999999999985 99999874
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=91.29 E-value=0.067 Score=48.88 Aligned_cols=60 Identities=20% Similarity=0.328 Sum_probs=42.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCCc
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASEA 321 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~~ 321 (513)
++|||+|+ |-+|+.+++.|...|.+ |+.++|+.- .+...+++.+.+. ..|+||.|.+...
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~-Vi~~~r~~~--------------D~~d~~~~~~~l~~~~~d~vih~a~~~~ 64 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVE-VIPTDVQDL--------------DITNVLAVNKFFNEKKPNVVINCAAHTA 64 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEE-EEEECTTTC--------------CTTCHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCE-EEEeechhc--------------cCCCHHHHHHHHHHcCCCEEEeeccccc
Confidence 47999998 99999999999999984 888888631 1112223333332 5699999876654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.26 E-value=0.047 Score=52.47 Aligned_cols=74 Identities=16% Similarity=0.269 Sum_probs=48.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecc---cchHHhhcCCCcEEEEcCCCC
Q 010322 245 ATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKP---LSEMLSCAADADVVFTSTASE 320 (513)
Q Consensus 245 ~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~---~~~~~~~l~~aDVVI~AT~s~ 320 (513)
.+++|||+|+ |-+|+.++..|...|. +|+++++..... .............+ .+++...+.++|.||.+.+..
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~~~ 90 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNEH--MTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADM 90 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCSS--SCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCCccc--hhhhcccCcEEEeechhHHHHHHHhhcCCeEeeccccc
Confidence 5889999998 9999999999999998 588887643211 01111111122222 234455567999999887554
Q ss_pred c
Q 010322 321 A 321 (513)
Q Consensus 321 ~ 321 (513)
.
T Consensus 91 ~ 91 (363)
T d2c5aa1 91 G 91 (363)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=91.22 E-value=0.052 Score=41.34 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=29.8
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
++|.|+|+|..|+.++......|++ +.+.+.+.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~-v~vldp~~ 34 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIA-VWPVGLDA 34 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEE-EEEECTTS
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCE-EEEEcCCC
Confidence 6899999999999999999999995 88888764
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=90.93 E-value=0.082 Score=50.17 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=30.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
..-.|+|||||..|..++.+|+..|.. ++|++++
T Consensus 6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~-v~i~Ek~ 39 (298)
T d1w4xa1 6 EEVDVLVVGAGFSGLYALYRLRELGRS-VHVIETA 39 (298)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCC-EEEEEcC
Confidence 455799999999999999999999995 8999875
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.84 E-value=0.1 Score=48.40 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=28.5
Q ss_pred EEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 249 MLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 249 VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
|+|||+|..|..+|..|...|. +|+|++++.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence 8999999999999999999998 599999863
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=90.83 E-value=0.1 Score=50.26 Aligned_cols=74 Identities=22% Similarity=0.320 Sum_probs=43.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCH-----HHHHHHHHHhC--Ccceee-----cccchHHhhcC--CCc
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSE-----ERVAAICEELN--GVEIIY-----KPLSEMLSCAA--DAD 311 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~-----~ra~~la~~~g--~~~~~~-----~~~~~~~~~l~--~aD 311 (513)
|.|||.|+ |-+|+.++..|...|. +|++++|.. .+...+..... ...+.+ ...+++.+.+. ..|
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence 67889996 9999999999999997 599999843 23322222110 001122 22334445554 459
Q ss_pred EEEEcCCCCc
Q 010322 312 VVFTSTASEA 321 (513)
Q Consensus 312 VVI~AT~s~~ 321 (513)
+||.+.+..+
T Consensus 81 ~v~h~aa~~~ 90 (357)
T d1db3a_ 81 EVYNLGAMSH 90 (357)
T ss_dssp EEEECCCCCT
T ss_pred EEEEeecccc
Confidence 9999976543
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=90.56 E-value=0.11 Score=45.82 Aligned_cols=31 Identities=16% Similarity=0.349 Sum_probs=27.8
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
-|+|||+|+.|..+|.++...|.+ |+|+++.
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G~k-V~vie~~ 35 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLGFK-TTCIEKR 35 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCC-EEEEECS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCc-EEEEEec
Confidence 489999999999999999999985 8888764
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=90.54 E-value=0.48 Score=40.24 Aligned_cols=71 Identities=21% Similarity=0.299 Sum_probs=51.5
Q ss_pred CCCCeEEEEcc--cHHHHHHHHHHHHcCCCeEEEEeCCH--------HHHHHHHHHhCCcceeecccchHHhhcCCCcEE
Q 010322 244 HATARMLVIGA--GKMGKLVIKHLVAKGCTKMVVVNRSE--------ERVAAICEELNGVEIIYKPLSEMLSCAADADVV 313 (513)
Q Consensus 244 l~g~~VlVIGa--G~mG~~ia~~L~~~G~~~V~v~nRs~--------~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVV 313 (513)
+.|.+|+++|= ..+....+..+...|+. ++++.... ..+..++...++ .+...+++.+++.++|+|
T Consensus 1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~-i~~~~P~~~~~~~~~~~~~~~~~~~~~~---~i~~~~d~~~ai~~aDvi 76 (161)
T d1vlva2 1 LKGVKVVFMGDTRNNVATSLMIACAKMGMN-FVACGPEELKPRSDVFKRCQEIVKETDG---SVSFTSNLEEALAGADVV 76 (161)
T ss_dssp STTCEEEEESCTTSHHHHHHHHHHHHTTCE-EEEESCGGGCCCHHHHHHHHHHHHHHCC---EEEEESCHHHHHTTCSEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHHHHHcCCE-EEEecchhhhhhhhHHHHHHHHHhhcCC---ceEEEecHHHhhhhhhhe
Confidence 46899999993 57899999999999985 88888742 122344444443 334456788889999999
Q ss_pred EEcCC
Q 010322 314 FTSTA 318 (513)
Q Consensus 314 I~AT~ 318 (513)
...+=
T Consensus 77 yt~~~ 81 (161)
T d1vlva2 77 YTDVW 81 (161)
T ss_dssp EECCC
T ss_pred eccce
Confidence 98653
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.41 E-value=0.16 Score=49.24 Aligned_cols=31 Identities=32% Similarity=0.518 Sum_probs=27.6
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEe
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVN 277 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~n 277 (513)
|++|||.|+ |-+|..+++.|...|.+ |+++|
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~-V~~iD 32 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYE-VCIVD 32 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEe
Confidence 689999999 99999999999999974 88876
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=90.39 E-value=0.098 Score=47.45 Aligned_cols=35 Identities=20% Similarity=0.544 Sum_probs=31.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHH
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEE 281 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ 281 (513)
+.+|+|.|+ |+||+++++.|...|++ |++++|+.+
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G~~-V~~~~~~~~ 37 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNGYT-VLNIDLSAN 37 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCch
Confidence 457999999 99999999999999985 999999864
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=90.34 E-value=0.1 Score=44.63 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=26.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEE
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVV 276 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~ 276 (513)
.+++|+|||+|++|..++..|...|.+ ++++
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~-v~v~ 32 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWE-GNIR 32 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCC-SEEE
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCc-eEEE
Confidence 468999999999999999999999875 4443
|
| >d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.32 E-value=0.0058 Score=54.96 Aligned_cols=30 Identities=10% Similarity=0.303 Sum_probs=27.3
Q ss_pred HhcCCceeeeeeeeccCCCCcccCcchhhc
Q 010322 152 LLYNKDATQHLFEVSAGLDSLVLGEGQILA 181 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGldS~vvGE~qIlg 181 (513)
...|||+++.+.+|+++++.+.+|++.+..
T Consensus 58 ~i~GHE~~G~V~~vG~~v~~~~vGDrVv~~ 87 (194)
T d1f8fa1 58 AVLGHEGSGIIEAIGPNVTELQVGDHVVLS 87 (194)
T ss_dssp BCCCCEEEEEEEEECTTCCSCCTTCEEEEC
T ss_pred cccccceEEEeeecCccceeEccCceeeee
Confidence 468999999999999999999999998764
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.27 E-value=0.1 Score=49.15 Aligned_cols=32 Identities=19% Similarity=0.475 Sum_probs=28.9
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
.|+|||||..|..+|..|...|. +|+|+.++.
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~~ 34 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKRN 34 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTC-CEEEECSSS
T ss_pred cEEEECCcHHHHHHHHHHHhCCC-cEEEEECCC
Confidence 58999999999999999999997 599999874
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=90.19 E-value=0.12 Score=47.32 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=28.0
Q ss_pred EEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 249 MLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 249 VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
|+|||+|-+|..+|.+|..+|.+ |+|+++.
T Consensus 6 vvIIGaGi~Gls~A~~La~~G~~-V~viE~~ 35 (281)
T d2gf3a1 6 VIVVGAGSMGMAAGYQLAKQGVK-TLLVDAF 35 (281)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence 89999999999999999999985 9999875
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=90.14 E-value=0.22 Score=41.26 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=24.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEe
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVN 277 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~n 277 (513)
.+|+|+|+ |.||+.++..+...|..-+..++
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id 32 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVD 32 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEEC
Confidence 37999997 99999999998888875333333
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=90.13 E-value=0.074 Score=46.29 Aligned_cols=33 Identities=15% Similarity=0.300 Sum_probs=29.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeC
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNR 278 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR 278 (513)
+++.|+|||+|+.|...|.+|...|.+ ++++.+
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~~-v~iie~ 36 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANLQ-PVLITG 36 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCC-CEEECC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCc-eEEEEe
Confidence 457899999999999999999999986 777765
|
| >d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.06 E-value=0.0089 Score=52.51 Aligned_cols=92 Identities=12% Similarity=0.107 Sum_probs=62.5
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH----------HHHHHHhHhcCcccchhhHHHHHHHhhCc-c-c---c--
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV----------KQVVKVGQGVVGFGRNISGLFKHAISVGK-R-V---R-- 215 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv----------k~A~~~a~~~~~~g~~L~~lf~~ai~v~k-~-V---r-- 215 (513)
..|||+++.+.++++++....+|+..+.... ..-++.|......|...+|.|++++.++. + + .
T Consensus 65 v~GhE~~G~V~~~g~~v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~~g~~~~G~~aey~~vp~~~~~~~~~~~ 144 (177)
T d1jvba1 65 TLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRRV 144 (177)
T ss_dssp ECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEECSSS
T ss_pred cccceEEEEEeeeccCccccccCceEeeeeccccccccccccccccccCCcceeeeccccccccEEEEEhHHeEEECCCC
Confidence 4799999999999999999999998875321 12344555566667777888988877753 1 1 1
Q ss_pred --cccc-ccCCCchHHHHHHHHHHhhCCCCCCCCCeEEE
Q 010322 216 --TETN-IAAGAVSVSSAAVELALMKLPESSHATARMLV 251 (513)
Q Consensus 216 --~et~-i~~~~~Sva~~Av~la~~~~~~~~l~g~~VlV 251 (513)
.+.. +..++.++++++++.+ ...|++|||
T Consensus 145 ~~~~~a~~~~~~~~~a~~~~~~~-------~~~G~~VlI 176 (177)
T d1jvba1 145 KPMITKTMKLEEANEAIDNLENF-------KAIGRQVLI 176 (177)
T ss_dssp CCCCEEEEEGGGHHHHHHHHHTT-------CCCSEEEEE
T ss_pred ChHHHHHHHHHHHHHHHHHHHhh-------cccCCceEC
Confidence 1222 2235777888776643 346888886
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=90.01 E-value=0.13 Score=45.41 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=27.7
Q ss_pred EEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 249 MLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 249 VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
|+|||+|+.|..+|..+...|.+ |.++++.
T Consensus 5 vvVIG~G~aG~~aA~~a~~~G~k-V~iiE~~ 34 (217)
T d1gesa1 5 YIAIGGGSGGIASINRAAMYGQK-CALIEAK 34 (217)
T ss_dssp EEEECCSHHHHHHHHHHHTTTCC-EEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCCE-EEEEecc
Confidence 89999999999999999999985 9999875
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=89.98 E-value=0.2 Score=43.84 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=44.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCCCeEE-EEeCCHHHHHHHHHHhCCc-cee-ecccchHHhhcCCCcEEEEcCCCCc
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKGCTKMV-VVNRSEERVAAICEELNGV-EII-YKPLSEMLSCAADADVVFTSTASEA 321 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~-v~nRs~~ra~~la~~~g~~-~~~-~~~~~~~~~~l~~aDVVI~AT~s~~ 321 (513)
.-+|.|+|+ |-.|+.+++.|..+..-+|. +++++.. ...+.+.+... ... ............++|+||.|++...
T Consensus 5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~a-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~ 83 (183)
T d2cvoa1 5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKA-GEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGT 83 (183)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTT-TSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSH
T ss_pred ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccC-CCccccccccccccccccchhhhhhhhcccceeeeccccch
Confidence 457999999 99999999999987543444 3343321 11233322210 000 0111122233568999999999875
Q ss_pred c
Q 010322 322 P 322 (513)
Q Consensus 322 ~ 322 (513)
.
T Consensus 84 s 84 (183)
T d2cvoa1 84 T 84 (183)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=89.93 E-value=0.17 Score=40.72 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=30.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCC--eEEEEeCCH
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAKGCT--KMVVVNRSE 280 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~G~~--~V~v~nRs~ 280 (513)
.+++++|||+|.+|..+|..|...|.+ +|+++.|.+
T Consensus 19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~ 56 (117)
T d1aoga2 19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE 56 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence 458999999999999999888877643 699998864
|
| >d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.84 E-value=0.013 Score=51.24 Aligned_cols=93 Identities=8% Similarity=0.084 Sum_probs=58.2
Q ss_pred hcCCceeeeeeeeccCCCCcccCcchhhchH-----------HHHHHHhHhcCcccchhhHHHHHHHhhCc--------c
Q 010322 153 LYNKDATQHLFEVSAGLDSLVLGEGQILAQV-----------KQVVKVGQGVVGFGRNISGLFKHAISVGK--------R 213 (513)
Q Consensus 153 ~~G~eav~hlf~V~sGldS~vvGE~qIlgQv-----------k~A~~~a~~~~~~g~~L~~lf~~ai~v~k--------~ 213 (513)
..|||+++.+.+++++++...+|+..+.... .+.+..|......|...++.|++++.++. .
T Consensus 63 i~GhE~~G~V~~~G~~v~~~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~~G~~~~gg~aey~~v~~~~~~~iPd~ 142 (175)
T d1llua1 63 IPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGGYAEYVLADPNYVGILPKN 142 (175)
T ss_dssp CCCSCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTT
T ss_pred CCCCcceEEEEEeCCCccccccCCEEEeccccccCCccccccCCcccccccccccccccccccceEEEechHHEEECCCC
Confidence 4799999999999999999999998775321 11234455555567677788887766654 2
Q ss_pred ccccccc-cCCCchHHHHHHHHHHhhCCCCCCCCCeEEEE
Q 010322 214 VRTETNI-AAGAVSVSSAAVELALMKLPESSHATARMLVI 252 (513)
Q Consensus 214 Vr~et~i-~~~~~Sva~~Av~la~~~~~~~~l~g~~VlVI 252 (513)
+..+... ...+.+.+++++ +. +.+.|++||||
T Consensus 143 l~~~~a~~~~~~~~t~~~~~---~~----g~~~G~~VLVl 175 (175)
T d1llua1 143 VKATIHPGKLDDINQILDQM---RA----GQIEGRIVLEM 175 (175)
T ss_dssp CCCCEEEECGGGHHHHHHHH---HT----TCCSSEEEEEC
T ss_pred CChhHHHHHHhHHHHHHHHH---Hh----CCCCCCEEEeC
Confidence 2222111 112333333332 21 35689999986
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.71 E-value=0.4 Score=40.53 Aligned_cols=109 Identities=11% Similarity=0.106 Sum_probs=67.3
Q ss_pred CCCCeEEEEcc---cHHHHHHHHHHHHcCCCeEEEEeCCH----HHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEc
Q 010322 244 HATARMLVIGA---GKMGKLVIKHLVAKGCTKMVVVNRSE----ERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTS 316 (513)
Q Consensus 244 l~g~~VlVIGa---G~mG~~ia~~L~~~G~~~V~v~nRs~----~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~A 316 (513)
+.|.+|++||= +.++...+..+...|+. ++++.+.. +.....+++.+. .+...+++.+++.++|+|...
T Consensus 2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~-~~~~~P~~~~~~~~~~~~~~~~~~---~~~~~~d~~~av~~aDvvy~~ 77 (157)
T d1ml4a2 2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVE-LYLISPELLRMPRHIVEELREKGM---KVVETTTLEDVIGKLDVLYVT 77 (157)
T ss_dssp SSSEEEEEESCTTTCHHHHHHHHHGGGSCEE-EEEECCGGGCCCHHHHHHHHHTTC---CEEEESCTHHHHTTCSEEEEC
T ss_pred cCCCEEEEEcCCccChHHHHHHHHHHhcCCc-EEEEccchhhcchHHHHHHHhhcc---cceeecCHHHhhccCcEEEee
Confidence 47899999998 56888899999889985 88877632 122223333332 233346778889999998887
Q ss_pred CCCCc--------------cCCChhhhhcCCchhhhcCCcEEEEeccCCCC--CCcccccccCe
Q 010322 317 TASEA--------------PLFLKDHVQDLPPVEAAVGGLRLFIDISVPRN--VGSCVADVETA 364 (513)
Q Consensus 317 T~s~~--------------~vi~~~~l~~~~~~~~~~~g~~viiDlavPrd--idp~v~~l~gv 364 (513)
+-..+ +.++.+.+.. .++-+++--++||+ |+++|.+-|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~mHplPRg~EI~~~V~d~p~S 133 (157)
T d1ml4a2 78 RIQKERFPDEQEYLKVKGSYQVNLKVLEK--------AKDELRIMHPLPRVDEIHPEVDNTKHA 133 (157)
T ss_dssp CCCGGGSSSHHHHHTTTTCCCBCTTGGGG--------SCTTCEEECCSCCSSSBCGGGGGSTTB
T ss_pred ccccccccchhhHHhhcchhccCHHHHhh--------cCCCeEEecCCCcCceecccccCCccc
Confidence 64322 1222222222 23346666688984 55666554444
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=89.69 E-value=0.065 Score=44.37 Aligned_cols=69 Identities=10% Similarity=0.173 Sum_probs=46.6
Q ss_pred CeEEEEcccHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhc-CCCcEEEEcCCCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCA-ADADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~-~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l-~~aDVVI~AT~s~ 320 (513)
-+|+|+|||.+|+.++.++.. .|++-+.++|-++.+. -..+.+ +.+.+.+++.+.+ ...++++.|+++.
T Consensus 4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~---G~~I~G--i~V~~~~~l~~~~~~~i~iai~~i~~~ 74 (126)
T d2dt5a2 4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKV---GRPVRG--GVIEHVDLLPQRVPGRIEIALLTVPRE 74 (126)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTT---TCEETT--EEEEEGGGHHHHSTTTCCEEEECSCHH
T ss_pred ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhc---CCEECC--EEEecHHHHHHHHhhcccEEEEeCCHH
Confidence 379999999999999987753 4666667788776543 112222 4555666666654 3578888887764
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.54 E-value=0.16 Score=44.88 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=27.6
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
-|+|||+|+.|..+|.++...|.+ |.++++.
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~k-V~lie~~ 37 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFN-TACVEKR 37 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCc-EEEEEec
Confidence 489999999999999999999985 8888764
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=89.34 E-value=0.15 Score=45.48 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=28.1
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
-|+|||+||.|..++.+|...|.+ |+|+++.
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~-V~viE~~ 38 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLK-VAIVERY 38 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCe-EEEEecc
Confidence 489999999999999999999985 9999875
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=89.26 E-value=0.16 Score=43.38 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=27.3
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
-|+|||+|+.|..+|.++...|.+ +.++++.
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~-v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIR-TGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCC-EEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHcCCe-EEEEEEe
Confidence 389999999999999999999986 7778763
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.20 E-value=0.15 Score=45.04 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=26.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCC-----eEEEEeC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCT-----KMVVVNR 278 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~-----~V~v~nR 278 (513)
.+|+|||+|-+|..+|..|...|.+ ++.++.+
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~ 37 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYAD 37 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEES
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCceEEeeeeeccc
Confidence 4799999999999999999999864 4566554
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=89.17 E-value=0.75 Score=40.68 Aligned_cols=84 Identities=10% Similarity=0.148 Sum_probs=50.9
Q ss_pred CchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH-hCCcceeecccch
Q 010322 224 AVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEE-LNGVEIIYKPLSE 302 (513)
Q Consensus 224 ~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~-~g~~~~~~~~~~~ 302 (513)
|..++...+..+... +++.|++|+=+|||. |.+. ..+...|+.+|+.++.+++.. +.+++ ... +.+. ..|
T Consensus 30 ~~~~a~~~~~~~~~~---~dl~Gk~VLDlGcGt-G~l~-i~a~~~ga~~V~~vDid~~a~-~~ar~N~~~--~~~~-~~D 100 (197)
T d1ne2a_ 30 DASTAAYFLIEIYND---GNIGGRSVIDAGTGN-GILA-CGSYLLGAESVTAFDIDPDAI-ETAKRNCGG--VNFM-VAD 100 (197)
T ss_dssp CHHHHHHHHHHHHHH---TSSBTSEEEEETCTT-CHHH-HHHHHTTBSEEEEEESCHHHH-HHHHHHCTT--SEEE-ECC
T ss_pred CHHHHHHHHHHHHHc---CCCCCCEEEEeCCCC-cHHH-HHHHHcCCCcccccccCHHHH-HHHHHcccc--ccEE-EEe
Confidence 344443333333332 589999999999985 4432 346667888999999998766 44444 222 2221 123
Q ss_pred HHhhcCCCcEEEEc
Q 010322 303 MLSCAADADVVFTS 316 (513)
Q Consensus 303 ~~~~l~~aDVVI~A 316 (513)
+.+.-..+|+||.-
T Consensus 101 ~~~l~~~fD~Vi~N 114 (197)
T d1ne2a_ 101 VSEISGKYDTWIMN 114 (197)
T ss_dssp GGGCCCCEEEEEEC
T ss_pred hhhcCCcceEEEeC
Confidence 33334578888863
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.05 E-value=0.14 Score=44.76 Aligned_cols=32 Identities=9% Similarity=0.189 Sum_probs=27.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeC
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNR 278 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR 278 (513)
.++|+|||+|+.|..+|.+|...|.+ ++++++
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~-v~vie~ 36 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELK-PLLFEG 36 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC-CEEECC
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCc-EEEEEe
Confidence 46899999999999999999999986 667664
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.02 E-value=0.18 Score=44.20 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=27.7
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
-|+|||+|+.|..+|.++...|.+ |+++++.
T Consensus 5 DviVIG~GpaGl~aA~~aar~G~k-V~vIEk~ 35 (223)
T d1ebda1 5 ETLVVGAGPGGYVAAIRAAQLGQK-VTIVEKG 35 (223)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCE-EEEEecC
Confidence 489999999999999999999985 8888764
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=88.94 E-value=0.17 Score=44.86 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=28.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
..++|||+|+.|..+|..+...|.+ |+|+++.
T Consensus 6 ~DlvVIG~GpaGl~aA~~aa~~G~~-V~liE~~ 37 (220)
T d1lvla1 6 TTLLIIGGGPGGYVAAIRAGQLGIP-TVLVEGQ 37 (220)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCC-EEEECSS
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCc-EEEEecC
Confidence 3599999999999999999999985 9999874
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=88.78 E-value=0.3 Score=45.43 Aligned_cols=73 Identities=15% Similarity=0.291 Sum_probs=43.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCC--HHHHHHH--HHHhCCcce---eecccchHHhhcC--CCcEEEEc
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRS--EERVAAI--CEELNGVEI---IYKPLSEMLSCAA--DADVVFTS 316 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs--~~ra~~l--a~~~g~~~~---~~~~~~~~~~~l~--~aDVVI~A 316 (513)
.+|||.|+ |-+|+.+++.|.+.|.+ |+++++- ..+...+ ....+...+ .+...+++.+++. ..|+||.+
T Consensus 1 ~KILVTGatGfIGs~lv~~Ll~~g~~-V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~ 79 (338)
T d1orra_ 1 AKLLITGGCGFLGSNLASFALSQGID-LIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL 79 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCE-EEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEee
Confidence 37999999 99999999999999985 8877631 1111111 122222111 1112234445444 46999988
Q ss_pred CCCC
Q 010322 317 TASE 320 (513)
Q Consensus 317 T~s~ 320 (513)
.+..
T Consensus 80 aa~~ 83 (338)
T d1orra_ 80 AGQV 83 (338)
T ss_dssp CCCC
T ss_pred cccc
Confidence 6554
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=88.71 E-value=0.19 Score=44.07 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=26.9
Q ss_pred EEEEcccHHHHHHHHHHHHcCCCeEEEEeC
Q 010322 249 MLVIGAGKMGKLVIKHLVAKGCTKMVVVNR 278 (513)
Q Consensus 249 VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR 278 (513)
|+|||+||.|..+|.++...|.+ |.++++
T Consensus 6 viIIGgGpAGl~aA~~aar~G~~-V~viE~ 34 (229)
T d3lada1 6 VIVIGAGPGGYVAAIKSAQLGLK-TALIEK 34 (229)
T ss_dssp EEEECCSHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHCCCe-EEEEec
Confidence 89999999999999999999986 888875
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.63 E-value=0.47 Score=44.85 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=44.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCC----HHHHHHHHHHhC-Ccceeecc---cchHHhhc--CCCcEEEE
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRS----EERVAAICEELN-GVEIIYKP---LSEMLSCA--ADADVVFT 315 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs----~~ra~~la~~~g-~~~~~~~~---~~~~~~~l--~~aDVVI~ 315 (513)
|.|||.|+ |-+|+.++..|...|.+ |+++++. .+.......... .......+ .+++...+ .++|+||.
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vih 80 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYD-CVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIH 80 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCe-EEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEE
Confidence 67899998 99999999999999974 8887641 122212211111 11111112 23343333 37899999
Q ss_pred cCCCCc
Q 010322 316 STASEA 321 (513)
Q Consensus 316 AT~s~~ 321 (513)
+.+...
T Consensus 81 lAa~~~ 86 (347)
T d1z45a2 81 FAGLKA 86 (347)
T ss_dssp CCSCCC
T ss_pred cccccc
Confidence 876543
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=88.54 E-value=0.051 Score=46.47 Aligned_cols=94 Identities=16% Similarity=0.222 Sum_probs=49.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHc---CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAK---GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~---G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.+|.|||+ |-.|+.+++.|..+ ...++..+..+...- .. -.+...........+ .+.+.++|+||.|+++...
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~g-k~-~~~~~~~~~~~~~~~-~~~~~~~DvvF~alp~~~s 77 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGV-PA-PNFGKDAGMLHDAFD-IESLKQLDAVITCQGGSYT 77 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSS-BC-CCSSSCCCBCEETTC-HHHHTTCSEEEECSCHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccc-cc-cccCCcceeeecccc-hhhhccccEEEEecCchHH
Confidence 37999999 99999999877653 233455443321100 00 011111111111111 2335789999999988643
Q ss_pred CCChhhhhcCCchhhhcCCcEEEEeccC
Q 010322 323 LFLKDHVQDLPPVEAAVGGLRLFIDISV 350 (513)
Q Consensus 323 vi~~~~l~~~~~~~~~~~g~~viiDlav 350 (513)
.+....... .+...++||+|-
T Consensus 78 ---~~~~~~l~~----~g~~~~VIDlSs 98 (147)
T d1mb4a1 78 ---EKVYPALRQ----AGWKGYWIDAAS 98 (147)
T ss_dssp ---HHHHHHHHH----TTCCSEEEESSS
T ss_pred ---HHHhHHHHH----cCCceEEEeCCc
Confidence 222221110 233468999973
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=88.48 E-value=0.15 Score=47.86 Aligned_cols=32 Identities=19% Similarity=0.464 Sum_probs=27.5
Q ss_pred eEEEEcccHHHHHHHHHHH-----HcCCCeEEEEeCCH
Q 010322 248 RMLVIGAGKMGKLVIKHLV-----AKGCTKMVVVNRSE 280 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~-----~~G~~~V~v~nRs~ 280 (513)
-|+|||+|+.|..+|..|. ..|++ |+|++|.+
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~-v~vlEr~~ 45 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLK-VRIIDKRS 45 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCC-EEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCc-EEEEcCCC
Confidence 4999999999999999996 36885 99999853
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.39 E-value=0.16 Score=45.38 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=27.3
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNR 278 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR 278 (513)
-|+|||+|+.|..+|.++...|.+ |.|++.
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~k-V~viE~ 34 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKK-VMVLDF 34 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCC-EEEECC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe-EEEEec
Confidence 489999999999999999999986 888884
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=88.05 E-value=0.26 Score=42.82 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=28.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCC-eEEEEeCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCT-KMVVVNRS 279 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~-~V~v~nRs 279 (513)
+||+|||+|.+|..+|..|+..+.. +|+++.|.
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~ 34 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG 34 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 4799999999999999999987553 68998875
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.05 E-value=0.33 Score=45.30 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=43.5
Q ss_pred CeEEE-Ecc-cHHHHHHHHHHHHcCCC--eEEEEeCCHHH---HHHHHHHhCCc--ceeec--c---cchHHhh---c--
Q 010322 247 ARMLV-IGA-GKMGKLVIKHLVAKGCT--KMVVVNRSEER---VAAICEELNGV--EIIYK--P---LSEMLSC---A-- 307 (513)
Q Consensus 247 ~~VlV-IGa-G~mG~~ia~~L~~~G~~--~V~v~nRs~~r---a~~la~~~g~~--~~~~~--~---~~~~~~~---l-- 307 (513)
++|+| .|+ ++||+++++.|...|++ .|.++.|+.+. ..+.++++... .+... + .++.... +
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 81 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence 45554 487 99999999999999986 24445565443 33444443211 11111 1 1222221 1
Q ss_pred CCCcEEEEcCCCCc
Q 010322 308 ADADVVFTSTASEA 321 (513)
Q Consensus 308 ~~aDVVI~AT~s~~ 321 (513)
...|++|++.+...
T Consensus 82 g~idilvnnag~~~ 95 (285)
T d1jtva_ 82 GRVDVLVCNAGLGL 95 (285)
T ss_dssp SCCSEEEECCCCCC
T ss_pred cchhhhhhcccccc
Confidence 36899999877654
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=87.88 E-value=0.24 Score=44.85 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=29.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHH
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEE 281 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ 281 (513)
|.|+|.|+ |+||+++++.|...|++ |++++|+.+
T Consensus 2 kVvlITGas~GIG~aiA~~la~~Ga~-V~~~~~~~~ 36 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAAGHQ-IVGIDIRDA 36 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECChH
Confidence 45788887 89999999999999995 999998753
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=87.72 E-value=0.19 Score=46.31 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=29.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH-cCCCeEEEEeCCH
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVA-KGCTKMVVVNRSE 280 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~-~G~~~V~v~nRs~ 280 (513)
...-|+|||+|+.|..+|..|+. .|.+ |+++++.+
T Consensus 32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~-V~vlE~~~ 67 (278)
T d1rp0a1 32 AETDVVVVGAGSAGLSAAYEISKNPNVQ-VAIIEQSV 67 (278)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSC-EEEEESSS
T ss_pred cCCCEEEECCCHHHHHHHHHHHHccCCe-EEEEecCC
Confidence 34569999999999999999976 4885 99999864
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.52 E-value=0.51 Score=38.90 Aligned_cols=94 Identities=20% Similarity=0.277 Sum_probs=60.3
Q ss_pred CCCCCCeEEEEcc----------cHHHHHHHHHHHHcCCCeEEEEeCCHHHH-------HHHHHHhCCcceeecccchHH
Q 010322 242 SSHATARMLVIGA----------GKMGKLVIKHLVAKGCTKMVVVNRSEERV-------AAICEELNGVEIIYKPLSEML 304 (513)
Q Consensus 242 ~~l~g~~VlVIGa----------G~mG~~ia~~L~~~G~~~V~v~nRs~~ra-------~~la~~~g~~~~~~~~~~~~~ 304 (513)
.++.+++|+|+|. +.-+..++..|...|+ +|.++|+.-... ..+...++ .......+++.
T Consensus 9 ~~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~-~V~~~DP~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 85 (136)
T d1mv8a3 9 TSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGY-ELRIFDRNVEYARVHGANKEYIESKIP--HVSSLLVSDLD 85 (136)
T ss_dssp TTSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTC-EEEEECHHHHHHTTSSSCHHHHHHTSH--HHHTTBCSCHH
T ss_pred HhcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhc-cccccCCCCCHHHHhhhhhhhhhhccc--cccceeehhhh
Confidence 3578899999996 4567889999999998 599999743221 01111111 00112235677
Q ss_pred hhcCCCcEEEEcCCCCccCCChhhhhcCCchhhhcCCcEEEEec
Q 010322 305 SCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDI 348 (513)
Q Consensus 305 ~~l~~aDVVI~AT~s~~~vi~~~~l~~~~~~~~~~~g~~viiDl 348 (513)
+++.++|+||-+|..+.+ .+...... ...+++|+
T Consensus 86 e~i~~~D~ivi~t~h~~f---~~l~~~~~-------~~~~I~D~ 119 (136)
T d1mv8a3 86 EVVASSDVLVLGNGDELF---VDLVNKTP-------SGKKLVDL 119 (136)
T ss_dssp HHHHHCSEEEECSCCGGG---HHHHHSCC-------TTCEEEES
T ss_pred hhhhhceEEEEEeCCHHH---HHHHHHhc-------CCCEEEEC
Confidence 788899999999998764 22222221 23678996
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=87.43 E-value=0.22 Score=46.30 Aligned_cols=32 Identities=16% Similarity=0.407 Sum_probs=29.0
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
-|+|||+|..|..+|..|...|.+ |+|+++.+
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~~-V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGAK-VILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCC-EEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence 499999999999999999999985 99998763
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=87.38 E-value=1.2 Score=39.04 Aligned_cols=86 Identities=17% Similarity=0.151 Sum_probs=49.2
Q ss_pred CchHHHHHHHHHHhhCCCCCCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhC--Ccceeecccc
Q 010322 224 AVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELN--GVEIIYKPLS 301 (513)
Q Consensus 224 ~~Sva~~Av~la~~~~~~~~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g--~~~~~~~~~~ 301 (513)
|..++...+..+.. . +++.|++||=+|||.-+..+ .+...|+.+|+.++.++..++...+.+. +....+.. .
T Consensus 28 p~~~a~~~~~~~~~-~--~dl~g~~vLDlg~GtG~l~i--~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~-~ 101 (201)
T d1wy7a1 28 PGNAASELLWLAYS-L--GDIEGKVVADLGAGTGVLSY--GALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFI-G 101 (201)
T ss_dssp CHHHHHHHHHHHHH-T--TSSTTCEEEEETCTTCHHHH--HHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEE-S
T ss_pred CHHHHHHHHHHHHh-c--CCCCCCEEEECcCcchHHHH--HHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEE-C
Confidence 34444443444443 2 68899999999997554433 2446788889999999876633332221 11122211 2
Q ss_pred hHHhhcCCCcEEEE
Q 010322 302 EMLSCAADADVVFT 315 (513)
Q Consensus 302 ~~~~~l~~aDVVI~ 315 (513)
+....-..+|+||.
T Consensus 102 d~~~~~~~fD~Vi~ 115 (201)
T d1wy7a1 102 DVSEFNSRVDIVIM 115 (201)
T ss_dssp CGGGCCCCCSEEEE
T ss_pred chhhhCCcCcEEEE
Confidence 23333456788775
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.23 E-value=0.28 Score=43.10 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=27.1
Q ss_pred EEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 249 MLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 249 VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
|+|||+|+.|..+|.++...|.+ |.|+++.
T Consensus 6 viIIG~GpaG~~aA~~aar~G~k-V~vIEk~ 35 (221)
T d3grsa1 6 YLVIGGGSGGLASARRAAELGAR-AAVVESH 35 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCCE-EEEEecc
Confidence 89999999999999999999985 8888763
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=87.13 E-value=0.24 Score=39.26 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=28.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
++.|++|+|||+|.-|.-++..|...+.+ +++..|.
T Consensus 29 ~f~gK~VlVVG~g~Sa~dia~~l~~~ak~-v~~~~~r 64 (107)
T d2gv8a2 29 LFVGESVLVVGGASSANDLVRHLTPVAKH-PIYQSLL 64 (107)
T ss_dssp GGTTCCEEEECSSHHHHHHHHHHTTTSCS-SEEEECT
T ss_pred hcCCCeEEEECCCCCHHHHHHHHHHhcCE-EEEEEec
Confidence 46899999999999999999999876554 5555543
|
| >d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: YjeF N-terminal domain-like superfamily: YjeF N-terminal domain-like family: YjeF N-terminal domain-like domain: Hypothetical protein TM0922, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.72 E-value=0.4 Score=42.94 Aligned_cols=70 Identities=20% Similarity=0.281 Sum_probs=39.3
Q ss_pred CCCCCeEE-EEcc---cHHHHHHHHHHHHcCCCeEEEEeCCH----HH--HHHHHHHhCCcceeecccchHHhhcCCCcE
Q 010322 243 SHATARML-VIGA---GKMGKLVIKHLVAKGCTKMVVVNRSE----ER--VAAICEELNGVEIIYKPLSEMLSCAADADV 312 (513)
Q Consensus 243 ~l~g~~Vl-VIGa---G~mG~~ia~~L~~~G~~~V~v~nRs~----~r--a~~la~~~g~~~~~~~~~~~~~~~l~~aDV 312 (513)
+...++|+ ++|. |+=|..++++|..+|++ |.++-... +. ...+..+++.. .+...+ ...+..+|+
T Consensus 37 ~~~~~~vlvl~G~GNNGGDGl~~Ar~L~~~g~~-V~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~dl 111 (211)
T d2ax3a2 37 NLSDYRFLVLCGGGNNGGDGFVVARNLLGVVKD-VLVVFLGKKKTPDCEYNYGLYKKFGGK--VVEQFE--PSILNEFDV 111 (211)
T ss_dssp CCTTCEEEEEECSSHHHHHHHHHHHHHTTTSSE-EEEEECCSSCCHHHHHHHHHHHHTTCC--EESCCC--GGGGGGCSE
T ss_pred cccCCcEEEEECCCCCchhHHHHHHHHHhcCCe-eEEEecCccCCcHHHHHHHHHHHcCCc--cccccc--cccccCceE
Confidence 44455554 5576 56777899999999984 77765422 11 12223333321 111111 123567899
Q ss_pred EEEcC
Q 010322 313 VFTST 317 (513)
Q Consensus 313 VI~AT 317 (513)
||+|-
T Consensus 112 IIDal 116 (211)
T d2ax3a2 112 VVDAI 116 (211)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 99994
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=86.53 E-value=0.3 Score=43.05 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=27.6
Q ss_pred EEEEcccHHHHHHHHHHHHcCCCeEEEEeC
Q 010322 249 MLVIGAGKMGKLVIKHLVAKGCTKMVVVNR 278 (513)
Q Consensus 249 VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR 278 (513)
|+|||+||.|..+|.++...|.+.|.|.+.
T Consensus 6 viIIG~GpaGl~aA~~aa~~g~k~V~iie~ 35 (238)
T d1aoga1 6 LVVIGAGSGGLEAAWNAATLYKKRVAVIDV 35 (238)
T ss_dssp EEEECCSHHHHHHHHHHHHTSCCCEEEEES
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEEEe
Confidence 899999999999999999998878988875
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.48 E-value=0.27 Score=47.93 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=28.1
Q ss_pred eEEEEcccHHHHHHHHHHHH------cCCCeEEEEeCCH
Q 010322 248 RMLVIGAGKMGKLVIKHLVA------KGCTKMVVVNRSE 280 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~------~G~~~V~v~nRs~ 280 (513)
-|+|||+|+.|..+|..|+. .|.+ |.|+++..
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~-VlllEK~~ 71 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLR-VCLVEKAA 71 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTCCCC-EEEECSSS
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcCCCE-EEEEcCCC
Confidence 59999999999999999986 7885 99999863
|
| >d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=86.45 E-value=1.6 Score=41.17 Aligned_cols=73 Identities=10% Similarity=0.202 Sum_probs=50.5
Q ss_pred CCCCCCeEEEEcc---cHHHHHHHHHHHHcCCCeEEEEeCCH----HHHHHHHHHhCCcceeecccchHHhhcCCCcEEE
Q 010322 242 SSHATARMLVIGA---GKMGKLVIKHLVAKGCTKMVVVNRSE----ERVAAICEELNGVEIIYKPLSEMLSCAADADVVF 314 (513)
Q Consensus 242 ~~l~g~~VlVIGa---G~mG~~ia~~L~~~G~~~V~v~nRs~----~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI 314 (513)
+++.|.+|+++|- +.+....+..+...|..+++++.+.. +...+.+++.+. .+...++..+++.++|+|.
T Consensus 150 g~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~---~~~~~~d~~~a~~~aDvvy 226 (310)
T d1tuga1 150 GRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGI---AWSLHSSIEEVMAEVDILY 226 (310)
T ss_dssp SCSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTC---CEEEESCGGGTTTTCSEEE
T ss_pred CCcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccc---eeeeeechhhhccCCceee
Confidence 5789999999997 66777777777777765788887632 223344444332 2333467778899999998
Q ss_pred EcC
Q 010322 315 TST 317 (513)
Q Consensus 315 ~AT 317 (513)
...
T Consensus 227 ~~~ 229 (310)
T d1tuga1 227 MTR 229 (310)
T ss_dssp ECC
T ss_pred ecc
Confidence 653
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.39 E-value=0.31 Score=45.25 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=29.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
|+|||.|+ |-+|+.++..|...|++ |+.++|..
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~-V~~~~r~~ 34 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYR-VHGLVARR 34 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCE-EEEEECCC
Confidence 68999999 99999999999999985 88888753
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.13 E-value=1.9 Score=36.40 Aligned_cols=70 Identities=21% Similarity=0.381 Sum_probs=47.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCC----HHHHHHHHH----HhCCcceeecccchHHhhcCCCcEEE
Q 010322 244 HATARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRS----EERVAAICE----ELNGVEIIYKPLSEMLSCAADADVVF 314 (513)
Q Consensus 244 l~g~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs----~~ra~~la~----~~g~~~~~~~~~~~~~~~l~~aDVVI 314 (513)
+.|.+|+++|- ..++...+..|...|+ +++++... ++.....++ ..+. .+...++..+++.++|+|.
T Consensus 2 l~gl~Ia~VGD~~nv~~Sli~~l~~~g~-~v~~~~P~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~ea~~~adviy 77 (163)
T d1pvva2 2 IKGVKVVYVGDGNNVAHSLMIAGTKLGA-DVVVATPEGYEPDEKVIKWAEQNAAESGG---SFELLHDPVKAVKDADVIY 77 (163)
T ss_dssp CTTCEEEEESCCCHHHHHHHHHHHHTTC-EEEEECCTTCCCCHHHHHHHHHHHHHHTC---EEEEESCHHHHTTTCSEEE
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEecccccCCChHHHHHHHHhhhcccc---eEEEecCHHHHhhhccEEe
Confidence 67999999998 5576788888888998 48888763 122212222 2222 2333467788899999999
Q ss_pred EcC
Q 010322 315 TST 317 (513)
Q Consensus 315 ~AT 317 (513)
..+
T Consensus 78 ~~~ 80 (163)
T d1pvva2 78 TDV 80 (163)
T ss_dssp ECC
T ss_pred ecc
Confidence 754
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=86.09 E-value=0.071 Score=46.23 Aligned_cols=74 Identities=22% Similarity=0.246 Sum_probs=41.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHc-CCCeEEEEeCCHHHH--HHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCC
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAK-GCTKMVVVNRSEERV--AAICEELNGVEIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~-G~~~V~v~nRs~~ra--~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
.-+|+|+|+ |.||+.+++.+... ++.=+..++|..... ..+.+-.+.....+...+++......+||||+-|..
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~p 81 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRP 81 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEeccH
Confidence 457999997 99999999988875 444333455532211 000000010001111223455566789999998755
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=86.05 E-value=1.8 Score=36.31 Aligned_cols=72 Identities=10% Similarity=0.204 Sum_probs=49.3
Q ss_pred CCCCeEEEEcc---cHHHHHHHHHHHHcCCCeEEEEeCCH----HHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEc
Q 010322 244 HATARMLVIGA---GKMGKLVIKHLVAKGCTKMVVVNRSE----ERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTS 316 (513)
Q Consensus 244 l~g~~VlVIGa---G~mG~~ia~~L~~~G~~~V~v~nRs~----~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~A 316 (513)
+.|.+|+++|= |.++...+..|...|...++++.... +.....++..+. .+...+++.+++.++|||...
T Consensus 2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~---~~~~~~d~~~a~~~aDvvy~~ 78 (160)
T d1ekxa2 2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGI---AWSLHSSIEEVMAEVDILYMT 78 (160)
T ss_dssp SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTC---CEEECSCSTTTGGGCSEEEEC
T ss_pred CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhcc---ccccccCHHHHhCcCceEEee
Confidence 46899999997 55888888888888776677776532 233344554443 222346777788999999876
Q ss_pred CC
Q 010322 317 TA 318 (513)
Q Consensus 317 T~ 318 (513)
..
T Consensus 79 ~~ 80 (160)
T d1ekxa2 79 RV 80 (160)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.80 E-value=0.075 Score=45.03 Aligned_cols=90 Identities=16% Similarity=0.220 Sum_probs=48.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCccC
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKG--CTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPL 323 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G--~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~v 323 (513)
.+|.|+|| |-.|+.+++.|..++ ..++..+..+....+.+. +......+... ......++|++|.|++....
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~--~~~~~~~~~~~--~~~~~~~~d~vf~a~p~~~s- 77 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG--FAESSLRVGDV--DSFDFSSVGLAFFAAAAEVS- 77 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE--ETTEEEECEEG--GGCCGGGCSEEEECSCHHHH-
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCccee--eccccchhccc--hhhhhccceEEEecCCcchh-
Confidence 57999999 999999999997543 345655433211110000 01101111111 12235689999999987643
Q ss_pred CChhhhhcCCchhhhcCCcEEEEecc
Q 010322 324 FLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 324 i~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
.+...... .....+||++
T Consensus 78 --~~~~~~~~------~~g~~VID~S 95 (144)
T d2hjsa1 78 --RAHAERAR------AAGCSVIDLS 95 (144)
T ss_dssp --HHHHHHHH------HTTCEEEETT
T ss_pred --hhhccccc------cCCceEEeec
Confidence 22222211 1226789997
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.79 E-value=1.3 Score=38.51 Aligned_cols=73 Identities=12% Similarity=0.110 Sum_probs=52.8
Q ss_pred CCCCCeEEEEcc--cHHHHHHHHHHHHcCCCeEEEEeCCH--------HHHHHHHHHhCCcceeecccchHHhhcCCCcE
Q 010322 243 SHATARMLVIGA--GKMGKLVIKHLVAKGCTKMVVVNRSE--------ERVAAICEELNGVEIIYKPLSEMLSCAADADV 312 (513)
Q Consensus 243 ~l~g~~VlVIGa--G~mG~~ia~~L~~~G~~~V~v~nRs~--------~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDV 312 (513)
.+.|.+|++||= ..+....+..+...|+ +++++.+.. +.++.++...+. .+...+++.+++.++|+
T Consensus 2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~-~l~l~~P~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~eai~~aDv 77 (185)
T d1dxha2 2 PLHDISYAYLGDARNNMGNSLLLIGAKLGM-DVRIAAPKALWPHDEFVAQCKKFAEESGA---KLTLTEDPKEAVKGVDF 77 (185)
T ss_dssp CGGGCEEEEESCCSSHHHHHHHHHHHHTTC-EEEEECCGGGSCCHHHHHHHHHHHHHHTC---EEEEESCHHHHTTTCSE
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHHHcCC-EEEEEccHHHHhhhHHHHHHHHHhhccCC---eEEEEeChhhccccccE
Confidence 367899999994 4799999999999998 599998732 223334444443 33344678889999999
Q ss_pred EEEcCCC
Q 010322 313 VFTSTAS 319 (513)
Q Consensus 313 VI~AT~s 319 (513)
|..-+=.
T Consensus 78 Vyt~~w~ 84 (185)
T d1dxha2 78 VHTDVWV 84 (185)
T ss_dssp EEECCCS
T ss_pred EEeehhh
Confidence 9987643
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=85.59 E-value=0.69 Score=39.98 Aligned_cols=30 Identities=30% Similarity=0.633 Sum_probs=25.4
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNR 278 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR 278 (513)
+|.|=|.|-||+++.+.+...+.. |..+|-
T Consensus 2 kIgINGfGRIGR~~~R~~~~~~~~-ivaINd 31 (169)
T d1dssg1 2 KIGINGFGRIGRLVLRAALEMGAQ-VVAVND 31 (169)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc-EEEECC
Confidence 689999999999999999999886 555553
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=85.13 E-value=0.3 Score=45.77 Aligned_cols=32 Identities=16% Similarity=0.400 Sum_probs=28.8
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
-|+|||+|..|..+|..|...|.+ |+|+++.+
T Consensus 25 DVvVIG~G~aGl~aA~~la~~G~~-V~llEk~~ 56 (322)
T d1d4ca2 25 DVVIIGSGGAGLAAAVSARDAGAK-VILLEKEP 56 (322)
T ss_dssp SEEEECSSHHHHHHHHHHHTTTCC-EEEECSSS
T ss_pred eEEEECcCHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence 399999999999999999999986 99998753
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=84.69 E-value=0.44 Score=43.34 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=27.6
Q ss_pred EEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 249 MLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 249 VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
|+|||+|+.|..+|..+...|.+ |.++++.
T Consensus 4 viVIG~G~aG~~aA~~aa~~G~~-V~liE~~ 33 (259)
T d1onfa1 4 LIVIGGGSGGMAAARRAARHNAK-VALVEKS 33 (259)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 89999999999999999999985 8999874
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=84.68 E-value=0.34 Score=40.54 Aligned_cols=31 Identities=19% Similarity=0.471 Sum_probs=26.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
.||+|||+|.+|..+|..|.. +. +|+++++.
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~-~~-~Vtvv~~~ 31 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ-TY-EVTVIDKE 31 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TS-EEEEECSS
T ss_pred CeEEEECCcHHHHHHHHHHHc-CC-CEEEEecc
Confidence 379999999999999998864 55 69999874
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=84.51 E-value=0.33 Score=45.48 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=26.7
Q ss_pred EEEEcccHHHHHHHHHHHHcCCCeEEEEeC
Q 010322 249 MLVIGAGKMGKLVIKHLVAKGCTKMVVVNR 278 (513)
Q Consensus 249 VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR 278 (513)
|+|||+|..|..+|..|+..|.+ |+|+..
T Consensus 8 VvVIG~G~AGl~AAl~aa~~G~~-V~liEK 36 (336)
T d2bs2a2 8 SLVIGGGLAGLRAAVATQQKGLS-TIVLSL 36 (336)
T ss_dssp EEEECCSHHHHHHHHHHHTTTCC-EEEECS
T ss_pred EEEECcCHHHHHHHHHHHHCCCC-EEEEec
Confidence 99999999999999999999996 888865
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=84.49 E-value=0.66 Score=40.06 Aligned_cols=76 Identities=26% Similarity=0.383 Sum_probs=43.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcC-CCeEEEEeCCHH--HHHHHHHHhC---C-cceeecccchHHhhcCCCcEEEEcCC
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKG-CTKMVVVNRSEE--RVAAICEELN---G-VEIIYKPLSEMLSCAADADVVFTSTA 318 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G-~~~V~v~nRs~~--ra~~la~~~g---~-~~~~~~~~~~~~~~l~~aDVVI~AT~ 318 (513)
.+|.|+|| |-+|+.+++.|..+. ++-..++.++.. ..+.+...+. + ........++......++|+||.|++
T Consensus 2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp 81 (179)
T d2g17a1 2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA 81 (179)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence 47999998 999999999999873 332234443211 1112222211 1 01112222333344568999999998
Q ss_pred CCcc
Q 010322 319 SEAP 322 (513)
Q Consensus 319 s~~~ 322 (513)
....
T Consensus 82 ~~~s 85 (179)
T d2g17a1 82 HEVS 85 (179)
T ss_dssp HHHH
T ss_pred chhH
Confidence 7643
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=84.19 E-value=0.079 Score=45.31 Aligned_cols=91 Identities=15% Similarity=0.110 Sum_probs=49.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 246 TARMLVIGA-GKMGKLVIKHLVAKG--CTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 246 g~~VlVIGa-G~mG~~ia~~L~~~G--~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
|-+|.|+|| |-+|..+++.|..+. ..++..+.-+ ..+ -+.+....-.............+.|+++.|++....
T Consensus 1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~-~s~---G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s 76 (154)
T d2gz1a1 1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASA-RSA---GKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTS 76 (154)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECG-GGT---TCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccc-ccc---cccccccCCcccccccchhhhhhhhhhhhccCccch
Confidence 357999999 999999999998884 3445544322 111 001100000011111122335689999999987543
Q ss_pred CCChhhhhcCCchhhhcCCcEEEEecc
Q 010322 323 LFLKDHVQDLPPVEAAVGGLRLFIDIS 349 (513)
Q Consensus 323 vi~~~~l~~~~~~~~~~~g~~viiDla 349 (513)
. +...... .....+||++
T Consensus 77 ~---~~~~~~~------~~~~~VIDlS 94 (154)
T d2gz1a1 77 A---KYAPYAV------KAGVVVVDNT 94 (154)
T ss_dssp H---HHHHHHH------HTTCEEEECS
T ss_pred h---hHHhhhc------cccceehhcC
Confidence 2 1111111 1237889997
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=84.10 E-value=0.38 Score=39.65 Aligned_cols=67 Identities=24% Similarity=0.285 Sum_probs=48.6
Q ss_pred CCCCeEEEEcc----cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCC
Q 010322 244 HATARMLVIGA----GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTAS 319 (513)
Q Consensus 244 l~g~~VlVIGa----G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s 319 (513)
+..++|+|||+ |..|..++++|...|..+|+.+|++.+. +.+ .. .+.++.+.-...|+++.++++
T Consensus 6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~-------i~G--~~--~y~sl~dlp~~vDlvvi~vp~ 74 (129)
T d2csua1 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE-------VQG--VK--AYKSVKDIPDEIDLAIIVVPK 74 (129)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE-------ETT--EE--CBSSTTSCSSCCSEEEECSCH
T ss_pred CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc-------cCC--eE--eecchhhcCCCCceEEEecCh
Confidence 46799999998 8899999999987665589999997432 222 12 233444444578999999987
Q ss_pred Cc
Q 010322 320 EA 321 (513)
Q Consensus 320 ~~ 321 (513)
..
T Consensus 75 ~~ 76 (129)
T d2csua1 75 RF 76 (129)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=83.98 E-value=1.4 Score=37.97 Aligned_cols=31 Identities=29% Similarity=0.540 Sum_probs=24.6
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNR 278 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nR 278 (513)
+|.|=|.|.||+++.+.+...+--+|..+|-
T Consensus 3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd 33 (169)
T d1u8fo1 3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAIND 33 (169)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred EEEEECCcHHHHHHHHHHHHCCCcEEEEecC
Confidence 7999999999999999888765335666654
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=83.96 E-value=0.48 Score=39.62 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=31.9
Q ss_pred CCCCCeEEEE--cccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 243 SHATARMLVI--GAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 243 ~l~g~~VlVI--GaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
...++.|+|+ |+|-||..+|..|...|. +|+++.+.+
T Consensus 36 ~~~~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~ 74 (156)
T d1djqa2 36 KKIGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH 74 (156)
T ss_dssp SCCCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred cccCCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCC
Confidence 3467788887 999999999999999998 599999874
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=83.88 E-value=0.49 Score=41.52 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=30.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
++.||+|+|||+|.-|.-++..+...+.+ ++++-|+
T Consensus 29 ~~~gK~V~VvG~G~Sa~dia~~~~~~~~~-~~~~~~~ 64 (235)
T d1w4xa2 29 DFSGQRVGVIGTGSSGIQVSPQIAKQAAE-LFVFQRT 64 (235)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHHBSE-EEEEESS
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhhhcc-ccccccc
Confidence 57899999999999999999999998875 6666555
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=83.75 E-value=0.39 Score=45.07 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=28.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
--|+|||+|..|..+|..+...|.+ |+|+++.
T Consensus 20 ~DVvVIGaG~aGl~AA~~aa~~G~~-V~vlEK~ 51 (317)
T d1qo8a2 20 TQVLVVGAGSAGFNASLAAKKAGAN-VILVDKA 51 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCC-EEEECSS
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence 3499999999999999999999986 8888875
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.91 E-value=0.35 Score=45.33 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=29.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHc--CCCeEEEEeCCH
Q 010322 245 ATARMLVIGAGKMGKLVIKHLVAK--GCTKMVVVNRSE 280 (513)
Q Consensus 245 ~g~~VlVIGaG~mG~~ia~~L~~~--G~~~V~v~nRs~ 280 (513)
.+..|+|||+|+.|..+|..|... |.+ |+++++.+
T Consensus 49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~-~~~~~~~~ 85 (311)
T d2gjca1 49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLK-VCIIESSV 85 (311)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSC-EEEECSSS
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCe-EEEEEcCC
Confidence 456799999999999999999864 775 99998864
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=82.87 E-value=0.42 Score=42.58 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=27.9
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
-|+|||+|+.|..+|.++...|.++|.|+...
T Consensus 5 DvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~ 36 (240)
T d1feca1 5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQ 36 (240)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHCCCEEEEESC
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCEEEEEEEe
Confidence 48999999999999999999888778887753
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=82.74 E-value=3.6 Score=35.28 Aligned_cols=30 Identities=23% Similarity=0.567 Sum_probs=23.2
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCC---eEEEEe
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCT---KMVVVN 277 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~---~V~v~n 277 (513)
+|.|=|.|-||+++++.+...+.. +|..+|
T Consensus 3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaIN 35 (173)
T d1obfo1 3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAIN 35 (173)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEc
Confidence 689999999999999998864321 355555
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.15 E-value=0.11 Score=44.78 Aligned_cols=71 Identities=18% Similarity=0.361 Sum_probs=41.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 246 TARMLVIGAGKMGKLVIKHLVAK-GCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 246 g~~VlVIGaG~mG~~ia~~L~~~-G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
.-+|+|||+|.||+..+..+... +...+.+++....+. .+. .. ......++++.+ -.+.|+|+-||+....
T Consensus 7 k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~--~~~-~~--~~~~~~~~e~l~-~~~iD~V~I~tp~~~H 78 (172)
T d1lc0a1 7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRE--LGS-LD--EVRQISLEDALR-SQEIDVAYICSESSSH 78 (172)
T ss_dssp SEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSC--CCE-ET--TEEBCCHHHHHH-CSSEEEEEECSCGGGH
T ss_pred CcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHH--HHH-hh--ccCcCCHHHHHh-CCCcchhhhccccccc
Confidence 44899999999999998887753 223355555432211 111 11 122223333322 2478999999988654
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=82.12 E-value=0.15 Score=46.53 Aligned_cols=62 Identities=16% Similarity=0.346 Sum_probs=39.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcC--CCcEEEEcCCCC
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAA--DADVVFTSTASE 320 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~--~aDVVI~AT~s~ 320 (513)
++|||.|+ |-+|+.+++.|...|. +++++++... +.+ .+...+.+.+.+. ..|+||.+.+..
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~--~v~~~~~~~~-------~~~---Dl~~~~~~~~~i~~~~~D~Vih~Aa~~ 65 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGN--LIALDVHSKE-------FCG---DFSNPKGVAETVRKLRPDVIVNAAAHT 65 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSE--EEEECTTCSS-------SCC---CTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--EEEEECCCcc-------ccC---cCCCHHHHHHHHHHcCCCEEEEecccc
Confidence 47999998 9999999999998874 4444443211 111 1223334444443 569999987643
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=81.95 E-value=0.77 Score=36.96 Aligned_cols=64 Identities=22% Similarity=0.449 Sum_probs=46.2
Q ss_pred CeEEEEcc----cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecccchHHhhcCCCcEEEEcCCCCcc
Q 010322 247 ARMLVIGA----GKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAP 322 (513)
Q Consensus 247 ~~VlVIGa----G~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDVVI~AT~s~~~ 322 (513)
|+|.|||+ |..|..+++.|...|+ +|+-+|++.+. ..+ .. .+.++.+.-...|+++-+++....
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~-~V~pVnP~~~~-------i~G--~~--~y~sl~~lp~~~D~vvi~vp~~~~ 69 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGF-EVLPVNPNYDE-------IEG--LK--CYRSVRELPKDVDVIVFVVPPKVG 69 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTC-EEEEECTTCSE-------ETT--EE--CBSSGGGSCTTCCEEEECSCHHHH
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCC-EEEEEcccccc-------ccC--cc--ccccchhccccceEEEEEeCHHHH
Confidence 68999996 7889999999999999 59999986432 222 12 234444444567999999987643
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.58 E-value=1.3 Score=41.42 Aligned_cols=73 Identities=21% Similarity=0.200 Sum_probs=42.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHH--HHHHHHhCCc-ceeecc--cchHHhhcCCCcEEEEcC
Q 010322 243 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERV--AAICEELNGV-EIIYKP--LSEMLSCAADADVVFTST 317 (513)
Q Consensus 243 ~l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra--~~la~~~g~~-~~~~~~--~~~~~~~l~~aDVVI~AT 317 (513)
.++|++||-|||| .|.+.+ .++..|+++|+.++.++.-. .......+.. .+.+.. ..++..-...+|+|++-.
T Consensus 33 ~~~~~~VLDiGcG-~G~lsl-~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~ 110 (311)
T d2fyta1 33 IFKDKVVLDVGCG-TGILSM-FAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEW 110 (311)
T ss_dssp GTTTCEEEEETCT-TSHHHH-HHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECC
T ss_pred cCCcCEEEEECCC-CCHHHH-HHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEee
Confidence 3579999999998 555433 45567998999999986422 1222222211 122221 122222235789999753
|
| >d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=81.44 E-value=0.064 Score=47.45 Aligned_cols=95 Identities=13% Similarity=0.198 Sum_probs=59.3
Q ss_pred HhcCCceeeeeeeeccCCC-----CcccCcchhhchH------HHH-----HHHhHhcCccc--------chhhHHHHHH
Q 010322 152 LLYNKDATQHLFEVSAGLD-----SLVLGEGQILAQV------KQV-----VKVGQGVVGFG--------RNISGLFKHA 207 (513)
Q Consensus 152 ~~~G~eav~hlf~V~sGld-----S~vvGE~qIlgQv------k~A-----~~~a~~~~~~g--------~~L~~lf~~a 207 (513)
...|||+++.+.++++++. ++.+|+..+.... ... .+.|.+....| ..++|.|+++
T Consensus 60 ~vlGHE~~G~V~~vG~~v~~~~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~~G~~~~~~~~~~~~Gg~ae~ 139 (184)
T d1vj0a1 60 IILGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSH 139 (184)
T ss_dssp BCCCCEEEEEEEEESSCCBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSE
T ss_pred cccceeeeeeeeEEeccccccccccccceeeeEeccccccccChhHhCccccccCCCceeeccCCCCCCCCCcceeCcCc
Confidence 5789999999999999885 4567998886431 110 11233322233 2457888887
Q ss_pred HhhC-cc-c-ccccccc-CCCchHHHHHHHHHHhhCCCCCCCCCeEEEE
Q 010322 208 ISVG-KR-V-RTETNIA-AGAVSVSSAAVELALMKLPESSHATARMLVI 252 (513)
Q Consensus 208 i~v~-k~-V-r~et~i~-~~~~Sva~~Av~la~~~~~~~~l~g~~VlVI 252 (513)
+.+. .+ + +-...++ ..|++++++|++++.. ..|++|+|.
T Consensus 140 ~~v~~~~~v~~ip~~l~~~~pl~~A~~a~~~~~~------~~G~~VlI~ 182 (184)
T d1vj0a1 140 IVLDPETDVLKVSEKITHRLPLKEANKALELMES------REALKVILY 182 (184)
T ss_dssp EEECTTCCEEEECTTCCEEEEGGGHHHHHHHHHH------TSCSCEEEE
T ss_pred EEechhHcEEECCCCCCHHHHHHHHHHHHHHhCC------CcCCEEEEe
Confidence 7663 21 2 2112222 2578999999888753 368899884
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.30 E-value=0.66 Score=43.20 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=29.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCCeEEEEeCC
Q 010322 247 ARMLVIGA-GKMGKLVIKHLVAKGCTKMVVVNRS 279 (513)
Q Consensus 247 ~~VlVIGa-G~mG~~ia~~L~~~G~~~V~v~nRs 279 (513)
|++||.|+ |-+|+.++..|...|.. |+.++|.
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~-V~~~~r~ 34 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYE-VHGLIRR 34 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCE-EEEEECC
Confidence 68999999 99999999999999985 8888874
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=80.93 E-value=2.5 Score=36.18 Aligned_cols=40 Identities=18% Similarity=0.399 Sum_probs=29.8
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEE 289 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~ 289 (513)
+|.|=|.|-||+++.+.|...+.+ |..+|-. ...+.++.-
T Consensus 2 kigINGfGRIGR~~~R~l~~~~i~-iv~INd~-~~~~~~ayL 41 (168)
T d2g82a1 2 KVGINGFGRIGRQVFRILHSRGVE-VALINDL-TDNKTLAHL 41 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCC-EEEEECS-SCHHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHhcCCCE-EEEECCC-cchhhhhhe
Confidence 689999999999999999988986 5555532 234455543
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=80.92 E-value=0.73 Score=39.18 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=25.4
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCC-eEEEEe
Q 010322 247 ARMLVIGAGKMGKLVIKHLVAKGCT-KMVVVN 277 (513)
Q Consensus 247 ~~VlVIGaG~mG~~ia~~L~~~G~~-~V~v~n 277 (513)
.+|+|||+|.+|..+|..|+..|.+ .|++..
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~ 35 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAGYQGLITVVG 35 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CCEEEECccHHHHHHHHHHHhcCCceEEEEEe
Confidence 4699999999999999999998864 344443
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=80.90 E-value=0.87 Score=37.45 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=48.1
Q ss_pred CCCeEEEEcccH-----------HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhCCcceeecc--cchHHhhc--CC
Q 010322 245 ATARMLVIGAGK-----------MGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKP--LSEMLSCA--AD 309 (513)
Q Consensus 245 ~g~~VlVIGaG~-----------mG~~ia~~L~~~G~~~V~v~nRs~~ra~~la~~~g~~~~~~~~--~~~~~~~l--~~ 309 (513)
..++|+|||+|+ .+.-+++.|+..|++ ++++|-+++...- -..... .+-+.| ++++.+.+ +.
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~-~iliN~NP~TVst-d~d~aD-~lYfePlt~e~v~~Ii~~E~ 82 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYR-VINVNSNPATIMT-DPEMAD-ATYIEPIHWEVVRKIIEKER 82 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCE-EEEECSCTTCGGG-CGGGSS-EEECSCCCHHHHHHHHHHHC
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCe-EEEecCchHhhhc-Chhhcc-eeeeecCCHHHHHHHHHHhC
Confidence 568999999997 467788899999996 8889999875410 001111 111222 23444433 47
Q ss_pred CcEEEEcCCCCccC
Q 010322 310 ADVVFTSTASEAPL 323 (513)
Q Consensus 310 aDVVI~AT~s~~~v 323 (513)
.|.|+..-|...++
T Consensus 83 pd~il~~~GGQtal 96 (127)
T d1a9xa3 83 PDAVLPTMGGQTAL 96 (127)
T ss_dssp CSEEECSSSHHHHH
T ss_pred cCCeEEEeeeehHh
Confidence 88888877776543
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=80.69 E-value=2.1 Score=36.90 Aligned_cols=72 Identities=14% Similarity=0.256 Sum_probs=51.6
Q ss_pred CCCCCeEEEEccc--HHHHHHHHHHHHcCCCeEEEEeCCH--------HHHHHHHHHhCCcceeecccchHHhhcCCCcE
Q 010322 243 SHATARMLVIGAG--KMGKLVIKHLVAKGCTKMVVVNRSE--------ERVAAICEELNGVEIIYKPLSEMLSCAADADV 312 (513)
Q Consensus 243 ~l~g~~VlVIGaG--~mG~~ia~~L~~~G~~~V~v~nRs~--------~ra~~la~~~g~~~~~~~~~~~~~~~l~~aDV 312 (513)
++.+.+|+++|=| .++...+..+...|+ +|+++.+.. +.+.......|. .+.-.++..+++.++|+
T Consensus 2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~-~l~~~~P~~~~~~~~~~~~~~~~~~~~g~---~~~~~~d~~~a~~~aDv 77 (183)
T d1duvg2 2 AFNEMTLVYAGDARNNMGNSMLEAAALTGL-DLRLVAPQACWPEAALVTECRALAQQNGG---NITLTEDVAKGVEGADF 77 (183)
T ss_dssp CGGGCEEEEESCTTSHHHHHHHHHHHHHCC-EEEEECCGGGCCCHHHHHHHHHHHHHTTC---EEEEESCHHHHHTTCSE
T ss_pred CcCCCEEEEEcCCccHHHHHHHHHHHHcCC-EEEEEechHhhhhHHHHHHHHHHHHhcCC---ceEEEechhhccccCCE
Confidence 4578899999955 688999999999998 499888731 223344444443 33345678888999999
Q ss_pred EEEcCC
Q 010322 313 VFTSTA 318 (513)
Q Consensus 313 VI~AT~ 318 (513)
|...+=
T Consensus 78 vyt~~w 83 (183)
T d1duvg2 78 IYTDVW 83 (183)
T ss_dssp EEECCS
T ss_pred EEEEeh
Confidence 988654
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=80.59 E-value=0.66 Score=37.81 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=31.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCCeEEEEeCCH
Q 010322 244 HATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSE 280 (513)
Q Consensus 244 l~g~~VlVIGaG~mG~~ia~~L~~~G~~~V~v~nRs~ 280 (513)
+.|++|+|||.|.-+.-.|..|... +++|+++.|.+
T Consensus 28 ~~gk~V~VvGgG~sA~~~A~~L~~~-a~~V~li~r~~ 63 (126)
T d1fl2a2 28 FKGKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAP 63 (126)
T ss_dssp GBTCEEEEECCSHHHHHHHHHHHTT-BSEEEEECSSS
T ss_pred cCCceEEEEeCCHHHHHHHHhhhcc-CCceEEEeccc
Confidence 5899999999999999999999887 67899998764
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.57 E-value=0.8 Score=40.78 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=26.4
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCC--eEEEEeCC
Q 010322 248 RMLVIGAGKMGKLVIKHLVAKGCT--KMVVVNRS 279 (513)
Q Consensus 248 ~VlVIGaG~mG~~ia~~L~~~G~~--~V~v~nRs 279 (513)
+|+|||+||.|..+|.++...|.+ +|.++++.
T Consensus 3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~ 36 (233)
T d1xdia1 3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCD 36 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC
Confidence 799999999999999888776653 58888864
|