Citrus Sinensis ID: 010323
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 513 | 2.2.26 [Sep-21-2011] | |||||||
| Q07423 | 510 | Hexose carrier protein HE | N/A | no | 0.990 | 0.996 | 0.754 | 0.0 | |
| Q8L7R8 | 514 | Sugar transport protein 3 | yes | no | 0.947 | 0.945 | 0.614 | 1e-170 | |
| O04249 | 513 | Sugar transport protein 7 | no | no | 0.966 | 0.966 | 0.556 | 1e-165 | |
| Q39228 | 514 | Sugar transport protein 4 | no | no | 0.968 | 0.966 | 0.587 | 1e-164 | |
| Q94AZ2 | 526 | Sugar transport protein 1 | no | no | 0.966 | 0.942 | 0.574 | 1e-164 | |
| P23586 | 522 | Sugar transport protein 1 | no | no | 0.970 | 0.954 | 0.572 | 1e-163 | |
| Q41144 | 523 | Sugar carrier protein C O | N/A | no | 0.964 | 0.946 | 0.570 | 1e-161 | |
| Q9LT15 | 514 | Sugar transport protein 1 | no | no | 0.933 | 0.931 | 0.572 | 1e-161 | |
| Q9FMX3 | 514 | Sugar transport protein 1 | no | no | 0.962 | 0.961 | 0.577 | 1e-160 | |
| Q9SX48 | 517 | Sugar transport protein 9 | no | no | 0.951 | 0.943 | 0.558 | 1e-159 |
| >sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1 | Back alignment and function desciption |
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Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/513 (75%), Positives = 448/513 (87%), Gaps = 5/513 (0%)
Query: 1 MAVGLTITSEGGQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPK 60
MA GL ITSEGGQ YNG++TSFV LSC++AA GG+IFGYD+G+SGGVTSM+PFL+KFFP
Sbjct: 1 MAAGLAITSEGGQ-YNGRMTSFVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFFPD 59
Query: 61 VYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAF 120
VYRKMKEDT ISNYCKFDSQLLTSFTSSLY+AGL+AS FASSVTRAFGR+ SIL+GG F
Sbjct: 60 VYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGXVF 119
Query: 121 LAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCT 180
LA +ALGGAA+N+YMLIFGRVLLGVG+GFANQA VPLYLSEMAPPR+RGA N G++
Sbjct: 120 LAXAALGGAAVNVYMLIFGRVLLGVGVGFANQA--VPLYLSEMAPPRYRGAINNGFQFSV 177
Query: 181 AIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQR 240
IG L+A+LINYGT+KI+GGWGWRISLAMAA PA ILT GALFLPETPNS+IQRSND +R
Sbjct: 178 GIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPETPNSLIQRSNDHER 237
Query: 241 AKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVT 300
AK MLQR+RGT DV+AE DDLIKAS I++T+ HPFK I++RKYRPQLVMA+ IPFF QVT
Sbjct: 238 AKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAVAIPFFQQVT 297
Query: 301 GINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGI 360
GINVI FYAP+LFRTI L ES SLL S++VTG +G+ ST ISM++VDKLGR+ LF+ GG+
Sbjct: 298 GINVIAFYAPILFRTIGLEESASLL-SSIVTGLVGSASTFISMLIVDKLGRRALFIFGGV 356
Query: 361 QMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPL 420
QM AQ+M+GSIM +LGD GG KG AY++L+LIC+YVAGF SWGPLG+LVPSEIFPL
Sbjct: 357 QMFVAQIMVGSIMAAELGDHGGIGKGYAYIVLILICIYVAGFGWSWGPLGWLVPSEIFPL 416
Query: 421 EIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPETKN 480
EIRSAGQSI VAV FLFTF++AQTFL+MLCHFK+GIFFFFGGWVVVMT FVHF LPETK
Sbjct: 417 EIRSAGQSIVVAVSFLFTFVVAQTFLSMLCHFKSGIFFFFGGWVVVMTAFVHFLLPETKK 476
Query: 481 VPIEQMDEVWGEHWFWKKIVG-EISEESKIQEA 512
VPIE+MD VW +HWFWKKI+G E +EE+ EA
Sbjct: 477 VPIEKMDIVWRDHWFWKKIIGEEAAEENNKMEA 509
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Active uptake of hexoses. Probable glucose/hydrogen symport. Ricinus communis (taxid: 3988) |
| >sp|Q8L7R8|STP3_ARATH Sugar transport protein 3 OS=Arabidopsis thaliana GN=STP3 PE=2 SV=2 | Back alignment and function description |
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Score = 598 bits (1541), Expect = e-170, Method: Compositional matrix adjust.
Identities = 307/500 (61%), Positives = 395/500 (79%), Gaps = 14/500 (2%)
Query: 17 GKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHI----- 71
GKIT FVV SC++AA GG+IFGYD+G+SGGV SM PFL++FFPKVY+ +ED
Sbjct: 18 GKITYFVVASCVMAAMGGVIFGYDIGVSGGVMSMGPFLKRFFPKVYKLQEEDRRRRGNSN 77
Query: 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAAL 131
++YC F+SQLLTSFTSSLY++GLIA+L ASSVTR++GR+ SI +GG +FLAG+ALGG+A
Sbjct: 78 NHYCLFNSQLLTSFTSSLYVSGLIATLLASSVTRSWGRKPSIFLGGVSFLAGAALGGSAQ 137
Query: 132 NIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLIN 191
N+ MLI R+LLGVG+GFANQ SVPLYLSEMAP ++RGA + G++LC IG L+A++IN
Sbjct: 138 NVAMLIIARLLLGVGVGFANQ--SVPLYLSEMAPAKYRGAISNGFQLCIGIGFLSANVIN 195
Query: 192 YGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGT 251
Y TQ IK GW RISLA AA PA ILTLG+LFLPETPNSIIQ + D+ + + ML+R+RGT
Sbjct: 196 YETQNIKHGW--RISLATAAIPASILTLGSLFLPETPNSIIQTTGDVHKTELMLRRVRGT 253
Query: 252 DDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPV 311
+DV+ E DL++ASS + T ++ F K++QRKYRP+LVMA++IPFF QVTGINV+ FYAPV
Sbjct: 254 NDVQDELTDLVEASSGSDTDSNAFLKLLQRKYRPELVMALVIPFFQQVTGINVVAFYAPV 313
Query: 312 LFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGS 371
L+RT+ ES SL MS +VTG +GT ST++SM++VD++GRK LFL+GG+QML +QV IG
Sbjct: 314 LYRTVGFGESGSL-MSTLVTGIVGTSSTLLSMLVVDRIGRKTLFLIGGLQMLVSQVTIGV 372
Query: 372 IMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINV 431
I+ G +G Y ++VL+CVYVAGF SWGPLG+LVPSEIFPLEIRS QS+ V
Sbjct: 373 IVMVADVHDGVIKEGYGYAVVVLVCVYVAGFGWSWGPLGWLVPSEIFPLEIRSVAQSVTV 432
Query: 432 AVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPETKNVPIEQMDEVWG 491
AV F+FTF +AQ+ MLC F+AGIFFF+GGW+VVMT V FLPETKNVPIE++ +W
Sbjct: 433 AVSFVFTFAVAQSAPPMLCKFRAGIFFFYGGWLVVMTVAVQLFLPETKNVPIEKVVGLWE 492
Query: 492 EHWFWKKIVGEISEESKIQE 511
+HWFW++ ++ + IQE
Sbjct: 493 KHWFWRR----MTSKRDIQE 508
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04249|STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 582 bits (1500), Expect = e-165, Method: Compositional matrix adjust.
Identities = 281/505 (55%), Positives = 379/505 (75%), Gaps = 9/505 (1%)
Query: 7 ITSEGGQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMK 66
+ E + Y GK+TS+V+++C+VAA GG IFGYD+GISGGVTSM+ FLE+FF VY K K
Sbjct: 11 VAKERAEQYQGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEEFFHTVYEK-K 69
Query: 67 EDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSAL 126
+ H SNYCK+D+Q L +FTSSLY+AGL+++L AS +TR +GRRASI+ GG +FL GS L
Sbjct: 70 KQAHESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGSGL 129
Query: 127 GGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILA 186
A+N+ ML+ GR++LGVGIGF NQA VPLYLSE+AP RG N+ ++L T IGI
Sbjct: 130 NAGAVNLAMLLAGRIMLGVGIGFGNQA--VPLYLSEVAPTHLRGGLNMMFQLATTIGIFT 187
Query: 187 ASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQ 246
A+++NYGTQ++K WGWR+SL +AA PAL++TLG FLPETPNS+++R +R +++L
Sbjct: 188 ANMVNYGTQQLKP-WGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLT-ERGRRVLV 245
Query: 247 RIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIG 306
++RGT++V AE D++ AS +A ++ HPF+ I+Q+++RPQLVMAI +P F +TGIN I
Sbjct: 246 KLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQILTGINSIL 305
Query: 307 FYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQ 366
FYAPVLF+T+ + SL SA+ TG + LST IS+ LVD+LGR+ L + GGIQM+ Q
Sbjct: 306 FYAPVLFQTMGFGGNASLYSSAL-TGAVLVLSTFISIGLVDRLGRRALLITGGIQMIICQ 364
Query: 367 VMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAG 426
V++ I+ + GD SKG + ++++ IC++V F SWGPLG+ +PSEIFPLE RSAG
Sbjct: 365 VIVAVILGVKFGDNQELSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFPLETRSAG 424
Query: 427 QSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPETKNVPIEQM 486
QSI VAV LFTF+IAQ FL +LC FK GIF FF GWV VMT FV+F LPETK VPIE+M
Sbjct: 425 QSITVAVNLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPETKGVPIEEM 484
Query: 487 DEVWGEHWFWKKIVGE---ISEESK 508
+W +HWFWKK++ + + +ESK
Sbjct: 485 TLLWSKHWFWKKVLPDATNLEDESK 509
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q39228|STP4_ARATH Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 580 bits (1494), Expect = e-164, Method: Compositional matrix adjust.
Identities = 296/504 (58%), Positives = 376/504 (74%), Gaps = 7/504 (1%)
Query: 1 MAVGLTITSEGGQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPK 60
MA G + G ++YN K+T V ++C + A GGLIFGYDLGISGGVTSMEPFLE+FFP
Sbjct: 1 MAGGFVSQTPGVRNYNYKLTPKVFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEFFPY 60
Query: 61 VYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAF 120
VY+KMK H + YC+FDSQLLT FTSSLY+A L++SLFAS++TR FGR+ S+ +GG F
Sbjct: 61 VYKKMK-SAHENEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTF 119
Query: 121 LAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCT 180
GSA G A NI ML+ GR+LLG G+GFANQ SVP+YLSEMAPP RGAFN G+++
Sbjct: 120 FIGSAFNGFAQNIAMLLIGRILLGFGVGFANQ--SVPVYLSEMAPPNLRGAFNNGFQVAI 177
Query: 181 AIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQR 240
GI+ A++INY T ++KG GWRISL +A PA+++ +GAL LP+TPNS+I+R +
Sbjct: 178 IFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYT-EE 236
Query: 241 AKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVT 300
AK+MLQ IRGT++V+ EF DLI AS +K V HP+K I+ +YRPQL+M IPFF Q+T
Sbjct: 237 AKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQLT 296
Query: 301 GINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGI 360
GINVI FYAPVLF+T+ SLL SA+VTG I L T +S+ VD+ GR++LFL GGI
Sbjct: 297 GINVITFYAPVLFQTLGFGSKASLL-SAMVTGIIELLCTFVSVFTVDRFGRRILFLQGGI 355
Query: 361 QMLAAQVMIGSIMENQLG--DQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIF 418
QML +Q+ IG+++ + G G K +A LI+ LIC+YVAGFA SWGPLG+LVPSEI
Sbjct: 356 QMLVSQIAIGAMIGVKFGVAGTGNIGKSDANLIVALICIYVAGFAWSWGPLGWLVPSEIS 415
Query: 419 PLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPET 478
PLEIRSA Q+INV+V FTFL+AQ FL MLCH K G+FFFF +VV+MT F++ LPET
Sbjct: 416 PLEIRSAAQAINVSVNMFFTFLVAQLFLTMLCHMKFGLFFFFAFFVVIMTIFIYLMLPET 475
Query: 479 KNVPIEQMDEVWGEHWFWKKIVGE 502
KNVPIE+M+ VW HWFW K + +
Sbjct: 476 KNVPIEEMNRVWKAHWFWGKFIPD 499
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, methylglucose, galactose, xylose and mannose, but not fructose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 579 bits (1492), Expect = e-164, Method: Compositional matrix adjust.
Identities = 289/503 (57%), Positives = 369/503 (73%), Gaps = 7/503 (1%)
Query: 8 TSEGGQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKE 67
TS G ++ KIT V++SCI+AATGGL+FGYD+G+SGGVTSM FLEKFFP VYRK+
Sbjct: 8 TSANGVEFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPVVYRKVVA 67
Query: 68 DTHI-SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSAL 126
SNYCK+D+Q L FTSSLY+AGL A+ FAS TR GRR ++L+ G F+ G AL
Sbjct: 68 GADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFFIIGVAL 127
Query: 127 GGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILA 186
A ++ MLI GR+LLG G+GFANQA VPL+LSE+AP R RG NI ++L IGIL
Sbjct: 128 NAGAQDLAMLIAGRILLGCGVGFANQA--VPLFLSEIAPTRIRGGLNILFQLNVTIGILF 185
Query: 187 ASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQ 246
A+L+NYGT KIKGGWGWR+SL +A PAL+LT+GAL + ETPNS+++R L K +L+
Sbjct: 186 ANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGR-LDEGKAVLR 244
Query: 247 RIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIG 306
RIRGTD+VE EF DL++AS +AK V HPF+ ++QR+ RPQLV+A+ + F Q TGIN I
Sbjct: 245 RIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTGINAIM 304
Query: 307 FYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQ 366
FYAPVLF T+ SL SAVVTG + LST++S+ VDK+GR+VL L G+QM +Q
Sbjct: 305 FYAPVLFSTLGFGSDASL-YSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAGVQMFFSQ 363
Query: 367 VMIGSIMENQLGDQG-GFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSA 425
V+I I+ ++ D SKG A L++V+IC YVA FA SWGPLG+L+PSE FPLE RSA
Sbjct: 364 VVIAIILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSETFPLETRSA 423
Query: 426 GQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPETKNVPIEQ 485
GQS+ V V LFTF+IAQ FL+MLCHFK GIF FF WV++M+ FV F LPETKN+PIE+
Sbjct: 424 GQSVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLPETKNIPIEE 483
Query: 486 MDE-VWGEHWFWKKIVGEISEES 507
M E VW +HWFW + + + ++
Sbjct: 484 MTERVWKKHWFWARFMDDHNDHE 506
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 575 bits (1483), Expect = e-163, Method: Compositional matrix adjust.
Identities = 289/505 (57%), Positives = 372/505 (73%), Gaps = 7/505 (1%)
Query: 1 MAVGLTITSEGGQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPK 60
M G + +G + Y GK+T FV+ +C+VAA GGLIFGYD+GISGGVTSM FL++FFP
Sbjct: 1 MPAGGFVVGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS 60
Query: 61 VYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAF 120
VYRK +ED + YC++DS LT FTSSLY+A LI+SL AS+VTR FGRR S+L GG F
Sbjct: 61 VYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILF 120
Query: 121 LAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCT 180
AG+ + G A +++MLI GR+LLG GIGFANQA VPLYLSEMAP ++RGA NIG++L
Sbjct: 121 CAGALINGFAKHVWMLIVGRILLGFGIGFANQA--VPLYLSEMAPYKYRGALNIGFQLSI 178
Query: 181 AIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQR 240
IGIL A ++NY KIKGGWGWR+SL A PALI+T+G+L LP+TPNS+I+R +
Sbjct: 179 TIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQH-EE 237
Query: 241 AKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVT 300
AK L+RIRG DDV EFDDL+ AS ++++ HP++ +++RKYRP L MA++IPFF Q+T
Sbjct: 238 AKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLT 297
Query: 301 GINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGI 360
GINVI FYAPVLF TI + S LMSAVVTG + +T++S+ VD+ GR+ LFL GG
Sbjct: 298 GINVIMFYAPVLFNTIGFTTDAS-LMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGT 356
Query: 361 QMLAAQVMIGSIMENQL---GDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEI 417
QML Q ++ + + + G G K A +++ IC+YVAGFA SWGPLG+LVPSEI
Sbjct: 357 QMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEI 416
Query: 418 FPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPE 477
FPLEIRSA QSI V+V +FTF+IAQ FL MLCH K G+F F +VVVM+ FV+ FLPE
Sbjct: 417 FPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPE 476
Query: 478 TKNVPIEQMDEVWGEHWFWKKIVGE 502
TK +PIE+M +VW HW+W + V +
Sbjct: 477 TKGIPIEEMGQVWRSHWYWSRFVED 501
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Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 569 bits (1467), Expect = e-161, Method: Compositional matrix adjust.
Identities = 287/503 (57%), Positives = 375/503 (74%), Gaps = 8/503 (1%)
Query: 2 AVGLTITSEGGQD-YNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPK 60
AVG S G + Y G +T +V ++C+VAA GGLIFGYD+GISGGVTSM+ FL+KFFP
Sbjct: 3 AVGGIPPSGGNRKVYPGNLTLYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFFPS 62
Query: 61 VYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAF 120
VYRK K D + YC++DSQ LT FTSSLY+A LIASL AS++TR FGR+ S+L GG F
Sbjct: 63 VYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGVLF 122
Query: 121 LAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCT 180
AG+ + GAA ++MLI GR+LLG GIGFANQ SVPLYLSEMAP ++RGA NIG++L
Sbjct: 123 CAGAIINGAAKAVWMLILGRILLGFGIGFANQ--SVPLYLSEMAPYKYRGALNIGFQLSI 180
Query: 181 AIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQR 240
IGIL A+++NY KIKGGWGWR+SL A PALI+T+G+L LP+TPNS+I+R +
Sbjct: 181 TIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQH-EE 239
Query: 241 AKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVT 300
A+ L+R+RG +DV+ EF DL+ AS +K V HP++ ++QRKYRP L MAI IPFF Q+T
Sbjct: 240 ARAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSMAIAIPFFQQLT 299
Query: 301 GINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGI 360
GINVI FYAPVLF TI S + LMSAV+TG + +T++S+ VDK GR+ LFL GG+
Sbjct: 300 GINVIMFYAPVLFDTIGFG-SDAALMSAVITGLVNVFATMVSIYGVDKWGRRFLFLEGGV 358
Query: 361 QMLAAQVMIGSIMENQLGDQGG---FSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEI 417
QML Q ++ + + + G G + A ++++ IC+YV+GFA SWGPLG+LVPSEI
Sbjct: 359 QMLICQAIVAACIGAKFGVDGAPGDLPQWYAVVVVLFICIYVSGFAWSWGPLGWLVPSEI 418
Query: 418 FPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPE 477
FPLEIRSA QS+NV+V FTF++AQ FL MLCH K G+F FF +V++M+ FV++FLPE
Sbjct: 419 FPLEIRSAAQSVNVSVNMFFTFVVAQVFLIMLCHLKFGLFIFFSFFVLIMSIFVYYFLPE 478
Query: 478 TKNVPIEQMDEVWGEHWFWKKIV 500
TK +PIE+M +VW +HW+W + V
Sbjct: 479 TKGIPIEEMGQVWKQHWYWSRYV 501
|
Ricinus communis (taxid: 3988) |
| >sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 569 bits (1467), Expect = e-161, Method: Compositional matrix adjust.
Identities = 278/486 (57%), Positives = 359/486 (73%), Gaps = 7/486 (1%)
Query: 19 ITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFD 78
+T+FV+++CIVAA GGL+FGYDLGISGGVTSME FL KFFP+V +MK+ H + YCKFD
Sbjct: 21 VTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQMKKAKHDTAYCKFD 80
Query: 79 SQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIF 138
+Q+L FTSSLY+A L+AS AS +TR GR+ S+ +GG AFL G+ A+N+ MLI
Sbjct: 81 NQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAFAVNVSMLII 140
Query: 139 GRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIK 198
GR+LLGVG+GFANQ S P+YLSEMAP + RGA NIG+++ IGIL A+LINYGT K+
Sbjct: 141 GRLLLGVGVGFANQ--STPVYLSEMAPAKIRGALNIGFQMAITIGILVANLINYGTSKMA 198
Query: 199 GGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEF 258
GWR+SL +AA PA+++ +G+ LP+TPNS+++R + + AKQML++IRG D+V+ EF
Sbjct: 199 QH-GWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKN-EEAKQMLKKIRGADNVDHEF 256
Query: 259 DDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKL 318
DLI A AK V +P+K I++ KYRP L+ IPFF Q+TGINVI FYAPVLF+T+
Sbjct: 257 QDLIDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFYAPVLFKTLGF 316
Query: 319 SESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLG 378
+ + LMSAV+TG + LST +S+ VD+ GR++LFL GGIQM Q+++GS + + G
Sbjct: 317 GDDAA-LMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQMFICQLLVGSFIGARFG 375
Query: 379 DQ--GGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFL 436
G + A IL ICVYVAGFA SWGPLG+LVPSEI PLEIR AGQ+INV+V
Sbjct: 376 TSGTGTLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNMF 435
Query: 437 FTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPETKNVPIEQMDEVWGEHWFW 496
FTFLI Q FL MLCH K G+F+FF V +MT F++F LPETK VPIE+M VW +HWFW
Sbjct: 436 FTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFLLPETKGVPIEEMGRVWKQHWFW 495
Query: 497 KKIVGE 502
KK + E
Sbjct: 496 KKYIPE 501
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 566 bits (1459), Expect = e-160, Method: Compositional matrix adjust.
Identities = 290/502 (57%), Positives = 374/502 (74%), Gaps = 8/502 (1%)
Query: 1 MAVGLTITSEG-GQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFP 59
MA G I G G DY G++T+FV+++CIVAA GGL+FGYD+GISGGV SME FL KFFP
Sbjct: 1 MAGGAFIDESGHGGDYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFP 60
Query: 60 KVYRKMKEDT-HISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGA 118
V R+M+ + YCK+D++LLT FTSSLY+A L AS AS++TR FGR+ S+++G
Sbjct: 61 DVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSL 120
Query: 119 AFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYEL 178
AFL+G+ L G A+N+ MLI GR+ LGVG+GFANQ SVPLYLSEMAP + RGA NIG++L
Sbjct: 121 AFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQ--SVPLYLSEMAPAKIRGALNIGFQL 178
Query: 179 CTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDL 238
IGILAA+++NY T K++ G GWR+SL +A PA+++ +G FLP+TPNSI++R N
Sbjct: 179 AITIGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNK- 237
Query: 239 QRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQ 298
++AK+MLQ+IRGT +VE EF++L A AK V HP+ I+Q +YRPQL IPFF Q
Sbjct: 238 EKAKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQ 297
Query: 299 VTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVG 358
+TGINVI FYAPVLF+TI SL+ SAV+TG + LSTI+S+ VDK GR+ LFL G
Sbjct: 298 LTGINVIMFYAPVLFKTIGFGNDASLI-SAVITGLVNVLSTIVSIYSVDKFGRRALFLQG 356
Query: 359 GIQMLAAQVMIGSIMENQLG--DQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSE 416
G QM+ Q+ +GS++ + G +G S +A +IL LIC+YVAGFA SWGPLG+LVPSE
Sbjct: 357 GFQMIVTQIAVGSMIGWKFGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSE 416
Query: 417 IFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLP 476
I PLEIRSAGQS+NV+V FTF I Q FL MLCH K G+F+FF G V++MT F++F LP
Sbjct: 417 ICPLEIRSAGQSLNVSVNMFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFLLP 476
Query: 477 ETKNVPIEQMDEVWGEHWFWKK 498
ETK VPIE+M +VW EH +W K
Sbjct: 477 ETKGVPIEEMGKVWKEHRYWGK 498
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 562 bits (1449), Expect = e-159, Method: Compositional matrix adjust.
Identities = 280/501 (55%), Positives = 370/501 (73%), Gaps = 13/501 (2%)
Query: 19 ITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFD 78
+T FV+++CIVAA GGL+FGYDLGISGGVTSME FL KFFP+V ++M E + YCKFD
Sbjct: 21 VTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEARRETAYCKFD 80
Query: 79 SQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIF 138
+QLL FTSSLY+A L +S AS+VTR +GR+ S+ VGG AFL GS A N+ MLI
Sbjct: 81 NQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGSLFNAFATNVAMLIV 140
Query: 139 GRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIK 198
GR+LLGVG+GFANQ S P+YLSEMAP + RGA NIG+++ IGIL A+LINYGT ++
Sbjct: 141 GRLLLGVGVGFANQ--STPVYLSEMAPAKIRGALNIGFQMAITIGILIANLINYGTSQMA 198
Query: 199 GGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEF 258
GWR+SL +AA PA+I+ +G+ LP+TPNS+++R ++A++MLQ+IRG D+V+ EF
Sbjct: 199 KN-GWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGK-YEQAREMLQKIRGADNVDEEF 256
Query: 259 DDLIKASSIAKTVNHPFKKIIQR-KYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIK 317
DL A AK V++P+K I Q+ KYRP LV IPFF Q+TGINVI FYAPVLF+T+
Sbjct: 257 QDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQITGINVIMFYAPVLFKTLG 316
Query: 318 LSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQL 377
++ SL+ SAV+TG + +ST++S+ VD+ GR++LFL GGIQM+ +Q+++G+++ +
Sbjct: 317 FADDASLI-SAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGIQMIVSQIVVGTLIGMKF 375
Query: 378 GDQGG--FSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGF 435
G G + A IL IC+YVAGFA SWGPLG+LVPSEI PLEIR AGQ+INV+V
Sbjct: 376 GTTGSGTLTPATADWILAFICLYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNM 435
Query: 436 LFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPETKNVPIEQMDEVWGEHWF 495
FTFLI Q FL MLCH K G+F+FFGG V VMT F++F LPETK VPIE+M VW +H F
Sbjct: 436 FFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPETKGVPIEEMGRVWKQHPF 495
Query: 496 WKKIVGEIS-----EESKIQE 511
WK+ + + + EE+ ++E
Sbjct: 496 WKRYMPDDAVIGGGEENYVKE 516
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 513 | ||||||
| 255539853 | 510 | sugar transporter, putative [Ricinus com | 0.990 | 0.996 | 0.758 | 0.0 | |
| 224129904 | 516 | predicted protein [Populus trichocarpa] | 0.996 | 0.990 | 0.725 | 0.0 | |
| 1708191 | 510 | RecName: Full=Hexose carrier protein HEX | 0.990 | 0.996 | 0.754 | 0.0 | |
| 47078687 | 508 | putative hexose transporter [Vitis vinif | 0.990 | 1.0 | 0.730 | 0.0 | |
| 225466031 | 508 | PREDICTED: hexose carrier protein HEX6 [ | 0.990 | 1.0 | 0.730 | 0.0 | |
| 147816021 | 508 | hypothetical protein VITISV_025873 [Viti | 0.990 | 1.0 | 0.730 | 0.0 | |
| 357455795 | 509 | Hexose carrier [Medicago truncatula] gi| | 0.978 | 0.986 | 0.750 | 0.0 | |
| 224139190 | 509 | predicted protein [Populus trichocarpa] | 0.992 | 1.0 | 0.761 | 0.0 | |
| 356517750 | 501 | PREDICTED: hexose carrier protein HEX6-l | 0.976 | 1.0 | 0.746 | 0.0 | |
| 356515367 | 510 | PREDICTED: hexose carrier protein HEX6-l | 0.988 | 0.994 | 0.719 | 0.0 |
| >gi|255539853|ref|XP_002510991.1| sugar transporter, putative [Ricinus communis] gi|223550106|gb|EEF51593.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/513 (75%), Positives = 449/513 (87%), Gaps = 5/513 (0%)
Query: 1 MAVGLTITSEGGQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPK 60
MA GL ITSEGGQ YNG +TSFV LSC++AA GG+IFGYD+G+SGGVTSM+PFL+KFFP
Sbjct: 1 MAAGLAITSEGGQ-YNGSMTSFVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFFPD 59
Query: 61 VYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAF 120
VYRKMKEDT ISNYCKFDSQLLTSFTSSLY+AGL+AS FASSVTRAFGR+ SIL+GGA F
Sbjct: 60 VYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGAVF 119
Query: 121 LAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCT 180
LAG+ALGGAA+N+YMLIFGRVLLGVG+GFANQA VPLYLSEMAPPR+RGA N G++
Sbjct: 120 LAGAALGGAAVNVYMLIFGRVLLGVGVGFANQA--VPLYLSEMAPPRYRGAINNGFQFSV 177
Query: 181 AIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQR 240
IG L+A+LINYGT+KI+GGWGWRISLAMAA PA ILT GALFLPETPNS+IQRSND +R
Sbjct: 178 GIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPETPNSLIQRSNDHER 237
Query: 241 AKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVT 300
AK MLQR+RGT DV+AE DDLIKAS I++T+ HPFK I++RKYRPQLVMA+ IPFF QVT
Sbjct: 238 AKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAVAIPFFQQVT 297
Query: 301 GINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGI 360
GINVI FYAP+LFRTI L ES SLL S++VTG +G+ ST ISM++VDKLGR+ LF+ GG+
Sbjct: 298 GINVIAFYAPILFRTIGLEESASLL-SSIVTGLVGSASTFISMLIVDKLGRRALFIFGGV 356
Query: 361 QMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPL 420
QM AQ+M+GSIM +LGD GG KG AY++L+LIC+YVAGF SWGPLG+LVPSEIFPL
Sbjct: 357 QMFVAQIMVGSIMAAELGDHGGIGKGYAYIVLILICIYVAGFGWSWGPLGWLVPSEIFPL 416
Query: 421 EIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPETKN 480
EIRSAGQSI VAV FLFTF++AQTFL+MLCHFK+GIFFFFGGWVVVMT FVHF LPETK
Sbjct: 417 EIRSAGQSIVVAVSFLFTFVVAQTFLSMLCHFKSGIFFFFGGWVVVMTAFVHFLLPETKK 476
Query: 481 VPIEQMDEVWGEHWFWKKIVG-EISEESKIQEA 512
VPIE+MD VW +HWFWKKI+G E +EE+ EA
Sbjct: 477 VPIEKMDIVWRDHWFWKKIIGEEAAEENNKMEA 509
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129904|ref|XP_002328832.1| predicted protein [Populus trichocarpa] gi|222839130|gb|EEE77481.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/517 (72%), Positives = 442/517 (85%), Gaps = 6/517 (1%)
Query: 1 MAVGLTITSEGGQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPK 60
MA GL I EGG +YNGK+T FV LSC++A+ GG+IFGYD+GISGGVTSMEPFL+KFFP+
Sbjct: 1 MAAGLAIAGEGG-EYNGKMTWFVALSCMMASMGGVIFGYDIGISGGVTSMEPFLKKFFPE 59
Query: 61 VYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAF 120
VY +MKEDT ISNYCKFDSQLLTSFTSSLY+AGL+AS FASS+TR FGR+ SIL GGAAF
Sbjct: 60 VYARMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFFASSITRYFGRKPSILAGGAAF 119
Query: 121 LAGSALGGAALNIYMLIFGRVLLGVGIGFANQA-----SSVPLYLSEMAPPRHRGAFNIG 175
L+GSAL GAA N+YMLIFGRVLLGVG+GFANQA +VPLYLSEMAPPR+RGA N G
Sbjct: 120 LSGSALNGAATNLYMLIFGRVLLGVGVGFANQAGAEPRRAVPLYLSEMAPPRYRGAINNG 179
Query: 176 YELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRS 235
++LC AIG+L+A+ IN+GT+KI+GGWGWRISLAM A PA LT+G+LFLPETPNS+IQR
Sbjct: 180 FQLCIAIGVLSANFINFGTEKIEGGWGWRISLAMGAIPATFLTIGSLFLPETPNSLIQRF 239
Query: 236 NDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPF 295
ND Q+AK MLQRIRGT DVEAEF+DLIKAS ++K++ HP KKIIQ+KYRPQLVMAI IPF
Sbjct: 240 NDEQKAKTMLQRIRGTTDVEAEFNDLIKASLVSKSIEHPIKKIIQKKYRPQLVMAIAIPF 299
Query: 296 FLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLF 355
F QVTGINVI FYAP+LFRTI LSES SL+MSA++ G +GT ST +SM++VDKLGR+V+
Sbjct: 300 FQQVTGINVISFYAPILFRTIGLSESVSLIMSALIAGVVGTASTFLSMLVVDKLGRRVML 359
Query: 356 LVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPS 415
+ GG+QM +Q+MIGSIM QLGD G +KG AY +L +I +YV+GFA SWGPLG+LVPS
Sbjct: 360 ICGGVQMFVSQIMIGSIMAAQLGDHGSINKGYAYFVLTMISIYVSGFAWSWGPLGWLVPS 419
Query: 416 EIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFL 475
EIFPLEIRS GQSI VAV F+FTF++AQTFLAMLCHFK+GIFFFFGGWV VMT FV+ L
Sbjct: 420 EIFPLEIRSVGQSIVVAVNFVFTFIVAQTFLAMLCHFKSGIFFFFGGWVAVMTAFVYLLL 479
Query: 476 PETKNVPIEQMDEVWGEHWFWKKIVGEISEESKIQEA 512
PETK VPIE MD VW EHWFWK+IV E ++SK++ A
Sbjct: 480 PETKKVPIEVMDRVWREHWFWKRIVEEFDDKSKMEPA 516
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1708191|sp|Q07423.1|HEX6_RICCO RecName: Full=Hexose carrier protein HEX6 gi|467319|gb|AAA79857.1| hexose carrier protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/513 (75%), Positives = 448/513 (87%), Gaps = 5/513 (0%)
Query: 1 MAVGLTITSEGGQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPK 60
MA GL ITSEGGQ YNG++TSFV LSC++AA GG+IFGYD+G+SGGVTSM+PFL+KFFP
Sbjct: 1 MAAGLAITSEGGQ-YNGRMTSFVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFFPD 59
Query: 61 VYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAF 120
VYRKMKEDT ISNYCKFDSQLLTSFTSSLY+AGL+AS FASSVTRAFGR+ SIL+GG F
Sbjct: 60 VYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGXVF 119
Query: 121 LAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCT 180
LA +ALGGAA+N+YMLIFGRVLLGVG+GFANQA VPLYLSEMAPPR+RGA N G++
Sbjct: 120 LAXAALGGAAVNVYMLIFGRVLLGVGVGFANQA--VPLYLSEMAPPRYRGAINNGFQFSV 177
Query: 181 AIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQR 240
IG L+A+LINYGT+KI+GGWGWRISLAMAA PA ILT GALFLPETPNS+IQRSND +R
Sbjct: 178 GIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPETPNSLIQRSNDHER 237
Query: 241 AKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVT 300
AK MLQR+RGT DV+AE DDLIKAS I++T+ HPFK I++RKYRPQLVMA+ IPFF QVT
Sbjct: 238 AKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAVAIPFFQQVT 297
Query: 301 GINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGI 360
GINVI FYAP+LFRTI L ES SLL S++VTG +G+ ST ISM++VDKLGR+ LF+ GG+
Sbjct: 298 GINVIAFYAPILFRTIGLEESASLL-SSIVTGLVGSASTFISMLIVDKLGRRALFIFGGV 356
Query: 361 QMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPL 420
QM AQ+M+GSIM +LGD GG KG AY++L+LIC+YVAGF SWGPLG+LVPSEIFPL
Sbjct: 357 QMFVAQIMVGSIMAAELGDHGGIGKGYAYIVLILICIYVAGFGWSWGPLGWLVPSEIFPL 416
Query: 421 EIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPETKN 480
EIRSAGQSI VAV FLFTF++AQTFL+MLCHFK+GIFFFFGGWVVVMT FVHF LPETK
Sbjct: 417 EIRSAGQSIVVAVSFLFTFVVAQTFLSMLCHFKSGIFFFFGGWVVVMTAFVHFLLPETKK 476
Query: 481 VPIEQMDEVWGEHWFWKKIVG-EISEESKIQEA 512
VPIE+MD VW +HWFWKKI+G E +EE+ EA
Sbjct: 477 VPIEKMDIVWRDHWFWKKIIGEEAAEENNKMEA 509
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|47078687|gb|AAT09978.1| putative hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/512 (73%), Positives = 441/512 (86%), Gaps = 4/512 (0%)
Query: 1 MAVGLTITSEGGQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPK 60
MAVG+ +TS GG YNG+IT FVVLSC++A GG+IFGYD+GISGGVTSM+ FL+KFFP+
Sbjct: 1 MAVGIAVTSHGGH-YNGRITLFVVLSCMMAGMGGVIFGYDIGISGGVTSMDSFLKKFFPE 59
Query: 61 VYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAF 120
VY++MKEDT ISNYCKFDSQLLTSFTSSLYIAGL+AS AS +T+ FGR+ +IL GGAAF
Sbjct: 60 VYKRMKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTILAGGAAF 119
Query: 121 LAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCT 180
L GSALGGAA N+YM+I GR+LLGVG+GFANQA VPLYLSEMAPPR+RGA N G++
Sbjct: 120 LIGSALGGAAFNVYMVILGRILLGVGVGFANQA--VPLYLSEMAPPRYRGAINNGFQFSI 177
Query: 181 AIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQR 240
+G L+A+LIN+GT+KIKGGWGWR+SLA+AA PA ILTLGALFLPETPNS+IQRS D +
Sbjct: 178 GVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRSKDYGK 237
Query: 241 AKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVT 300
A+ MLQR+RGT+DV+AE DDL+KASS+AKT+N PFKKI+QRKYRPQLVMAI IPFF QVT
Sbjct: 238 AELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKILQRKYRPQLVMAIAIPFFQQVT 297
Query: 301 GINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGI 360
GINVI FYAPVLFR I L S SLL SAVVTG +G ST ISM++VDKLGR+VLFLVGGI
Sbjct: 298 GINVIAFYAPVLFRAIGLGVSASLL-SAVVTGVVGMASTFISMLIVDKLGRRVLFLVGGI 356
Query: 361 QMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPL 420
QML +Q+M+G I+ +LGD GG SK A+L+L+LICVYVAGF SWGPLG+LVPSEIFPL
Sbjct: 357 QMLVSQIMVGGILAAELGDHGGVSKVYAFLVLLLICVYVAGFGWSWGPLGWLVPSEIFPL 416
Query: 421 EIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPETKN 480
EIRSAGQSI VAV F+FTF++AQTFL+MLCHFK+GIFFFFGGWVV+MT FV++ LPETK+
Sbjct: 417 EIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFKSGIFFFFGGWVVLMTAFVYYLLPETKS 476
Query: 481 VPIEQMDEVWGEHWFWKKIVGEISEESKIQEA 512
+PIEQMD VW EHWFWK+IV E K++ A
Sbjct: 477 IPIEQMDRVWKEHWFWKRIVVEKLSNPKMETA 508
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225466031|ref|XP_002267655.1| PREDICTED: hexose carrier protein HEX6 [Vitis vinifera] gi|310877794|gb|ADP37128.1| hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/512 (73%), Positives = 441/512 (86%), Gaps = 4/512 (0%)
Query: 1 MAVGLTITSEGGQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPK 60
MAVG+ +TS GG YNG+IT FVVLSC++A GG+IFGYD+GISGGVTSM+ FL+KFFP+
Sbjct: 1 MAVGIAVTSHGGH-YNGRITLFVVLSCMMAGMGGVIFGYDIGISGGVTSMDSFLKKFFPE 59
Query: 61 VYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAF 120
VY++MKEDT ISNYCKFDSQLLTSFTSSLYIAGL+AS AS +T+ FGR+ +IL GGAAF
Sbjct: 60 VYKRMKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTILAGGAAF 119
Query: 121 LAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCT 180
L GSALGGAA N+YM+I GR+LLGVG+GFANQA VPLYLSEMAPPR+RGA N G++
Sbjct: 120 LIGSALGGAAFNVYMVILGRILLGVGVGFANQA--VPLYLSEMAPPRYRGAINNGFQFSI 177
Query: 181 AIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQR 240
+G L+A+LIN+GT+KIKGGWGWR+SLA+AA PA ILTLGALFLPETPNS+IQRS D +
Sbjct: 178 GVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRSKDYGK 237
Query: 241 AKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVT 300
A+ MLQR+RGT+DV+AE DDL+KASS+AKT+N PFKKI+QRKYRPQLVMAI IPFF QVT
Sbjct: 238 AELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKILQRKYRPQLVMAIAIPFFQQVT 297
Query: 301 GINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGI 360
GINVI FYAPVLFR I L S SLL SAVVTG +G ST ISM++VDKLGR+VLFLVGGI
Sbjct: 298 GINVIAFYAPVLFRAIGLGVSASLL-SAVVTGVVGMASTFISMLIVDKLGRRVLFLVGGI 356
Query: 361 QMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPL 420
QML +Q+M+G I+ +LGD GG SK A+L+L+LICVYVAGF SWGPLG+LVPSEIFPL
Sbjct: 357 QMLVSQIMVGGILAAELGDHGGVSKVYAFLVLLLICVYVAGFGWSWGPLGWLVPSEIFPL 416
Query: 421 EIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPETKN 480
EIRSAGQSI VAV F+FTF++AQTFL+MLCHFK+GIFFFFGGWVV+MT FV++ LPETK+
Sbjct: 417 EIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFKSGIFFFFGGWVVLMTAFVYYLLPETKS 476
Query: 481 VPIEQMDEVWGEHWFWKKIVGEISEESKIQEA 512
+PIEQMD VW EHWFWK+IV E K++ A
Sbjct: 477 IPIEQMDRVWKEHWFWKRIVVEELSNPKMETA 508
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816021|emb|CAN72462.1| hypothetical protein VITISV_025873 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/512 (73%), Positives = 440/512 (85%), Gaps = 4/512 (0%)
Query: 1 MAVGLTITSEGGQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPK 60
MAVG+ +TS GG YNG+IT FVVLSC++A GG+IFGYD+GISGGVTSM+ FL+KFFP
Sbjct: 1 MAVGIAVTSHGGH-YNGRITLFVVLSCMMAGMGGVIFGYDIGISGGVTSMDSFLKKFFPX 59
Query: 61 VYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAF 120
VY++MKEDT ISNYCKFDSQLLTSFTSSLYIAGL+AS AS +T+ FGR+ +IL GGAAF
Sbjct: 60 VYKRMKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTILAGGAAF 119
Query: 121 LAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCT 180
L GSALGGAA N+YM+I GR+LLGVG+GFANQA VPLYLSEMAPPR+RGA N G++
Sbjct: 120 LIGSALGGAAFNVYMVILGRILLGVGVGFANQA--VPLYLSEMAPPRYRGAINNGFQFSI 177
Query: 181 AIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQR 240
+G L+A+LIN+GT+KIKGGWGWR+SLA+AA PA ILTLGALFLPETPNS+IQRS D +
Sbjct: 178 GVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRSKDYGK 237
Query: 241 AKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVT 300
A+ MLQR+RGT+DV+AE DDL+KASS+AKT+N PFKKI+QRKYRPQLVMAI IPFF QVT
Sbjct: 238 AELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKILQRKYRPQLVMAIAIPFFQQVT 297
Query: 301 GINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGI 360
GINVI FYAPVLFR I L S SLL SAVVTG +G ST ISM++VDKLGR+VLFLVGGI
Sbjct: 298 GINVIAFYAPVLFRAIGLGVSASLL-SAVVTGVVGMASTFISMLIVDKLGRRVLFLVGGI 356
Query: 361 QMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPL 420
QML +Q+M+G I+ +LGD GG SK A+L+L+LICVYVAGF SWGPLG+LVPSEIFPL
Sbjct: 357 QMLVSQIMVGGILAAELGDHGGVSKVYAFLVLLLICVYVAGFGWSWGPLGWLVPSEIFPL 416
Query: 421 EIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPETKN 480
EIRSAGQSI VAV F+FTF++AQTFL+MLCHFK+GIFFFFGGWVV+MT FV++ LPETK+
Sbjct: 417 EIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFKSGIFFFFGGWVVLMTAFVYYLLPETKS 476
Query: 481 VPIEQMDEVWGEHWFWKKIVGEISEESKIQEA 512
+PIEQMD VW EHWFWK+IV E K++ A
Sbjct: 477 IPIEQMDRVWKEHWFWKRIVVEEXSNPKMETA 508
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455795|ref|XP_003598178.1| Hexose carrier [Medicago truncatula] gi|355487226|gb|AES68429.1| Hexose carrier [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/505 (75%), Positives = 429/505 (84%), Gaps = 3/505 (0%)
Query: 1 MAVGLTITSEGGQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPK 60
MAV G+ YNGK+T V+LSC+VAATGG+IFGYD+GISGGVTSM PFLEKFFP
Sbjct: 1 MAVVEVPIPSNGRGYNGKMTPIVILSCMVAATGGIIFGYDIGISGGVTSMVPFLEKFFPD 60
Query: 61 VYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAF 120
VY KMK+D ISNYCKFDSQLLT+FTSSLYIAGL+AS FASS+TRAFGR+ SILVGGAAF
Sbjct: 61 VYTKMKQDNKISNYCKFDSQLLTTFTSSLYIAGLLASFFASSITRAFGRKPSILVGGAAF 120
Query: 121 LAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCT 180
L G+ALGGAALNIYMLI GRVLLGVGIGFANQA VPLYLSEMA PR+RGA NIG++LC
Sbjct: 121 LIGAALGGAALNIYMLILGRVLLGVGIGFANQA--VPLYLSEMALPRYRGAINIGFQLCV 178
Query: 181 AIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQR 240
IG+L+A+LIN+GT+KIK GWGWRISLAMAA PA ILTLGA FLPETPNSIIQ S + Q+
Sbjct: 179 GIGVLSANLINFGTEKIKDGWGWRISLAMAAVPATILTLGAFFLPETPNSIIQNSKNHQK 238
Query: 241 AKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVT 300
AK MLQ IRGT DV+ EF+DLI+AS ++ ++ HPFK I+QRKYRPQLVMAI IPFF Q T
Sbjct: 239 AKLMLQSIRGTHDVQQEFEDLIEASIMSNSIKHPFKNILQRKYRPQLVMAIAIPFFQQFT 298
Query: 301 GINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGI 360
GINVI FYAP+LF TI L ES SLL SAV+ G +GT ST ISM++VDKLGR+VLF+ GGI
Sbjct: 299 GINVISFYAPILFLTIGLGESASLL-SAVMVGIVGTTSTFISMLIVDKLGRRVLFISGGI 357
Query: 361 QMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPL 420
QM +Q++IGSIM QLGD G SK AYLILVLIC+YVAGFA SWGPLG+LVPSEIFPL
Sbjct: 358 QMFFSQILIGSIMAAQLGDHGEISKKYAYLILVLICIYVAGFAWSWGPLGWLVPSEIFPL 417
Query: 421 EIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPETKN 480
EIRSA QSI VAV FLFTF++AQTFL+MLCHFK G FFFFGGWVV+MT FV+F LPETKN
Sbjct: 418 EIRSAAQSITVAVNFLFTFIVAQTFLSMLCHFKYGTFFFFGGWVVIMTVFVYFLLPETKN 477
Query: 481 VPIEQMDEVWGEHWFWKKIVGEISE 505
VPIEQMD VW EH+FWK+IVG+ E
Sbjct: 478 VPIEQMDRVWREHFFWKRIVGDKIE 502
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224139190|ref|XP_002323002.1| predicted protein [Populus trichocarpa] gi|222867632|gb|EEF04763.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/512 (76%), Positives = 451/512 (88%), Gaps = 3/512 (0%)
Query: 1 MAVGLTITSEGGQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPK 60
MAV L+I S+ G NGK+T FVVLSC++AA GG+IFGYD+GI+GGVTSMEPFLEKFFPK
Sbjct: 1 MAVELSIRSDQGGLCNGKMTWFVVLSCMMAAMGGVIFGYDIGITGGVTSMEPFLEKFFPK 60
Query: 61 VYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAF 120
VYRKMKEDT ISNYCKFDSQLLTSFTSS+Y+AG IAS FASS+T+AFGR+ SIL+GGAAF
Sbjct: 61 VYRKMKEDTEISNYCKFDSQLLTSFTSSMYVAGFIASFFASSITKAFGRKPSILLGGAAF 120
Query: 121 LAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCT 180
LAG+ALGGAA N+YMLIFGRVLLGVG+GFANQA VPLYLSEMAPPR+RGA N G++
Sbjct: 121 LAGAALGGAAFNVYMLIFGRVLLGVGVGFANQA--VPLYLSEMAPPRYRGAINNGFQFSI 178
Query: 181 AIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQR 240
IG L+A+LINYGT+KIKGGWGWRISLA+AA PA ILTLGA+FLPETPNS+IQ ++D +R
Sbjct: 179 GIGALSANLINYGTEKIKGGWGWRISLALAAVPATILTLGAVFLPETPNSLIQLTDDTER 238
Query: 241 AKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVT 300
AK MLQR+RGT+DV+AE DDLIKASSI+KTV HPFKKII+RKYRPQLVMAI IPFF QVT
Sbjct: 239 AKLMLQRVRGTEDVQAELDDLIKASSISKTVEHPFKKIIKRKYRPQLVMAIAIPFFQQVT 298
Query: 301 GINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGI 360
GINVI FYAP+LFRTI L ES SL MS+VVTG +GT ST ISM++VDKLGR+ LF+ GG+
Sbjct: 299 GINVIAFYAPILFRTIGLGESASL-MSSVVTGIVGTGSTFISMLVVDKLGRRALFIFGGV 357
Query: 361 QMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPL 420
QML +Q+M+G IM QLGD GG G AY++L+LIC+YVAGF+ SWGPLG+LVPSEIFPL
Sbjct: 358 QMLVSQIMVGGIMAAQLGDHGGIGGGYAYVVLILICIYVAGFSWSWGPLGWLVPSEIFPL 417
Query: 421 EIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPETKN 480
EIRSAGQSI VAV FLFTF++AQTFLAMLCHFK+GIFFFFGGWVVVMT FV++FLPETKN
Sbjct: 418 EIRSAGQSIVVAVSFLFTFIVAQTFLAMLCHFKSGIFFFFGGWVVVMTAFVYYFLPETKN 477
Query: 481 VPIEQMDEVWGEHWFWKKIVGEISEESKIQEA 512
PIE+MD VW EH FW KIVGE+ E++KI+ A
Sbjct: 478 TPIEKMDRVWREHGFWNKIVGEMDEQTKIEAA 509
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356517750|ref|XP_003527549.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/504 (74%), Positives = 430/504 (85%), Gaps = 3/504 (0%)
Query: 1 MAVGLTITSEGGQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPK 60
MAVGL I +EG + Y+GKITS V+LSC+VAATGG+IFGYD+GISGGVTSM PFLEKFFP
Sbjct: 1 MAVGLAIANEG-RGYSGKITSIVILSCMVAATGGIIFGYDIGISGGVTSMVPFLEKFFPD 59
Query: 61 VYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAF 120
VY KMK+DT +SNYCKFDSQLLT+FTSSLYIAGLIAS FASSVTRAFGR+ SIL+GGAAF
Sbjct: 60 VYTKMKQDTKVSNYCKFDSQLLTAFTSSLYIAGLIASFFASSVTRAFGRKPSILIGGAAF 119
Query: 121 LAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCT 180
L G+ALGGAALNIYMLI GRV+LGVGIGFANQ S PLYLSEMAPPR+RGA N G++LC
Sbjct: 120 LIGAALGGAALNIYMLILGRVMLGVGIGFANQ--SAPLYLSEMAPPRYRGAINTGFQLCV 177
Query: 181 AIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQR 240
IG+L+A+L+N+GT+KIK GWGWRISL MAA PA +LT G+LFLPETPNSIIQ + Q+
Sbjct: 178 GIGVLSANLVNFGTEKIKAGWGWRISLVMAAVPASMLTFGSLFLPETPNSIIQHDKNHQK 237
Query: 241 AKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVT 300
AK MLQRIRGTDDV+ E +DLI+AS ++ ++ HPFK I+ RKYRPQLVMAI IPFF Q T
Sbjct: 238 AKLMLQRIRGTDDVQQELEDLIEASEMSNSIKHPFKNILHRKYRPQLVMAIAIPFFQQFT 297
Query: 301 GINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGI 360
GINVI FYAP+LF TI L ES SLL+SAVVTG +GT ST ISM++VD+LGR+VLF+ GGI
Sbjct: 298 GINVISFYAPILFLTIGLGESASLLLSAVVTGFVGTASTFISMLMVDRLGRRVLFISGGI 357
Query: 361 QMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPL 420
QM +QV+IGSIM QLGD G K AYLILVLIC+YVAGFA SWGPLG+LVPSEIF L
Sbjct: 358 QMFFSQVLIGSIMATQLGDHGEIDKKYAYLILVLICIYVAGFAWSWGPLGWLVPSEIFQL 417
Query: 421 EIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPETKN 480
EIRSA QSI VAV F FTF++AQTFL MLCHFK G FFFFGGWVVVMT FV+ LPET+N
Sbjct: 418 EIRSAAQSITVAVNFFFTFIVAQTFLIMLCHFKFGTFFFFGGWVVVMTAFVYLLLPETRN 477
Query: 481 VPIEQMDEVWGEHWFWKKIVGEIS 504
VPIEQMD VW EH+FWK+IVG+ S
Sbjct: 478 VPIEQMDRVWREHFFWKRIVGQRS 501
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515367|ref|XP_003526372.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/513 (71%), Positives = 437/513 (85%), Gaps = 6/513 (1%)
Query: 1 MAVGLTITSEGGQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPK 60
MAVGL ITSE GQ+ NGKIT +VVLSC++AA GG+IFGYD+GI+GGVTSMEPFL+KFF K
Sbjct: 1 MAVGLAITSESGQN-NGKITLYVVLSCMMAAMGGVIFGYDIGITGGVTSMEPFLKKFFHK 59
Query: 61 VYRKMK-EDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAA 119
VY KMK D +SNYC FDSQLLTSFTSSLY+AGL+ S FAS +T+AFGR+ SI+VGGAA
Sbjct: 60 VYLKMKLADDKVSNYCVFDSQLLTSFTSSLYVAGLVTSFFASYITKAFGRKPSIVVGGAA 119
Query: 120 FLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELC 179
FLAG+ LGGAA N+YMLI GR+LLGVG+GFANQA VPLYLSEMA PR RGA N G++L
Sbjct: 120 FLAGTGLGGAAFNVYMLIVGRLLLGVGVGFANQA--VPLYLSEMALPRLRGAINNGFQLS 177
Query: 180 TAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQ 239
IG L+A+LINYGT+KI+GGWGWR+SLAMAA PA +LTLGALFLPETPNS+IQRS+D Q
Sbjct: 178 IGIGALSANLINYGTEKIEGGWGWRMSLAMAAVPASVLTLGALFLPETPNSVIQRSHDKQ 237
Query: 240 RAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVN-HPFKKIIQRKYRPQLVMAILIPFFLQ 298
+AK MLQRIRG +DV+AE DDLIKASS +KT N K I++ +YRPQLVMA+ IPFF Q
Sbjct: 238 KAKLMLQRIRGMEDVQAELDDLIKASSPSKTNNKQSLKLILKGRYRPQLVMALAIPFFQQ 297
Query: 299 VTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVG 358
VTGINVI FYAP+LFRTI L ES SLL SAV+TG +GT ST ISM +VDKLGR+ LF++G
Sbjct: 298 VTGINVIAFYAPLLFRTIGLGESASLL-SAVMTGVVGTGSTFISMFVVDKLGRRTLFMIG 356
Query: 359 GIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIF 418
GIQM +Q ++G IM L D GG SKG A+++LV+IC+YVAGF SWGPLG+LVPSEIF
Sbjct: 357 GIQMFVSQCIVGGIMALHLKDHGGLSKGYAFVVLVMICIYVAGFGWSWGPLGWLVPSEIF 416
Query: 419 PLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPET 478
PLEIRSAGQSI VAV F+FTF++AQTFL+MLCHF++GIFFFFGGWVVVMTTFV++FLPET
Sbjct: 417 PLEIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFRSGIFFFFGGWVVVMTTFVYYFLPET 476
Query: 479 KNVPIEQMDEVWGEHWFWKKIVGEISEESKIQE 511
K+VP+EQM++VW EHWFWK+IVGE+S+ E
Sbjct: 477 KSVPLEQMEKVWQEHWFWKRIVGEVSDRQHKGE 509
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 513 | ||||||
| TAIR|locus:2151596 | 514 | AT5G61520 [Arabidopsis thalian | 0.935 | 0.933 | 0.581 | 9.3e-146 | |
| TAIR|locus:2092286 | 514 | STP4 "sugar transporter 4" [Ar | 0.964 | 0.963 | 0.555 | 3.6e-144 | |
| TAIR|locus:2202044 | 522 | STP1 "AT1G11260" [Arabidopsis | 0.966 | 0.950 | 0.544 | 9.6e-144 | |
| TAIR|locus:2092221 | 514 | AT3G19940 [Arabidopsis thalian | 0.949 | 0.947 | 0.544 | 2.4e-140 | |
| TAIR|locus:2151074 | 526 | MSS1 "AT5G26340" [Arabidopsis | 0.970 | 0.946 | 0.546 | 2.4e-140 | |
| TAIR|locus:2166781 | 514 | STP11 "sugar transporter 11" [ | 0.962 | 0.961 | 0.545 | 3e-140 | |
| TAIR|locus:2132213 | 513 | STP7 "sugar transporter protei | 0.966 | 0.966 | 0.518 | 1.7e-139 | |
| TAIR|locus:2011957 | 517 | STP9 "sugar transporter 9" [Ar | 0.941 | 0.934 | 0.533 | 5.2e-136 | |
| TAIR|locus:2195995 | 504 | STP14 "sugar transport protein | 0.972 | 0.990 | 0.470 | 5.7e-123 | |
| TAIR|locus:2009323 | 506 | AT1G34580 [Arabidopsis thalian | 0.947 | 0.960 | 0.480 | 9.5e-121 |
| TAIR|locus:2151596 AT5G61520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1424 (506.3 bits), Expect = 9.3e-146, P = 9.3e-146
Identities = 286/492 (58%), Positives = 365/492 (74%)
Query: 17 GKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHI---SN 73
GKIT FVV SC++AA GG+IFGYD+G+SGGV SM PFL++FFPKVY+ +ED SN
Sbjct: 18 GKITYFVVASCVMAAMGGVIFGYDIGVSGGVMSMGPFLKRFFPKVYKLQEEDRRRRGNSN 77
Query: 74 --YCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASIXXXXXXXXXXXXXXXXXX 131
YC F+SQLLTSFTSSLY++GLIA+L ASSVTR++GR+ SI
Sbjct: 78 NHYCLFNSQLLTSFTSSLYVSGLIATLLASSVTRSWGRKPSIFLGGVSFLAGAALGGSAQ 137
Query: 132 NIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLIN 191
N+ MLI R+LLGVG+GFANQ SVPLYLSEMAP ++RGA + G++LC IG L+A++IN
Sbjct: 138 NVAMLIIARLLLGVGVGFANQ--SVPLYLSEMAPAKYRGAISNGFQLCIGIGFLSANVIN 195
Query: 192 YGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGT 251
Y TQ IK GW RISLA AA PA ILTLG+LFLPETPNSIIQ + D+ + + ML+R+RGT
Sbjct: 196 YETQNIKHGW--RISLATAAIPASILTLGSLFLPETPNSIIQTTGDVHKTELMLRRVRGT 253
Query: 252 DDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPV 311
+DV+ E DL++ASS + T ++ F K++QRKYRP+LVMA++IPFF QVTGINV+ FYAPV
Sbjct: 254 NDVQDELTDLVEASSGSDTDSNAFLKLLQRKYRPELVMALVIPFFQQVTGINVVAFYAPV 313
Query: 312 LFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGS 371
L+RT+ ES SL MS +VTG +GT ST++SM++VD++GRK LFL+GG+QML +QV IG
Sbjct: 314 LYRTVGFGESGSL-MSTLVTGIVGTSSTLLSMLVVDRIGRKTLFLIGGLQMLVSQVTIGV 372
Query: 372 I-MENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSIN 430
I M + D G +G Y ++VL+CVYVAGF SWGPLG+LVPSEIFPLEIRS QS+
Sbjct: 373 IVMVADVHD-GVIKEGYGYAVVVLVCVYVAGFGWSWGPLGWLVPSEIFPLEIRSVAQSVT 431
Query: 431 VAVGFLFTFLIAQTFLAMLCHFKAGIXXXXXXXXXXXXXXXHFFLPETKNVPIEQMDEVW 490
VAV F+FTF +AQ+ MLC F+AGI FLPETKNVPIE++ +W
Sbjct: 432 VAVSFVFTFAVAQSAPPMLCKFRAGIFFFYGGWLVVMTVAVQLFLPETKNVPIEKVVGLW 491
Query: 491 GEHWFWKKIVGE 502
+HWFW+++ +
Sbjct: 492 EKHWFWRRMTSK 503
|
|
| TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1409 (501.1 bits), Expect = 3.6e-144, P = 3.6e-144
Identities = 279/502 (55%), Positives = 354/502 (70%)
Query: 1 MAVGLTITSEGGQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPK 60
MA G + G ++YN K+T V ++C + A GGLIFGYDLGISGGVTSMEPFLE+FFP
Sbjct: 1 MAGGFVSQTPGVRNYNYKLTPKVFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEFFPY 60
Query: 61 VYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASIXXXXXXX 120
VY+KMK H + YC+FDSQLLT FTSSLY+A L++SLFAS++TR FGR+ S+
Sbjct: 61 VYKKMKS-AHENEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTF 119
Query: 121 XXXXXXXXXXXNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCT 180
NI ML+ GR+LLG G+GFANQ SVP+YLSEMAPP RGAFN G+++
Sbjct: 120 FIGSAFNGFAQNIAMLLIGRILLGFGVGFANQ--SVPVYLSEMAPPNLRGAFNNGFQVAI 177
Query: 181 AIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQR 240
GI+ A++INY T ++KG GWRISL +A PA+++ +GAL LP+TPNS+I+R +
Sbjct: 178 IFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYT-EE 236
Query: 241 AKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVT 300
AK+MLQ IRGT++V+ EF DLI AS +K V HP+K I+ +YRPQL+M IPFF Q+T
Sbjct: 237 AKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQLT 296
Query: 301 GINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGI 360
GINVI FYAPVLF+T+ SLL SA+VTG I L T +S+ VD+ GR++LFL GGI
Sbjct: 297 GINVITFYAPVLFQTLGFGSKASLL-SAMVTGIIELLCTFVSVFTVDRFGRRILFLQGGI 355
Query: 361 QMLAAQVMIGSIMENQLG--DQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIF 418
QML +Q+ IG+++ + G G K +A LI+ LIC+YVAGFA SWGPLG+LVPSEI
Sbjct: 356 QMLVSQIAIGAMIGVKFGVAGTGNIGKSDANLIVALICIYVAGFAWSWGPLGWLVPSEIS 415
Query: 419 PLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIXXXXXXXXXXXXXXXHFFLPET 478
PLEIRSA Q+INV+V FTFL+AQ FL MLCH K G+ + LPET
Sbjct: 416 PLEIRSAAQAINVSVNMFFTFLVAQLFLTMLCHMKFGLFFFFAFFVVIMTIFIYLMLPET 475
Query: 479 KNVPIEQMDEVWGEHWFWKKIV 500
KNVPIE+M+ VW HWFW K +
Sbjct: 476 KNVPIEEMNRVWKAHWFWGKFI 497
|
|
| TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1405 (499.6 bits), Expect = 9.6e-144, P = 9.6e-144
Identities = 274/503 (54%), Positives = 352/503 (69%)
Query: 1 MAVGLTITSEGGQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPK 60
M G + +G + Y GK+T FV+ +C+VAA GGLIFGYD+GISGGVTSM FL++FFP
Sbjct: 1 MPAGGFVVGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS 60
Query: 61 VYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASIXXXXXXX 120
VYRK +ED + YC++DS LT FTSSLY+A LI+SL AS+VTR FGRR S+
Sbjct: 61 VYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILF 120
Query: 121 XXXXXXXXXXXNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCT 180
+++MLI GR+LLG GIGFANQA VPLYLSEMAP ++RGA NIG++L
Sbjct: 121 CAGALINGFAKHVWMLIVGRILLGFGIGFANQA--VPLYLSEMAPYKYRGALNIGFQLSI 178
Query: 181 AIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQR 240
IGIL A ++NY KIKGGWGWR+SL A PALI+T+G+L LP+TPNS+I+R +
Sbjct: 179 TIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQH-EE 237
Query: 241 AKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVT 300
AK L+RIRG DDV EFDDL+ AS ++++ HP++ +++RKYRP L MA++IPFF Q+T
Sbjct: 238 AKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLT 297
Query: 301 GINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGI 360
GINVI FYAPVLF TI + SL MSAVVTG + +T++S+ VD+ GR+ LFL GG
Sbjct: 298 GINVIMFYAPVLFNTIGFTTDASL-MSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGT 356
Query: 361 QMLAAQVMIGSIMENQLGDQG--G-FSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEI 417
QML Q ++ + + + G G G K A +++ IC+YVAGFA SWGPLG+LVPSEI
Sbjct: 357 QMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEI 416
Query: 418 FPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIXXXXXXXXXXXXXXXHFFLPE 477
FPLEIRSA QSI V+V +FTF+IAQ FL MLCH K G+ + FLPE
Sbjct: 417 FPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPE 476
Query: 478 TKNVPIEQMDEVWGEHWFWKKIV 500
TK +PIE+M +VW HW+W + V
Sbjct: 477 TKGIPIEEMGQVWRSHWYWSRFV 499
|
|
| TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1373 (488.4 bits), Expect = 2.4e-140, P = 2.4e-140
Identities = 269/494 (54%), Positives = 345/494 (69%)
Query: 11 GGQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTH 70
GG+ Y G +T+FV+++CIVAA GGL+FGYDLGISGGVTSME FL KFFP+V +MK+ H
Sbjct: 13 GGRSYEGGVTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQMKKAKH 72
Query: 71 ISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASIXXXXXXXXXXXXXXXXX 130
+ YCKFD+Q+L FTSSLY+A L+AS AS +TR GR+ S+
Sbjct: 73 DTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAFA 132
Query: 131 XNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLI 190
N+ MLI GR+LLGVG+GFANQ S P+YLSEMAP + RGA NIG+++ IGIL A+LI
Sbjct: 133 VNVSMLIIGRLLLGVGVGFANQ--STPVYLSEMAPAKIRGALNIGFQMAITIGILVANLI 190
Query: 191 NYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRG 250
NYGT K+ GWR+SL +AA PA+++ +G+ LP+TPNS+++R + + AKQML++IRG
Sbjct: 191 NYGTSKM-AQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKN-EEAKQMLKKIRG 248
Query: 251 TDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAP 310
D+V+ EF DLI A AK V +P+K I++ KYRP L+ IPFF Q+TGINVI FYAP
Sbjct: 249 ADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFYAP 308
Query: 311 VLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIG 370
VLF+T+ + +L MSAV+TG + LST +S+ VD+ GR++LFL GGIQM Q+++G
Sbjct: 309 VLFKTLGFGDDAAL-MSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQMFICQLLVG 367
Query: 371 SIMENQLGDQG-G-FSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQS 428
S + + G G G + A IL ICVYVAGFA SWGPLG+LVPSEI PLEIR AGQ+
Sbjct: 368 SFIGARFGTSGTGTLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEICPLEIRPAGQA 427
Query: 429 INVAVGFLFTFLIAQTFLAMLCHFKAGIXXXXXXXXXXXXXXXHFFLPETKNVPIEQMDE 488
INV+V FTFLI Q FL MLCH K G+ +F LPETK VPIE+M
Sbjct: 428 INVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFLLPETKGVPIEEMGR 487
Query: 489 VWGEHWFWKKIVGE 502
VW +HWFWKK + E
Sbjct: 488 VWKQHWFWKKYIPE 501
|
|
| TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1373 (488.4 bits), Expect = 2.4e-140, P = 2.4e-140
Identities = 276/505 (54%), Positives = 349/505 (69%)
Query: 1 MAVGLTITSEGGQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPK 60
M G TS G ++ KIT V++SCI+AATGGL+FGYD+G+SGGVTSM FLEKFFP
Sbjct: 1 MTGGGFATSANGVEFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPV 60
Query: 61 VYRKMKEDTHI-SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASIXXXXXX 119
VYRK+ SNYCK+D+Q L FTSSLY+AGL A+ FAS TR GRR ++
Sbjct: 61 VYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVF 120
Query: 120 XXXXXXXXXXXXNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELC 179
++ MLI GR+LLG G+GFANQA VPL+LSE+AP R RG NI ++L
Sbjct: 121 FIIGVALNAGAQDLAMLIAGRILLGCGVGFANQA--VPLFLSEIAPTRIRGGLNILFQLN 178
Query: 180 TAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQ 239
IGIL A+L+NYGT KIKGGWGWR+SL +A PAL+LT+GAL + ETPNS+++R L
Sbjct: 179 VTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGR-LD 237
Query: 240 RAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQV 299
K +L+RIRGTD+VE EF DL++AS +AK V HPF+ ++QR+ RPQLV+A+ + F Q
Sbjct: 238 EGKAVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQC 297
Query: 300 TGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGG 359
TGIN I FYAPVLF T+ SL SAVVTG + LST++S+ VDK+GR+VL L G
Sbjct: 298 TGINAIMFYAPVLFSTLGFGSDASLY-SAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAG 356
Query: 360 IQMLAAQVMIGSIMENQLGDQG-GFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIF 418
+QM +QV+I I+ ++ D SKG A L++V+IC YVA FA SWGPLG+L+PSE F
Sbjct: 357 VQMFFSQVVIAIILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSETF 416
Query: 419 PLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIXXXXXXXXXXXXXXXHFFLPET 478
PLE RSAGQS+ V V LFTF+IAQ FL+MLCHFK GI F LPET
Sbjct: 417 PLETRSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLPET 476
Query: 479 KNVPIEQMDE-VWGEHWFWKKIVGE 502
KN+PIE+M E VW +HWFW + + +
Sbjct: 477 KNIPIEEMTERVWKKHWFWARFMDD 501
|
|
| TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1372 (488.0 bits), Expect = 3.0e-140, P = 3.0e-140
Identities = 274/502 (54%), Positives = 349/502 (69%)
Query: 1 MAVGLTITSEG-GQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFP 59
MA G I G G DY G++T+FV+++CIVAA GGL+FGYD+GISGGV SME FL KFFP
Sbjct: 1 MAGGAFIDESGHGGDYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFP 60
Query: 60 KVYRKMKEDT-HISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASIXXXXX 118
V R+M+ + YCK+D++LLT FTSSLY+A L AS AS++TR FGR+ S+
Sbjct: 61 DVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSL 120
Query: 119 XXXXXXXXXXXXXNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYEL 178
N+ MLI GR+ LGVG+GFANQ SVPLYLSEMAP + RGA NIG++L
Sbjct: 121 AFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQ--SVPLYLSEMAPAKIRGALNIGFQL 178
Query: 179 CTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDL 238
IGILAA+++NY T K++ G GWR+SL +A PA+++ +G FLP+TPNSI++R N
Sbjct: 179 AITIGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNK- 237
Query: 239 QRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQ 298
++AK+MLQ+IRGT +VE EF++L A AK V HP+ I+Q +YRPQL IPFF Q
Sbjct: 238 EKAKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQ 297
Query: 299 VTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVG 358
+TGINVI FYAPVLF+TI SL+ SAV+TG + LSTI+S+ VDK GR+ LFL G
Sbjct: 298 LTGINVIMFYAPVLFKTIGFGNDASLI-SAVITGLVNVLSTIVSIYSVDKFGRRALFLQG 356
Query: 359 GIQMLAAQVMIGSIMENQLG--DQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSE 416
G QM+ Q+ +GS++ + G +G S +A +IL LIC+YVAGFA SWGPLG+LVPSE
Sbjct: 357 GFQMIVTQIAVGSMIGWKFGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSE 416
Query: 417 IFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIXXXXXXXXXXXXXXXHFFLP 476
I PLEIRSAGQS+NV+V FTF I Q FL MLCH K G+ +F LP
Sbjct: 417 ICPLEIRSAGQSLNVSVNMFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFLLP 476
Query: 477 ETKNVPIEQMDEVWGEHWFWKK 498
ETK VPIE+M +VW EH +W K
Sbjct: 477 ETKGVPIEEMGKVWKEHRYWGK 498
|
|
| TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1365 (485.6 bits), Expect = 1.7e-139, P = 1.7e-139
Identities = 262/505 (51%), Positives = 357/505 (70%)
Query: 7 ITSEGGQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMK 66
+ E + Y GK+TS+V+++C+VAA GG IFGYD+GISGGVTSM+ FLE+FF VY K K
Sbjct: 11 VAKERAEQYQGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEEFFHTVYEKKK 70
Query: 67 EDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASIXXXXXXXXXXXXX 126
+ H SNYCK+D+Q L +FTSSLY+AGL+++L AS +TR +GRRASI
Sbjct: 71 Q-AHESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGSGL 129
Query: 127 XXXXXNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILA 186
N+ ML+ GR++LGVGIGF NQA VPLYLSE+AP RG N+ ++L T IGI
Sbjct: 130 NAGAVNLAMLLAGRIMLGVGIGFGNQA--VPLYLSEVAPTHLRGGLNMMFQLATTIGIFT 187
Query: 187 ASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQ 246
A+++NYGTQ++K WGWR+SL +AA PAL++TLG FLPETPNS+++R +R +++L
Sbjct: 188 ANMVNYGTQQLKP-WGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLT-ERGRRVLV 245
Query: 247 RIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIG 306
++RGT++V AE D++ AS +A ++ HPF+ I+Q+++RPQLVMAI +P F +TGIN I
Sbjct: 246 KLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQILTGINSIL 305
Query: 307 FYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQ 366
FYAPVLF+T+ + SL SA+ TG + LST IS+ LVD+LGR+ L + GGIQM+ Q
Sbjct: 306 FYAPVLFQTMGFGGNASLYSSAL-TGAVLVLSTFISIGLVDRLGRRALLITGGIQMIICQ 364
Query: 367 VMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAG 426
V++ I+ + GD SKG + ++++ IC++V F SWGPLG+ +PSEIFPLE RSAG
Sbjct: 365 VIVAVILGVKFGDNQELSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFPLETRSAG 424
Query: 427 QSINVAVGFLFTFLIAQTFLAMLCHFKAGIXXXXXXXXXXXXXXXHFFLPETKNVPIEQM 486
QSI VAV LFTF+IAQ FL +LC FK GI +F LPETK VPIE+M
Sbjct: 425 QSITVAVNLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPETKGVPIEEM 484
Query: 487 DEVWGEHWFWKKIVGE---ISEESK 508
+W +HWFWKK++ + + +ESK
Sbjct: 485 TLLWSKHWFWKKVLPDATNLEDESK 509
|
|
| TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1332 (473.9 bits), Expect = 5.2e-136, P = 5.2e-136
Identities = 262/491 (53%), Positives = 344/491 (70%)
Query: 11 GGQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTH 70
GG Y G +T FV+++CIVAA GGL+FGYDLGISGGVTSME FL KFFP+V ++M E
Sbjct: 13 GGNSYEGGVTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEARR 72
Query: 71 ISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASIXXXXXXXXXXXXXXXXX 130
+ YCKFD+QLL FTSSLY+A L +S AS+VTR +GR+ S+
Sbjct: 73 ETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGSLFNAFA 132
Query: 131 XNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLI 190
N+ MLI GR+LLGVG+GFANQ S P+YLSEMAP + RGA NIG+++ IGIL A+LI
Sbjct: 133 TNVAMLIVGRLLLGVGVGFANQ--STPVYLSEMAPAKIRGALNIGFQMAITIGILIANLI 190
Query: 191 NYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRG 250
NYGT ++ GWR+SL +AA PA+I+ +G+ LP+TPNS+++R ++A++MLQ+IRG
Sbjct: 191 NYGTSQMAKN-GWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGK-YEQAREMLQKIRG 248
Query: 251 TDDVEAEFDDLIKASSIAKTVNHPFKKIIQR-KYRPQLVMAILIPFFLQVTGINVIGFYA 309
D+V+ EF DL A AK V++P+K I Q+ KYRP LV IPFF Q+TGINVI FYA
Sbjct: 249 ADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQITGINVIMFYA 308
Query: 310 PVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMI 369
PVLF+T+ ++ SL+ SAV+TG + +ST++S+ VD+ GR++LFL GGIQM+ +Q+++
Sbjct: 309 PVLFKTLGFADDASLI-SAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGIQMIVSQIVV 367
Query: 370 GSIMENQLGDQGG--FSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQ 427
G+++ + G G + A IL IC+YVAGFA SWGPLG+LVPSEI PLEIR AGQ
Sbjct: 368 GTLIGMKFGTTGSGTLTPATADWILAFICLYVAGFAWSWGPLGWLVPSEICPLEIRPAGQ 427
Query: 428 SINVAVGFLFTFLIAQTFLAMLCHFKAGIXXXXXXXXXXXXXXXHFFLPETKNVPIEQMD 487
+INV+V FTFLI Q FL MLCH K G+ +F LPETK VPIE+M
Sbjct: 428 AINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPETKGVPIEEMG 487
Query: 488 EVWGEHWFWKK 498
VW +H FWK+
Sbjct: 488 RVWKQHPFWKR 498
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| TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1209 (430.6 bits), Expect = 5.7e-123, P = 5.7e-123
Identities = 240/510 (47%), Positives = 336/510 (65%)
Query: 1 MAVGLTITSEGGQD----YNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEK 56
MA G +T EGG Y +ITS+ + +CIV + GG +FGYDLG+SGGVTSM+ FL++
Sbjct: 1 MAGG-ALTDEGGLKRAHLYEHRITSYFIFACIVGSMGGSLFGYDLGVSGGVTSMDDFLKE 59
Query: 57 FFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASIXXX 116
FFP +Y++ + + ++YCK+D+Q+LT FTSSLY AGLI++ AS VTR +GRR SI
Sbjct: 60 FFPGIYKRKQMHLNETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSILVG 119
Query: 117 XXXXXXXXXXXXXXXNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGY 176
NI MLI GR+ LG+GIGF NQA VPLYLSEMAP + RG N +
Sbjct: 120 SVSFFLGGVINAAAKNILMLILGRIFLGIGIGFGNQA--VPLYLSEMAPAKIRGTVNQLF 177
Query: 177 ELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSN 236
+L T IGIL A+LINY T++I WGWR+SL +A PA+++ LG L LPETPNS++++
Sbjct: 178 QLTTCIGILVANLINYKTEQIHP-WGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGK 236
Query: 237 DLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVM-AILIPF 295
L++AK +L ++RGT+++EAEF DL++AS A+ V +PF+ ++ R+ RPQLV+ AI +P
Sbjct: 237 -LEKAKAVLIKVRGTNNIEAEFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPA 295
Query: 296 FLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLF 355
F Q+TG+N I FYAPV+F+++ S SL+ S + + ++ I+SM DK GR+ L
Sbjct: 296 FQQLTGMNSILFYAPVMFQSLGFGGSASLISSTITNAAL-VVAAIMSMYSADKFGRRFLL 354
Query: 356 LVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPS 415
L ++M V++G + + G+ K +++VLIC++V + SWGP+G+LVPS
Sbjct: 355 LEASVEMFCYMVVVGVTLALKFGEGKELPKSLGLILVVLICLFVLAYGRSWGPMGWLVPS 414
Query: 416 EIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIXXXXXXXXXXXXXXXHFFL 475
E+FPLE RSAGQS+ V V FT LIAQ FL LCH K GI +F L
Sbjct: 415 ELFPLETRSAGQSVVVCVNLFFTALIAQCFLVSLCHLKYGIFLLFAGLILGMGSFVYFLL 474
Query: 476 PETKNVPIEQMDEVWGEHWFWKKIVGEISE 505
PETK VPIE++ +W +HW WKK V ++ E
Sbjct: 475 PETKQVPIEEVYLLWRQHWLWKKYVEDVDE 504
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| TAIR|locus:2009323 AT1G34580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1188 (423.3 bits), Expect = 9.5e-121, P = 9.5e-121
Identities = 242/504 (48%), Positives = 335/504 (66%)
Query: 3 VGLTITSEGGQDYNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVY 62
+ L ++S G D KIT+ VV+SCIVAA+ GLIFGYD+GISGGVT+M+PFLEKFFP V
Sbjct: 6 LALDVSSAGNID--AKITAAVVMSCIVAASCGLIFGYDIGISGGVTTMKPFLEKFFPSVL 63
Query: 63 RKMKE-DTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASIXXXXXXXX 121
+K E T++ YC +DSQLLT+FTSSLY+AGL+ASL AS +T A+GRR ++
Sbjct: 64 KKASEAKTNV--YCVYDSQLLTAFTSSLYVAGLVASLVASRLTAAYGRRTTMILGGFTFL 121
Query: 122 XXXXXXXXXXNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTA 181
NI MLI GR+LLG G+GF NQA+ P+YLSE+APPR RGAFNIG+ +
Sbjct: 122 FGALINGLAANIAMLISGRILLGFGVGFTNQAA--PVYLSEVAPPRWRGAFNIGFSCFIS 179
Query: 182 IGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRA 241
+G++AA+LINYGT + GW RISL +AA PA I+T+G LF+ +TP+S++ R A
Sbjct: 180 MGVVAANLINYGTDSHRNGW--RISLGLAAVPAAIMTVGCLFISDTPSSLLARGKH-DEA 236
Query: 242 KQMLQRIRGTD---DVEAEFDDLIKASSIAKTVNHPF--KKIIQRKYRPQLVMAILIPFF 296
L ++RG + DVE E +L+++S +A K I+QR+YRP LV+A++IP F
Sbjct: 237 HTSLLKLRGVENIADVETELAELVRSSQLAIEARAELFMKTILQRRYRPHLVVAVVIPCF 296
Query: 297 LQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFL 356
Q+TGI V FYAPVLFR++ +L+ + ++ G + S ++S +++D+ GR+ LF+
Sbjct: 297 QQLTGITVNAFYAPVLFRSVGFGSGPALIATFIL-GFVNLGSLLLSTMVIDRFGRRFLFI 355
Query: 357 VGGIQMLAAQVMIGSIMENQLG--DQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVP 414
GGI ML Q+ + ++ +G G KG A ++VL+C+Y AGF SWGPL +LVP
Sbjct: 356 AGGILMLLCQIAVAVLLAVTVGATGDGEMKKGYAVTVVVLLCIYAAGFGWSWGPLSWLVP 415
Query: 415 SEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIXXXXXXXXXXXXXXXHFF 474
SEIFPL+IR AGQS++VAV F TF ++QTFLA LC FK G F
Sbjct: 416 SEIFPLKIRPAGQSLSVAVNFAATFALSQTFLATLCDFKYGAFLFYGGWIFTMTIFVIMF 475
Query: 475 LPETKNVPIEQMDEVWGEHWFWKK 498
LPETK +P++ M +VW +HW+W++
Sbjct: 476 LPETKGIPVDSMYQVWEKHWYWQR 499
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q41144 | STC_RICCO | No assigned EC number | 0.5705 | 0.9649 | 0.9464 | N/A | no |
| Q8L7R8 | STP3_ARATH | No assigned EC number | 0.614 | 0.9473 | 0.9455 | yes | no |
| Q07423 | HEX6_RICCO | No assigned EC number | 0.7543 | 0.9902 | 0.9960 | N/A | no |
| Q10710 | STA_RICCO | No assigned EC number | 0.5443 | 0.9766 | 0.9597 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | HT4 | SubName- Full=Chromosome undetermined scaffold_52, whole genome shotgun sequence; (508 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00002307001 | SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (506 aa) | • | 0.481 | |||||||
 | VvSUC11 | SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotg [...] (501 aa) | • | 0.480 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 513 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-106 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 5e-93 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 3e-52 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 1e-16 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 1e-13 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-13 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 9e-12 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 8e-11 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 1e-07 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 1e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-06 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 2e-05 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 5e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-04 | |
| PRK10473 | 392 | PRK10473, PRK10473, multidrug efflux system protei | 5e-04 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 323 bits (831), Expect = e-106
Identities = 159/469 (33%), Positives = 254/469 (54%), Gaps = 26/469 (5%)
Query: 27 CIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFT 86
+VAA GG +FGYD G+ G ++ F ++F C + L
Sbjct: 2 ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGA---------CAASTVLSGLIV 52
Query: 87 SSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAA--LNIYMLIFGRVLLG 144
S + LI SLFA + FGR+ S+L+G F+ G+ L G A + YMLI GRV++G
Sbjct: 53 SIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112
Query: 145 VGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWR 204
+G+G + VP+Y+SE+AP + RGA Y+L GIL A++I G K GWR
Sbjct: 113 LGVGGISVL--VPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWR 170
Query: 205 ISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFD---DL 261
I L + PA++L +G LFLPE+P ++ + L+ A+ +L ++RG DV+ E D
Sbjct: 171 IPLGLQFVPAILLLIGLLFLPESPRWLVLKGK-LEEARAVLAKLRGVSDVDQEIQEEKDS 229
Query: 262 IKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSES 321
++ S A+ + + R +L+M +++ F Q+TGIN I +Y+P +F T+ LS+S
Sbjct: 230 LERSVEAEKASWLELFR-GKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDS 288
Query: 322 TSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQG 381
+ ++ G + + T I++ LVD+ GR+ L L+G M +++G LG
Sbjct: 289 L---LVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVA---LLGVAK 342
Query: 382 GFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLI 441
SKG + +V I +++A FA+ WGP+ +++ SE+FPL +R +I A +L FLI
Sbjct: 343 --SKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLI 400
Query: 442 AQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPETKNVPIEQMDEVW 490
F + +F F G +V+ FV FF+PETK +E++DE++
Sbjct: 401 GFLFPIITGAIGGYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
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Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 291 bits (746), Expect = 5e-93
Identities = 166/483 (34%), Positives = 256/483 (53%), Gaps = 30/483 (6%)
Query: 15 YNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNY 74
G V L ++AA GGL+FGYD G+ GG ++ F KF N
Sbjct: 18 GLGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSA------------NS 65
Query: 75 CKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGA---AL 131
+ S L S + G I +LFA ++ FGR+ S+L+ F+ G+ L G AL
Sbjct: 66 DSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFAL 125
Query: 132 NIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLIN 191
++ MLI GRVLLG+G+G A+ VP+YLSE+AP RGA Y+L GIL A
Sbjct: 126 SVEMLIVGRVLLGIGVGIASAL--VPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183
Query: 192 YGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGT 251
G + GWRI L + PA +L LG FLPE+P ++ + ++ A++ L R+RGT
Sbjct: 184 SGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGK-GRVEEARKSLARLRGT 242
Query: 252 DDVEAEFDDLIKASSIAKTVNHPFKKI-------IQRKYRPQLVMAILIPFFLQVTGINV 304
+ E D ++ I +++ + R+ R +L + +++ +F Q TGIN
Sbjct: 243 SGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINA 302
Query: 305 IGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLA 364
I +Y+P +F +S + L+S +V G + T +++ LVD+ GR+ L L+G M
Sbjct: 303 IMYYSPTIFENAGVSTDHAFLVSIIV-GAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAI 361
Query: 365 AQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRS 424
++G + + + G SK + + +V I +++A FA+ WGP+ +++ SEIFPL +R
Sbjct: 362 CLFVLGILGASFVT---GSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRP 418
Query: 425 AGQSINVAVGFLFTFLIAQTFLAMLCHFKAG-IFFFFGGWVVVMTTFVHFFLPETKNVPI 483
G SI VA +L F++ F ML G +F FFGG V+ FV+FFLPETK +
Sbjct: 419 KGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478
Query: 484 EQM 486
E++
Sbjct: 479 EEI 481
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This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 3e-52
Identities = 143/514 (27%), Positives = 234/514 (45%), Gaps = 78/514 (15%)
Query: 16 NGKITSFVVLS-CIVAATGGLIFGYDLG-ISGGVTSMEPFLEKFFPKVYRKMKEDTHISN 73
N + S + S +VA GGL+FGYD ISG V S L F + + E
Sbjct: 2 NTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVES----LNTVF-VAPQNLSES----- 51
Query: 74 YCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALN- 132
+ LL +S I +I + FGRR S+ + F SALG A
Sbjct: 52 ---AANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFI-SALGSAWPEF 107
Query: 133 ------------IYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRG---AFNIGYE 177
+ + R++ G+G+G A+ S P+Y++E+AP RG +FN +
Sbjct: 108 GFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLS--PMYIAEIAPAHIRGKLVSFN---Q 162
Query: 178 LCTAIGILAASLINYGTQKIKGG----W----GWRISLAMAAAPALILTLGALFLPETPN 229
G L +NY I W GWR A A PAL+ + F+PETP
Sbjct: 163 FAIIFGQLVVYFVNYF---IARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPR 219
Query: 230 SIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNH----PFKKIIQRKYRP 285
++ R ++A+ +L++I G + IK S F +
Sbjct: 220 YLMSRGKQ-EQAEGILRKIMGNTLATQALQE-IKHSLDHGRKTGGKLLMFGVGV------ 271
Query: 286 QLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMIL 345
+V+ +++ F Q GINV+ +YAP +F+T+ S +L + ++ G I T+++++
Sbjct: 272 -IVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMT 329
Query: 346 VDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVS 405
VDK GRK L ++G + M +G+ +++ + L+ + YVA FA+S
Sbjct: 330 VDKFGRKPLQIIGALGMAIGMFSLGTAF---------YTQAPGIVALLSMLFYVAAFAMS 380
Query: 406 WGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAM------LCHFKAGI-FF 458
WGP+ +++ SEIFP IR +I VA ++ + ++ TF M + HF G ++
Sbjct: 381 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYW 440
Query: 459 FFGGWVVVMTTFVHFFLPETKNVPIEQMDEVWGE 492
+G V+ F+ F+PETK +E+M+ +W
Sbjct: 441 IYGCMGVLAALFMWKFVPETKGKTLEEMEALWEP 474
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Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 1e-16
Identities = 79/413 (19%), Positives = 162/413 (39%), Gaps = 38/413 (9%)
Query: 78 DSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLI 137
D+ + S ++ L+ S ++ FGR+ +L+ L + N + +
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFL 184
Query: 138 FGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKI 197
R+L+G+GIG +V L E P + R ++ ++G++ L+ Y
Sbjct: 185 VFRLLVGMGIG-GIWVQAVVLNT-EFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP-- 240
Query: 198 KGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVE-- 255
WR + P + L + F+PE+P +I + ++ A ++LQRI + +
Sbjct: 241 ----DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGR-IEEALKILQRIAKINGKKLP 295
Query: 256 AEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRT 315
AE L ++ + + R P L L L +Y VL
Sbjct: 296 AEVLSLSLEKDLSSSKKQYSFLDLFRT--PNLRKTTLCLMML-WFTTAF-SYYGLVLD-L 350
Query: 316 IKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMEN 375
L ++ + ++G + + +I+++L+D+LGR+ + + +++
Sbjct: 351 GNL--GGNIYLDLFISGLVELPAKLITLLLIDRLGRR------YTMAASLLLAGVALLLL 402
Query: 376 QLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVA--- 432
+L L + G ++ + +L +E++P +R+ G +
Sbjct: 403 LF-----VPVDLYFLRTALAVLGKFGITSAFQMV-YLYTAELYPTVVRNLGVGVCSTMAR 456
Query: 433 VGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPETKNVPIEQ 485
VG + + FL L + G + ++ + FLPETK VP+ +
Sbjct: 457 VGSIIS-----PFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPE 504
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[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 1e-13
Identities = 86/348 (24%), Positives = 138/348 (39%), Gaps = 37/348 (10%)
Query: 94 LIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQA 153
+LF + GRR +L F + L A N+ L+ R L G+G+G
Sbjct: 66 AFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPN 125
Query: 154 SSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGW-----GWRISLA 208
+ +SE AP R RG IG + GW GWR
Sbjct: 126 LNA--LVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFL--------AGWLIPVFGWRSLFY 175
Query: 209 MAA-APALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSI 267
+ AP L+L L FLPE+ + ++ + + ++++ I EA+ L + +
Sbjct: 176 VGGIAPLLLLLLLMRFLPESIDFLVSKRPE--TVRRIVNAIAPQMQAEAQ-SALPEQKAT 232
Query: 268 AKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMS 327
T FK + Q K V+ L+ F L V G+ + + P L + S S +
Sbjct: 233 QGTKRSVFKALFQGKTARITVLLWLLYFMLLV-GVYFLTNWLPKLMVELGFSLSLAATGG 291
Query: 328 AVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGN 387
A+ G G + +II L D+LG +V L+ +L V + G + +
Sbjct: 292 ALFNFG-GVIGSIIFGWLADRLGPRVTALL----LLLGAVFAVLV---------GSTLFS 337
Query: 388 AYLILVLICVYVAGFAVSWGPLGFLVPS-EIFPLEIRSAGQSINVAVG 434
L+L+L +AGF V+ G G +P IR+ G + +G
Sbjct: 338 PTLLLLLGA--IAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIG 383
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[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 6e-13
Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 5/157 (3%)
Query: 69 THISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGG 128
++ + S+ + + SL A ++ FGRR +L+G F GS L
Sbjct: 23 PLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA 82
Query: 129 AALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAAS 188
A ++++L+ GR LLG+G G + ++E PP+ RG + +G L
Sbjct: 83 FASSLWLLLVGRFLLGLGGGAL--YPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGP 140
Query: 189 LINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLP 225
L+ + GWR + A L+L L LFL
Sbjct: 141 LLGGLLAES---LGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 9e-12
Identities = 67/351 (19%), Positives = 129/351 (36%), Gaps = 48/351 (13%)
Query: 86 TSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGV 145
++ + +A A ++ FGRR +L+G F G L A ++++L+ RVL G+
Sbjct: 38 LTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGL 97
Query: 146 GIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRI 205
G G A++ +++ PP RG +G L+ + +GWR
Sbjct: 98 GGGALFPAAAA--LIADWFPPEERGRALGLLSAGFGLGAALGPLLGGL---LASLFGWRA 152
Query: 206 SLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKAS 265
+ + A AL+ + A L P +R + A L
Sbjct: 153 AFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPL-------------------- 192
Query: 266 SIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLL 325
+ V+ +L+ L + Y P+ + LS + L
Sbjct: 193 -----------VPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGL 241
Query: 326 MSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSK 385
+ + G +G + ++ L D+LGR+ L+ + ++ A + + +
Sbjct: 242 LLG-LAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALL----------SLT 290
Query: 386 GNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFL 436
++ +LV + + G + + L LV S++ P E R + G L
Sbjct: 291 ESSLWLLVALLLLGFGAGLVFPALNALV-SDLAPKEERGTASGLYNTAGSL 340
|
Length = 346 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 8e-11
Identities = 121/524 (23%), Positives = 191/524 (36%), Gaps = 98/524 (18%)
Query: 24 VLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLT 83
+ ++A G YDL VT M VY H
Sbjct: 15 FRAIVIAGVGFFTDSYDLFCISLVTKM-------LGYVY------YHGKGPLPSSVSAAV 61
Query: 84 SFTSSLYIAGLIASLFASSVTRAFGRR-----ASILVGGAAFLAGSALGGAALNIYM-LI 137
+ ++S I L LF + GR+ I++ A +G + G + ++ L
Sbjct: 62 NGSAS--IGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLC 119
Query: 138 FGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINY----- 192
F R LGVGIG S++ SE A + RGA GILA +++
Sbjct: 120 FWRFWLGVGIGGDYPLSAI--ITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAG 177
Query: 193 ---------------GTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSND 237
G+ + WRI + A PAL+ L +PETP + D
Sbjct: 178 FKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKD 237
Query: 238 LQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHP-----FKKIIQRKYRPQLVMAIL 292
+++A + + +EAE D++ KAS+ A V F + ++ L+
Sbjct: 238 VEQAASDMSAV-LQVKIEAEPDEVEKAST-AVEVPKASWSDFFTHFFKWRHGKHLLGTAG 295
Query: 293 IPFFLQVTGINVIGFYAPVLFRTIKLS------------ESTSLLMSAVVTGGIGTLSTI 340
F L I FY L + + LS L +AV I T+
Sbjct: 296 SWFLLD------IAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTV 349
Query: 341 ----ISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLIC 396
+++ LVD +GRK + L+G + ++G N L G +L + ++
Sbjct: 350 PGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLG-FAYNHLSTHG-------FLAIYVLA 401
Query: 397 VYVAGFAVSWGP--LGFLVPSEIFPLEIRSAGQSINVAVGFL------FTFLIAQTFLAM 448
+ A F GP F+VP E+FP RS I+ A G F FL
Sbjct: 402 QFFANF----GPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDP 457
Query: 449 LCHFKAGIFF-----FFGGWVVVMTTFVHFFLPETKNVPIEQMD 487
+ GI+ F ++ + F +PETK +E++
Sbjct: 458 TKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELS 500
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 64/349 (18%), Positives = 118/349 (33%), Gaps = 70/349 (20%)
Query: 91 IAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIG-F 149
+ + + + +T RR +L A F+ + L A + +L+ R L G+ G F
Sbjct: 59 LGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVF 118
Query: 150 ANQASSVPLYLSEMAPPRHRGA----FNIGYELCTAIGILAASLINYGTQKIKGGWGWRI 205
+ A+++ + + PP RG G L T +G+ + + +GWR
Sbjct: 119 WSIAAAL---AARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLG-------QLFGWRA 168
Query: 206 SLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKAS 265
+ A AL+ L L+ S
Sbjct: 169 TFLAIAVLALLALLLLWK-------------------------------------LLPPS 191
Query: 266 SIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSEST-SL 324
I+ ++ P + +++ RP +++ +L F + + P L S S SL
Sbjct: 192 EISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSL 251
Query: 325 LMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFS 384
++ + G G + ++ L D+ R+ L + LA +
Sbjct: 252 VL--LAFGIAGFIGNLLGGRLADRGPRRALIAALLLLALALLA---------------LT 294
Query: 385 KGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAV 433
A L L +++ GFA S G + S+NVA
Sbjct: 295 FTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAA 343
|
Length = 394 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 68/313 (21%), Positives = 115/313 (36%), Gaps = 66/313 (21%)
Query: 135 MLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGT 194
+L+ R++ G +G + LYL+E APP RG + ++ +G+L A+L
Sbjct: 98 LLLLARLIQGFSLG--GEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLL 155
Query: 195 QKIKGG-----WGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIR 249
+ G WGWRI ++A LI L ETP
Sbjct: 156 SYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETP--------------------- 194
Query: 250 GTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYA 309
F+ KA K P + + + +P FL G+ +
Sbjct: 195 -------VFE---KAQEKHKKKRGPIAETLTKHRKP----------FLLGLGLVIATTTT 234
Query: 310 PVLFRTIKLSEST-SLLMSAVVTGGIGTLSTIISMI-------LVDKLGRKVLFLVGGIQ 361
L T + T +L +SA + LS I+ I L D++GR+ + ++ +
Sbjct: 235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVL 294
Query: 362 MLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLE 421
V + + + G+ L L+ + GP+G +P E+FP E
Sbjct: 295 AALLAVPLLMALLDS---------GSFTLFFFLVLGMALIGGMYTGPMGSFLP-ELFPTE 344
Query: 422 IRSAGQSINVAVG 434
+R G S+ +
Sbjct: 345 VRYTGASLAYNLA 357
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 37/192 (19%), Positives = 76/192 (39%), Gaps = 13/192 (6%)
Query: 285 PQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMI 344
+L++ + + FFL G + Y P+ + + + + + G G L ++ +
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 345 LVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAV 404
L D+LGR+ L L+ G+ + A +++ ++ + L+LV + + G
Sbjct: 234 LSDRLGRRRLLLLIGLLLAALGLLLLALA------------PSLALLLVALLLLGFGLGF 281
Query: 405 SWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWV 464
++ P + SE+ P E R + G L L +L G F +
Sbjct: 282 AF-PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAAL 340
Query: 465 VVMTTFVHFFLP 476
++ + LP
Sbjct: 341 ALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 11/146 (7%)
Query: 88 SLYIAG-----LIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVL 142
L +AG LI S + +T FGR+ +LVG F+ +A+ + NI +LI R L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 143 LGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWG 202
G G FA + ++++ PP RG A+G L + + G
Sbjct: 61 QGFGAAFA--LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPL---GGVLAQFLG 115
Query: 203 WR-ISLAMAAAPALILTLGALFLPET 227
WR L +A L A LPET
Sbjct: 116 WRAPFLFLAILALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 65/393 (16%), Positives = 118/393 (30%), Gaps = 35/393 (8%)
Query: 76 KFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAG--SALGGAALNI 133
+ S+ ++ + FG A + + G + L A
Sbjct: 25 GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFG--ARKTLAVFIVIWGVFTGLQAFAGAY 82
Query: 134 YMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYG 193
L RVLLG A + L ++ P R + +G + +
Sbjct: 83 VSLYILRVLLG--AAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGW 140
Query: 194 TQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDD 253
I W W + +I + L + Q + T++
Sbjct: 141 IL-IHFSWQWAFIIEGV--LGIIWGVLWLKF-------------IPDPPQ--KAKWLTEE 182
Query: 254 VEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLF 313
+ + A K + P K I+ + + V + + FL G+ + P
Sbjct: 183 EKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYL 242
Query: 314 RTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIM 373
+ A + G +G + I+ L D L R+ LV + ++ S
Sbjct: 243 VQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLS-- 300
Query: 374 ENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAV 433
L Y L L V + F + G +G+ + S+ P I + ++
Sbjct: 301 ---LLMFATNYVNIPYAALAL--VALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSL 355
Query: 434 GFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVV 466
G L + A+ A F G +VV
Sbjct: 356 GNLGGIVGPIVIGAI----AATTGSFAGALMVV 384
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 6/150 (4%)
Query: 77 FDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLA-GSALGGAALNIYM 135
+ S + G++ +L ++ GRR +L+ G A G L A ++ +
Sbjct: 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267
Query: 136 LIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQ 195
L+ +LLG G+GFA A + SE+APP RG + + ++G L+
Sbjct: 268 LLVALLLLGFGLGFAFPA--LLTLASELAPPEARGTASGLFNTFGSLGGALGPLL---AG 322
Query: 196 KIKGGWGWRISLAMAAAPALILTLGALFLP 225
+ G+ + AA AL+ L L LP
Sbjct: 323 LLLDTGGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 78 DSQLLTSFTSSLYIAGLIAS-LFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYML 136
++QL +F S+Y+AG+ A+ LFA + GR+ + G A F+ S L A +
Sbjct: 37 EAQLHIAF--SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLF 94
Query: 137 IFGRVLLGVGIGF 149
+ GR L G+G G
Sbjct: 95 LAGRFLQGIGAGC 107
|
Length = 392 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 513 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.98 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.98 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.98 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.98 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.98 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.98 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.98 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.98 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.97 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.97 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.97 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.97 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.97 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.97 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.96 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.95 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.95 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.95 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.95 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.95 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.94 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.94 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.94 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.94 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.94 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.94 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.93 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.93 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.93 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.93 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.91 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.9 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.9 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.89 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.89 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.88 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.88 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.88 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.88 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.88 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.88 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.87 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.86 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.86 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.84 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.82 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.81 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.78 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.75 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.73 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.73 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.71 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.7 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.67 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.59 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.57 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.53 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.47 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.46 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.46 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.46 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.46 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.45 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.45 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.44 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.44 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.44 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.43 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.39 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.38 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.37 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.36 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.35 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.35 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.34 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.34 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.33 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.33 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.33 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.32 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.32 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.32 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.31 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.31 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.31 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.31 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.31 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.3 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.3 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.29 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.29 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.29 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.28 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.28 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.27 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.27 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.26 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.26 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.26 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.26 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.25 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.25 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.25 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.25 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.24 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.24 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.24 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.24 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.24 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.23 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.22 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.22 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.21 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.21 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.21 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.21 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.2 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.2 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.18 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.18 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.17 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.16 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.15 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.15 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.13 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.13 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.11 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.1 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.1 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.09 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.09 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.09 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.07 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.06 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.06 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.04 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.04 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.03 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.02 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.02 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.99 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.99 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.99 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.97 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.97 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.97 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.96 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.96 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.94 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.92 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.91 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.91 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.9 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.89 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.88 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.88 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.86 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.83 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.82 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.82 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.82 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.81 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.8 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.79 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.76 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.76 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.72 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.72 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.72 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.71 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.71 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.7 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.65 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.63 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.63 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.61 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.55 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.55 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.54 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.51 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.51 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.46 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.44 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.36 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.33 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.32 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.3 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.26 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.25 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.24 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.24 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.2 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.18 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.18 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.16 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.15 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.02 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.89 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.83 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.82 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.82 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.77 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.77 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.72 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.62 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.46 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.32 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.2 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.18 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.11 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.69 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.68 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.63 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.61 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.57 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 96.41 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.21 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 96.08 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.03 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.94 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 95.82 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 94.68 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.57 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 94.37 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.26 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 93.86 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 93.34 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 92.83 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 91.58 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 91.49 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 88.93 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 87.92 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 87.36 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 84.22 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 80.19 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-46 Score=350.88 Aligned_cols=463 Identities=26% Similarity=0.452 Sum_probs=387.7
Q ss_pred CCcchHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHH
Q 010323 16 NGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLI 95 (513)
Q Consensus 16 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i 95 (513)
+++.+++....++.++++++-.||+...+|.. ...+++|..+-..+.... ..+-+.-+...+.+.+++.+|.++
T Consensus 2 ~~~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap---~~~i~~f~n~t~~~r~g~---~~s~~~~~~lwS~~vs~f~iG~~~ 75 (485)
T KOG0569|consen 2 KPKLTRRLLLAVIVATLGSFQFGYNIGVVNAP---QELIKSFINETLIERYGL---PLSDSTLDLLWSLIVSIFFIGGMI 75 (485)
T ss_pred CCCccHHHHHHHHHHHHhchhhhhhheecCch---HHHHHHHHHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888899999999999999987765 577777764444332211 111111233467788999999999
Q ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhc---hhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccch
Q 010323 96 ASLFASSVTRAFGRRASILVGGAAFLAGSALGGAA---LNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAF 172 (513)
Q Consensus 96 ~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~ 172 (513)
|+++.|.++||+|||..+.++.++..++.++..++ +++.+++++|++.|+..|..... .+.|+.|..|++.||..
T Consensus 76 Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~--~pmyl~E~sP~~~RG~~ 153 (485)
T KOG0569|consen 76 GSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGL--VPMYLTEISPKNLRGAL 153 (485)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHH--HHHHHhhcChhhhccHH
Confidence 99999999999999999999998888888777664 78899999999999999999988 99999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcccC-CccchHHHHHhhHHHHHHHHHhhcccCCChHHHHHhCCcHHHHHHHHHHHhCC
Q 010323 173 NIGYELCTAIGILAASLINYGTQKIK-GGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGT 251 (513)
Q Consensus 173 ~~~~~~~~~~G~~~~~~l~~~~~~~~-~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~ 251 (513)
....+.+..+|.+++..++.- ... ....|++.+.+..+++++..+...++||||||+..+++|.++|++.++++++.
T Consensus 154 g~~~~~~~~~g~ll~~~~~l~--~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~ 231 (485)
T KOG0569|consen 154 GTLLQIGVVIGILLGQVLGLP--SLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGK 231 (485)
T ss_pred HHHHHHHHHHHHHHHHHHccH--HhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCC
Confidence 999999999999999877532 222 23469999999999999999999999999999999766699999999999999
Q ss_pred CchHHHHHHHHHHHHhh---hhcCCcchhhccc-CchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHH
Q 010323 252 DDVEAEFDDLIKASSIA---KTVNHPFKKIIQR-KYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMS 327 (513)
Q Consensus 252 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 327 (513)
++.+.+.++..++.+++ ++++.++++++++ ..|++..+.+.+....++.+.....+|...++++.|++..++. ..
T Consensus 232 ~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~-~a 310 (485)
T KOG0569|consen 232 EDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQ-YA 310 (485)
T ss_pred CcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHH-HH
Confidence 87666655544433332 2256678888875 4566677888888888999999999999999999999999998 88
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhcccc
Q 010323 328 AVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWG 407 (513)
Q Consensus 328 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (513)
....+...++.++++.++.||.|||++++.+..++.+..+++.......... .+...+..+.+.+++.+.++.+.+
T Consensus 311 n~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~----~~~~~y~~i~~~~~~~~~f~~G~g 386 (485)
T KOG0569|consen 311 NLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF----GSWLSYLCIAAIFLFIISFAIGPG 386 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHhhhcCCC
Confidence 8889999999999999999999999999999999998888877665443100 011223457788888899999999
Q ss_pred ccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHHHHHHHHHHHhhcccCCCCCHHHHH
Q 010323 408 PLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPETKNVPIEQMD 487 (513)
Q Consensus 408 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (513)
|+.+.+.+|++|++.|+++.++...+.++..++....+..+.+..|...++.+.+.+.+..+..+.++||||+|+..|+.
T Consensus 387 pi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~ 466 (485)
T KOG0569|consen 387 PIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEII 466 (485)
T ss_pred chhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999998
Q ss_pred HHhccc
Q 010323 488 EVWGEH 493 (513)
Q Consensus 488 ~~~~~~ 493 (513)
++.++.
T Consensus 467 ~~~~~~ 472 (485)
T KOG0569|consen 467 EELEKR 472 (485)
T ss_pred HHHHhC
Confidence 887766
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=341.52 Aligned_cols=448 Identities=27% Similarity=0.494 Sum_probs=327.2
Q ss_pred chHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHH
Q 010323 19 ITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASL 98 (513)
Q Consensus 19 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~ 98 (513)
..+++...+++++++.+.++||..++++. .+.+.+.|. +.+.++++++..+.+++.+++.++..++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----------~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~ 73 (479)
T PRK10077 6 NSSYIFSITLVATLGGLLFGYDTAVISGT--VESLNTVFV----------APQNLSESAANSLLGFCVASALIGCIIGGA 73 (479)
T ss_pred cchHHHHHHHHHHHHHHhcCcccceehHh--HHHHHHHhc----------ccccccccCChhHHHHHHHHHHHHHHHHHH
Confidence 44566777777888999999999998876 345555553 345667789999999999999999999999
Q ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhc------------hhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCC
Q 010323 99 FASSVTRAFGRRASILVGGAAFLAGSALGGAA------------LNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPP 166 (513)
Q Consensus 99 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~ 166 (513)
++|+++||+|||++++++.+++.++.+.++++ ++++.+++.|+++|++.|...+. ..++++|++|+
T Consensus 74 ~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~--~~~~i~e~~~~ 151 (479)
T PRK10077 74 LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASML--SPMYIAEIAPA 151 (479)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhH--HHHHHHhhCCh
Confidence 99999999999999999999999998887763 23567889999999999999999 99999999999
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHhhhccc-----CCccchHHHHHhhHHHHHHHHHhhcccCCChHHHHHhCCcHHHH
Q 010323 167 RHRGAFNIGYELCTAIGILAASLINYGTQKI-----KGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRA 241 (513)
Q Consensus 167 ~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~-----~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~ 241 (513)
++|++++++.+.+..+|..+++.++..+... .+..+||+.|++.+++.++..+..+++||+|+++..+++ .+++
T Consensus 152 ~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~-~~~~ 230 (479)
T PRK10077 152 HIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGK-QEQA 230 (479)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCC-HHHH
Confidence 9999999999999999999998887655421 234689999999888887777667779999998877666 6666
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCch
Q 010323 242 KQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSES 321 (513)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 321 (513)
++..++..+.+..+...++..+....+++ ..+..+. ..............+....++....++.|.+.++.|.+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~ 306 (479)
T PRK10077 231 EGILRKIMGNTLATQALQEIKHSLDHGRK---TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTD 306 (479)
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHhhh---hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCc
Confidence 66666665444322222222111111110 1111111 1111112222233333444555667788988888888877
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHh
Q 010323 322 TSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAG 401 (513)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (513)
... ......++..+++.++.++++||+|||+.+..+..+..++.+.+..... .+..........++++.+
T Consensus 307 ~~~-~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~ 376 (479)
T PRK10077 307 IAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY---------TQAPGIVALLSMLFYVAA 376 (479)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh---------cCcccHHHHHHHHHHHHH
Confidence 666 6666778889999999999999999999999999888887777654421 111222333444555555
Q ss_pred hhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHH------Hhcch-hhhHHHHHHHHHHHHHHHhh
Q 010323 402 FAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAML------CHFKA-GIFFFFGGWVVVMTTFVHFF 474 (513)
Q Consensus 402 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~ 474 (513)
++..+.+..+.+++|.+|++.|+++.|+.+...++++++++.+.+.+. +..++ ..++.+++++.+..++.+++
T Consensus 377 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
T PRK10077 377 FAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF 456 (479)
T ss_pred HhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhc
Confidence 555556777778899999999999999999999999999887776554 34443 34555565666666666677
Q ss_pred cccCCCCCHHHHHHHhccccc
Q 010323 475 LPETKNVPIEQMDEVWGEHWF 495 (513)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~ 495 (513)
.||+++++.+|.++.+++..+
T Consensus 457 ~~e~~~~~~~~~~~~~~~~~~ 477 (479)
T PRK10077 457 VPETKGKTLEEMEALWEPETK 477 (479)
T ss_pred cccCCCCCHHHHHHHHhhccc
Confidence 889999988888777655543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-44 Score=353.42 Aligned_cols=445 Identities=20% Similarity=0.237 Sum_probs=315.0
Q ss_pred cCCcchHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHH
Q 010323 15 YNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGL 94 (513)
Q Consensus 15 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~ 94 (513)
++.+..++++.++.+++++.+.++||...++.+.. .+..+++ ..+.+.+..+.+++.+.+.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~--~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ig~~ 70 (502)
T TIGR00887 6 DTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTK--MLGYVYY-------------HGKGPLPSSVSAAVNGSASIGTL 70 (502)
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhc-------------cCcccchHHHHHHHHHHHHHHHH
Confidence 34677889999999999999999999999887732 1111111 01234567788999999999999
Q ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchh------HHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCC
Q 010323 95 IASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALN------IYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRH 168 (513)
Q Consensus 95 i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~ 168 (513)
++++++|+++||+|||+++.++.++..+++++++++++ ++.++++|+++|++.|...+. ...+++|++|+++
T Consensus 71 ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~--~~~~~~e~~p~~~ 148 (502)
T TIGR00887 71 AGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPL--SAIITSEFATKKW 148 (502)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHhcChhh
Confidence 99999999999999999999999999999999988866 789999999999999999998 9999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhhccc--------------------CCccchHHHHHhhHHHHHHHHHhhcccCCCh
Q 010323 169 RGAFNIGYELCTAIGILAASLINYGTQKI--------------------KGGWGWRISLAMAAAPALILTLGALFLPETP 228 (513)
Q Consensus 169 r~~~~~~~~~~~~~G~~~~~~l~~~~~~~--------------------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 228 (513)
|++++++......+|..+++.++..+... ...++||+++.+.++++++..+..+++||||
T Consensus 149 Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESp 228 (502)
T TIGR00887 149 RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETP 228 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999887654321 1124799999998888888777778899999
Q ss_pred HHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchh---HHHHHHHHHHHhhhcchhhh
Q 010323 229 NSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRP---QLVMAILIPFFLQVTGINVI 305 (513)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 305 (513)
+|+..++++.+++++.+++..+.+..+. .++..+.++++++.+.++++++++..++ +..+......+.....++..
T Consensus 229 r~l~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 307 (502)
T TIGR00887 229 RYTADVAKDVEQAASDMSAVLQVKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGV 307 (502)
T ss_pred HHHHHhCcchHHHHHHHHHHhccccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999988865666666666554321111 0110000001111123566666532211 22222223333333345566
Q ss_pred HhcHHHHHHhcCCCchhHH-----------HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHH
Q 010323 306 GFYAPVLFRTIKLSESTSL-----------LMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIME 374 (513)
Q Consensus 306 ~~~~~~~~~~~g~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 374 (513)
..+.|.++++.|++..... ........++.+++.++.++++||+|||+.++.+..+..++..++.....
T Consensus 308 ~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~ 387 (502)
T TIGR00887 308 NLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN 387 (502)
T ss_pred ccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999888888654221 01233344566778899999999999999988888777777666554321
Q ss_pred hhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhc--
Q 010323 375 NQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHF-- 452 (513)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-- 452 (513)
. .+........++.....+.+..+..+.+.+|.+|++.|+++.|+.+.+++++++++|.+.+.+.+..
T Consensus 388 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (502)
T TIGR00887 388 H----------LSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDP 457 (502)
T ss_pred h----------cchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccc
Confidence 0 0111111222222223344455666777899999999999999999999999999999999998843
Q ss_pred --------c-hhhhHHHHHHHHHHHHHHHhhcccCCCCCHHHHHH
Q 010323 453 --------K-AGIFFFFGGWVVVMTTFVHFFLPETKNVPIEQMDE 488 (513)
Q Consensus 453 --------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (513)
+ ...++++++++++..+ ..+++||+++++.+|+++
T Consensus 458 ~~~~~~~~~~~~~~~i~~~~~~~~~i-~~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 458 TKGYPTGIWMGHVLEIFALFMFLGIL-FTLLIPETKGKSLEELSG 501 (502)
T ss_pred cccccccccchHHHHHHHHHHHHHHH-HheEeccCCCCCHHhhhC
Confidence 2 2345555555554444 456779999988876553
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=350.81 Aligned_cols=425 Identities=16% Similarity=0.194 Sum_probs=320.5
Q ss_pred chHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHH
Q 010323 19 ITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASL 98 (513)
Q Consensus 19 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~ 98 (513)
..+++|.++++++++.+.+++|...++.+ .|.+.++++++..+.+++.++++++.+++++
T Consensus 161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~i--------------------lp~i~~~~gls~~~~g~l~s~~~lG~iiG~l 220 (742)
T TIGR01299 161 HGRFQWALFFVLGLALMADGVEVFVVGFV--------------------LPSAEKDLCIPDSGKGMLGLIVYLGMMVGAF 220 (742)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888899999999999887765 3444566788999999999999999999999
Q ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHH
Q 010323 99 FASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYEL 178 (513)
Q Consensus 99 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 178 (513)
++|+++||+|||+++++++++.++++++++++++++.++++|++.|++.|+..+. ..+++.|++|+++|++.++++..
T Consensus 221 i~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~--~~~~isE~~p~~~Rg~~~g~~~~ 298 (742)
T TIGR01299 221 FWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPI--VFSYFAEFLAQEKRGEHLSWLCM 298 (742)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccC----------CccchHHHHHhhHHHHHHHHHhhcccCCChHHHHHhCCcHHHHHHHHHHH
Q 010323 179 CTAIGILAASLINYGTQKIK----------GGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRI 248 (513)
Q Consensus 179 ~~~~G~~~~~~l~~~~~~~~----------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~ 248 (513)
++.+|.++++.++..+.... ...+||+.+++.++++++.++..+++||+|+|+..+++ .+++.+.++++
T Consensus 299 ~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr-~~eA~~iL~~i 377 (742)
T TIGR01299 299 FWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGK-HDEAWMILKLI 377 (742)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCC-HHHHHHHHHHH
Confidence 99999999998776544211 12479999999988888877777889999999999888 88999999988
Q ss_pred hCCCchH----HH-H--HHHHHHHHh------hhhcC------------------CcchhhcccCchhHHHHHHHHHHHh
Q 010323 249 RGTDDVE----AE-F--DDLIKASSI------AKTVN------------------HPFKKIIQRKYRPQLVMAILIPFFL 297 (513)
Q Consensus 249 ~~~~~~~----~~-~--~~~~~~~~~------~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (513)
++.+... .. . +..+..... +++.+ .+++++++...+++++++. +.+++
T Consensus 378 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~-~~wf~ 456 (742)
T TIGR01299 378 HDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLM-GVWFT 456 (742)
T ss_pred hcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHH-HHHHH
Confidence 7665321 11 0 000000000 00000 1244556555555555544 44566
Q ss_pred hhcchhhhHhcHHHHHHhc------------------------------------------CC-----C-----------
Q 010323 298 QVTGINVIGFYAPVLFRTI------------------------------------------KL-----S----------- 319 (513)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~------------------------------------------g~-----~----------- 319 (513)
...+++.+..|+|.++++. |+ +
T Consensus 457 ~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (742)
T TIGR01299 457 LSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTF 536 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccce
Confidence 6678899999999875431 00 0
Q ss_pred -----------------------------------------------------c---hhHHHHHHHHHHHHHHHHHHHHH
Q 010323 320 -----------------------------------------------------E---STSLLMSAVVTGGIGTLSTIISM 343 (513)
Q Consensus 320 -----------------------------------------------------~---~~~~~~~~~~~~~~~~~~~~~~g 343 (513)
. ....+....+..++.+++.++.+
T Consensus 537 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g 616 (742)
T TIGR01299 537 DDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSA 616 (742)
T ss_pred eeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00112345566788999999999
Q ss_pred HhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhh
Q 010323 344 ILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIR 423 (513)
Q Consensus 344 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 423 (513)
+++||+|||+++.++.++.+++.+++.+. .+....+++.++.+++.+..+ +....+++|++|++.|
T Consensus 617 ~L~Dr~GRr~~l~~~~~lsai~~ll~~~~-------------~s~~~ll~~~~l~g~~~~~~~-~~~~a~~aEl~Pt~~R 682 (742)
T TIGR01299 617 LLMDKIGRLRMLAGSMVLSCISCFFLSFG-------------NSESAMIALLCLFGGLSIAAW-NALDVLTVELYPSDKR 682 (742)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHH-------------ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCHHHH
Confidence 99999999999998888888887776654 223333444445555444444 4456777999999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHHHHHHHHHHHhhcccCCCCC
Q 010323 424 SAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPETKNVP 482 (513)
Q Consensus 424 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (513)
++++|+.+..+.+|++++|.+.+.+.+......++ +++++.+++.++.+++||++++.
T Consensus 683 gta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~-i~a~~lll~~ll~~~LPET~~~~ 740 (742)
T TIGR01299 683 ATAFGFLNALCKAAAVLGILIFGSFVGITKAAPIL-FASAALACGGLLALKLPDTRGQV 740 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHhCCCCcccc
Confidence 99999999999999999999999887754333444 44444444555556779988764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=327.56 Aligned_cols=458 Identities=37% Similarity=0.658 Sum_probs=373.7
Q ss_pred CcchHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccch--hHHHHHHHHHHHHHH
Q 010323 17 GKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDS--QLLTSFTSSLYIAGL 94 (513)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~--~~~~~~~s~~~l~~~ 94 (513)
.+.+......+..+.++.+..+++ ...+....+..+++++......+ .+. .+.+|+.++..++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~fg~~-g~~g~~s~~~~~~~~~~~~~~~~------------~~~~~~~~s~~~s~~~lga~ 103 (513)
T KOG0254|consen 37 TMISPFVILLALVAALGGLLFGYD-GDIGGISGALDFLQRFASLYDLS------------TGEYSVRQGLLTSILNLGAL 103 (513)
T ss_pred ccCceehHHHHHHHHHHHHHhCcc-cccccchhhHHHHHhcccccccc------------cchhHHHHHHHHHHHHHHHH
Confidence 445667788888889999999998 54455555555555543322111 122 577999999999999
Q ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhh
Q 010323 95 IASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNI 174 (513)
Q Consensus 95 i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 174 (513)
++++++|+++|++|||+.++++.+++.++.+++++++|+++++++|+++|+|.|..... .+.|++|..|++.||...+
T Consensus 104 ~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~--~piy~sEiap~~~RG~l~~ 181 (513)
T KOG0254|consen 104 VGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVL--APVYISEIAPAHIRGTLVS 181 (513)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhc--chhhHhhcCChhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCChHHHHHhCCcHHHHHHHHHHHhC--CC
Q 010323 175 GYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRG--TD 252 (513)
Q Consensus 175 ~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~--~~ 252 (513)
..+....+|..++..++....+. . ++||..+.+..+++++..+..+++||+|+|+.++++ .+++++.++++++ .+
T Consensus 182 ~~~l~~~~Gi~~~~~~~~~~~~~-~-~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~-~~~a~~~l~~l~g~~~~ 258 (513)
T KOG0254|consen 182 LYQLFITIGILLGYCINYGTSKV-Y-AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGR-LEEAKRSLKRLRGLSPE 258 (513)
T ss_pred HHHHHHHHHHHHHHHHhhhhccC-C-ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCC-hHHHHHHHHHHhCCCCc
Confidence 99999999999998777766554 2 589999999999999988887789999999999888 8999999999988 34
Q ss_pred chHHHHHHHHHHHHhhh---hcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHH
Q 010323 253 DVEAEFDDLIKASSIAK---TVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAV 329 (513)
Q Consensus 253 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 329 (513)
+.+.+.++.+.+...+. +.+..+++++++..+++..+...+..+.+..++....+|.+.+++..|.+... . ....
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~-~~~~ 336 (513)
T KOG0254|consen 259 DVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-F-LASI 336 (513)
T ss_pred chHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-H-HHHH
Confidence 44444444442221111 11223666666667778888899999999999999999999999999988664 3 5667
Q ss_pred HHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhcccccc
Q 010323 330 VTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPL 409 (513)
Q Consensus 330 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (513)
..++..+++..++.++.||+|||+.++.+...+.++.++++..........+ ......+..+...+++...+..++.++
T Consensus 337 ~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~f~~g~g~v 415 (513)
T KOG0254|consen 337 ILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPN-SSKGAGWLAIVFLCLFIFSFAIGWGPV 415 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-cccchhHHHHHHHHHHHHHHhcccccc
Confidence 7778888899999999999999999999999999999988876544311100 122456777888888888899999999
Q ss_pred ccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc-hhhhHHHHHHHHHHHH-HHHhhcccCCCCCHHHHH
Q 010323 410 GFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK-AGIFFFFGGWVVVMTT-FVHFFLPETKNVPIEQMD 487 (513)
Q Consensus 410 ~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 487 (513)
++.+.+|.+|.+.|+.+.++....+++.+++....+....+..+ ...+..+.+++.+... ..++++||+++++.+|++
T Consensus 416 ~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~ 495 (513)
T KOG0254|consen 416 PWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEIN 495 (513)
T ss_pred hhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHH
Confidence 99999999999999999999999999999988888877777766 6677777777777777 788899999999999999
Q ss_pred HHhccccc
Q 010323 488 EVWGEHWF 495 (513)
Q Consensus 488 ~~~~~~~~ 495 (513)
+.+.+...
T Consensus 496 ~~~~~~~~ 503 (513)
T KOG0254|consen 496 ELFEEGIK 503 (513)
T ss_pred HHHHcCCc
Confidence 87766543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=322.60 Aligned_cols=403 Identities=16% Similarity=0.218 Sum_probs=271.1
Q ss_pred HHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHH--HHHHHHHHHHHHHHHhHHH
Q 010323 26 SCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTS--FTSSLYIAGLIASLFASSV 103 (513)
Q Consensus 26 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~--~~s~~~l~~~i~~~~~g~l 103 (513)
...++.++.++++||..+++.+ .+...++|+|...+ .....+. +.++.++++.++++++|++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~--~~~i~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~ig~~~~G~l 80 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFV--AYALGKVFFPGADP--------------SVQMIAALATFSVPFLIRPLGGLFFGML 80 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhCCCCCc--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678999999999998766 34444444432100 0111222 2578889999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhchhHHH--------HHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhH
Q 010323 104 TRAFGRRASILVGGAAFLAGSALGGAALNIYM--------LIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIG 175 (513)
Q Consensus 104 ~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 175 (513)
+||+|||+++.+++++++++++++++++|++. +++.|+++|++.|..++. ..++++|++|+++|+++.++
T Consensus 81 ~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~--~~~~~~e~~p~~~Rg~~~~~ 158 (490)
T PRK10642 81 GDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTG--ASIFVAEYSPDRKRGFMGSW 158 (490)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHH--HHHHHHHhCCCCCCcHHHHH
Confidence 99999999999999999999999999999875 889999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccc-----CCccchHHHHHhhHHHHHHHHHhhcccCCChHHHHHhCCcHHHHHHHHHHHhC
Q 010323 176 YELCTAIGILAASLINYGTQKI-----KGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRG 250 (513)
Q Consensus 176 ~~~~~~~G~~~~~~l~~~~~~~-----~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~ 250 (513)
...+..+|..+++.+...+... ...+|||+.|++.++++++..++...+||+|++...+++ .++..
T Consensus 159 ~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~-~~~~~-------- 229 (490)
T PRK10642 159 LDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDK-LEQGD-------- 229 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHh-hhhhc--------
Confidence 9988888888888665444321 124799999999877766655556678999986533221 00000
Q ss_pred CCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHH-hcCCCchhHHHHHHH
Q 010323 251 TDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFR-TIKLSESTSLLMSAV 329 (513)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~ 329 (513)
.+...++++.++++++++ .+++... .....+.....++....|.|.+++ ..|++..... ....
T Consensus 230 -------------~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~-~~~~ 293 (490)
T PRK10642 230 -------------REGLQDGPKVSFKEIATK-HWRSLLT-CIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGV-LIII 293 (490)
T ss_pred -------------cccccccccCCHHHHHHH-hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHH
Confidence 000001123345555543 2222222 222223333455667778888885 4688777665 6666
Q ss_pred HHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhcccccc
Q 010323 330 VTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPL 409 (513)
Q Consensus 330 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (513)
...++.+++.++.|+++||+|||+.+..+.....+....+.... ...+........++.+++.+...+..
T Consensus 294 ~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~g~~ 363 (490)
T PRK10642 294 AIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI----------NSNVIGLIFAGLLMLAVILNCFTGVM 363 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788889999999999999999988777654443332222111 11222333333344444333333333
Q ss_pred ccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc-hhhhHHHHHHHHHHHHHHHhhcccCCCCC
Q 010323 410 GFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK-AGIFFFFGGWVVVMTTFVHFFLPETKNVP 482 (513)
Q Consensus 410 ~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (513)
..+..|.+|++.|+++.|+.+....+++.++|.+.+.+.+..+ +.....+..+..+++++..++.||++++.
T Consensus 364 -~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~ 436 (490)
T PRK10642 364 -ASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRP 436 (490)
T ss_pred -HHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 3444689999999999998777788888899999999887654 23222233334444444556678876543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=315.89 Aligned_cols=445 Identities=36% Similarity=0.644 Sum_probs=316.8
Q ss_pred CcchHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHH
Q 010323 17 GKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIA 96 (513)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~ 96 (513)
.+.+|+.+..++++.++.+..++|...++..........++ +...+-+.+..+.+++.+++.++..++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~ 87 (481)
T TIGR00879 20 GSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKF------------TSANSDSYSSSLWGLVVSIFLVGGFIG 87 (481)
T ss_pred CcccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhc------------CCcccCCCChhHHHHHHHHHHHHHHHH
Confidence 34556777777778888889999998887763222211111 111223457899999999999999999
Q ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhc---hhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchh
Q 010323 97 SLFASSVTRAFGRRASILVGGAAFLAGSALGGAA---LNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFN 173 (513)
Q Consensus 97 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~ 173 (513)
++++|+++||+|||+++.++.+++.++.+++.+. .+++.+++.|+++|++.+...+. ...++.|++|+++|++++
T Consensus 88 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~--~~~~i~~~~~~~~r~~~~ 165 (481)
T TIGR00879 88 ALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASAL--VPMYLSEIAPKALRGALT 165 (481)
T ss_pred HHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhH--HHHHHHccCChhhhhhhh
Confidence 9999999999999999999999999999998554 44568999999999999999998 889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHH---hhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCChHHHHHhCCcHHHHHHHHHHHhC
Q 010323 174 IGYELCTAIGILAASLIN---YGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRG 250 (513)
Q Consensus 174 ~~~~~~~~~G~~~~~~l~---~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~ 250 (513)
++...+..+|..+++.++ .... +..+||+.|++.++..++..+..+++||+|++...+++ .+++++..++...
T Consensus 166 ~~~~~~~~~G~~~~~~~~~~~~~~~---~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~ 241 (481)
T TIGR00879 166 SLYQLAITFGILVAYGFGSGKVSLN---NTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGR-VEEARKSLARLRG 241 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCC---CCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCC-hHHHHHHHHHHhC
Confidence 999999999999999997 3322 23589999999777777666667779999988766655 4444444444333
Q ss_pred CCchHHHHHHH----HHHHH-hhhhcCCcchhhcccC--chhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhH
Q 010323 251 TDDVEAEFDDL----IKASS-IAKTVNHPFKKIIQRK--YRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTS 323 (513)
Q Consensus 251 ~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 323 (513)
.+..+.+..+. ..... +.+..+..+++.++.. ..++.++...+..+..........++.|.+.++.|++..+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 321 (481)
T TIGR00879 242 TSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHA 321 (481)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHH
Confidence 32211111110 00000 1111112233333221 23555666666666666666677888899999999988666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhh
Q 010323 324 LLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFA 403 (513)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (513)
. .......++.+++.++.+++.||++||+.+..+..+..++.+.+........... .....+.......++..+++
T Consensus 322 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 397 (481)
T TIGR00879 322 F-LVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGS---SKSSGNVAIVFILLFIAFFA 397 (481)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCc---ccchhHHHHHHHHHHHHHHH
Confidence 6 7788888899999999999999999999998887777777666653221110000 00113334444455555666
Q ss_pred ccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhh-hHHHHHHHHHHHHHHHhhcccCCCCC
Q 010323 404 VSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGI-FFFFGGWVVVMTTFVHFFLPETKNVP 482 (513)
Q Consensus 404 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (513)
....+....++.|.+|++.|+++.|+.+...+++++++|.+.+.+.++.++.. ++..++++++.+++..++.||+++++
T Consensus 398 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~ 477 (481)
T TIGR00879 398 MGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRT 477 (481)
T ss_pred ccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCC
Confidence 66667777777899999999999999999999999999999999999877544 44555555555665666677766554
Q ss_pred H
Q 010323 483 I 483 (513)
Q Consensus 483 ~ 483 (513)
.
T Consensus 478 ~ 478 (481)
T TIGR00879 478 L 478 (481)
T ss_pred h
Confidence 3
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=285.54 Aligned_cols=374 Identities=17% Similarity=0.198 Sum_probs=291.4
Q ss_pred HHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhHHH
Q 010323 24 VLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSV 103 (513)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l 103 (513)
+..++.+.++.|..+.+..+.... .|.|.+|+|+|..+.|++.|.|.+++.+++++...+
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gL--------------------Lp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~l 71 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGL--------------------LPPIAADLGVSEGAAGQLITAYALGVALGAPLLALL 71 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhc--------------------hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444566677777777666555 577899999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHH
Q 010323 104 TRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIG 183 (513)
Q Consensus 104 ~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 183 (513)
.||+.||++++..+.++.++++++++++||+.++++|++.|+..|..++. ..++..+..|+++|++++++...+..++
T Consensus 72 t~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i--~~~~a~~lvpp~~~~~Aiaiv~~G~tlA 149 (394)
T COG2814 72 TGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSI--AAALAARLVPPGKRGRALALVFTGLTLA 149 (394)
T ss_pred HcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHcCccchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhc-ccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHH
Q 010323 184 ILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGAL-FLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLI 262 (513)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (513)
.++|.++|.++.+. +|||..|++.+.++++..+..+ .+| |+..
T Consensus 150 ~v~GvPLGt~ig~~---~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~------------------------------- 193 (394)
T COG2814 150 TVLGVPLGTFLGQL---FGWRATFLAIAVLALLALLLLWKLLP--PSEI------------------------------- 193 (394)
T ss_pred HHHhccHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHhCC--CccC-------------------------------
Confidence 99999999998877 6899999999999998776554 488 2100
Q ss_pred HHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 010323 263 KASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIIS 342 (513)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (513)
.++.+.+.++.++..++++.........+.....+..+++.-|.+.+..|++.+... .....++++.++|+.++
T Consensus 194 -----~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs-~~Ll~~Gv~~~~Gn~~g 267 (394)
T COG2814 194 -----SGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVS-LVLLAFGIAGFIGNLLG 267 (394)
T ss_pred -----CCCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHH-HHHHHHHHHHHHHHHHH
Confidence 011122233333333334445545454444444455556666666677889988888 89999999999999999
Q ss_pred HHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhh
Q 010323 343 MILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEI 422 (513)
Q Consensus 343 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 422 (513)
|++.|| +.|+.+.....+..+..+.+.+.. .+.+.......+.++......... ....++.. ++.
T Consensus 268 Grl~dr-~~~~~l~~~~~l~a~~~l~l~~~~------------~~~~~~~~~~~~wg~a~~~~~~~~-~~~~a~~~-p~~ 332 (394)
T COG2814 268 GRLADR-GPRRALIAALLLLALALLALTFTG------------ASPALALALLFLWGFAFSPALQGL-QTRLARLA-PDA 332 (394)
T ss_pred hhhccc-cchhHHHHHHHHHHHHHHHHHHhc------------chHHHHHHHHHHHHHHhhhhhhHH-HHHhcccC-CCc
Confidence 999999 888888888777777777766652 344454554555444433332222 22223433 588
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHHHHHHHHHHHhhcc
Q 010323 423 RSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLP 476 (513)
Q Consensus 423 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (513)
++.+.+++....++|..+|..+.|.+.|+.++......+++..+.+....+...
T Consensus 333 ~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 333 ADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999887777777776666666655543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=362.09 Aligned_cols=442 Identities=33% Similarity=0.643 Sum_probs=346.1
Q ss_pred HHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhh
Q 010323 29 VAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFG 108 (513)
Q Consensus 29 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G 108 (513)
++.++.+.+|||...++.......+...+..+.... +.+.+..+.+++.+...+|..+|++++|+++||+|
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~G 74 (451)
T PF00083_consen 4 IASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSES---------SCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYG 74 (451)
T ss_pred eeHHHHHHHHHHHHHHhhHHhhhhhhhccccccccc---------cccchHHHHHHHHHHHHhhhccccccccccccccc
Confidence 456677999999999887755444444443222111 11125678899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhch---hHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHH
Q 010323 109 RRASILVGGAAFLAGSALGGAAL---NIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGIL 185 (513)
Q Consensus 109 rr~~l~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 185 (513)
||+++.++.++..+++++.++++ +++.+.++|++.|++.|...+. ...++.|..|+++|++..++.+.+..+|..
T Consensus 75 Rk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~--~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~ 152 (451)
T PF00083_consen 75 RKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVV--SPIYISEIAPPKHRGFLSSLFQLFWALGIL 152 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccc
Confidence 99999999999999999999999 9999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 010323 186 AASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKAS 265 (513)
Q Consensus 186 ~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (513)
++..++.......++.+||..+++..+++++..+..+++||||+|+..++| .+||++.+++.++.+..+.+.++..++.
T Consensus 153 ~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~-~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 231 (451)
T PF00083_consen 153 LASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGR-DEEAEKVLRKLRGKEIEDEEIEEIKAEK 231 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccceeccccc-cccccccccccccccccccccccccccc
Confidence 999887766544444679999999999998887778889999999998888 6699999888776655555544444443
Q ss_pred HhhhhcCCcchhhcccCc-hhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 010323 266 SIAKTVNHPFKKIIQRKY-RPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMI 344 (513)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 344 (513)
++.++.+.+++++++.+. +++......+..+....+.....++.+.+.++.+.+.. . .......+...++.+++.+
T Consensus 232 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~ 308 (451)
T PF00083_consen 232 KESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--F-LATLILGLVNFLGTLLAIF 308 (451)
T ss_pred ccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc--c-ccccccccccccccccccc
Confidence 333333356777776543 45566666666666666767778888888888888776 2 3444556777788888889
Q ss_pred hhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhh
Q 010323 345 LVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRS 424 (513)
Q Consensus 345 l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 424 (513)
+.||+|||+.++.+...+.++...+....... ... +.......+....+...+++.++.+..+.+++|.+|++.|+
T Consensus 309 ~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~ 384 (451)
T PF00083_consen 309 LIDRFGRRKLLIIGLLLMAICSLILGIIFFLG--VSS--SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRS 384 (451)
T ss_pred cccccccccccccccccccccccccccccccc--ccc--ccccccccceeeeeccccccccccccccccccccccccccc
Confidence 99999999999998888887777665110000 000 00113334444455555666677788888889999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHhHHHHHhcc-hhhhHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHH
Q 010323 425 AGQSINVAVGFLFTFLIAQTFLAMLCHFK-AGIFFFFGGWVVVMTTFVHFFLPETKNVPIEQMDEV 489 (513)
Q Consensus 425 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (513)
++.|+....+++++++.+.+...+.+..+ ...+.++++++.+..++.++++||+++++.+|+++.
T Consensus 385 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 385 TGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred cccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 99999999999999999999998888877 777888888888888888999999999999998875
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=310.59 Aligned_cols=387 Identities=18% Similarity=0.301 Sum_probs=280.6
Q ss_pred ccccccccccc---hhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Q 010323 68 DTHISNYCKFD---SQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLG 144 (513)
Q Consensus 68 ~~~i~~~~~~s---~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 144 (513)
.+.+.+|+|++ ..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.+++++++|++.+++.|++.|
T Consensus 112 ~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G 191 (505)
T TIGR00898 112 SSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG 191 (505)
T ss_pred cccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 46788999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhccc
Q 010323 145 VGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFL 224 (513)
Q Consensus 145 i~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 224 (513)
++.+...+. ...++.|++|+++|+++.++...+..+|.++++.+++.+. +||+.+++.+++.++..+..+++
T Consensus 192 ~~~~~~~~~--~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~wr~~~~~~~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 192 MGIGGIWVQ--AVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWRWLQLAVSLPTFLFFLLSWFV 263 (505)
T ss_pred hhccchHHH--HHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998 8999999999999999999999999999999999987653 39999999999888877777789
Q ss_pred CCChHHHHHhCCcHHHHHHHHHHHhCCCchH--HHHHHHH-HHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcc
Q 010323 225 PETPNSIIQRSNDLQRAKQMLQRIRGTDDVE--AEFDDLI-KASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTG 301 (513)
Q Consensus 225 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (513)
||+|+|+..+++ .+++.+.+++..+.+... .+..+.. ++...+++++.+++++++++..+...+...+..+.....
T Consensus 264 ~esp~~l~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 342 (505)
T TIGR00898 264 PESPRWLISQGR-IEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFS 342 (505)
T ss_pred CCChHHHHHCCC-HHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 999999988887 677777666654433211 1111111 111111112345666665544333333333333322222
Q ss_pred hhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCC
Q 010323 302 INVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQG 381 (513)
Q Consensus 302 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (513)
++. .+.+.+..+.+.. ......++..+++.++.+++.||+|||+.+.++.++.+++.+++.+.
T Consensus 343 ~~~----~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~--------- 405 (505)
T TIGR00898 343 YYG----LVLDLGNLGGNIY----LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV--------- 405 (505)
T ss_pred HHH----HhccccccCCChH----HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc---------
Confidence 222 2223334444422 34445667888999999999999999999998888877777665543
Q ss_pred CCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHH
Q 010323 382 GFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFG 461 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (513)
+....+......++.+++....+ +..+.+.+|.+|++.|+++.|+.+..+.+|++++|.+.+ +.+......+.+++
T Consensus 406 --~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~ 481 (505)
T TIGR00898 406 --PVDLYFLRTALAVLGKFGITSAF-QMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFG 481 (505)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHH-HHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHH
Confidence 11222333344444444444443 344667789999999999999999999999999999988 44333344444444
Q ss_pred HHHHHHHHHHHhhcccCCCCCHHH
Q 010323 462 GWVVVMTTFVHFFLPETKNVPIEQ 485 (513)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~ 485 (513)
+...+ +.+..+++||+++++++|
T Consensus 482 ~~~~~-~~~~~~~lpet~~~~l~~ 504 (505)
T TIGR00898 482 GLALL-AGILTLFLPETKGVPLPE 504 (505)
T ss_pred HHHHH-HHHHHHcCcCCCCCCCCC
Confidence 44444 444456789988876543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=287.08 Aligned_cols=400 Identities=14% Similarity=0.087 Sum_probs=302.3
Q ss_pred CcchHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHH
Q 010323 17 GKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIA 96 (513)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~ 96 (513)
++.+++++.+...+.+|+...++.+-.++.+ .|.|.+|.++|.+|.|++.++++++|.++
T Consensus 21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~~a--------------------~p~l~e~~~lsk~~lG~i~s~f~i~YG~s 80 (448)
T COG2271 21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFNLA--------------------MPALIEDGGLSKTQLGILGSAFSITYGVS 80 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc--------------------cHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 4456677888888899999999998888777 57778888899999999999999999999
Q ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHH
Q 010323 97 SLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGY 176 (513)
Q Consensus 97 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 176 (513)
-++.|.++||.++|+.+.+++++.++.+++++++++++.+.+.-+++|..+|..+|. +...++.|+++++||+..+++
T Consensus 81 Kf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp--~~~~i~~Wfsr~eRG~~~siW 158 (448)
T COG2271 81 KFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPP--CARTITHWFSRKERGTWWSIW 158 (448)
T ss_pred HHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcH--HHHHHHHHcCccccCceEEEe
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH--hhhcccCCccchHHHHHhhHHHHHHHHHhhcc-cCCChHHHHHhCCcHHHHHHHHHHHhCCCc
Q 010323 177 ELCTAIGILAASLIN--YGTQKIKGGWGWRISLAMAAAPALILTLGALF-LPETPNSIIQRSNDLQRAKQMLQRIRGTDD 253 (513)
Q Consensus 177 ~~~~~~G~~~~~~l~--~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (513)
+++.++|..+.|++. +.+.. +.+||..|++.++++++..+..++ .+|+|+.. -....+..+
T Consensus 159 n~shNiGGal~~~~~~la~~~~---~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~---------GLP~ie~~~---- 222 (448)
T COG2271 159 NTSHNIGGALAPLVALLAFFAF---HGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE---------GLPPIEEYR---- 222 (448)
T ss_pred hhhhhcccchHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc---------CCCCHHHhh----
Confidence 999999999999887 44433 247999999999998887665554 88888421 000011111
Q ss_pred hHHHHHHHHHH-HHhhhhcCCcchhhc-ccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHh-cCCCchhHHHHHHHH
Q 010323 254 VEAEFDDLIKA-SSIAKTVNHPFKKII-QRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRT-IKLSESTSLLMSAVV 330 (513)
Q Consensus 254 ~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~ 330 (513)
++..+. .++++++..+.++++ +...+++.++.+.+........-+.+..|.|.|+.+ .|++...+. ...+.
T Consensus 223 -----~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~-~a~~l 296 (448)
T COG2271 223 -----GDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKAN-WAISL 296 (448)
T ss_pred -----cCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHH-HHHHH
Confidence 111111 111111113344444 455678888888888888888889999999999855 788888888 88899
Q ss_pred HHHHHHHHHHHHHHhhhcc--CcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccc
Q 010323 331 TGGIGTLSTIISMILVDKL--GRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGP 408 (513)
Q Consensus 331 ~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (513)
+-.++++|+++.||++||+ |||....+.+.+.....+...+.. +..+.+...+++...++... +...
T Consensus 297 fE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~----------~~~~~~l~~~~l~~iGf~Iy-GPqm 365 (448)
T COG2271 297 FEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA----------PNGSYLLDAILLFIIGFLIY-GPQM 365 (448)
T ss_pred HHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC----------CCccHHHHHHHHHHHHHHHh-hHHH
Confidence 9999999999999999996 566555444433333333332221 22333444444444443322 2122
Q ss_pred cccceecccCChhhhhhHhHHHHHHHHH-HHHHHHHHhHHHHHhcchhhhHHHHHHHHHHHHHH
Q 010323 409 LGFLVPSEIFPLEIRSAGQSINVAVGFL-FTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFV 471 (513)
Q Consensus 409 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (513)
+.-..+.|..|.+..|++.|+...++++ |...+....+++.|.+|+...+++..++.+++.+.
T Consensus 366 LiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~ll 429 (448)
T COG2271 366 LIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILL 429 (448)
T ss_pred HHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHH
Confidence 3345557999999999999999999999 88888899999989888655444444444444333
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=296.02 Aligned_cols=393 Identities=19% Similarity=0.203 Sum_probs=258.1
Q ss_pred cCCcchHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhH---HHHHHHHHHH
Q 010323 15 YNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQL---LTSFTSSLYI 91 (513)
Q Consensus 15 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~---~~~~~s~~~l 91 (513)
.....+++++.....++++.+++++|...++.+ .+.+.++++|. +.+..+ .+.+.+..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 74 (432)
T PRK10406 12 LTSSDTRRRIWAIVGASSGNLVEWFDFYVYSFC--SLYFAHIFFPS---------------GNTTTQLLQTAGVFAAGFL 74 (432)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCC---------------CCchHHHHHHHHHHHHHHH
Confidence 344455666666667788999999999998766 34444444331 123343 3444455556
Q ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHH--------HHHHHHHHHHhhhhhhhhcccccceeecc
Q 010323 92 AGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIY--------MLIFGRVLLGVGIGFANQASSVPLYLSEM 163 (513)
Q Consensus 92 ~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~ 163 (513)
+..++++++|+++||+|||+++..+.++++++++++++++++. .+++.|+++|++.|..++. ..++++|+
T Consensus 75 ~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~--~~~~i~e~ 152 (432)
T PRK10406 75 MRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGT--SATYMSEV 152 (432)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhh--HHHHHHHh
Confidence 6669999999999999999999999999999999999998864 5889999999999999999 99999999
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccC-----CccchHHHHHhhHHHHHHHHHhhcccCCChHHHHHhCCcH
Q 010323 164 APPRHRGAFNIGYELCTAIGILAASLINYGTQKIK-----GGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDL 238 (513)
Q Consensus 164 ~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~ 238 (513)
+|+++|+++.++...+...|.++++.+...+.... ..+|||++|++.++++++.......+||+|++..++
T Consensus 153 ~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~---- 228 (432)
T PRK10406 153 AVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA---- 228 (432)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh----
Confidence 99999999999999888888888887755544321 136899999998888777665555678876421000
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHH-hcC
Q 010323 239 QRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFR-TIK 317 (513)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g 317 (513)
++++.++++++++ ++.+.......+.....++....|.|.+++ +.|
T Consensus 229 ------------------------------~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g 275 (432)
T PRK10406 229 ------------------------------LKEAGSLKGLWRN---RRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAG 275 (432)
T ss_pred ------------------------------hcccccHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0011234555432 222222222222223445667778888875 478
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHH
Q 010323 318 LSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICV 397 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (513)
.+..+.+ .......+...++..+.|+++||++||+.+.....+..+....+..... ..++.........+
T Consensus 276 ~s~~~~~-~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 345 (432)
T PRK10406 276 MHANVAS-GIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ---------NVSSPYAAFGLVMC 345 (432)
T ss_pred CCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH---------cCCcHHHHHHHHHH
Confidence 8877776 5666666777888889999999999999877665544333322221110 01122222222221
Q ss_pred HHHhhhccccccccceecccCChhhhhhHhHHHHHHHHH-HHHHHHHHhHHHHHhcc-hhhhHHHHHHHHHHHHHHHhhc
Q 010323 398 YVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFL-FTFLIAQTFLAMLCHFK-AGIFFFFGGWVVVMTTFVHFFL 475 (513)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 475 (513)
...+.+.. .+....+.+|.+|++.|+++.|+.+..++. .+...|.+.+ +.+..+ +...+.+.++..+++.+..+++
T Consensus 346 ~~~~~~~~-~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 346 ALLIVSFY-TSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHHHHHHH-HHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 21222221 223355668999999999999999988775 3445666666 445555 4334444444444444444443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=296.99 Aligned_cols=388 Identities=13% Similarity=0.101 Sum_probs=270.6
Q ss_pred HHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhHH
Q 010323 23 VVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASS 102 (513)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~ 102 (513)
+|....+++++++.+++|...++.+ .|.+++|+|++.++.|++.+++.+++.+++++.|+
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~--------------------~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~ 65 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFA--------------------GLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNI 65 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHH--------------------HHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4445566677788999999988776 56678899999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHH
Q 010323 103 VTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAI 182 (513)
Q Consensus 103 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 182 (513)
++||+|||+++..++++++++++++++++|++.+++.|+++|++.+...+. ...++.|++|+++|+++++++..+.++
T Consensus 66 l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~--~~~~~~~~~~~~~rg~~~~~~~~~~~~ 143 (412)
T TIGR02332 66 MLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPG--ILLYLTFWFPAYFRARANALFMIAMPV 143 (412)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888 888899999999999999999999999
Q ss_pred HHHHHHHHHhhhccc---CCccchHHHHHhhHHHHHHHHH-hhcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHH
Q 010323 183 GILAASLINYGTQKI---KGGWGWRISLAMAAAPALILTL-GALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEF 258 (513)
Q Consensus 183 G~~~~~~l~~~~~~~---~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (513)
|..+++.+++.+... .+..|||+.|++.++++++..+ ..+++||+|+.. +.-+.++.+...++.+..+...++.
T Consensus 144 g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~~~~~ 221 (412)
T TIGR02332 144 TMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLTLEQP 221 (412)
T ss_pred HHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhcccccccc
Confidence 999999998876532 2336899999998888776554 445689988421 0000111111111111110000000
Q ss_pred HHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhc--CCCchhHHHHHHHHHHHHHH
Q 010323 259 DDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTI--KLSESTSLLMSAVVTGGIGT 336 (513)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~ 336 (513)
+ +..++.+...++.++.... +.++...+.+++....++.+..|.|.++++. +.+..+++ .......++.+
T Consensus 222 ~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~-~~~~~~~l~~~ 293 (412)
T TIGR02332 222 E------GAFAHAAMPQRSMLREIFT-PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIG-LLAAIPQFCTI 293 (412)
T ss_pred c------cccccccccHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhH-HHhhHHHHHHH
Confidence 0 0000000011111111122 3344555555666666777888999999875 45666666 77888889999
Q ss_pred HHHHHHHHhhhccCcchHH-HHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceec
Q 010323 337 LSTIISMILVDKLGRKVLF-LVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPS 415 (513)
Q Consensus 337 ~~~~~~g~l~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (513)
++.++.|+++||+++|+.. ........++. .+... . .+.........+...+.... .+.......
T Consensus 294 ~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~-----------~-~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~ 359 (412)
T TIGR02332 294 FGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASA-----------T-DHNLIQLLGIIMASMGSFSA-MAIFWTTPD 359 (412)
T ss_pred HHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh-----------c-CCHHHHHHHHHHHHHHhhhh-hhHHHhhcc
Confidence 9999999999999977753 33333333222 22211 1 11122222222222222111 233344446
Q ss_pred ccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc-hhh
Q 010323 416 EIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK-AGI 456 (513)
Q Consensus 416 ~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 456 (513)
|.+|++.|+++.|+.+..+++|++++|.+.+.+.|..+ +..
T Consensus 360 ~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~ 401 (412)
T TIGR02332 360 QSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNS 401 (412)
T ss_pred cccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCch
Confidence 78999999999999999999999999999999999876 443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=296.13 Aligned_cols=384 Identities=18% Similarity=0.148 Sum_probs=281.5
Q ss_pred cchHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHH
Q 010323 18 KITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIAS 97 (513)
Q Consensus 18 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~ 97 (513)
+..+++|....++.+..+.+++|....+.. .|.+.+++|+++.+.+++.+.+.++..+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~ 67 (406)
T PRK11551 8 ASSSRLALTIGLCFLVALLEGLDLQSAGVA--------------------APRMAQEFGLDVAQMGWAFSAGILGLLPGA 67 (406)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 344577878888888889999999887766 455567778999999999999999999999
Q ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHH
Q 010323 98 LFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYE 177 (513)
Q Consensus 98 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 177 (513)
++.|+++||+|||+++..+.++..++.+++.++++++.+++.|++.|++.+...+. ..+++.|++|+++|++++++..
T Consensus 68 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~--~~~~~~~~~~~~~r~~~~~~~~ 145 (406)
T PRK11551 68 LLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPN--LIALTSEAVGPRLRGTAVSLMY 145 (406)
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888 8899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHH-hhcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHH
Q 010323 178 LCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTL-GALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEA 256 (513)
Q Consensus 178 ~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (513)
.+..+|..+++.++..+.+. .+||+.|++.++..++..+ ...++||+|++...+++ .++.
T Consensus 146 ~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~--------------- 206 (406)
T PRK11551 146 CGVPFGGALASVIGVLAAGD---AAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA-GKQR--------------- 206 (406)
T ss_pred HHHHHHHHHHHHHHHHHccc---cCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc-chhh---------------
Confidence 99999999999987765543 5799999988776655544 34558988754322111 0000
Q ss_pred HHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 010323 257 EFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGT 336 (513)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 336 (513)
+...+..++....++. .......+......+....|.|.++++.|.+..+.+ .......++.+
T Consensus 207 ---------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~ 269 (406)
T PRK11551 207 ---------------APVLRALFGEGRATAT-LLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAG-LVQIAFNIGGA 269 (406)
T ss_pred ---------------hhhHHHHhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhh-HHHHHHHHHHH
Confidence 0000111111111111 112222222233345566788899988899888887 77788889999
Q ss_pred HHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecc
Q 010323 337 LSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSE 416 (513)
Q Consensus 337 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (513)
++.++.|++.||+++|+.+..+.....++...+... ++.+......++.+++.... .+....+..|
T Consensus 270 ~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~ 335 (406)
T PRK11551 270 LGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA-------------PSFAGMLLAGFAAGLFVVGG-QSVLYALAPL 335 (406)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-------------CcHHHHHHHHHHHHHHHHhH-HHHHHHHHHH
Confidence 999999999999999998877665555554443322 23333334444444443333 3444556689
Q ss_pred cCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc-hhhhHHHHHHHHHHHHHHHh
Q 010323 417 IFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK-AGIFFFFGGWVVVMTTFVHF 473 (513)
Q Consensus 417 ~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 473 (513)
.+|++.|+++.|+.+....++.+++|.+.|.+.++.+ +...+.....+.+.+.+..+
T Consensus 336 ~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 336 FYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998765 33333334434444444433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=295.01 Aligned_cols=374 Identities=17% Similarity=0.154 Sum_probs=265.5
Q ss_pred HHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHh
Q 010323 21 SFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFA 100 (513)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~ 100 (513)
+.++.....+.++.+.+++|....++. .|.+++++|+|+.+.+++.+++.+++.+++++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~ 73 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYI--------------------MYLIKADLGLTDMEGAFLATAAFIGRPFGGALF 73 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH--------------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444566678888889988776554 345577789999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHH
Q 010323 101 SSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCT 180 (513)
Q Consensus 101 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 180 (513)
|+++||+|||+++.++.++.+++.++++++++++.++++|+++|++.+...+. ...++.|++|+++|+++.++...+.
T Consensus 74 g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~--~~~~~~~~~~~~~r~~~~~~~~~~~ 151 (426)
T PRK12307 74 GLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYAC--ASTYAVESWPKHLKSKASAFLVSGF 151 (426)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHhCCHhHhhHhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888 8889999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHH
Q 010323 181 AIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDD 260 (513)
Q Consensus 181 ~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (513)
.+|.++++.+...+.+. .+||+.|++..+..++........||++++..++.+ ..++..
T Consensus 152 ~lg~~~~~~l~~~l~~~---~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~-------------~~~~~~----- 210 (426)
T PRK12307 152 GIGNIIAAYFMPSFAEA---YGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS-------------GKGKHS----- 210 (426)
T ss_pred hHHHHHHHHHHHHHccc---CCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh-------------cccccc-----
Confidence 99999999887665443 579999988655444333333335666543221100 000000
Q ss_pred HHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Q 010323 261 LIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTI 340 (513)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 340 (513)
....+..+.++++.++++..+...... ...+...........+.|.++++.|.+....+ .......++.+++++
T Consensus 211 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~g~~ 284 (426)
T PRK12307 211 ----QSAWSVFSLSMKGLFNRAQFPLTLCVF-IVLFSIFGANWPIFGLLPTYLAGEGFDTGVVS-NLMTAAAFGTVLGNI 284 (426)
T ss_pred ----ccchhhhhHHHHHHHhhchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHH
Confidence 000000011234444433222222222 22222223333456678888888888887777 777788889999999
Q ss_pred HHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhh-hccccccccceecccCC
Q 010323 341 ISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGF-AVSWGPLGFLVPSEIFP 419 (513)
Q Consensus 341 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p 419 (513)
+.+++.||++||+.+..+..+..+..+.+... +.+... ....++++.+. ..+..+....++.|.+|
T Consensus 285 ~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 351 (426)
T PRK12307 285 VWGLCADRIGLKKTFSIGLLMSFLFIFPLFRI-----------PQDNYL--LLGACLFGLMATNVGVGGLVPKFLYDYFP 351 (426)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-----------ccccHH--HHHHHHHHHHHhcccHhHHHHHHHHHhCc
Confidence 99999999999998887776665544433322 111111 12222222222 11222333455679999
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhh
Q 010323 420 LEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGI 456 (513)
Q Consensus 420 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (513)
++.|+++.|+.+....+++.++|.+.+.+.+..+...
T Consensus 352 ~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~ 388 (426)
T PRK12307 352 LEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGA 388 (426)
T ss_pred HHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence 9999999999999999999999999999999888543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=302.96 Aligned_cols=403 Identities=10% Similarity=-0.034 Sum_probs=274.5
Q ss_pred chHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHH
Q 010323 19 ITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASL 98 (513)
Q Consensus 19 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~ 98 (513)
..+..+.+..++.+++++.+.|...++.+ .|.+.+|+|++.++.|++.+++.+++.++++
T Consensus 23 ~~~~~~~i~~~~~~~~~~~y~~r~~~~~~--------------------~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~ 82 (467)
T PRK09556 23 WFKPFMQSYLVVFIGYLTMYLIRKNFKAA--------------------QNDMISTYGLSTTELGMIGLGFSITYGVGKT 82 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhh--------------------hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 34445667777888888888899888876 4566788899999999999999999999999
Q ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHHHHhhh-----chhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchh
Q 010323 99 FASSVTRAFGRRASILVGGAAFLAGSALGGA-----ALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFN 173 (513)
Q Consensus 99 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~ 173 (513)
+.|+++||+|||+++.++.++++++.+..++ +++++.+++.|+++|++.+...+. ..++++||+|+++|++++
T Consensus 83 ~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~--~~~~i~~~~~~~~rg~a~ 160 (467)
T PRK09556 83 LVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPC--SYSTITRWTPRRKRGRFL 160 (467)
T ss_pred hhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchH--HHHHHHHHcCccceeeeE
Confidence 9999999999999999888888777766654 689999999999999999999988 889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhc-ccCCChHHHHHhCCcHHHHHHHHHHHhCCC
Q 010323 174 IGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGAL-FLPETPNSIIQRSNDLQRAKQMLQRIRGTD 252 (513)
Q Consensus 174 ~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~ 252 (513)
+++..+.++|.++++.++..+.......+||..|.+.++++++..+..+ +.+++|+....++ .++ . ... .
T Consensus 161 gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~--~~~---~---~~~-~ 231 (467)
T PRK09556 161 GFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGK--AEE---I---FGE-P 231 (467)
T ss_pred EeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCC--hhh---c---ccC-c
Confidence 9999999999999998876544321112699999888887776554444 4677764211000 000 0 000 0
Q ss_pred chHHHHHHHHHHHHhhhhcCCcchhhc-ccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHH-hcCCCchhHHHHHHHH
Q 010323 253 DVEAEFDDLIKASSIAKTVNHPFKKII-QRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFR-TIKLSESTSLLMSAVV 330 (513)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~ 330 (513)
...+ .+..++.+.+.++.+ +...+++.++...+..++....+.....|.|.|++ +.|++..+++ .....
T Consensus 232 -~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~-~~~~~ 302 (467)
T PRK09556 232 -ISEE-------DKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAI-NTFTL 302 (467)
T ss_pred -cchh-------hhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHH-HHHHH
Confidence 0000 000000011111211 11223344555555555555556667889998875 5889988887 77777
Q ss_pred HHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccc
Q 010323 331 TGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLG 410 (513)
Q Consensus 331 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (513)
..++.+++.++.|+++||++||+..........++...+... ...+.+...+..++.+.+.. +.....
T Consensus 303 ~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~G~~~~-~~~~~~ 370 (467)
T PRK09556 303 FEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ-----------HATSEYMYLASLFALGFLVF-GPQLLI 370 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH-----------hcCcHHHHHHHHHHHHHHHh-hHHHHH
Confidence 888999999999999999999887665544433332222211 11223333333333332221 111111
Q ss_pred cceecccCChhhhhhHhHHHHHHHHH-HHHHHHHHhHHHHH------------hcchhhhHHHHHHHHHHHHHHHh
Q 010323 411 FLVPSEIFPLEIRSAGQSINVAVGFL-FTFLIAQTFLAMLC------------HFKAGIFFFFGGWVVVMTTFVHF 473 (513)
Q Consensus 411 ~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 473 (513)
.....|.+|++.+|++.|+.+..+++ |++++|.+.|.+.| ..++...+.+..++.+++.+..+
T Consensus 371 ~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 371 GVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 23446999999999999999999997 67999999999999 44554444444444444444433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=288.13 Aligned_cols=391 Identities=15% Similarity=0.210 Sum_probs=260.5
Q ss_pred HHHHHHHHHhhhhhhcccccccccccchh-HHhhhhhhhhhccccccccccccccchhHHHHHH-----HHHHHHHHHHH
Q 010323 24 VLSCIVAATGGLIFGYDLGISGGVTSMEP-FLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFT-----SSLYIAGLIAS 97 (513)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~-----s~~~l~~~i~~ 97 (513)
+.......++.++++||...++.+ .+. ..++++|. .++. .+++. ++.+++..+++
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~~----------------~~~~-~~~~~~~~~~~~~~~~~~~g~ 81 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGIT--AALVFNREFFPQ----------------VSPA-MGTLAAFATFGVGFLFRPLGG 81 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCC----------------CCcH-HHHHHHHHHHHHHHHHHhhHH
Confidence 345666678899999999987755 121 22333322 2333 23332 45567788999
Q ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHH--------HHHHHHHHHHhhhhhhhhcccccceeeccCCCCCc
Q 010323 98 LFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIY--------MLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHR 169 (513)
Q Consensus 98 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r 169 (513)
++.|+++||+|||+++..+.++++++++++++++++. .+++.|+++|++.|..++. ...++.|++|+++|
T Consensus 82 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~--~~~~~~e~~p~~~r 159 (438)
T PRK09952 82 VVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGG--AALLAVESAPKNKK 159 (438)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHH--HHHHHHHhCCCCCC
Confidence 9999999999999999999999999999999999987 5888999999999999998 88999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhhcccC-----CccchHHHHHhhHHHHHHHHHhhcccCCChHHHHHhCCcHHHHHHH
Q 010323 170 GAFNIGYELCTAIGILAASLINYGTQKIK-----GGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQM 244 (513)
Q Consensus 170 ~~~~~~~~~~~~~G~~~~~~l~~~~~~~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~ 244 (513)
++..+....+..+|..++..+...+.... ..+|||+.|++.+++.++........||+|++...+++ .+
T Consensus 160 g~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~-~~----- 233 (438)
T PRK09952 160 AFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHE-QA----- 233 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhh-cc-----
Confidence 99999999999999999887765544321 23689999999888766655555568888865332211 00
Q ss_pred HHHHhCCCchHHHHHHHHHHHHhhhhcCCcchh-hcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHH-hcCCCchh
Q 010323 245 LQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKK-IIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFR-TIKLSEST 322 (513)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~ 322 (513)
+.+++.+..+ .+++ ++.+.......++.....+....|.|.+++ ..|.+...
T Consensus 234 -----------------------~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~ 287 (438)
T PRK09952 234 -----------------------AAKKRIPVIEALLRH---PGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPREL 287 (438)
T ss_pred -----------------------cccccCCHHHHHHHc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 0000111111 2111 122222222233333344556667777764 46777665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhh
Q 010323 323 SLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGF 402 (513)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (513)
.. ......++..+++.++.|+++||++||+.+..+.++..++...+..... ..+..+......++.+++.
T Consensus 288 ~~-~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~ 357 (438)
T PRK09952 288 FL-NIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE---------AQSIFWIVFFSIMLANIAH 357 (438)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHHHH
Confidence 44 4445566777888899999999999999888776655444333222110 1122233333333334444
Q ss_pred hccccccccceecccCChhhhhhHhHHHHHHHH-HHHHHHHHHhHHHHHhcc--hhhhHHHHHHHHHHHHHHHhhcccC
Q 010323 403 AVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGF-LFTFLIAQTFLAMLCHFK--AGIFFFFGGWVVVMTTFVHFFLPET 478 (513)
Q Consensus 403 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (513)
+... +..+.+..|.+|++.|+++.|+.+..+. +++.++|.+.+.+.+..+ +.....+.+++.+++.+..+.++++
T Consensus 358 ~~~~-~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 358 DMVV-CVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHH-HHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 4333 3335666899999999999999776654 889999999999988553 4444455555555555555666553
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=295.00 Aligned_cols=401 Identities=13% Similarity=0.060 Sum_probs=270.3
Q ss_pred chHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHH
Q 010323 19 ITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASL 98 (513)
Q Consensus 19 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~ 98 (513)
.++.++.......++.+..+++...++.. .|.+.+++|+|.++.+++.+.+.+++.++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~ 76 (434)
T PRK11663 17 YRYWRRHILITMYLGYALFYFTRKSFNAA--------------------MPEMLADLGLSRSDIGLLATLFYITYGVSKF 76 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHh--------------------hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 34445555566677777777777666554 3455677899999999999999999999999
Q ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHH
Q 010323 99 FASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYEL 178 (513)
Q Consensus 99 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 178 (513)
+.|+++||+|||+++.++.++.+++.++++++++++.+++.|++.|++.|...+. ..+++.|++|+++|++++++.+.
T Consensus 77 ~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~--~~~~~~~~~~~~~rg~~~~~~~~ 154 (434)
T PRK11663 77 VSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPV--CAKLLTAWYSRTERGGWWAIWNT 154 (434)
T ss_pred hhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchH--HHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988888 88899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHH-HhhcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHH
Q 010323 179 CTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILT-LGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAE 257 (513)
Q Consensus 179 ~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (513)
+.++|..+++.+++.+.+. ++||+.|++.+++.++.. +..+++||+|++...+.. .+...+ .
T Consensus 155 ~~~~g~~~~~~~~~~l~~~---~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~--------~----- 217 (434)
T PRK11663 155 AHNVGGALIPLVVGAIALH---YGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSV-GEWRHD--------A----- 217 (434)
T ss_pred HHHHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCc-cccccc--------c-----
Confidence 9999999999988777543 589999999888766544 344557888753211100 000000 0
Q ss_pred HHHHHHHHHhhhhcCCcchhhcc-cCchhHHHHHHHHHHHhhhcchhhhHhcHHHHH-HhcCCCchhHHHHHHHHHHHHH
Q 010323 258 FDDLIKASSIAKTVNHPFKKIIQ-RKYRPQLVMAILIPFFLQVTGINVIGFYAPVLF-RTIKLSESTSLLMSAVVTGGIG 335 (513)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~ 335 (513)
++ ..++.++.+.+.++.++ ...+++.++...+..+........+..|.|.++ ++.|++..+++ .......++.
T Consensus 218 -~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~-~~~~~~~~~~ 292 (434)
T PRK11663 218 -LE---LAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTAN-SAVSMFELGG 292 (434)
T ss_pred -cc---cchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHH-HHHHHHHHHH
Confidence 00 00000001112223221 112233344444444444445556677888888 45789888887 7778888999
Q ss_pred HHHHHHHHHhhhcc--CcchHH-HHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccc
Q 010323 336 TLSTIISMILVDKL--GRKVLF-LVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFL 412 (513)
Q Consensus 336 ~~~~~~~g~l~d~~--g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (513)
++++++.|++.||+ ++|+.. ........+....+... +..+...........+++. .........
T Consensus 293 ~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~-~~~~~~~~~ 360 (434)
T PRK11663 293 FIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM-----------PFASYVMQAACFFTIGFFV-FGPQMLIGM 360 (434)
T ss_pred HHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc-----------ccccHHHHHHHHHHHHHHH-hhHHHHHHH
Confidence 99999999999998 333332 22222222222221111 1112222222222222211 111112233
Q ss_pred eecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHHHH-HHHHHHHhhc
Q 010323 413 VPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVV-VMTTFVHFFL 475 (513)
Q Consensus 413 ~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 475 (513)
...|.+|++.|+++.|+.+...++|++++|.+.|.+.|+.++...+...+++. +.++..+...
T Consensus 361 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 424 (434)
T PRK11663 361 AAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFL 424 (434)
T ss_pred HHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999888655444444443 4343333333
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=286.31 Aligned_cols=388 Identities=17% Similarity=0.145 Sum_probs=273.5
Q ss_pred chHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHH
Q 010323 19 ITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASL 98 (513)
Q Consensus 19 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~ 98 (513)
.++++|.....+.++.+.++++....+.+ .|.+++++|++..+.+++.+.+.++..++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~ 65 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALV--------------------LAEVAGEFGLTTVDAASLISAALISRWFGAL 65 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHhCCChhhHHHHHHHHHHHHHHHHH
Confidence 45677777778889999999999887766 3455777889999999999999999999999
Q ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHH
Q 010323 99 FASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYEL 178 (513)
Q Consensus 99 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 178 (513)
+.|+++||+|||+++.++.++.++++++++++++++.+++.|++.|++.+...+. ..+++.|++|+++|+++.++...
T Consensus 66 ~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~ 143 (405)
T TIGR00891 66 MFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGS--SAAYVIESWPKHLRNKASGLLIS 143 (405)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHH--HHHHHHHhCChhhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988 88999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHH
Q 010323 179 CTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEF 258 (513)
Q Consensus 179 ~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (513)
+..+|..+++.+++.+.+..+ .+||+.|++.+++.++..+....+||++++...+++ .++.++..++..+.+....
T Consensus 144 ~~~~g~~~~~~l~~~l~~~~~-~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-- 219 (405)
T TIGR00891 144 GYAVGAVVAAQVYSLVVPVWG-DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAG-KALVRTMVDILYGGEHRIA-- 219 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhh-hhhhhhHHHHHhccchhhh--
Confidence 999999999999887765432 359999998777666665556668888754332221 1111111111111000000
Q ss_pred HHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHH-HhcCCCchhHHHHHHHHHHHHHHH
Q 010323 259 DDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLF-RTIKLSESTSLLMSAVVTGGIGTL 337 (513)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~ 337 (513)
...++...+.++. ...+++.+...................+.|.++ ++.|.+..+.+ .......++.++
T Consensus 220 -------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~-~~~~~~~~~~~~ 289 (405)
T TIGR00891 220 -------NIVMTLAAAMVQS--AGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVA-NIVVFSNIGAIV 289 (405)
T ss_pred -------hhhhhhhHHhhhh--hhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHH-HHHHHHHHHHHH
Confidence 0000000001111 011111122222222222222233445566665 45788888887 777888899999
Q ss_pred HHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceeccc
Q 010323 338 STIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEI 417 (513)
Q Consensus 338 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (513)
+.++.+++.||++||+.+..+.....+....+... ..+.+......++.+.+..... +....+..|.
T Consensus 290 g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 356 (405)
T TIGR00891 290 GGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI------------GANVAVLGLGLFFQQMLVQGIW-GILPKHLGEY 356 (405)
T ss_pred HHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh------------CCchHHHHHHHHHHHHHHccch-hhHHHHHhhh
Confidence 99999999999999998877766543332222211 1233333333334443333333 3334556899
Q ss_pred CChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc-hh
Q 010323 418 FPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK-AG 455 (513)
Q Consensus 418 ~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 455 (513)
+|++.|+++.|+.+....+++.++|.+.|.+.|+.+ +.
T Consensus 357 ~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~ 395 (405)
T TIGR00891 357 FPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYG 395 (405)
T ss_pred CCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999988 44
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=283.22 Aligned_cols=344 Identities=14% Similarity=0.118 Sum_probs=247.7
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhh
Q 010323 68 DTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGI 147 (513)
Q Consensus 68 ~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~ 147 (513)
.|.+.+++|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++++++++|++.+++.|+++|++.
T Consensus 32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~ 111 (390)
T PRK03545 32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAH 111 (390)
T ss_pred hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 35667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhh-cccCC
Q 010323 148 GFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGA-LFLPE 226 (513)
Q Consensus 148 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e 226 (513)
+...+. ..+++.|++|+++|++++++...+.++|..++|.+++.+.+. .|||+.|++.++++++..+.. .++||
T Consensus 112 ~~~~~~--~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~~~~l~~~~~~~~~~~ 186 (390)
T PRK03545 112 AIFWSI--TASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY---LGWRTTFLAIGGGALITLLLLIKLLPL 186 (390)
T ss_pred HHHHHH--HHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH---hcHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 988888 888999999999999999999999999999999998876543 589999999988777665443 34666
Q ss_pred ChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhH
Q 010323 227 TPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIG 306 (513)
Q Consensus 227 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (513)
.|+ +++ ++ .++.++.++++. .........+.. .......
T Consensus 187 ~~~----~~~--~~-------------------------------~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~ 225 (390)
T PRK03545 187 LPS----EHS--GS-------------------------------LKSLPLLFRRPA---LVSLYLLTVVVV-TAHFTAY 225 (390)
T ss_pred CCC----CCc--ch-------------------------------HHHHHHHHhCcH---HHHHHHHHHHHH-HHHHHHH
Confidence 542 000 00 001122332221 111122222212 2222233
Q ss_pred hcHHHHHH-hcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 010323 307 FYAPVLFR-TIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSK 385 (513)
Q Consensus 307 ~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (513)
.+.+.+.+ +.|.+..+.+ .......++.++++++.+++.||+++|+.. .+..+..++...+... .
T Consensus 226 ~~~~~~l~~~~g~s~~~~~-~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~------------~ 291 (390)
T PRK03545 226 SYIEPFVQQVAGLSENFAT-LLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPA------------A 291 (390)
T ss_pred HHHHHHHHHhcCCCccHHH-HHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHH------------h
Confidence 44444444 4788888777 777788889999999999999999987654 3433333333332221 1
Q ss_pred chhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHHHH
Q 010323 386 GNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVV 465 (513)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (513)
++.+.......+.+.+.... .+.......+..| +.|+++.|+.+...++|..++|.+.|.+.++.+....+...+...
T Consensus 292 ~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~ 369 (390)
T PRK03545 292 NSEWHLSVLSIFWGIAIMCI-GLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALA 369 (390)
T ss_pred chHHHHHHHHHHHHHHHhcc-hHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence 33444445555555554332 2333444457766 688999999999999999999999999999998765555555444
Q ss_pred HHHHHHHh
Q 010323 466 VMTTFVHF 473 (513)
Q Consensus 466 ~~~~~~~~ 473 (513)
+.+.+...
T Consensus 370 ~~~~~~~~ 377 (390)
T PRK03545 370 LAALVWSI 377 (390)
T ss_pred HHHHHHHH
Confidence 44444433
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=277.76 Aligned_cols=447 Identities=22% Similarity=0.260 Sum_probs=320.1
Q ss_pred cchHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHH
Q 010323 18 KITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIAS 97 (513)
Q Consensus 18 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~ 97 (513)
..+|+......++.+|.|.|+||...++.+. +...+.+..-.+. .=|.++...+.+..+..+|..+|+
T Consensus 34 g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt---~il~~lY~~~~~~---------~g~~ps~i~~~Vn~~A~vGti~GQ 101 (538)
T KOG0252|consen 34 GLQWKHFKAIIIAGMGFFTDSYDLFSISLVT---KILGYLYYHGDES---------GGHYPSGVLALVNAAALVGTIFGQ 101 (538)
T ss_pred chhHHHHHHHHHhhhhhcccchhhhhHHHHH---HHHHHHhcCCCCC---------CCcCCchHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999998774 3333333222111 123577888999999999999999
Q ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchh-------HHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCcc
Q 010323 98 LFASSVTRAFGRRASILVGGAAFLAGSALGGAALN-------IYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRG 170 (513)
Q Consensus 98 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-------~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~ 170 (513)
+++|+++||+|||+++...+++..+++++++++.. .+++...|++.|+|.|+-+|. ..+..+|...+++||
T Consensus 102 l~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPl--SAtI~SE~an~~~RG 179 (538)
T KOG0252|consen 102 LFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPL--SATIMSESANKKTRG 179 (538)
T ss_pred HHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcc--hHHHhhhhhhhcccc
Confidence 99999999999999999999999999998888632 578889999999999999999 999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhc----ccCCc--------cchHHHHHhhHHHHHHHHHhhcccCCChHHHHHhCCcH
Q 010323 171 AFNIGYELCTAIGILAASLINYGTQ----KIKGG--------WGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDL 238 (513)
Q Consensus 171 ~~~~~~~~~~~~G~~~~~~l~~~~~----~~~~~--------~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~ 238 (513)
...+...+..+.|.+.|.+++..+. ...+. .-||..+.+..++++..+...+.+||++++....++|.
T Consensus 180 a~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~ 259 (538)
T KOG0252|consen 180 AFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKL 259 (538)
T ss_pred ceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCH
Confidence 8888777777777666666554433 22111 24999999999999988888888999999876665655
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCc--hhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhc
Q 010323 239 QRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKY--RPQLVMAILIPFFLQVTGINVIGFYAPVLFRTI 316 (513)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (513)
+.+.+..++....+ .+.++ ......+.+++..+...+... .-+.++.....++..-..++....+...+++..
T Consensus 260 ~~a~~d~~k~~~~~---~~~~~--~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~i 334 (538)
T KOG0252|consen 260 KQAAGDMKKVLSVD---IEAES--TAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAI 334 (538)
T ss_pred hhhhhccccccccc---cchhh--ccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhh
Confidence 55553333222211 00000 001111111222221222111 224556666677777777888888888999988
Q ss_pred CCCchhHHH--------HHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchh
Q 010323 317 KLSESTSLL--------MSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNA 388 (513)
Q Consensus 317 g~~~~~~~~--------~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (513)
|..+..... ....+.....++|..+...++|++|||+..+.++.++.+..+.+...... ..+.
T Consensus 335 g~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~---------~~~~ 405 (538)
T KOG0252|consen 335 GVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ---------LENT 405 (538)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc---------cccc
Confidence 876655441 12223334444577778889999999999999999999988887764310 1123
Q ss_pred HHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHH-----hcchhhhHHHHHH
Q 010323 389 YLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLC-----HFKAGIFFFFGGW 463 (513)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 463 (513)
...++...+..+....+.+.....+.+|.+|++.|++..|+....+..|+.++...+.++.+ ..+....++..+.
T Consensus 406 ~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~ 485 (538)
T KOG0252|consen 406 IGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAG 485 (538)
T ss_pred CceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHH
Confidence 33444555555556666667778889999999999999999999999999999999999998 4454444444445
Q ss_pred HHHHHHHHHhhcccCCCCCHHHHHHHhcc
Q 010323 464 VVVMTTFVHFFLPETKNVPIEQMDEVWGE 492 (513)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (513)
+.+.+.+..+++||+++++++|++++.+.
T Consensus 486 ~~~~gi~~T~l~pEtk~~~leei~~e~~~ 514 (538)
T KOG0252|consen 486 CMLLGILFTLLIPETKGKSLEEISNEEES 514 (538)
T ss_pred HHHHhHheeEEeecccccCHHHhcChhhc
Confidence 55556666677889999999988654443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=283.09 Aligned_cols=360 Identities=18% Similarity=0.257 Sum_probs=242.2
Q ss_pred HHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHH-HHH-----HHHHHHHHHH
Q 010323 26 SCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFT-SSL-----YIAGLIASLF 99 (513)
Q Consensus 26 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~-s~~-----~l~~~i~~~~ 99 (513)
....++++.+++++|...++.. .|.+.+|++.++.+.+.+. +.. .++..+++++
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~--------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~ 75 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFY--------------------ATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIV 75 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4666678999999999998876 4455666676776655433 222 2333578999
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHH--------HHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccc
Q 010323 100 ASSVTRAFGRRASILVGGAAFLAGSALGGAALNIY--------MLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGA 171 (513)
Q Consensus 100 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~ 171 (513)
.|+++||+|||++++.+.+++.+++++++++++++ .+++.|+++|++.+...+. ...+++|++|+++|++
T Consensus 76 ~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~--~~~~~~e~~p~~~rg~ 153 (434)
T PRK15075 76 LGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGG--VSVYLAEIATPGRKGF 153 (434)
T ss_pred HHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHH--HHHHHHhhCCcccchH
Confidence 99999999999999999999999999999999987 4688999999999998888 8889999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhccc-----CCccchHHHHHhhHHHHHHHHHhhcccCCChHHHHHhCCcHHHHHHHHH
Q 010323 172 FNIGYELCTAIGILAASLINYGTQKI-----KGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQ 246 (513)
Q Consensus 172 ~~~~~~~~~~~G~~~~~~l~~~~~~~-----~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~ 246 (513)
++++...+..+|..+++.++..+... .+.+|||+.|++..+...+........||++++...++
T Consensus 154 ~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~----------- 222 (434)
T PRK15075 154 YTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH----------- 222 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh-----------
Confidence 99999998888888888777765422 12468999998765443322222223445432110000
Q ss_pred HHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccC-chhHHHHHHHHHHHhhhcchhhhHhcHHHHHHh-cCCCchhHH
Q 010323 247 RIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRK-YRPQLVMAILIPFFLQVTGINVIGFYAPVLFRT-IKLSESTSL 324 (513)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~ 324 (513)
+.+.++.++.. ..++.+.......+.....++....|.|.++++ .|++..+..
T Consensus 223 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~ 277 (434)
T PRK15075 223 -------------------------RPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSL 277 (434)
T ss_pred -------------------------ccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 00011111111 111222222233333444566778889998876 788888776
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhc
Q 010323 325 LMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAV 404 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (513)
.......++.+++.++.|+++||++||+.+..+..+..+......... . ...+.........+.+++.+.
T Consensus 278 -~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~g~ 347 (434)
T PRK15075 278 -LVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWL-V--------AAPSFARMLAVELWLSFLYGS 347 (434)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-H--------cCCchHHHHHHHHHHHHHHHH
Confidence 777778888999999999999999999987766544332221111111 0 111221222222223333333
Q ss_pred cccccccceecccCChhhhhhHhHHHHHHHHH-HHHHHHHHhHHHHHhcch
Q 010323 405 SWGPLGFLVPSEIFPLEIRSAGQSINVAVGFL-FTFLIAQTFLAMLCHFKA 454 (513)
Q Consensus 405 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 454 (513)
. .+....+..|.+|++.|+++.|+.+..+.. ++.++|.+.+.+.|+.++
T Consensus 348 ~-~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 348 Y-NGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred H-HhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 2 233345568999999999999997666654 588899999999998874
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=275.58 Aligned_cols=353 Identities=14% Similarity=0.059 Sum_probs=254.9
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhh
Q 010323 68 DTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGI 147 (513)
Q Consensus 68 ~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~ 147 (513)
.|.+++|+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+.+++++|++.+++.|+++|++.
T Consensus 32 lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~ 111 (393)
T PRK09705 32 LPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGI 111 (393)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHH
Confidence 46678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhccc-CC
Q 010323 148 GFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFL-PE 226 (513)
Q Consensus 148 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e 226 (513)
+...+. ...++.+++| ++|+++++.+..+..+|..+++.++..+.+.. .+||..+.+.++..++..+..+.. ++
T Consensus 112 ~~~~~~--~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~ 186 (393)
T PRK09705 112 GIIQAV--MPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS--ETWYQTLAWWALPAVVALFAWWWQSAR 186 (393)
T ss_pred HHHhhh--hhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999888 8889999997 88999999999999999999998887765432 279998877666554433333222 22
Q ss_pred ChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhH
Q 010323 227 TPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIG 306 (513)
Q Consensus 227 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (513)
.|+ ++ +++ +.+.++.++ +++ .+...+..++....+....
T Consensus 187 ~~~-----~~-------------------------------~~~-~~~~~~~l~---~~~-~~~l~~~~~~~~~~~~~~~ 225 (393)
T PRK09705 187 EVA-----SS-------------------------------HKT-TTTPVRVVF---TPR-AWTLGVYFGLINGGYASLI 225 (393)
T ss_pred CCc-----cc-------------------------------cCC-CcCCccccc---CHh-HHHHHHHHHHHHHHHHHHH
Confidence 220 00 000 001111111 222 2223333334444566777
Q ss_pred hcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 010323 307 FYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKG 386 (513)
Q Consensus 307 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (513)
.|.|.++++.|.+..+.+ .......++.++++++.+++.||++||+....+..+..++...+... + .
T Consensus 226 ~~lp~~l~~~g~s~~~ag-~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~-----------~-~ 292 (393)
T PRK09705 226 AWLPAFYIEIGASAQYSG-SLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL-----------P-L 292 (393)
T ss_pred HHHHHHHHHcCCChhhhh-HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc-----------c-c
Confidence 888888888899888887 77888899999999999999999999998888776666665544322 1 1
Q ss_pred hhHHHHHHHHHHHHhhhccccccccceecccC-ChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc-hhhhHHH-HHH
Q 010323 387 NAYLILVLICVYVAGFAVSWGPLGFLVPSEIF-PLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK-AGIFFFF-GGW 463 (513)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~ 463 (513)
+.... ...+.+.+.+...+.. .....+.. |++.+++..|+.+..+++++.++|.+.|++.|+.| +...+.. ...
T Consensus 293 ~~~~~--~~~l~g~g~g~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~ 369 (393)
T PRK09705 293 QLPVL--WAMVCGLGLGGAFPLC-LLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALC 369 (393)
T ss_pred hHHHH--HHHHHHHhccchHHHH-HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 11111 2233444444443332 32334555 56889999999999999999999999999999987 4443333 333
Q ss_pred HHHHHHHHHhhcccCCCCC
Q 010323 464 VVVMTTFVHFFLPETKNVP 482 (513)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~ 482 (513)
+.+...+...+.||++.+.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 370 VVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHHhccccccch
Confidence 3444444455666665543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=286.12 Aligned_cols=402 Identities=16% Similarity=0.159 Sum_probs=269.6
Q ss_pred CcchHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHH
Q 010323 17 GKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIA 96 (513)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~ 96 (513)
++.+++++.....+.++.+.+++|....++. .|.+.+++|++..+.+++.+.+.+++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~i~~~~~~s~~~~~~~~~~~~~~~~~~ 71 (496)
T PRK03893 12 RHLNRAQWKAFSAAWLGYLLDGFDFVLITLV--------------------LTEVQGEFGLTTVQAASLISAAFISRWFG 71 (496)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3344566666777788888999988776654 34456677899999999999999999999
Q ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHH
Q 010323 97 SLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGY 176 (513)
Q Consensus 97 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 176 (513)
+++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+. ...++.|++|+++|++++++.
T Consensus 72 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~--~~~~~~~~~~~~~r~~~~~~~ 149 (496)
T PRK03893 72 GLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGS--SATYVIESWPKHLRNKASGFL 149 (496)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988888 888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHH
Q 010323 177 ELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEA 256 (513)
Q Consensus 177 ~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (513)
..+..+|..+++.+++.+.+. .+||+.|++..+..++..+....+||++++...+++ .++.++..+.....+....
T Consensus 150 ~~~~~~g~~~~~~~~~~l~~~---~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 225 (496)
T PRK03893 150 ISGFSIGAVVAAQVYSLVVPV---WGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAG-KAPVRTMVDILYRGEHRII 225 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccc-cccchhHHHHHhcchhHHH
Confidence 999999999999998876553 689999987655544444444557887654332221 1111111111000000000
Q ss_pred HHH-HHHH----HHHhhhhcCCcch-------------hh-c-ccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHH-h
Q 010323 257 EFD-DLIK----ASSIAKTVNHPFK-------------KI-I-QRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFR-T 315 (513)
Q Consensus 257 ~~~-~~~~----~~~~~~~~~~~~~-------------~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 315 (513)
... .... ...........+. .. . ....+.+.........+...........+.|.+++ +
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~ 305 (496)
T PRK03893 226 NILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTD 305 (496)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 000 0000 0000000000000 00 0 00011112222222222222222335567888884 7
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHH
Q 010323 316 IKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLI 395 (513)
Q Consensus 316 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (513)
.|++..+.+ .......++.+++.++.|++.||++||+.+..+..+..+..+.+... ...+.+......
T Consensus 306 ~g~~~~~~g-~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 373 (496)
T PRK03893 306 LGYDPHTVA-NVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI-----------GGANVWVLGLLL 373 (496)
T ss_pred cCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc-----------cccHHHHHHHHH
Confidence 899988888 78888889999999999999999999998877665555444333221 112222222222
Q ss_pred HHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhh
Q 010323 396 CVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIF 457 (513)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (513)
.+.+. .+.+..+....++.|.+|++.|++++|+.+....+|+.++|.+.|.+.++.++...
T Consensus 374 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~ 434 (496)
T PRK03893 374 FFQQM-LGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTA 434 (496)
T ss_pred HHHHH-HhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHH
Confidence 22222 22222334445667999999999999999999999999999999999998886543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=251.50 Aligned_cols=419 Identities=18% Similarity=0.196 Sum_probs=309.6
Q ss_pred chHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHH
Q 010323 19 ITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASL 98 (513)
Q Consensus 19 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~ 98 (513)
..+.+|....++.++...+....-..+.+ .|.++..++.+..+..++....+.|..+++.
T Consensus 72 fgrfq~yl~~~ag~gwmad~m~~m~~s~i--------------------~~~l~~~w~~s~~q~~llt~~v~~gmllga~ 131 (528)
T KOG0253|consen 72 FGRFQWYLFFVAGMGWMADAMEMMLLSLI--------------------LPALDEVWGPSEGQAPLLTLSVFLGMLVGAM 131 (528)
T ss_pred cccchhhHHHHhhhHHHHHHHHHHHHHHH--------------------HHHHHhhhchhhhhhhHHHHHHHhhhhhhhh
Confidence 44566666666666655554433222222 3445666778899999999999999999999
Q ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHH
Q 010323 99 FASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYEL 178 (513)
Q Consensus 99 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 178 (513)
.+|..+|++|||+.+.+..+...+...+.+.++|+..+++.|.+.|+|.|+ .|. ..++-.|..|..+|...+-.. .
T Consensus 132 ~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv--~~~~yle~lp~~~r~~~~V~~-~ 207 (528)
T KOG0253|consen 132 VWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPV--DSAIYLEFLPSSHRWLLTVMS-F 207 (528)
T ss_pred hhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccH--hHHHHHHhccCcCCCcchhHH-H
Confidence 999999999999999999999999999999999999999999999999998 777 777888999999998877666 8
Q ss_pred HHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchH---
Q 010323 179 CTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVE--- 255 (513)
Q Consensus 179 ~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 255 (513)
.+.+|.+....++...... +||||.....+.+..+.+...+++||+||+...+++ .++|.+.++++.+.|..+
T Consensus 208 ~waig~v~ea~law~vm~~---~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~-~~kAletL~kiArmNg~qlpl 283 (528)
T KOG0253|consen 208 FWAIGQVFEALLAWGVMSN---FGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGD-DYKALETLHKIARMNGKQLPL 283 (528)
T ss_pred HHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCC-hHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999888776554 589999999998888888888899999999999998 788888888776655221
Q ss_pred ------H--HHHH-HHH----HHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhc------
Q 010323 256 ------A--EFDD-LIK----ASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTI------ 316 (513)
Q Consensus 256 ------~--~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 316 (513)
. +.++ ... ..+..++......+++..+.+++.+....+.+...+. ++........+.+..
T Consensus 284 gvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~ 362 (528)
T KOG0253|consen 284 GVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLY 362 (528)
T ss_pred ceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccc
Confidence 0 0010 000 0011223345667777777777777766665554433 333333333333321
Q ss_pred --------------CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCC
Q 010323 317 --------------KLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGG 382 (513)
Q Consensus 317 --------------g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (513)
..+..... .-..+..+..++|.++.++++||+|||+.+....++.+++.+++...
T Consensus 363 ~r~~p~e~e~~~~c~~s~~~dY-rdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c---------- 431 (528)
T KOG0253|consen 363 NRFLPTELETRANCPLSVAKDY-RDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC---------- 431 (528)
T ss_pred hhcchhHHHhhhcCCccchhHH-HHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh----------
Confidence 11222222 55667788999999999999999999999999999888888777654
Q ss_pred CCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHH
Q 010323 383 FSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGG 462 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (513)
..........+...++...++. ..+.|..|++|+..|+++.|.++.++.+|+++.|.+. ...+...+....++.+
T Consensus 432 ---~~rn~~tvllf~arafisg~fq-vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~ 506 (528)
T KOG0253|consen 432 ---KTRNAYTVLLFTARAFISGAFQ-VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGA 506 (528)
T ss_pred ---cCcchhHHHHHHHHHHHhchhe-EEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHH
Confidence 2333444555666666666664 4488999999999999999999999999999999887 4444444556666666
Q ss_pred HHHHHHHHHHhhcccCCCCC
Q 010323 463 WVVVMTTFVHFFLPETKNVP 482 (513)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~ 482 (513)
++++.++...++--|+++|.
T Consensus 507 ~~ilagIavcffPiEtkGR~ 526 (528)
T KOG0253|consen 507 LFILAGIAVCFFPIETKGRS 526 (528)
T ss_pred HHHHHHHHheeeeeccCCCC
Confidence 66666666655555888775
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=287.14 Aligned_cols=388 Identities=13% Similarity=0.013 Sum_probs=280.4
Q ss_pred HHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhHH
Q 010323 23 VVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASS 102 (513)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~ 102 (513)
+|..+..++++.++...|.++++.+ .|.+.+|+|.+.++.+|+.+.+.++..++.+++|+
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a--------------------~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~ 63 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVA--------------------APTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGA 63 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778889999999999999887 56667788999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccC-CCCCccchhhHHHHHHH
Q 010323 103 VTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMA-PPRHRGAFNIGYELCTA 181 (513)
Q Consensus 103 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~ 181 (513)
++||+|||++++.+..++.++++++++++|++.++++|+++|+|.+...+. ....+.+++ |+++|+++++++.....
T Consensus 64 l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~--~~~~l~~~~~~~~~r~~~~g~~~~~~~ 141 (495)
T PRK14995 64 LGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPA--TLAGIRATFTEEKQRNMALGVWAAVGS 141 (495)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998887 777776765 67899999999999999
Q ss_pred HHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHh-hcccCCChHHHHHhCCcHHHHHH----------HHHHHhC
Q 010323 182 IGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLG-ALFLPETPNSIIQRSNDLQRAKQ----------MLQRIRG 250 (513)
Q Consensus 182 ~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~----------~~~~~~~ 250 (513)
+|..+||.+++.+.+. .+||+.|++...++++..++ .+++||+|+.. .++.|...... ..+....
T Consensus 142 ~g~~~gp~lgg~l~~~---~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~-~~~~d~~g~~~~~~~~~~l~~~~~~~~~ 217 (495)
T PRK14995 142 GGAAFGPLVGGILLEH---FYWGSVFLINVPIVLVVMGLTARYVPRQAGRR-DQPLNLGHALMLIVAILLLVYSAKTALK 217 (495)
T ss_pred HHHHHHHHHHHHhhcc---CChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CCCCChHhHHHHHHHHHHHHHHHHhccc
Confidence 9999999999988764 57999999988777765544 34577765311 11111111100 0000000
Q ss_pred CCchHHHHHH--------HHHHHHhhhhcCCcch--hhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHh-cCCC
Q 010323 251 TDDVEAEFDD--------LIKASSIAKTVNHPFK--KIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRT-IKLS 319 (513)
Q Consensus 251 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ 319 (513)
.......... .......+.+.+.+.. +++++ +.+....+..+...........+.|.+++. .|.+
T Consensus 218 ~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s 293 (495)
T PRK14995 218 GFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTH----RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLS 293 (495)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCC----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 0000000000 0000011111222322 23332 233333333444444445566677888765 7889
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHH
Q 010323 320 ESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYV 399 (513)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (513)
+.+++ ....+..++..++.++.|++.||+|+|+.+..+..+..++...+.... ...+.+......++.+
T Consensus 294 ~~~ag-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~l~G 362 (495)
T PRK14995 294 PLEAG-MFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD----------FSTQQWQAWGLMALLG 362 (495)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc----------CCCchHHHHHHHHHHH
Confidence 88888 888889999999999999999999999988877777766665544331 1123344455666677
Q ss_pred HhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhc
Q 010323 400 AGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHF 452 (513)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 452 (513)
++.+....+..... .+..|++.++.+.++.+...++|+.+++.+.+.+.++.
T Consensus 363 ~g~g~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~~ 414 (495)
T PRK14995 363 FSAASALLASTSAI-MAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSRS 414 (495)
T ss_pred HhHHHHHHHHHHHH-HhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655554433 67889999999999999999999999999999987653
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=273.01 Aligned_cols=342 Identities=12% Similarity=0.059 Sum_probs=233.2
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhh
Q 010323 68 DTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGI 147 (513)
Q Consensus 68 ~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~ 147 (513)
.|.+++|+|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..+......+......++|++.+++.|+++|++.
T Consensus 14 lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~ 93 (368)
T TIGR00903 14 LSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQ 93 (368)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHh
Confidence 45667888999999999999999999999999999999999999877665555454433333479999999999999999
Q ss_pred hhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHh-hcccCC
Q 010323 148 GFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLG-ALFLPE 226 (513)
Q Consensus 148 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e 226 (513)
+.. +. ....++|++|+++|++++++...+..+|..+++.++..+.+. +|||+.|++.++++++..+. .+++||
T Consensus 94 ~~~-~~--~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~---~gWr~~f~~~~~l~~~~~~~~~~~lp~ 167 (368)
T TIGR00903 94 PFL-LN--AFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA---GGLQLLIIPIAAVAAAGIILVLAALPA 167 (368)
T ss_pred HHH-HH--HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 864 44 455669999999999999999999999999999998887653 68999999988887765544 455899
Q ss_pred ChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhH
Q 010323 227 TPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIG 306 (513)
Q Consensus 227 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (513)
+|++.. ++.+ . ++ . ..++++++++ +.++...+..++....++.+.
T Consensus 168 ~p~~~~---~~~~---------------~---~~------~----~~~~~~ll~~----~~~~~~~~~~~~~~~~~~~~~ 212 (368)
T TIGR00903 168 LPFQAA---EGFG---------------F---KD------A----VKEFGALAGR----KDLWIIGAILGFGVALFDNLA 212 (368)
T ss_pred CCCCCC---CCcc---------------h---HH------H----HHHHHHHHcC----hhHHHHHHHHHHHHHHHHHHH
Confidence 875310 0000 0 00 0 0013344433 334555566666667777888
Q ss_pred hcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcc---hHHHH-hHHHHHHHHHHHHHHHHhhcCCCCC
Q 010323 307 FYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRK---VLFLV-GGIQMLAAQVMIGSIMENQLGDQGG 382 (513)
Q Consensus 307 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (513)
.|.|.++++.|++.. .+ .......+.+.++ .++++||..|| +.... ...+.++....+...
T Consensus 213 ~wlp~~L~~~g~s~~-~~-~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~---------- 277 (368)
T TIGR00903 213 IWLEAALRPAGLEDI-AG-DAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE---------- 277 (368)
T ss_pred HHHHHHHHHCCCChH-HH-HHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc----------
Confidence 999999988887754 34 4444444444444 47777876543 33222 222222222222211
Q ss_pred CCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc-hhhhHHHH
Q 010323 383 FSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK-AGIFFFFG 461 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 461 (513)
.+.+......++.+++....+ +..+.+.+|.+|++.|+++.|+.+..+++++..+|.+.+.+.. + ...+..++
T Consensus 278 ---~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~ 351 (368)
T TIGR00903 278 ---LNRLALFAFIGIAGLLMLPAY-AIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLA 351 (368)
T ss_pred ---cccHHHHHHHHHHHHhhhhhH-HHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHH
Confidence 122233333333333333332 3345677899999999999999999999999999999988874 4 34455555
Q ss_pred HHHHHHHHHH
Q 010323 462 GWVVVMTTFV 471 (513)
Q Consensus 462 ~~~~~~~~~~ 471 (513)
+...+.++..
T Consensus 352 ~~~~i~~~~~ 361 (368)
T TIGR00903 352 ILITIAFAIA 361 (368)
T ss_pred HHHHHHHHHH
Confidence 5555544443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=280.24 Aligned_cols=408 Identities=14% Similarity=0.011 Sum_probs=257.9
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 010323 20 TSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLF 99 (513)
Q Consensus 20 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~ 99 (513)
++++|.++..+++.....+.+...++.. .|.+.++ |++.++.+++.+++.+++.+++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~ 82 (452)
T PRK11273 24 RRLRWQIFLGIFFGYAAYYLVRKNFALA--------------------MPYLVEQ-GFSRGDLGFALSGISIAYGFSKFI 82 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------hHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555555555555555555444333 2334555 889999999999999999999999
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHHHHHhhhch----hHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhH
Q 010323 100 ASSVTRAFGRRASILVGGAAFLAGSALGGAAL----NIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIG 175 (513)
Q Consensus 100 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 175 (513)
+|+++||+|||++++.+.++.+++.+++++++ +++.+++.|++.|++.+...+. ....+.|++|+++|++++++
T Consensus 83 ~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~--~~~~~~~~~~~~~r~~~~~~ 160 (452)
T PRK11273 83 MGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPP--CGRTMVHWWSQKERGGIVSV 160 (452)
T ss_pred hhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchH--HHHHHHHhCChHHHHHHHHH
Confidence 99999999999999999999999999888763 7888999999999999988877 67788999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHhhhcccCCccchHHHHHhhHHHHHHHH-HhhcccCCChHHHHHhCCcHHHHHHHHHHHhCCCc
Q 010323 176 YELCTAIGIL-AASLINYGTQKIKGGWGWRISLAMAAAPALILT-LGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDD 253 (513)
Q Consensus 176 ~~~~~~~G~~-~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (513)
+..+.++|.. .+++++..+... .+||+.|++.+++.++.. +..+++||+|+....++ .++.++. .+
T Consensus 161 ~~~~~~~g~~~~~~l~~~~~~~~---~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~------~~- 228 (452)
T PRK11273 161 WNCAHNVGGGLPPLLFLLGMAWF---NDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPP--IEEYKND------YP- 228 (452)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCC--hhhhhhc------cc-
Confidence 9999998864 455543323221 379999999888776654 44556788875321110 0000000 00
Q ss_pred hHHHHHHHHHHHHhhhhcCCcchhhcc-cCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHh-cCCCchhHHHHHHHHH
Q 010323 254 VEAEFDDLIKASSIAKTVNHPFKKIIQ-RKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRT-IKLSESTSLLMSAVVT 331 (513)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~ 331 (513)
++.+.+++++.+.++.++ ...+++.++...+..++.....+....|.|.++++ .|++..+++ ......
T Consensus 229 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~-~~~~~~ 298 (452)
T PRK11273 229 ---------DDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSS-WAYFLY 298 (452)
T ss_pred ---------cccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHH
Confidence 000000001112222211 12223444444444444444556677788998876 688877777 667778
Q ss_pred HHHHHHHHHHHHHhhhcc--CcchHHHH-hHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccc
Q 010323 332 GGIGTLSTIISMILVDKL--GRKVLFLV-GGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGP 408 (513)
Q Consensus 332 ~~~~~~~~~~~g~l~d~~--g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (513)
.++.+++.++.|+++||+ +||+...+ ...+..++.+.+... ...+.+.........+.... ....
T Consensus 299 ~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~-~~~~ 366 (452)
T PRK11273 299 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN-----------PAGNPTVDMACMIVIGFLIY-GPVM 366 (452)
T ss_pred HHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh-----------cccChHHHHHHHHHHHHHHH-hHHH
Confidence 888899999999999998 44443222 222222222222111 11222222222223322211 1111
Q ss_pred cccceecccCChhhhhhHhHHHHHHHHHHHHH-HHHHhHHHHHhcchhhhHHHHHHHHHHHHHHHhhcccCCCCCHH
Q 010323 409 LGFLVPSEIFPLEIRSAGQSINVAVGFLFTFL-IAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPETKNVPIE 484 (513)
Q Consensus 409 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (513)
....+..|.+|++.||++.|+.+...++++.+ +|.+.|.+.|+.++...+.....+.+++++...+....++|+.+
T Consensus 367 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (452)
T PRK11273 367 LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRHHE 443 (452)
T ss_pred HHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 22234469999999999999999999998765 79999999999886555444444444444444444333344333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=264.23 Aligned_cols=334 Identities=16% Similarity=0.134 Sum_probs=242.7
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhh
Q 010323 69 THISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIG 148 (513)
Q Consensus 69 ~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~ 148 (513)
|.+.+++|+++++.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|+++|++.+
T Consensus 44 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 123 (394)
T PRK10213 44 TPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALG 123 (394)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhH
Confidence 44577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhc-ccCCC
Q 010323 149 FANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGAL-FLPET 227 (513)
Q Consensus 149 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~ 227 (513)
...+. ..+++.|++|+++|+++.++...+.++|..++|.+++.+.+. ++||+.|++.++++++..+... ..||+
T Consensus 124 ~~~~~--~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~l~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 124 GFWAM--SASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL---IGWRNVFNAAAVMGVLCIFWIIKSLPSL 198 (394)
T ss_pred HHHHH--HHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 99998 899999999999999999999999999999999999887654 5799999998877766544433 36765
Q ss_pred hHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHh
Q 010323 228 PNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGF 307 (513)
Q Consensus 228 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (513)
|++ ++ +...+.++.++ ++.++...+..+...........
T Consensus 199 ~~~----~~---------------------------------~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~ 237 (394)
T PRK10213 199 PGE----PS---------------------------------HQKQNTFRLLQ----RPGVMAGMIAIFMSFAGQFAFFT 237 (394)
T ss_pred Ccc----cc---------------------------------cchhHHHHHhc----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 420 00 00001122222 22222222222222222333333
Q ss_pred c-HHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 010323 308 Y-APVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKG 386 (513)
Q Consensus 308 ~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (513)
+ .|.+.++.|++....+ ......+++.+++..+.+++.||.+ |+.+..+..+..+..+.+.... +
T Consensus 238 ~~~p~~~~~~g~s~~~~g-~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~------------~ 303 (394)
T PRK10213 238 YIRPVYMNLAGFGVDGLT-LVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG------------S 303 (394)
T ss_pred HHHHHHHHhcCCChhHHH-HHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh------------h
Confidence 4 5778788899988777 7777788899999999999999954 4444433333333322222221 3
Q ss_pred hhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHHH
Q 010323 387 NAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWV 464 (513)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (513)
+.+......++.+++.+...... ...+.+..| +.++...+......++|..+++.+.|.+.|..+....+..+++.
T Consensus 304 ~~~~~~~~~~l~G~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~ 379 (394)
T PRK10213 304 DKIVATGVAIIWGLTFALVPVGW-STWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTL 379 (394)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHH
Confidence 34555556666676665554333 334456677 44667777777888899999999999999988866555554433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=265.87 Aligned_cols=343 Identities=15% Similarity=0.109 Sum_probs=241.0
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhh
Q 010323 68 DTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGI 147 (513)
Q Consensus 68 ~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~ 147 (513)
.|.+++|+|++.++.+++.+.+.+++.++++++|+++||+|||+++..+..+.+++.+++++++|++.+++.|+++|++.
T Consensus 26 l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~ 105 (382)
T PRK10091 26 LTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPH 105 (382)
T ss_pred hHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhh
Confidence 34557778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHh-hcccCC
Q 010323 148 GFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLG-ALFLPE 226 (513)
Q Consensus 148 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e 226 (513)
+...+. ...++.|++++++|++++++...+..+|..+++.+++.+.+. .+||+.|++.+++.++..+. ..++||
T Consensus 106 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~gwr~~f~~~~~~~~~~~~~~~~~lp~ 180 (382)
T PRK10091 106 GAFFGV--GAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE---FSWRYTFLLIAVFNIAVLASIYFWVPD 180 (382)
T ss_pred HHHHHH--HHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh---ccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 988887 778899999999999999999999999999999998877653 57999999988877665543 344777
Q ss_pred ChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhH
Q 010323 227 TPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIG 306 (513)
Q Consensus 227 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (513)
.++ +.+ .+ .+ ..+ +.+++ ++.+. ......+.........
T Consensus 181 ~~~----~~~-~~------------------~~-------------~~~-~~~~~---~~~~~-~~~~~~~~~~~~~~~~ 219 (382)
T PRK10091 181 IRD----EAK-GG------------------LR-------------EQF-HFLRS---PAPWL-IFAATMFGNAGVFAWF 219 (382)
T ss_pred CCc----ccc-cC------------------HH-------------HHH-HHhcC---hHHHH-HHHHHHHHHHHHHHHH
Confidence 542 000 00 00 000 11111 11122 2222222222222223
Q ss_pred hcH-HHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 010323 307 FYA-PVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSK 385 (513)
Q Consensus 307 ~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (513)
.+. |++.+..|.++.+.+ .......++.++++++.+++.||+++|+.+..+..+..++.+++....
T Consensus 220 ~~~~~~~~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~------------ 286 (382)
T PRK10091 220 SYIKPYMMFISGFSETSMT-FIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG------------ 286 (382)
T ss_pred HHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH------------
Confidence 333 444455788888887 788888899999999999999999999998888777766665544321
Q ss_pred chhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhc-chhhhHHHHHHH
Q 010323 386 GNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHF-KAGIFFFFGGWV 464 (513)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 464 (513)
++.+......++.+.+......+.......+..|++.++.+ ..+....+|.+++|.+.|.+.|.. ++...+...++.
T Consensus 287 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~ 364 (382)
T PRK10091 287 GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALL 364 (382)
T ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHH
Confidence 22233333333444443333333333333455555555554 346678899999999999999964 555555444444
Q ss_pred HHHHHHH
Q 010323 465 VVMTTFV 471 (513)
Q Consensus 465 ~~~~~~~ 471 (513)
.++.+..
T Consensus 365 ~~~~~~~ 371 (382)
T PRK10091 365 SFAAMSS 371 (382)
T ss_pred HHHHHHH
Confidence 4333333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=271.96 Aligned_cols=385 Identities=22% Similarity=0.242 Sum_probs=269.1
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 010323 20 TSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLF 99 (513)
Q Consensus 20 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~ 99 (513)
+++.+.....+.+..+.++++....+.. .|.+.+++|.+..+.+++.+.+.++..++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (398)
T TIGR00895 12 SRYQWRAIILSFLIMLMDGYDLAAMGFA--------------------APAISAEWGLDPVQLGFLFSAGLIGMAFGALF 71 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhh--------------------HHHHhhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566667777777665544 34556677889999999999999999999999
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHH
Q 010323 100 ASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELC 179 (513)
Q Consensus 100 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 179 (513)
.|+++||+|||+++..+.++.+++.++..++++++.+++.|++.|++.+...+. ..+++.|++|+++|++++++...+
T Consensus 72 ~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~r~~~~~~~~~~ 149 (398)
T TIGR00895 72 FGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPN--LNALVSEYAPKRFRGTAVGLMFCG 149 (398)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhh--HHHHHHHHcCHHhhchhHhhHhhH
Confidence 999999999999999999999999999999999999999999999999999988 899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHH-HhhcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHH
Q 010323 180 TAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILT-LGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEF 258 (513)
Q Consensus 180 ~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (513)
..+|..+++.+++.+.+. .+||+.|++.++..++.. +...++||++++..++ + .++.++..++.......+.+.
T Consensus 150 ~~~g~~~~~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 224 (398)
T TIGR00895 150 YPIGAAVGGFLAGWLIPV---FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-R-PETVRRIVNAIAPQMQAEAQS 224 (398)
T ss_pred HHHHHHHHHHHHHHHhhc---ccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-C-HHHHHHHHHHHHHhccccccc
Confidence 999999999998776543 579999998875555544 4455688887665443 2 233322222221111000000
Q ss_pred HHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Q 010323 259 DDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLS 338 (513)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 338 (513)
+..++...++..+...+..++.+..+ ......+..+...........+.|++.++.+.+..+.+ .......++.+++
T Consensus 225 -~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~ 301 (398)
T TIGR00895 225 -ALPEQKATQGTKRSVFKALFQGKTAR-ITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAA-TGGALFNFGGVIG 301 (398)
T ss_pred -cccccccccchhhHHHHHHhcchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHH
Confidence 00000000000011122222222222 22233333334444556677788888888899888877 7788888999999
Q ss_pred HHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccC
Q 010323 339 TIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIF 418 (513)
Q Consensus 339 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (513)
.++.+++.||+++|+... ...+..+...++.... .+.+......++.+++.+... +....+..|.+
T Consensus 302 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~ 367 (398)
T TIGR00895 302 SIIFGWLADRLGPRVTAL-LLLLGAVFAVLVGSTL------------FSPTLLLLLGAIAGFFVNGGQ-SGLYALMALFY 367 (398)
T ss_pred HHHHHHHHhhcchHHHHH-HHHHHHHHHHHHHHHh------------hCHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcC
Confidence 999999999999984443 3333333333322211 234444555566666665554 34456668999
Q ss_pred ChhhhhhHhHHHHHHHHHHHHHHHHHhHHH
Q 010323 419 PLEIRSAGQSINVAVGFLFTFLIAQTFLAM 448 (513)
Q Consensus 419 p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 448 (513)
|++.|+++.|+.+....++.+++|.+.|.+
T Consensus 368 ~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 368 PTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 999999999999999999999999998865
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=262.13 Aligned_cols=379 Identities=14% Similarity=0.076 Sum_probs=262.2
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccc-cccccchhHHHHHHHHHHHHHHHHHH
Q 010323 20 TSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHIS-NYCKFDSQLLTSFTSSLYIAGLIASL 98 (513)
Q Consensus 20 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~~~~~s~~~l~~~i~~~ 98 (513)
-|+......+.....|..++..+.+ .+.+. +++|+|.+|.+++.+++.+++.++.+
T Consensus 32 a~r~l~~s~~~f~~~F~~w~~~~~l-----------------------~~~~~~~~~~ls~~q~g~l~ai~~l~~al~ri 88 (462)
T PRK15034 32 ARRNLWISVSCLLLAFCVWMLFSAV-----------------------TVNLNKIGFNFTTDQLFLLTALPSVSGALLRV 88 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555556666655443 22333 37899999999999999999999999
Q ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhc-----hhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchh
Q 010323 99 FASSVTRAFGRRASILVGGAAFLAGSALGGAA-----LNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFN 173 (513)
Q Consensus 99 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~ 173 (513)
+.|++.||+|.|+++.++.+++++.++..+++ ++++.+++.|++.|++ +..++. ....+++|+|+++||+++
T Consensus 89 p~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~--~~~~vs~wfp~~~rG~A~ 165 (462)
T PRK15034 89 PYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFAS--SMGNISFFFPKAKQGSAL 165 (462)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHH--HHHHHHHHCCHhHhHHHH
Confidence 99999999999999999999999999999987 8999999999999998 668888 888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhc-----c----------cCCccchHHHHHhhHHHHHHHHHhhcc-cCCChHHHHHhCCc
Q 010323 174 IGYELCTAIGILAASLINYGTQ-----K----------IKGGWGWRISLAMAAAPALILTLGALF-LPETPNSIIQRSND 237 (513)
Q Consensus 174 ~~~~~~~~~G~~~~~~l~~~~~-----~----------~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~ 237 (513)
|+.....++|..+++++...+. . ..+..+||...++..++.++..++.++ .++.|. +
T Consensus 166 Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~----~--- 238 (462)
T PRK15034 166 GINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS----S--- 238 (462)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc----c---
Confidence 9997666777765555443221 0 011346999988888877776655554 444331 0
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcC
Q 010323 238 LQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIK 317 (513)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 317 (513)
+.+.++.++. .+++..|.+.+..++.+.++..+..+.|++.++ .
T Consensus 239 ----------------------------------~~~~~~~~~v-lk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~ 282 (462)
T PRK15034 239 ----------------------------------RASIADQLPV-LQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-Q 282 (462)
T ss_pred ----------------------------------ccCHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 1111222111 122234445555666777778888899988866 3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHH
Q 010323 318 LSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICV 397 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (513)
++..... .......+...+.++++|+++||+|+|+++.++.+.+.++...+...... ....+.+........
T Consensus 283 ~~~~~~l-~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~-------~~~~~~~~~~~~~~~ 354 (462)
T PRK15034 283 FPDVNIL-RLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPG-------TGSGNFIAFYAVFMG 354 (462)
T ss_pred cChHHHH-HHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcc-------ccccHHHHHHHHHHH
Confidence 3333222 33445567888999999999999999999998888777766544333200 011234444444444
Q ss_pred HHHhhhccccccccceecccCCh---------------------hhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcch--
Q 010323 398 YVAGFAVSWGPLGFLVPSEIFPL---------------------EIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKA-- 454 (513)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~p~---------------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-- 454 (513)
...+.+.+..+. +-++.+.+|+ ++.|.+.|+....+.+|+++.|.+++...+..+.
T Consensus 355 l~~~~G~gngsv-fk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~ 433 (462)
T PRK15034 355 LFLTAGLGSGST-FQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPV 433 (462)
T ss_pred HHHHhcccchHH-HHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcH
Confidence 445555554444 4344576764 2577889999999999999999999999988773
Q ss_pred hhhHHHHHHHHHHHHHHHhhcc
Q 010323 455 GIFFFFGGWVVVMTTFVHFFLP 476 (513)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~ 476 (513)
..++.+.+...++..+.++++-
T Consensus 434 ~~~~~~~~~~~~~~~~~w~~y~ 455 (462)
T PRK15034 434 GAMKVFLIFYIVCVLLTWLVYG 455 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3355556666666666665543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=274.72 Aligned_cols=395 Identities=14% Similarity=0.076 Sum_probs=264.0
Q ss_pred chHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhh----hhhccccccccccccccchhHHHHHHHHHHHHHH
Q 010323 19 ITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPK----VYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGL 94 (513)
Q Consensus 19 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~ 94 (513)
..+.++.++.++.++....+.|...++.+. +...++--.. ...+...+..-..|++++..+.|++.+.+.+++.
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~ 90 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTM--VAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQI 90 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEE--EEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHH
Confidence 455667777777888888888988887662 2222110000 0000000112234899999999999999999999
Q ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhc--hhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccch
Q 010323 95 IASLFASSVTRAFGRRASILVGGAAFLAGSALGGAA--LNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAF 172 (513)
Q Consensus 95 i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~ 172 (513)
+++++.|+++||+|||+++..+.++++++++++.++ .+++.+++.|+++|++.+...+. ...++.|++|+++|+++
T Consensus 91 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~--~~~~~~~~~~~~~r~~~ 168 (465)
T TIGR00894 91 IIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPA--THKIIVKWAPPKERSRL 168 (465)
T ss_pred HHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhh--HHHHHHhcCCHHHHHHH
Confidence 999999999999999999999999999998887554 56888999999999999999999 99999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcc-cCCChHHHHHhCCcHHHHHHHHHHHhCC
Q 010323 173 NIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALF-LPETPNSIIQRSNDLQRAKQMLQRIRGT 251 (513)
Q Consensus 173 ~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~ 251 (513)
+++...+..+|..+++.+++.+.+.. .+||+.|++.++++++..+.+++ .+|+|+... ..+.++. +..+
T Consensus 169 ~~~~~~~~~~g~~i~~~l~~~l~~~~--~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~-~~i~----- 238 (465)
T TIGR00894 169 LGMSTSGFQLGTFIFLPISGWLCESW--GGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP--CISKFEK-KYIN----- 238 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC--CCCHHHH-HHHH-----
Confidence 99999999999999999988776431 27999999999988776665554 566664210 0001110 0000
Q ss_pred CchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHh-cCCCchhHHHHHHHH
Q 010323 252 DDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRT-IKLSESTSLLMSAVV 330 (513)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~ 330 (513)
+..++++.+.+.+.++++.+ +++.++...+..+......+.+..|.|.++++ .|.+..+.+ .....
T Consensus 239 --------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g-~~~~~ 305 (465)
T TIGR00894 239 --------SSLQGQKGSTRQSLPIKAIP----KSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENG-LLSSL 305 (465)
T ss_pred --------hhcccccCCCCCCCCHHHHh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhH-HHHHH
Confidence 00000000011122344443 33445556666666666677788899988754 788888887 77778
Q ss_pred HHHHHHHHHHHHHHhhhccCcchHH--------HHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhh
Q 010323 331 TGGIGTLSTIISMILVDKLGRKVLF--------LVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGF 402 (513)
Q Consensus 331 ~~~~~~~~~~~~g~l~d~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (513)
..++..++.++.|+++||+++|+.. ..+......+...+.... ...+.+..+....+.+.+.
T Consensus 306 ~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~ 375 (465)
T TIGR00894 306 PYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY----------LSAAFYLTIIILTLANAVS 375 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCchHHHHHHHHHHHHHh
Confidence 8899999999999999997644211 111111111111111110 0122233333334433333
Q ss_pred hccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhc
Q 010323 403 AVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHF 452 (513)
Q Consensus 403 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 452 (513)
+... +.......|..| +.+|.+.|+.+..+.++++++|.+.+.+.+..
T Consensus 376 ~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~ 423 (465)
T TIGR00894 376 SGPL-AGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQD 423 (465)
T ss_pred hhhh-hhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCC
Confidence 3222 222334456666 58999999999999999999999999887754
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=279.43 Aligned_cols=354 Identities=13% Similarity=0.108 Sum_probs=240.5
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHH-HHHHHHhhh
Q 010323 69 THISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIF-GRVLLGVGI 147 (513)
Q Consensus 69 ~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~Gi~~ 147 (513)
+.+.+++|+|.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.++++++++++++++.+++ .|+++|++.
T Consensus 43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~ 122 (455)
T TIGR00892 43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGL 122 (455)
T ss_pred HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcc
Confidence 4456778999999999999999999999999999999999999999999999999999999999998875 579999999
Q ss_pred hhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhccc-CC
Q 010323 148 GFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFL-PE 226 (513)
Q Consensus 148 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e 226 (513)
+...+. ...++.++++ ++|+++.++...+..+|..++|.+++.+.+. .|||+.|++.+++.++..+..+++ ++
T Consensus 123 ~~~~~~--~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~---~gwr~~f~~~~~~~~~~~v~~~~~~~~ 196 (455)
T TIGR00892 123 AFNFQP--SLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES---FGWRGSFLILGGLLLHCCVCGALMRPV 196 (455)
T ss_pred hhhhhH--HHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 877666 6678889996 7899999999999999999999988776653 579999999998777655444443 32
Q ss_pred ChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcc--hhhcccCchhHHHHHHHHHHHhhhcchhh
Q 010323 227 TPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPF--KKIIQRKYRPQLVMAILIPFFLQVTGINV 304 (513)
Q Consensus 227 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (513)
.+... +.+ ++.. +.....+..+.. + . ....+...+. .+.++ ++.++......+........
T Consensus 197 ~~~~~--~~~--~~~~---~~~~~~~~~~~~--~--~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ 259 (455)
T TIGR00892 197 GPSQR--VSK--SKSK---EGLPPDGSTKKL--S--K--KSTAEKINRFLDFSLFT----HRGFLVYLSGNVIMFLGFFA 259 (455)
T ss_pred Ccccc--ccc--cccc---ccCCCCCccccc--c--c--cchhhhhhhhcchHHhc----CchHHHHHHHHHHHHHHccc
Confidence 22100 000 0000 000000000000 0 0 0000000011 11222 22334444444444444455
Q ss_pred hHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc--CcchHHHHhHHHH--HHHHHHHHHHHHhhcCCC
Q 010323 305 IGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKL--GRKVLFLVGGIQM--LAAQVMIGSIMENQLGDQ 380 (513)
Q Consensus 305 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 380 (513)
...+.+.+.++.|++..+.+ ......+++.++++++.+++.||. ++|+...+..... +++.++....
T Consensus 260 ~~~~l~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-------- 330 (455)
T TIGR00892 260 PIIFLVPYAKDKGVDEYEAA-FLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA-------- 330 (455)
T ss_pred hHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 56677888888899888887 777888899999999999999974 3343333332222 2222222211
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc-hhhhHH
Q 010323 381 GGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK-AGIFFF 459 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 459 (513)
++.+.......+.+++.+... +....++.|.+|++.++++.|+.+....+|++++|.+.|.+.+..+ +...+.
T Consensus 331 -----~~~~~~~i~~~~~G~~~g~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~ 404 (455)
T TIGR00892 331 -----GDYTGLVIYCIFFGLSFGSVG-ALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFY 404 (455)
T ss_pred -----chHHHHHHHHHHHHHHhchHH-HHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHH
Confidence 344455555666666655443 3345555789999999999999999999999999999999998875 543333
Q ss_pred H
Q 010323 460 F 460 (513)
Q Consensus 460 ~ 460 (513)
.
T Consensus 405 ~ 405 (455)
T TIGR00892 405 A 405 (455)
T ss_pred H
Confidence 3
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=266.10 Aligned_cols=344 Identities=15% Similarity=0.161 Sum_probs=244.5
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhc--------hhHHHHHHHHHH
Q 010323 71 ISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAA--------LNIYMLIFGRVL 142 (513)
Q Consensus 71 i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------~~~~~l~~~r~l 142 (513)
+++++|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+.+.++ .+++.+++.|++
T Consensus 42 i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 121 (399)
T PRK05122 42 VHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLL 121 (399)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHH
Confidence 456778899999999999999999999999999999999999999999888877766553 257789999999
Q ss_pred HHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhc
Q 010323 143 LGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGAL 222 (513)
Q Consensus 143 ~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 222 (513)
+|++.+...+. ...++.|++|+++|++++++...+..+|..+++.+++.+.+. .|||+.+++..+..++..+...
T Consensus 122 ~G~~~~~~~~~--~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~ 196 (399)
T PRK05122 122 LGIGESLAGTG--SILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW---GGLAGLGLLIMLLALLGLLLAR 196 (399)
T ss_pred HHhhHHhhcch--HHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHh
Confidence 99999999888 888889999999999999999999999999999998877653 5799998877766554443333
Q ss_pred ccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcch
Q 010323 223 FLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGI 302 (513)
Q Consensus 223 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (513)
..|++++. +++ +.++++.+++...... .. ......+
T Consensus 197 ~~~~~~~~---~~~-----------------------------------~~~~~~~~~~~~~~~~--~~----~~~~~~~ 232 (399)
T PRK05122 197 PRPAVPPV---KGE-----------------------------------RLPFRRVLGRVWPYGM--GL----ALASIGF 232 (399)
T ss_pred cCCCCCCC---Ccc-----------------------------------chhHHHHHHHHHHHHH--HH----HHHHHHH
Confidence 33432210 000 0011111111111111 11 1111223
Q ss_pred hhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCC
Q 010323 303 NVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGG 382 (513)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (513)
.....+.+.+.++.+.+ ..+ .......++.+++.++.+++.||+++|+.+..+..+..++...+...
T Consensus 233 ~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---------- 299 (399)
T PRK05122 233 GTIATFITLYYAARGWD--GAA-LALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA---------- 299 (399)
T ss_pred HHHHHHHHHHHHHcccc--cch-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh----------
Confidence 34455667776666653 233 44566778888999999999999999998887777766666555442
Q ss_pred CCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHH
Q 010323 383 FSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGG 462 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (513)
++.+.......+.+++.+..++.. .....|..|++.|+++.|+.+....++..+++.+.|.+.++.++...+...+
T Consensus 300 ---~~~~~~~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 375 (399)
T PRK05122 300 ---PSPWMALIGAALTGFGFSLVFPAL-GVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAA 375 (399)
T ss_pred ---ccHHHHHHHHHHHHHhHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 334445555566666665544333 3334688899999999999999999999999999999999888766555555
Q ss_pred HHHHHHHHHHhhcccCCC
Q 010323 463 WVVVMTTFVHFFLPETKN 480 (513)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~ 480 (513)
.+.+.+.+..+..+++++
T Consensus 376 ~~~~~~~~~~~~~~~~~~ 393 (399)
T PRK05122 376 LAALLGLALTWLLYRRAP 393 (399)
T ss_pred HHHHHHHHHHHHhccccc
Confidence 555555555555554443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=270.95 Aligned_cols=347 Identities=14% Similarity=0.090 Sum_probs=248.6
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhh
Q 010323 68 DTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGI 147 (513)
Q Consensus 68 ~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~ 147 (513)
.|.+++++|+|.++.+++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++++++|++.+++.|++.|++.
T Consensus 26 ~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 105 (377)
T TIGR00890 26 APPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGV 105 (377)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45567778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhc-ccCC
Q 010323 148 GFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGAL-FLPE 226 (513)
Q Consensus 148 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e 226 (513)
+...+. ....+.|++| ++|+++.++...+.++|..+++.+...+.+ ..+||+.|++.+++.++..+..+ +++|
T Consensus 106 ~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 179 (377)
T TIGR00890 106 GIAYGI--ALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVIN---LEGVPAAFIYMGIIFLLVIVLGAFLIGY 179 (377)
T ss_pred HHHHHh--HHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHHheec
Confidence 988877 7778888887 689999999999999998876655444332 25799999999988777665544 4555
Q ss_pred ChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhH
Q 010323 227 TPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIG 306 (513)
Q Consensus 227 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (513)
+|+... +++ ++. ++++.+.++.++++. ++...+..+..........
T Consensus 180 ~~~~~~-~~~---------------~~~--------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 225 (377)
T TIGR00890 180 PPGQLI-KTN---------------IEV--------------SVKDYTVWEMLRTPQ----FWVLYLSFFLNAVSGLLLI 225 (377)
T ss_pred Cchhcc-ccC---------------ccc--------------chhhhhHHHHHcCcc----HHHHHHHHHHHhHHHHHHH
Confidence 432100 000 000 000011222332221 2222222222222223334
Q ss_pred hcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 010323 307 FYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKG 386 (513)
Q Consensus 307 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (513)
.+.+.+.++.+.+..+.+ .......+..++++++.+++.||++||+.+..+..+..++.+.+... +..
T Consensus 226 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 293 (377)
T TIGR00890 226 GLYKPYGQSLGLSDGFLV-LAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI-----------PML 293 (377)
T ss_pred HHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc-----------ccc
Confidence 455566677888877766 77788889999999999999999999999888877777766655432 111
Q ss_pred hhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHHHHH
Q 010323 387 NAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVV 466 (513)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (513)
..+.......+.+.+.+... +....+..|.+|+++|+++.|+.+....+|+.++|.+.+.+.++.++...+...+++.+
T Consensus 294 ~~~~~~~~~~~~g~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~ 372 (377)
T TIGR00890 294 NDVLFLATVALVFFTWGGTI-SLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFAL 372 (377)
T ss_pred hhHHHHHHHHHHHHHhccch-hccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHH
Confidence 22222233344444444433 33344567999999999999999999999999999999999998887655555444433
Q ss_pred H
Q 010323 467 M 467 (513)
Q Consensus 467 ~ 467 (513)
.
T Consensus 373 ~ 373 (377)
T TIGR00890 373 T 373 (377)
T ss_pred H
Confidence 3
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=265.52 Aligned_cols=374 Identities=12% Similarity=0.037 Sum_probs=263.2
Q ss_pred HHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhHHH
Q 010323 24 VLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSV 103 (513)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l 103 (513)
+.+.+.+.++.++.+.+....+.. .|.+.+++|+|.++.+++.+.+.+++.+++++.|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~g~~--------------------~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l 65 (394)
T PRK03699 6 IKLTWISFLSYALTGALVIVTGMV--------------------MGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWL 65 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh--------------------hHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455567778888887776665 445677789999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHH
Q 010323 104 TRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIG 183 (513)
Q Consensus 104 ~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 183 (513)
.||+|||+++..+.++.+++.++++++++++.+++.|+++|++.+...+. ...++.|++|+++|+++++.......+|
T Consensus 66 ~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~--~~~~i~~~~~~~~r~~~~~~~~~~~~~g 143 (394)
T PRK03699 66 MEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSI--GTFLITHVYEGKQRGSRLLFTDSFFSMA 143 (394)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccc--hhHHhhhhcccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988887 8889999999999999999998888999
Q ss_pred HHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHH
Q 010323 184 ILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIK 263 (513)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (513)
..++|.+.+.+... ..+||+.|.+.+++.++..+..++ ++.|+. ++++ +
T Consensus 144 ~~~~~~~~~~l~~~--~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~--~------------------------ 192 (394)
T PRK03699 144 GMIFPIIAAYLLAR--SIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHA--P------------------------ 192 (394)
T ss_pred HHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccC--c------------------------
Confidence 99998887655321 258999999888877665544333 222210 0000 0
Q ss_pred HHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHH-hcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 010323 264 ASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFR-TIKLSESTSLLMSAVVTGGIGTLSTIIS 342 (513)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (513)
++.+.. .+...+ +.++...+..++.....+.+..|.|.+++ +.|++..+.+ .......++..+++++.
T Consensus 193 -----~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~ 261 (394)
T PRK03699 193 -----KADKPV----AKEKWG-IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAG-NLVSNFWMAYMVGMWIF 261 (394)
T ss_pred -----cccCcc----ccccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhh-HHHHHHHHHHHHHHHHH
Confidence 000000 011111 22333334444444455667788998885 5789888877 77777888899999999
Q ss_pred HHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhh
Q 010323 343 MILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEI 422 (513)
Q Consensus 343 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 422 (513)
++++||+++|+.+.....+..+...++... ++.+......++.+++.+..++ .......+..| +.
T Consensus 262 g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~-~~ 326 (394)
T PRK03699 262 SFIVRFFDLQRILTVLAGLALVLMYLFVNT-------------DDPSHLLYAILGLGFFSSAIYT-TIITLGSQQTK-VA 326 (394)
T ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHc-------------CCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHcc-CC
Confidence 999999999998877665555544333221 2233333344445544443332 22334445555 44
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHHHHHHHHHHHhhcc
Q 010323 423 RSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLP 476 (513)
Q Consensus 423 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (513)
++...|.......+|..++|.+.|.+.+..++...+.....+.+++.+.....+
T Consensus 327 ~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 327 SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence 567788888889999999999999999988865544433333444433334433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=276.09 Aligned_cols=359 Identities=12% Similarity=0.052 Sum_probs=226.8
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhh
Q 010323 69 THISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIG 148 (513)
Q Consensus 69 ~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~ 148 (513)
|.+.+++|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.+++.|++.|++.+
T Consensus 60 ~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~ 139 (476)
T PLN00028 60 PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLA 139 (476)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcc----c--CCccchHHHHHhhHHHHHHHHHhhc
Q 010323 149 FANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQK----I--KGGWGWRISLAMAAAPALILTLGAL 222 (513)
Q Consensus 149 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~----~--~~~~~wr~~f~~~~~~~~~~~~~~~ 222 (513)
... . ...+++|++|+++|++++++.....++|..+++.+...+.. . .+..|||+.|++.+++.++..+..+
T Consensus 140 ~~~-~--~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~ 216 (476)
T PLN00028 140 TFV-S--CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVL 216 (476)
T ss_pred hhH-H--HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 643 3 45678999999999999999987777777776655543321 1 1124899999999988877665555
Q ss_pred ccC-CChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcc
Q 010323 223 FLP-ETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTG 301 (513)
Q Consensus 223 ~~~-e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (513)
+++ +.|+. + .++.++ ... .++.+....+++.+++ ++ .+...+.++.....
T Consensus 217 ~~~~~~p~~-----~-~~~~~~-------~~~------------~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~ 267 (476)
T PLN00028 217 TLGQDLPDG-----N-YRELKK-------SGT------------MPKDSFSKVLRYGVTN---YR-TWILALTYGYSFGV 267 (476)
T ss_pred HHcCcCCCC-----c-hhhHHh-------cCc------------cccccHHHHHHHHHcC---ch-hHHHHHHHHHHHHH
Confidence 544 33310 0 000000 000 0000000011222221 22 22233333333333
Q ss_pred hhhhHhcHHHHHH-hcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcch-----H-H-HHhHHHHHHHHHHHHHHH
Q 010323 302 INVIGFYAPVLFR-TIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKV-----L-F-LVGGIQMLAAQVMIGSIM 373 (513)
Q Consensus 302 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-----~-~-~~~~~~~~~~~~~~~~~~ 373 (513)
......+.|.++. +.|++...++ .......++.+++++++|+++||++||+ . . .....+.++..+++..
T Consensus 268 ~~~~~~~~p~~l~~~~g~s~~~a~-~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~-- 344 (476)
T PLN00028 268 ELTMDNIIAEYFYDRFGLSLETAG-AIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR-- 344 (476)
T ss_pred HHHHHhHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc--
Confidence 3445566777764 5699988887 7888888999999999999999998652 1 1 1111111121121111
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc
Q 010323 374 ENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK 453 (513)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (513)
.++.+......++++.+.....+ ..+.+..+.. ++.+|++.|+.+..+.+|+++++.+.+ ..+..+
T Consensus 345 -----------~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~ 410 (476)
T PLN00028 345 -----------ANSLGAAIVVMILFSIFVQAACG-ATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYS 410 (476)
T ss_pred -----------cchHHHHHHHHHHHHHHHHHhhh-hhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCcc
Confidence 12233333334444444333322 2344445654 478999999998888888888777654 112223
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcc
Q 010323 454 AGIFFFFGGWVVVMTTFVHFFLP 476 (513)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ 476 (513)
+...+.+.+++.+++.+..++.+
T Consensus 411 y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 411 TETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HhhHHHHHHHHHHHHHHHHHhee
Confidence 44444444444444555555543
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=273.66 Aligned_cols=373 Identities=15% Similarity=0.136 Sum_probs=255.2
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhh
Q 010323 68 DTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGI 147 (513)
Q Consensus 68 ~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~ 147 (513)
.|.+.+++|++..+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.
T Consensus 17 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 96 (399)
T TIGR00893 17 APMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAE 96 (399)
T ss_pred HHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhc-ccCC
Q 010323 148 GFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGAL-FLPE 226 (513)
Q Consensus 148 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e 226 (513)
+...+. ...++.|++|+++|++++++......+|..+++.+++.+.+. .+||+.|++.+++.++..+..+ +.||
T Consensus 97 ~~~~~~--~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (399)
T TIGR00893 97 APFFPG--IILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH---FSWQWAFIIEGVLGIIWGVLWLKFIPD 171 (399)
T ss_pred HhhhhH--HHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh---CCchHHHHHHHHHHHHHHHHhhheecC
Confidence 999988 899999999999999999999999999999999998876543 5799999998887776655444 4666
Q ss_pred ChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhH
Q 010323 227 TPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIG 306 (513)
Q Consensus 227 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (513)
+|+... ..+.++.....+.... + .++.+.+++.+.+.++.+ +++.++...+..+..........
T Consensus 172 ~~~~~~--~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 235 (399)
T TIGR00893 172 PPQKAK--WLTEEEKYIVVGGLLA---------E-QQGKGPSTPKKYQIKELL----KDRRVWGLALGQFLVNIGLGFFL 235 (399)
T ss_pred CCCccc--cCCHHHHhhcchhhcc---------c-cccccccCCCccchHHHh----cCHHHHHHHHHHHHHHhHHHHHH
Confidence 553110 0001110000000000 0 000000111112223332 22334444555555555666777
Q ss_pred hcHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHH-hHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010323 307 FYAPVLFRT-IKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLV-GGIQMLAAQVMIGSIMENQLGDQGGFS 384 (513)
Q Consensus 307 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (513)
.+.|.++++ .+.+..+.+ .......+..+++.++.+++.||++||+.... ......++.+......... . .
T Consensus 236 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~ 308 (399)
T TIGR00893 236 TWFPTYLVQERGLSILEAG-FMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT--N----Y 308 (399)
T ss_pred HHHHHHHHHHhcccHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh--c----c
Confidence 788877754 677777777 77788888999999999999999999862111 1111111111111100000 0 0
Q ss_pred cchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc-hhhhHHHHHH
Q 010323 385 KGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK-AGIFFFFGGW 463 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 463 (513)
.+..+.......+...+. +..+....+..|..|++.|+++.|+.+...++++.++|.+.+.+.+..+ +...+...+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~ 386 (399)
T TIGR00893 309 VNIPYAALALVALGFFGL--GAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAA 386 (399)
T ss_pred chhHHHHHHHHHHHHhch--hhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHH
Confidence 112222222222222222 2345667777899999999999999999999999999999999999887 5554444444
Q ss_pred HHHHHHH
Q 010323 464 VVVMTTF 470 (513)
Q Consensus 464 ~~~~~~~ 470 (513)
..+.+.+
T Consensus 387 ~~~~~~~ 393 (399)
T TIGR00893 387 LALIGAL 393 (399)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=264.81 Aligned_cols=381 Identities=13% Similarity=0.091 Sum_probs=270.2
Q ss_pred CcchHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHH
Q 010323 17 GKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIA 96 (513)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~ 96 (513)
.+.+++.++..+.+.++.+...++...+.+. .|.+.+++|+|..+.++..+.+.+++.++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 64 (406)
T PRK15402 5 ARLGRQALLFPLCLVLFEFATYIANDMIQPG--------------------MLAVVEDFNAGAEWVPTSMTAYLAGGMFL 64 (406)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhhhHhcc--------------------hHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4446777777777888888877777766554 23446677889999999999999999999
Q ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHH
Q 010323 97 SLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGY 176 (513)
Q Consensus 97 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 176 (513)
+++.|+++||+|||+++..+..+.+++.+.+.++++++.+++.|+++|++.+...+. ...++.|++|+++|.+..++.
T Consensus 65 ~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~ 142 (406)
T PRK15402 65 QWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAV--GYAAIQESFEEADAIKITALM 142 (406)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHH--HHHHHHHHhChhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988887 888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhh-cccCCChHHHHHhCCcHHHHHHHHHHHhCCCchH
Q 010323 177 ELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGA-LFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVE 255 (513)
Q Consensus 177 ~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (513)
.....+|..++|.+++.+.+. .+||+.|++.++..++..+.. ...||+++.. ++ ++
T Consensus 143 ~~~~~~~~~~g~~i~~~l~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~--------------- 199 (406)
T PRK15402 143 ANVALLAPLLGPLVGAALIHV---LPWRGMFVLFAALAALSFFGLWRAMPETAGRV---GE--KL--------------- 199 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHc---cCccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cc--cc---------------
Confidence 888889999999998877653 479999999888777665544 3467764210 00 00
Q ss_pred HHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHH-HhcCCCchhHHHHHHHHHHHH
Q 010323 256 AEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLF-RTIKLSESTSLLMSAVVTGGI 334 (513)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~ 334 (513)
+.++ ...++++.++++ .++...+..+...........+.|.++ ++.+.++.+.+ .......++
T Consensus 200 -~~~~----------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g-~~~~~~~~~ 263 (406)
T PRK15402 200 -SLKE----------LGRDYKLVLKNR----RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYG-LLQVPVFGA 263 (406)
T ss_pred -cHHH----------HHHHHHHHHcCc----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHH-HHHHHHHHH
Confidence 0000 001122333222 222222222222222233444566665 45788877776 556666678
Q ss_pred HHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhcccccccccee
Q 010323 335 GTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVP 414 (513)
Q Consensus 335 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (513)
.+++.++.+++.||+++|+.+..+.....++..++...... ...+.+......++.+.+.+....+. ....
T Consensus 264 ~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~g~g~~~~~~~~-~~~~ 334 (406)
T PRK15402 264 LIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVI--------SSHAYLWLTAGLSLYAFGIGLANAGL-YRLT 334 (406)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHc--------ccccHHHHHHHHHHHHHHHHHHhhhH-HHHH
Confidence 88999999999999999999888877776666655543210 11233344455566666655544333 2222
Q ss_pred cccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHHHHHHH
Q 010323 415 SEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMT 468 (513)
Q Consensus 415 ~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (513)
...+++.+|++.+..+....++..+++.+.+.+.+..+...+....+++.+..
T Consensus 335 -~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 335 -LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred -hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 23345889999999999999999999999999988877555444444444433
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=267.21 Aligned_cols=390 Identities=17% Similarity=0.174 Sum_probs=281.4
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhh
Q 010323 73 NYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQ 152 (513)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~ 152 (513)
+.++.+.....+..+++++|..+|++++|+++||+|||++++.++++..++.+++++++|++.+++.|+++|++.+....
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCChHHHH
Q 010323 153 ASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSII 232 (513)
Q Consensus 153 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~ 232 (513)
. ...+++|++++++|+.+..+ ......+..+++..++++.. +||+.+++..+++++.++..++.||+|||+.
T Consensus 191 ~--~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~ 262 (521)
T KOG0255|consen 191 V--GFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----DWRWLFWIISIPSGLFLLLWFLPPESPRWLL 262 (521)
T ss_pred H--hHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHccCcChHHHH
Confidence 9 99999999999999999999 65666666666666555544 6999999999999888777666779999999
Q ss_pred HhCCcHHHHHHHHHHHhCCC----chHHHHHHHHHHH--H-hhhhcCCcchhhcccC-chhHHHHHHHHHHHhhhcchhh
Q 010323 233 QRSNDLQRAKQMLQRIRGTD----DVEAEFDDLIKAS--S-IAKTVNHPFKKIIQRK-YRPQLVMAILIPFFLQVTGINV 304 (513)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 304 (513)
.+++ .+++.+.+++..+.+ ..+...+...... . ...+++..+.++++.+ .+++..... +..+.....++.
T Consensus 263 ~~g~-~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~-~~~~~~~~~y~g 340 (521)
T KOG0255|consen 263 SKGR-IDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLL-FIWFVFSLVYYG 340 (521)
T ss_pred HcCc-hHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHH-HHHHHHhHHHHh
Confidence 9999 788888888876433 1111111111111 1 1112234466666554 233333322 222222112221
Q ss_pred hHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010323 305 IGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFS 384 (513)
Q Consensus 305 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (513)
.+......|.+.. ......+.....+....+...|+.|||.....+..+..++.+...+...
T Consensus 341 ----l~~~~~~lg~~~~----~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~---------- 402 (521)
T KOG0255|consen 341 ----LSLNVSGLGGNIY----LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD---------- 402 (521)
T ss_pred ----hhhhhhhcCchHH----HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc----------
Confidence 2222233333322 3344444577888888899999999999999999999999988887741
Q ss_pred cchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHHH
Q 010323 385 KGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWV 464 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (513)
....+...+...+..++.+.++... +.+.+|++|+..|..+.+..+....++++++|.+...............++...
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~ 481 (521)
T KOG0255|consen 403 DLGGWLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLA 481 (521)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Confidence 1111244445555555555565555 777799999999999999999999999999988876554422222222245666
Q ss_pred HHHHHHHHhhcccCCCCCHHHHHHHhc
Q 010323 465 VVMTTFVHFFLPETKNVPIEQMDEVWG 491 (513)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (513)
.+.+.+...++||++++.+.+..++.+
T Consensus 482 ~l~~~~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 482 LLLGLLSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred HHHHHHHHhcCcccCCCCCchhHHHHH
Confidence 677777778999999988766555444
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=257.31 Aligned_cols=337 Identities=14% Similarity=0.151 Sum_probs=237.7
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhh---h-----chhHHHHHHHHHH
Q 010323 71 ISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGG---A-----ALNIYMLIFGRVL 142 (513)
Q Consensus 71 i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-----~~~~~~l~~~r~l 142 (513)
+++++|+|.++.|++.+++.+++.++++++|+++||+||||++..+.+...++.+... + .++++.+++.|++
T Consensus 42 l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 121 (392)
T PRK12382 42 VHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLI 121 (392)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHH
Confidence 4667889999999999999999999999999999999999999999888776654322 1 3578999999999
Q ss_pred HHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhc
Q 010323 143 LGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGAL 222 (513)
Q Consensus 143 ~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 222 (513)
+|++.+...+. ..+++.|++|+++|++++++.+.+...|..++|.+++.+.+. .|||+.+.+..+..++......
T Consensus 122 ~G~~~~~~~~~--~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~ 196 (392)
T PRK12382 122 LGFGESQLLTG--ALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH---FGFAALALTTMVLPLLAWAFNG 196 (392)
T ss_pred HHHHHHHHHHH--HHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHH
Confidence 99999988887 778889999999999999999999999999999998877553 5799887766554443333222
Q ss_pred ccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcch
Q 010323 223 FLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGI 302 (513)
Q Consensus 223 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (513)
..||.++. ++ ++.+.++..+...++. .. ........
T Consensus 197 ~~~~~~~~----~~----------------------------------~~~~~~~~~~~~~~~~-~~-----~~l~~~~~ 232 (392)
T PRK12382 197 TVRKVPAH----AG----------------------------------ERPSLWSVVGLIWKPG-LG-----LALQGVGF 232 (392)
T ss_pred hccCCCCC----cc----------------------------------cCchHHHHHHHHHHhH-HH-----HHHHHHHH
Confidence 23433210 00 0001111111111111 11 11111223
Q ss_pred hhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCC
Q 010323 303 NVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGG 382 (513)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (513)
.....+.+.++++.+.+. .. .......++.++++++.+++.||+++|+.+..+..+..++.+++...
T Consensus 233 ~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---------- 299 (392)
T PRK12382 233 AVIGTFVSLYFASKGWAM--AG-FTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA---------- 299 (392)
T ss_pred hHHHHHHHHHHHhcCCch--hH-HHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc----------
Confidence 344556677777766653 33 44556677788899999999999999999888877777766554432
Q ss_pred CCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHH
Q 010323 383 FSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGG 462 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (513)
++.+.......+.+.+.+...+.. .....|.+|++.|+++.|+.+....++..++|.+.+.+.++.++...+.+.+
T Consensus 300 ---~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~ 375 (392)
T PRK12382 300 ---PTAWVALAGAALTGAGCSLIFPAL-GVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGA 375 (392)
T ss_pred ---ccHHHHHHHHHHHHHHHHhHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 234444455555665555444333 3444688999999999999999999999999999999999988766555555
Q ss_pred HHHHHHHHHHh
Q 010323 463 WVVVMTTFVHF 473 (513)
Q Consensus 463 ~~~~~~~~~~~ 473 (513)
.+.+.+.+..+
T Consensus 376 ~~~~~~~~~~~ 386 (392)
T PRK12382 376 ISAVLGIIVTI 386 (392)
T ss_pred HHHHHHHHHHH
Confidence 55555444433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=270.98 Aligned_cols=358 Identities=13% Similarity=0.034 Sum_probs=257.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhh-----chhHHHHHHHHHHHHhhhhh
Q 010323 75 CKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGA-----ALNIYMLIFGRVLLGVGIGF 149 (513)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~Gi~~~~ 149 (513)
++.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+..+. .++++.+++.|++.|++.+.
T Consensus 47 ~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 126 (417)
T PRK10489 47 MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSL 126 (417)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 4558899999999999999999999999999999999999888877776655432 56789999999999999888
Q ss_pred hhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCChH
Q 010323 150 ANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPN 229 (513)
Q Consensus 150 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~ 229 (513)
..+. ..+++.|+.|+++|+++.++......+|..+|+.+++.+.+. .+|++.|++.++..++..+..+.+||+++
T Consensus 127 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 201 (417)
T PRK10489 127 GVTA--LLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA---GGVAWNYGLAAAGTFITLLPLLRLPALPP 201 (417)
T ss_pred HHHH--HhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 8887 888999999999999999999999999999999999877653 46999998888777766666666777542
Q ss_pred HHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcH
Q 010323 230 SIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYA 309 (513)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (513)
....+++ ..++. +..++..++++ .+....+..++... ......+.
T Consensus 202 ~~~~~~~--------------------~~~~~----------~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~ 246 (417)
T PRK10489 202 PPQPREH--------------------PLRSL----------LAGFRFLLASP----VVGGIALLGGLLTM-ASAVRVLY 246 (417)
T ss_pred CCccccc--------------------chHHH----------HHHHHHHHcCh----HHHHHHHHHHHHHH-HHhHHHhh
Confidence 1000000 00000 01122222222 11111111111111 23455677
Q ss_pred HHHHHh-cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchh
Q 010323 310 PVLFRT-IKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNA 388 (513)
Q Consensus 310 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (513)
|.+.++ .|.++...+ .......++.+++.++.+++.||.++++.+..+..+..++.+.+... ++.
T Consensus 247 p~~~~~~~g~~~~~~g-~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~ 312 (417)
T PRK10489 247 PALADEVWQMGAAQIG-LLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-------------PMW 312 (417)
T ss_pred HHHHHhccCCChhHhH-HHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-------------chH
Confidence 888877 788887777 77778889999999999999999877777777766666655544322 333
Q ss_pred HHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcch-hhhHHHHHHHHHH
Q 010323 389 YLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKA-GIFFFFGGWVVVM 467 (513)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 467 (513)
+...+..++.+.+.+.. .+....++.|..|++.||++.|+.+...++|..+++.+.|.+.+..+. ..+...+++..+.
T Consensus 313 ~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~ 391 (417)
T PRK10489 313 ILAVLCLALFGYLSAIS-SLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLII 391 (417)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Confidence 44444555555544333 244455668999999999999999999999999999999999999885 4455566666666
Q ss_pred HHHHHhhcccCCCCCHHHHH
Q 010323 468 TTFVHFFLPETKNVPIEQMD 487 (513)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~ 487 (513)
+++.....++.++++.+|.+
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~ 411 (417)
T PRK10489 392 GVLLLLVLGELRRFRQTPPE 411 (417)
T ss_pred HHHHHHhccccccccccccc
Confidence 77777777877766655443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=265.05 Aligned_cols=380 Identities=14% Similarity=0.124 Sum_probs=263.4
Q ss_pred HHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q 010323 30 AATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGR 109 (513)
Q Consensus 30 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Gr 109 (513)
++++.+...++...+++. .|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+||
T Consensus 15 ~~~~~~~~~~~~~~~~~~--------------------~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 74 (471)
T PRK10504 15 VAFGFFMQSLDTTIVNTA--------------------LPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGV 74 (471)
T ss_pred HHHHHHHHHHhHHHHHHH--------------------HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 345567777777766544 234456678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHH
Q 010323 110 RASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASL 189 (513)
Q Consensus 110 r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 189 (513)
|++++.+..+.+++.+++.++++++.+++.|+++|++.+...+. ...++.|++|+++|+++.++.....++|..++|.
T Consensus 75 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 152 (471)
T PRK10504 75 RNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPV--GRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPA 152 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999988 8889999999999999999999999999999999
Q ss_pred HHhhhcccCCccchHHHHHhhHHHHHHHHHhhcc-cCCChHHHHHhCCcHHHHHHHHH---------HHhCCCc---hHH
Q 010323 190 INYGTQKIKGGWGWRISLAMAAAPALILTLGALF-LPETPNSIIQRSNDLQRAKQMLQ---------RIRGTDD---VEA 256 (513)
Q Consensus 190 l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~---------~~~~~~~---~~~ 256 (513)
+++.+.+. .+||+.|++......+..+.... .|+.+.. +.+ .+....... ...+.+. ...
T Consensus 153 ~~g~l~~~---~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~---~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (471)
T PRK10504 153 LGGLLVEY---ASWHWIFLINIPVGIIGAIATLMLMPNYTMQ---TRR-FDLSGFLLLAVGMATLTLALDGSKGLGLSPL 225 (471)
T ss_pred HHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHHhCCCcccc---CCC-CChHHHHHHHHHHHHHHHHHhcCCcCCcchH
Confidence 98887654 57999999987766655544433 4544311 111 111110000 0001000 000
Q ss_pred HHHH--------HHHHHHhhhhcCCcc--hhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHh-cCCCchhHHH
Q 010323 257 EFDD--------LIKASSIAKTVNHPF--KKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRT-IKLSESTSLL 325 (513)
Q Consensus 257 ~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~ 325 (513)
.... ......++++.+.+. .++++ ++.+.......++..........+.|++++. .|.++...+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g- 300 (471)
T PRK10504 226 AIAGLVAVGVVALLLYLLHARNNNRALFSLKLFR----TRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAG- 300 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhc----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-
Confidence 0000 000000011111111 12222 2233333444444444455566778888875 788887777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhcc
Q 010323 326 MSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVS 405 (513)
Q Consensus 326 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (513)
+...+..++.+++.++.+++.||+++|+.+..+..+..+...++.... ...+.+.......+.+.+.+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~ 370 (471)
T PRK10504 301 LMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA----------LLGWYYLLPFVLFLQGMVNSTR 370 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc----------ccccHHHHHHHHHHHHHHHHHH
Confidence 777788888888889999999999999999888877777666554421 1122222233344444555544
Q ss_pred ccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcch
Q 010323 406 WGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKA 454 (513)
Q Consensus 406 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (513)
.++. ..+..+..|++.++.+.|+.++...+|..+++.+.+.+.+..++
T Consensus 371 ~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 371 FSSM-NTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHH-HHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444 34446888999999999999999999999999999999887654
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=241.38 Aligned_cols=382 Identities=16% Similarity=0.152 Sum_probs=283.9
Q ss_pred CcchHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHH
Q 010323 17 GKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIA 96 (513)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~ 96 (513)
++..++.+.+.......+|..|+-.+.+ .+.|++|+|+|+.|.+++.++..+..++.
T Consensus 9 k~~~~~~L~~S~~af~v~F~VW~l~s~l-----------------------~~~i~~~~~LS~~q~~ll~aiPil~Gall 65 (417)
T COG2223 9 KRIARRNLWLSTLAFDVGFMVWTLFSPL-----------------------GVFIKSDFGLSEGQKGLLVAIPILVGALL 65 (417)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH-----------------------HhhhccccCCCHHHHHHHHHHHHHHhHHH
Confidence 3444555555555555556666655443 45567899999999999999999999999
Q ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHH---HHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchh
Q 010323 97 SLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIY---MLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFN 173 (513)
Q Consensus 97 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~---~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~ 173 (513)
.++.|.+.||||.|++..+++++..+-++..+++.+.+ ++++.+.+.|++.+ .+.. ...++++|+|||++|.++
T Consensus 66 Rl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav--~m~~~s~~fP~~~qG~Al 142 (417)
T COG2223 66 RLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAV--GMPNASFFFPKEKQGLAL 142 (417)
T ss_pred HHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccc-eehc--ccccccccCChhhhhHHH
Confidence 99999999999999999999999999999999986554 99999999999754 6666 888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcccCCccc---hHHHHHhhHHHHHHHHHhhcc-cCCChHHHHHhCCcHHHHHHHHHHHh
Q 010323 174 IGYELCTAIGILAASLINYGTQKIKGGWG---WRISLAMAAAPALILTLGALF-LPETPNSIIQRSNDLQRAKQMLQRIR 249 (513)
Q Consensus 174 ~~~~~~~~~G~~~~~~l~~~~~~~~~~~~---wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~ 249 (513)
|+.. ..++|..+..+++..+... .+ ||....+..+..++..+..++ ..|.|......++
T Consensus 143 GI~g-~GN~G~av~q~~~P~v~~~---~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~------------- 205 (417)
T COG2223 143 GIAG-AGNLGVAVAQLVAPLVAVA---FGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKP------------- 205 (417)
T ss_pred HHhc-cccccHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccc-------------
Confidence 9999 8888888877776665544 35 999999988887776655544 7777642111110
Q ss_pred CCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHH-hcCCCchhHHHHHH
Q 010323 250 GTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFR-TIKLSESTSLLMSA 328 (513)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~ 328 (513)
.. + ..++...+++..|.+.+.++..+.++..+..++|.|++ +++.++.+++ ...
T Consensus 206 ---------------------~~-~--~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag-~~a 260 (417)
T COG2223 206 ---------------------QL-P--AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAG-LIA 260 (417)
T ss_pred ---------------------cc-h--hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHH-HHH
Confidence 00 0 11112222344556666777777888888999998875 5888888888 788
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccc
Q 010323 329 VVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGP 408 (513)
Q Consensus 329 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (513)
....+.+.+.++.+|+++||+|.+|.....+..++++...+.+.... .. ...+.............+.+.+...
T Consensus 261 ~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~----~~--~~~~~~~~~~~~l~l~~~~G~GnGs 334 (417)
T COG2223 261 FLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTG----FG--HGGSFVVFVAVFLALFVFAGLGNGS 334 (417)
T ss_pred HHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccc----cc--cCcchHHHHHHHHHHHHHhccCcch
Confidence 88889999999999999999999999999999888888877664210 00 0133444445455555666666544
Q ss_pred cccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc-hh-hhHHHHHHHHHHHHHHHhh
Q 010323 409 LGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK-AG-IFFFFGGWVVVMTTFVHFF 474 (513)
Q Consensus 409 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ 474 (513)
. +-++...+| ++.|.+.|+....+.+|++..|...+...+..+ +. .++++..+..++....+..
T Consensus 335 v-fk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 335 V-FKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred h-eeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 555567777 567899999999999999999999999999998 33 3445555545544444443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=272.95 Aligned_cols=383 Identities=17% Similarity=0.145 Sum_probs=273.5
Q ss_pred HHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 010323 27 CIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRA 106 (513)
Q Consensus 27 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr 106 (513)
...++++.+...+|....+.. .|.+.+++|.+..+.+++.+.+.++..++.++.|+++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~--------------------~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr 63 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVA--------------------IPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR 63 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445567778888888877655 455677788899999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHH
Q 010323 107 FGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILA 186 (513)
Q Consensus 107 ~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 186 (513)
+|||+++..+.++..++.+++++++|++.+++.|+++|++.+...+. ..+++.|++|+++|+++.+++..+..+|..+
T Consensus 64 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~--~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~ 141 (485)
T TIGR00711 64 FGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPL--SFSTLLNIYPPEKRGRAMAIWGLTVLVAPAL 141 (485)
T ss_pred hCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHCCHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999988 8999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhh-cccCCChHHHHHhCCcHHHHHHH------------HHHHhCCCc
Q 010323 187 ASLINYGTQKIKGGWGWRISLAMAAAPALILTLGA-LFLPETPNSIIQRSNDLQRAKQM------------LQRIRGTDD 253 (513)
Q Consensus 187 ~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~------------~~~~~~~~~ 253 (513)
+|.+++.+.+. .+||+.|++.++++++..+.. +++||+++. +.++.|..... ..+-...+.
T Consensus 142 g~~~~~~l~~~---~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~ 215 (485)
T TIGR00711 142 GPTLGGWIIEN---YHWRWIFLINVPIGIIVVVVAFFILPRDKPA---ASENFDFLGLLLLSVGLGSLLYGLSEGPERGW 215 (485)
T ss_pred hhccHhHhccC---cCceehhhhhhHHHHHHHHHHHHHcCCcccc---ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 99998877653 679999999888777655444 346665421 11111111000 000000000
Q ss_pred h-HHHHHHH--------HHHHHhhhhcCCcch--hhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHh-cCCCch
Q 010323 254 V-EAEFDDL--------IKASSIAKTVNHPFK--KIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRT-IKLSES 321 (513)
Q Consensus 254 ~-~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~ 321 (513)
. +.+.... ......+.+.+++.. +.++++ .+....+..+.....+.....+.|.++++ .|.++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~ 291 (485)
T TIGR00711 216 FDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYR----NFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTAL 291 (485)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 0 0000000 000000111122221 233322 22222333333334445566778888765 788888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHh
Q 010323 322 TSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAG 401 (513)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (513)
+.+ ....+..++.+++.++.|++.||++||+.+..+..+..++...+.+... ++.+.+.......+.+++
T Consensus 292 ~~g-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~g~g 361 (485)
T TIGR00711 292 QAG-LHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT---------PDTPFLAIALPQFIRGFG 361 (485)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC---------CCCCHHHHHHHHHHHHHH
Confidence 888 7888888999999999999999999999988887777776665542210 112334444455666666
Q ss_pred hhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhc
Q 010323 402 FAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHF 452 (513)
Q Consensus 402 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 452 (513)
.+....+..... .+..|++.++++.|+.+..+.+|+.+++.+.+.+.++.
T Consensus 362 ~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 362 MGCFFMPLTTIA-LSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHH-HhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555554444 57789999999999999999999999999999988764
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=257.34 Aligned_cols=371 Identities=15% Similarity=0.174 Sum_probs=257.4
Q ss_pred HHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHh
Q 010323 21 SFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFA 100 (513)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~ 100 (513)
...++.+.++++...++..|...+..+ .+.+++.||++++..|++++.+.+.+.+++|++
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv--------------------~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~ 88 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGV--------------------LKEVQTYFNISDSELGLLQTVFIVVFMIASPLF 88 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhh--------------------hHHHHHhcCCCchhccchhHHHHHHHHHHHHHH
Confidence 344556666678889999999886655 456688889999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHH
Q 010323 101 SSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCT 180 (513)
Q Consensus 101 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 180 (513)
|+++|||.||+++.+|..+|.++.+.++++..||+++++|.+.|+|.+...+. ++++++|.+|.++|++++++++.+.
T Consensus 89 gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~i--a~s~IaD~f~~~~Rs~~~~ify~~i 166 (493)
T KOG1330|consen 89 GYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPI--APSLIADSFPDDKRSRVLGIFYFAI 166 (493)
T ss_pred HHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhccc--chhHhhhcCcchhhhHHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcc-cCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHH
Q 010323 181 AIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALF-LPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFD 259 (513)
Q Consensus 181 ~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (513)
.+|..+|.+.+..+..... .|||.|+..+++++++.++.++ .+|++|...++.+ +.+
T Consensus 167 pvGsglG~vvgs~va~~~~--~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~-------------~~~------- 224 (493)
T KOG1330|consen 167 PVGSGLGYVVGSVVASLTF--WWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVD-------------GEN------- 224 (493)
T ss_pred ccccceeEEeeeeeccCcc--ceEEEEEeehHHHHHHHHHHHhhccCcccccccccc-------------cCC-------
Confidence 9999999999888877654 3999999999999998766554 6666532111100 000
Q ss_pred HHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHH----HhcCCCchhHHHHHHHHHHHHH
Q 010323 260 DLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLF----RTIKLSESTSLLMSAVVTGGIG 335 (513)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~ 335 (513)
+..+.....++|+. ...+.+.+....+...........+.+|.|.+. +-.|.+..... ....+...++
T Consensus 225 ------~~~~~~ts~~kDl~-~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~-ifg~vt~~~G 296 (493)
T KOG1330|consen 225 ------KMVKPFTSVWKDLK-VLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATL-IFGGVTCAGG 296 (493)
T ss_pred ------cCCCCccchHHHHH-HHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccch-hhhhHHHhhc
Confidence 00011111223322 111212333333333333344455566666554 33566666666 7777888899
Q ss_pred HHHHHHHHHhhhccCcc-------hHH-HHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhcccc
Q 010323 336 TLSTIISMILVDKLGRK-------VLF-LVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWG 407 (513)
Q Consensus 336 ~~~~~~~g~l~d~~g~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (513)
.+|.+++|.++||+.|+ +.- ..+......+...+...... ...+.+..++++++........++
T Consensus 297 ~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~--------~~~s~~~~~il~~~g~~~~~~~~a 368 (493)
T KOG1330|consen 297 SLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAF--------TSSSMIFGLILFLVGETISWFNWA 368 (493)
T ss_pred hhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999995321 111 11111111111111111100 223333333333333333334444
Q ss_pred ccccceecccCChhhhhhHhHHHHHHHHHHHHH-HHHHhHHHHHhc
Q 010323 408 PLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFL-IAQTFLAMLCHF 452 (513)
Q Consensus 408 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~ 452 (513)
+..... .|+.|++.|.++.++...+..+.+-. +|++.|.+.|+.
T Consensus 369 ~n~~i~-l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 369 TNNPIF-LEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred ccccee-eEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 443444 69999999999999998887765555 454999998875
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=262.59 Aligned_cols=403 Identities=15% Similarity=0.016 Sum_probs=254.7
Q ss_pred HHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhHHH
Q 010323 24 VLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSV 103 (513)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l 103 (513)
+..+....++....+.+...+... .|.+++ +|++.++.+++.+.+.++..+++++.|++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l 84 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALA--------------------MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSV 84 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhh--------------------hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchh
Confidence 444455555556666665544433 223333 47899999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhc----hhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHH
Q 010323 104 TRAFGRRASILVGGAAFLAGSALGGAA----LNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELC 179 (513)
Q Consensus 104 ~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 179 (513)
+||+|||+++..+.++.+++.++.++. ++++.+.+.|++.|++.+...+. ...++.|++|+++|++++++.+.+
T Consensus 85 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~--~~~~i~~~~~~~~rg~~~~~~~~~ 162 (438)
T TIGR00712 85 SDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPP--CGRTMVHWWSQSERGTIVSIWNCA 162 (438)
T ss_pred hhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHH--HHHHHHHhcCcccchhHHHHHHHH
Confidence 999999999999999999998887764 46778889999999999988887 778899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHH-hhcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHH
Q 010323 180 TAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTL-GALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEF 258 (513)
Q Consensus 180 ~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (513)
..+|..+++.+.+..... ..+||..|++.++++++..+ ..+++||+|+....++. ++. +.+...+ .
T Consensus 163 ~~~g~~~~~~l~~~~~~~--~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~-~- 229 (438)
T TIGR00712 163 HNIGGGIPPLLVLLGMAW--FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPI--EEY-------RNDYPDD-Y- 229 (438)
T ss_pred HHhHhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCc--hhc-------ccccccc-c-
Confidence 999999988775543221 14799999998888777554 44557887753210000 000 0000000 0
Q ss_pred HHHHHHHHhhhhcCCcchhhc-ccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHh-cCCCchhHHHHHHHHHHHHHH
Q 010323 259 DDLIKASSIAKTVNHPFKKII-QRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRT-IKLSESTSLLMSAVVTGGIGT 336 (513)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~ 336 (513)
. + +.+.+.+.++.+ +...+++.++...+..++.....+....|.|.++++ .|+++.+++ ....+..+..+
T Consensus 230 ~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~-~~~~~~~~~~~ 301 (438)
T TIGR00712 230 N------E-KAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSS-WAYFLYEYAGI 301 (438)
T ss_pred c------c-ccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHH-HHHHHHHHHHH
Confidence 0 0 000000111111 011222333334333334444445667788888876 688887777 77778888999
Q ss_pred HHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecc
Q 010323 337 LSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSE 416 (513)
Q Consensus 337 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (513)
++.++.+++.||+++++....+................. +..+.+......+..+.+.. +..........|
T Consensus 302 ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~ 372 (438)
T TIGR00712 302 PGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMN--------PAGNPLVDMICMIVIGFLIY-GPVMLIGLHALE 372 (438)
T ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHHHc-cHHHHHHHHHHH
Confidence 999999999999964432222222222111111111100 11122222222222222211 111111234468
Q ss_pred cCChhhhhhHhHHHHHHHHHHH-HHHHHHhHHHHHhcchhhh-HHHHHHHHHHHHHHHhhcccCC
Q 010323 417 IFPLEIRSAGQSINVAVGFLFT-FLIAQTFLAMLCHFKAGIF-FFFGGWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 417 ~~p~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 479 (513)
.+|++.|+++.|+.+..+++++ +++|.+.|.+.|+.++... ....++..+..+......+|+|
T Consensus 373 ~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 373 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999988875 6799999999998885544 3444444455555555555544
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=251.89 Aligned_cols=369 Identities=12% Similarity=0.042 Sum_probs=247.0
Q ss_pred HHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhh
Q 010323 26 SCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTR 105 (513)
Q Consensus 26 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d 105 (513)
.+..+.+..+....+...+.+. .|.+.+++|.+.++.++..+++.+++.++++++|+++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~p~--------------------l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~d 76 (413)
T PRK15403 17 FPMALILYDFAAYLTTDLIQPG--------------------IINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSD 76 (413)
T ss_pred HHHHHHHHHHHHHHHHHhhccC--------------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3333445556566666555544 34567788899999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHH
Q 010323 106 AFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGIL 185 (513)
Q Consensus 106 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 185 (513)
|+|||++++.+.++++++++++++++|++.++++|+++|++.+...+. ...++.|++|+++|++++++......+|..
T Consensus 77 r~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (413)
T PRK15403 77 RIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATV--GYVTVQEAFGQTKGIKLMAIITSIVLVAPI 154 (413)
T ss_pred HcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998876666 677889999999999999999999999999
Q ss_pred HHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHh-hcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 010323 186 AASLINYGTQKIKGGWGWRISLAMAAAPALILTLG-ALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKA 264 (513)
Q Consensus 186 ~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (513)
++|.+++.+.+. .|||+.|++.++..++..+. .+++||+++. ++++.+ .
T Consensus 155 ~g~~lg~~l~~~---~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~~--------------~---------- 204 (413)
T PRK15403 155 IGPLSGAALMHF---VHWKVLFAIIAVMGLIAFVGLLLAMPETVKR---GAVPFS--------------A---------- 204 (413)
T ss_pred HHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCCccc---cCCCCC--------------h----------
Confidence 999999877643 58999999998887776654 3457887531 000000 0
Q ss_pred HHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 010323 265 SSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRT-IKLSESTSLLMSAVVTGGIGTLSTIISM 343 (513)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g 343 (513)
++..+++++.++ ++.++...+..............+.|.++++ .|.++.+.+ +.......+.+++..+.+
T Consensus 205 ----~~~~~~~~~ll~----~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~g-l~~~~~~~~~~i~~~l~~ 275 (413)
T PRK15403 205 ----KSVLRDFRNVFR----NRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFA-WTQVPVFGAVIVANAIVA 275 (413)
T ss_pred ----HHHHHHHHHHHc----CHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 000011223332 2334434444444444445566677877765 578888777 666667777788777777
Q ss_pred HhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhh
Q 010323 344 ILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIR 423 (513)
Q Consensus 344 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 423 (513)
++.++..+++.......+..++..++...... ..++.+......++++.+.+...+.... . +..-....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~--------~~~~~~~~~~~~~l~~~G~~~~~p~~~~-~-al~~~~~~~ 345 (413)
T PRK15403 276 RFVKDPTEPRFIWRAVPIQLVGLALLIVGNLL--------WPHVWLWSVLGTSLYAFGIGLIFPTLFR-F-TLFSNNLPK 345 (413)
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHHHHHHHH--------ccccHHHHHHHHHHHHHHHHHHhHHHHH-H-HhccCCCCC
Confidence 76655444444332222223332222211100 0122223345555666666555433321 1 111112236
Q ss_pred hhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHHHH
Q 010323 424 SAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVV 465 (513)
Q Consensus 424 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (513)
|++.++.+.....+...++...+++.++.....+....+++.
T Consensus 346 G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 387 (413)
T PRK15403 346 GTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAG 387 (413)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 889999999998889999999888877754444444443333
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=255.04 Aligned_cols=329 Identities=13% Similarity=0.035 Sum_probs=244.5
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhch-----hHHHHHHHHHHHHhhhh
Q 010323 74 YCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAAL-----NIYMLIFGRVLLGVGIG 148 (513)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~Gi~~~ 148 (513)
+++.+..+.+++.+++.++..++++++|+++||+|||+++..+.++..++.++..+++ +++.+++.|++.|++.+
T Consensus 28 ~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 107 (365)
T TIGR00900 28 AGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQA 107 (365)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3466899999999999999999999999999999999999999999999998888887 99999999999999999
Q ss_pred hhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhccc--CC
Q 010323 149 FANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFL--PE 226 (513)
Q Consensus 149 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~--~e 226 (513)
...+. ..+++.|++|+++|++++++...+..+|..+++.+++.+.+. .+||+.|++.++..++..+..+.+ ||
T Consensus 108 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (365)
T TIGR00900 108 FFTPA--YQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT---LGIKWAIWVDAVGFAISALLIVSVRIPE 182 (365)
T ss_pred HHHHH--HHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99998 899999999999999999999999999999999998887654 579999998877666555444333 33
Q ss_pred ChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhH
Q 010323 227 TPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIG 306 (513)
Q Consensus 227 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (513)
+++. ++++.++ .. .++.+..+++.++++. ++......+..........
T Consensus 183 ~~~~---~~~~~~~---------------~~----------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 230 (365)
T TIGR00900 183 LAAS---EIQALSN---------------AV----------LRDTREGIKFVLKNPL----LRTLLLLALLFNLVFAPAI 230 (365)
T ss_pred CCCc---cccccch---------------hH----------HHHHHhHHHHHHcCcH----HHHHHHHHHHHHHHHHHHH
Confidence 3210 0000000 00 0000112233333322 2222222222222223333
Q ss_pred -hcHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010323 307 -FYAPVLFRT-IKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFS 384 (513)
Q Consensus 307 -~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (513)
.+.|.+.++ .+.+..+.+ .......++.+++.++.+++.||.+||+.+..+..+..++...+... +
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 298 (365)
T TIGR00900 231 VALFPYVQSKYLGRGSTHYG-WVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT-----------P 298 (365)
T ss_pred HHHhHHHHHHHhCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh-----------c
Confidence 677888775 788888777 77888889999999999999999999998887766666655554443 1
Q ss_pred cchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc
Q 010323 385 KGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK 453 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (513)
++.+...+..++.+++.+... +....+..|..|++.|+++.|+.+...+++..+++.+.|.+.|+.|
T Consensus 299 -~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 299 -PNFPLFLVLWFAIGVGYGPIN-VPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred -hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 124555556666666665553 4445566899999999999999999999999999999999988754
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-32 Score=262.33 Aligned_cols=355 Identities=14% Similarity=0.088 Sum_probs=240.4
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhh
Q 010323 68 DTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGI 147 (513)
Q Consensus 68 ~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~ 147 (513)
.|.+.+++|++..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.
T Consensus 18 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 97 (379)
T TIGR00881 18 MPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQ 97 (379)
T ss_pred hHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 45567778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHH-HHHhhhcccCCccchHHHHHhhHHHHHHHHH-hhcccC
Q 010323 148 GFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAAS-LINYGTQKIKGGWGWRISLAMAAAPALILTL-GALFLP 225 (513)
Q Consensus 148 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~-~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~ 225 (513)
+...+. ..+++.|++|+++|++++++...+..+|..+++ .++..+... .+||+.|++.+++.++..+ ..++.|
T Consensus 98 ~~~~~~--~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T TIGR00881 98 GMGWPP--CGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL---YSWHWVFIVPGIIAIIVSLICFLLLR 172 (379)
T ss_pred cccCCc--hHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHheeeC
Confidence 999988 889999999999999999999999999999999 465544432 5799999988877766544 444577
Q ss_pred CChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhh
Q 010323 226 ETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVI 305 (513)
Q Consensus 226 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (513)
|+|+....++. ++. ...+. + + +.+.+++.....+...+...+++.++...+..+.........
T Consensus 173 ~~~~~~~~~~~--~~~-------~~~~~-~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (379)
T TIGR00881 173 DSPQSCGLPPA--EEM-------PNEEP-D----G---DAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGI 235 (379)
T ss_pred CCccccccCcc--ccC-------ccccc-c----c---ccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 76542111100 000 00000 0 0 000000000111111111122233444444444444445566
Q ss_pred HhcHHHHHH-hcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCc-chHHHHhHHHHHHHHHHHHHHHHhhcCCCCCC
Q 010323 306 GFYAPVLFR-TIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGR-KVLFLVGGIQMLAAQVMIGSIMENQLGDQGGF 383 (513)
Q Consensus 306 ~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (513)
..+.|.+++ ..|.+..+.+ .......++.+++.++.+++.||..+ |+.... ..........+......
T Consensus 236 ~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------- 305 (379)
T TIGR00881 236 LDWSPLYLTQEKGFSKEKAS-WAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLA-VFFMALIIVSLLVYWLN-------- 305 (379)
T ss_pred HHHHHHHHHHHhCCCHHHHH-HHHHHHHHHcchhHHHHHHHHHHHcCCcchHHH-HHHHHHHHHHHHHHhcC--------
Confidence 677777775 4688888877 77888889999999999999998643 332222 11111111111111100
Q ss_pred CcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchh
Q 010323 384 SKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAG 455 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (513)
+..+.+.........+.... ...+....+..|..|++.|+++.|+.+....+++.++|.+.|.+.++.++.
T Consensus 306 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 376 (379)
T TIGR00881 306 PAANPLMDLICLFALGFLVY-GPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA 376 (379)
T ss_pred cchhHHHHHHHHHHHHHHHh-hhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence 11222333333333333222 222333455679999999999999999999999999999999999988754
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-30 Score=253.40 Aligned_cols=336 Identities=16% Similarity=0.099 Sum_probs=231.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhccccccee
Q 010323 81 LLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYL 160 (513)
Q Consensus 81 ~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i 160 (513)
+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+ ..+. ...++
T Consensus 55 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~--~~~~~ 131 (408)
T PRK09874 55 WSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPN--ANALI 131 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHh--HHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999865 4566 67788
Q ss_pred eccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhh-cccCCChHHHHHhCCcHH
Q 010323 161 SEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGA-LFLPETPNSIIQRSNDLQ 239 (513)
Q Consensus 161 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~ 239 (513)
.|++|+++|++++++...+..+|..+++.+++.+.+. .+||+.|++.+++.++..+.. +++||+++... + +
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~ 203 (408)
T PRK09874 132 ATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS---YGLRPVFFITASVLFLCFLVTLFCIRENFQPVS---K--K 203 (408)
T ss_pred HHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHHhccCccccc---c--h
Confidence 8999999999999999999999999999998877653 579999999888776655544 44666532100 0 0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCC
Q 010323 240 RAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLS 319 (513)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 319 (513)
+. .+. + ...+.+++ ++.+...................+.+.+..+.+.+
T Consensus 204 ~~-----------------~~~-------~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (408)
T PRK09874 204 EM-----------------LHM-------R----EVVTSLKN---PKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGN 252 (408)
T ss_pred hh-----------------hHH-------H----HHHHhCcC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 00 000 0 00111111 11111111111111122233444556666554333
Q ss_pred chhH---HHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHH
Q 010323 320 ESTS---LLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLIC 396 (513)
Q Consensus 320 ~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (513)
.... .+......+++.+++.+..+++.||++||+.+..+.....++.+.+... ++.+...+...
T Consensus 253 ~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~ 319 (408)
T PRK09874 253 VSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-------------QTPLQLGILRF 319 (408)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHH
Confidence 3221 2244455667778888899999999999999888777666555443332 23444445555
Q ss_pred HHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHHHHHHHHHHH
Q 010323 397 VYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVH 472 (513)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (513)
+.+.+.+...+.. .....+..|++.+|+..++.+....+|..++|.+.|.+.+..++...+...+...+.+.+..
T Consensus 320 ~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 394 (408)
T PRK09874 320 LLGAADGALLPAV-QTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYS 394 (408)
T ss_pred HHHhhhHhhHHHH-HHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence 5666655444333 44446778889999999999999999999999999999998886655555544444444433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.5e-30 Score=246.37 Aligned_cols=355 Identities=12% Similarity=0.087 Sum_probs=244.1
Q ss_pred HHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhH
Q 010323 31 ATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRR 110 (513)
Q Consensus 31 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr 110 (513)
.++.++.+.+....++. .|.+.+++|.|..+.|++.+.+.+++.+++++.|+++||+|||
T Consensus 12 ~~~~~~~~~~~~~~~~~--------------------lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k 71 (381)
T PRK03633 12 LCGLLLLTLAIAVLNTL--------------------VPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFN 71 (381)
T ss_pred HHHHHHHHHhhhhHHHH--------------------HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45567777777776655 2344556788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHH
Q 010323 111 ASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLI 190 (513)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l 190 (513)
+++..+.++.+++.+++++++|++.+++.|+++|++.+...+. ....+.+..++++|+++++.+..+.++|..+|+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 149 (381)
T PRK03633 72 RSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVV--VESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLL 149 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988887 77777888899999999999999999999999999
Q ss_pred HhhhcccCCccchHHHHHhhHHHHHHHH-HhhcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhh
Q 010323 191 NYGTQKIKGGWGWRISLAMAAAPALILT-LGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAK 269 (513)
Q Consensus 191 ~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (513)
++.+.+.. .|+.. +..+....... +.....+|+++ + +
T Consensus 150 ~~~l~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~--------------------------------~ 187 (381)
T PRK03633 150 VSKVSTEL---MSVLP-WVTGLVLAAILPLLFTRILNQQA------E--------------------------------N 187 (381)
T ss_pred Hhcccccc---cchHH-HHHHHHHHHHHHHHHhcccCCCC------C--------------------------------C
Confidence 88765431 12222 22222211111 11112222110 0 0
Q ss_pred hcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010323 270 TVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKL 349 (513)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 349 (513)
+++.+.++.++++. +.......+.....+.....+.|.+.++.|.+....+ .......+..++++...+++.||+
T Consensus 188 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~ 262 (381)
T PRK03633 188 HDSTSIWPMLKLRQ----ARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIG-FWMALLVSAGILGQWPIGRLADRF 262 (381)
T ss_pred CCCCCHHHHHHhcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHhhhHHHHHHc
Confidence 00112223332221 1111111112222233445568888888888887777 667788889999999999999999
Q ss_pred CcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHH
Q 010323 350 GRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSI 429 (513)
Q Consensus 350 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 429 (513)
++|+.+..+.....++...+.. .. .......+.+.+.... .|.......|..|++.++...+.
T Consensus 263 ~~~~~l~~~~~~~~~~~~~~~~--------------~~--~~~~~~~l~g~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~ 325 (381)
T PRK03633 263 GRLLVLRVQVFVVILGSIAMLS--------------QA--AMAPALFILGAAGFTL-YPVAMAWACEKVEHHELVAMNQA 325 (381)
T ss_pred CcHHHHHHHHHHHHHHHHHHhh--------------hH--HHHHHHHHHHHHHHhH-HHHHHHHHHccCCHHHHHHHHHH
Confidence 9999888777666665543321 11 1112223333332222 34445555788888888888888
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHHHHHHHHHH
Q 010323 430 NVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFV 471 (513)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (513)
.+...++|+.++|.+.|.+.|+.++...+...+.+.+...+.
T Consensus 326 ~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 326 LLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 888889999999999999999988655444444444444333
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=251.73 Aligned_cols=330 Identities=14% Similarity=0.119 Sum_probs=238.8
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhh
Q 010323 69 THISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIG 148 (513)
Q Consensus 69 ~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~ 148 (513)
|.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+.+.++++++.+++.|++.|++.+
T Consensus 29 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 108 (385)
T TIGR00710 29 PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGAS 108 (385)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchh
Confidence 44566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhh-cccCCC
Q 010323 149 FANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGA-LFLPET 227 (513)
Q Consensus 149 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~ 227 (513)
...+. ..+++.|++|+++|+++.++.+....+|..+++.+++.+.+. .+||+.|++.++..++..+.. ++.||+
T Consensus 109 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (385)
T TIGR00710 109 AGSVI--SQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW---LSWHAIFAFLSLAGILLSALIFFILPET 183 (385)
T ss_pred HHHHH--HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99888 889999999999999999999999999999999998876653 579999999888776655444 446765
Q ss_pred hHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHh
Q 010323 228 PNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGF 307 (513)
Q Consensus 228 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (513)
++... +++. + + ....+++.++++. ++...+..............
T Consensus 184 ~~~~~--~~~~----------------~----~----------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 227 (385)
T TIGR00710 184 LPYEA--RIQI----------------S----T----------YFETFLLLLKSKM----FWGYALIYGASFGGFFAFFS 227 (385)
T ss_pred CCCcc--cCCH----------------H----H----------HHHHHHHHHcCch----hHHHHHHHHHHHHHHHHHHH
Confidence 42100 0000 0 0 0001222222221 22222222222333445556
Q ss_pred cHHHHHH-hcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 010323 308 YAPVLFR-TIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKG 386 (513)
Q Consensus 308 ~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (513)
+.|.+++ +.|.++.+.+ .......++.+++.++.+++.||+++|+.+..+..+..++..++...... ...
T Consensus 228 ~~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 298 (385)
T TIGR00710 228 GAPFVYIDIMGVSPSVFG-LLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAIL--------GLG 298 (385)
T ss_pred cChHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh--------ccc
Confidence 6677665 6888888877 77778888999999999999999999998888777666666555443210 001
Q ss_pred hhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHH
Q 010323 387 NAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLC 450 (513)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 450 (513)
..+.......+.+.+.+.... .......|..| +.++++.++.+.....++.+.+.+.+...+
T Consensus 299 ~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~ 360 (385)
T TIGR00710 299 SWAMIIGPMMFVGIGNSMISS-IAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG 360 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 222333334445555554433 33444467776 678999999999888877777777774443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-31 Score=256.45 Aligned_cols=328 Identities=22% Similarity=0.365 Sum_probs=240.4
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhh
Q 010323 70 HISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGF 149 (513)
Q Consensus 70 ~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~ 149 (513)
.+.+++|.+..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..++++++.+++.|++.|++.+.
T Consensus 22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 101 (352)
T PF07690_consen 22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGF 101 (352)
T ss_dssp HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccc
Confidence 45778899999999999999999999999999999999999999999999999977777778888999999999999999
Q ss_pred hhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHh-hcccCCCh
Q 010323 150 ANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLG-ALFLPETP 228 (513)
Q Consensus 150 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p 228 (513)
..+. ...++.|++|+++|++++++......+|..+++.+++.+.+. .+||+.|++.+++.++..++ ..+++++|
T Consensus 102 ~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~~~~~~~~~~~~~~~~~~il~~~~~~~~~ 176 (352)
T PF07690_consen 102 FSPA--SNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY---FGWRWAFLISAILSLIAAILFILFLPEPP 176 (352)
T ss_dssp HHHH--HHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---CHHCCHHHHHHHHHHHHHHHHHCCC---S
T ss_pred cccc--ccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc---cccccccccccchhhhhhhhHhhhhhhcc
Confidence 9999 999999999999999999999999999999999999887643 57999999999988887664 24444443
Q ss_pred HHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhc
Q 010323 229 NSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFY 308 (513)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (513)
+....++++.++ ++.+.++++.++...+++.++......+...........+
T Consensus 177 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (352)
T PF07690_consen 177 PPRERESPKESE----------------------------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFF 228 (352)
T ss_dssp TTTT--SSTTTT------------------------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccc----------------------------cccccccccccccccccchhhhhhhhhhHHHHHHHHhhcc
Confidence 211111110000 0011122222222222332222333333333345567778
Q ss_pred HHHH-HHhcCCC-chhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 010323 309 APVL-FRTIKLS-ESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKG 386 (513)
Q Consensus 309 ~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (513)
.|.+ .+..|.+ ..+.+ .......+..+++.++.+++.||+++|+..........+....+..... .+
T Consensus 229 ~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 297 (352)
T PF07690_consen 229 LPLYLQEVLGFSGPSQAG-LLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF----------SS 297 (352)
T ss_dssp HHHHCCHHHHCCTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH----------HC
T ss_pred cchhhhhccCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH----------hh
Confidence 8887 5678888 56666 7788888899999999999999999987777766666665555443321 12
Q ss_pred hhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHH
Q 010323 387 NAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIA 442 (513)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 442 (513)
+.........+.+++.+... +....+..|..|++.+|++.|+.+...++++.++|
T Consensus 298 ~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 298 SPVWLIIALFLIGFGFGIVF-PILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-HHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 34444555666666665554 44466668999999999999999999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-30 Score=251.11 Aligned_cols=372 Identities=9% Similarity=0.068 Sum_probs=248.7
Q ss_pred CCcchHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHH
Q 010323 16 NGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLI 95 (513)
Q Consensus 16 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i 95 (513)
+.+.++..+.......+..+..+++....+.. .|.+++++|+|+.+.+++.+.+.+++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~p~i~~~~~~s~~~~gl~~~~~~~g~~i 76 (438)
T PRK10133 17 DAGQSRSYIIPFALLCSLFFLWAVANNLNDIL--------------------LPQFQQAFTLTNFQAGLIQSAFYFGYFI 76 (438)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 33333434444344445556666766554443 4556778899999999999999999999
Q ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHh---hhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccch
Q 010323 96 ASLFASSVTRAFGRRASILVGGAAFLAGSALG---GAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAF 172 (513)
Q Consensus 96 ~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~ 172 (513)
++++.|++.||+|||+++..+..+++++++++ .++++++.++++|+++|+|.|...+. ...++.|+.++++|.+.
T Consensus 77 ~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~--~~~~v~~~~~~~~~~~~ 154 (438)
T PRK10133 77 IPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETA--ANPFVTVLGPESSGHFR 154 (438)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhh--HHHHHHHhCChhhHHHH
Confidence 99999999999999999999999999999875 56899999999999999999999998 88899998777777778
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcccC--------------C---c------cchHHHHHhhH-HHHHHHHHh-hcccCCC
Q 010323 173 NIGYELCTAIGILAASLINYGTQKIK--------------G---G------WGWRISLAMAA-APALILTLG-ALFLPET 227 (513)
Q Consensus 173 ~~~~~~~~~~G~~~~~~l~~~~~~~~--------------~---~------~~wr~~f~~~~-~~~~~~~~~-~~~~~e~ 227 (513)
+++.+..+.+|..+++.++..+.... + . .+||++|+... +..++..+. ....||.
T Consensus 155 ~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~ 234 (438)
T PRK10133 155 LNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPAL 234 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999998876543100 0 0 25777776433 333333322 2235553
Q ss_pred hHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHh
Q 010323 228 PNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGF 307 (513)
Q Consensus 228 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (513)
+.. +.+ + +...+...+.+++++++. ++...+..++..........
T Consensus 235 ~~~---~~~--~--------------------------~~~~~~~~~~~~ll~~~~----~~~~~l~~~~~~~~~~~~~~ 279 (438)
T PRK10133 235 QSD---NHS--D--------------------------AKQGSFSASLSRLARIRH----WRWAVLAQFCYVGAQTACWS 279 (438)
T ss_pred Ccc---ccc--c--------------------------ccccchhhhHHHHHhCch----HHHHHHHHHHHHHHHHHHHH
Confidence 210 000 0 000000111223333322 21222222333333343444
Q ss_pred cHHHH-HH-hcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 010323 308 YAPVL-FR-TIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSK 385 (513)
Q Consensus 308 ~~~~~-~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (513)
|.+.+ .+ ..|.++.+.+ .......++.++++++++++.||+++|+.+..+..+..+.+++..+.
T Consensus 280 ~~~~~l~~~~~g~s~~~ag-~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~------------- 345 (438)
T PRK10133 280 YLIRYAVEEIPGMTAGFAA-NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA------------- 345 (438)
T ss_pred HHHHHHhhhcCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-------------
Confidence 56655 44 4788988888 88889999999999999999999999998887766665554443322
Q ss_pred chhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc-hhhhHHHHH
Q 010323 386 GNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK-AGIFFFFGG 462 (513)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 462 (513)
+.. .......+.+++.+..+++. .....+..|+ ..+++.++.. ....++.++|++.|.+.|..+ ....+++..
T Consensus 346 ~~~-~~~~~~~l~glg~~~i~P~~-~s~a~~~~~~-~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~ 419 (438)
T PRK10133 346 GGH-VGLIALTLCSAFMSIQYPTI-FSLGIKNLGQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPA 419 (438)
T ss_pred CCh-HHHHHHHHHHHHHHHHHHHH-HHHHHcccch-hhccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 111 22445566777777776555 4444677764 4677777776 455788999999999999876 334333333
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.5e-30 Score=246.61 Aligned_cols=352 Identities=15% Similarity=0.079 Sum_probs=234.4
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhh---h-chhHHHHHHHHHHHHhhhh
Q 010323 73 NYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGG---A-ALNIYMLIFGRVLLGVGIG 148 (513)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~l~Gi~~~ 148 (513)
+|+|+|.++.+++.+.+.+++.++++++|+++||+||||++..+..+.+++++++. + .++++.+++.|++.|++.+
T Consensus 41 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~ 120 (402)
T TIGR00897 41 KALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYP 120 (402)
T ss_pred HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchH
Confidence 45688999999999999999999999999999999999999999999998876553 3 3578889999999999988
Q ss_pred hhhhcccccceeeccCCCCCccchhhHHHHHHHHHH-HHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHH-hhcccCC
Q 010323 149 FANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGI-LAASLINYGTQKIKGGWGWRISLAMAAAPALILTL-GALFLPE 226 (513)
Q Consensus 149 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e 226 (513)
...+. ....+.+++|+++|++++++...+.++|. .+++.+++.+.+. .||+..++......++..+ ..++.+|
T Consensus 121 ~~~~~--~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (402)
T TIGR00897 121 LFAYS--FLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA---FGEMNTLWSALAFVLTGGVIALFSNKD 195 (402)
T ss_pred HHHhH--HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---cchHHHHHHHHHHHHHHHHHHHhccCC
Confidence 87777 77788899999999999999999999997 5788887765543 4655554443332222222 2233444
Q ss_pred ChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhH
Q 010323 227 TPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIG 306 (513)
Q Consensus 227 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (513)
.++... +++ .+ +.++ .+..++..+++ +.++...+..++.....+...
T Consensus 196 ~~~~~~-~~~-~~-----------------~~~~----------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 242 (402)
T TIGR00897 196 IFTPQH-MQT-RE-----------------KFSE----------LGKAATILFTN----PNVLLGGMVRIINTIGLFGFA 242 (402)
T ss_pred CCCccc-ccC-Cc-----------------chhh----------HHHHHHHHHcC----hhHHHHHHHHHHHHHHHHHHH
Confidence 321000 000 00 0000 00012223322 223333333444445566777
Q ss_pred hcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHH-HhHHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 010323 307 FYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFL-VGGIQMLAAQVMIGSIMENQLGDQGGFSK 385 (513)
Q Consensus 307 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (513)
.+.|.+.++.|.+..+.+ .......++..++.+..|+++||++||+... .+.....++...+...... ..
T Consensus 243 ~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~--------~~ 313 (402)
T TIGR00897 243 VFLPMFVAELGFSTSEWL-QIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH--------FG 313 (402)
T ss_pred HHHHHHHHHcCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc--------cC
Confidence 889999999999988877 6777788899999999999999999888764 2233333332222221100 01
Q ss_pred chhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHHHH
Q 010323 386 GNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVV 465 (513)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (513)
++.+......++.+.+.+.. .+... ...|..| ++|+++.|+.+....+++.++|.+.+.+.+..++...+...+++.
T Consensus 314 ~~~~~~~~~~~~~G~~~~~~-~~~~~-~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~ 390 (402)
T TIGR00897 314 HSFAVALIIAIALGIFLAGY-VPLAA-VFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALY 390 (402)
T ss_pred CcHHHHHHHHHHHHHHHHHH-HHHHH-HHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 23344444455555554432 34333 3356655 689999999999999999999999999999988554444444444
Q ss_pred HHHHHHHhh
Q 010323 466 VMTTFVHFF 474 (513)
Q Consensus 466 ~~~~~~~~~ 474 (513)
+++.+...+
T Consensus 391 ~i~~~~~~~ 399 (402)
T TIGR00897 391 VVSAFLTAF 399 (402)
T ss_pred HHHHHHHHH
Confidence 444444333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-30 Score=248.62 Aligned_cols=357 Identities=17% Similarity=0.186 Sum_probs=264.8
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchh--HHHHHHHHHHHHhhhhh
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALN--IYMLIFGRVLLGVGIGF 149 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~Gi~~~~ 149 (513)
+.++++|..+.+++.++++.|+.+++++.|+++||+|.|+++..+.++.++++++..++.+ ++.+++.|+++|++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 6789999999999999999999999999999999999999999999999999999998854 56789999999999999
Q ss_pred hhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcc-cCCCh
Q 010323 150 ANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALF-LPETP 228 (513)
Q Consensus 150 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p 228 (513)
.+|. ...+.+.|.|++||++..++..++..+|.+++.++++.+.+. ..||+..|++.++.+++..+++++ ..|+|
T Consensus 145 ~~pa--~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s--~~GW~sifY~~g~~g~i~~~~w~~~~~d~P 220 (466)
T KOG2532|consen 145 LFPA--IGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES--SLGWPSIFYVFGIVGLIWFILWFLFYSDSP 220 (466)
T ss_pred HHhh--hhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--CCCCchHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999 999999999999999999999999999999999998888765 368999999999999998877655 67777
Q ss_pred HHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHh---hhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhh
Q 010323 229 NSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSI---AKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVI 305 (513)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (513)
.....- .++ |.+..++...+ +++.+.|++++++ .+.++...+..++...++..+
T Consensus 221 ~~h~~i---s~~----------------El~~I~~~k~~~~~~~~~~vP~~~i~t----s~~vwai~~~~f~~~~~~~~l 277 (466)
T KOG2532|consen 221 SKHPNI---SEK----------------ELKYIEKGKSEAHVKKKPPVPYKAILT----SPPVWAIWISAFGGNWGFYLL 277 (466)
T ss_pred ccCCCC---CHH----------------HHHHHHhcccccccCCCCCCCHHHHHc----CHHHHHHHHHHHHHHHHHHHH
Confidence 431100 011 11111111111 1113567777764 456778888888888889999
Q ss_pred HhcHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcc--------h-HHHHhHHHHHHHHHHHHHHHHh
Q 010323 306 GFYAPVLFRT-IKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRK--------V-LFLVGGIQMLAAQVMIGSIMEN 375 (513)
Q Consensus 306 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--------~-~~~~~~~~~~~~~~~~~~~~~~ 375 (513)
..|.|.|+++ ++++..+.+ +..++..+...+..+++|.++||+.+| | .-.++....+++++.+.+.
T Consensus 278 ~~y~PtY~~~VL~f~v~~~G-~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~--- 353 (466)
T KOG2532|consen 278 LTYLPTYLKEVLGFDVRETG-FLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT--- 353 (466)
T ss_pred HHHhhHHHHHHhCCChhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec---
Confidence 9999999976 899999888 888899999999999999999998652 2 2233444444444444443
Q ss_pred hcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhc---
Q 010323 376 QLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHF--- 452 (513)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--- 452 (513)
+..+.+..++++.+.....+...+.. ..-..+. .+++.+..+|+.+....+.++++|.+.+.+..+.
T Consensus 354 --------~~~~~~~a~~~l~~~~~~~g~~~~Gf-~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~ 423 (466)
T KOG2532|consen 354 --------SDEHRLLAVILLTIAIGLSGFNISGF-YKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTRE 423 (466)
T ss_pred --------CCCcchHHHHHHHHHHHHcccchhhh-Hhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHH
Confidence 22233334443333333333322222 1111232 4588899999999999999999999999998421
Q ss_pred chhh-hHHHHHHHHHHHH
Q 010323 453 KAGI-FFFFGGWVVVMTT 469 (513)
Q Consensus 453 ~~~~-~~~~~~~~~~~~~ 469 (513)
.|.. +++.+++..+..+
T Consensus 424 eW~~VF~i~a~i~~~~~i 441 (466)
T KOG2532|consen 424 EWRIVFLIAAGILIVGNI 441 (466)
T ss_pred HHHHHHHHHHHHHHHhch
Confidence 3444 4444444444443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=250.01 Aligned_cols=338 Identities=20% Similarity=0.285 Sum_probs=235.5
Q ss_pred chhHHHHHHHH-----HHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHH--------HHHHHHHHHH
Q 010323 78 DSQLLTSFTSS-----LYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIY--------MLIFGRVLLG 144 (513)
Q Consensus 78 s~~~~~~~~s~-----~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G 144 (513)
++.+.+.+.+. .+++..+++++.|+++||+|||+++..+.++..++.++++++++++ .+++.|+++|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G 107 (394)
T TIGR00883 28 GDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQG 107 (394)
T ss_pred CChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHH
Confidence 44555554433 3344457899999999999999999999999999999999998875 4888999999
Q ss_pred hhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhccc-----CCccchHHHHHhhHHHHHHHHH
Q 010323 145 VGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKI-----KGGWGWRISLAMAAAPALILTL 219 (513)
Q Consensus 145 i~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~-----~~~~~wr~~f~~~~~~~~~~~~ 219 (513)
++.+...+. ...++.|++++++|++..+....+..+|..+++.++..+... .+.++||+.|++.+++.++...
T Consensus 108 ~~~~~~~~~--~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 108 FSLGGEWGG--AALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY 185 (394)
T ss_pred hhccccccc--cHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence 999999988 889999999999999999999999999999999887655431 1236899999988777666655
Q ss_pred hhcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhh
Q 010323 220 GALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQV 299 (513)
Q Consensus 220 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (513)
.....||+|++..++++ +++.+.+.++.++++. +.++......+...
T Consensus 186 ~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 232 (394)
T TIGR00883 186 LRRNLEETPVFEKAQEK-------------------------------HKKKRGPIRETLTKHR--KPFLLGLGLVIATT 232 (394)
T ss_pred HHHhcCCChhHHHHHhc-------------------------------cccccCCHHHHHHhch--HHHHHHHHHHHHHH
Confidence 55557777643211100 0111223344433321 12333333334444
Q ss_pred cchhhhHhcHHHHH-HhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHH-HHHHHHHhhc
Q 010323 300 TGINVIGFYAPVLF-RTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQV-MIGSIMENQL 377 (513)
Q Consensus 300 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 377 (513)
........+.|.+. ++.|.++.+.+ .......+...++.++.+++.||++||+.+.....+..+... .+....
T Consensus 233 ~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---- 307 (394)
T TIGR00883 233 TTFYLITTYLPTYLTQTLGLSANSAL-LVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL---- 307 (394)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 44556667788887 55788887777 777778889999999999999999999987755544433332 222111
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHH-HHHHHHHHHHHHHhHHHHHhcc-hh
Q 010323 378 GDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINV-AVGFLFTFLIAQTFLAMLCHFK-AG 455 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~-~~ 455 (513)
...+.+......++.+++.+....+. ..+..|.+|++.|+++.++.+ ....++..++|.+.|.+.++.+ +.
T Consensus 308 ------~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~ 380 (394)
T TIGR00883 308 ------DSGSFTLFFFLVLGLALIGGMYTGPM-GSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWY 380 (394)
T ss_pred ------cCCchHHHHHHHHHHHHHHHHHhhhH-HHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcch
Confidence 11234444445555555555554444 566689999999999999854 4456788899999999999887 44
Q ss_pred hhHHHHH
Q 010323 456 IFFFFGG 462 (513)
Q Consensus 456 ~~~~~~~ 462 (513)
.......
T Consensus 381 ~~~~~~~ 387 (394)
T TIGR00883 381 AIGYYLA 387 (394)
T ss_pred hHHHHHH
Confidence 4444333
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-30 Score=245.58 Aligned_cols=346 Identities=14% Similarity=0.159 Sum_probs=239.8
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHH-HHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhh
Q 010323 71 ISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASIL-VGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGF 149 (513)
Q Consensus 71 i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~ 149 (513)
+++++|.|..+.|++.+++.++..+.+++.|+++||+||||.++ .+..+..++.++++++++++.+++.|++.|.+.+.
T Consensus 24 l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 103 (375)
T TIGR00899 24 LSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFAST 103 (375)
T ss_pred HHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhh
Confidence 46778999999999999999999999999999999999988765 46666677788889999999999999999988887
Q ss_pred hhhcccccceeeccCCCCCccch--hhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhh-cccCC
Q 010323 150 ANQASSVPLYLSEMAPPRHRGAF--NIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGA-LFLPE 226 (513)
Q Consensus 150 ~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e 226 (513)
..|. ..++..|+.|+++|++. .+....+.++|..+++.+++.+.+. .+||+.|++.+++.++..+.. +++||
T Consensus 104 ~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~ 178 (375)
T TIGR00899 104 ANPQ--LFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG---FGFTVMFLTAALAFVLCGVLVWLFLPS 178 (375)
T ss_pred hHHH--HHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8877 77888898887777654 5777888899999999998877653 579999999988777665554 44788
Q ss_pred ChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhH
Q 010323 227 TPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIG 306 (513)
Q Consensus 227 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (513)
+|++...+. .+.+.++.++++..+....... ..........
T Consensus 179 ~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 219 (375)
T TIGR00899 179 YPRGAPGAL-----------------------------------TRLEVRGLLASRDTRLLFVACT----LMWGCNILYI 219 (375)
T ss_pred cccCccccc-----------------------------------CcchhhhhhcCcchHHHHHHHH----HHHHHHHHHH
Confidence 763210000 0001111222221111111111 1111223334
Q ss_pred hcHHHHH-HhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 010323 307 FYAPVLF-RTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSK 385 (513)
Q Consensus 307 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (513)
.+.|.++ ++.|.++.+.+ ..........+++.++.+++.||++||+.+..+.....+....+...
T Consensus 220 ~~~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------------- 285 (375)
T TIGR00899 220 INMPLLIIHELGLPDKLAG-LMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD------------- 285 (375)
T ss_pred hhhHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-------------
Confidence 4556665 56788887777 56666666778888999999999999998877665544443332221
Q ss_pred chhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHHHH
Q 010323 386 GNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVV 465 (513)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (513)
++.+.......+.+++.+... +....+..|..|+ +++++.++.+...++|..++|.+.|.+.+..++...+...+++.
T Consensus 286 ~~~~~~~~~~~~~g~~~g~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~ 363 (375)
T TIGR00899 286 NSLWALLMLQLLNAIFIGILA-GIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVML 363 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 234444444455555554443 3344555788775 56799999999999999999999999999888766555555555
Q ss_pred HHHHHHHhhcc
Q 010323 466 VMTTFVHFFLP 476 (513)
Q Consensus 466 ~~~~~~~~~~~ 476 (513)
+.+.+...+++
T Consensus 364 ~~~~~~~~~~~ 374 (375)
T TIGR00899 364 IVALFCLLLIK 374 (375)
T ss_pred HHHHHHHheec
Confidence 55555555443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=248.79 Aligned_cols=307 Identities=17% Similarity=0.166 Sum_probs=232.6
Q ss_pred HHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhH
Q 010323 22 FVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFAS 101 (513)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g 101 (513)
..+.+...++..++....|...++.+. .-++.+|.+....+.+.+.++++++++++.+++|
T Consensus 42 ~dl~i~~~~~~~y~~~~~d~~si~~a~-------------------l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~ 102 (495)
T KOG2533|consen 42 LDLFILPFLCYLYFHAYLDKSSIVNAS-------------------LSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSG 102 (495)
T ss_pred HHHHHHHHHHHHHHHHhcchhcchhHH-------------------HcCCccccchhhhhhhhHHHHHHHHHHHHHhhHH
Confidence 345666777777888888887776552 2336788889999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHH
Q 010323 102 SVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTA 181 (513)
Q Consensus 102 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 181 (513)
.+.||++..+.+....+++++..++....+|++.+++.|++.|+.++..+|. ...+++.|+.+++|++.++++.+..+
T Consensus 103 ~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~--~~~~lg~wy~~~e~g~r~~~~~a~~~ 180 (495)
T KOG2533|consen 103 LLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPG--VVAILGNWYGKSERGLRMGIWYASAS 180 (495)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchH--HHHHHHhhcChhhhhhhHHHHHHhcc
Confidence 9999999999999999999999999989999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccC---CccchHHHHHhhHHHHHHHHHhh-cccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHH
Q 010323 182 IGILAASLINYGTQKIK---GGWGWRISLAMAAAPALILTLGA-LFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAE 257 (513)
Q Consensus 182 ~G~~~~~~l~~~~~~~~---~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (513)
+|.++|+++++.+.+.. ...||||.|++.++++++..++. +++|+.|....-.++ +|.+-..++.
T Consensus 181 ~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~--~ek~~~~~~~--------- 249 (495)
T KOG2533|consen 181 LGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTD--EEKELVVERL--------- 249 (495)
T ss_pred hhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccch--HHHHHHHHHH---------
Confidence 99999999988854322 23589999999999998877655 459999852100000 0000000000
Q ss_pred HHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHh-cCCCchhHHHHHHHHHHHHHH
Q 010323 258 FDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRT-IKLSESTSLLMSAVVTGGIGT 336 (513)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~ 336 (513)
+++......++.++++.. +..+.+.++...+..++.....+.+.+|+|.++++ .|++..++. .+.++..++++
T Consensus 250 ----~~~~~~~~~~~~~~~~~~-~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~-~ls~~~~~~g~ 323 (495)
T KOG2533|consen 250 ----RESPSGGIENKFKWKGFK-EALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQAN-LLSTPYDVGGI 323 (495)
T ss_pred ----HhccCCCcccccCHHHHH-HHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhc-cccchHHhhhH
Confidence 000000001112223332 23334456667777777777888899999999988 568888888 89999999999
Q ss_pred HHHHHHHHhhhc----cCcchHHHHhHHHHHHHH
Q 010323 337 LSTIISMILVDK----LGRKVLFLVGGIQMLAAQ 366 (513)
Q Consensus 337 ~~~~~~g~l~d~----~g~~~~~~~~~~~~~~~~ 366 (513)
++.+++|+++|| ..+|........+.....
T Consensus 324 v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g 357 (495)
T KOG2533|consen 324 VGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIG 357 (495)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999 445555444444443333
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=240.44 Aligned_cols=321 Identities=24% Similarity=0.337 Sum_probs=263.4
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFAN 151 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~ 151 (513)
.+++|.+..+.+++.+...++..+++++.|+++||+|||+.+..+..+..++.+...++++++.+++.|++.|++.+...
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 105 (352)
T cd06174 26 AEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALY 105 (352)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHccccccc
Confidence 34457799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCChHHH
Q 010323 152 QASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSI 231 (513)
Q Consensus 152 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~ 231 (513)
+. ..+++.|++|+|+|++.+++......+|..+++.+++.+.+. .+||+.+++.+++.++..+...+++
T Consensus 106 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~------ 174 (352)
T cd06174 106 PA--AAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES---LGWRWLFLILAILGLLLALLLLFLL------ 174 (352)
T ss_pred Hh--HHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 88 899999999999999999999999999999999998887664 4699999998887777665544431
Q ss_pred HHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHH
Q 010323 232 IQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPV 311 (513)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (513)
+.++...+..+...........+.|.
T Consensus 175 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (352)
T cd06174 175 ------------------------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPL 200 (352)
T ss_pred ------------------------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 12333334444455556677778888
Q ss_pred HHHhc-CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcch-HHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhH
Q 010323 312 LFRTI-KLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKV-LFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAY 389 (513)
Q Consensus 312 ~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
+.++. +.+..+.+ .......++..++.++.+++.||++||+ .+..+..+..++...+... ++.+
T Consensus 201 ~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~ 266 (352)
T cd06174 201 YLQEVLGLSAAEAG-LLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA-------------PSLA 266 (352)
T ss_pred HHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-------------ccHH
Confidence 88765 78888777 8888899999999999999999999999 8888888887777766654 3355
Q ss_pred HHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHHHHHHHH
Q 010323 390 LILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTT 469 (513)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (513)
.......+.+.+.+... +....+..|..|+++|++..|+.+....++..+++.+.+.+.+..++...+....+..+.+.
T Consensus 267 ~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~ 345 (352)
T cd06174 267 LLLVALLLLGFGLGFAF-PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAA 345 (352)
T ss_pred HHHHHHHHHHHHHhccc-hhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHH
Confidence 56666666777666554 45566668999999999999999999999999999999999988876665555555554444
Q ss_pred HHH
Q 010323 470 FVH 472 (513)
Q Consensus 470 ~~~ 472 (513)
+..
T Consensus 346 i~~ 348 (352)
T cd06174 346 LLL 348 (352)
T ss_pred HHh
Confidence 443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=243.50 Aligned_cols=330 Identities=15% Similarity=0.120 Sum_probs=236.4
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhh
Q 010323 69 THISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIG 148 (513)
Q Consensus 69 ~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~ 148 (513)
|.+++++|+++++.+++.+++.++..++++++|+++||+|||+++..+..+.+++.+++.++++++.+++.|+++|++.+
T Consensus 30 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~ 109 (401)
T PRK11043 30 KAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVC 109 (401)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhH
Confidence 34466778899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCCh
Q 010323 149 FANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETP 228 (513)
Q Consensus 149 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 228 (513)
...+. ..+++.|+++++++++..+.......+|..++|.+++.+.+. .+||+.|++.+++.++..+..++++|++
T Consensus 110 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (401)
T PRK11043 110 SAAVI--WQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH---FGWQAIFATLFAITLLLILPTLRLKPSK 184 (401)
T ss_pred HHHHH--HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 87777 778899999999999999998888899999999998877654 5799999998887777666555555543
Q ss_pred HHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhc
Q 010323 229 NSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFY 308 (513)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (513)
+. +++ + +++.++++.++++. ++...+........+.....+
T Consensus 185 ~~---~~~--~------------------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 225 (401)
T PRK11043 185 KA---RKQ--S------------------------------QDALTFKQLLKSKT----YLGNVLIFAACSAAFFAWLTG 225 (401)
T ss_pred Cc---ccc--c------------------------------hHHHHHHHHHcChh----HHHHHHHHHHHHHHHHHHHHH
Confidence 20 000 0 00011223332221 111111111222233445567
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchh
Q 010323 309 APVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNA 388 (513)
Q Consensus 309 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (513)
.|.+.++.|++..+.+ .......++.+++.++.+++.||+++|+..........++...+...... ..+..
T Consensus 226 ~p~~~~~~g~s~~~~g-~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 296 (401)
T PRK11043 226 SPFILEQMGYSPADIG-LSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLL--------SHPSL 296 (401)
T ss_pred hHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHh--------ccCcH
Confidence 7888888899888777 66677778888999999999999999887665555544444333222110 11223
Q ss_pred HHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc
Q 010323 389 YLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK 453 (513)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (513)
+.......+.+.+.+..++ .......+..| +.++++.|+.+.....++..++.+.+.+.+...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 359 (401)
T PRK11043 297 VPLLIPFCVMAAANGAIYP-IVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPL 359 (401)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence 3333444455555554443 33333346666 579999999999999999999999998877543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=243.40 Aligned_cols=343 Identities=13% Similarity=0.056 Sum_probs=235.5
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhh
Q 010323 73 NYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQ 152 (513)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~ 152 (513)
+++|.+..+.+++.+.+.+++.++.+++|+++||+|||++++++.++.+++++.+.++.+. ++.|+++|++.+...|
T Consensus 31 ~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~p 107 (393)
T PRK11195 31 KELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSP 107 (393)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4556688999999999999999999999999999999999999999999999888777664 7889999999999999
Q ss_pred cccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCChHHHH
Q 010323 153 ASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSII 232 (513)
Q Consensus 153 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~ 232 (513)
. ..+++.|++|+++|++++++.+....+|.++||.+++.+.+. .|+..+.+.+...++..+....+||+|++..
T Consensus 108 a--~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~----~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~ 181 (393)
T PRK11195 108 A--KYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP----HAEAALAVCALIYLLAALFNLFIPRLGARRP 181 (393)
T ss_pred H--HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Confidence 9 999999999999999999999999999999999999988763 3777777766555545455566888653211
Q ss_pred HhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHH
Q 010323 233 QRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVL 312 (513)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (513)
.++.+..+ ..++.. ..++.+++++..+.......+.. .......+..+.+
T Consensus 182 ~~~~~~~~----------------~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 231 (393)
T PRK11195 182 GQSWNPIA----------------LLRDFF----------HACRVLWRDKLGRFSLAGTTLFW----GAGATLRFLVLAW 231 (393)
T ss_pred ccCCCHHH----------------HHHHHH----------HHHHHHHhCchhHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 01000000 000000 01123333332222222211111 1122333344445
Q ss_pred HH-hcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHH
Q 010323 313 FR-TIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLI 391 (513)
Q Consensus 313 ~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
.+ ..|.++.+.+ .......++.++++++.+++.||.++|+.+..+. ..++....+... ++.+..
T Consensus 232 ~~~~lg~s~~~~G-~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~-------------~~~~~~ 296 (393)
T PRK11195 232 APVALGITLNQPA-YLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQ-------------HSLLPA 296 (393)
T ss_pred HHHHcCCChhHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHH-------------hHHHHH
Confidence 54 4788888877 8888888999999999999999998888776664 333322222221 334444
Q ss_pred HHHHHHHHHhhhccccccccceecccCChhh-hhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHHHHHHHHH
Q 010323 392 LVLICVYVAGFAVSWGPLGFLVPSEIFPLEI-RSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTF 470 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (513)
.....+.+.+.+....+.... ..+..|++. +|++.++.+...+++..++..+.+.+ +..+-.....+.+++.+....
T Consensus 297 ~~~~~~~G~~~g~~~~~~~~~-~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 374 (393)
T PRK11195 297 YPLLILIGALGGFFVVPMNAL-LQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALA 374 (393)
T ss_pred HHHHHHHHHhhhhhhhhHHHH-HHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHH
Confidence 455556666666555555444 467666554 79999999999999999999988854 667754444444444444433
Q ss_pred H
Q 010323 471 V 471 (513)
Q Consensus 471 ~ 471 (513)
.
T Consensus 375 ~ 375 (393)
T PRK11195 375 M 375 (393)
T ss_pred H
Confidence 3
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=241.68 Aligned_cols=322 Identities=14% Similarity=0.113 Sum_probs=230.5
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFAN 151 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~ 151 (513)
++++|+|..+.|++.+.+.++..+.+++.|+++||+|||+++..+.++.+++.+.+.++++++.+++.|+++|++.+...
T Consensus 38 ~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~ 117 (400)
T PRK11646 38 VDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFD 117 (400)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHh-hcccCCChHH
Q 010323 152 QASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLG-ALFLPETPNS 230 (513)
Q Consensus 152 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~ 230 (513)
+. ..+++.|++|+++|++++++......+|..+||.+++.+.. ++||+.|++.++..++..+. .++.||.+.
T Consensus 118 ~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~----~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~- 190 (400)
T PRK11646 118 PP--RTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ----YDFRLVCATGAVLFVLAAAFNAWLLPAYKL- 190 (400)
T ss_pred HH--HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHhCCcccc-
Confidence 88 88899999999999999999999999999999999988763 58999999988776665433 344555310
Q ss_pred HHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHH
Q 010323 231 IIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAP 310 (513)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (513)
.+.+ + +.+.++++.++++. ++...+..+...........+.|
T Consensus 191 --~~~~--~------------------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p 232 (400)
T PRK11646 191 --STVR--T------------------------------PVREGMTRVLRDKR----FVTYVLTLTGYYMLAVQVMLMLP 232 (400)
T ss_pred --cccc--h------------------------------hhHHHHHHHHcCch----HHHHHHHHHHHHHHHHHHHHhhh
Confidence 0000 0 00011223332221 11111111111111223345778
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhh-hccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhH
Q 010323 311 VLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILV-DKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAY 389 (513)
Q Consensus 311 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~-d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
.+.++.+.++.+.+ .......+....+....+++. ||++.++.+..+..+..++..++... ++.+
T Consensus 233 ~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~ 298 (400)
T PRK11646 233 IMVNDIAGSPSAVK-WMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV-------------SNLQ 298 (400)
T ss_pred hhHHhhcCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-------------hhHH
Confidence 88888766666666 555555555555454445555 45666666666666666655544432 2333
Q ss_pred HHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc
Q 010323 390 LILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK 453 (513)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (513)
.......+++.+.+... |....+..+..|++.||++.|+.+....+|..++|.+.|.+.|+.+
T Consensus 299 ~~~~~~~l~~~g~~~~~-p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 299 QLFTLICLFYIGSIIAE-PARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred HHHHHHHHHHHHHHHHH-ccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 34444445555544443 4445566799999999999999999999999999999999998853
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=242.83 Aligned_cols=326 Identities=18% Similarity=0.198 Sum_probs=225.3
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhh
Q 010323 69 THISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIG 148 (513)
Q Consensus 69 ~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~ 148 (513)
|.+.+++|.+..+.++..+.+.++..+++++.|+++||+|||+++..+.++..++.+++.++++++.+++.|+++|++.+
T Consensus 27 p~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~ 106 (392)
T PRK10473 27 PRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAG 106 (392)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhh
Confidence 44566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHh-hcccCCC
Q 010323 149 FANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLG-ALFLPET 227 (513)
Q Consensus 149 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~ 227 (513)
...+. ...++.|++|+++|+++.++......+|..++|.+++.+.+. .+||+.|++.++..++..+. .+++||+
T Consensus 107 ~~~~~--~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~---~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 181 (392)
T PRK10473 107 CCYVV--AFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK---FPWQSLFYTMAAMGILVLLLSLFILKET 181 (392)
T ss_pred HHHHH--HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---cChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888 888999999999999999999999999999999998876543 57999999988877765544 3457776
Q ss_pred hHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHh
Q 010323 228 PNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGF 307 (513)
Q Consensus 228 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (513)
++.. +++ .++ . .+..++.++++ +....... .............
T Consensus 182 ~~~~--~~~-~~~----------------~--------------~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~ 224 (392)
T PRK10473 182 RPAR--APA-ASS----------------K--------------PRENSESLLNR---FFLSRLVI-TTLSVTVILTFVN 224 (392)
T ss_pred CCcc--cCC-ccc----------------h--------------HHHHHHHHhCH---HHHHHHHH-HHHHHHHHHHHHH
Confidence 4210 000 000 0 00001112111 11111111 1111111223334
Q ss_pred cHHHHH-HhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 010323 308 YAPVLF-RTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKG 386 (513)
Q Consensus 308 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (513)
+.|.+. ++.|+++.+.+ .......+..+++.++.+++.||+++|+.+..+..+..++.+.+... .
T Consensus 225 ~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------------~ 290 (392)
T PRK10473 225 TSPVLLMEQMGFSRGEYA-IIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALS-------------P 290 (392)
T ss_pred hCHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-------------H
Confidence 455554 56788887777 77778888999999999999999999999888887777666655543 1
Q ss_pred hhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhh
Q 010323 387 NAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGI 456 (513)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (513)
..+.......+...+.+..+... ...+..|.+.|+ |..+....++..+++.+.+.+.+..++..
T Consensus 291 ~~~~~~~~~~l~~~g~~~~~~~~---~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~ 354 (392)
T PRK10473 291 SHAVSLFGITLICAGFSVGFGVA---MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISA 354 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH---HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 22222333333333433333221 213444544443 34444455666777777777777776543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=240.79 Aligned_cols=326 Identities=17% Similarity=0.170 Sum_probs=225.9
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhh
Q 010323 68 DTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGI 147 (513)
Q Consensus 68 ~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~ 147 (513)
.|.+.+++|+++++.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+.+.++++++.+++.|++.|++.
T Consensus 14 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~ 93 (377)
T PRK11102 14 LPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAA 93 (377)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHh-hcccCC
Q 010323 148 GFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLG-ALFLPE 226 (513)
Q Consensus 148 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e 226 (513)
+...+. ..+++.|++|+++|++++++......+|..++|.+++.+.+. .+||+.|++.+++.++..+. .+++||
T Consensus 94 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (377)
T PRK11102 94 AAASVV--INALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW---FSWHAIFWVLALAAILAAALVFFFIPE 168 (377)
T ss_pred HHHHHH--HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 998888 888999999999999999999999999999999998877653 57999999888877765544 445777
Q ss_pred ChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhH
Q 010323 227 TPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIG 306 (513)
Q Consensus 227 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (513)
+++... +++ . +. ++ ...++++.++++ + .+...+..+..........
T Consensus 169 ~~~~~~-~~~--~-------------~~----~~----------~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~ 214 (377)
T PRK11102 169 TLPKER-RQP--F-------------HL----RT----------TIRNFASLFRHK---R-VLGYMLASGFSFAGMFSFL 214 (377)
T ss_pred cCcccc-cCC--C-------------Ch----HH----------HHHHHHHHHcCh---H-HHHHHHHHHHHHHHHHHHH
Confidence 642100 000 0 00 00 001122233221 1 2222222233333334444
Q ss_pred hcHHHHH-HhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 010323 307 FYAPVLF-RTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSK 385 (513)
Q Consensus 307 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (513)
.+.|.+. +..|.++.+.+ .......+..+++.++.+++.||+|+|+.+..+..+..+..+.+..... .+
T Consensus 215 ~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 284 (377)
T PRK11102 215 TAGPFVYIELNGVSPQNFG-YYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSAL---------LD 284 (377)
T ss_pred HcCHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH---------Hh
Confidence 4555554 55788888877 7788888999999999999999999999888777654443333222210 01
Q ss_pred chhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHH-HHHHHHHHH
Q 010323 386 GNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGF-LFTFLIAQT 444 (513)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~~~~~~~~~ 444 (513)
...+.......+...+.+..... ......|..| +.++++.++.+.... ++..+++.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 285 LGFWALVVGVAAFVGCVSMISSN-AMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHH-HHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333333333333332222 2334457666 788999998877654 444444433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=235.96 Aligned_cols=346 Identities=13% Similarity=0.126 Sum_probs=225.8
Q ss_pred ccccccccchhHHHHHHHHHHH-HHHHHHHHhHHHhhhhhhHHHH-HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhh
Q 010323 70 HISNYCKFDSQLLTSFTSSLYI-AGLIASLFASSVTRAFGRRASI-LVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGI 147 (513)
Q Consensus 70 ~i~~~~~~s~~~~~~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~ 147 (513)
.+++++|++.+++|++.+...+ ++.++.+++++ +||+||||.+ ..+.++.+++.++.+++++++.+++.+.+.|...
T Consensus 41 ~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 119 (393)
T PRK15011 41 FLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFG 119 (393)
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3467789999999999877655 55555555555 9999999875 5566666788888889999998876655555445
Q ss_pred hhhhhcccccceeeccCCCCCc--cchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhh-ccc
Q 010323 148 GFANQASSVPLYLSEMAPPRHR--GAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGA-LFL 224 (513)
Q Consensus 148 ~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~ 224 (513)
+...|. ...++.|+.++++| +...++...+.++|.+++|++++.+.+. .|||..|++.++..++..+.. +++
T Consensus 120 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~---~gw~~~f~~~~~~~~~~~~~~~~~~ 194 (393)
T PRK15011 120 STANPQ--MFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG---FSFTVMYLSAAVAFIVCGVMVWLFL 194 (393)
T ss_pred HhhHHH--HHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---cChHHHHHHHHHHHHHHHHHHHhhc
Confidence 566777 77788888776655 3455788889999999999999887653 589999999888777665544 457
Q ss_pred CCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhh
Q 010323 225 PETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINV 304 (513)
Q Consensus 225 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (513)
||+++. +++ + +++....+ +.. +..+...... ......+..
T Consensus 195 ~~~~~~---~~~--~-----------------------------~~~~~~~~----~~~-~~~~~~~~~~-~~~~~~~~~ 234 (393)
T PRK15011 195 PSMRKE---LPL--A-----------------------------TGTLEAPR----RNR-RDTLLLFVIC-TLMWGTNSL 234 (393)
T ss_pred CccCCC---Ccc--c-----------------------------cccccccc----ccc-ccHHHHHHHH-HHHHHHHHH
Confidence 876421 000 0 00000000 000 1111111111 222223344
Q ss_pred hHhcHHHHHH-hcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCC
Q 010323 305 IGFYAPVLFR-TIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGF 383 (513)
Q Consensus 305 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (513)
...+.|.+++ +.+.++.+.+ .......+..+++.++.|+++||++||+.+..+.....+....+...
T Consensus 235 ~~~~~p~~l~~~~~~~~~~~g-~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----------- 302 (393)
T PRK15011 235 YIINMPLFIINELHLPEKLAG-VMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA----------- 302 (393)
T ss_pred HHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 5557777764 5788887777 55566667778899999999999999998776555444333222211
Q ss_pred CcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHH
Q 010323 384 SKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGW 463 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (513)
++.+.......+.+++.+...+.. ..+..|..|+ .++++.++.+...++|..+++.+.|.+.+..++...+....+
T Consensus 303 --~~~~~~l~~~~l~~~~~g~~~~~~-~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~ 378 (393)
T PRK15011 303 --HSPAILLGLQLLNAIYIGILGGIG-MLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALV 378 (393)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 223333333333333333222222 3344688885 589999999999999999999999999998887666666666
Q ss_pred HHHHHHHHHhhccc
Q 010323 464 VVVMTTFVHFFLPE 477 (513)
Q Consensus 464 ~~~~~~~~~~~~~~ 477 (513)
+.+.+.+..+..||
T Consensus 379 ~~~~~~~~~~~~~~ 392 (393)
T PRK15011 379 MIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHhhcC
Confidence 66666666666554
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=241.30 Aligned_cols=346 Identities=12% Similarity=0.092 Sum_probs=243.2
Q ss_pred HHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhh
Q 010323 29 VAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFG 108 (513)
Q Consensus 29 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G 108 (513)
++++..+..|++....++. .|.+++++|++..+.|++.+.+++++.+++++.|++.||+|
T Consensus 7 ~~~~~f~~~G~~~~~~~~l--------------------~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G 66 (410)
T TIGR00885 7 LITSLFALWGFANDITNPM--------------------VPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLS 66 (410)
T ss_pred HHHHHHHHHHHHHHhHHHH--------------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445556777777666555 45567788999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhh---chhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHH
Q 010323 109 RRASILVGGAAFLAGSALGGA---ALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGIL 185 (513)
Q Consensus 109 rr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 185 (513)
||+++..+.++++++.+++.. .++++.+++.|++.|+|.|...+. ...++.+..|+++|++.+++.+...++|..
T Consensus 67 ~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~ 144 (410)
T TIGR00885 67 YKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETA--ANPYILVMGPESTATRRLNLAQSFNPFGSI 144 (410)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhh--hhHHHHHHCCHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988644 468999999999999999999998 888999999999999999999999999999
Q ss_pred HHHHHHhhhcccC-----------------------CccchHHHHHhhHHHHHHHHHhhcc--cCCChHHHHHhCCcHHH
Q 010323 186 AASLINYGTQKIK-----------------------GGWGWRISLAMAAAPALILTLGALF--LPETPNSIIQRSNDLQR 240 (513)
Q Consensus 186 ~~~~l~~~~~~~~-----------------------~~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~ 240 (513)
+++.++..+.... +..+||++|++.+++.++..+...+ .||.++ ++ +
T Consensus 145 ~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~---~ 216 (410)
T TIGR00885 145 IGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD---A 216 (410)
T ss_pred HHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc---c
Confidence 9999987664221 1136999999888877665544333 443211 00 0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcC--C
Q 010323 241 AKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIK--L 318 (513)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~ 318 (513)
++...+.+.++.+++ +.++...+..++..........+.+.+.++.+ .
T Consensus 217 --------------------------~~~~~~~~~~~~~~~----~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~ 266 (410)
T TIGR00885 217 --------------------------KQISFSASLSRLARI----RHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGM 266 (410)
T ss_pred --------------------------ccccchhhHHHHHhC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 000000112222222 22222333333344444455566777776543 3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHH
Q 010323 319 SESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVY 398 (513)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (513)
+...+. ...........+|+++++++.||+++|+.+.+...+..+..++.... +. ........+.
T Consensus 267 ~~~~a~-~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~-------------~~-~~~~~~l~~~ 331 (410)
T TIGR00885 267 TAGFAA-NYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA-------------GG-HVGLYCLTLC 331 (410)
T ss_pred CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-------------CC-hHHHHHHHHH
Confidence 333333 34455557788999999999999999998887777766666655542 12 2234555666
Q ss_pred HHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhc
Q 010323 399 VAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHF 452 (513)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 452 (513)
+++.+..+ |.......+..+++.+..+.++.... +|+++.|++.|.+.|..
T Consensus 332 glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 332 SAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMK 382 (410)
T ss_pred HHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHh
Confidence 66666676 44455556888876654455554443 99999999999999964
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-29 Score=245.18 Aligned_cols=353 Identities=13% Similarity=0.100 Sum_probs=238.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhHHHhhhh-----hhHHH-HHHHHHHHHHHHHHhhhc---hhHHHHHHHHHHHHh
Q 010323 75 CKFDSQLLTSFTSSLYIAGLIASLFASSVTRAF-----GRRAS-ILVGGAAFLAGSALGGAA---LNIYMLIFGRVLLGV 145 (513)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~Gi 145 (513)
.|.+..+++.+ +.....+ ++.+++|+++||+ ||||. +..+.++.+++..++++. ++++.+.+.|++.|+
T Consensus 42 ~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~ 119 (491)
T PRK11010 42 ENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAF 119 (491)
T ss_pred CCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 36788889887 3344444 6899999999999 99985 667777777777777665 478899999999999
Q ss_pred hhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccC
Q 010323 146 GIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLP 225 (513)
Q Consensus 146 ~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 225 (513)
+.+...+. ..+++.|++|+++|+++.++...+..+|.++++.++..+.+. ..|||..|++.+++.++..+..+++|
T Consensus 120 ~~a~~~i~--~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~--~~GWr~~f~i~a~l~ll~~l~~~~~~ 195 (491)
T PRK11010 120 CSASQDIV--FDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR--YLGWQGMYWLMAALLIPCIIATLLAP 195 (491)
T ss_pred HHHHHHHH--HHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99988888 889999999999999999999999999999999888777652 24899999999888777666655678
Q ss_pred CChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhh
Q 010323 226 ETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVI 305 (513)
Q Consensus 226 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (513)
|+++.. +.+ ++ . + ++...++++.++++...... ....... ......
T Consensus 196 e~~~~~--~~~--~~----------------~-~---------~~~~~~l~~~~~~~~~~~~l---l~~~l~~-~~~~~~ 241 (491)
T PRK11010 196 EPTDTI--PVP--KT----------------L-E---------QAVVAPLRDFFGRNNAWLIL---LLIVLYK-LGDAFA 241 (491)
T ss_pred CCcccc--ccc--cc----------------h-h---------hhHHHHHHHHHcCcCHHHHH---HHHHHHH-HHHHHH
Confidence 865310 000 00 0 0 00011233444332211111 1111111 222233
Q ss_pred HhcHHHH-HHhcCCCchhHHHHHH-HHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCC
Q 010323 306 GFYAPVL-FRTIKLSESTSLLMSA-VVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGF 383 (513)
Q Consensus 306 ~~~~~~~-~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (513)
..+.+.+ .++.|++..+.+ ... ....++.+++.+++|+++||+++|+.+.++..+..+..+.+.....
T Consensus 242 ~~~~~~~l~~~~G~s~~~~g-~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~--------- 311 (491)
T PRK11010 242 MSLTTTFLIRGVGFDAGEVG-LVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI--------- 311 (491)
T ss_pred HHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 3344444 466899998888 554 4556789999999999999999988877666554544433322111
Q ss_pred CcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHH
Q 010323 384 SKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGW 463 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (513)
..++.+......++..++.+...... ..+..+..|++.+++..|+.+....+|..+++.+.|.+.|..|+...+.+..+
T Consensus 312 ~~~~~~~l~~~~~l~~~~~g~~~~~~-~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~ 390 (491)
T PRK11010 312 TDKNLYSMGAAVFFENLCGGMGTAAF-VALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVA 390 (491)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 11222222223333222223332222 44456888888899999999999999999999999999999998777776666
Q ss_pred HHHHHHHHHhhcccC
Q 010323 464 VVVMTTFVHFFLPET 478 (513)
Q Consensus 464 ~~~~~~~~~~~~~~~ 478 (513)
+.+.+++.....+++
T Consensus 391 ~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 391 AAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHhc
Confidence 666666666655543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=234.91 Aligned_cols=327 Identities=17% Similarity=0.131 Sum_probs=233.8
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhh
Q 010323 68 DTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGI 147 (513)
Q Consensus 68 ~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~ 147 (513)
.|.+.+++|+|.++.+++.+.+.++..+++++.|+++||+|||+++.++.++..++.+.+ .+++++.+++.|++.|++.
T Consensus 23 lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~ 101 (355)
T TIGR00896 23 LPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGI 101 (355)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHH
Confidence 456678889999999999999999999999999999999999999999999988888877 7889999999999999999
Q ss_pred hhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCC
Q 010323 148 GFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPET 227 (513)
Q Consensus 148 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 227 (513)
+...+. ...++.|+++ ++|++++++...+.++|..+++.+++.+.+..+ .+||+.|.+.++..++... .++|+.
T Consensus 102 ~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~-~~w~~~f~~~~~~~~~~~~--~~~~~~ 175 (355)
T TIGR00896 102 AIINVL--LPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG-GHWQQALAWWALPALLALL--AWIPQV 175 (355)
T ss_pred HHHhcc--chHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHH--HHhhhh
Confidence 988877 7788889886 689999999999999999999988776654322 2499998877665443322 223433
Q ss_pred hHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHh
Q 010323 228 PNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGF 307 (513)
Q Consensus 228 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (513)
++ +++ ++++..+.+.++.+++ +.++...+..++....+.....
T Consensus 176 ~~----~~~-----------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 218 (355)
T TIGR00896 176 RR----RVA-----------------------------ANQTTTRLTPVRIWRS----PLAWQVTVFFGLQSGLYYSLIG 218 (355)
T ss_pred cc----ccC-----------------------------CCCCCCCCCCchhhcC----HhHHHHHHHHHHHHHHHHHHHH
Confidence 21 000 0000001122333322 2333333333444444556677
Q ss_pred cHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccC-cchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 010323 308 YAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLG-RKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKG 386 (513)
Q Consensus 308 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (513)
+.|.++++.|.+..+.+ .......++.++++++.|++.||++ ||+.+..+..+..++.+.+.+. + .
T Consensus 219 ~lp~~~~~~g~~~~~~g-~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~ 285 (355)
T TIGR00896 219 WLPAILISHGASAATAG-SLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA-----------P-M 285 (355)
T ss_pred HHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh-----------h-h
Confidence 88999988899888877 7888889999999999999999995 5556666666666655544432 1 1
Q ss_pred hhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc
Q 010323 387 NAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK 453 (513)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (513)
. .... ...+.+++.+..++........+..+++.++...++.+..++++..++|.+.|.+.|+.+
T Consensus 286 ~-~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 286 H-GLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred h-HHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 1111 334555555444332222222244456778899999999999999999999999999886
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=237.63 Aligned_cols=332 Identities=11% Similarity=0.062 Sum_probs=233.8
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhh
Q 010323 71 ISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFA 150 (513)
Q Consensus 71 i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~ 150 (513)
+++++|++..+.|++.+.+.+++.+++++.|+++||+|||++++++.++.+++.++.+++++++.+++.|++.|.+.+..
T Consensus 34 l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 113 (395)
T PRK10054 34 LSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVF 113 (395)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred hhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhh-cccCCChH
Q 010323 151 NQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGA-LFLPETPN 229 (513)
Q Consensus 151 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~ 229 (513)
.+. ...+..|..|+++|+++.++.....++|..++|.+++.+.. .+||..|++.++..++..+.. +++||+++
T Consensus 114 ~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~----~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 187 (395)
T PRK10054 114 STV--LKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM----QSINLPFWLAAICSAFPLVFIQIWVQRSEK 187 (395)
T ss_pred HHH--HHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCcHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777 88889999999999999999999999999999999998764 479999998887776655443 33555431
Q ss_pred HHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcH
Q 010323 230 SIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYA 309 (513)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (513)
. +++ .+ + + ....++.++++. .+... +..++..........+.
T Consensus 188 ~---~~~-~~--------------------~-----~-----~~~~~~~~~~~~---~~~~~-~~~~l~~~~~~~~~~~~ 229 (395)
T PRK10054 188 A---IAT-ET--------------------G-----S-----VWSPSVLLQDKA---LLWFT-CSGFLASFVSGAFASCI 229 (395)
T ss_pred c---ccc-ch--------------------h-----h-----hhhhhhhccCce---ehHHH-HHHHHHHHHHHHhhhhH
Confidence 0 000 00 0 0 000122222221 11111 11221111122222344
Q ss_pred HHHHH---hcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 010323 310 PVLFR---TIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKG 386 (513)
Q Consensus 310 ~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (513)
+.+.. +.+.+....+ .......+.........+++.||.++|+.+..+..+..++...+... .+
T Consensus 230 ~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------~~ 296 (395)
T PRK10054 230 SQYVMVVADSDFAEKVVA-VVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS------------GN 296 (395)
T ss_pred HHHHHHhcccchHHHHHH-HHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc------------ch
Confidence 44442 2344444444 55555656666677788999999999998888877766666555432 12
Q ss_pred hhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHH
Q 010323 387 NAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFG 461 (513)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (513)
+.+...+...+++.+.... .|.....+.+..|++.++++.+..+ ..++|..++|.+.|.+.|+.++...+...
T Consensus 297 ~~~~~~~~~~~~~~g~~~~-~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~ 369 (395)
T PRK10054 297 SLLLWGMSAAVFTVGEIIY-APGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVIL 369 (395)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHH
Confidence 3444445556666665433 3444556678899999999988655 67789999999999999999865554443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-28 Score=233.36 Aligned_cols=327 Identities=16% Similarity=0.160 Sum_probs=226.2
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhh
Q 010323 69 THISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIG 148 (513)
Q Consensus 69 ~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~ 148 (513)
|.+.+++|+|+.+.+++.+.+.++..++++++|+++||+|||+++..+..+..++.+++.++++++.+++.|++.|++.+
T Consensus 32 ~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 111 (394)
T PRK11652 32 ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTG 111 (394)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Confidence 34466778999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHH-hhcccCCC
Q 010323 149 FANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTL-GALFLPET 227 (513)
Q Consensus 149 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~ 227 (513)
...+. ...+..|.+++++|+++.+....+..+|..++|.+++.+.+. .+||+.|++.++..++..+ ..++.||+
T Consensus 112 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (394)
T PRK11652 112 VGGVM--ARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL---FGWRACYLFLLLLGAGVTFSMARWMPET 186 (394)
T ss_pred HHHHH--HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 87777 777889999999999999999999999999999998877553 5799999998877665443 34557876
Q ss_pred hHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHh
Q 010323 228 PNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGF 307 (513)
Q Consensus 228 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (513)
++.. ++ .++ .+.++++.++++..+... +..+........+..
T Consensus 187 ~~~~---~~-~~~------------------------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 228 (394)
T PRK11652 187 RPAD---AR-RTR------------------------------VLASYRTLLSNRRFNCYL----LMLIGTLAGIAVFEA 228 (394)
T ss_pred Cccc---cc-hhH------------------------------HHHHHHHHHcChHHHHHH----HHHHHHHHHHHHHHH
Confidence 4210 00 000 001122222222111111 111222222333344
Q ss_pred cHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 010323 308 YAPVLFRT-IKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKG 386 (513)
Q Consensus 308 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (513)
+.+.++++ .|.+..+.+ .......++.+++..+.+++.||.+++.... .....++...+...... ...
T Consensus 229 ~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~ 297 (394)
T PRK11652 229 CSGVLMGAVLGLSSMTVS-ILFILPIPAAFFGAWFAGRPNKRFSTLMWQS--VICCLLAGLLMWIPGWF--------GVM 297 (394)
T ss_pred hChHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh--------ccc
Confidence 45556655 788887777 6666677788888888888888887333222 22222222221111000 112
Q ss_pred hhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHh
Q 010323 387 NAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCH 451 (513)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 451 (513)
+.+.......+.+.+.+...+ ....+..|..| +.++++.++.+....+|+.+++.+.+.+.+.
T Consensus 298 ~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 298 NVWTLLVPAALFFFGAGMLFP-LATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 344455555666666665543 33444467777 6789999999999999999999988876554
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=235.80 Aligned_cols=326 Identities=15% Similarity=0.144 Sum_probs=219.7
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHhhhhh
Q 010323 71 ISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAAL-NIYMLIFGRVLLGVGIGF 149 (513)
Q Consensus 71 i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~Gi~~~~ 149 (513)
+++++|+|..+.+++.+.+.+++.++++++|+++||+|||+.+.++.++..++.+++++++ +++.+++.|+++|++.+.
T Consensus 28 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 107 (366)
T TIGR00886 28 IKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS 107 (366)
T ss_pred HHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh
Confidence 5778899999999999999999999999999999999999999999999999999999999 999999999999998654
Q ss_pred hhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccC-------CccchHHHH-HhhHHHHHHHH-Hh
Q 010323 150 ANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIK-------GGWGWRISL-AMAAAPALILT-LG 220 (513)
Q Consensus 150 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~-------~~~~wr~~f-~~~~~~~~~~~-~~ 220 (513)
.+. ...+++|++|+++|++++++.....++|..+++.++..+.... +..+||+.| +..+++..+.. +.
T Consensus 108 -~~~--~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 184 (366)
T TIGR00886 108 -FAS--CMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLI 184 (366)
T ss_pred -hHh--HHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHH
Confidence 455 6778999999999999999999777777777776665443210 124799999 44454444433 33
Q ss_pred hcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhc
Q 010323 221 ALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVT 300 (513)
Q Consensus 221 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (513)
..+.+|+|+.. ++ .++.+. + .... .. +++.....++.++++ .++...+..+....
T Consensus 185 ~~~~~~~~~~~---~~-~~~~~~--~---~~~~-~~-----------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 239 (366)
T TIGR00886 185 FFVGADTPPGK---PA-TGKLSF--K---GARW-SV-----------GTGALGDQLKVFRDR----HTWILALLYSVTFG 239 (366)
T ss_pred HHhcccCCccc---cc-chhccc--c---cccc-cc-----------cchhHHHHHHHHhcc----chhhHHHHHHHHHH
Confidence 44466665311 00 000000 0 0000 00 000000122222221 12223333333333
Q ss_pred chhhhHhcHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCC
Q 010323 301 GINVIGFYAPVLFRT-IKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGD 379 (513)
Q Consensus 301 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (513)
.......+.|.++++ .|.++.+.+ .......+..++++++.+++.||+++|+....+......+..++....
T Consensus 240 ~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~------ 312 (366)
T TIGR00886 240 SFLGVSSIFAMFFKDQFGLSKVTAG-AYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGL------ 312 (366)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcC------
Confidence 445566777777754 688888777 777778888999999999999999999887777666655555544321
Q ss_pred CCCCCcc-hhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHH
Q 010323 380 QGGFSKG-NAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLF 437 (513)
Q Consensus 380 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~ 437 (513)
..+ +.+.......+...+.+...+. .+..+.+..| +++|++.|+.+..+++|
T Consensus 313 ----~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 313 ----VSPLSLAVFIVLFVALFFFSGAGNGS-TFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred ----CCcchHHHHHHHHHHHHHHhccccch-hhhcchhhch-hhcccHHHHHHHhccCC
Confidence 111 3333344444444455554443 3555578777 68999999999887765
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=227.95 Aligned_cols=334 Identities=14% Similarity=0.105 Sum_probs=241.3
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHH----HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhh
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASI----LVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGI 147 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l----~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~ 147 (513)
.+++|+|.+++|++.+++.+...++++++|+++||+|||+.. ..+..+..+ ..+.++++++.+++.|+++|.+.
T Consensus 31 l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~ 108 (382)
T TIGR00902 31 LKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFF 108 (382)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999999999999985433 333322222 24456789999999999999998
Q ss_pred hhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCC
Q 010323 148 GFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPET 227 (513)
Q Consensus 148 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 227 (513)
+...|. ..++..++ +++|++..+......++|.+++|++++.+.+. +|||..|++..+..++..+. +.++|+
T Consensus 109 ~~~~p~--~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~---~g~~~~f~~~~~~~~~~~~~-~~~~~~ 180 (382)
T TIGR00902 109 SAGMPI--GDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM---FDEQNILAILTAGLAFMLIG-FLIKPT 180 (382)
T ss_pred ccchhH--HHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHHHHHHH-HHcCCC
Confidence 888887 77776654 47889999999999999999999998887664 57999998876553333332 233333
Q ss_pred hHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHh
Q 010323 228 PNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGF 307 (513)
Q Consensus 228 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (513)
++. +++ ++ +.+++...+.++.+|+ +.++...+..++..........
T Consensus 181 ~~~---~~~--~~-------------------------~~~~~~~~~~~~~l~~----~~~~~~l~~~~l~~~~~~~~~~ 226 (382)
T TIGR00902 181 IPP---KDA--IP-------------------------EDESQGDSAFIALLKN----PMNLRFLAAVCLIQGAHAAYYG 226 (382)
T ss_pred CCC---Ccc--cc-------------------------ccccccchhHHHHHcC----hHHHHHHHHHHHHHHHHHHHHH
Confidence 210 000 00 0000001122333332 2233333334444445566666
Q ss_pred cHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcch
Q 010323 308 YAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGN 387 (513)
Q Consensus 308 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (513)
+.|.++++.|.++.+.+ .......+..+++..+.+++.||+++|+.+.++.....+....+... ++
T Consensus 227 ~~~~~l~~~g~s~~~~g-~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-------------~~ 292 (382)
T TIGR00902 227 FSAIYWQAAGISASATG-LLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI-------------EA 292 (382)
T ss_pred HHHHHHHHCCCCHhHHH-HHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-------------hh
Confidence 78888888999998888 77778889999999999999999999999999888888887776553 55
Q ss_pred hHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHH-HHHHHHHHHHHHhHHHHHhcchhhhHHHHHHHH
Q 010323 388 AYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVA-VGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVV 465 (513)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (513)
.+..+....+.++.++...... ..++++. |++.++++.++++. ...+|..+++.+.|.+.|+.+...++..+++.+
T Consensus 293 ~~~~~~~q~l~g~~~~~~~~~~-~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~ 369 (382)
T TIGR00902 293 FPLIFLLQILHCGTFAVCHLAA-MRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAA 369 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6667777788888887766554 5565677 99999999999874 567899999999999999998766665555444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=224.37 Aligned_cols=355 Identities=12% Similarity=0.049 Sum_probs=230.2
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhh-HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhh
Q 010323 70 HISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGR-RASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIG 148 (513)
Q Consensus 70 ~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~ 148 (513)
.+++++|++..++|++.+++.++..++++++|.++||+|| |+++.++.++..++..+..+.++++.+++.|++.|++.+
T Consensus 28 ~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 107 (418)
T TIGR00889 28 YMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYM 107 (418)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHc
Confidence 3456778899999999999999999999999999999965 788898999998888888999999999999999999876
Q ss_pred hhhhccccccee----e----ccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHh
Q 010323 149 FANQASSVPLYL----S----EMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLG 220 (513)
Q Consensus 149 ~~~~~~~~~~~i----~----~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 220 (513)
...+. ..++. . |......|.+..| .+|.++++.+++.+... ..|+. |++.++..++..+.
T Consensus 108 ~~~~~--~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~---~~~~~-f~~~~~~~~~~~~~ 175 (418)
T TIGR00889 108 PTIAL--TNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIE---LSNIQ-LYITAGSSALLGVF 175 (418)
T ss_pred cHHHH--HHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhccc---chhHH-HHHHHHHHHHHHHH
Confidence 66655 44332 1 2233334555555 35777777777765321 23553 55555555555555
Q ss_pred hcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhc
Q 010323 221 ALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVT 300 (513)
Q Consensus 221 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (513)
.+++||+|+...+++. + .. +..+.+.++.+|++. ++...+..++...
T Consensus 176 ~~~~~e~~~~~~~~~~----------------~-------~~------~~~~~~~~~~~k~~~----~~~~~~~~~~~~~ 222 (418)
T TIGR00889 176 ALTLPDIPVAKSTAKM----------------S-------IK------VMLGLDAFILFKNKR----MAIFFFFSMLLGA 222 (418)
T ss_pred HhcCCCCCCCcccccc----------------C-------HH------HHhhhhHHHHhcCCC----eeeHHHHHHHHHh
Confidence 5678887531000000 0 00 000011122332221 1112222222222
Q ss_pred chhhhHhcHHHHHHhcCCCc--------hhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHH
Q 010323 301 GINVIGFYAPVLFRTIKLSE--------STSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSI 372 (513)
Q Consensus 301 ~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 372 (513)
.......+.+.++++.|.++ ...+ .......+..+++.+..+++.||+|+|+.+..+.++..++...+...
T Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g-~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~ 301 (418)
T TIGR00889 223 PLQITNIFGNGFLHEFGRNPEFADSFVVKNAS-IWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG 301 (418)
T ss_pred HHHHHHHhHHHHHHHhcccccccchhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 22334455677777766554 3334 77777888899999999999999999999998888777776555442
Q ss_pred HHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHH-HHHHHHHHHHHHHhHHHHHh
Q 010323 373 MENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINV-AVGFLFTFLIAQTFLAMLCH 451 (513)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 451 (513)
.. .....+..+...++.+.+.+... +....++.|.+|++.|+++.|+.+ ....+|..++|.+.|.+.++
T Consensus 302 ~~---------~~~~~~~l~l~~~l~g~~~~~~~-~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~ 371 (418)
T TIGR00889 302 DP---------EYFGYALLFLSMIVYGCAFDFFN-ISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEK 371 (418)
T ss_pred Cc---------chhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 00 00112334444555655555443 343455689999999999999997 56789999999999999998
Q ss_pred cc------hh-hhHHHHHHHHHHHHHHHhhcccCCC
Q 010323 452 FK------AG-IFFFFGGWVVVMTTFVHFFLPETKN 480 (513)
Q Consensus 452 ~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (513)
.+ +. .+...+++..+.+++..++++|+.+
T Consensus 372 ~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 372 MFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred hccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 54 33 3445555556666666667776543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-26 Score=219.13 Aligned_cols=330 Identities=13% Similarity=0.058 Sum_probs=226.6
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhH----HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhh
Q 010323 73 NYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRR----ASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIG 148 (513)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~ 148 (513)
+|+|.|..++|++.+++.++..++++++|+++||+||| +.+.++..+. .......+++++.+++.|++.|++.+
T Consensus 32 ~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~ 109 (382)
T PRK11128 32 KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFS 109 (382)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHc
Confidence 44678999999999999999999999999999999984 3333332222 22334456889999999999999988
Q ss_pred hhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCCh
Q 010323 149 FANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETP 228 (513)
Q Consensus 149 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 228 (513)
...+. ..++..++ +++|+++.+......++|..+||.+++.+.+. +|||..|++.++..++..+...+.||.+
T Consensus 110 ~~~~~--~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 182 (382)
T PRK11128 110 PLVPL--TDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW---FGEQAILWILTAGVASMLLGQLLRPTIM 182 (382)
T ss_pred ccccH--HHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHHHHHHHHHccCCCC
Confidence 88887 77777766 35688889999999999999999999988664 5799999887765554444444455532
Q ss_pred HHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhc
Q 010323 229 NSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFY 308 (513)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (513)
+ +++ .+ +..++...+++++++++ .++...+..+...........+
T Consensus 183 ~----~~~-~~--------------------------~~~~~~~~~~~~i~~~~----~~~~~~~~~~l~~~~~~~~~~~ 227 (382)
T PRK11128 183 P----QGE-SR--------------------------QQESAGWPAWKALLKEP----TVWRFLLCVSLLQGSHAAYYGF 227 (382)
T ss_pred C----ccc-cc--------------------------cccccccchHHHHHcCh----hHHHHHHHHHHHHHHhHhHHHH
Confidence 1 000 00 00000112344444332 2332222222222333445556
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchh
Q 010323 309 APVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNA 388 (513)
Q Consensus 309 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (513)
.|.+.++.|.+..+.+ .......+..++...+.+++.||+++|+.+..+.....+..+.+... ++.
T Consensus 228 ~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~ 293 (382)
T PRK11128 228 SAIYWQAAGYSASTIG-YLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST-------------TAL 293 (382)
T ss_pred HHHHHHHCCCCHhHHH-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-------------hhH
Confidence 6777788898887777 66677778888999999999999999999888887777766555432 455
Q ss_pred HHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHH-HHHHHHHHHHHhHHHHHhcchhhhHHHHH
Q 010323 389 YLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAV-GFLFTFLIAQTFLAMLCHFKAGIFFFFGG 462 (513)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (513)
+..++..++.+++.+...... ..+..+. +++++++..+..+.. ...|..++|.+.|.+.|..+...++..++
T Consensus 294 ~~~~~~~~l~g~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~~ 366 (382)
T PRK11128 294 PWLIVIQILHCGTFTVCHLAA-MRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMAL 366 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 666666777777666554333 4444565 566678888887644 45677899999999999988754444333
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=222.60 Aligned_cols=354 Identities=12% Similarity=0.060 Sum_probs=211.5
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhh---hchhHH-HHHHHHHHHHhhh
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGG---AALNIY-MLIFGRVLLGVGI 147 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~-~l~~~r~l~Gi~~ 147 (513)
++++|++..+.|++.+.+.++..++++++|+++||+|||++++++..+.+++..... .++... ......++.++..
T Consensus 38 ~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (420)
T PRK09528 38 HDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYL 117 (420)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556788999999999999999999999999999999999999887666554433221 111111 1111222233333
Q ss_pred hhhhhcccccceeeccCC--CCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhccc-
Q 010323 148 GFANQASSVPLYLSEMAP--PRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFL- 224 (513)
Q Consensus 148 ~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~- 224 (513)
+..... ....+.++.+ ++++++..+......++|..+++.+++.+.+ .+|++.|++.+++.++..+..++.
T Consensus 118 ~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~ 191 (420)
T PRK09528 118 GFGFLA--GAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN----INPQINFWLGSGSALILLVLLFFAK 191 (420)
T ss_pred hhhhcc--chhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh----cCchHhHHHHHHHHHHHHHHHhccc
Confidence 322222 2223333333 3466778888888899999999999887764 379999999888777766555554
Q ss_pred CCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhh
Q 010323 225 PETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINV 304 (513)
Q Consensus 225 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (513)
+|+++....+++ ++ . ++++......++.++++. ++...+..+.....+..
T Consensus 192 ~~~~~~~~~~~~--~~----------~--------------~~~~~~~~~~~~~l~~~~----~~~l~l~~~~~~~~~~~ 241 (420)
T PRK09528 192 PDAPSTAKVANA--LG----------A--------------NASAVSLKDALALLKLPK----FWFLVLYVIGVACFYDV 241 (420)
T ss_pred ccccchhhhccc--hh----------c--------------ccccccHHHHHHHccCCC----eEeehHHHHHHHHHHHH
Confidence 333321000000 00 0 000000001112222221 11111111111112222
Q ss_pred hHhcHHHHHHh----cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCC
Q 010323 305 IGFYAPVLFRT----IKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQ 380 (513)
Q Consensus 305 ~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (513)
...+.|.++.+ .+.+..+.+ .......+...++.++.|++.||+++|+.+..+..+..+..+++.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-------- 312 (420)
T PRK09528 242 FDQQFPNFFASFFATPEQGTRVFG-YLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-------- 312 (420)
T ss_pred HHHHHHHHHHHHHhccCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc--------
Confidence 33334444432 244444455 66777778888999999999999999999888887777766665543
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHH-HHHHHHHHHHHHHHHhHHHHHhcchhhhHH
Q 010323 381 GGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSI-NVAVGFLFTFLIAQTFLAMLCHFKAGIFFF 459 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (513)
++.+.......+.+.+.+.... ....+..|.+|++.+++..+. .++...+|.++++.+.|.+.|..|+...+.
T Consensus 313 -----~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~ 386 (420)
T PRK09528 313 -----TGPLEVSILKLLHAFEVPFLLV-GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYL 386 (420)
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHH
Confidence 3344444444454444433322 223455788899999888765 567788999999999999999988665444
Q ss_pred H-HHHHHHHHHHHHhhcc
Q 010323 460 F-GGWVVVMTTFVHFFLP 476 (513)
Q Consensus 460 ~-~~~~~~~~~~~~~~~~ 476 (513)
. +++..+..++.....+
T Consensus 387 ~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 387 ILGGIVLLFTLISVFTLS 404 (420)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 4 4444444444444443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=227.52 Aligned_cols=334 Identities=15% Similarity=0.147 Sum_probs=225.9
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhh----hhhH-HHHHHHHHHHHHHHHHhhhchh------HHHHHHH
Q 010323 71 ISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRA----FGRR-ASILVGGAAFLAGSALGGAALN------IYMLIFG 139 (513)
Q Consensus 71 i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~ 139 (513)
+.+++|+++.++|++.++..+..++..|+.|+++|| +||| +.++.+..+.+++.+++.+.++ ...+++.
T Consensus 26 ~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 105 (437)
T TIGR00792 26 YTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYIT 105 (437)
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Confidence 456778999999999999999999999999999997 6874 4677888888888888777654 4567778
Q ss_pred HHHHHhhhhhhhhcccccceeeccC-CCCCccchhhHHHHHHHHHHHHHHHHHhhhccc----CCccchHHHHHhhHHHH
Q 010323 140 RVLLGVGIGFANQASSVPLYLSEMA-PPRHRGAFNIGYELCTAIGILAASLINYGTQKI----KGGWGWRISLAMAAAPA 214 (513)
Q Consensus 140 r~l~Gi~~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~----~~~~~wr~~f~~~~~~~ 214 (513)
+++.+++.+...+. ..++..|.. ++++|++..++...+..+|..+++.+...+... .+..+||+.+.+.++++
T Consensus 106 ~~~~~~~~~~~~~~--~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~ 183 (437)
T TIGR00792 106 YILLGLFYSFVNIP--YWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIG 183 (437)
T ss_pred HHHHHHHHHhhccc--HhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHH
Confidence 88999988877666 677888887 468899999999888888877766654433321 12358999999998887
Q ss_pred HHHHHhh-cccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHH
Q 010323 215 LILTLGA-LFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILI 293 (513)
Q Consensus 215 ~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (513)
++..+.. ++.||+++. .+ + +++++.+.++.++...+++.++...+
T Consensus 184 ~~~~~~~~~~~~e~~~~----~~--~----------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (437)
T TIGR00792 184 VVSLIICFFGTKERYSE----IP--K----------------------------NIEKKLSLKQIFKALFKNDQLLILCL 229 (437)
T ss_pred HHHHHHHHcCCEecCCC----CC--c----------------------------ccccCCCHHHHHHHHhCCHHHHHHHH
Confidence 7765544 457775410 00 0 00001122222222222333333333
Q ss_pred HHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHH
Q 010323 294 PFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIM 373 (513)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 373 (513)
..+...........+.+++.+....+....+ .......++.+++.++.+++.||+|+|+.+..+..+..++.+.+.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~- 307 (437)
T TIGR00792 230 AYLFYNLAFNIKNGVQVYYFTYVLGDPELFS-YMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA- 307 (437)
T ss_pred HHHHHHHHHHHHcchhheeEeeecCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-
Confidence 3333333334444444555443222344444 55666788899999999999999999999988877777666554432
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCC-------hhhhhhHhHHHHHHHHHHHHHHHHHhH
Q 010323 374 ENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFP-------LEIRSAGQSINVAVGFLFTFLIAQTFL 446 (513)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~~~~~~~~ 446 (513)
+ ++.+...+..++.+++.+... +..+.+.+|..+ ++.+|...|+.+....++..+++.+.|
T Consensus 308 ----------~-~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g 375 (437)
T TIGR00792 308 ----------G-SNLPLILVLIILAGFGQNFVT-GLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVG 375 (437)
T ss_pred ----------c-hhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 233444445555555555443 344555566654 456799999999999999999999999
Q ss_pred HHHHhcch
Q 010323 447 AMLCHFKA 454 (513)
Q Consensus 447 ~~~~~~~~ 454 (513)
.+.+..|+
T Consensus 376 ~ll~~~G~ 383 (437)
T TIGR00792 376 LILGIIGY 383 (437)
T ss_pred HHHHHcCC
Confidence 99987654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-28 Score=233.97 Aligned_cols=384 Identities=17% Similarity=0.212 Sum_probs=274.7
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHH-HHHHHhhhh
Q 010323 70 HISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFG-RVLLGVGIG 148 (513)
Q Consensus 70 ~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-r~l~Gi~~~ 148 (513)
+++++++.+.++++|+.++....+.+.+|+.+.+.||+|.|++.+.|.++..++.++.+|++++|++++. -++.|+|.|
T Consensus 71 ~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~ 150 (509)
T KOG2504|consen 71 ELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLG 150 (509)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccch
Confidence 4466777789999999999999999999999999999999999999999999999999999999988876 788999999
Q ss_pred hhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhccc-CCC
Q 010323 149 FANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFL-PET 227 (513)
Q Consensus 149 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~ 227 (513)
..+.. ...++..+|+ |+|+.+.|+...+.++|..+-|.+...+.+ +.|||+.+++.+.+.+-..+....+ |.+
T Consensus 151 ~~~~p--aiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~---~~G~r~~~l~~~~~~l~~~~~~~~~rp~~ 224 (509)
T KOG2504|consen 151 LIYLP--AVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLS---KYGWRGALLIFGGISLNVLVAGALLRPLS 224 (509)
T ss_pred hhhcc--hhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHH---HhCcHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99988 8888887776 899999999999999999998888555443 3689999999888876655554443 322
Q ss_pred hHHHHHhCCcHHHHHHHH-------HHHh-CCC-chHH----HHHHHHHHHHhhhhcCCcchhhc----ccCchhHHHHH
Q 010323 228 PNSIIQRSNDLQRAKQML-------QRIR-GTD-DVEA----EFDDLIKASSIAKTVNHPFKKII----QRKYRPQLVMA 290 (513)
Q Consensus 228 p~~~~~~~~~~~~~~~~~-------~~~~-~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 290 (513)
++....+.++.+...+.. ++.. ..+ .... +....++..++.. ..+.+..+ .+..+.+.++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~ll~~~~fl~ 302 (509)
T KOG2504|consen 225 PPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWR--NSPLQAFLSMLDLSLLKDPKFLL 302 (509)
T ss_pred cCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCcccc--ccchhhhhhhhhHHHHcCchHHH
Confidence 211000000000000000 0000 000 0000 0000000000000 00111111 13344567888
Q ss_pred HHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchH--HHHhHHHHHHHHHH
Q 010323 291 ILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVL--FLVGGIQMLAAQVM 368 (513)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~--~~~~~~~~~~~~~~ 368 (513)
+.+...+...++.....++|.+.++.+++..++. ...+..++..++++++.|++.|+...++. ..++.+..+++...
T Consensus 303 ~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa-~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~ 381 (509)
T KOG2504|consen 303 LALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAA-FLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLF 381 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhH-HHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHH
Confidence 8888888888889999999999999999999999 88999999999999999999999885443 44444444444433
Q ss_pred HHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHH
Q 010323 369 IGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAM 448 (513)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 448 (513)
+... .+.+......++++++.+.. ..+...++.|+.+.+.-..+.|+...+..++..++|++.|.+
T Consensus 382 ~p~~-------------~~~~~l~~~~~~fG~~~g~~-~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~ 447 (509)
T KOG2504|consen 382 LPFA-------------TTYVGLIVFSILFGFCVGSF-SSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLL 447 (509)
T ss_pred HHHh-------------ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceee
Confidence 3332 44556666666666665544 344445668999999999999999999999999999999999
Q ss_pred HHhcc-hhhhHHHHHHHHHHHHHHHhhcc
Q 010323 449 LCHFK-AGIFFFFGGWVVVMTTFVHFFLP 476 (513)
Q Consensus 449 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 476 (513)
.|..+ |...+.+++++.+.+...++..+
T Consensus 448 ~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 448 YDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 99988 77777777777777776666666
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=217.88 Aligned_cols=348 Identities=14% Similarity=0.104 Sum_probs=225.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhHHHhhhh-----hhHH-HHHHHHHHHHHHHHHhhhc---hhHHHHHHHHHHHHh
Q 010323 75 CKFDSQLLTSFTSSLYIAGLIASLFASSVTRAF-----GRRA-SILVGGAAFLAGSALGGAA---LNIYMLIFGRVLLGV 145 (513)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~-~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~Gi 145 (513)
.|+|.+++|++...... .+..+++|+++||+ |||| .+.++.++.+++....++. .+++.+++..++.++
T Consensus 29 ~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~ 106 (402)
T PRK11902 29 EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAF 106 (402)
T ss_pred cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 47899999999777775 68999999999999 8875 7888888888888777776 457888888888888
Q ss_pred hhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccC
Q 010323 146 GIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLP 225 (513)
Q Consensus 146 ~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 225 (513)
..+...+. ..+++.|+.|+++|+++.++...+..+|.++++.++..+.+.. .|||..|++.++..++..+..++.|
T Consensus 107 ~~~~~~~~--~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~--~gw~~~f~i~a~~~l~~~l~~~~~~ 182 (402)
T PRK11902 107 LSASQDIV--FDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV--LGWGNTYLLMAGLMLAGALTTLWAP 182 (402)
T ss_pred HHHHHHHH--HHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888888 8999999999999999999999999999999998877765421 4899999998887776655555677
Q ss_pred CChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhh
Q 010323 226 ETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVI 305 (513)
Q Consensus 226 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (513)
|+++.. +++ ++.+ ++.+.++++.++++..+.......+..... ....
T Consensus 183 e~~~~~--~~~--~~~~--------------------------~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~---~~~~ 229 (402)
T PRK11902 183 EPEVPA--RPP--RSLG--------------------------EAVVGPLRDFFSRRGAWALLLLIVLYKLGD---AFAG 229 (402)
T ss_pred CCcccc--ccc--chhH--------------------------HHHHHHHHHHHhCcCHHHHHHHHHHHHhHH---HHHH
Confidence 764310 000 0000 000112334444333222222222211111 1111
Q ss_pred HhcHHHHHHhcCCCchhHHHHHHHH-HHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010323 306 GFYAPVLFRTIKLSESTSLLMSAVV-TGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFS 384 (513)
Q Consensus 306 ~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (513)
....+++.++.|+++.+.+ ..... ..++.+++.++.+++.||+++|+.+..+..+..+..+.+..... .
T Consensus 230 ~~~~~~l~~~~G~~~~~~g-~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~---------~ 299 (402)
T PRK11902 230 SLSTTFLIRGAGFSAGEVG-IVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAV---------T 299 (402)
T ss_pred HHHHHHHHHhcCCCHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---------c
Confidence 2334455566888888777 55433 34568899999999999999998877666665554433322211 1
Q ss_pred cchhHHHHHHHH----HHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHH
Q 010323 385 KGNAYLILVLIC----VYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFF 460 (513)
Q Consensus 385 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (513)
+++.+....... ..+.+.+.. ......++.+.+|.+.+ +..+....++..+++.+.|.+.|..|+...+..
T Consensus 300 ~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~ 374 (402)
T PRK11902 300 PKHLWTMALAIGIENLCGGMGTAAF-VALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLM 374 (402)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 122333333322 222222222 23334555677775544 455555567777677789999999998776666
Q ss_pred HHHHHHHHHHHHhhcc
Q 010323 461 GGWVVVMTTFVHFFLP 476 (513)
Q Consensus 461 ~~~~~~~~~~~~~~~~ 476 (513)
+.++.+.+++.....+
T Consensus 375 ~~~~~~~~~~~~~~~~ 390 (402)
T PRK11902 375 TVVIALPGLALLWLMR 390 (402)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6666655555544443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-26 Score=248.63 Aligned_cols=327 Identities=12% Similarity=-0.001 Sum_probs=225.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhh---hchhHHHHHHHHHHHHhhhhhhhhcc
Q 010323 78 DSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGG---AALNIYMLIFGRVLLGVGIGFANQAS 154 (513)
Q Consensus 78 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~Gi~~~~~~~~~ 154 (513)
+....+++.+++.+++.++++++|+++||+|||++++++.++..++.++.. .+++++.+++.|+++|++.+...+.
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~- 123 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPA- 123 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchH-
Confidence 456689999999999999999999999999999999998877666555443 4578999999999999999999998
Q ss_pred cccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccC-----C-ccchHHHHHhhHHH-HHHHHHhhcccCCC
Q 010323 155 SVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIK-----G-GWGWRISLAMAAAP-ALILTLGALFLPET 227 (513)
Q Consensus 155 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~-----~-~~~wr~~f~~~~~~-~~~~~~~~~~~~e~ 227 (513)
..+++.|++|+++|++++++...+..+|.++|+++++++.... + ..+|++.+.+..+. .++.++..+.+||+
T Consensus 124 -~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1146)
T PRK08633 124 -KYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKV 202 (1146)
T ss_pred -HHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 8999999999999999999999999999999999998876541 0 11344444443333 33334445557877
Q ss_pred hHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHh
Q 010323 228 PNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGF 307 (513)
Q Consensus 228 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (513)
|+....+.+ ++. .. . .+.....++.+++++ .++...+..++..........
T Consensus 203 ~~~~~~~~~--~~~---------~~----~----------~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~ 253 (1146)
T PRK08633 203 PAAAPEVFD--KKK---------YL----F----------PKLLWRNLKLLRSDR----VLWLAIIGLSYFWFISQLAQA 253 (1146)
T ss_pred CCCCccccc--ccc---------cc----c----------HHHHHHHHHHHhcCc----HHHHHHHHHHHHHHHHHHHHH
Confidence 632111000 000 00 0 000011122333222 222222222222223334445
Q ss_pred cHHHHH-HhcCCCch-hHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 010323 308 YAPVLF-RTIKLSES-TSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSK 385 (513)
Q Consensus 308 ~~~~~~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (513)
+.|.++ +..|.+.. ..+ .......++.+++.++.+++.||+++++.+.++.++.+++.+++.+.
T Consensus 254 ~~~~~~~~~~g~s~~~~~g-~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------- 319 (1146)
T PRK08633 254 NFPAYAKEVLGLDNTFQVQ-YLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA------------- 319 (1146)
T ss_pred hhHHHHHHHhCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh-------------
Confidence 556665 45788887 666 77888889999999999999999999888887777776666655543
Q ss_pred chhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHH
Q 010323 386 GNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLC 450 (513)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 450 (513)
.+.+..++..++++++.+....+. ..++.+..|++.||+++|+.+++..++.++++.+.+.+..
T Consensus 320 ~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 320 PSLASVLVLFFLFGFSAGLFIVPL-NALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHH-HHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666665554444 5555789999999999999999999988777766555443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-27 Score=205.80 Aligned_cols=342 Identities=14% Similarity=0.072 Sum_probs=220.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccc
Q 010323 77 FDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSV 156 (513)
Q Consensus 77 ~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~ 156 (513)
.+....|.+.+.+.+...+.++.+|.++||+|||+++++|++..+++..+.+++.|+..+++.|++.|+..|...+ .
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v---~ 141 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSV---I 141 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHH---H
Confidence 4778899999999999999999999999999999999999999999999999999997777789999999987755 6
Q ss_pred cceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccc---hHHHHHhhHHHHHH-HHHhhcccCCChHHHH
Q 010323 157 PLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWG---WRISLAMAAAPALI-LTLGALFLPETPNSII 232 (513)
Q Consensus 157 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~---wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~ 232 (513)
.++++|.+++|+|++.++.....+++|.++||.+|+++....+..| .-.+-++..+.... .....+++||+-+...
T Consensus 142 rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk 221 (451)
T KOG2615|consen 142 RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRK 221 (451)
T ss_pred HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchh
Confidence 7899999999999999999999999999999999999987321111 11212222333333 3345677999842211
Q ss_pred HhCC--cHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHH
Q 010323 233 QRSN--DLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAP 310 (513)
Q Consensus 233 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (513)
+++. +.+++.+..+...+ .....+...-+..+.++ .-..+..+.+..+.....+....++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~v~~lrn~p~~~------~i~~~~i~~l~~~ly~~l~s~~~~t~~ 285 (451)
T KOG2615|consen 222 RNDEHSTLQEAADDRLALLK----------FARIFKVAALRNPPLLD------FISVLRIFGLHYFLYLELFSGLENTVL 285 (451)
T ss_pred hcccccchhhhhhhhhhhcc----------hhhhhhhhhhcCccccc------hHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 1100 01111110000000 00000000000011111 111222233333333333444444444
Q ss_pred HHH-HhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccC--cchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcch
Q 010323 311 VLF-RTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLG--RKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGN 387 (513)
Q Consensus 311 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (513)
.+. +.+|+++.+.+ .+....++.+.+......+..+|.. .+-.+..+..++.-..+++... ..
T Consensus 286 ~l~~~rfg~ss~~~G-~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~-------------~~ 351 (451)
T KOG2615|consen 286 FLTHGRFGYSSMQQG-KVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA-------------RT 351 (451)
T ss_pred HhhcCccCCChhhhe-eeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc-------------cc
Confidence 442 45888988888 6666666666666666666666654 3444444444444443333322 33
Q ss_pred hHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhc
Q 010323 388 AYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHF 452 (513)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 452 (513)
.........+..+........+ ..+.....|+++||+.+|+....+.++-++||.+.|.+..+.
T Consensus 352 ~~~l~~~s~l~sf~~A~~vt~L-t~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 352 PVVLYLGSTLKSFSTASVVTCL-TSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred chhhhHHHHHHHHHHHHhhHHH-HHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 3444455555555555454444 455578899999999999999999999999999998876654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-26 Score=247.99 Aligned_cols=336 Identities=14% Similarity=0.053 Sum_probs=229.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHH---HHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhccc
Q 010323 79 SQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILV---GGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASS 155 (513)
Q Consensus 79 ~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~ 155 (513)
....++..+++.+++.++++++|+++||+|||+++.. +.+...+..+.+...++++.+++.|+++|++.+...|.
T Consensus 51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~-- 128 (1140)
T PRK06814 51 NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPI-- 128 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchH--
Confidence 3557888999999999999999999999999997533 33333333344444589999999999999999999999
Q ss_pred ccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCChHHHHHhC
Q 010323 156 VPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRS 235 (513)
Q Consensus 156 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~ 235 (513)
..+++.+++++++|++++++.+++.++|.++||.+++++... .+|++.|+..++..++.+++.+++|+++... ++
T Consensus 129 ~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 203 (1140)
T PRK06814 129 KYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS---GNFVILVALLMGIAVLGWLASLFIPKTGNAA--PD 203 (1140)
T ss_pred HHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHhhCCCCCCCC--CC
Confidence 999999999999999999999999999999999999988765 4799999655555555556666677654210 00
Q ss_pred CcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHh
Q 010323 236 NDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRT 315 (513)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (513)
.+.+. ....+ ....++...+ ++.++...+..+........+..+.|.++++
T Consensus 204 ~~~~~---------------~~~~~----------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 254 (1140)
T PRK06814 204 LKIDR---------------NIIRS----------TITLLKYAKA----DKRIWLAILGISWFWLVGAVVLSQLPLLAKE 254 (1140)
T ss_pred Ceecc---------------chHHH----------HHHHHHHHhc----CchHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 00000 00000 0011223322 2233333333333333345556677887765
Q ss_pred -cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHh-hcCCCC------CCCcch
Q 010323 316 -IKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMEN-QLGDQG------GFSKGN 387 (513)
Q Consensus 316 -~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~ 387 (513)
+|.+....+ .+.....++.+++.++.+++.++..+++.+..+.++..++.+.+.+.... ...... -....+
T Consensus 255 ~~g~~~~~~g-~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1140)
T PRK06814 255 TLGGDENVAT-LFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRH 333 (1140)
T ss_pred HcCCchHHHH-HHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccc
Confidence 688888777 88888999999999999999988877766555555544444333321000 000000 000133
Q ss_pred hHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhc
Q 010323 388 AYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHF 452 (513)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 452 (513)
.+...+..++++++.+....+. .+++.+..|++.+|+++|+.+++..++..+++.+.+.+.+..
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~ 397 (1140)
T PRK06814 334 GWRILIDLFGLAAAGGLYIVPL-FAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG 397 (1140)
T ss_pred cHHHHHHHHHHHHHHHHhHHHH-HHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555666666665555444 556689999999999999999999999999999999887543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=192.43 Aligned_cols=328 Identities=16% Similarity=0.114 Sum_probs=259.6
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhh
Q 010323 68 DTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGI 147 (513)
Q Consensus 68 ~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~ 147 (513)
.++|++|+|+|.+..|++++...+...+.+++..+++.|+|.++.+..++++..++.++-... +.+.++.+-.+.|.|.
T Consensus 35 L~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gI 113 (395)
T COG2807 35 LDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGI 113 (395)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhH
Confidence 456688999999999999999999999999999999999999999999999999999999887 8888999999999999
Q ss_pred hhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCC
Q 010323 148 GFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPET 227 (513)
Q Consensus 148 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 227 (513)
+...+. .+.++-+.|| |+-+.+++++....++|..+++.+...+.+.. .+||....+.+.++++.++.++--...
T Consensus 114 av~nVL--LPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~--~gW~~aL~~WAl~allAl~~WlPq~~r 188 (395)
T COG2807 114 AVINVL--LPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHS--GGWRGALGFWALLALLALLIWLPQALR 188 (395)
T ss_pred HHHHHh--hhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--ccHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999 9999999998 67899999999999999999998877666554 379999999999988877665532111
Q ss_pred hHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHh
Q 010323 228 PNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGF 307 (513)
Q Consensus 228 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (513)
++ . ...+.+..+-. +.++++..+...+++..+...++....
T Consensus 189 ~~-~----------------------------------~~~~~~~~~~~----~vw~~~~aW~vtLfmGlqS~~~Y~~~~ 229 (395)
T COG2807 189 EQ-A----------------------------------ASIATKLVSVR----KVWRSPLAWQVTLFMGLQSLLYYIVIG 229 (395)
T ss_pred cc-c----------------------------------ccccccccccc----ccccCchhHHHHHHHHhhHHHHHHHHH
Confidence 10 0 00001111122 234455667777888888888999999
Q ss_pred cHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 010323 308 YAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKL-GRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKG 386 (513)
Q Consensus 308 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (513)
|+|.++.+.|+|..+++ .......+..++.++....+.+|. ++|+.......++.++.+.+.+. +..
T Consensus 230 WLP~ili~~G~sa~~aG-~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~-----------P~~ 297 (395)
T COG2807 230 WLPAILIDRGLSAAEAG-SLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLA-----------PGQ 297 (395)
T ss_pred HHHHHHHHcCCCHHHhh-hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh-----------hhh
Confidence 99999999999999999 888889999999999999999975 56666676777777777666554 222
Q ss_pred hhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchh
Q 010323 387 NAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAG 455 (513)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (513)
..+.+ .++++.+.+..++.....+....-.++..+.-.|+.+.++++-.+.+|.++|.+.|..|..
T Consensus 298 ~~~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw 363 (395)
T COG2807 298 LPILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSW 363 (395)
T ss_pred HHHHH---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCCh
Confidence 33333 4666666666665443444334445667778889999999999999999999999999843
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-26 Score=215.37 Aligned_cols=329 Identities=13% Similarity=0.068 Sum_probs=220.6
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhh-----hhHHH-HHHHHHHHHHHHHHhhhc---hhHHHHHH
Q 010323 68 DTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAF-----GRRAS-ILVGGAAFLAGSALGGAA---LNIYMLIF 138 (513)
Q Consensus 68 ~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~l~~ 138 (513)
.|.+.+|+|+|.++.++..+. .+...+ .+++|+++||+ ||||. ++.+.++.++.....++. .+++.+..
T Consensus 11 ~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~ 88 (356)
T TIGR00901 11 LPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAG 88 (356)
T ss_pred HHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHH
Confidence 345567789999999999755 455554 99999999998 89887 467777887777777777 46667777
Q ss_pred HHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCC-----ccchHHHHHhhHHH
Q 010323 139 GRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKG-----GWGWRISLAMAAAP 213 (513)
Q Consensus 139 ~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~-----~~~wr~~f~~~~~~ 213 (513)
..++.+++.+...+. ..+++.|++|+|+|+++.++...+..+|.++++.+++.+....+ .++||..|++.++.
T Consensus 89 ~~~~~~~~~~~~~~~--~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~ 166 (356)
T TIGR00901 89 LAFLIAFFSATQDIA--LDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALL 166 (356)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHH
Confidence 888888888888888 88899999999999999999999999999999999877665432 23499999999887
Q ss_pred HHHHHHhhcc-cCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHH
Q 010323 214 ALILTLGALF-LPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAIL 292 (513)
Q Consensus 214 ~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (513)
.++..+..++ .||+++. +++ .++ + +++.+.++++.++++..++.....
T Consensus 167 ~l~~~~~~~~~~~e~~~~---~~~-~~~----------------~----------~~~~~~~~~~~~~~~~~~~~~~~~- 215 (356)
T TIGR00901 167 ILPGLLVTLFLAKEPQED---ASV-PKP----------------L----------TQAVLKPIREFFQRKNMIQALLLL- 215 (356)
T ss_pred HHHHHHHHHHhccCCCcc---ccc-chh----------------H----------HHHHHHHHHHHHHhcCchHHHHHH-
Confidence 7776655444 5664310 000 000 0 000011233333332222233222
Q ss_pred HHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHH-HHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHH
Q 010323 293 IPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVV-TGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGS 371 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 371 (513)
+..+.....+.....+.|.++++.|++..+.+ ..... ..+..+++.++++++.||+|+|+.+..+.++..+....+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g-~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~ 294 (356)
T TIGR00901 216 LLIVLYKLGDSAATVLTTLFLLDMGFSKEEIA-LVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVW 294 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22333334455666778888877888888877 44444 44677899999999999999999988877777666554443
Q ss_pred HHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHH
Q 010323 372 IMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGF 435 (513)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 435 (513)
..... ...+ .+.++.+......++.+++.+...... ..+..|.+|+++||+..|+.+...+
T Consensus 295 ~~~~~-~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 295 LASNG-HHDG-ITFPHLLMLFLTITLEAVTGGLGTVAF-VAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHhcC-cccc-cccchHHHHHHHHHHHHHHhHHHHHHH-HHHHHHhcCCCccHHHHHHHHHHHh
Confidence 31100 0000 000223444444555556555554444 5566899999999999999887654
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-25 Score=215.28 Aligned_cols=344 Identities=17% Similarity=0.162 Sum_probs=248.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhc-----hhHHHHHHHHHHHHhhhhhhhh
Q 010323 78 DSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAA-----LNIYMLIFGRVLLGVGIGFANQ 152 (513)
Q Consensus 78 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~Gi~~~~~~~ 152 (513)
|+..++++.++..+...+.++++|.++||++|||+++.+-++.++..+..++. .+.+.+++.-++.|++.+...|
T Consensus 43 S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~P 122 (524)
T PF05977_consen 43 SPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNP 122 (524)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999888776655544432 4678999999999999999999
Q ss_pred cccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCChHHHH
Q 010323 153 ASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSII 232 (513)
Q Consensus 153 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~ 232 (513)
. ..+++.|..|+++...++++.+...++..++||.+++.+... .|-.+.|.+.++..++.+......+..++.
T Consensus 123 A--~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~---~G~~~~f~inalsfl~~i~~l~~~~~~~~~-- 195 (524)
T PF05977_consen 123 A--WQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAF---FGAAAAFLINALSFLISILALLRWKPPPPP-- 195 (524)
T ss_pred H--HHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHccccccc--
Confidence 9 999999999999999999999999999999999999987665 356778888777555544433333322110
Q ss_pred HhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHH
Q 010323 233 QRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVL 312 (513)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (513)
++. .+| . ..++-+..++-..+++ .+....+..+............+|.+
T Consensus 196 -~~~-~~e-------------------~------~~~~l~~G~ryv~~~~----~l~~~l~~~~~~~l~~~a~~aLlPl~ 244 (524)
T PF05977_consen 196 -SSL-PRE-------------------R------FFSALREGLRYVRSSP----PLRSVLLRSFLFNLFASAVWALLPLF 244 (524)
T ss_pred -ccc-chh-------------------h------hhhhHHHHHHHHhcch----HHHHHHHHHHHHHHhhhHHHHhhhHH
Confidence 000 000 0 0000011122221111 11111111111112223334457777
Q ss_pred HH-hcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHH
Q 010323 313 FR-TIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLI 391 (513)
Q Consensus 313 ~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
.+ ..+.++...+ ++....+++.++|.++.+++.+|+++++.+..+.+..+++.+.+.+. ++.+..
T Consensus 245 a~~~l~~~a~~yG-ll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~-------------~~~~~~ 310 (524)
T PF05977_consen 245 ARDVLGGGASGYG-LLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS-------------PSFWLA 310 (524)
T ss_pred HHHHhCCcHHHHH-HHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc-------------hHHHHH
Confidence 65 4777777777 88899999999999999999999999988888887777776666554 556666
Q ss_pred HHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHHHHHHHHHH
Q 010323 392 LVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFV 471 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (513)
....++.+.+........ .+...+..|++.||+++++.++....+..+|..+.|.+.+..+....+..++++.+++.+.
T Consensus 311 ~~~l~l~G~~~~~~~~~~-~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 311 LIALFLAGAAWIIANSSL-NTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 777777777766655444 4455899999999999999999999999999999999999998665555555554444444
Q ss_pred Hhh
Q 010323 472 HFF 474 (513)
Q Consensus 472 ~~~ 474 (513)
...
T Consensus 390 ~~~ 392 (524)
T PF05977_consen 390 ALR 392 (524)
T ss_pred HHH
Confidence 433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=214.23 Aligned_cols=356 Identities=12% Similarity=0.112 Sum_probs=237.5
Q ss_pred ccccccccccchhH-HHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhh
Q 010323 68 DTHISNYCKFDSQL-LTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVG 146 (513)
Q Consensus 68 ~~~i~~~~~~s~~~-~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~ 146 (513)
.|.+.+|+|+|.++ .|.+.++++.+|+++.++.|+++||+|.|+++.++++.+++.+++.++++++..+.+.|++.|++
T Consensus 49 ~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGva 128 (511)
T TIGR00806 49 TPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVT 128 (511)
T ss_pred HHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhH---HHHHHHHHhhcc
Q 010323 147 IGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAA---APALILTLGALF 223 (513)
Q Consensus 147 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~---~~~~~~~~~~~~ 223 (513)
.|... . ...++..|+|+++|+++.++..++..+|.+++++++..+.. +|||+.+.+.- ....+.++..++
T Consensus 129 EA~~~-A--~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s----~gWr~y~~Ln~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 129 MAARI-A--YSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVT----LGWISYSTLNIISLVFMTFSVFLALF 201 (511)
T ss_pred HHHHH-H--HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 7 89999999999999999999999999999999999888442 57987665432 233334556677
Q ss_pred cCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchh
Q 010323 224 LPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGIN 303 (513)
Q Consensus 224 ~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (513)
+|..++.+.-++++..+.. .........+.+.. +.....+......-..+..-++..++++.++...+......++++
T Consensus 202 LP~~~~sl~f~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~ 279 (511)
T TIGR00806 202 LKRPKRSLFFNRLEDVRGA-LPCELDQMVPGPGG-KLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYY 279 (511)
T ss_pred CCCCchhhhhccccccccc-cccccccCCCCCcc-ccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHH
Confidence 8866554433322110000 00000000000000 000000000000000111112233444556666677777777888
Q ss_pred hhHhcHHHHHHhcCCCc-hhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCC
Q 010323 304 VIGFYAPVLFRTIKLSE-STSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGG 382 (513)
Q Consensus 304 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (513)
.+..|...+.++..-+. ...+ ..-.+..+.+.+..+..|++-.+..+.-.+.++.....-+.+++...
T Consensus 280 qv~~Y~Q~LW~~v~~~~~~yNG-~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~---------- 348 (511)
T TIGR00806 280 LITYYVHTLWGTLDESLNKYNG-AVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMS---------- 348 (511)
T ss_pred HHHHHHHHHHHHcCCCccccCC-HHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhh----------
Confidence 88888888887754422 2333 56666667778888888988555533323333333222222222221
Q ss_pred CCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHh
Q 010323 383 FSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTF 445 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 445 (513)
..++.|...+..+++...+.+........+ +.....+.-|...|+++++.-+-..+...+.
T Consensus 349 -~t~~Iw~~Y~~yvlf~~~y~flitia~~~i-A~~L~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 349 -QSHDIWVLYVTYVLFRGIYQFLVPIATFQI-ASSLSKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred -cccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence 226889999999999888877654443344 5556667778899999888777666555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=209.07 Aligned_cols=351 Identities=17% Similarity=0.170 Sum_probs=218.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhccccc
Q 010323 78 DSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVP 157 (513)
Q Consensus 78 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~ 157 (513)
+.....|+.+.+.++.+++.++.|+++|.||||.+++.+.++..+|+++++.++|...++++..+.|+|.|.... ..
T Consensus 76 ~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~---~~ 152 (599)
T PF06609_consen 76 GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL---AA 152 (599)
T ss_pred CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH---HH
Confidence 346678999999999999999999999999999999999999999999999999999999999999999877764 44
Q ss_pred ceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhc--ccCCChHHHHHhC
Q 010323 158 LYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGAL--FLPETPNSIIQRS 235 (513)
Q Consensus 158 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~--~~~e~p~~~~~~~ 235 (513)
..++|..|.|.|....++...........++.++..+.. +.+|||.|++.++...+.++..+ +.|++.+....++
T Consensus 153 ~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~---~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~ 229 (599)
T PF06609_consen 153 LAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA---HSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRK 229 (599)
T ss_pred HHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc---CCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhcccc
Confidence 458999999999887776666555555566666654432 24799999999887666554432 2343322111111
Q ss_pred CcHHHHHHHHHHHh------------------CC---CchHHH-HHHH-------HH-HHHhhh-hcCCcc--hhhcccC
Q 010323 236 NDLQRAKQMLQRIR------------------GT---DDVEAE-FDDL-------IK-ASSIAK-TVNHPF--KKIIQRK 282 (513)
Q Consensus 236 ~~~~~~~~~~~~~~------------------~~---~~~~~~-~~~~-------~~-~~~~~~-~~~~~~--~~~~~~~ 282 (513)
....+..+.++.+. +. +..+.. .... .. ---+.. ..++|+ .+++++
T Consensus 230 ~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~- 308 (599)
T PF06609_consen 230 LSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKD- 308 (599)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhcc-
Confidence 11112222222210 11 000000 0000 00 000111 112222 233333
Q ss_pred chhHHHHHHHHHHHhhhcchhhhHhcHHHHHH-hcCCCch---hHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHH-HH
Q 010323 283 YRPQLVMAILIPFFLQVTGINVIGFYAPVLFR-TIKLSES---TSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLF-LV 357 (513)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~-~~ 357 (513)
+|.+...++..+.....++....+.|.... -++.+.. ..+ ....+..++..++.++.+.+..+++|-|.. ++
T Consensus 309 --~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~-~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~ 385 (599)
T PF06609_consen 309 --RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIG-WISSPVGFGSCAGAVILGLLFSKIRHIKWQLIF 385 (599)
T ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceee-hhhhhHHHHHHHHHHHHHHHHHHccchhHHHHH
Confidence 234444444444444444554444444443 3444432 334 667778888888999999999988875554 45
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHH
Q 010323 358 GGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLF 437 (513)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~ 437 (513)
+..++.++..++... .+++....+...++.+++.+....+. ...++-..|++.-|++.|+...++.+|
T Consensus 386 ~~~~~ta~~Gama~~-----------~~~n~~~~i~~~~l~g~giG~~~~~~-~~~~ql~~p~~~ig~a~gL~~s~R~~G 453 (599)
T PF06609_consen 386 GSVLMTAFCGAMAAV-----------RPDNKNAAIAFLVLAGFGIGGILVPA-IVIAQLIVPDEDIGTATGLTGSIRSIG 453 (599)
T ss_pred HHHHHHHHHHHHHHc-----------cCCCcchHHHHHHHHHHhHHHHHHHH-HHeeEeeeCchHHHHHHHHHHHHHHHh
Confidence 555555444444433 11222233344455555555443333 444466789999999999999999999
Q ss_pred HHHHHHHhHHHHH
Q 010323 438 TFLIAQTFLAMLC 450 (513)
Q Consensus 438 ~~~~~~~~~~~~~ 450 (513)
+.++..++..+..
T Consensus 454 GsIg~aIy~~I~~ 466 (599)
T PF06609_consen 454 GSIGYAIYNAIFT 466 (599)
T ss_pred hHHHHHHHHHHHH
Confidence 9999988866553
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=232.29 Aligned_cols=369 Identities=15% Similarity=0.138 Sum_probs=248.8
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhch----------------
Q 010323 68 DTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAAL---------------- 131 (513)
Q Consensus 68 ~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---------------- 131 (513)
.+.++++|+++.++.|++.+.+.++++++.++.|+++||+|||+++.++.++++++++++++++
T Consensus 56 l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~ 135 (633)
T TIGR00805 56 LTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTG 135 (633)
T ss_pred chhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccc
Confidence 5677889999999999999999999999999999999999999999999999999999988764
Q ss_pred -----------------------------------hHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHH
Q 010323 132 -----------------------------------NIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGY 176 (513)
Q Consensus 132 -----------------------------------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 176 (513)
.+..++++|+++|+|.+...+. ..+++.|++|+++|+++++++
T Consensus 136 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~--~~~~i~d~~~~~~~~~~~~i~ 213 (633)
T TIGR00805 136 NLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPL--GISYIDDFAKSKNSPLYIGIL 213 (633)
T ss_pred cccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhc--CchhhhccCCccccHHHHHHH
Confidence 2456788999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCcc-------------------chHHHHHhhHHHHHHHHHhhcccCCChHHHHHhCCc
Q 010323 177 ELCTAIGILAASLINYGTQKIKGGW-------------------GWRISLAMAAAPALILTLGALFLPETPNSIIQRSND 237 (513)
Q Consensus 177 ~~~~~~G~~~~~~l~~~~~~~~~~~-------------------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~ 237 (513)
..+..+|.++|+++++.+.+...++ +|+..|++.+++.++..+.++++|++.+....+.+
T Consensus 214 ~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~- 292 (633)
T TIGR00805 214 ESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVN- 292 (633)
T ss_pred HHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccc-
Confidence 9999999999999998876532111 37888988888887766656666654211000000
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHH-hc
Q 010323 238 LQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFR-TI 316 (513)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 316 (513)
.++.++ +.....++.. . . . .........+..+...+++.++...+..++....+..+..|.|.+++ ++
T Consensus 293 ~~~~~~--~~~~~~~~~~-~-~---~----~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~ 361 (633)
T TIGR00805 293 VDVHET--EKLEKSEDKS-R-K---K----NSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQY 361 (633)
T ss_pred hhhhhh--hccccccccc-c-h---h----hhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 000000 0000000000 0 0 0 00000011111222334456666666666677777888889999986 48
Q ss_pred CCCchhHHHHHHHHHHH-HHHHHHHHHHHhhhccCc--chHHHHhHHHHHHHHHHHHHHHHhh-----------------
Q 010323 317 KLSESTSLLMSAVVTGG-IGTLSTIISMILVDKLGR--KVLFLVGGIQMLAAQVMIGSIMENQ----------------- 376 (513)
Q Consensus 317 g~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 376 (513)
|+++.+++ .+.....+ +.+++.+++|+++||++. |+.+.++.....+..+.........
T Consensus 362 g~s~~~ag-~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~ 440 (633)
T TIGR00805 362 GISSAEAN-FLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLLCSPLFLIGCESAPVAGVNNPSTDQS 440 (633)
T ss_pred CCcHHHHH-HHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHHHHHHHeecCCCCccceeeccCCCcc
Confidence 89988888 55555444 568899999999999984 4666666655555544322110000
Q ss_pred -----c---------CCC-------------------------------------------------CCCCc--ch-hHH
Q 010323 377 -----L---------GDQ-------------------------------------------------GGFSK--GN-AYL 390 (513)
Q Consensus 377 -----~---------~~~-------------------------------------------------~~~~~--~~-~~~ 390 (513)
. ... +.-+. .. ...
T Consensus 441 ~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~ 520 (633)
T TIGR00805 441 IYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSCVQTPGNSSAKKGLCNPPCATSLLY 520 (633)
T ss_pred cCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceecccccccCCCCCCCcCCCCCcccchhHHH
Confidence 0 000 00000 01 222
Q ss_pred HHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHH-HHHHHHHHhHHHHHhc
Q 010323 391 ILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFL-FTFLIAQTFLAMLCHF 452 (513)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~ 452 (513)
+++..++..+.......|..... -..+|+++|+.+.|+...+.++ |..-+|.++|.++|..
T Consensus 521 f~~~~~~~~~~~~~~~~p~~~i~-lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~s 582 (633)
T TIGR00805 521 FLILFIPLSFIAFITAVPLYMVL-LRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDVS 582 (633)
T ss_pred HHHHHHHHHHHHHhccCchheEE-eeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhch
Confidence 33333344444444555664444 5889999999999999987764 6677999999999853
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=213.62 Aligned_cols=346 Identities=12% Similarity=0.072 Sum_probs=219.2
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHh---hhc-----hhHHHHHHHHHHH
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALG---GAA-----LNIYMLIFGRVLL 143 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-----~~~~~l~~~r~l~ 143 (513)
++++|.+..+.+++.+.+.++..+++++.|+++||+|||+.++.+....+++.... .+. +.+..+++.|++.
T Consensus 30 ~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (396)
T TIGR00882 30 HDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYL 109 (396)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 45578899999999999999999999999999999999999988776665544322 112 1234456678888
Q ss_pred HhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcc
Q 010323 144 GVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALF 223 (513)
Q Consensus 144 Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 223 (513)
|++.+...+. ...+..|.. ++++...+......++|..+++.+++.+.+ .+||..|++.+++.++..+..+.
T Consensus 110 g~~~~~~~~~--~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~~ 181 (396)
T TIGR00882 110 GFVFSAGAGA--IEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS----IDPQIVFWLGSGFALILMLLLMF 181 (396)
T ss_pred HHHhccchhh--HHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc----cCchHHHHHHHHHHHHHHHHHHH
Confidence 8888877777 666665543 334566777778888999999999887754 47999999988887776655544
Q ss_pred -cCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcch
Q 010323 224 -LPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGI 302 (513)
Q Consensus 224 -~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (513)
.||+|+.. +.++. .+ .+.++++.++.++.++++. ++...+..+.....+
T Consensus 182 ~~~~~~~~~--------~~~~~----~~--------------~~~~~~~~~~~~~~l~~~~----~~~~~l~~~~~~~~~ 231 (396)
T TIGR00882 182 AKPKAPSSA--------TVANA----LG--------------ANASAFSLKLALELFRQRK----FWMFVLYVVGVACVY 231 (396)
T ss_pred hCCCCchhh--------hhhcc----cc--------------cccCCCCHHHHHHHHcCCc----HHHHHHHHHHHHHHH
Confidence 45443210 00000 00 0000000112333443322 111222222222223
Q ss_pred hhhHhcHHHHHHhc----CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcC
Q 010323 303 NVIGFYAPVLFRTI----KLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLG 378 (513)
Q Consensus 303 ~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (513)
.....+.+.++++. +.+....+ .......+...++....+++.||+++|+.+.++..+.++........
T Consensus 232 ~~~~~~~~~y~~~~~~~~~~~~~~~g-~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~------ 304 (396)
T TIGR00882 232 DVFDQQFANFFTSFFATPQQGTRVFG-YVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA------ 304 (396)
T ss_pred HHHHHHHHHHHHHhccccccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc------
Confidence 33434556665543 33444444 66677778888889999999999999999888877777755544332
Q ss_pred CCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHH-HHHHHHHHHHHHHHHhHHHHHhcchhhh
Q 010323 379 DQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSI-NVAVGFLFTFLIAQTFLAMLCHFKAGIF 457 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (513)
++.+......++.+.+..... .....+..+..|++.++++.+. .+....+|+.+++.+.|++.|..|+...
T Consensus 305 -------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~ 376 (396)
T TIGR00882 305 -------TTALEVVILKMLHAFEVPFLL-VGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGA 376 (396)
T ss_pred -------CChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHH
Confidence 344444455555554443322 1223344566787888877766 5678899999999999999999886544
Q ss_pred H-HHHHHHHHHHHH
Q 010323 458 F-FFGGWVVVMTTF 470 (513)
Q Consensus 458 ~-~~~~~~~~~~~~ 470 (513)
+ ..+++..+.+++
T Consensus 377 f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 377 YLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHHHHHHHHHH
Confidence 4 444444444433
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-25 Score=196.42 Aligned_cols=343 Identities=13% Similarity=0.116 Sum_probs=256.6
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhh---hchhHHHHHHHHHHHH
Q 010323 68 DTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGG---AALNIYMLIFGRVLLG 144 (513)
Q Consensus 68 ~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G 144 (513)
.|++++.|+++..+.+++..+++.++.+.+++.|++.+|+|+|+.+++|+.++++++.+.. -..++..++.+-++.|
T Consensus 36 ip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila 115 (422)
T COG0738 36 IPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILA 115 (422)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 5666777899999999999999999999999999999999999999999999999999984 5578899999999999
Q ss_pred hhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccC----------------CccchHHHHH
Q 010323 145 VGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIK----------------GGWGWRISLA 208 (513)
Q Consensus 145 i~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~----------------~~~~wr~~f~ 208 (513)
.|.+...+. +..+++...++++-.+.+++.+...++|.+++|+++..+.... ....||++|.
T Consensus 116 ~Gi~~Leta--aNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl 193 (422)
T COG0738 116 SGIGLLETA--ANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYL 193 (422)
T ss_pred hhhHHHHhc--cchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHH
Confidence 999999999 9999999999988889999999999999999999988776520 0124888898
Q ss_pred hhHHHHHHHHHhhcc--cCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhH
Q 010323 209 MAAAPALILTLGALF--LPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQ 286 (513)
Q Consensus 209 ~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (513)
..+...+++.+.... .|+.+....++ .+.++....+.+ +++
T Consensus 194 ~~~~~lvll~v~~~~~k~p~~~~~~~~~---------------------------------~~~~~~~~~~l~----~~~ 236 (422)
T COG0738 194 ILAGLLVLLAVLILLSKLPDLQVAAPSL---------------------------------GASGSAGLSSLF----QNK 236 (422)
T ss_pred HHHHHHHHHHHHHHhccCCcCCcccccc---------------------------------cccccchHHHHH----hCh
Confidence 888776666555444 45443100000 000011223333 334
Q ss_pred HHHHHHHHHHhhhcchhhhHhcHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHH
Q 010323 287 LVMAILIPFFLQVTGINVIGFYAPVLFRT-IKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAA 365 (513)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 365 (513)
.+....+..+++.........|++.++.+ .|.+..++. ...+....+.++|++++.++..|+...|.+.+...+..+.
T Consensus 237 ~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa-~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill 315 (422)
T COG0738 237 HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAA-YYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILL 315 (422)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 45556666666667777888888888887 777888777 8888899999999999999999999999888777665555
Q ss_pred HHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHh
Q 010323 366 QVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTF 445 (513)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 445 (513)
++...+. ++ ...+....+.+.+.+..++.+ .....+..| ++. ...|..-.+.-+|+++.|++.
T Consensus 316 ~~~~~l~-------------~g-~v~~~~l~~ig~F~simfPTI-fslal~~l~-~~t-s~~s~~l~maivGGAiiP~l~ 378 (422)
T COG0738 316 LLAVALI-------------GG-VVALYALFLIGLFNSIMFPTI-FSLALKNLG-EHT-SVGSGLLVMAIVGGAIIPPLQ 378 (422)
T ss_pred HHHHHHh-------------cC-hHHHHHHHHHHHHhHHHHHHH-HHHHHhccC-ccc-cccceeeeeheecchHHHHHH
Confidence 5555443 22 455556666777777777555 555567777 433 334445556778999999999
Q ss_pred HHHHHhcchhhhHH-HHHHHHHH
Q 010323 446 LAMLCHFKAGIFFF-FGGWVVVM 467 (513)
Q Consensus 446 ~~~~~~~~~~~~~~-~~~~~~~~ 467 (513)
|++.|+.+...... ....|.+.
T Consensus 379 G~i~d~~g~~~~~~~~pllc~ly 401 (422)
T COG0738 379 GVIADMFGIQLTFLIVPLLCYLY 401 (422)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999998544332 33333333
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=211.17 Aligned_cols=387 Identities=12% Similarity=0.066 Sum_probs=242.1
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhc------hhHHHHHHHHH
Q 010323 68 DTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAA------LNIYMLIFGRV 141 (513)
Q Consensus 68 ~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~l~~~r~ 141 (513)
.+.+++++|+|.++.+++.+.. .....++++.|++.||+|||+++.++.++++++.++++++ ++++.+++.|+
T Consensus 50 s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~ 128 (591)
T PTZ00207 50 SGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNG 128 (591)
T ss_pred HHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 3455778899999999998874 4456678889999999999999999999999999999997 68999999999
Q ss_pred HHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHH-HHHHHhhhcccCCccchHHHHHhhHHHHHHHHHh
Q 010323 142 LLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILA-ASLINYGTQKIKGGWGWRISLAMAAAPALILTLG 220 (513)
Q Consensus 142 l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 220 (513)
+.|+|.+...+. ....+.+|+| ++||++.++...+.++|.++ +++...++. .+|+..|++.+++.++..++
T Consensus 129 l~G~G~~~~~~~--~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-----~~~~~~fl~l~vl~~vv~ll 200 (591)
T PTZ00207 129 LMTLGCMLFDLG--AVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-----DNTSAYFFFLMSFALVVGIL 200 (591)
T ss_pred HHHHHHHHHHHH--HHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHH
Confidence 999999988888 7888899997 78999999999999999975 444444443 25888888888877765544
Q ss_pred h-ccc--CCChHHHHHhCCcHHHHHHHHHHHhCC--------------------------------------C-chHHH-
Q 010323 221 A-LFL--PETPNSIIQRSNDLQRAKQMLQRIRGT--------------------------------------D-DVEAE- 257 (513)
Q Consensus 221 ~-~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~-~~~~~- 257 (513)
. .++ |+.+++..++++ .+++++..++..+. + .....
T Consensus 201 ~~~~vr~p~~~~~~~~~~~-~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~ 279 (591)
T PTZ00207 201 AIVFMRLPPFHLTGYQEKH-LDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGF 279 (591)
T ss_pred HHhheeCCcchhhcccccC-CCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 3 334 444444322221 11111111110000 0 00000
Q ss_pred ----H---------------------------HHHH--H-HHH-hhhhc-------C---CcchhhcccCchhHHHHHHH
Q 010323 258 ----F---------------------------DDLI--K-ASS-IAKTV-------N---HPFKKIIQRKYRPQLVMAIL 292 (513)
Q Consensus 258 ----~---------------------------~~~~--~-~~~-~~~~~-------~---~~~~~~~~~~~~~~~~~~~~ 292 (513)
. ++.. + +.+ .+++. + ....+-+....++.-+|+++
T Consensus 280 ~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~ 359 (591)
T PTZ00207 280 AVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLL 359 (591)
T ss_pred HHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHH
Confidence 0 0000 0 000 00000 0 00001111223345567777
Q ss_pred HHHHhhhcchhhhHhcHHHHHHhc-CCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhccCcc--------hHHHHhHHHH
Q 010323 293 IPFFLQVTGINVIGFYAPVLFRTI-KLSEST-SLLMSAVVTGGIGTLSTIISMILVDKLGRK--------VLFLVGGIQM 362 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--------~~~~~~~~~~ 362 (513)
+.+++....-......+..+.+.. |.+.+. ......++.++.+.+|++..|.+.....+| ...+....++
T Consensus 360 ~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~ 439 (591)
T PTZ00207 360 WSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVC 439 (591)
T ss_pred HHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHH
Confidence 777777776677777778888887 663333 121366778899999999999877222221 2222222224
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHH-
Q 010323 363 LAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLI- 441 (513)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~- 441 (513)
.++.+++.... + .....+..++.+++.+..++.. ...++|+|. ++-|+-+-+.....-+|..+.
T Consensus 440 ~~~~lll~~~~------------p-~~~L~~~~~lvg~~~G~~~~~~-~~i~selFg-k~~g~~yN~~~~a~pigs~~~n 504 (591)
T PTZ00207 440 IITMLTLFLTL------------P-KAALPLPYFIAAFANGFMAATI-ALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLN 504 (591)
T ss_pred HHHHHHHHHHC------------C-ccHhHHHHHHHHHHhhHhHHHH-HHHHHHHhc-cchHHHhhHHhHHHHHHHHHHH
Confidence 44444444431 1 1355666777777877776544 555589999 888888777777777777665
Q ss_pred HHHhHHHHHhcch--------------hhhHHHHHHHHHHHHHHHhhcccCC
Q 010323 442 AQTFLAMLCHFKA--------------GIFFFFGGWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 442 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (513)
..+.|.++|+... ..+.+.++++.+..+......-+++
T Consensus 505 ~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 505 RLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred HHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 5677888775421 1455555665555555444333433
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-24 Score=208.76 Aligned_cols=358 Identities=12% Similarity=0.041 Sum_probs=222.0
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhh-hhhHHHHHHHHHHHHHHHHHhhhchhHHH-HHHHHHHHHhhhhh
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRA-FGRRASILVGGAAFLAGSALGGAALNIYM-LIFGRVLLGVGIGF 149 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~Gi~~~~ 149 (513)
++++|++.++.+++.+.+.....+..+++|+++|| +||||+++++.++++++++.++++++... ++++|+++|+|.|.
T Consensus 42 ~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~ 121 (489)
T PRK10207 42 VKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGL 121 (489)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhcccc
Confidence 45678899999999999998888889999999999 99999999999999999999999877554 55889999999999
Q ss_pred hhhcccccceeeccCCCC--CccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCC
Q 010323 150 ANQASSVPLYLSEMAPPR--HRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPET 227 (513)
Q Consensus 150 ~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 227 (513)
..+. ..+++.|.+|++ +|.++.+++..+.++|..++|.+++++.+. .|||+.|++.++..++..+...+.++.
T Consensus 122 ~~~~--~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~---~gw~~~F~i~~i~~~~~~~~~~~~~~~ 196 (489)
T PRK10207 122 FKAN--PASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK---FGYSVTYNLCGAGLIIALLVYFACRGM 196 (489)
T ss_pred ccCC--HHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHHHHHHHHHHcchh
Confidence 9988 889999999877 457799999999999999999999988765 579999998755333333333223321
Q ss_pred hHHHH--HhCCcHHHHHHHH------------HHHhCCCchHHHHHHH----HH--HHHhhhhcCCcchhhcccCchhHH
Q 010323 228 PNSII--QRSNDLQRAKQML------------QRIRGTDDVEAEFDDL----IK--ASSIAKTVNHPFKKIIQRKYRPQL 287 (513)
Q Consensus 228 p~~~~--~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~ 287 (513)
.+... .++++.|.....+ ................ .. -..++. +. .+.. ++|.
T Consensus 197 ~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~--~~--~~~~----r~r~ 268 (489)
T PRK10207 197 VKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAF--KL--DKTG----RNKM 268 (489)
T ss_pred hcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh--cC--CHHH----HHHH
Confidence 11000 0000011100000 0000000000000000 00 000001 00 1121 2233
Q ss_pred HHHHH--HHHHhhhcchhhhHhcHHHHHHh-cCC-----CchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchH-----
Q 010323 288 VMAIL--IPFFLQVTGINVIGFYAPVLFRT-IKL-----SESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVL----- 354 (513)
Q Consensus 288 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~g~-----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~----- 354 (513)
+.... +........+....+..+.+.++ .+. .... . .......+..++..++.+++.||+++|+.
T Consensus 269 ~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~-~-~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~ 346 (489)
T PRK10207 269 FVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINP-V-SFQALNPFWVVVASPILAGIYTHLGSKGKDLSMP 346 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECH-H-HHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcH
Confidence 22222 11222333334444555555553 222 1111 1 23334445566777788999999998863
Q ss_pred --HHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHH
Q 010323 355 --FLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVA 432 (513)
Q Consensus 355 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 432 (513)
+.++.++.+++.+.+.......... ....+.++.+...++.+.+..... +.....+.+..|++.+|.++|+.+.
T Consensus 347 ~k~~~G~~l~~~~~~~~~~~~~~~~~~---~~~~s~~~~i~~~~l~g~Ge~~~~-~~g~~~~~~~aP~~~~g~~~g~~~l 422 (489)
T PRK10207 347 MKFTLGMFLCSLGFLTAAAAGMWFADA---QGLTSPWFIVLVYLFQSLGELFIS-ALGLAMIAALVPQHLMGFILGMWFL 422 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC---CCccCHHHHHHHHHHHHHHHHHHh-HHHHHHHHHhChHHHHHHHHHHHHH
Confidence 6667677666654433211101000 012345666667777777776654 4445555788999999999999999
Q ss_pred HHHHHHHHHHHHhHHH
Q 010323 433 VGFLFTFLIAQTFLAM 448 (513)
Q Consensus 433 ~~~~~~~~~~~~~~~~ 448 (513)
..++|+.++..+....
T Consensus 423 ~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 423 TQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999988777544
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-25 Score=198.52 Aligned_cols=327 Identities=13% Similarity=0.033 Sum_probs=233.0
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhh
Q 010323 73 NYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQ 152 (513)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~ 152 (513)
.+.+-+++++|++.++..+.+.+..++.|.+.||+|+|-.+++|+.+...+++++++.++++.+++.|.+||+|.+....
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence 55677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeccCCCCC-ccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcc-cCCChHH
Q 010323 153 ASSVPLYLSEMAPPRH-RGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALF-LPETPNS 230 (513)
Q Consensus 153 ~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~ 230 (513)
. ..++++|.+|+++ |++++|+...+.++|.++||+.|+++.+. .|.+.+|++.++++++-..+.++ ++.+..
T Consensus 179 s--glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~---~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~- 252 (464)
T KOG3764|consen 179 S--GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF---AGKSAPFLVLAIVLLLDGALQLLVIEPTEM- 252 (464)
T ss_pred h--hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh---cCCcCcHHHHHHHHHHHHHHHHheeCcccc-
Confidence 9 9999999998654 79999999999999999999999999887 46999999999999987777666 433220
Q ss_pred HHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHH
Q 010323 231 IIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAP 310 (513)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (513)
+ +.+..+..++++++++++ +........+++ .+....---++
T Consensus 253 ----~------------------------------~~~~~~~~~~~~Ll~dP~---I~~~agai~~~n-~~lafLePtls 294 (464)
T KOG3764|consen 253 ----D------------------------------PDSTEQGTPMWSLLMDPY---ILLIAGAITFSN-SSLAFLEPTLS 294 (464)
T ss_pred ----C------------------------------ccccccCccHHHHHhCch---Hhhhhcchhhcc-chHHHhCcccH
Confidence 0 001222344555554432 222222222222 22233333344
Q ss_pred HHH-HhcCCCch-hHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHH--HhHHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 010323 311 VLF-RTIKLSES-TSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFL--VGGIQMLAAQVMIGSIMENQLGDQGGFSKG 386 (513)
Q Consensus 311 ~~~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (513)
.++ ++.. ++. +.+ +......+...++..+.|.+.||++..+++. .+.+..+.....+.+.. ...
T Consensus 295 lwm~e~m~-~p~w~~G-~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~----------~~~ 362 (464)
T KOG3764|consen 295 LWMLETMF-TPGWEVG-LAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFAT----------SIA 362 (464)
T ss_pred HHHHHhcc-CCCccee-eeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhh----------hHH
Confidence 444 4455 444 555 7888888999999999999999999444433 33333343333333331 112
Q ss_pred hhHHHHHHHHHHHHhhhccccccccceecccCChh---hhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhh
Q 010323 387 NAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLE---IRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGI 456 (513)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (513)
..|......++.+........|.....+ +.-..+ .-|...++......++.+++|.+.|.+.+..|..+
T Consensus 363 ~L~vp~~~l~~~i~~~dasl~P~l~~lv-d~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~w 434 (464)
T KOG3764|consen 363 QLWVPNFGLGFGIGLADASLIPTLGYLV-DPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEW 434 (464)
T ss_pred HHhhhhHHHHHHHHHHHHHHhhhhHHhc-chhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHH
Confidence 2333333333333333333334323332 332223 56788999999999999999999999999988544
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-23 Score=201.96 Aligned_cols=384 Identities=10% Similarity=0.038 Sum_probs=237.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhHHHhhh-hhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhc
Q 010323 75 CKFDSQLLTSFTSSLYIAGLIASLFASSVTRA-FGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQA 153 (513)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~ 153 (513)
+|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++++.+++.|++.|+|.|...+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 122 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN 122 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence 78899999999999999999999999999999 89999999999999999999999999999999999999999998888
Q ss_pred ccccceeeccCCCCC---ccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccC----C
Q 010323 154 SSVPLYLSEMAPPRH---RGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLP----E 226 (513)
Q Consensus 154 ~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~----e 226 (513)
..++++|++|+++ |+++.+++..+.++|.++||.+++.+.+. .+||+.|.+.++..++..+...+.+ +
T Consensus 123 --~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~---~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~ 197 (475)
T TIGR00924 123 --PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN---YGYHVGFNLAAVGMVIGLLTFFAGRHMLRD 197 (475)
T ss_pred --HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh---cChHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 8899999998754 88899999999999999999998887653 5799999988765544433333222 2
Q ss_pred ChHHHHHhCCcHHHHHHHHHH--------------HhCCCchHHHHHH-------HHHHHHhhhhcCCcchhhcccCchh
Q 010323 227 TPNSIIQRSNDLQRAKQMLQR--------------IRGTDDVEAEFDD-------LIKASSIAKTVNHPFKKIIQRKYRP 285 (513)
Q Consensus 227 ~p~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (513)
.|+. .+..+.++.+..... ....+........ .........+ ....+. .+.+.
T Consensus 198 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~ 271 (475)
T TIGR00924 198 IGSV--PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFK--PRLDAV--ARNKM 271 (475)
T ss_pred CCCC--CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh--ccCCHH--HHhHH
Confidence 2210 000001110000000 0000000000000 0000000000 001111 11111
Q ss_pred HHHHHHHHHHHhhhcchhhhHhcHHHHHHh-cCCCch----hHHHHHHHHHHHHHHHHHHHHHH----hhhc-cCcchHH
Q 010323 286 QLVMAILIPFFLQVTGINVIGFYAPVLFRT-IKLSES----TSLLMSAVVTGGIGTLSTIISMI----LVDK-LGRKVLF 355 (513)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~----~~~~~~~~~~~~~~~~~~~~~g~----l~d~-~g~~~~~ 355 (513)
..++.+++........+.......+.+.++ .+.+.. ... .......+..++..++..+ +.|| .+.+...
T Consensus 272 ~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~-~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~ 350 (475)
T TIGR00924 272 YAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVI-WFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPL 350 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHH-HHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHH
Confidence 223333333333344444444445555433 222211 123 4555555666666555444 3443 2223333
Q ss_pred --HHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHH
Q 010323 356 --LVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAV 433 (513)
Q Consensus 356 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 433 (513)
.++.++.+++...+.+.... .+ .....+.++.+...++.+.+-... .|....+..+..|++.||+.+|+....
T Consensus 351 k~~~G~~l~~~~~~~~~~~~~~--~~--~~~~~s~~~~i~~~~~~~~ge~~~-~p~~~~~~~~~aP~~~~g~~~g~~~l~ 425 (475)
T TIGR00924 351 KFTLGMLFCGASFLTFAASIWF--AD--AGGLTSPWFMVLIYLFQTLGELMI-SPLGLSWWTKIAPQRLMGQMLGMWFLA 425 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--cC--CCCccCHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56677766666665543111 01 011246677777777887776655 466677778999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHhcchh-hhHHHHHHHHHHHHHHHhhc
Q 010323 434 GFLFTFLIAQTFLAMLCHFKAG-IFFFFGGWVVVMTTFVHFFL 475 (513)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 475 (513)
..+|..+++.+.....+..++. .+...+.++++++++.++..
T Consensus 426 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
T TIGR00924 426 QAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV 468 (475)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888776655433 44444444455555444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=195.32 Aligned_cols=346 Identities=10% Similarity=-0.078 Sum_probs=212.2
Q ss_pred cccccchhHHHHH--HHHHHHHHHHHHHHh-HHHhhhhhhHHHHHHHHHHH-HHHHHHhh---hchh-HHHHHHHHHHHH
Q 010323 73 NYCKFDSQLLTSF--TSSLYIAGLIASLFA-SSVTRAFGRRASILVGGAAF-LAGSALGG---AALN-IYMLIFGRVLLG 144 (513)
Q Consensus 73 ~~~~~s~~~~~~~--~s~~~l~~~i~~~~~-g~l~dr~Grr~~l~~~~~~~-~~~~~~~~---~~~~-~~~l~~~r~l~G 144 (513)
+|.|.|.+++|.+ .+.+.+...+.++++ ++..||+||||..++...+. ++.....+ ...+ ..+++..-++.+
T Consensus 29 ~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (390)
T TIGR02718 29 REDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACAS 108 (390)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 3447799999997 467788888888888 44799999999876655332 21122222 2222 334445555566
Q ss_pred hhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhccc
Q 010323 145 VGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFL 224 (513)
Q Consensus 145 i~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 224 (513)
+..+...+. ...+..|..++++++...+....+..+|..+++...+.+.+. .|||..|++.+++.++..+..+++
T Consensus 109 ~~~a~~d~~--~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~---~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 109 LASATQDIA--TDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK---FGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHHHHHHHH--HHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHc
Confidence 666767776 677788888888888888888888899999998776665543 579999999998877766555555
Q ss_pred CCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhh
Q 010323 225 PETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINV 304 (513)
Q Consensus 225 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (513)
+|+++. +++ .+ ++...+.++.+|++....... ..++.......
T Consensus 184 ~~~~~~---~~~-~~-----------------------------~~~~~~~~~~l~~~~~~~~~~----~~~l~~~~~~~ 226 (390)
T TIGR02718 184 KDRAVA---SPE-AP-----------------------------LARRASLFRFFRRPLAWSLLA----LALLSAMTAVS 226 (390)
T ss_pred CCCCcC---ccc-cc-----------------------------hhhHHHHHHHHcCcCHHHHHH----HHHHHHHHHHH
Confidence 443210 000 00 000112334443332222222 22222222334
Q ss_pred hHhcHHHHHHhcCCCchhHHHHHHHHHH-HHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCC
Q 010323 305 IGFYAPVLFRTIKLSESTSLLMSAVVTG-GIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGF 383 (513)
Q Consensus 305 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (513)
...+.+.++++.|+++++.+ ......+ ...+++.++.|++.||+|+|+.+..+..+..+..+.........
T Consensus 227 ~~~~~~~~l~~~G~s~~~ig-~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~------- 298 (390)
T TIGR02718 227 GFGLSKLYLVDAGWPLEWIG-RLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFW------- 298 (390)
T ss_pred HHHHhhHHHHhcCCCHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc-------
Confidence 44466777788899999888 5555544 46677889999999999999988876665533322222111000
Q ss_pred CcchhHHHHHHHHHHHHhhhccccccccceecccCCh-hhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHH
Q 010323 384 SKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPL-EIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGG 462 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (513)
.....+.......+..++.+.......... .+..++ +.+++.+++.+...++|..++|.+.|.+.|..|+...+..+.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~ 377 (390)
T TIGR02718 299 LAPGIAVAWSCSAFGSLITGITSVAIYTAF-MRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGT 377 (390)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 001122222222222333333333332333 344554 889999999999999999999999999999988755555555
Q ss_pred HHHHHHH
Q 010323 463 WVVVMTT 469 (513)
Q Consensus 463 ~~~~~~~ 469 (513)
.+.+.+.
T Consensus 378 ~~~l~a~ 384 (390)
T TIGR02718 378 VLAVLAI 384 (390)
T ss_pred HHHHHHH
Confidence 4444443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=198.47 Aligned_cols=339 Identities=15% Similarity=0.092 Sum_probs=216.2
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhh----hhhh-HHHHHHHHHHHHHHHHHhhhchh------HHHHHHHH
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTR----AFGR-RASILVGGAAFLAGSALGGAALN------IYMLIFGR 140 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r 140 (513)
.+.+|++..++|.+..+.-+..++..|+.|.++| |+|| |+.++++....+++.++....++ +..+++..
T Consensus 34 t~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~ 113 (473)
T PRK10429 34 TDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTY 113 (473)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 4456889999999999999999999999999999 6699 56677788888777665544331 34566667
Q ss_pred HHHHhhhhhhhhcccccceeeccC-CCCCccchhhHHHHHHHHHHHHHHHHHhhh----cccCCccchHHHHHhhHHHHH
Q 010323 141 VLLGVGIGFANQASSVPLYLSEMA-PPRHRGAFNIGYELCTAIGILAASLINYGT----QKIKGGWGWRISLAMAAAPAL 215 (513)
Q Consensus 141 ~l~Gi~~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~----~~~~~~~~wr~~f~~~~~~~~ 215 (513)
++.+++.....+. ..++..|.. ++++|.+..++...+.++|..+.+.+...+ ....+..+|+....+.+++.+
T Consensus 114 ~l~~~~~t~~~ip--~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~ 191 (473)
T PRK10429 114 ILWGMTYTIMDIP--FWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFI 191 (473)
T ss_pred HHHHHHHHHHcch--HHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence 7778888777777 778899998 588999999887777777755555443322 111122368888877777766
Q ss_pred HHHHhhc-ccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHH
Q 010323 216 ILTLGAL-FLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIP 294 (513)
Q Consensus 216 ~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (513)
+..+..+ ..+|.++.... + .+++++.++++.++...+++.+...+..
T Consensus 192 ~~~~~~~~~~~e~~~~~~~--~------------------------------~~~~~~~~~~~~~~~~~~n~~~~~ll~~ 239 (473)
T PRK10429 192 VSTIITLRNVHEVYSSDNQ--V------------------------------SAEGSHLTLKDIVALIYKNDQLSCLLGM 239 (473)
T ss_pred HHHHHHHcCceecCCcccc--c------------------------------cccccCCCHHHHHHHHhcCHHHHHHHHH
Confidence 6554443 36665310000 0 0001123344444322233334334333
Q ss_pred HHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHH
Q 010323 295 FFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIME 374 (513)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 374 (513)
.+...........+.+++.+....+..... .......+..+++.++.+++.||+|+|+.+..+..+..++.+.+.....
T Consensus 240 ~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~-~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
T PRK10429 240 ALAYNIASNIINGFAIYYFTYVIGDADLFP-YYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGL 318 (473)
T ss_pred HHHHHHHHHHHhhheeeEEEEECCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333334444444555555555444444444 5555666888899999999999999999988777765555544432210
Q ss_pred hhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCC-------hhhhhhHhHHHHHHHHHHHHHHHHHhHH
Q 010323 375 NQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFP-------LEIRSAGQSINVAVGFLFTFLIAQTFLA 447 (513)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 447 (513)
. ++.+.+..++...+.+++.+... +....+.+|..+ .+..|...|.......++..+++.+.|.
T Consensus 319 ~--------~~~~~~~~~i~~~l~g~~~~~~~-~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~ 389 (473)
T PRK10429 319 A--------APHNALLIVIAGILLNIGTALFW-VLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGV 389 (473)
T ss_pred c--------CchhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 12334444455555555555444 344555577754 3345567899999999999999999999
Q ss_pred HHHhcch
Q 010323 448 MLCHFKA 454 (513)
Q Consensus 448 ~~~~~~~ 454 (513)
+.+..|+
T Consensus 390 ~l~~~Gy 396 (473)
T PRK10429 390 VLGLIGY 396 (473)
T ss_pred HHHHcCC
Confidence 9886654
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-21 Score=185.23 Aligned_cols=382 Identities=14% Similarity=0.088 Sum_probs=242.7
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhHHHhh----hhhhHHHHHHH-HHHHHHHHHHhhhchhHH-------------
Q 010323 73 NYCKFDSQLLTSFTSSLYIAGLIASLFASSVTR----AFGRRASILVG-GAAFLAGSALGGAALNIY------------- 134 (513)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~~~~~~------------- 134 (513)
+++|++..+.+++..+..+...+.+++.|+++| |+||||.++++ .....++.++.+++++.+
T Consensus 32 ~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~ 111 (477)
T TIGR01301 32 QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKP 111 (477)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchh
Confidence 346789999999999999999999999999999 59999998774 666667767777776643
Q ss_pred ----HHHHHHHHHHhhhhhhhhcccccceeeccCCCCCc--cchhhHHHHHHHHHHHHHHHHHhhhc--ccC--------
Q 010323 135 ----MLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHR--GAFNIGYELCTAIGILAASLINYGTQ--KIK-------- 198 (513)
Q Consensus 135 ----~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~l~~~~~--~~~-------- 198 (513)
.++++-.+..++.....+. ..++++|.+|+++| +.+.++.+...++|.++|+.+++... ...
T Consensus 112 ~~i~~~~i~~~lld~~~n~~~~p--~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~ 189 (477)
T TIGR01301 112 RAIIVFVVGFWILDVANNMLQGP--CRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC 189 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence 2233333444577777777 88899999998865 57999999999999999999988641 110
Q ss_pred C--ccchHHHHHhhHHHHHHHHHh-hcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcc
Q 010323 199 G--GWGWRISLAMAAAPALILTLG-ALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPF 275 (513)
Q Consensus 199 ~--~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (513)
+ ..+.|..|++.++..++..+. .+..+|.|... +++.++ + ..+. .++.+.+..+
T Consensus 190 ~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~---~~~~~~--~---~~~~---------------~~~~~~~~~~ 246 (477)
T TIGR01301 190 GVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG---SDDFIN--S---EAAP---------------PSKHGEEAFF 246 (477)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc---cccchh--h---hccc---------------ccccchhhhH
Confidence 0 026789999988877776655 45588875311 000000 0 0000 0000011123
Q ss_pred hhhccc-CchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHh--cCCCch------hH---HHHHHHHHHHHHHHHHHHHH
Q 010323 276 KKIIQR-KYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRT--IKLSES------TS---LLMSAVVTGGIGTLSTIISM 343 (513)
Q Consensus 276 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~------~~---~~~~~~~~~~~~~~~~~~~g 343 (513)
+++++. +..++..+.+++..++.+.++..+..|.+.++.+ ++.++. +. +.+......+...+.+++..
T Consensus 247 ~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~ 326 (477)
T TIGR01301 247 GELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGME 326 (477)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333331 1224445555555555666666666666666543 332221 11 22445556666667777888
Q ss_pred HhhhccCc-chHHHHhHHHHHHHHHHHHHHHHhhcC--C----CCCCCc--chhHHHHHHHHHHHHhhhcccccccccee
Q 010323 344 ILVDKLGR-KVLFLVGGIQMLAAQVMIGSIMENQLG--D----QGGFSK--GNAYLILVLICVYVAGFAVSWGPLGFLVP 414 (513)
Q Consensus 344 ~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (513)
++.+|+|+ |+...++.++.++++....+......+ + +....+ ...+..+......|+.++... .++++++
T Consensus 327 ~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~-siPfal~ 405 (477)
T TIGR01301 327 KLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITY-SIPFALA 405 (477)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHH-HHhHHHH
Confidence 99999985 677688877777777766554321000 0 000000 113566666777777766553 5778888
Q ss_pred cccCCh--hhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc--h-hhhHHHHHHHHHHHHHHHhhcccCCC
Q 010323 415 SEIFPL--EIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK--A-GIFFFFGGWVVVMTTFVHFFLPETKN 480 (513)
Q Consensus 415 ~~~~p~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (513)
++..|+ +..|..+|+.|.+..+.+.+.....|.+.+..+ . ..+.+.++..++.++...+.+|+.+.
T Consensus 406 s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 406 SIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 888885 455899999999999999999988888666665 2 23334444445555666677776653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.5e-22 Score=194.10 Aligned_cols=331 Identities=14% Similarity=0.084 Sum_probs=208.5
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhh----hhhH-HHHHHHHHHHHHHHHHhhhchh------HHHHHHHH
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRA----FGRR-ASILVGGAAFLAGSALGGAALN------IYMLIFGR 140 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r 140 (513)
.+++|++..++|.+.++..+..++..|+.|+++|| +||| +.++.+....+++.++....++ ++.+++..
T Consensus 37 t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~ 116 (444)
T PRK09669 37 TDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTY 116 (444)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 45678899999999999999999999999999998 7874 5566777777777765555443 45666667
Q ss_pred HHHHhhhhhhhhcccccceeeccC-CCCCccchhhHHHHHHHHHHHHHHHHHhhhccc----CCccchHHHHHhhHHHHH
Q 010323 141 VLLGVGIGFANQASSVPLYLSEMA-PPRHRGAFNIGYELCTAIGILAASLINYGTQKI----KGGWGWRISLAMAAAPAL 215 (513)
Q Consensus 141 ~l~Gi~~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~----~~~~~wr~~f~~~~~~~~ 215 (513)
++.+++....... ..++.+|+. ++++|.+..++...+..+|..+++.+...+... ....+|+..+.+.+++++
T Consensus 117 ~l~~~~~t~~~ip--~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~ 194 (444)
T PRK09669 117 ILLSLVYTAINVP--YCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGV 194 (444)
T ss_pred HHHHHHHHhhcch--HHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence 7777766666665 667889988 457899888888888888877776544332221 113579999888888776
Q ss_pred HHHHhhc-ccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHH
Q 010323 216 ILTLGAL-FLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIP 294 (513)
Q Consensus 216 ~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (513)
+..+..+ ..+|.++.. +++ +.+..+.+++.++++. ++.....
T Consensus 195 v~~~~~~~~~~e~~~~~--~~~-------------------------------~~~~~~~~~~~~~n~~----~~~l~~~ 237 (444)
T PRK09669 195 VLFFCCFFMTKERYTPE--VDN-------------------------------SSSVWKDLKLLLGNSQ----WRIMFIF 237 (444)
T ss_pred HHHHHHhCCeEEecCCC--CcC-------------------------------CCCHHHHHHHHhCCch----HHHHHHH
Confidence 6654443 355532100 000 0000112233333322 2222222
Q ss_pred HHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHH
Q 010323 295 FFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIME 374 (513)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 374 (513)
.+.............+++.+.. +...+..........+..+++.++.+++.||+|+|+.+..+..+..++...+...
T Consensus 238 ~~~~~~~~~~~~~~~~y~~~~~-~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~-- 314 (444)
T PRK09669 238 NVVLLTAVVTRGGATLYYVNYV-LLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI-- 314 (444)
T ss_pred HHHHHHHHHHHhhhhheeeeee-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--
Confidence 2222222222223333333332 2222233244555567778888999999999999999887766555433332222
Q ss_pred hhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCC-------hhhhhhHhHHHHHHHHHHHHHHHHHhHH
Q 010323 375 NQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFP-------LEIRSAGQSINVAVGFLFTFLIAQTFLA 447 (513)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 447 (513)
+.++.+...+..++.+++.+... +..+.+.+|..+ .+..|...|..+....+|..+++.+.|.
T Consensus 315 ---------~~~~~~~~~~~~~i~g~~~~~~~-~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ 384 (444)
T PRK09669 315 ---------PPSNVWLIFALNILFNFIQNLTT-PLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW 384 (444)
T ss_pred ---------CcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22445555555566666666543 555666677765 2334667888999999999999999999
Q ss_pred HHHhcch
Q 010323 448 MLCHFKA 454 (513)
Q Consensus 448 ~~~~~~~ 454 (513)
+.+..|+
T Consensus 385 ll~~~Gy 391 (444)
T PRK09669 385 ILAWVDY 391 (444)
T ss_pred HHHHcCC
Confidence 9987764
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=192.04 Aligned_cols=356 Identities=11% Similarity=0.066 Sum_probs=206.3
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhh-hhhHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHhhhhh
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRA-FGRRASILVGGAAFLAGSALGGAAL-NIYMLIFGRVLLGVGIGF 149 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~Gi~~~~ 149 (513)
++++|++.++.+++.+.+........+++|+++|| +|||+++.++.++.+++.+++++++ +.+.+++.|+++|++.|.
T Consensus 49 ~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~ 128 (500)
T PRK09584 49 VKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGL 128 (500)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhc
Confidence 45678899999999888876666767899999999 5999999999999999999998874 566777889999999998
Q ss_pred hhhcccccceeeccCCCCC--ccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhh----cc
Q 010323 150 ANQASSVPLYLSEMAPPRH--RGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGA----LF 223 (513)
Q Consensus 150 ~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~----~~ 223 (513)
..+. ..+++.|++|+++ |..+.+++..+.++|..++|.+++++.+. .|||+.|.+.++..++..+.. .+
T Consensus 129 ~~~~--~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~---~g~~~~F~i~~i~~~i~~i~~~~~~~~ 203 (500)
T PRK09584 129 FKAN--PSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK---YGWSVAFALSVVGMLITVVNFAFCQRW 203 (500)
T ss_pred ccCC--HHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 8887 8889999998654 45688899999999999999999887654 579999998876444433222 22
Q ss_pred cCCChHHHHHhCCcHHHHHHH---------H-HHHhCCCchHHHHHHH---HHHHHhhhhcCCcchhhcccCchhHHHHH
Q 010323 224 LPETPNSIIQRSNDLQRAKQM---------L-QRIRGTDDVEAEFDDL---IKASSIAKTVNHPFKKIIQRKYRPQLVMA 290 (513)
Q Consensus 224 ~~e~p~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (513)
++|.++....+..|..+.... . .......+........ .......+.. .. .++..+++.+..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~ 278 (500)
T PRK09584 204 VKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEA-FA----MKGAARRKMIVA 278 (500)
T ss_pred hccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-hh----cCHHHHHHHHHH
Confidence 333211000000001110000 0 0000000000000000 0000000000 00 001112222222
Q ss_pred HHHHHHhhhcchhhhHhcHHHHHH----h-c-----CCCchhHHHHHHHHHHHHHHHHHHHH----HHhhhccCcchHHH
Q 010323 291 ILIPFFLQVTGINVIGFYAPVLFR----T-I-----KLSESTSLLMSAVVTGGIGTLSTIIS----MILVDKLGRKVLFL 356 (513)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~----~-~-----g~~~~~~~~~~~~~~~~~~~~~~~~~----g~l~d~~g~~~~~~ 356 (513)
+.+. . ....++......+..+. + . |..- ... .......+..++..++. +++.+|.+..+.+.
T Consensus 279 ~~~~-~-~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i-~~~-~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~ 354 (500)
T PRK09584 279 FILM-L-EAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAV-EPE-QYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFA 354 (500)
T ss_pred HHHH-H-HHHHHHHHHHHhccHHHHHHHHhccccccceEE-CHH-HHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHH
Confidence 2111 1 11112222222232221 1 1 1111 122 34444554555555555 45555555557778
Q ss_pred HhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHH
Q 010323 357 VGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFL 436 (513)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 436 (513)
++..+.+++.+.+....... ++ ...-+.++.+...++.+++-... .|....++.+..|++.||.++|+......+
T Consensus 355 ~G~~l~~l~f~~l~~~~~~~-~~---~~~vs~~~~~~~~~l~~~ge~~~-~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~ 429 (500)
T PRK09584 355 IGMVLCSGAFLVLPLGAKFA-ND---AGIVSVNWLIASYGLQSIGELMI-SGLGLAMVAQLVPQRLMGFIMGSWFLTTAG 429 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CC---CCccCHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 88888888877766543210 00 01123445566666666665444 566677778999999999999988777777
Q ss_pred HHHHHHHHhH
Q 010323 437 FTFLIAQTFL 446 (513)
Q Consensus 437 ~~~~~~~~~~ 446 (513)
|..++..+.+
T Consensus 430 g~~~~g~~~~ 439 (500)
T PRK09584 430 AALIAGYVAN 439 (500)
T ss_pred HHHHHHHHHH
Confidence 7777666654
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-21 Score=175.37 Aligned_cols=396 Identities=12% Similarity=0.082 Sum_probs=264.1
Q ss_pred cchHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHH
Q 010323 18 KITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIAS 97 (513)
Q Consensus 18 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~ 97 (513)
|..+++|.++++.++..+.+++.+..++++ ....+.| |+ +....-|+..+|.+.+....
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i---~n~~~~~-----------------Yg-s~~~~~wlsmIym~v~vp~g 96 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPI---NNYVNSF-----------------YG-SSSAADWLSMIYMVVSVPFG 96 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhH---HHHHHHH-----------------hc-chHHHHHHHHHHHHHHHHHh
Confidence 567888999988899888888888777665 2333333 34 67778899999999999999
Q ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhc------hhHH--HHHHHHHHHHhhhhhhhhcccccceeeccCCCCCc
Q 010323 98 LFASSVTRAFGRRASILVGGAAFLAGSALGGAA------LNIY--MLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHR 169 (513)
Q Consensus 98 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~--~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r 169 (513)
+++-|+.|++|-|..++++..+..+|+.+-..+ +.++ ....+..+.+.+.-..... -..+..-|++++||
T Consensus 97 f~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~l--PskiA~~WF~~~qr 174 (480)
T KOG2563|consen 97 FAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGL--PSKIAAVWFPPDQR 174 (480)
T ss_pred hHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhcc--ccHHHHhhCCcchh
Confidence 999999999999999999999999999987776 3345 6778888888887776655 55677789999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhhcccC---CccchHH--HHHhhHHHHHHHHHhh-cccCC---ChHHHHHhCCcHHH
Q 010323 170 GAFNIGYELCTAIGILAASLINYGTQKIK---GGWGWRI--SLAMAAAPALILTLGA-LFLPE---TPNSIIQRSNDLQR 240 (513)
Q Consensus 170 ~~~~~~~~~~~~~G~~~~~~l~~~~~~~~---~~~~wr~--~f~~~~~~~~~~~~~~-~~~~e---~p~~~~~~~~~~~~ 240 (513)
..+..+-..+..+|.+++.++...+.... ++..|.. .|+...+++.+.+++. +..++ +|....+..
T Consensus 175 a~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~----- 249 (480)
T KOG2563|consen 175 AIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAA----- 249 (480)
T ss_pred hhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhh-----
Confidence 99999999998899998888877776544 2345765 3544444444333322 22333 332110000
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCc
Q 010323 241 AKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSE 320 (513)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 320 (513)
....++.+-.++..+++.+....+.+....+.++...+.+...+...|++.
T Consensus 250 -----------------------------~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~ 300 (480)
T KOG2563|consen 250 -----------------------------LQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEG 300 (480)
T ss_pred -----------------------------hhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCc
Confidence 001122222223333445555666666665555655555554445566666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchH-HHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHH
Q 010323 321 STSLLMSAVVTGGIGTLSTIISMILVDKLGRKVL-FLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYV 399 (513)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (513)
..++ .......+.+++++.+.|.+.||.++-+. ..+......++...+..... .....+.......+++
T Consensus 301 ~~aG-~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~---------~~~~~viv~~t~~~~g 370 (480)
T KOG2563|consen 301 VFAG-YIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTL---------FLGDSVIVFTTCGLLG 370 (480)
T ss_pred cccc-hhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc---------cCCceEehhhhHHHHH
Confidence 5566 88888889999999999999999876444 44444443333222222111 1133344444444444
Q ss_pred HhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc----hhhhHHHHHHHHHHHHHHHhhc
Q 010323 400 AGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK----AGIFFFFGGWVVVMTTFVHFFL 475 (513)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 475 (513)
.+ +.+..|+...+..|..-|..-++..|+.+..+++.+.+-..+.+...+..+ +...-+......+.......++
T Consensus 371 ~~-~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~ 449 (480)
T KOG2563|consen 371 FF-GTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFF 449 (480)
T ss_pred Hh-hcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhh
Confidence 44 445567877777888666777899999999999999999999999888776 4444445555555555555555
Q ss_pred ccCCCC
Q 010323 476 PETKNV 481 (513)
Q Consensus 476 ~~~~~~ 481 (513)
++..+|
T Consensus 450 r~~y~R 455 (480)
T KOG2563|consen 450 RPDYRR 455 (480)
T ss_pred hhhHHh
Confidence 544443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=176.16 Aligned_cols=335 Identities=16% Similarity=0.164 Sum_probs=244.1
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhh----hhhH-HHHHHHHHHHHHHHHHhhhchh------HHHHHHHH
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRA----FGRR-ASILVGGAAFLAGSALGGAALN------IYMLIFGR 140 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r 140 (513)
.+.+|+++..+|.+..+.-+--++..|+.|.+.|| +||+ +.++++.+..++.+.++-.+++ ....++..
T Consensus 40 Tdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY 119 (467)
T COG2211 40 TDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTY 119 (467)
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHH
Confidence 45568899999999999999999999999999995 7875 5667788999999988888774 45666778
Q ss_pred HHHHhhhhhhhhcccccceeeccCC-CCCccchhhHHHHHHHHHHHHHHHHHhhhcccC----CccchHHHHHhhHHHHH
Q 010323 141 VLLGVGIGFANQASSVPLYLSEMAP-PRHRGAFNIGYELCTAIGILAASLINYGTQKIK----GGWGWRISLAMAAAPAL 215 (513)
Q Consensus 141 ~l~Gi~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~----~~~~wr~~f~~~~~~~~ 215 (513)
++.+++....... -.++..|..+ ++||.+..++...+.++|..+...+...+.... ...||+....+.+++++
T Consensus 120 ~l~~l~YT~vniP--y~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~ 197 (467)
T COG2211 120 MLLGLGYTLVNIP--YGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGV 197 (467)
T ss_pred HHHHHHHHheeCc--hhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHH
Confidence 8889999888877 7788899875 688999999999999999766655543333222 13589999999998888
Q ss_pred HHHHhhcc-cCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHH
Q 010323 216 ILTLGALF-LPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIP 294 (513)
Q Consensus 216 ~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (513)
+..+.+++ .+|.+.. +. ..+...+.++++.+...++++.+...++.
T Consensus 198 i~~l~~~~~v~ER~~~---~~------------------------------~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~ 244 (467)
T COG2211 198 ILLLFCFFNVKERVVE---TQ------------------------------PTKTGVKLKLKDSFLLIFKNRPLLLLLLM 244 (467)
T ss_pred HHHHHHHHHhhcccCc---cc------------------------------cCcccccccHHHHHHHHHccchHHHHHHH
Confidence 87776665 7776420 00 00011233344333322333444444445
Q ss_pred HHhhhcchhhhHhcHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHH
Q 010323 295 FFLQVTGINVIGFYAPVLFRT-IKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIM 373 (513)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 373 (513)
..+.............+|.+. .|.++.... ..........+++.++..++.+|+|+|+.+..+.++..++.+.+.+.
T Consensus 245 ~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~-~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~- 322 (467)
T COG2211 245 NLLLFIAFNIRGSIMVYYVTYVLGDPELFAY-LLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT- 322 (467)
T ss_pred HHHHHHHHHHHhhhhheeEEEEcCChHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh-
Confidence 555555556556666666554 455555554 56666667777779999999999999999999999998888888776
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCC-------hhhhhhHhHHHHHHHHHHHHHHHHHhH
Q 010323 374 ENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFP-------LEIRSAGQSINVAVGFLFTFLIAQTFL 446 (513)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~~~~~~~~ 446 (513)
+.++.+..++..++.+.+.+.. .++++++++|... .+..|...|...++..+|.+++..+.|
T Consensus 323 ----------~~~~~~l~~~~~~i~~~g~~~~-~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g 391 (467)
T COG2211 323 ----------PAGSVVLIVVALIIAGVGTGIA-NPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPG 391 (467)
T ss_pred ----------cCcchHHHHHHHHHHHHHhhcc-ccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777665 4777888888753 234567789999999999999999999
Q ss_pred HHHHhcch
Q 010323 447 AMLCHFKA 454 (513)
Q Consensus 447 ~~~~~~~~ 454 (513)
+..+..|+
T Consensus 392 ~~L~~~Gy 399 (467)
T COG2211 392 WILGAIGY 399 (467)
T ss_pred HHHHHcCC
Confidence 99988763
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-20 Score=176.41 Aligned_cols=327 Identities=16% Similarity=0.087 Sum_probs=216.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhh-hHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcc
Q 010323 76 KFDSQLLTSFTSSLYIAGLIASLFASSVTRAFG-RRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQAS 154 (513)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~ 154 (513)
|.|..|+|.+.+...+...++++++|.++||++ +||.+.+..++.++........++++.+++.-++..+......|.
T Consensus 33 G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl- 111 (400)
T PF03825_consen 33 GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPL- 111 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHH-
Confidence 679999999999999999999999999999986 578888888888887777788889998888888888877777777
Q ss_pred cccceeeccCCCCCccchhhHHHHHHHHHHHHHHHH-HhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCChHHHHH
Q 010323 155 SVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLI-NYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQ 233 (513)
Q Consensus 155 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l-~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~ 233 (513)
..++..+...+ ++.-.|-.-...++|.+++... +..+....+..+....+++.+..+++.....+.+|+.|+....
T Consensus 112 -~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~ 188 (400)
T PF03825_consen 112 -SDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPKRSA 188 (400)
T ss_pred -HHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCcccccc
Confidence 66666666542 2222333333344444444322 1112211111123345566665555555555667877621100
Q ss_pred hCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHH
Q 010323 234 RSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLF 313 (513)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (513)
+++ .++....+..+++|++ .+....+..+...........+.+.++
T Consensus 189 ~~~------------------------------~~~~~~~~~~~llk~~----~~~~Fll~~~l~~~~~~~~~~f~~~yl 234 (400)
T PF03825_consen 189 KES------------------------------VKKLLGLDALKLLKNP----RFLVFLLAAFLIGISHAAYYTFFSIYL 234 (400)
T ss_pred CCC------------------------------cccccchHHHHHhcCc----cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000011112333332 233333333444444566677888889
Q ss_pred HhcC-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHH
Q 010323 314 RTIK-LSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLIL 392 (513)
Q Consensus 314 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (513)
++.| .+....+ .......+..++.-...+++.+|+|.|+++.++....++=..++.... ++.+...
T Consensus 235 ~~~gg~~~~~~g-~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~------------~~~~~~~ 301 (400)
T PF03825_consen 235 QELGGYSGSTIG-ILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS------------DPWPFIV 301 (400)
T ss_pred HHcccchhhHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc------------CCcHHHH
Confidence 9988 5555555 666778889999999999999999999999999998888887776641 2222222
Q ss_pred HH----HHHHHHhhhccccccccceecccCChhhhhhHhHHHHHH-HHHHHHHHHHHhHHHHHhcch
Q 010323 393 VL----ICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAV-GFLFTFLIAQTFLAMLCHFKA 454 (513)
Q Consensus 393 ~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~ 454 (513)
.. ..+.+..++..+... ..++.+..|++.|+++.++.+.. ..+|..++..+.|++.|+.+.
T Consensus 302 ~~~~l~q~lhG~tf~~~~~a~-~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~ 367 (400)
T PF03825_consen 302 ALQLLGQLLHGLTFGLFHAAS-VRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA 367 (400)
T ss_pred HHHHHHHhhhhHHHHHHHHHH-HHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 22 234666666655433 56668999999999999998876 469999999999999998873
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-20 Score=182.81 Aligned_cols=329 Identities=10% Similarity=0.032 Sum_probs=200.8
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhh----hhhHHH-HHHHHHHHHHHHHHhhhchh------HHHHHHHH
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRA----FGRRAS-ILVGGAAFLAGSALGGAALN------IYMLIFGR 140 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr----~Grr~~-l~~~~~~~~~~~~~~~~~~~------~~~l~~~r 140 (513)
.+.+|+++..+|.+..+.-+--++..|+.|.++|| +||||. ++++....+++.+++...++ ...+.+.-
T Consensus 37 t~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~ 116 (460)
T PRK11462 37 TDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITY 116 (460)
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 34568899999999999999999999999999995 798654 55677788877776654442 34566666
Q ss_pred HHHHhhhhhhhhcccccceeeccCC-CCCccchhhHHHHHHHHHHHHHHHHHhhhcccC----CccchHHHHHhhHHHHH
Q 010323 141 VLLGVGIGFANQASSVPLYLSEMAP-PRHRGAFNIGYELCTAIGILAASLINYGTQKIK----GGWGWRISLAMAAAPAL 215 (513)
Q Consensus 141 ~l~Gi~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~----~~~~wr~~f~~~~~~~~ 215 (513)
++..++....... -.++..|..+ ++||++..++...+..+|..+++.+...+.... ...+|+....+.+++.+
T Consensus 117 ~~~~~~~t~~~ip--y~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~ 194 (460)
T PRK11462 117 TLLTLLYTVVNIP--YCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAF 194 (460)
T ss_pred HHHHHHHHHHhcc--HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence 7778887777776 7788899887 788999999999999998877766644332221 12468888877777766
Q ss_pred HHHHhhcc-cCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHH
Q 010323 216 ILTLGALF-LPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIP 294 (513)
Q Consensus 216 ~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (513)
++....++ .+|.++. + +++.+.++.++...+++.+......
T Consensus 195 i~~~i~~~~~kE~~~~-----~---------------------------------~~~~~~~~~l~~~~~Nk~~~~l~~~ 236 (460)
T PRK11462 195 MMLAFCFFTTKERVEA-----P---------------------------------PTTTSMREDLRDIWQNDQWRIVGLL 236 (460)
T ss_pred HHHHHHHhcceeccCC-----C---------------------------------ccCCCHHHHHHHHhCChHHHHHHHH
Confidence 65544443 5554210 0 0011122222222222222222222
Q ss_pred HHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHH
Q 010323 295 FFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIME 374 (513)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 374 (513)
.++.............++.+....++.... .......+..+++.++++++.||+++|+....+..+..+...++.+.
T Consensus 237 ~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~-~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~-- 313 (460)
T PRK11462 237 TIFNILAVCVRGGAMMYYVTWILGTPEVFV-AFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV-- 313 (460)
T ss_pred HHHHHHHHHHHHhHhhhhhhhhcCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--
Confidence 222222222222333333333322333333 45666778888999999999999999988765544443333332222
Q ss_pred hhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCC-------hhhhhhHhHHHHHHHHHHHHHHHHHhHH
Q 010323 375 NQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFP-------LEIRSAGQSINVAVGFLFTFLIAQTFLA 447 (513)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 447 (513)
+..+.+...+..++.+++.+. ..++.+.+.+|..+ .+..|...+.......+|.++++.+.|.
T Consensus 314 ---------~~~~~~~~~~~~~l~g~~~~~-~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~ 383 (460)
T PRK11462 314 ---------PMQASITMFVFIFVIGVLHQL-VTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW 383 (460)
T ss_pred ---------chhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112232333333444444332 23444555556544 2233455577778899999999999999
Q ss_pred HHHhcc
Q 010323 448 MLCHFK 453 (513)
Q Consensus 448 ~~~~~~ 453 (513)
+.+..|
T Consensus 384 iL~~~G 389 (460)
T PRK11462 384 MLAYGG 389 (460)
T ss_pred HHHHcC
Confidence 887654
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=184.68 Aligned_cols=332 Identities=16% Similarity=0.206 Sum_probs=241.5
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhh----hhhhHHH-HHHHHHHHHHHHHHhhhc-h-------hHHHHHH
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTR----AFGRRAS-ILVGGAAFLAGSALGGAA-L-------NIYMLIF 138 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~-l~~~~~~~~~~~~~~~~~-~-------~~~~l~~ 138 (513)
.+.+|+++...|.+..+..+-.++..|+.|.++| |+||||. +++|..+.+++.+++... + ....+.+
T Consensus 29 ~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~ 108 (428)
T PF13347_consen 29 TDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFV 108 (428)
T ss_pred HHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHH
Confidence 3445789999999999999999999999999999 8998765 456888888887777765 4 2344577
Q ss_pred HHHHHHhhhhhhhhcccccceeeccCC-CCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCc----cchHHHHHhhHHH
Q 010323 139 GRVLLGVGIGFANQASSVPLYLSEMAP-PRHRGAFNIGYELCTAIGILAASLINYGTQKIKGG----WGWRISLAMAAAP 213 (513)
Q Consensus 139 ~r~l~Gi~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~----~~wr~~f~~~~~~ 213 (513)
..++..++....... ..++..|..+ +++|.+..+.-..+..+|.++...+...+....+. .+|++..++.+++
T Consensus 109 ~~~l~~~~~t~~~i~--~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv 186 (428)
T PF13347_consen 109 FYILFDIAYTFVQIP--YNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIV 186 (428)
T ss_pred HHHHHHHhhhhccCc--hhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHH
Confidence 777778888888777 7889999997 57899999999999999887666665544433221 2799999999888
Q ss_pred HHHHHHhhcc-cCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHH
Q 010323 214 ALILTLGALF-LPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAIL 292 (513)
Q Consensus 214 ~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (513)
.++..+...+ .+|.++. .++++++.++++.++...++|.+....
T Consensus 187 ~~v~~~i~~~~~ke~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~nr~~~~l~ 231 (428)
T PF13347_consen 187 GLVFFLITFFFVKERSVE-----------------------------------VTEQEKKISLRDSLRSLFRNRPFRILL 231 (428)
T ss_pred HHHHhhhhhheeeecccc-----------------------------------ccccccccccccchhhhcccchHHHHH
Confidence 8876655544 7772110 011122333444444333344444444
Q ss_pred HHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHH
Q 010323 293 IPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSI 372 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 372 (513)
+..++............+++.+..-.++.... .......+..+++.++.++++||+|+|+.+..+..+.+++.+.+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~-~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~ 310 (428)
T PF13347_consen 232 LAFFLQWLAFALMNTFLPYYFTYVLGNEGLIS-IFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFL 310 (428)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHhcCchhhH-HHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHH
Confidence 55555555555666666777766333334444 56667788899999999999999999999999999988888877665
Q ss_pred HHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCCh-------hhhhhHhHHHHHHHHHHHHHHHHHh
Q 010323 373 MENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPL-------EIRSAGQSINVAVGFLFTFLIAQTF 445 (513)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~g~~~~~~~~~~~~~~~~~ 445 (513)
+.++.+...+..++.+.+.+..+ ...+.+.+|..+. +..|...|+.+....++..+++.+.
T Consensus 311 -----------~~~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~ 378 (428)
T PF13347_consen 311 -----------GPGSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIV 378 (428)
T ss_pred -----------HhhhHHHHHHHHHHhHhhhcccc-cccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence 22467777788888888877665 4556666888763 3458888999999999999999999
Q ss_pred HHHHHhcc
Q 010323 446 LAMLCHFK 453 (513)
Q Consensus 446 ~~~~~~~~ 453 (513)
+.+.+..|
T Consensus 379 g~~l~~~G 386 (428)
T PF13347_consen 379 GLLLALVG 386 (428)
T ss_pred HHHHHHhC
Confidence 99987765
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=190.47 Aligned_cols=380 Identities=12% Similarity=-0.007 Sum_probs=233.9
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhh-----hHHHHHHHHHHHH-HHHHHhhhchhHHH-HHHHH
Q 010323 68 DTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFG-----RRASILVGGAAFL-AGSALGGAALNIYM-LIFGR 140 (513)
Q Consensus 68 ~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G-----rr~~l~~~~~~~~-~~~~~~~~~~~~~~-l~~~r 140 (513)
.+-+++++|++.++++...+...+...+-.+ +|+++||++ ||+.++++.++.+ ++....+..++... ..+.+
T Consensus 49 ~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 127 (468)
T TIGR00788 49 SPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFI 127 (468)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 3445677899999999999999999998666 999999998 7777788777663 44344444455444 44488
Q ss_pred HHHHhhhhhhhhcccccceeeccCCCCCccchhhHH---HHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHH
Q 010323 141 VLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGY---ELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALIL 217 (513)
Q Consensus 141 ~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~---~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~ 217 (513)
++.+++.+...+. .-++..|..+ +++....+.. .....+|.++++.+++.+.+. .+||..|++.+.+.++.
T Consensus 128 ~l~~~~~a~~dv~--~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~---~~~~~~f~~~a~l~ll~ 201 (468)
T TIGR00788 128 FLAALAKALYDVL--VDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK---TLTRILFLITAALLLLQ 201 (468)
T ss_pred HHHHHHHHHHHHh--HHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh---cCcchHHHHHHHHHHHH
Confidence 9999999999998 8999999998 5554433333 333458999999998877654 47999999988877777
Q ss_pred HHhhcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHH-
Q 010323 218 TLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFF- 296 (513)
Q Consensus 218 ~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 296 (513)
.+...+++|++.....+.+ ++... .. ........ +..++.....+..+++ +..+....+.++
T Consensus 202 ~~~~~~~~E~~~~~~~~~~--~~~~~-----~~-~~~~~~~~------~~~~~~~~~l~~~l~~---~~i~~~l~fifl~ 264 (468)
T TIGR00788 202 LFVSNLSKERRAFVRPRIG--TYLEM-----NM-ALLTLGVL------ANVKVQILGLRGAIQL---LEIAKPLIFIFLS 264 (468)
T ss_pred HHHHHhccccccccccccc--ccchh-----hh-hhhhhhHH------HHHHHHHHHHHHHHhc---HHHHHHHHHHHHH
Confidence 6556667886310000000 00000 00 00000000 0000000011122222 222221222222
Q ss_pred hhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhh
Q 010323 297 LQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQ 376 (513)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (513)
...........+. ...+..|+++...+ ......+++.+++..+.+++.+|++.|+.+.++.++..++......... .
T Consensus 265 ~~~~~~~~~~~f~-~~~~~lG~s~~~~G-~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~-~ 341 (468)
T TIGR00788 265 YANLPGASGSVFC-ATTQCLPGGPSFSG-MSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVK-R 341 (468)
T ss_pred HhhcCCCCceeEE-EEcccCCCCcchhh-hHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeee-c
Confidence 1111111111111 22245899999998 8888888999999999999999999999998888877776654321100 0
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc---
Q 010323 377 LGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK--- 453 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--- 453 (513)
.... ...++.+.......+...+.+..+.+. ..++.+..|++.+|+.+++.+.+.++|..+++.+.+.+.++.|
T Consensus 342 ~~~~--~gi~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~ 418 (468)
T TIGR00788 342 WNLA--FGISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITC 418 (468)
T ss_pred cccc--cCCCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 0000 000122334444555666666666666 4555799999999999999999999999999999999998877
Q ss_pred --hhhhHHHHHHHHHHH---HHHHhhccc
Q 010323 454 --AGIFFFFGGWVVVMT---TFVHFFLPE 477 (513)
Q Consensus 454 --~~~~~~~~~~~~~~~---~~~~~~~~~ 477 (513)
+...+....++.+.. +.....+|+
T Consensus 419 ~~~~~~~~~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 419 DNSNNLWLLILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 444444333333333 333345565
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-21 Score=164.59 Aligned_cols=382 Identities=13% Similarity=0.084 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhH
Q 010323 22 FVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFAS 101 (513)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g 101 (513)
++.+.....|+..|-.+++.-.-+.. ....+.|.+++.++..++.+.|.....+.++++|
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~al--------------------q~~fk~d~ni~~akftLlYsvYSwPNvVlcffgG 100 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPGAL--------------------QIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGG 100 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCchhh--------------------hhhhhcccccceeeeeeeeeeccCCCEEEeeecc
Confidence 44555555566666666554332222 2233667788899999999999999999999999
Q ss_pred HHhhh-hhhHHHHHHHHHHHHHHHHHhh---hchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHH
Q 010323 102 SVTRA-FGRRASILVGGAAFLAGSALGG---AALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYE 177 (513)
Q Consensus 102 ~l~dr-~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 177 (513)
++.|| +|-|..-++-+....++.++.+ ..+.+|.+.++||+.|+|.-..-+. -..|..-|+..|+.+.++|+..
T Consensus 101 flidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVa--QN~yav~wFKGKELn~vfGlql 178 (459)
T KOG4686|consen 101 FLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVA--QNKYAVYWFKGKELNFVFGLQL 178 (459)
T ss_pred eeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhh--hcceeEEEecCccccchhhHHH
Confidence 99996 6887766665555667776665 4689999999999999998877777 7889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccc----CCccchHHH--HHhhHH----HHHHHHHhhcccCCChHHHHHhCCcHHHHHHHHHH
Q 010323 178 LCTAIGILAASLINYGTQKI----KGGWGWRIS--LAMAAA----PALILTLGALFLPETPNSIIQRSNDLQRAKQMLQR 247 (513)
Q Consensus 178 ~~~~~G~~~~~~l~~~~~~~----~~~~~wr~~--f~~~~~----~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~ 247 (513)
...-+|..+-..+..++.+. .+..+-... ...... ..+++....-+. .++|++.+.+
T Consensus 179 SvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~-------------D~rAerilh~ 245 (459)
T KOG4686|consen 179 SVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLS-------------DDRAERILHL 245 (459)
T ss_pred HHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------------hhHHHHHHhh
Confidence 88888876655443333321 111111100 000111 111111111111 1222222221
Q ss_pred HhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHH-HhcCCCchhHHHH
Q 010323 248 IRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLF-RTIKLSESTSLLM 326 (513)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~ 326 (513)
.++.. .+.....+. +.+.++ ++...+..++......-+....|.++ +++|+++..++ .
T Consensus 246 e~g~~-----------------Ge~pkLtdv--~~f~pp-fw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~-~ 304 (459)
T KOG4686|consen 246 EEGFL-----------------GEEPKLTDV--NTFYPP-FWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAG-N 304 (459)
T ss_pred hcCcc-----------------cCCcccccc--cccCcc-HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhcc-c
Confidence 11110 011111111 122233 33333444444444444555556555 56999998888 6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHH-HHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhcc
Q 010323 327 SAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVM-IGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVS 405 (513)
Q Consensus 327 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (513)
+.+.....+.+.+++.|.++||+|++.+.+.+..+..+..-. +.+.. .++ ...+++.+....+.
T Consensus 305 i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~------------lsP---y~~m~~lGLsysll 369 (459)
T KOG4686|consen 305 ILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF------------LSP---YTSMTFLGLSYSLL 369 (459)
T ss_pred hhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh------------ccH---HHHHHHHhhhHHHH
Confidence 666666777888899999999999998877666555444333 33321 222 33444444444433
Q ss_pred ccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcch----hhhHHHHHHHHHHHHHHHhhc
Q 010323 406 WGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKA----GIFFFFGGWVVVMTTFVHFFL 475 (513)
Q Consensus 406 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 475 (513)
....|-.++.+.|+++.|++.|..+...++|-++.|.+.|.+.|+.+. ..+++..+...+......+++
T Consensus 370 -AcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 370 -ACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred -HHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 222355557888999999999999999999999999999999998762 234444444444444444444
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-19 Score=173.40 Aligned_cols=364 Identities=18% Similarity=0.141 Sum_probs=243.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHH-HHHHHHHHHHHHHhhhc--hhHHHHHHHHHHHHhhhhhhhhccc
Q 010323 79 SQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASI-LVGGAAFLAGSALGGAA--LNIYMLIFGRVLLGVGIGFANQASS 155 (513)
Q Consensus 79 ~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~Gi~~~~~~~~~~ 155 (513)
.+..++..++..+..++..|+.|.++|+-|+||.+ .+...+..++++...+. .+++...+.-++.-++.+.....
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vf-- 146 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVF-- 146 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHH--
Confidence 45567888999999999999999999998876655 45555666666666663 34555555566666677777776
Q ss_pred ccceeeccCCCCCc--------------------------cchhhHHHHHHHHHHHHHHHHHhhhcccCC-----ccchH
Q 010323 156 VPLYLSEMAPPRHR--------------------------GAFNIGYELCTAIGILAASLINYGTQKIKG-----GWGWR 204 (513)
Q Consensus 156 ~~~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~-----~~~wr 204 (513)
..+++.|..+++++ ++..+.-.....+|.++.-.+...+....+ ..+-|
T Consensus 147 yna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r 226 (477)
T PF11700_consen 147 YNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIR 226 (477)
T ss_pred HHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhh
Confidence 78899999998888 899988888888888887776555432221 23468
Q ss_pred HHHHhhHHHHHHHHH-hhcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCc
Q 010323 205 ISLAMAAAPALILTL-GALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKY 283 (513)
Q Consensus 205 ~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (513)
..+.+.++.-++..+ ..+++||.|+....+.. ..-.+... + ..++.+|+..
T Consensus 227 ~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~-~~~~~~g~-----------------------~----~l~~t~k~~~ 278 (477)
T PF11700_consen 227 VAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSG-SSYLRFGF-----------------------K----RLWRTFKEIR 278 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcc-hhHHHHHH-----------------------H----HHHHHHHHHH
Confidence 888888887665544 45568887642000000 00000000 0 0111222222
Q ss_pred hhHHHHHHHHHHHhhhcchhhhHhcHHHHHH-hcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcc--hHHHHhHH
Q 010323 284 RPQLVMAILIPFFLQVTGINVIGFYAPVLFR-TIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRK--VLFLVGGI 360 (513)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~ 360 (513)
+.+.....++..++..-+...+......|.+ +.|++..+.. .......+..++|+++.+++.||+|.| +++.+...
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~-~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLI-VFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLI 357 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 3334444555555555566666666666665 7999999888 888888999999999999999999998 77666665
Q ss_pred HHHHHHHHHHH--HHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHH
Q 010323 361 QMLAAQVMIGS--IMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFT 438 (513)
Q Consensus 361 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~ 438 (513)
...+..+.-.+ ... ....++.+.+.+..++.+.+.+... +...++.+|+.|+++.+..+|++...+...+
T Consensus 358 ~~~~i~~~g~~G~~~~-------~~g~~~~~~f~~~a~~~G~~~G~~q-s~sRs~~~~LiP~g~e~efFgly~i~gk~ss 429 (477)
T PF11700_consen 358 LWIIIPLYGLFGFWPS-------FFGLKSPWEFWVLAVLIGLFMGGIQ-SASRSLFSRLIPPGREAEFFGLYAITGKASS 429 (477)
T ss_pred HHHHHHHHHHHHhhhc-------ccCcccHHHHHHHHHHHHHHhhhHH-HHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence 55333322211 100 0012455666667777777766554 4445666899999999999999999999999
Q ss_pred HHHHHHhHHHHHhcc-hhhhHHHHHHHHHHHHHHHhhcccCCCC
Q 010323 439 FLIAQTFLAMLCHFK-AGIFFFFGGWVVVMTTFVHFFLPETKNV 481 (513)
Q Consensus 439 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (513)
+++|.+++.+.+..+ ....+....+.++.++++++.++.+|++
T Consensus 430 ~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g~ 473 (477)
T PF11700_consen 430 WLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKGR 473 (477)
T ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhhh
Confidence 999999999999987 4444555555556666666666554433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-20 Score=180.63 Aligned_cols=329 Identities=12% Similarity=0.074 Sum_probs=196.7
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhh----hhHHHH-HHHHHHHHHHHHHhh-h----ch--hHHHHHHH
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAF----GRRASI-LVGGAAFLAGSALGG-A----AL--NIYMLIFG 139 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~----Grr~~l-~~~~~~~~~~~~~~~-~----~~--~~~~l~~~ 139 (513)
++.+|++..++|.+.+...+..++..++.|+++||. ||||.+ ..+.+...+..++.. . ++ ..+.+++.
T Consensus 36 ~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (448)
T PRK09848 36 TDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLT 115 (448)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHH
Confidence 455688999999999999999999999999999996 777754 555554544444432 1 11 22334455
Q ss_pred HHHHHhhhhhhhhcccccceeeccCC-CCCccchhhHHHHH-----HHHHHHHHHHHHhhhcccCCccchHHHHHhhHHH
Q 010323 140 RVLLGVGIGFANQASSVPLYLSEMAP-PRHRGAFNIGYELC-----TAIGILAASLINYGTQKIKGGWGWRISLAMAAAP 213 (513)
Q Consensus 140 r~l~Gi~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~-----~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~ 213 (513)
-++.+++.+...+. ..++..+..+ +++|.+..+....+ ..++..++|.++........ .+|.....+.+++
T Consensus 116 ~~~~~~~~~~~~~~--~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~-~~~~~~~~~~~v~ 192 (448)
T PRK09848 116 YMGLGLCYSLVNIP--YGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMV-SVYHFWTIVLAIA 192 (448)
T ss_pred HHHHHHHHHHhccc--HhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh-hhHHHHHHHHHHH
Confidence 66778888877766 6667677665 46788776665543 33555666666553321100 1222222233333
Q ss_pred HHHHHHh-hcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHH
Q 010323 214 ALILTLG-ALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAIL 292 (513)
Q Consensus 214 ~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (513)
+++..+. ....||+++. +.+ +...+..+++++++ +.+....
T Consensus 193 ~~~~~~~~~~~~~e~~~~---~~~-------------------------------~~~~~~~~~~l~~n----~~f~~~~ 234 (448)
T PRK09848 193 GMVLYFICFKSTRENVVR---IVA-------------------------------QPSLKISLQTLKRN----RPLFMLC 234 (448)
T ss_pred HHHHHHHHHcCcEeccCC---Ccc-------------------------------CCCHHHHHHHHhCC----chHHHHH
Confidence 3333322 2335665310 000 00001112333332 3333333
Q ss_pred HHHHhhhcchhhhHhcHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHH
Q 010323 293 IPFFLQVTGINVIGFYAPVLFRT-IKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGS 371 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 371 (513)
+..++............|++.++ .|.++.... .......+..+++.++.+++.||+++|+.+.++..+..++.+.+.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~ 313 (448)
T PRK09848 235 IGALCVLISTFAVSASSLFYVRYVLNDTGLFTV-LVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW 313 (448)
T ss_pred HHHHHHHHHHHHHhhhheeeEeeecCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444455556666654 455444333 4444445667888999999999999999999988877777665543
Q ss_pred HHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChh-------hhhhHhHHHHHHHHHHHHHHHHH
Q 010323 372 IMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLE-------IRSAGQSINVAVGFLFTFLIAQT 444 (513)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~~~~~~~~~ 444 (513)
. +..+.+.......+.+.+.+.... ....+.+|..|.+ .+|...|+.+....+|..+++.+
T Consensus 314 ~-----------~~~~~~~~~~~~~l~g~G~~~~~~-~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i 381 (448)
T PRK09848 314 V-----------SVWSLPVALVALAIASIGQGVTMT-VMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSI 381 (448)
T ss_pred c-----------CchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 2 223444444555566666655543 3355556776643 45888999999999999999999
Q ss_pred hHHHHHhcch
Q 010323 445 FLAMLCHFKA 454 (513)
Q Consensus 445 ~~~~~~~~~~ 454 (513)
.+.+.+..|+
T Consensus 382 ~g~~l~~~G~ 391 (448)
T PRK09848 382 PAFILGLSGY 391 (448)
T ss_pred HHHHHHHcCC
Confidence 9998876553
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-18 Score=164.07 Aligned_cols=361 Identities=14% Similarity=0.085 Sum_probs=203.2
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhh-hhHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHhhhhh
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAF-GRRASILVGGAAFLAGSALGGAAL-NIYMLIFGRVLLGVGIGF 149 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~Gi~~~~ 149 (513)
.+++|+++.+.+.+.+.+.....++++++|+++||+ ||||++.++.++..++.++.+..+ +...+.+...+.++|.|.
T Consensus 37 ~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~ 116 (493)
T PRK15462 37 TNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGL 116 (493)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhccc
Confidence 344688999999999999999999999999999999 999999999999999988776543 223344444445566666
Q ss_pred hhhcccccceeeccCCCC--CccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCC
Q 010323 150 ANQASSVPLYLSEMAPPR--HRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPET 227 (513)
Q Consensus 150 ~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 227 (513)
..+. ..++++|.+|++ +|....++...+.++|..++|.+.+.+.+. .|||+.|.+.++..++..+..++..+.
T Consensus 117 ~~~~--~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~---~Gw~~~F~iaaigm~l~li~~~~~~~~ 191 (493)
T PRK15462 117 FKSN--VSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE---YSWAMGFGLAAVGMIAGLVIFLCGNRH 191 (493)
T ss_pred cccc--HHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh---hChHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6666 678899999875 689999999999999999999998887653 579999988766444333332221111
Q ss_pred hHHH-HHhCCcHHHHHHHHHHH---hCCCc----hH-HHHH-HHHHHHHh----------hhhcCCcchhhcccCchhHH
Q 010323 228 PNSI-IQRSNDLQRAKQMLQRI---RGTDD----VE-AEFD-DLIKASSI----------AKTVNHPFKKIIQRKYRPQL 287 (513)
Q Consensus 228 p~~~-~~~~~~~~~~~~~~~~~---~~~~~----~~-~~~~-~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 287 (513)
.... ..+.+..++.+...... .-.-. .. .... +.....-. -.-.. ++ .++..|+|.
T Consensus 192 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~er~r~ 267 (493)
T PRK15462 192 FTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYR---KA-ENQKQRKEL 267 (493)
T ss_pred hccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc-CCHHHHhhH
Confidence 0000 00000010000000000 00000 00 0000 00000000 00000 00 011112222
Q ss_pred H--HHHHHHHHhhhcchhhhHhcHHHHHHh------cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCc--ch----
Q 010323 288 V--MAILIPFFLQVTGINVIGFYAPVLFRT------IKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGR--KV---- 353 (513)
Q Consensus 288 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--~~---- 353 (513)
. ..+++.....+..+.....-+..+.++ .|+.-. .. ...+...+..++.+++..++-.|..| |.
T Consensus 268 ~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip-~~-~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~ 345 (493)
T PRK15462 268 GLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVP-TA-MFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIW 345 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeC-HH-HHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcH
Confidence 2 222222222223333333333444333 232222 22 34455566666666666666555522 21
Q ss_pred -HHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHH
Q 010323 354 -LFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVA 432 (513)
Q Consensus 354 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 432 (513)
-+.++.++++++.+.+.+..... .++ ...+.++.+....+...+ ....+|+..+.++++.|++.+|..+|+...
T Consensus 346 ~Kfa~g~~~~g~~f~~l~~~~~~~-~~~---~~~s~~wl~~~~~~~t~g-El~~sPvgls~~~~laP~~~~g~~mg~w~l 420 (493)
T PRK15462 346 GKFALGLGLMSAGFCILTLSARWS-AMY---GHSSLPLMVLGLAVMGFA-ELFIDPVAMSQITRIEIPGVTGVLTGIYML 420 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-CCC---CCcCHHHHHHHHHHHHHH-HHHHChHHHHHHHHhChHHHHHHHHHHHHH
Confidence 25667777777776665433211 111 113445555555556555 566688888888999999999999999866
Q ss_pred HH-HHHHHHHHHHhHHH
Q 010323 433 VG-FLFTFLIAQTFLAM 448 (513)
Q Consensus 433 ~~-~~~~~~~~~~~~~~ 448 (513)
.. .++..++..+.+..
T Consensus 421 ~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 421 LSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 43 56666666655544
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-18 Score=159.16 Aligned_cols=276 Identities=11% Similarity=0.093 Sum_probs=191.8
Q ss_pred hhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCC--------
Q 010323 128 GAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKG-------- 199 (513)
Q Consensus 128 ~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~-------- 199 (513)
+...+|+.++++-++.|.|.+...+. ...++++..++|++.+.+++.+...++|..++|.+++.+.....
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~--~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~ 82 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVA--ANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVA 82 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhh--HHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhh
Confidence 35578999999999999999999999 99999999999999999999999999999999999887663210
Q ss_pred -----ccchHHHHHhhHHHHHHHHHhhcc--cCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcC
Q 010323 200 -----GWGWRISLAMAAAPALILTLGALF--LPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVN 272 (513)
Q Consensus 200 -----~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (513)
..+||++|++.+.+.++..+.+.+ +||.++ +++ ++. . +++ .
T Consensus 83 ~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~----~~~--~~~------------------------~-~~~-~ 130 (310)
T TIGR01272 83 TANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE----ADV--ARV------------------------S-SGD-T 130 (310)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc----ccc--ccc------------------------c-ccc-c
Confidence 147999999776665554444333 455321 000 000 0 000 0
Q ss_pred CcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHh---cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010323 273 HPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRT---IKLSESTSLLMSAVVTGGIGTLSTIISMILVDKL 349 (513)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 349 (513)
...++ ..+++.++...+..++..........|.+.|+++ .|+++.+.+ ........+.++|+++++++.||+
T Consensus 131 ~~~~~----~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~-~~~s~~~~~~~iGr~~~~~l~~r~ 205 (310)
T TIGR01272 131 TQKTS----AFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAA-HFTAYTWGGAMVGRFIGSAVMPMI 205 (310)
T ss_pred cchhh----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00011 1223344455666666666777888899999864 478888888 778889999999999999999999
Q ss_pred CcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHH
Q 010323 350 GRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSI 429 (513)
Q Consensus 350 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 429 (513)
++|+.+.++..+..++.+++... +. ........+.+++.+..++.. .....+..|++ .+++.++
T Consensus 206 g~~~~l~~~~~l~~~~~~l~~~~-------------~~-~~~~~~~~l~g~~~s~i~P~~-~s~a~~~~~~~-~~~asai 269 (310)
T TIGR01272 206 SQGRYLAFNAFLAVLLSIGAALT-------------HG-YVAMWFVLALGLFNSIMFPTI-FSLALNALGRH-TSQGSGI 269 (310)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc-------------CC-HHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhh-hhhhHHH
Confidence 99998877776666655433321 11 222334456666666666544 44445666643 4566676
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhcchhhhHH
Q 010323 430 NVAVGFLFTFLIAQTFLAMLCHFKAGIFFF 459 (513)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (513)
. ..+.+|+++.|.+.|.+.|..+....+.
T Consensus 270 ~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 270 L-CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred H-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 4 5788999999999999999887544333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=162.55 Aligned_cols=353 Identities=18% Similarity=0.138 Sum_probs=213.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHH--HHHHH-Hhhhc----hhHH-HHHHHHHHHHhh
Q 010323 75 CKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAF--LAGSA-LGGAA----LNIY-MLIFGRVLLGVG 146 (513)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~--~~~~~-~~~~~----~~~~-~l~~~r~l~Gi~ 146 (513)
-|+|.+++|.+.++..+...+.+|+.|.++||+|.||-++....+. ..+.+ ...+. .|.+ ..+++-+..|+.
T Consensus 38 ~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~ 117 (412)
T PF01306_consen 38 AGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLV 117 (412)
T ss_dssp H---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4779999999999999999999999999999999766554433222 22222 22222 2221 222223333443
Q ss_pred hhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhccc-C
Q 010323 147 IGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFL-P 225 (513)
Q Consensus 147 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~ 225 (513)
.....|. .-+++.++. ++.+.-.|-.-...++|.+++..+++.+... +-+..||+....+++..++.++. |
T Consensus 118 f~~~~~~--~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i----~p~~~fwi~s~~~~il~lll~~~~~ 189 (412)
T PF01306_consen 118 FNAGVPL--SEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI----NPNIIFWIASAAAIILLLLLLLLKP 189 (412)
T ss_dssp TTTHHHH--HHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHSS--
T ss_pred HcccchH--HHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee----CccHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333444 434443332 2234445555566677777777777766553 34677787766665555444443 3
Q ss_pred CChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhh
Q 010323 226 ETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVI 305 (513)
Q Consensus 226 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (513)
+.++.....+. ...++++.+.++..+..+.+ .++.+.+........+..+
T Consensus 190 ~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~l~k~~-~fw~~~l~v~g~~~~Y~vf 239 (412)
T PF01306_consen 190 DVPPQAEVADA-----------------------------LGAKKDKVSLKDVLSLFKMR-NFWFFVLFVIGVAAIYDVF 239 (412)
T ss_dssp -SSSSS-SSTT-----------------------------SSS------HHHHHHHTTSH-HHHHHHHHHHHHHHHHHHH
T ss_pred cCchhhhhhcc-----------------------------cccCCCCCcHHHHHHHhcch-hHHHHHHHHHHHHHHHHHH
Confidence 33211000000 00111122334433322223 3333333333333444555
Q ss_pred HhcHHHHHHhcCCC----chhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCC
Q 010323 306 GFYAPVLFRTIKLS----ESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQG 381 (513)
Q Consensus 306 ~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (513)
....+.|...+.-+ ....+ ...+...+..++.-.+..++.+|+|.|+.++++..++.+=....++.
T Consensus 240 dqqf~~y~~~~f~~~~~g~~~~G-~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~--------- 309 (412)
T PF01306_consen 240 DQQFPIYFASFFQSAGQGNQMYG-YLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA--------- 309 (412)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHHHHhcccccChhHHh-HHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh---------
Confidence 55556666554333 23334 77778888899999999999999999999999999988888877765
Q ss_pred CCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHH-HHHHHHHHHHHHHHhHHHHHhcch-hhhHH
Q 010323 382 GFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSIN-VAVGFLFTFLIAQTFLAMLCHFKA-GIFFF 459 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 459 (513)
++.+.....-.+.+.-+.....+. .-++++.+|++..++...+. +...+++..+.+.+.|.+.|+.|. ..+++
T Consensus 310 ----~~~~~i~~~klLH~~e~~l~lva~-fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tyli 384 (412)
T PF01306_consen 310 ----TNPWVISLIKLLHALEFPLLLVAA-FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLI 384 (412)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cchHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHH
Confidence 567777777777777776665444 55668999999999999885 577889999999999999999995 46777
Q ss_pred HHHHHHHHHHHHHhhcccCCC
Q 010323 460 FGGWVVVMTTFVHFFLPETKN 480 (513)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~ 480 (513)
.+.+.+...++..+.++++++
T Consensus 385 mg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 385 MGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHHheeeecCCCc
Confidence 777777777777777765544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-17 Score=148.98 Aligned_cols=354 Identities=14% Similarity=0.066 Sum_probs=235.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHH-HHHHHHHHHHHHHHHhhhchh--H-HHHHHHHHHHHhhhhhhhhc
Q 010323 78 DSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRA-SILVGGAAFLAGSALGGAALN--I-YMLIFGRVLLGVGIGFANQA 153 (513)
Q Consensus 78 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~~--~-~~l~~~r~l~Gi~~~~~~~~ 153 (513)
+.+..+...++..+..++.+|+.|.++|+.|+|| .+-....+..++.++..++++ + +..++.-.+..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 5678889999999999999999999999999765 455566666677777777655 4 44555577788888777777
Q ss_pred ccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhh---hc------------ccCCccchHHHHHhhHHHHHHHH
Q 010323 154 SSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYG---TQ------------KIKGGWGWRISLAMAAAPALILT 218 (513)
Q Consensus 154 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~---~~------------~~~~~~~wr~~f~~~~~~~~~~~ 218 (513)
-.+++.+..++++-++..+.-.....+|..+.-..... .. +..+...=|..+.+.++.-++..
T Consensus 136 --yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~ 213 (438)
T COG2270 136 --YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFA 213 (438)
T ss_pred --hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHH
Confidence 88899999998888877666555555555444333211 11 01133467888888888776655
Q ss_pred Hh-hcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHh
Q 010323 219 LG-ALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFL 297 (513)
Q Consensus 219 ~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (513)
+- +++.++.++-. .. ..++. ... -++-+.+++++.++ +.+....+..+.
T Consensus 214 iPm~~~v~~~~~~~---~~-~~~~l------------~~g----------~k~L~~t~k~i~~~----~~i~~FLiA~~~ 263 (438)
T COG2270 214 LPMILNVHDAEKIS---SP-PPTAL------------RNG----------FKELKSTFKEIRGR----KNLVLFLIARFF 263 (438)
T ss_pred hHHHhccccccccc---cc-chHHH------------HHH----------HHHHHHHHHHHhcc----cchHHHHHHHHH
Confidence 54 44566654210 00 00000 000 01112223333322 233334444444
Q ss_pred hhcchhhhHhcHHHHHH-hcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhh
Q 010323 298 QVTGINVIGFYAPVLFR-TIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQ 376 (513)
Q Consensus 298 ~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (513)
..-+..........+-. ++|++..+.. .......+..++++++.|++.||+|.|+++..+.++..+..+...+.
T Consensus 264 ~~DGv~til~~~~~fg~~~~gls~~~ll-l~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~---- 338 (438)
T COG2270 264 YIDGVNTILAMGGVFGAADLGLSSTELL-LIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL---- 338 (438)
T ss_pred HHhhHHHHHHHHHHHHHHHcCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc----
Confidence 44556666666667765 7999998888 88888899999999999999999999999888888777766655443
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcch-h
Q 010323 377 LGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKA-G 455 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 455 (513)
.......++..+.+...+... ...-.+..+..|+++.+..+|+++..++..++++|...+.+.+.++. .
T Consensus 339 ---------~~~~~f~i~gll~g~s~G~~q-A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r 408 (438)
T COG2270 339 ---------EGELDFWILGLLVGTSLGGAQ-ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSR 408 (438)
T ss_pred ---------cccHHHHHHHHHHHHhcchHH-HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchh
Confidence 223333444455555555443 33456668999999999999999999999999999999999998874 3
Q ss_pred hhHHHHHHHHHHHHHHHhhcccC
Q 010323 456 IFFFFGGWVVVMTTFVHFFLPET 478 (513)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~ 478 (513)
.-+....+.+..+++.++..|+.
T Consensus 409 ~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 409 AGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred hHHHHHHHHHHhhHhhEEeecCC
Confidence 33344444455555555555544
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=156.42 Aligned_cols=404 Identities=14% Similarity=0.130 Sum_probs=242.9
Q ss_pred cCCcchHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHH
Q 010323 15 YNGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGL 94 (513)
Q Consensus 15 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~ 94 (513)
++++.+|+...++. +-+++.+.+.+++.+. +.++.++. |.+.+.+..|++.++..++.+
T Consensus 27 ~~~~t~wrsi~l~~---~~sfl~~v~~sI~~~s--~wpYl~~l----------------D~~A~~~ffG~viaa~slg~~ 85 (488)
T KOG2325|consen 27 DERKTNWRSIYLAL---LNSFLVAVQFSIYLTS--MWPYLQKL----------------DPTATATFFGLVIAASSLGHA 85 (488)
T ss_pred cccCCchHhHHHHH---HHHHHHhhhheEEEee--cchhhhhc----------------CCCCCcchhhHHHHHHHHHHH
Confidence 34455666655554 4446667777766544 33333332 345688999999999999999
Q ss_pred HHHHHhHHHhhhhhh-HHHHHHHHHHHHHHHHHh-hhc---h-hHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCC
Q 010323 95 IASLFASSVTRAFGR-RASILVGGAAFLAGSALG-GAA---L-NIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRH 168 (513)
Q Consensus 95 i~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~-~~~---~-~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~ 168 (513)
++++.+|++..|.|. |+.++.+.++..+++++. ++. + ..+.++++|++.|+|.+.... .-+|+++....++
T Consensus 86 i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~---lR~Y~a~~s~~~d 162 (488)
T KOG2325|consen 86 IFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAV---LRAYIADASTVED 162 (488)
T ss_pred hcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHH---HHHHHHhccCccc
Confidence 999999999999987 888999999999999988 332 3 578999999999999886644 6789999988899
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhhcccCCc-------c---chHHHHHhhHHHHHHHHHhh-cccCCChHHHHHhCCc
Q 010323 169 RGAFNIGYELCTAIGILAASLINYGTQKIKGG-------W---GWRISLAMAAAPALILTLGA-LFLPETPNSIIQRSND 237 (513)
Q Consensus 169 r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~-------~---~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~ 237 (513)
|.++++....+..+|.++||.++..+..+.+. . -+..+-|+.+++.++.++.. .+++|.++...+++.+
T Consensus 163 R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~ 242 (488)
T KOG2325|consen 163 RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKR 242 (488)
T ss_pred hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccc
Confidence 99999999999999999999998887765431 1 12346677777777765544 4477765422111110
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhh-hHhcHHHHHHhc
Q 010323 238 LQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINV-IGFYAPVLFRTI 316 (513)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 316 (513)
.+ + +++.+.+ +.-..+..+...+.+.+..+.....+.. -....+..+..+
T Consensus 243 ~~-------------------~---~~~~~~~-------~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y 293 (488)
T KOG2325|consen 243 SV-------------------E---EEKSDIE-------KVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMY 293 (488)
T ss_pred cc-------------------h---hhccchh-------hhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHh
Confidence 00 0 0000000 0001112222233333333333333333 444555666677
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHH-Hhhh---ccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCC--------CC
Q 010323 317 KLSESTSLLMSAVVTGGIGTLSTIISM-ILVD---KLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGG--------FS 384 (513)
Q Consensus 317 g~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 384 (513)
+.+.+++.........+.+++...+.. +..- ++.+|+.+..+......+..+.......+..+.+. ..
T Consensus 294 ~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~ 373 (488)
T KOG2325|consen 294 GWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDF 373 (488)
T ss_pred ccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCc
Confidence 887777664444444444444443332 2222 33345555544333333333322221111101000 00
Q ss_pred ----------cchhHH-HHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc
Q 010323 385 ----------KGNAYL-ILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK 453 (513)
Q Consensus 385 ----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (513)
..+.+. ......+++.++-....+....+ +|...++.++++.|++...+..+..++|.+........|
T Consensus 374 ~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tly-SkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g 452 (488)
T KOG2325|consen 374 EEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLY-SKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG 452 (488)
T ss_pred ccchhhccCcccChhhheeehhheeccccccccchHHHHH-HHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcC
Confidence 001111 11112223333332223344455 799999999999999999999999999999999988888
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 010323 454 AGIFFFFGGWVVVMTTFVH 472 (513)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~ 472 (513)
....+.......++....+
T Consensus 453 ~~~v~~~~~~~~l~~~~l~ 471 (488)
T KOG2325|consen 453 PRPVWIILLCLLLVVAALW 471 (488)
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 7776666555555444443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-15 Score=141.36 Aligned_cols=391 Identities=17% Similarity=0.134 Sum_probs=227.6
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhh-hhHHHHHHHHHHHHHHHHHhhhch--hHHHHHHHHHHHHhhhh
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAF-GRRASILVGGAAFLAGSALGGAAL--NIYMLIFGRVLLGVGIG 148 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~Gi~~~ 148 (513)
.+.+|+++++..-+.+.|..-.-+...++|+++||+ |+|+++.+|.++..+|.++.+.+. +...+.++-.+.++|.|
T Consensus 53 ~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~G 132 (498)
T COG3104 53 GDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTG 132 (498)
T ss_pred cccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccc
Confidence 334789999999999999988889999999999995 999999999999999999999984 78899999999999999
Q ss_pred hhhhcccccceeeccCCCC--CccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccC-
Q 010323 149 FANQASSVPLYLSEMAPPR--HRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLP- 225 (513)
Q Consensus 149 ~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~- 225 (513)
..-+. ...+++|.+|++ +|-..++++..+.++|+.++|.+.+.+... .||+..|.+.++-..+.++..+..+
T Consensus 133 l~K~N--iS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~---~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 133 LFKPN--ISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN---YGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred ccccc--HHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99988 999999999854 366788999999999999999997777654 5799999988876665554433322
Q ss_pred --------CChHHHHHhCCcHHHHHHHHHHHhCC---Cch-HHHHHHHHHH----HHh-hhhcCCcchhhcccCchhHH-
Q 010323 226 --------ETPNSIIQRSNDLQRAKQMLQRIRGT---DDV-EAEFDDLIKA----SSI-AKTVNHPFKKIIQRKYRPQL- 287 (513)
Q Consensus 226 --------e~p~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~- 287 (513)
+.|..+..+.. ...........-.. ... .......... ... --.+.....+.. ..|+|.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~er~r~~ 284 (498)
T COG3104 208 HVKGIGGVPDPNPLSFNFL-LPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF--DERRRLL 284 (498)
T ss_pred hhcCCCCCCCccchhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH--HHHHHHH
Confidence 11111100000 00000000000000 000 0000000000 000 000000011100 111221
Q ss_pred -----HHHHHHHHHhhhcchhhhHhcHHHHHHh--cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcc-------h
Q 010323 288 -----VMAILIPFFLQVTGINVIGFYAPVLFRT--IKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRK-------V 353 (513)
Q Consensus 288 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-------~ 353 (513)
++...+.+.+.......+..+.....++ .|++-.. . ...+...+.-++.+++..++..|.+++ .
T Consensus 285 ~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~-~-~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~ 362 (498)
T COG3104 285 AAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPP-A-WFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPI 362 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCH-H-HHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcch
Confidence 1112222222222222333333333222 2222221 2 344555555666666666666664322 2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHH
Q 010323 354 LFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAV 433 (513)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 433 (513)
-+-++..+++.+.+++......... +.+..+.++.+....+..++ ....+|+...++..+.|+...+..++.....
T Consensus 363 KFalGl~l~g~~fl~l~~~~~~~~~---~~~~~s~~~lil~y~l~s~g-EL~iSpvGLs~~t~laP~~~~s~~ma~wfLt 438 (498)
T COG3104 363 KFALGLILAGLGFLILLLAGIWFGG---PSGLVSVWWLVLSYVLQSFG-ELFISPVGLSMVTKLAPPALKSFIMAMWFLT 438 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC---CCCCcCHHHHHHHHHHHHHH-HHHhCHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 2445555556655555544222111 12334566666666666655 5666888888889999999999999988887
Q ss_pred HHHHHHHHHHHhHH------HHHhcc-hhhhHHHHHHHHHHHHHHHhhcc
Q 010323 434 GFLFTFLIAQTFLA------MLCHFK-AGIFFFFGGWVVVMTTFVHFFLP 476 (513)
Q Consensus 434 ~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 476 (513)
...+..++..+.+. ..+... ...++..+.+..+.........|
T Consensus 439 ~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 439 VAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred HHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 77777777776662 222222 33455555555555555444433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-16 Score=154.82 Aligned_cols=367 Identities=15% Similarity=0.121 Sum_probs=253.2
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhc-----------------
Q 010323 68 DTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAA----------------- 130 (513)
Q Consensus 68 ~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------------- 130 (513)
...|++.|+++.++.|++.+.+=++..+...+..+..-|.-|-|.+-+|+++.+++++++++-
T Consensus 120 IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~ 199 (735)
T KOG3626|consen 120 ITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQS 199 (735)
T ss_pred hhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhcc
Confidence 456789999999999999999999999999999999999999999999999999999998872
Q ss_pred ---h---------------------------h----HH-HHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhH
Q 010323 131 ---L---------------------------N----IY-MLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIG 175 (513)
Q Consensus 131 ---~---------------------------~----~~-~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 175 (513)
+ . ++ .++++.++.|+|....++. ..+|+-|...+++-+..+|+
T Consensus 200 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl--GisYiDDnvk~~~SplYlgi 277 (735)
T KOG3626|consen 200 VENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL--GISYIDDNVKKKNSPLYLGI 277 (735)
T ss_pred ccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC--CCccccccccccCCcHHHHH
Confidence 0 0 22 5777899999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCcc----------------chHHHHHhhHHHHHHHHHhhcccCCChHHHHHhCCcHH
Q 010323 176 YELCTAIGILAASLINYGTQKIKGGW----------------GWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQ 239 (513)
Q Consensus 176 ~~~~~~~G~~~~~~l~~~~~~~~~~~----------------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~ 239 (513)
......+|.++|.++|+++..+..++ .|..-|++.+.+.++..+.++++|.+.+....+ .
T Consensus 278 ~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~----~ 353 (735)
T KOG3626|consen 278 LYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKR----K 353 (735)
T ss_pred HHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcccccc----c
Confidence 99999999999999999886542211 477788888888888888888887654211100 0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcch---hhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHH-h
Q 010323 240 RAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFK---KIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFR-T 315 (513)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 315 (513)
+++ ..+..+.+++ ..+.........+ +.+++...++++....+...+....+..+.+|+|-|++ +
T Consensus 354 ~~~-~~~~~k~~~~----------~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Q 422 (735)
T KOG3626|consen 354 RAR-DLHVLKTESG----------GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQ 422 (735)
T ss_pred hhh-hhcccccccc----------cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHH
Confidence 000 0000000000 0000001111122 22345556778888888888888888999999999986 5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccC--cchHHHHhHHHHHHHHHHHHHHHHhh-----------------
Q 010323 316 IKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLG--RKVLFLVGGIQMLAAQVMIGSIMENQ----------------- 376 (513)
Q Consensus 316 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 376 (513)
+|.++..+..+...+..-+..+|.+++|+++.|+. .|....+..+...+.++.........
T Consensus 423 fg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~ 502 (735)
T KOG3626|consen 423 FGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSP 502 (735)
T ss_pred cCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCcccceecCCCCCC
Confidence 89998888844445555566778899999999975 44555544444444444422222110
Q ss_pred -----------------------------------------------cC------------C----CC--------CCC-
Q 010323 377 -----------------------------------------------LG------------D----QG--------GFS- 384 (513)
Q Consensus 377 -----------------------------------------------~~------------~----~~--------~~~- 384 (513)
.. + .+ +.+
T Consensus 503 ~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c 582 (735)
T KOG3626|consen 503 AFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDC 582 (735)
T ss_pred ccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCceeecCCCCCCc
Confidence 00 0 00 000
Q ss_pred cchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHH-HHHHHHHHHhHHHHHhc
Q 010323 385 KGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGF-LFTFLIAQTFLAMLCHF 452 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~ 452 (513)
......+++..++..+..+.+..|... ++-..+|++.|..++|+..++.+ +|.+-+|.++|+++|..
T Consensus 583 ~~~~~~Fl~~~~~~sf~~~~~~~p~~~-i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~t 650 (735)
T KOG3626|consen 583 CRQFLIFLALFAIGSFIGALGAVPGML-IVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDTT 650 (735)
T ss_pred chhhHHHHHHHHHHHHHHHhccCcceE-EEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhhH
Confidence 112233344444444444445455534 44589999999999999988766 56666999999999853
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.5e-19 Score=173.02 Aligned_cols=376 Identities=16% Similarity=0.145 Sum_probs=3.0
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhch----------------
Q 010323 68 DTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAAL---------------- 131 (513)
Q Consensus 68 ~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---------------- 131 (513)
...+++.|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-.|.++.+++++++++-+
T Consensus 26 lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~ 105 (539)
T PF03137_consen 26 LTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNG 105 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccc
Confidence 4577999999999999999999999999999999999998888899999999999998887620
Q ss_pred ----------------------------------hHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHH
Q 010323 132 ----------------------------------NIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYE 177 (513)
Q Consensus 132 ----------------------------------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 177 (513)
-++.+++++++.|+|....++. ..+|+-|..++++-+...|+..
T Consensus 106 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tL--G~tYiDDnv~~~~splYiGi~~ 183 (539)
T PF03137_consen 106 NSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTL--GITYIDDNVSKKNSPLYIGILY 183 (539)
T ss_dssp ----------------------------------------------SSS-------------------------------
T ss_pred ccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccc--eeeeeccccccccCccchhhhh
Confidence 0366888999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCC---------------cc----chHHHHHhhHHHHHHHHHhhcccCCChHHHHHhCCcH
Q 010323 178 LCTAIGILAASLINYGTQKIKG---------------GW----GWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDL 238 (513)
Q Consensus 178 ~~~~~G~~~~~~l~~~~~~~~~---------------~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~ 238 (513)
+...+|.++|.++|+.+..... +. .|-.-|++.+++.++..+..+++|+.-+...+. .
T Consensus 184 ~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~---~ 260 (539)
T PF03137_consen 184 AMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSER---Q 260 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccc---c
Confidence 9999999999999987764321 01 366667777777776666666676543211000 0
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHH-hcC
Q 010323 239 QRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFR-TIK 317 (513)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g 317 (513)
++.+...++. .+..+.+..+. +..+...+..+.+...+++..+++.++...+...........+.++.|.|+| +++
T Consensus 261 ~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~ 337 (539)
T PF03137_consen 261 EEKESSERKE--EDSDKDSFKDP-KSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFG 337 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhhhhcch--hhhhhhccccc-ccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0000000000 00000000000 0000001111223333446677888888888888888888899999999986 488
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhccC--cchHHHHhHHHHHHHHHHHHHHHHhhcC----------C------
Q 010323 318 LSESTSLLMSAVVTGGIGTLSTIISMILVDKLG--RKVLFLVGGIQMLAAQVMIGSIMENQLG----------D------ 379 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~------ 379 (513)
.++..+..+......-+..+|.+++|++.+|++ .|+.+....+...+..+.+........+ .
T Consensus 338 ~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~ 417 (539)
T PF03137_consen 338 LSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSS 417 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCC
Confidence 888888744444455577789999999999985 4454444444444433331111111000 0
Q ss_pred ----------------------CCCCCc---chhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHH
Q 010323 380 ----------------------QGGFSK---GNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVG 434 (513)
Q Consensus 380 ----------------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 434 (513)
.+.-+. .....+++..++..+..+....|..... -..+|+++|+.+.|+...+.
T Consensus 418 ~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~-LR~V~~~~rs~AlGv~~~~~ 496 (539)
T PF03137_consen 418 SPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLIT-LRCVPPEQRSFALGVQWLII 496 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheee-eccCChhhcchhhhHHHHHH
Confidence 000001 1223333444444444455555654444 48899999999999998876
Q ss_pred H-HHHHHHHHHhHHHHHhc
Q 010323 435 F-LFTFLIAQTFLAMLCHF 452 (513)
Q Consensus 435 ~-~~~~~~~~~~~~~~~~~ 452 (513)
+ +|..-+|.++|.++|..
T Consensus 497 rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 497 RLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp -------------------
T ss_pred HhhcCcchHHHHhHHHhhh
Confidence 6 56677999999999865
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-14 Score=132.86 Aligned_cols=328 Identities=14% Similarity=0.064 Sum_probs=214.3
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhh-----hHHHHH-HHHHHHHHHHHHhhhc-----h--------
Q 010323 71 ISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFG-----RRASIL-VGGAAFLAGSALGGAA-----L-------- 131 (513)
Q Consensus 71 i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G-----rr~~l~-~~~~~~~~~~~~~~~~-----~-------- 131 (513)
|..|++++....+.+.+...+.. ...+.+|+.+|+.+ ||..++ .|..+...+..+..++ .
T Consensus 6 MIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 45677889999999999988765 46899999999999 886654 4666666655555443 2
Q ss_pred h-HH--HHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHH
Q 010323 132 N-IY--MLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLA 208 (513)
Q Consensus 132 ~-~~--~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~ 208 (513)
. .+ ...+.-.+.|+|.+..... ..++++|..|+|+|+++.++......+|.+++..+.+.+.+-.+ .-|..-.
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~--~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s--~~rL~~v 160 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTS--FLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS--PERLIQV 160 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHH--HHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC--HHHHHHH
Confidence 1 22 2334456678888887777 88999999999999999999999999999999988776554322 1232222
Q ss_pred hh--HHHHHHHHHhhcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCC----cchhhcccC
Q 010323 209 MA--AAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNH----PFKKIIQRK 282 (513)
Q Consensus 209 ~~--~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 282 (513)
+. +++.+...++..+=.|.+..... +.+++++. .+++...++
T Consensus 161 ~~~~a~i~~~l~~ia~wg~E~r~~~~~--------------------------------~~~~~~~~~f~~a~~~~~~~~ 208 (403)
T PF03209_consen 161 IQGVALIALLLNLIALWGQEPRRSRRA--------------------------------AAAERPRPPFREAWRQVWASP 208 (403)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCcccc--------------------------------cCCCCCCccHHHHHHHHHhCC
Confidence 22 22222222333332332210000 00011122 233344344
Q ss_pred chhHHHHHHHHHHHhhhcchhhhHhcH-HHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh-ccCcchHHHHhHH
Q 010323 283 YRPQLVMAILIPFFLQVTGINVIGFYA-PVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVD-KLGRKVLFLVGGI 360 (513)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~ 360 (513)
..++.+...++..+.. +..-..+ |+=-+.+|++..+.. ......+.+..++-...+++.. |.++++...++..
T Consensus 209 ~a~~f~~fl~l~t~a~----~~QD~iLEPygg~Vfgmsv~eTT-~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~ 283 (403)
T PF03209_consen 209 QARRFFVFLFLGTLAF----FMQDVILEPYGGEVFGMSVGETT-RLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCL 283 (403)
T ss_pred ChhHHHHHHHHHHHHH----HhhHHHcCCchhHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 4444444333332221 1111111 222245899999888 8888888999999988888766 6778888878888
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHH
Q 010323 361 QMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFL 440 (513)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 440 (513)
...++..++.... ...+.+.+.....+++++.+.........+ .+..++++.|..+|.-...+.+...+
T Consensus 284 ~~~~~f~lii~a~----------~~~~~~~~~~~~~l~G~g~G~f~vgals~m-M~lt~~~~aG~~mG~WGaaQA~A~Gl 352 (403)
T PF03209_consen 284 LGALAFALIILAG----------PLGSPWLFRPGVFLLGLGNGLFTVGALSLM-MDLTSAGRAGLFMGAWGAAQAIARGL 352 (403)
T ss_pred HHHHHHHHHHHHH----------hcccchHHHHHHHHHHHhhhHHHHHHHHHH-HhCCCCcchhHHHHHHHHHHHHHHHH
Confidence 8777777666553 224577777888888888776655444444 58888899999999988888888888
Q ss_pred HHHHhHHHHHh
Q 010323 441 IAQTFLAMLCH 451 (513)
Q Consensus 441 ~~~~~~~~~~~ 451 (513)
+....|.+.|-
T Consensus 353 g~~~GG~~~D~ 363 (403)
T PF03209_consen 353 GTFLGGALRDL 363 (403)
T ss_pred HHHHHHHHHHH
Confidence 88888877764
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.3e-16 Score=154.14 Aligned_cols=173 Identities=15% Similarity=0.107 Sum_probs=128.4
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHH---hhhchhHHHHHHHHHHHHhhhhhh
Q 010323 74 YCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSAL---GGAALNIYMLIFGRVLLGVGIGFA 150 (513)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~Gi~~~~~ 150 (513)
++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+. ...+++...++++|++.|++.+..
T Consensus 280 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 359 (490)
T PRK10642 280 NLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCF 359 (490)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 34667777888888888999999999999999999999988877654433322 223456777888899998877766
Q ss_pred hhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCChHH
Q 010323 151 NQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNS 230 (513)
Q Consensus 151 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~ 230 (513)
... ...++.|.+|++.|+++++.......++..++|.+.+.+.+.. .+|+.++++..+++++..+..+++||+|+|
T Consensus 360 ~g~--~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~--~~~~~~~~~~~~~~~i~~~~~~~~pes~~~ 435 (490)
T PRK10642 360 TGV--MASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST--QNLMMPAYYLMVVAVIGLITGVTMKETANR 435 (490)
T ss_pred HHH--HHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 665 6677889999999999999744444555667777766554322 247877777777777766666778999998
Q ss_pred HHHh----CCcHHHHHHHHHHHhC
Q 010323 231 IIQR----SNDLQRAKQMLQRIRG 250 (513)
Q Consensus 231 ~~~~----~~~~~~~~~~~~~~~~ 250 (513)
+.++ +++.+|+++.+++++.
T Consensus 436 ~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 436 PLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred CCCCccccccchhhHHHHhhcccc
Confidence 7754 2337889999988873
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-13 Score=129.87 Aligned_cols=319 Identities=14% Similarity=0.132 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhh--hhhhcccccceeeccCC
Q 010323 88 SLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIG--FANQASSVPLYLSEMAP 165 (513)
Q Consensus 88 ~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~--~~~~~~~~~~~i~~~~~ 165 (513)
...+...+.++..|.++||+|||..+.+..+...+..++..+.. +|.++ +.|+..+ ..... ..++++|...
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~--~~a~vadis~ 142 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSV--GFAYVADISS 142 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhh--hhhheeeccc
Confidence 44667788899999999999999999999999888888777766 33333 4444333 33444 7889999999
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhh-cccCCChHHHHHhCCcHHHHHHH
Q 010323 166 PRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGA-LFLPETPNSIIQRSNDLQRAKQM 244 (513)
Q Consensus 166 ~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~ 244 (513)
.++|....++.......+..++|.+++..... .|.-..|.+..+..++..+.. .++||+-....+. + ..
T Consensus 143 ~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~---~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~-----~--~~ 212 (463)
T KOG2816|consen 143 EEERSSSIGLLSGTFGAGLVIGPALGGYLVKF---LGIALVFLIAAASGILSLLYMLLFLPESLQEKERS-----D--AT 212 (463)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHHHhhccccccCccccc-----c--cc
Confidence 99999999999999999999999999887765 356778888888777766554 4588874211000 0 00
Q ss_pred HHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHH-HhcCCCchhH
Q 010323 245 LQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLF-RTIKLSESTS 323 (513)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~ 323 (513)
.+..... ..........++...+...++..+.......+..........-..++++ ..++++..+.
T Consensus 213 ~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~ 279 (463)
T KOG2816|consen 213 LRELTPG-------------SLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEF 279 (463)
T ss_pred ccccCCC-------------cccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHH
Confidence 0000000 0000000111111211111222222222222222211111110112233 3478888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhh
Q 010323 324 LLMSAVVTGGIGTLSTIISM-ILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGF 402 (513)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~g-~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (513)
+ ...+.......++..+.. .+...++.|+....+...-.+....+.+. +..|.......+..+.
T Consensus 280 s-~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-------------~~~w~~~~~~v~~~~~- 344 (463)
T KOG2816|consen 280 S-DLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-------------TETWMMFAAGVVVALA- 344 (463)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh-------------ccchhhhHHHHHHHhh-
Confidence 8 666677777777777666 77788898998888888888888888776 3444444433333322
Q ss_pred hccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhc
Q 010323 403 AVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHF 452 (513)
Q Consensus 403 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 452 (513)
. ...+...+..+...+++.+|++.++...+..+.+.++|.+.+.+...+
T Consensus 345 ~-~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 345 G-IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred c-chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 2 223454566678888999999999999999999999999999887544
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=118.78 Aligned_cols=136 Identities=29% Similarity=0.387 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCC
Q 010323 86 TSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAP 165 (513)
Q Consensus 86 ~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~ 165 (513)
.+.+.++..++.++.|++.||+|||+.+..+..+..++.+...++++++.+.+.+++.|++.+...+. ...++.|.+|
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~ 81 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVA--GAALIADIYP 81 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHCC
Confidence 34567788899999999999999999999999999999999989999999999999999999998888 8889999999
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcc-cCC
Q 010323 166 PRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALF-LPE 226 (513)
Q Consensus 166 ~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 226 (513)
+++|++..++......+|..+++.+++.+.+. .+|++.+++.++..++..+..++ .||
T Consensus 82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQF---LGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc---cchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999998877643 57999999888877766555444 554
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.7e-13 Score=118.94 Aligned_cols=269 Identities=14% Similarity=0.089 Sum_probs=164.8
Q ss_pred CCcchHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHH
Q 010323 16 NGKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLI 95 (513)
Q Consensus 16 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i 95 (513)
+...++.+.....+-.++...||...... .. +-+++|.+..|++.+....+...++
T Consensus 29 ~~~f~~Fqr~yl~vY~La~~aDWLQGpY~----------Y~--------------LY~~yg~~~~qIa~Lf~~Gf~Ss~i 84 (354)
T PF05631_consen 29 NPAFRRFQRKYLLVYLLAMAADWLQGPYL----------YA--------------LYESYGFSEHQIAILFVAGFASSAI 84 (354)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcchh----------HH--------------HHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34445545555555556667777764321 11 1234688999999999999999999
Q ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccc-eeeccCCCCCc----c
Q 010323 96 ASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPL-YLSEMAPPRHR----G 170 (513)
Q Consensus 96 ~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~-~i~~~~~~~~r----~ 170 (513)
..++.|.++||+|||+.-+...++++++++ +-..++++.++++|++.|++....+.. --+ ++.|.-..+.+ +
T Consensus 85 ~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~--FEsW~V~Eh~~~g~~~~~L~ 161 (354)
T PF05631_consen 85 FGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSA--FESWMVHEHNKRGFPQEWLS 161 (354)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCChHHHH
Confidence 999999999999999999999999999886 456689999999999999999988876 554 44555322211 2
Q ss_pred chhhHHH-HHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcc-cCCChHHHHHhCCcHHHHHHHHHHH
Q 010323 171 AFNIGYE-LCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALF-LPETPNSIIQRSNDLQRAKQMLQRI 248 (513)
Q Consensus 171 ~~~~~~~-~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~ 248 (513)
...+... ...++-.+++.+++..+.+..+ .|-..+|....+..++..++... -+|.+.... +++ +.
T Consensus 162 ~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~-~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~-~~~---~~------- 229 (354)
T PF05631_consen 162 DTFSLATFFGNGVVAIGAGVVANVLADWFG-FGPVAPFDAAIVLLAVAAVLILKTWPENYGDTS-SSS---SL------- 229 (354)
T ss_pred HHHHHHHHHHhHHHHHHHhHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHHHHhcccccCCCcc-ccc---ch-------
Confidence 2222222 1223333444445444443322 24467888777766665554443 455431000 000 00
Q ss_pred hCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHH
Q 010323 249 RGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSA 328 (513)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 328 (513)
.++-+..++.+.+ .++.+.+......+....+..+..|.|.+-.+ + ....-+ ++.
T Consensus 230 -------------------~~~~~~a~~~i~~---d~ril~LG~~qslFE~smy~FVflWtPaL~~~-~-~~~P~G-lIF 284 (354)
T PF05631_consen 230 -------------------SGSFREAWRAILS---DPRILLLGLIQSLFEGSMYLFVFLWTPALDPD-D-EELPLG-LIF 284 (354)
T ss_pred -------------------HHHHHHHHHHHHc---CchhHHHHHHHHHHHHHHHHheeeeeceecCC-C-CCCCch-HHH
Confidence 0000011222222 24566667777777777777777788877511 1 112234 777
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 010323 329 VVTGGIGTLSTIISMILVDK 348 (513)
Q Consensus 329 ~~~~~~~~~~~~~~g~l~d~ 348 (513)
..+.+..++|+.+..++..+
T Consensus 285 ssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 285 SSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 77888888999888665544
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.2e-13 Score=128.71 Aligned_cols=178 Identities=15% Similarity=0.102 Sum_probs=131.9
Q ss_pred HHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHH
Q 010323 287 LVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQ 366 (513)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 366 (513)
.+....+..+.............|.+.++.|.+..+.+ .......++..++.++.|+++||+|||+.+..+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 96 (398)
T TIGR00895 18 AIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLG-FLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFT 96 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHH-HHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34444444444444455667778888899999988888 77788889999999999999999999999998888777776
Q ss_pred HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhH
Q 010323 367 VMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFL 446 (513)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~ 446 (513)
++.... ++.+...+...+.+++.+... +....+..|.+|++.|+++.++.+....+|..+++.+.+
T Consensus 97 ~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 162 (398)
T TIGR00895 97 LLCALA-------------TNVTQLLILRFLAGLGLGGLM-PNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG 162 (398)
T ss_pred HHHHHc-------------cchHHHHHHHHHHhcccccch-hhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHH
Confidence 665543 345555556666666655554 444566689999999999999999999999999999999
Q ss_pred HHHHhcchhhhHHHH-HHHHHHHHHHHhhcccCC
Q 010323 447 AMLCHFKAGIFFFFG-GWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 447 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 479 (513)
.+.+..++...+... .+..+...+.....|++.
T Consensus 163 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 163 WLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred HHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 999888765544444 455555555556666653
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-12 Score=126.13 Aligned_cols=381 Identities=15% Similarity=0.145 Sum_probs=215.5
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhh---h--hHHHHHHHHHHHHHHHHHhhhc----hhHHHHHH
Q 010323 68 DTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAF---G--RRASILVGGAAFLAGSALGGAA----LNIYMLIF 138 (513)
Q Consensus 68 ~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~---G--rr~~l~~~~~~~~~~~~~~~~~----~~~~~l~~ 138 (513)
.+.+++++|+++++.....+...+...+ -+++|.++|.+ | ||+-++++.++..++.+..+.. .+.....+
T Consensus 13 ~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~ 91 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVV 91 (433)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHH
Confidence 3456788899999999999988887755 68899999976 2 4555666777776655555543 34666667
Q ss_pred HHHHHHhhhhhhhhcccccceeeccCC--CCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHH
Q 010323 139 GRVLLGVGIGFANQASSVPLYLSEMAP--PRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALI 216 (513)
Q Consensus 139 ~r~l~Gi~~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~ 216 (513)
.-++..+|.+..... +-+++.|... ++.|+...+.......+|.+++..+++.+.+. .++|..|.+.+++..+
T Consensus 92 ~l~la~~g~a~~DV~--aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~---~~~~~~f~i~~~~~~l 166 (433)
T PF03092_consen 92 LLFLASFGYAFADVA--ADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS---FGPQGVFLISAALPLL 166 (433)
T ss_pred HHHHHHHHHHHHHHh--hhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc---CCCeEEehHHHHHHHH
Confidence 778888888888888 8888988874 33467778888888889999999998877654 4588888888776666
Q ss_pred HHHhhcc-cCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHH-HH
Q 010323 217 LTLGALF-LPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAIL-IP 294 (513)
Q Consensus 217 ~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 294 (513)
..+..++ .+|.++ +.+ ++... .... ..+..... .++.....++.++. +..+.... +.
T Consensus 167 ~~~~~~~~~~e~~~----~~~--~~~~~----~~~~-~~~~~~~~-------~~~~~~~l~~~~~~---~~i~~~~~~~~ 225 (433)
T PF03092_consen 167 MLIVALFLLEERKV----RPA--DEVFS----FGKE-EVPCLFGS-------FREQLSELWRALQQ---RAIWQPILFFI 225 (433)
T ss_pred HHHHHHHhhhhccc----ccc--chhhc----cccc-ccchhhHH-------HHHHHHHHHHHHhh---hHHHHHHHHHH
Confidence 5554444 444210 000 00000 0000 00000000 00011112222221 11111111 11
Q ss_pred HHhhhcc--hhh-hHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHH
Q 010323 295 FFLQVTG--INV-IGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGS 371 (513)
Q Consensus 295 ~~~~~~~--~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 371 (513)
++..... ... ..++........++++...+ ....+..++.++|..+..+...+..-|+++....++..+..+.-..
T Consensus 226 ~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~-~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~ 304 (433)
T PF03092_consen 226 FFFNLPPSISSASSFYFQTDALGGPHFSPSFYG-TLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLL 304 (433)
T ss_pred HHHHhccCCCCccEEEEEeccccccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEE
Confidence 1111111 111 11122111111226666666 5556677777777777777666667777766655544433332111
Q ss_pred HHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHh
Q 010323 372 IMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCH 451 (513)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 451 (513)
.. ...+..-+.++. +..+.-.++......+.+-|..... +|+.|+...|+.+++...+.++|..++..+...+.+.
T Consensus 305 lv-~~~n~~~Gi~d~--~f~lgd~~l~~~~~~i~~mP~lvl~-a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~ 380 (433)
T PF03092_consen 305 LV-TRWNLDLGIPDQ--WFALGDTILEEVIGMIAFMPSLVLA-ARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMEL 380 (433)
T ss_pred EE-EEEeeeeCcCCe--EEEEEhHHHHHHHHHHHHHHHHHHH-HHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 000000011112 3333333444444455555664444 7999999999999999999999999999998888876
Q ss_pred cch--------hhhHHHHHHHHHHHHHHHhhcccCCC
Q 010323 452 FKA--------GIFFFFGGWVVVMTTFVHFFLPETKN 480 (513)
Q Consensus 452 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (513)
.+. ....+.+.++.+..+....++|+.++
T Consensus 381 ~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~~ 417 (433)
T PF03092_consen 381 FGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQKR 417 (433)
T ss_pred cCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence 652 12333334444444555556665443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.8e-13 Score=121.39 Aligned_cols=183 Identities=16% Similarity=0.153 Sum_probs=153.1
Q ss_pred chhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHH
Q 010323 283 YRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQM 362 (513)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 362 (513)
++.+.+...++.+......--.++.-.|.+.++.++|..+.+ .+.+.+.+..-++.++.|.++||.+.|+.+..++++.
T Consensus 26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG-~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils 104 (448)
T COG2271 26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLG-ILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence 344556666666665555556677788999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHH
Q 010323 363 LAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIA 442 (513)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 442 (513)
+++.+++++. ++.+...++..+-+.+.+.+++|....+ ..-+|++.||+..++-|...++|+.+.|
T Consensus 105 ai~nil~Gfs-------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i-~~Wfsr~eRG~~~siWn~shNiGGal~~ 170 (448)
T COG2271 105 AIVNILFGFS-------------PSLFLFAVLWVLNGWFQGMGWPPCARTI-THWFSRKERGTWWSIWNTSHNIGGALAP 170 (448)
T ss_pred HHHHHHHhhh-------------hHHHHHHHHHHHHHHHhcCCCcHHHHHH-HHHcCccccCceEEEehhhhhcccchHH
Confidence 9999999886 5778888888999999999998886666 7999999999999999999999999999
Q ss_pred HHh--HHHHHhcchh-hhHHHHHHHHHHHHHHHhhcccCCC
Q 010323 443 QTF--LAMLCHFKAG-IFFFFGGWVVVMTTFVHFFLPETKN 480 (513)
Q Consensus 443 ~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (513)
++. +.+.++.++. .++.-++++.+.+++.++..+++++
T Consensus 171 ~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 171 LVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 999 8888877754 4555666666777777777766544
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.1e-12 Score=123.77 Aligned_cols=181 Identities=11% Similarity=0.127 Sum_probs=136.9
Q ss_pred hhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHH
Q 010323 284 RPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQML 363 (513)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 363 (513)
+++.+....+..+.............|.+.++.|.+..+.+ .......++..++.++.|+++||+|||+.+..+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~ 88 (405)
T TIGR00891 10 QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAA-SLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFS 88 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34455566666666666667777888888899999999888 88888889999999999999999999999998888877
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHH
Q 010323 364 AAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQ 443 (513)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 443 (513)
++.++..+. ++.+.......+.+.+.+.... ....++.|.+|+++|+.+.++.+....+|..+++.
T Consensus 89 ~~~~~~~~~-------------~~~~~l~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 154 (405)
T TIGR00891 89 AGTLACGFA-------------PGYITMFIARLVIGIGMGGEYG-SSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQ 154 (405)
T ss_pred HHHHHHHHh-------------ccHHHHHHHHHHHHhhhhhhhH-HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 777766553 4455566666777766665543 33555579999999999999999999999999999
Q ss_pred HhHHHHHhcc--hhhhHHHHHHHHHHHHHHHhhcccCC
Q 010323 444 TFLAMLCHFK--AGIFFFFGGWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 444 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (513)
+.+.+.+..+ +...+...++..+..++.....||++
T Consensus 155 l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 155 VYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAE 192 (405)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 9998887765 55555555444444444445556643
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.3e-12 Score=115.94 Aligned_cols=345 Identities=12% Similarity=0.102 Sum_probs=219.8
Q ss_pred cccchhHHH-HHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhc
Q 010323 75 CKFDSQLLT-SFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQA 153 (513)
Q Consensus 75 ~~~s~~~~~-~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~ 153 (513)
.|+|..|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+..+.++...+-+..++-|++.+.. .+
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~e-va 113 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAE-VA 113 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHH-HH
Confidence 466777765 4556666677888999999999999999999999999999999999999999999999999998864 44
Q ss_pred ccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCChHHHHH
Q 010323 154 SSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQ 233 (513)
Q Consensus 154 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~ 233 (513)
.++|+-...++++-.++.+...++..+|..++.++|-.+..... .+.+....+......+.++..+++|..++...-
T Consensus 114 --y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~-~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f 190 (412)
T PF01770_consen 114 --YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGG-VSYFQLNYISLASVSLALLIALFLPMPKRSLFF 190 (412)
T ss_pred --HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHcCCCCcccce
Confidence 66788888888888999999999999999999888887766433 457777666666555566666778776543332
Q ss_pred hCCcHHHHHHHHHHHhCCCchHHHHHH--HHH-HHHhhhhcCCcchhh---cccCchhHHHHHHHHHHHhhhcchhhhHh
Q 010323 234 RSNDLQRAKQMLQRIRGTDDVEAEFDD--LIK-ASSIAKTVNHPFKKI---IQRKYRPQLVMAILIPFFLQVTGINVIGF 307 (513)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (513)
++++.++.. .+....++..+.+.+. ..+ ........+..++.+ ++...+++.++...+...+..+++..+..
T Consensus 191 ~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~n 268 (412)
T PF01770_consen 191 HRKPPAEQD--ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVIN 268 (412)
T ss_pred eccCccccc--cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHH
Confidence 222111100 0000000000000000 000 000000001111111 22334556677777778888888888888
Q ss_pred cHHHHHHhc---CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHH--HHHHHHHHHHHhhcCCCCC
Q 010323 308 YAPVLFRTI---KLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQML--AAQVMIGSIMENQLGDQGG 382 (513)
Q Consensus 308 ~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 382 (513)
|...+.++. +......+ ..-....+.+.++.+..|++..++.+..-+.++..... ..++++...
T Consensus 269 YvQ~LW~~v~~~~~~~vYNG-~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t---------- 337 (412)
T PF01770_consen 269 YVQSLWDTVPPSDNESVYNG-AVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFT---------- 337 (412)
T ss_pred HHHHHHHhcCCCCCCcccch-HHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 888888876 22233334 56666667777888888888555555444443333332 223333222
Q ss_pred CCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHH
Q 010323 383 FSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFL 440 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 440 (513)
++.|......+++...+.+........+ +.....+.-|...|+++++..+...+
T Consensus 338 ---~~Iwv~Y~~yIif~~~y~fliTiA~~qI-A~~l~~e~yaLVFGiNtf~Al~LQti 391 (412)
T PF01770_consen 338 ---GNIWVCYAGYIIFRSLYMFLITIASFQI-AKNLSEERYALVFGINTFVALVLQTI 391 (412)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccccceeeeeeeHHHHHHHHHHh
Confidence 6788888888888877766554443333 44445566677788777766555443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-12 Score=125.58 Aligned_cols=178 Identities=14% Similarity=0.113 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHH
Q 010323 286 QLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAA 365 (513)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 365 (513)
+.+...++..+...........+.|.+.++.|.+..+.+ ...+...++..++.++.|++.||+|||+.+.++..+..++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~ 101 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIG-LLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGII 101 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHH
Confidence 344444444444444445667788999999999988888 8888889999999999999999999999999988888888
Q ss_pred HHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHh
Q 010323 366 QVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTF 445 (513)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 445 (513)
.++.... ++.+.......+.+++.+..+.+. ..++.|.+|+++|+++.|+.+....+|..+++.+.
T Consensus 102 ~~~~~~~-------------~~~~~l~~~~~l~g~~~g~~~~~~-~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~ 167 (434)
T PRK11663 102 NILFGFS-------------SSLWAFALLWVLNAFFQGWGWPVC-AKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVV 167 (434)
T ss_pred HHHHHHH-------------hHHHHHHHHHHHHHHHHHccchHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766554 344555555555566666554433 45558999999999999999999999999999999
Q ss_pred HHHHHhcchhhhHHHHH-HHHHHHHHHHhhcccC
Q 010323 446 LAMLCHFKAGIFFFFGG-WVVVMTTFVHFFLPET 478 (513)
Q Consensus 446 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 478 (513)
+.+.+..++...+...+ +..+..++..+.++|+
T Consensus 168 ~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 168 GAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99998888765554433 3333444444455554
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.6e-13 Score=130.05 Aligned_cols=149 Identities=13% Similarity=0.173 Sum_probs=125.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhch----hHHHHHHHHHHHHhhhhhhhhc
Q 010323 78 DSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAAL----NIYMLIFGRVLLGVGIGFANQA 153 (513)
Q Consensus 78 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~Gi~~~~~~~~ 153 (513)
+.++.+...++..++..++.++.|+++||+|||+++..+.++.+++..+..... +++.+++.+++.|++.+...+.
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999999999999999999999999988876666532 3466778899999999988887
Q ss_pred ccccceeeccCCCCCccchhhHHH-HHHHHHHHHHHHHHhhhcccCCc---cchHHHHHhhHHHHHHHHHhh-cccCCCh
Q 010323 154 SSVPLYLSEMAPPRHRGAFNIGYE-LCTAIGILAASLINYGTQKIKGG---WGWRISLAMAAAPALILTLGA-LFLPETP 228 (513)
Q Consensus 154 ~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~~~~~~~~---~~wr~~f~~~~~~~~~~~~~~-~~~~e~p 228 (513)
...++.|++|+++|+++.++.+ ...++|..+||.+++.+.+..+. +||+..|.+.+++.++..++. ++++|+.
T Consensus 329 --~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 329 --GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred --HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 7889999999999999999997 67889999999999988776443 579999998888777765554 4477763
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=126.73 Aligned_cols=149 Identities=17% Similarity=0.150 Sum_probs=122.7
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFAN 151 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~ 151 (513)
++++|++..+.+++.+...++..++.+++|+++||+|||+.+..+.....+......++++.+.+++.|++.+++.+...
T Consensus 244 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~ 323 (393)
T PRK15011 244 INELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILG 323 (393)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34457788999998888888888899999999999999998887776666655555567788888889999988888777
Q ss_pred hcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCC
Q 010323 152 QASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPE 226 (513)
Q Consensus 152 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 226 (513)
+. ...+..|.+| ++|+++.++++....+|..+++.+++.+.+. .+|+..|++.+++.++..+..++.||
T Consensus 324 ~~--~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 324 GI--GMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEI---WNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HH--HHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 66 6677889888 4699999999999999999999999887664 57999999888888877777777665
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.9e-12 Score=122.11 Aligned_cols=175 Identities=13% Similarity=0.143 Sum_probs=120.9
Q ss_pred HHHHHHHHHhhhcchhhhHhcHHHHH-HhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHH
Q 010323 288 VMAILIPFFLQVTGINVIGFYAPVLF-RTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQ 366 (513)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 366 (513)
++.+.+..++...+......+.|.++ ++.|.+..+.+ ...+...+..+++.++.|+++||+|||+.+..+.....++.
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g-~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~ 87 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIG-YAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGF 87 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHH
Confidence 33444445555556666666666666 56899999988 88888888899999999999999999999988887777776
Q ss_pred HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhH
Q 010323 367 VMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFL 446 (513)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~ 446 (513)
+.+.+. ++.+..+....+.+.+.+. ..+....+..|..|++.|+++.|+.+...++|..++|.+.+
T Consensus 88 ~~~~~~-------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~ 153 (395)
T PRK10054 88 IAIPLV-------------NNVTLVVLFFALINCAYSV-FSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGT 153 (395)
T ss_pred HHHHHH-------------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665543 3344444444444444332 23444566679999999999999999999999999999999
Q ss_pred HHHHhcchhhhHHHHHHHHHHH-HHHHhhcccC
Q 010323 447 AMLCHFKAGIFFFFGGWVVVMT-TFVHFFLPET 478 (513)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 478 (513)
.+.+ .++...+...+++.+.. ++..+.+|+.
T Consensus 154 ~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 154 LLVM-QSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8875 45444333333333333 3344445544
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.7e-12 Score=126.57 Aligned_cols=162 Identities=19% Similarity=0.128 Sum_probs=125.6
Q ss_pred hhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCC
Q 010323 303 NVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGG 382 (513)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (513)
..+....|.+.++.+.+..+.+ .+.+...++.+++.++.|+++||+|||+.++++.++..++.++..+.
T Consensus 184 ~~is~ilp~i~~~~gls~~~~g-~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa---------- 252 (742)
T TIGR01299 184 FVVGFVLPSAEKDLCIPDSGKG-MLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV---------- 252 (742)
T ss_pred HHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH----------
Confidence 4456667888888999988887 77888889999999999999999999999999888877777666543
Q ss_pred CCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc---------
Q 010323 383 FSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK--------- 453 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------- 453 (513)
++.+.+++..++.+++.+... +....++.|.+|++.|+...++.+....+|.++++.+...+....+
T Consensus 253 ---~s~~~llv~R~l~G~g~g~~~-p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~ 328 (742)
T TIGR01299 253 ---QGYGFFLFCRLLSGFGIGGAI-PIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAY 328 (742)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccccc
Confidence 345666667777777766654 5556777999999999999999999999999998887766665432
Q ss_pred ----hhhhHHHHHHHHHHHHHHHhhcccCC
Q 010323 454 ----AGIFFFFGGWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 454 ----~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (513)
|..++.+.++..+..++..+++||.+
T Consensus 329 ~~~gWR~l~~i~~lp~ll~ll~~~~lPESP 358 (742)
T TIGR01299 329 QFHSWRVFVIVCAFPCVFAIGALTFMPESP 358 (742)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 44555555556666666677788873
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.7e-12 Score=121.47 Aligned_cols=182 Identities=15% Similarity=0.065 Sum_probs=137.4
Q ss_pred hhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHH
Q 010323 284 RPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQML 363 (513)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 363 (513)
+++.+....+.+++.........+..|.+.++++.+..+.+ ...+...++..++.+..|++.||+|||+.+..+.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~ 84 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFG-LAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWG 84 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHH-HHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHH
Confidence 34455556666666666666677778877889999999888 88888889999999999999999999999999888888
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHH
Q 010323 364 AAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQ 443 (513)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 443 (513)
++.++..+. ++.+.....-.+.+++.+... +....++.|.+|+++|+++.|+.+....+|..+++.
T Consensus 85 ~~~~~~~~~-------------~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~ 150 (412)
T TIGR02332 85 IASTATMFA-------------TGPESLYLLRILVGIAEAGFL-PGILLYLTFWFPAYFRARANALFMIAMPVTMALGLI 150 (412)
T ss_pred HHHHHHHHh-------------cCHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777654 445566666667777766554 444556689999999999999999999999999999
Q ss_pred HhHHHHHh------cchhhhHHH-HHHHHHHHHHHHhhcccCCC
Q 010323 444 TFLAMLCH------FKAGIFFFF-GGWVVVMTTFVHFFLPETKN 480 (513)
Q Consensus 444 ~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 480 (513)
+.+.+.+. .++...+.. ++..++...+.++++||+++
T Consensus 151 ~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 151 LSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 99888752 455544444 44444455555666777653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-11 Score=119.03 Aligned_cols=175 Identities=19% Similarity=0.109 Sum_probs=128.8
Q ss_pred HHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHH
Q 010323 291 ILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIG 370 (513)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 370 (513)
..+................|.+.++.|.++.+.+ .......++..++.++.|++.||+|||+.+..+..+..++.+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 88 (385)
T TIGR00710 10 LGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQ-MTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA 88 (385)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 3333333444455555667888899999998888 888888999999999999999999999999998888877777665
Q ss_pred HHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHH
Q 010323 371 SIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLC 450 (513)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 450 (513)
.. ++.+...+..++.+.+.+.... ....+..|.+|+++|+++.++.+....++..+++.+.+.+.+
T Consensus 89 ~~-------------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 154 (385)
T TIGR00710 89 LS-------------NNIETLLVLRFVQAFGASAGSV-ISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV 154 (385)
T ss_pred HH-------------ccHHHHHHHHHHHHcchhHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 3455555556666666554443 335566899999999999999999999999999999999988
Q ss_pred hcchhhhHH-HHHHHHHHHHHHHhhcccCCC
Q 010323 451 HFKAGIFFF-FGGWVVVMTTFVHFFLPETKN 480 (513)
Q Consensus 451 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 480 (513)
..++...+. .+.+..+..++..+..||+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 155 WLSWHAIFAFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 887665443 344444444444455665543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.7e-12 Score=121.80 Aligned_cols=162 Identities=18% Similarity=0.111 Sum_probs=125.4
Q ss_pred hhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCC
Q 010323 303 NVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGG 382 (513)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (513)
.......|.+.++.|.+..+.+ .......++..++.++.|+++||+|||+.+..+..+..++..+..+.
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---------- 79 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYG-YVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA---------- 79 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHH-HHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH----------
Confidence 4455667778888999998888 88888999999999999999999999999998888887777776654
Q ss_pred CCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHH
Q 010323 383 FSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGG 462 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (513)
.+.+...+..++.+.+.+... +....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..++...+...+
T Consensus 80 ---~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (399)
T TIGR00893 80 ---GAYVSLYILRVLLGAAEAPFF-PGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEG 155 (399)
T ss_pred ---cCHHHHHHHHHHHHHHHHhhh-hHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 456666677777777766554 4445666899999999999999999999999999999999888888665544443
Q ss_pred -HHHHHHHHHHhhcccCC
Q 010323 463 -WVVVMTTFVHFFLPETK 479 (513)
Q Consensus 463 -~~~~~~~~~~~~~~~~~ 479 (513)
...+..++..+..++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 156 VLGIIWGVLWLKFIPDPP 173 (399)
T ss_pred HHHHHHHHHhhheecCCC
Confidence 33344444444455543
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.6e-12 Score=124.47 Aligned_cols=148 Identities=14% Similarity=0.163 Sum_probs=124.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhccc
Q 010323 76 KFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASS 155 (513)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~ 155 (513)
+.+..+.|++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+.
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~-- 335 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG-- 335 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH--
Confidence 346678899999999999999999999999999999999999999999889999999999999999999998887777
Q ss_pred ccceeeccCCCCCccchhhH-HHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhc-ccCCCh
Q 010323 156 VPLYLSEMAPPRHRGAFNIG-YELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGAL-FLPETP 228 (513)
Q Consensus 156 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p 228 (513)
...++.|.+|++.|+...+. ++....+|.++++.+.+.+.+. .|||..|.+.+++.++..+..+ .++++|
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~---~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS---IGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh---hCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 77889999999999887655 6677889999999998887764 4799999988887766554443 455443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.8e-11 Score=115.44 Aligned_cols=160 Identities=13% Similarity=0.081 Sum_probs=120.2
Q ss_pred hhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCC
Q 010323 304 VIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGF 383 (513)
Q Consensus 304 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (513)
......|.+.+++|.+..+.+ .......++..++.+..|++.||+|||+.+..+..+..++.+...+.
T Consensus 27 ~~~~~~~~l~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------- 94 (390)
T PRK03545 27 VPVGLLSDIAQSFHMQTAQVG-LMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA----------- 94 (390)
T ss_pred HHHcchHHHHhHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 344457888899999999988 77778888888999999999999999999999988888887776654
Q ss_pred CcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHH-HH
Q 010323 384 SKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFF-GG 462 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 462 (513)
++.+...+..++.+.+.+... +....+..|.+|+++|+++.|+......++..++|.+.+.+.+..++...+.. ++
T Consensus 95 --~~~~~l~~~r~~~G~~~~~~~-~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~ 171 (390)
T PRK03545 95 --WNFTVLLISRIGIAFAHAIFW-SITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGG 171 (390)
T ss_pred --ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHH
Confidence 455555555555555554333 34345557999999999999999999999999999999999888886654444 44
Q ss_pred HHHHHHHHHHhhcccC
Q 010323 463 WVVVMTTFVHFFLPET 478 (513)
Q Consensus 463 ~~~~~~~~~~~~~~~~ 478 (513)
+..+.........|+.
T Consensus 172 ~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 172 GALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 4444444444445554
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.2e-11 Score=118.30 Aligned_cols=164 Identities=13% Similarity=0.110 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHH
Q 010323 286 QLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAA 365 (513)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 365 (513)
+.+....+..+.............|.+.++.|.++.+.+ .......++..++.++.|+++||+|||+.+..+.....++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~-~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~ 96 (426)
T PRK12307 18 NALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGA-FLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVG 96 (426)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 334445555555555556666777787888999998888 8888888999999999999999999999999999988888
Q ss_pred HHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHh
Q 010323 366 QVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTF 445 (513)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 445 (513)
.+...+. ++.+...+...+.+.+.+.... ....+..|.+|++.|+++.++......+|..+++.+.
T Consensus 97 ~~~~~~~-------------~~~~~l~~~r~l~G~g~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~ 162 (426)
T PRK12307 97 TGLSGLA-------------SGVIMLTLSRFIVGMGMAGEYA-CASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFM 162 (426)
T ss_pred HHHHHHH-------------hHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHH
Confidence 8776654 4556666666677766655443 3355558999999999999999999999999999998
Q ss_pred HHHHHhcchhhhHHHHHHH
Q 010323 446 LAMLCHFKAGIFFFFGGWV 464 (513)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~ 464 (513)
+.+.+..++...+.+..+.
T Consensus 163 ~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 163 PSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred HHHcccCCHHHHHHHHHHH
Confidence 8888877776655544433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.3e-12 Score=121.22 Aligned_cols=164 Identities=13% Similarity=0.098 Sum_probs=122.8
Q ss_pred chhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCC
Q 010323 301 GINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQ 380 (513)
Q Consensus 301 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (513)
....+....|.+.+++|.+..+.+ ...+...++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 10 ~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------- 80 (379)
T TIGR00881 10 VRKNFALAMPYLVEEIGLSKTDLG-LLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-------- 80 (379)
T ss_pred hHHhhhhhhHHHHHHhCCCHhHHH-HHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh--------
Confidence 345566677888888999998888 88888999999999999999999999999999988888887777654
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHH-HhHHHHHhcchhhhH-
Q 010323 381 GGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQ-TFLAMLCHFKAGIFF- 458 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~- 458 (513)
++.+...+...+.+++.+... +....++.|.+|+++|+.+.++.+....+|..+++. +.+.+.+..++...+
T Consensus 81 -----~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (379)
T TIGR00881 81 -----TSLWVMAALWALNGIFQGMGW-PPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI 154 (379)
T ss_pred -----hhHHHHHHHHHHHHhhccccC-CchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence 355566666666666665554 444566689999999999999999999999999995 555555555655433
Q ss_pred HHHHHHHHHHHHHHhhcccCC
Q 010323 459 FFGGWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~ 479 (513)
..+.+..+..++..+..++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 155 VPGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred HHHHHHHHHHHHHheeeCCCc
Confidence 344444444555555555543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.9e-12 Score=118.46 Aligned_cols=145 Identities=26% Similarity=0.320 Sum_probs=132.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHH-HHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhc
Q 010323 75 CKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRA-SILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQA 153 (513)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~ 153 (513)
+|.++.+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.+...+.++.+.+.+..++.|++.+...+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 285 (352)
T cd06174 206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPA 285 (352)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchh
Confidence 4778999999999999999999999999999999999 999999999999999999999999999999999999999998
Q ss_pred ccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhccc
Q 010323 154 SSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFL 224 (513)
Q Consensus 154 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 224 (513)
...++.|..|+++|++.+++......+|..+++.+.+.+.+. .+|+..+++.+++.++..+..+++
T Consensus 286 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~---~~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 286 --LLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT---GGYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred --HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCcchHHHHHHHHHHHHHHHheec
Confidence 899999999999999999999999999999999998887653 579999999999888777665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.2e-12 Score=121.14 Aligned_cols=140 Identities=15% Similarity=0.039 Sum_probs=118.9
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhH--HHHHHHHHHHHhhhhhhh
Q 010323 74 YCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNI--YMLIFGRVLLGVGIGFAN 151 (513)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~Gi~~~~~~ 151 (513)
++|.+..+.+++.+.+.++..++.++.|++.||+|||+.+.++..+..++.++..+.++. ..++...++.|++.+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 313 (377)
T TIGR00890 234 SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTI 313 (377)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccch
Confidence 346688889999999999999999999999999999999999999988888877776643 335566788888888777
Q ss_pred hcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHH
Q 010323 152 QASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILT 218 (513)
Q Consensus 152 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 218 (513)
+. .+.++.|.+|+++|+++.++......+|..++|.+.+.+.+. .||++.|.+.+++.++..
T Consensus 314 ~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 314 SL--FPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE---IGFEYTFIVTGAFALTSL 375 (377)
T ss_pred hc--cHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh---hchhhHHHHHHHHHHHhc
Confidence 76 778899999999999999999999999999999998877654 579999998887766543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-11 Score=116.76 Aligned_cols=165 Identities=14% Similarity=0.077 Sum_probs=123.4
Q ss_pred hhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhh
Q 010323 297 LQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQ 376 (513)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (513)
....+........|.+..+.+.+..+.+ .......++..++.++.|+++||+|||+.+..+..+..++..++......
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~- 87 (365)
T TIGR00900 10 ISLIGTAITQVALPLYVLAGTGSASVLS-LAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL- 87 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 3334445566677888888888888888 88888889999999999999999999999998888777776666554211
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhh
Q 010323 377 LGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGI 456 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (513)
+..+.+...+...+.+.+.+... +....+..|.+|+++|+++.|..+....+|..++|.+.+.+.+..++..
T Consensus 88 -------~~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~ 159 (365)
T TIGR00900 88 -------GGLNIWQVYVLAGILAIAQAFFT-PAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKW 159 (365)
T ss_pred -------CCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 11255666666666666665544 4445666899999999999999999999999999999999998888765
Q ss_pred hHHHHHHHHHHHHHH
Q 010323 457 FFFFGGWVVVMTTFV 471 (513)
Q Consensus 457 ~~~~~~~~~~~~~~~ 471 (513)
.+...++..+...+.
T Consensus 160 ~~~~~~~~~~~~~~~ 174 (365)
T TIGR00900 160 AIWVDAVGFAISALL 174 (365)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555444444444333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-10 Score=112.53 Aligned_cols=160 Identities=10% Similarity=0.049 Sum_probs=122.1
Q ss_pred hhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCC
Q 010323 304 VIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGF 383 (513)
Q Consensus 304 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (513)
......|.+.++.|.++.+.+ .......+...++.++.|++.||+|||+.+..+..+..++.++....
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~----------- 105 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAG-QSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA----------- 105 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 334456778889999999888 77778888999999999999999999999999999988877766553
Q ss_pred CcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHH
Q 010323 384 SKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGW 463 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (513)
++.+..++...+.+++.+... +....++.|.+|+++|+.+.++......++..++|.+.+.+.+..++...+....+
T Consensus 106 --~~~~~l~~~r~l~G~~~g~~~-~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~ 182 (394)
T PRK10213 106 --NSFSLLLIGRACLGLALGGFW-AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAV 182 (394)
T ss_pred --ChHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 456666676677777766543 44466668999999999999999999999999999999999988887654444333
Q ss_pred HHH-HHHHHHhhcccC
Q 010323 464 VVV-MTTFVHFFLPET 478 (513)
Q Consensus 464 ~~~-~~~~~~~~~~~~ 478 (513)
..+ +.+......||+
T Consensus 183 l~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 183 MGVLCIFWIIKSLPSL 198 (394)
T ss_pred HHHHHHHHHHHHCCCC
Confidence 333 223333345554
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.9e-11 Score=114.97 Aligned_cols=179 Identities=15% Similarity=0.170 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHH
Q 010323 286 QLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAA 365 (513)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 365 (513)
|.+............+........|.+.++.|.+..+.+ .......++..++.++.|+++||+|||+.+..+.....++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~ 81 (392)
T PRK10473 3 RFLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLH-IAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIA 81 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHH
Confidence 344445555555555556666778888899999988887 7788888899999999999999999999999888887777
Q ss_pred HHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHh
Q 010323 366 QVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTF 445 (513)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 445 (513)
...+... ++.+.......+.+.+.+... +....+..|.+|+++|+++.+..+....++..++|.+.
T Consensus 82 ~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~ 147 (392)
T PRK10473 82 SLLCSLA-------------ETSSLFLAGRFLQGIGAGCCY-VVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLG 147 (392)
T ss_pred HHHHHHh-------------CcHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666543 334444445555555544433 33355668999999999999999999999999999998
Q ss_pred HHHHHhcchhh-hHHHHHHHHHHHHHHHhhcccCC
Q 010323 446 LAMLCHFKAGI-FFFFGGWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 446 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 479 (513)
+.+.+..++.. +++.+.+..+..++..+..||++
T Consensus 148 ~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 148 HLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 88877777654 44444455555555556666654
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=119.95 Aligned_cols=142 Identities=18% Similarity=0.140 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhccccccee
Q 010323 81 LLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYL 160 (513)
Q Consensus 81 ~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i 160 (513)
+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+. ....+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~--~~~~~ 327 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPA--LGVEA 327 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHH--HHHHH
Confidence 3456677888889999999999999999999999999888888888888888888888999999999988877 77777
Q ss_pred eccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCC
Q 010323 161 SEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPET 227 (513)
Q Consensus 161 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 227 (513)
.|..|+++|+++.+++.....+|..+++.+.+.+.+. .||+..|++.++..++..+..++++++
T Consensus 328 ~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 328 VKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW---FGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8999999999999999999999999988887776654 579999999888777766665555443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.8e-11 Score=118.93 Aligned_cols=179 Identities=13% Similarity=0.143 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHH
Q 010323 285 PQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLA 364 (513)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 364 (513)
++.+....+..+.............|.+.+++|.+..+.+ .......++..++.++.|++.||+|||+.+..+..+..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 97 (496)
T PRK03893 19 WKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAA-SLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSV 97 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3445555555555555566667778888889999998888 777778889999999999999999999999988888887
Q ss_pred HHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHH
Q 010323 365 AQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQT 444 (513)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~ 444 (513)
+.+...+. ++.+...+...+.+++.+...... ..++.|.+|++.|+.+.++.+....+|..+++.+
T Consensus 98 ~~~~~~~~-------------~~~~~l~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 163 (496)
T PRK03893 98 GTLACGFA-------------PGYWTLFIARLVIGMGMAGEYGSS-ATYVIESWPKHLRNKASGFLISGFSIGAVVAAQV 163 (496)
T ss_pred HHHHHHHH-------------hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766654 345555666666666655444333 4555799999999999999999999999999999
Q ss_pred hHHHHHhcchhhhHHHHHHHHHHHHHHHhhcccC
Q 010323 445 FLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPET 478 (513)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (513)
.+.+.+..++...+....+..+..++.....|+.
T Consensus 164 ~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~ 197 (496)
T PRK03893 164 YSLVVPVWGWRALFFIGILPIIFALWLRKNLPEA 197 (496)
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999888887765555444444333333344443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.4e-11 Score=114.16 Aligned_cols=174 Identities=11% Similarity=0.154 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHhhhcchhhhHhcHHHHHH-hcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHhHHHHH
Q 010323 286 QLVMAILIPFFLQVTGINVIGFYAPVLFR-TIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKL-GRKVLFLVGGIQML 363 (513)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~ 363 (513)
+.++..+.........++.+..++|.++. +.|++..++. ...........++.+++|+++||+ |||+.+.++.++..
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~-~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~ 87 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAY-ELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMA 87 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHH
Confidence 33444444555555667778888888875 4799988888 777788888899999999999999 99999999998888
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChh--hhhhHhHHHHHHHHHHHHHH
Q 010323 364 AAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLE--IRSAGQSINVAVGFLFTFLI 441 (513)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~~~~~~ 441 (513)
++.+++... ............+...+.+... +....+.+|.+|++ .|+++.++.+...++|+.++
T Consensus 88 lg~lll~~~------------~~~~~~~~l~l~li~iG~G~~~-~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~ia 154 (493)
T PRK15462 88 IGHVVLGAS------------EIHPSFLYLSLAIIVCGYGLFK-SNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIA 154 (493)
T ss_pred HHHHHHHHh------------hcchhHHHHHHHHHHHhccccc-ccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHH
Confidence 887655431 0111222222333334444332 33355668999976 79999999999999999999
Q ss_pred HHHhHHHHHhcchhhhHHHHHHHHHHHHHHHh
Q 010323 442 AQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHF 473 (513)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (513)
|.+.+++.++.++...+..+++..+.+++.++
T Consensus 155 p~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~ 186 (493)
T PRK15462 155 PIACGYAQEEYSWAMGFGLAAVGMIAGLVIFL 186 (493)
T ss_pred HHHHHHHHhhhChHHHHHHHHHHHHHHHHHHH
Confidence 99999999888876655555544444444443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.4e-11 Score=116.78 Aligned_cols=175 Identities=12% Similarity=0.100 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHHhhhcchhhhHhcHHHHHHh---cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHhHH
Q 010323 285 PQLVMAILIPFFLQVTGINVIGFYAPVLFRT---IKLSESTSLLMSAVVTGGIGTLSTIISMILVDK-LGRKVLFLVGGI 360 (513)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~ 360 (513)
++.++.+.+..++...+++....++|.|+++ .|++..+++ .......+...++.+++|+++|| +|||+.+.++..
T Consensus 9 p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag-~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~ 87 (475)
T TIGR00924 9 PKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAF-IIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGI 87 (475)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHH
Confidence 3445555566666667777788888888765 788988888 88888899999999999999999 899999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChh---hhhhHhHHHHHHHHHH
Q 010323 361 QMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLE---IRSAGQSINVAVGFLF 437 (513)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~~ 437 (513)
+..++.+++.+. ++.+.......+.+.+.+... +....+.++.+|++ .|+++.++.+...++|
T Consensus 88 ~~~~g~~~~~~~-------------~~~~~~~~~~~l~g~g~g~~~-~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG 153 (475)
T TIGR00924 88 VLMLGHFMLAMS-------------IYPDLIFYGLGTIAVGSGLFK-ANPSSMVGKLYERGDMPRRDGGFTLFYMSINIG 153 (475)
T ss_pred HHHHHHHHHHhc-------------ccHhHHHHHHHHHHhcccccc-CCHHHHHHHhcCCCCcccccceehhHHHHHHHH
Confidence 888888776653 233344444555555555443 34455557888765 4888999999999999
Q ss_pred HHHHHHHhHHHHHhcchhhhHHHHHHHHHHHHHHHhh
Q 010323 438 TFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFF 474 (513)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (513)
..++|.+.+.+.++.++...+...++..+.+.+.++.
T Consensus 154 ~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~ 190 (475)
T TIGR00924 154 SFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFA 190 (475)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888766555544444444444443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=112.92 Aligned_cols=165 Identities=11% Similarity=0.023 Sum_probs=122.8
Q ss_pred hhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHH
Q 010323 284 RPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQML 363 (513)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 363 (513)
+++..+...+.++.............|.+.++++.+..+.+ .......++..++.++.|++.||+|||+.+..+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g-~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~ 83 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMS-NTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34455555555555555556677778888899999998888 77888889999999999999999999999988888777
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHH
Q 010323 364 AAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQ 443 (513)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 443 (513)
++..+..+. ++.+...+...+.+.+.+...+.. ..++.|.+|++.|+.+.+..+....+++.++|.
T Consensus 84 i~~~l~~~~-------------~~~~~~~~~~~l~G~~~g~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 149 (394)
T PRK03699 84 LAVAGLMFS-------------HSLALFSIAMFVLGVVSGITMSIG-TFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPI 149 (394)
T ss_pred HHHHHHHHc-------------chHHHHHHHHHHHHHhhHhhccch-hHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 777666543 345555566666666666554333 455579999999999999988888889999999
Q ss_pred HhHHHHHh-cchhhhHHHHHH
Q 010323 444 TFLAMLCH-FKAGIFFFFGGW 463 (513)
Q Consensus 444 ~~~~~~~~-~~~~~~~~~~~~ 463 (513)
+.+.+.+. .++...+...++
T Consensus 150 ~~~~l~~~~~gw~~~f~~~~~ 170 (394)
T PRK03699 150 IAAYLLARSIEWYWVYACIGL 170 (394)
T ss_pred HHHHHHhccccHHHHHHHHHH
Confidence 98887754 466554444333
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-10 Score=107.10 Aligned_cols=175 Identities=14% Similarity=0.075 Sum_probs=148.8
Q ss_pred HHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHH
Q 010323 287 LVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQ 366 (513)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 366 (513)
.++.+.+..|......+...-.+|.+-++++.+..+++ ...+.+..+..++.++...+.||+.||++++....+..++.
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG-~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n 92 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAG-QLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSN 92 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 34445555566666677778889999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhH
Q 010323 367 VMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFL 446 (513)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~ 446 (513)
++..+. ++.+..++.-.+.+...+..++ +...+..++.|+++|+++.++......+...++.++..
T Consensus 93 ~l~alA-------------p~f~~Ll~aR~~~g~a~G~f~~-i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt 158 (394)
T COG2814 93 LLSALA-------------PSFAVLLLARALAGLAHGVFWS-IAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGT 158 (394)
T ss_pred HHHHHh-------------ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHH
Confidence 988876 6788888888888888887764 44666789999999999999999999999999999999
Q ss_pred HHHHhcchh-hhHHHHHHHHHHHHHHHhhcc
Q 010323 447 AMLCHFKAG-IFFFFGGWVVVMTTFVHFFLP 476 (513)
Q Consensus 447 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 476 (513)
++-+..||. .|+..+++..+..+..+..+|
T Consensus 159 ~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 159 FLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999976 466666666677777777888
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.6e-11 Score=112.88 Aligned_cols=175 Identities=11% Similarity=-0.007 Sum_probs=129.5
Q ss_pred HHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHH
Q 010323 290 AILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMI 369 (513)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 369 (513)
...+..+.............|.+.++.|.+..+.+ ...+...++..++.++.|++.||+|||+.+..+..+..++.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~ 85 (382)
T PRK10091 7 SLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAG-HMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMF 85 (382)
T ss_pred HHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHh-HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence 33344444444445666678888899999988888 88888999999999999999999999999999998888887776
Q ss_pred HHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHH
Q 010323 370 GSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAML 449 (513)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 449 (513)
... ++.+...+...+.+.+.+... +.......|.+|+++|+.+.+.......++..+++.+.+.+.
T Consensus 86 ~~~-------------~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 151 (382)
T PRK10091 86 TLS-------------SSYLMLAIGRLVSGFPHGAFF-GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS 151 (382)
T ss_pred HHh-------------CcHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence 654 456666666666666655443 333445578899999999999999889999999999999888
Q ss_pred HhcchhhhHHHHH-HHHHHHHHHHhhcccCC
Q 010323 450 CHFKAGIFFFFGG-WVVVMTTFVHFFLPETK 479 (513)
Q Consensus 450 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 479 (513)
+..++...+...+ +..+..+......||.+
T Consensus 152 ~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 152 QEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 8877665444433 33333344445566643
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-11 Score=117.28 Aligned_cols=148 Identities=17% Similarity=0.196 Sum_probs=122.2
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhh
Q 010323 73 NYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQ 152 (513)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~ 152 (513)
+++|.++.+.+++.+.......++.++.|++.||+|||+++.++.++..+......+.++.+.+.+.+++.|++.+...+
T Consensus 228 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 307 (375)
T TIGR00899 228 HELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAG 307 (375)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888899988888777888899999999999999999888777766666666678888888899999999888887
Q ss_pred cccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCC
Q 010323 153 ASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPE 226 (513)
Q Consensus 153 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 226 (513)
. ...++.|..|+ +|+++.+++.....+|..++|.+++.+.+. .||+..|++.++..++..+...+++|
T Consensus 308 ~--~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 308 I--GMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAER---WSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred H--HHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHheecC
Confidence 7 77888898875 567999999999999999999998877654 47999999988887777766665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-10 Score=115.68 Aligned_cols=176 Identities=15% Similarity=0.108 Sum_probs=129.8
Q ss_pred HHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHH
Q 010323 287 LVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQ 366 (513)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 366 (513)
.++...+..++..........+.|.+.++.|.++.+.+ .......++..++.++.|+++||+|||+.+..+..+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 89 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMH-MVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS 89 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 34455555666666667778889999999999998887 66777788888999999999999999999988877777666
Q ss_pred HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhH
Q 010323 367 VMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFL 446 (513)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~ 446 (513)
+..... ++.+......++.+++.+... +....++.|.+|++.|+++.|+.+....++..++|.+.+
T Consensus 90 ~~~~~~-------------~~~~~l~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g 155 (471)
T PRK10504 90 LFCALS-------------GTLNELLLARVLQGVGGAMMV-PVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGG 155 (471)
T ss_pred HHHHHh-------------CCHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 654432 345555666667776665543 444555679999999999999999999999999999999
Q ss_pred HHHHhcchhhhHHHHH-HHHHHHHHHHhhccc
Q 010323 447 AMLCHFKAGIFFFFGG-WVVVMTTFVHFFLPE 477 (513)
Q Consensus 447 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 477 (513)
.+.++.++...+.... ...+.........|+
T Consensus 156 ~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 156 LLVEYASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999888654444333 333333334444444
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.4e-11 Score=115.35 Aligned_cols=175 Identities=14% Similarity=0.072 Sum_probs=126.5
Q ss_pred HHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHH
Q 010323 290 AILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMI 369 (513)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 369 (513)
......+.............|.+.+++|.++.+.+ .......++..++.++.|+++||+|||+.+..+..+..++.+..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 97 (406)
T PRK11551 19 LCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMG-WAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLAT 97 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 33333444444445566677888899999998888 88888889999999999999999999999999887777766555
Q ss_pred HHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHH
Q 010323 370 GSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAML 449 (513)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 449 (513)
... ++.+...+..++.+.+.+... +....++.|.+|+++|+++.++.+....+|..+++.+.+.+.
T Consensus 98 ~~~-------------~~~~~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 163 (406)
T PRK11551 98 AQA-------------WDFPSLLVARLLTGVGLGGAL-PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA 163 (406)
T ss_pred HHh-------------ccHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 443 445556666666666665544 344556689999999999999999999999999998887777
Q ss_pred HhcchhhhHHH-HHHHHHHHHHHHhhcccCC
Q 010323 450 CHFKAGIFFFF-GGWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 450 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 479 (513)
+..++...+.. +.+..+...+...++||++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 164 GDAAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 77666544443 3333333444445566643
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-11 Score=117.49 Aligned_cols=181 Identities=13% Similarity=0.069 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHH
Q 010323 286 QLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAA 365 (513)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 365 (513)
+.++...+................|.+.+ .|.++.+.+ .......++..++.++.|+++||+|||+.+..+..+.+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~ 104 (438)
T TIGR00712 27 QVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELG-FALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAV 104 (438)
T ss_pred HHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhH-HHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHH
Confidence 34444444444443333444556676655 599988888 8888888999999999999999999999988887777777
Q ss_pred HHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHh
Q 010323 366 QVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTF 445 (513)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 445 (513)
.+....... ...+.+.......+.+.+.+..+++. ...+.|.+|+++|+++.|+.+....+++.+++.+.
T Consensus 105 ~~~~~~~~~---------~~~~~~~l~~~~~l~g~~~g~~~~~~-~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~ 174 (438)
T TIGR00712 105 MLLMGFVPW---------ATSSIAIMFVLLFLNGWFQGMGWPPC-GRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLV 174 (438)
T ss_pred HHHHhcccc---------ccchHHHHHHHHHHHHHHhhcchHHH-HHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHH
Confidence 665543210 01223334444555666655555444 34447899999999999999999999999999887
Q ss_pred HHHHHh-cchhhhH-HHHHHHHHHHHHHHhhcccC
Q 010323 446 LAMLCH-FKAGIFF-FFGGWVVVMTTFVHFFLPET 478 (513)
Q Consensus 446 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 478 (513)
+...+. .++...+ ..+.+..+..++..++.||+
T Consensus 175 ~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 175 LLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 765543 4555444 33444455455555666654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.5e-11 Score=117.53 Aligned_cols=171 Identities=14% Similarity=0.053 Sum_probs=121.7
Q ss_pred hhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhc
Q 010323 298 QVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQL 377 (513)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (513)
...+........|.+.++.+.++.+.+ .......+...++.++.|+++||+|||+.+..+..+.+++...+......
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~s~~~~g-~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~-- 105 (417)
T PRK10489 29 SIFGLGLLGVAVPVQIQMMTGSTLQVG-LSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL-- 105 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc--
Confidence 333445667778888888888888777 88888999999999999999999999999888777666655554332110
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhh
Q 010323 378 GDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIF 457 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (513)
..++.+......++.+++.+....+. ..+..|..|+++|+++.++.+....+|..++|.+.+.+.+..++...
T Consensus 106 ------~~~~~~~l~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~ 178 (417)
T PRK10489 106 ------PEPSLLAIYLLGLWDGFFGSLGVTAL-LAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWN 178 (417)
T ss_pred ------CCCcHHHHHHHHHHHHHHHHHHHHHH-hhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHH
Confidence 11334444445555555544443333 44557999999999999999999999999999999999888776555
Q ss_pred HHHHHHHHHHHHHHHhhcccC
Q 010323 458 FFFGGWVVVMTTFVHFFLPET 478 (513)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~ 478 (513)
+...++..+...+..+..|+.
T Consensus 179 ~~~~~~~~~~~~~~~~~l~~~ 199 (417)
T PRK10489 179 YGLAAAGTFITLLPLLRLPAL 199 (417)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 555555555555555566654
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-10 Score=116.43 Aligned_cols=178 Identities=17% Similarity=0.115 Sum_probs=132.9
Q ss_pred HHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHH
Q 010323 287 LVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQ 366 (513)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 366 (513)
.+....+..+....-......-.|.+.+++|.+..+.. +....+.++...+.+..|+++||+|||+.+..+..+..++.
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~-~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~ 85 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELL-WIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLAS 85 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 44555555555555566677788999999999888887 77778888888899999999999999999999999888888
Q ss_pred HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceeccc-CChhhhhhHhHHHHHHHHHHHHHHHHHh
Q 010323 367 VMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEI-FPLEIRSAGQSINVAVGFLFTFLIAQTF 445 (513)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 445 (513)
+..... ++.+..++.-.+.+++.+...+.. .....+. .|+++|+++.|+......+|..++|.+.
T Consensus 86 ~~~~~a-------------~~~~~li~~r~l~G~g~~~~~~~~-~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lg 151 (495)
T PRK14995 86 LAAAFS-------------PTASWLIATRALLAIGAAMIVPAT-LAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVG 151 (495)
T ss_pred HHHHHc-------------CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877654 456666666677777665543333 3323344 4789999999999999999999999999
Q ss_pred HHHHHhcchhhhHHH-HHHHHHHHHHHHhhcccCC
Q 010323 446 LAMLCHFKAGIFFFF-GGWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 446 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 479 (513)
+.+.++.+|...+.. ..+..+..++..+++|+.+
T Consensus 152 g~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 152 GILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999998886654443 3344444445555666543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.3e-10 Score=110.48 Aligned_cols=176 Identities=14% Similarity=0.106 Sum_probs=122.0
Q ss_pred HHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhH----HHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHH
Q 010323 288 VMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTS----LLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQML 363 (513)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 363 (513)
+....+..++..........+.|.+.++.|.+..+. .+.......+...++.++.|+++||+|||+.+..+.....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 95 (408)
T PRK09874 16 LTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMG 95 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHH
Confidence 333444444555555666778888889888886543 1367777888889999999999999999999998887777
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHH
Q 010323 364 AAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQ 443 (513)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 443 (513)
++..++... ++.+...+...+.+++.+ . .+.......+..|++.|+.+.|+.+....++..++|.
T Consensus 96 ~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (408)
T PRK09874 96 IVMVLMGLA-------------QNIWQFLILRALLGLLGG-F-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPL 160 (408)
T ss_pred HHHHHHHHH-------------hhHHHHHHHHHHHHHhhh-h-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 766655443 344455555555554432 2 2333445578899999999999999999999999999
Q ss_pred HhHHHHHhcchhhhHH-HHHHHHHHHHHHHhhcccC
Q 010323 444 TFLAMLCHFKAGIFFF-FGGWVVVMTTFVHFFLPET 478 (513)
Q Consensus 444 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 478 (513)
+.+.+.+..++...+. ...+..+..+...+..+++
T Consensus 161 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 161 AGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999988877654433 3443344444444555554
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=115.02 Aligned_cols=163 Identities=15% Similarity=0.103 Sum_probs=111.2
Q ss_pred hHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010323 305 IGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFS 384 (513)
Q Consensus 305 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (513)
+....|++.++ |.+..+.+ ...+...++..++.++.|+++||+|||+.+..+..+..++.+.+.+... .
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g-~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~---------~ 116 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW---------A 116 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHH-HHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc---------c
Confidence 45567777666 99988888 8888899999999999999999999999999988888877776655310 0
Q ss_pred cchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhH-HHHHhcchhh-hHHHHH
Q 010323 385 KGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFL-AMLCHFKAGI-FFFFGG 462 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~ 462 (513)
..+.+.......+.+++.+...++... .+.|.+|++.|+++.|+.+....+|+.+.+++.+ .+....++.. +++.+.
T Consensus 117 ~~~~~~~~~~~~l~gi~~g~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~ 195 (452)
T PRK11273 117 TSSIAVMFVLLFLCGWFQGMGWPPCGR-TMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAF 195 (452)
T ss_pred cccHHHHHHHHHHHHHHHhccchHHHH-HHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 123444555556666666655544433 3468899999999999999888888755444432 2322334443 334444
Q ss_pred HHHHHHHHHHhhcccCC
Q 010323 463 WVVVMTTFVHFFLPETK 479 (513)
Q Consensus 463 ~~~~~~~~~~~~~~~~~ 479 (513)
+..+..++..+++||++
T Consensus 196 ~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 196 AAILVALFAFAMMRDTP 212 (452)
T ss_pred HHHHHHHHHHHHccCCH
Confidence 44554555556666543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.4e-11 Score=115.86 Aligned_cols=136 Identities=15% Similarity=0.116 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceee
Q 010323 82 LTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLS 161 (513)
Q Consensus 82 ~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~ 161 (513)
.++..+.+.++..+++++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+. ....+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~--~~~~~~ 328 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPA--LGVEVV 328 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHH--HHHHHH
Confidence 456667778888999999999999999999999999999898888888888888888999999999888877 777888
Q ss_pred ccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhc
Q 010323 162 EMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGAL 222 (513)
Q Consensus 162 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 222 (513)
|.+|+++|+++.++.+....+|..++|.+.+.+.+. .||+..|.+.++..++..+..+
T Consensus 329 ~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 329 KRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS---FGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998887664 4799999998887776655544
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3e-10 Score=110.06 Aligned_cols=168 Identities=14% Similarity=0.078 Sum_probs=120.3
Q ss_pred hhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhh
Q 010323 297 LQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQ 376 (513)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (513)
+............|.+.++.+.++.+.+ .......++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 19 ~~~~~~~~~~p~~~~i~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~---- 93 (394)
T PRK11652 19 VGQMAQTIYVPAIADMARDLNVREGAVQ-AVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA---- 93 (394)
T ss_pred HHHHHHHHHhccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH----
Confidence 3333344445567888899999999888 88888899999999999999999999999998887777776665443
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhh
Q 010323 377 LGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGI 456 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (513)
++.+...+...+.+++.+.. .+....+..|.++.+.++.+.+..+....++..++|.+.+.+.+..++..
T Consensus 94 ---------~~~~~l~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~ 163 (394)
T PRK11652 94 ---------HSLTVLIAASAIQGLGTGVG-GVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRA 163 (394)
T ss_pred ---------ccHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHH
Confidence 34455555555555554433 23334455788888999999999998889999999999999888777665
Q ss_pred hHHHH-HHHHHHHHHHHhhcccCC
Q 010323 457 FFFFG-GWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 457 ~~~~~-~~~~~~~~~~~~~~~~~~ 479 (513)
.+... ....+...+..+..||++
T Consensus 164 ~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 164 CYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccC
Confidence 44443 333444444445566653
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.3e-10 Score=109.66 Aligned_cols=164 Identities=13% Similarity=0.038 Sum_probs=117.9
Q ss_pred hhcchhhhHhcHHHH-HHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhh
Q 010323 298 QVTGINVIGFYAPVL-FRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQ 376 (513)
Q Consensus 298 ~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (513)
...+.+....+.+.+ .++.|.+..+.+ +......+...+..++.|+++||+|||+.+..+..+..++.+.+...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g-l~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~---- 96 (400)
T PRK11646 22 VVLGFFVVFPLISIRFVDQLGWAAVMVG-IALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA---- 96 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHH-HHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh----
Confidence 333344444455544 467899998888 88888888888889999999999999999999988888888776553
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhh
Q 010323 377 LGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGI 456 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (513)
++.+...+...+.+.+.+... +....++.|.+|+++|+++.|+.+....+|..++|.+.+.+. ..++..
T Consensus 97 ---------~~~~~l~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~ 165 (400)
T PRK11646 97 ---------HEPWLLWLSCILSGLGGTLFD-PPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRL 165 (400)
T ss_pred ---------ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHH
Confidence 345555555566665554333 433555579999999999999999999999999999999988 556544
Q ss_pred -hHHHHHHHHHHHHHHHhhccc
Q 010323 457 -FFFFGGWVVVMTTFVHFFLPE 477 (513)
Q Consensus 457 -~~~~~~~~~~~~~~~~~~~~~ 477 (513)
+++.+..+.+..++..+..|+
T Consensus 166 ~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 166 VCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc
Confidence 333334334444444455554
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-10 Score=109.61 Aligned_cols=144 Identities=17% Similarity=0.092 Sum_probs=109.4
Q ss_pred HHHHHHhhhcchhhhHhcHHH-HHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHH
Q 010323 291 ILIPFFLQVTGINVIGFYAPV-LFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMI 369 (513)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 369 (513)
..+.++...........+.|. +.++.|.++.+.+ .......++..++.++.|+++||+|||+.+..+..+..++.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~ 84 (366)
T TIGR00886 6 SWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLG-NLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA 84 (366)
T ss_pred HHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhh-HhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 444444555556677778885 6678999999988 88888999999999999999999999999999988888887776
Q ss_pred HHHHHhhcCCCCCCCcc-hhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHH
Q 010323 370 GSIMENQLGDQGGFSKG-NAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAM 448 (513)
Q Consensus 370 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 448 (513)
... + +.+...+..++.+.+.+ .+.+. ..++.|.+|+++|+.+.++......+|..+++.+.+.+
T Consensus 85 ~~~-------------~~~~~~~~~~~~~~g~~~~-~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l 149 (366)
T TIGR00886 85 GLA-------------VQSYSVLLLLRLFIGIAGG-SFASC-MPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI 149 (366)
T ss_pred HHH-------------hhhHHHHHHHHHHHHHhch-hhHhH-HHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 654 3 45555555555555533 33333 45568999999999999999988888887777777666
Q ss_pred HH
Q 010323 449 LC 450 (513)
Q Consensus 449 ~~ 450 (513)
..
T Consensus 150 ~~ 151 (366)
T TIGR00886 150 IG 151 (366)
T ss_pred HH
Confidence 54
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.1e-11 Score=117.99 Aligned_cols=176 Identities=16% Similarity=0.203 Sum_probs=131.4
Q ss_pred HHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHH
Q 010323 289 MAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVM 368 (513)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 368 (513)
..+.+..+.............|.+.++.|.+..+.+ .......++..++.++.|++.||+|||+.+..+..+..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 83 (485)
T TIGR00711 5 IVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQ-WVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhh-HHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 334444444555556677788999999999988888 8888889999999999999999999999999998888887776
Q ss_pred HHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHH
Q 010323 369 IGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAM 448 (513)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 448 (513)
.... ++.+..+...++.+++.+... +....++.|.+|++.|+++.++......+|..++|.+.+.+
T Consensus 84 ~~~~-------------~~~~~l~~~~~~~G~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 149 (485)
T TIGR00711 84 CGVA-------------PNLELMIIFRVIQGFGGGPLI-PLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWI 149 (485)
T ss_pred HhCc-------------CCHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHh
Confidence 6543 455556666666666655443 44456668999999999999999999999999999999999
Q ss_pred HHhcchhhhHHH-HHHHHHHHHHHHhhcccCC
Q 010323 449 LCHFKAGIFFFF-GGWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 449 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 479 (513)
.++.++...+.. ..+..+..++..+..|+++
T Consensus 150 ~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 150 IENYHWRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred ccCcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 988876544333 3333344444445555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-10 Score=115.78 Aligned_cols=163 Identities=17% Similarity=0.101 Sum_probs=116.5
Q ss_pred hHhcHHHHHHhcCCC--------chhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhh
Q 010323 305 IGFYAPVLFRTIKLS--------ESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQ 376 (513)
Q Consensus 305 ~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (513)
.....+....+.+.+ ..+.+ .......++..++.++.|+++||+|||+.+..+..+..++.++.....
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~--- 122 (481)
T TIGR00879 47 IGGALALPAFEFKFTSANSDSYSSSLWG-LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA--- 122 (481)
T ss_pred hhhhhhcHHHHHhcCCcccCCCChhHHH-HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---
Confidence 333444444555554 66676 888888999999999999999999999999998888887777665431
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHh---HHHHHhcc
Q 010323 377 LGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTF---LAMLCHFK 453 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~ 453 (513)
...+.+..++...+.+++.+... +....++.|.+|+++|+.+.++.+....+|..+++.+. +...+..+
T Consensus 123 -------~~~~~~~~~~~r~l~G~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 194 (481)
T TIGR00879 123 -------FALSVEMLIVGRVLLGIGVGIAS-ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLG 194 (481)
T ss_pred -------cccchHHHHHHHHHHHhhhhHHH-hHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Confidence 11233456666677777666554 34456668999999999999999999999999999987 44444556
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcccCC
Q 010323 454 AGIFFFFGGWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (513)
+...+...++..+..++..+++||+.
T Consensus 195 w~~~f~~~~~~~~~~~~~~~~l~~~~ 220 (481)
T TIGR00879 195 WRIPLGLQLIPAGLLFLGLFFLPESP 220 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 66555555555555555566677653
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.1e-11 Score=113.66 Aligned_cols=164 Identities=20% Similarity=0.160 Sum_probs=120.1
Q ss_pred cchhhhHhcHH-HHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcC
Q 010323 300 TGINVIGFYAP-VLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLG 378 (513)
Q Consensus 300 ~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (513)
..........| .+.++.|.+..+.+ ...+...+...++.++.|+++||+|||+.+..+..+..++.+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~------ 82 (352)
T PF07690_consen 10 FGFSIISPALPLYLAEELGLSPSQIG-LLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA------ 82 (352)
T ss_dssp HHHHHHHHHHH-HHHCCSTTTSHCHH-HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh------
Confidence 33445556666 66678899999988 88888899999999999999999999999999988888884444432
Q ss_pred CCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhH
Q 010323 379 DQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFF 458 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (513)
++.+..++..++.+.+.+... +....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..++...+
T Consensus 83 -------~~~~~~~~~~~l~g~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~ 154 (352)
T PF07690_consen 83 -------SNFWLLLIARFLLGIGSGFFS-PASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAF 154 (352)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHH
T ss_pred -------hhHHHHhhhcccccccccccc-ccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccc
Confidence 344466677777777765554 444566689999999999999999999999999999999988777765444
Q ss_pred -HHHHHHHHHHHHHHhhcccC
Q 010323 459 -FFGGWVVVMTTFVHFFLPET 478 (513)
Q Consensus 459 -~~~~~~~~~~~~~~~~~~~~ 478 (513)
+.+.+..+..++...+.+++
T Consensus 155 ~~~~~~~~~~~il~~~~~~~~ 175 (352)
T PF07690_consen 155 LISAILSLIAAILFILFLPEP 175 (352)
T ss_dssp HHHHHHHHHHHHHHHCCC---
T ss_pred ccccchhhhhhhhHhhhhhhc
Confidence 44444444434333444433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=112.40 Aligned_cols=141 Identities=13% Similarity=0.050 Sum_probs=123.7
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhc
Q 010323 74 YCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQA 153 (513)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~ 153 (513)
|+|.+..+.|.+.+...++..++.++.+++.||+|+|+.+.++.++.++..+..+++++.+.+++.+++.|++.+...+.
T Consensus 234 ~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~ 313 (382)
T TIGR00902 234 AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLA 313 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeccCCCCCccchhhHHH-HHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhh
Q 010323 154 SSVPLYLSEMAPPRHRGAFNIGYE-LCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGA 221 (513)
Q Consensus 154 ~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 221 (513)
...++.+. |+++|++..++++ ...++|..+++.+++.+.+. .|+ ..|++.++++++..++.
T Consensus 314 --~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~---~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 314 --AMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT---LGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred --HHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccH-HHHHHHHHHHHHHHHHH
Confidence 99999988 8889999999986 57789999999999998775 355 55666766666554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.8e-11 Score=114.77 Aligned_cols=152 Identities=14% Similarity=0.061 Sum_probs=109.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhh---c-hhHHHHHHHHHHHHhhhhh
Q 010323 74 YCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGA---A-LNIYMLIFGRVLLGVGIGF 149 (513)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~l~Gi~~~~ 149 (513)
++|.+......+.....+...++.+++|+++||+|||+++..+.++..++.+.... . ++.+.+++..++.|++.+.
T Consensus 280 ~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (438)
T PRK09952 280 NLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDM 359 (438)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Confidence 44556666555666666777888999999999999999998887766555433322 2 2344555566777888887
Q ss_pred hhhcccccceeeccCCCCCccchhhHHH-HHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCCh
Q 010323 150 ANQASSVPLYLSEMAPPRHRGAFNIGYE-LCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETP 228 (513)
Q Consensus 150 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 228 (513)
..+. ..+++.|.+|.+.|+...++.. .+..+|..++|.+.+.+.+..+ .+|+..+...++..++..+..+.++|++
T Consensus 360 ~~~~--~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~-~~~~~~~~~~~~~~~i~~v~~~~~~~~~ 436 (438)
T PRK09952 360 VVCV--QQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG-GSWHSVAIYLLAGCLISAMTALLMKDNQ 436 (438)
T ss_pred HHHH--HHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHccccc
Confidence 7777 7788999999999988888854 4455888999998887765332 2588888877777777666666667653
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-11 Score=119.26 Aligned_cols=141 Identities=9% Similarity=-0.019 Sum_probs=115.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhHHHhhh--hhhHHHHHH--HHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhh
Q 010323 75 CKFDSQLLTSFTSSLYIAGLIASLFASSVTRA--FGRRASILV--GGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFA 150 (513)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr--~Grr~~l~~--~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~ 150 (513)
+|.+..+.+++.+...++..++.++.|+++|| +++|+...+ +.++.+++.++..+.++++.+++.+++.|++.+..
T Consensus 271 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~ 350 (455)
T TIGR00892 271 KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSV 350 (455)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchH
Confidence 47789999999999999999999999999997 334443333 44444555566677889999999999999999988
Q ss_pred hhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHH
Q 010323 151 NQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTL 219 (513)
Q Consensus 151 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 219 (513)
.+. ..+++.|.+|++++++..+++.....+|..+||.+++.+.+..+ +|++.|++.+++.++..+
T Consensus 351 ~~~--~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g--~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 351 GAL--LFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK--NYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHH--HHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC--CcchHHHHhhHHHHHHHH
Confidence 888 88899999999999999999999999999999999887765432 599999988877665544
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.6e-10 Score=109.09 Aligned_cols=162 Identities=13% Similarity=0.090 Sum_probs=118.6
Q ss_pred hhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCC
Q 010323 303 NVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGG 382 (513)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (513)
.....-+|.+.++++.+..... .....+.++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 33 ~~~~p~l~~i~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a---------- 101 (413)
T PRK15403 33 DLIQPGIINVVRDFNADVSLAP-ASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT---------- 101 (413)
T ss_pred HhhccCHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc----------
Confidence 3344445566678899888888 77788889999999999999999999999998888777777666543
Q ss_pred CCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHH
Q 010323 383 FSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGG 462 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (513)
++.+..++.-++.+++.+.. .+....+..|.+|++.++++.++.+....++..++|.+.+.+.++.++...+...+
T Consensus 102 ---~~~~~l~~~r~l~Gi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~ 177 (413)
T PRK15403 102 ---TSMTQFLIARFIQGTSICFI-ATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIA 177 (413)
T ss_pred ---CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 45555566666666655432 33445566789999999999999999999999999999988888877665444444
Q ss_pred HH-HHHHHHHHhhcccCC
Q 010323 463 WV-VVMTTFVHFFLPETK 479 (513)
Q Consensus 463 ~~-~~~~~~~~~~~~~~~ 479 (513)
+. .+..+...+.+||++
T Consensus 178 ~~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 178 VMGLIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHHHHHhCCCCc
Confidence 33 333333345567654
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-10 Score=109.45 Aligned_cols=151 Identities=14% Similarity=0.071 Sum_probs=118.5
Q ss_pred HHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHH
Q 010323 287 LVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQ 366 (513)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 366 (513)
.++...+..+.............|.+.++.|.+..+.+ .......++..++.++.|+++||+|||+.+..+..+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G-~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~ 85 (381)
T PRK03633 7 PVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVG-VVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGC 85 (381)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555656666677788889999999999988888 88888999999999999999999999999999888888877
Q ss_pred HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhH
Q 010323 367 VMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFL 446 (513)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~ 446 (513)
...... ++.+...+...+.+.+.+...... .....+..|+++|+++.+..+....+|..+++.+.+
T Consensus 86 ~~~~~~-------------~~~~~l~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 151 (381)
T PRK03633 86 AGLGLM-------------VGFWSWLAWRFVAGIGCAMIWVVV-ESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVS 151 (381)
T ss_pred HHHHHh-------------ccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 766553 455666666666666655443332 233357788899999999999999999999999998
Q ss_pred HHHHhc
Q 010323 447 AMLCHF 452 (513)
Q Consensus 447 ~~~~~~ 452 (513)
.+.+..
T Consensus 152 ~l~~~~ 157 (381)
T PRK03633 152 KVSTEL 157 (381)
T ss_pred cccccc
Confidence 877654
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.1e-10 Score=107.99 Aligned_cols=163 Identities=13% Similarity=-0.049 Sum_probs=117.8
Q ss_pred hhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCC
Q 010323 302 INVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQG 381 (513)
Q Consensus 302 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (513)
...+....|.+.++++.+..+.+ ...+...++..++.+..|+++||+|||+.+.........+.. ....
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g-~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~--------- 75 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELG-LLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLD--------- 75 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHH---------
Confidence 34556678888899999998888 778888899999999999999999988876544433333221 1111
Q ss_pred CCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHH-
Q 010323 382 GFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFF- 460 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 460 (513)
..+.+..++.-++.+.+.+.. .+. ....+|.+|+++|+++.++.+....+|..+++.+.+.+.++.+|...+..
T Consensus 76 ---~~~~~~l~~~R~l~G~g~~~~-~~~-~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 76 ---PFNYEWLLACQLLAALGQPFL-LNA-FAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred ---hccHHHHHHHHHHHHhHhHHH-HHH-HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 134556666666666665532 233 23337999999999999999999999999999999999988887765544
Q ss_pred HHHHHHHHHHHHhhcccCCC
Q 010323 461 GGWVVVMTTFVHFFLPETKN 480 (513)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~ 480 (513)
+++..+..++.++.+||.++
T Consensus 151 ~~l~~~~~~~~~~~lp~~p~ 170 (368)
T TIGR00903 151 AAVAAAGIILVLAALPALPF 170 (368)
T ss_pred HHHHHHHHHHHHHHcCCCCC
Confidence 55555556666667777543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.1e-10 Score=109.77 Aligned_cols=141 Identities=13% Similarity=0.025 Sum_probs=101.2
Q ss_pred HHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHH
Q 010323 293 IPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSI 372 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 372 (513)
..++...........+.|.+.+++|.+..+.+ .......++..++.++.|+++||+|||+.+..+.++..++.++..+.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~ 121 (476)
T PLN00028 43 ISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIG-NAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV 121 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh
Confidence 33444444445566667788889999988887 66777888889999999999999999999988887777776655543
Q ss_pred HHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHH
Q 010323 373 MENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAML 449 (513)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 449 (513)
.+.+...+..++.+++.+.. .+. ..+++|.+|++.|+.+.|+.+...++|+.+++.+.+.+.
T Consensus 122 -------------~s~~~l~~~r~l~G~~~~~~-~~~-~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~ 183 (476)
T PLN00028 122 -------------SSATGFIAVRFFIGFSLATF-VSC-QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVF 183 (476)
T ss_pred -------------cCHHHHHHHHHHHHHHHHhh-HHH-HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555554432 233 334579999999999999998888888877776665543
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-09 Score=104.57 Aligned_cols=152 Identities=11% Similarity=0.090 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHHhhhcchhhhHhcHHHHHH-hcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHH
Q 010323 285 PQLVMAILIPFFLQVTGINVIGFYAPVLFR-TIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQML 363 (513)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 363 (513)
+|.++...+.+...+..........+.+.+ +++++..+.+ ...+...+...++++..|++.||+|.|+++.++..+..
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g-~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLF-LLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 355666666666666665666666666655 6999999988 77888888888999999999999999999999988888
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHH
Q 010323 364 AAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQ 443 (513)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 443 (513)
+..+...+.... ..++.+..++..++.+++ +..+.+. ...+++.+|+++||++.|+....+++|..+++.
T Consensus 112 i~~~~~~~a~~~--------~~~s~~~lli~r~l~Gig-g~~f~~~-~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~ 181 (462)
T PRK15034 112 IPCVWLGIAVQN--------PNTPFGIFIVIALLCGFA-GANFASS-MGNISFFFPKAKQGSALGINGGLGNLGVSVMQL 181 (462)
T ss_pred HHHHHHHHHHcc--------cCCCHHHHHHHHHHHHHH-HHhHHHH-HHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHH
Confidence 777766653100 113455666666666665 4444443 455589999999999999997777777766655
Q ss_pred HhHH
Q 010323 444 TFLA 447 (513)
Q Consensus 444 ~~~~ 447 (513)
+.+.
T Consensus 182 l~p~ 185 (462)
T PRK15034 182 VAPL 185 (462)
T ss_pred HHHH
Confidence 5544
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.5e-10 Score=110.69 Aligned_cols=151 Identities=20% Similarity=0.117 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHH
Q 010323 321 STSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVA 400 (513)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (513)
.+.+ .......++.+++.++.|++.||+|||+.+.++.++..++.++....... .+..+.+..++..++.++
T Consensus 56 ~~~~-~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~-------~~~~~~~~~~~~r~l~G~ 127 (502)
T TIGR00887 56 SVSA-AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGS-------SPKSVMATLCFWRFWLGV 127 (502)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCc-------ccchHHHHHHHHHHHHHH
Confidence 3444 77888889999999999999999999999998888888777665543100 000124556667777777
Q ss_pred hhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHH-----------------------hcchhhh
Q 010323 401 GFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLC-----------------------HFKAGIF 457 (513)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~ 457 (513)
+.+...++. ..+..|.+|++.|+++.++.+....+|..+++.+...+.. ..+|...
T Consensus 128 ~~g~~~~~~-~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~ 206 (502)
T TIGR00887 128 GIGGDYPLS-AIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRIL 206 (502)
T ss_pred HHhhhhHHH-HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHH
Confidence 776665444 5677899999999999999999999998888887765532 1245555
Q ss_pred HHHHHHHHHHHHHHHhhcccCCC
Q 010323 458 FFFGGWVVVMTTFVHFFLPETKN 480 (513)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~ 480 (513)
+.+.++..+...+..+++||+.+
T Consensus 207 ~~~~~ip~~i~~~~~~~lpESpr 229 (502)
T TIGR00887 207 IGFGAVPALLALYFRLTIPETPR 229 (502)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHH
Confidence 56665555556666677888743
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.22 E-value=3e-10 Score=110.22 Aligned_cols=151 Identities=14% Similarity=0.024 Sum_probs=106.1
Q ss_pred HHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHH
Q 010323 293 IPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSI 372 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 372 (513)
+..+....+......+.+.+.++.|.+..+.+ ...+...++..++.++.|++.||+|||+.+..+..+..++.......
T Consensus 20 l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~ 98 (402)
T TIGR00897 20 IGVVVFMTGDGLEQGWLSPFLKALGLSPQQSA-SAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVF 98 (402)
T ss_pred HHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhH-HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334455566777788999998888 88889999999999999999999999999999888887776544321
Q ss_pred HHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHH-HHHHHHhHHHHHh
Q 010323 373 MENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFT-FLIAQTFLAMLCH 451 (513)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~ 451 (513)
.. ...+.+.......+.+.+.+.... .......+..|+++|+++.|+.+....+|. .++|.+.+.+.+.
T Consensus 99 ~~---------~~~~~~~l~~~~~i~G~g~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~ 168 (402)
T TIGR00897 99 GL---------GHANYPLILLFYGIRGLGYPLFAY-SFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA 168 (402)
T ss_pred hc---------cCccHHHHHHHHHHHHcchHHHHh-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 10 112344444444555554443322 223344688899999999999999998886 5788888888777
Q ss_pred cch
Q 010323 452 FKA 454 (513)
Q Consensus 452 ~~~ 454 (513)
.++
T Consensus 169 ~g~ 171 (402)
T TIGR00897 169 FGE 171 (402)
T ss_pred cch
Confidence 663
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.4e-10 Score=107.24 Aligned_cols=156 Identities=16% Similarity=0.045 Sum_probs=111.7
Q ss_pred cHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcch
Q 010323 308 YAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGN 387 (513)
Q Consensus 308 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (513)
..|.+.++.+.++.+.+ .......++..++.++.|+++||+|||+.+..+..+..++.+..... ++
T Consensus 28 ~~~~i~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------------~~ 93 (401)
T PRK11043 28 AFKAIQADLQTSASAVS-ASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-------------ES 93 (401)
T ss_pred hHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-------------cC
Confidence 34455678899988888 88888899999999999999999999999998887777766665543 34
Q ss_pred hHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHHHHHH
Q 010323 388 AYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVM 467 (513)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (513)
.+...+...+.+.+.+... +....+..|.+|++.++...+..+....++..++|.+.+.+.++.++...+.......+.
T Consensus 94 ~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~ 172 (401)
T PRK11043 94 AAQLLVLRFVQAVGVCSAA-VIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLL 172 (401)
T ss_pred HHHHHHHHHHHHhhhHHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4455555555555443332 233445578999998988999888888999999999999999888876544443333333
Q ss_pred HHHHHhhcccC
Q 010323 468 TTFVHFFLPET 478 (513)
Q Consensus 468 ~~~~~~~~~~~ 478 (513)
..+..+..++.
T Consensus 173 ~~~~~~~~~~~ 183 (401)
T PRK11043 173 LILPTLRLKPS 183 (401)
T ss_pred HHHHHHHcCCC
Confidence 33334444443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-10 Score=110.86 Aligned_cols=160 Identities=18% Similarity=0.114 Sum_probs=121.6
Q ss_pred hhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCC
Q 010323 304 VIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGF 383 (513)
Q Consensus 304 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (513)
......|.+.++.|.++.+.+ .......++..++.++.|+++||+|||+.+..+..+..++...+...
T Consensus 9 ~~~p~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~----------- 76 (377)
T PRK11102 9 MYLPALPVIAADFGVSAGSVQ-MTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA----------- 76 (377)
T ss_pred HHhccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 344567788888999998888 78888889999999999999999999999999888888887776654
Q ss_pred CcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhH-HHHH
Q 010323 384 SKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFF-FFGG 462 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 462 (513)
++.+.......+.+++.+... +....+..|.+|++.|+++.++.+....++..++|.+.+.+.+..++...+ ..+.
T Consensus 77 --~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 153 (377)
T PRK11102 77 --QTIDQLIYMRFLHGLAAAAAS-VVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLAL 153 (377)
T ss_pred --ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 344555555666666555443 333455689999999999999999999999999999999999887765443 3444
Q ss_pred HHHHHHHHHHhhcccC
Q 010323 463 WVVVMTTFVHFFLPET 478 (513)
Q Consensus 463 ~~~~~~~~~~~~~~~~ 478 (513)
+..+..++..+..||+
T Consensus 154 ~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 154 AAILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 4444444555556654
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-09 Score=102.66 Aligned_cols=176 Identities=14% Similarity=0.101 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHH
Q 010323 285 PQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSEST-SLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQML 363 (513)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 363 (513)
+..+.++...++..+- ....+..|++.+++|++..+ .+ .+...+..+..+..+.+|+++||+|.|+.+.++.+...
T Consensus 27 ~~~~~lC~fGF~~e~R--~n~s~a~p~L~~elglT~~qv~G-~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Ws 103 (511)
T TIGR00806 27 VLVLYLCFYGFMAQFR--PGESFITPYLLTVLNFTEETVTN-EIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFV 103 (511)
T ss_pred HHHHHHHHHHHHHHhh--chHHHHHHHHHHHcCCCHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 3444455555554443 44566678888899999999 66 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHH
Q 010323 364 AAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQ 443 (513)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 443 (513)
+..++.++. .+.+...+.-+++|.+-+..+ ....++.+.+|++.|+++.|+.+....+|.+++++
T Consensus 104 l~t~L~~fa-------------~Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~ 168 (511)
T TIGR00806 104 CVWLLLLLG-------------TSVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSV 168 (511)
T ss_pred HHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888875 456777788888888887776 44566689999999999999999999999999999
Q ss_pred HhHHHHHhcchhh---hHHHHHHHHHHHHHHHhhcccCC
Q 010323 444 TFLAMLCHFKAGI---FFFFGGWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 444 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 479 (513)
+.+. ....++.. ...+......++++..+++|..+
T Consensus 169 L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~ 206 (511)
T TIGR00806 169 LGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPK 206 (511)
T ss_pred HHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999 55666443 33344455566666667777443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.6e-10 Score=107.75 Aligned_cols=168 Identities=11% Similarity=0.059 Sum_probs=116.2
Q ss_pred HHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHH
Q 010323 293 IPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSI 372 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 372 (513)
+..+....+........+.+.++.+.++.+.+ .......+...+..++.|+++||+|||+++..+..+..++.+.+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~ 88 (393)
T PRK11195 10 AAQFFSALADNALLFAAIALLKELHYPDWSQP-LLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG 88 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH
Confidence 33333333333344445556778888877777 78888889999999999999999999999999988887766655432
Q ss_pred HHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhc
Q 010323 373 MENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHF 452 (513)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 452 (513)
.+. ....++.+.+.+.. .|....++.|.+|+++|+++.|+.+....++..++|.+.|.+.+..
T Consensus 89 -------------~~~---~~~r~l~G~~~a~~-~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~ 151 (393)
T PRK11195 89 -------------IHP---LLAYGLVGIGAAAY-SPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH 151 (393)
T ss_pred -------------HHH---HHHHHHHHHHHHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 33334555555544 4555667789999999999999999999999999999999998865
Q ss_pred chhhhHHHHHHHHHHHHHHHhhcccCC
Q 010323 453 KAGIFFFFGGWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (513)
+...+.....+.+...+..+.+||.+
T Consensus 152 -~~~~~~i~~~~~~~~~~~~~~l~~~~ 177 (393)
T PRK11195 152 -AEAALAVCALIYLLAALFNLFIPRLG 177 (393)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 33222333333333344445666543
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-08 Score=96.78 Aligned_cols=324 Identities=16% Similarity=0.169 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCC
Q 010323 86 TSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAP 165 (513)
Q Consensus 86 ~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~ 165 (513)
.++-+....+++++.+.+.|+.|.|+.+.++...+....+..-+ +|-+.++.+-.+.|+|.+..+.. --.|++|..+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~G--qG~ylt~~st 132 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTG--QGGYLTSNST 132 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecc--cceehhhcCC
Confidence 67777788899999999999999999999999999887776655 45677788889999999999988 8889999999
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCc-----cchH--------------HHHHhhHHHHHHHHHhhcccCC
Q 010323 166 PRHRGAFNIGYELCTAIGILAASLINYGTQKIKGG-----WGWR--------------ISLAMAAAPALILTLGALFLPE 226 (513)
Q Consensus 166 ~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~-----~~wr--------------~~f~~~~~~~~~~~~~~~~~~e 226 (513)
++++.+..++.-+....+.++|..+-.......+. .+-+ ..+.+...+..+..+...+.|.
T Consensus 133 ~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~ 212 (461)
T KOG3098|consen 133 RETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPS 212 (461)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCc
Confidence 99999999999888888888887764433322110 1111 1111111111222222233333
Q ss_pred ChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhH
Q 010323 227 TPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIG 306 (513)
Q Consensus 227 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (513)
+.. ...++. . +...+..++..++....++.+.+....+...........
T Consensus 213 ~~~-~~~~~~-----------------------------~-~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~ 261 (461)
T KOG3098|consen 213 KDV-VNCKSS-----------------------------S-ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWIS 261 (461)
T ss_pred cch-hhhhhh-----------------------------c-cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHh
Confidence 210 000000 0 000011122222222333333333222222111111112
Q ss_pred hcHHHHH--HhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc---cCcchHHHHhHHHHHHHHHHHHHHHHhhcC--C
Q 010323 307 FYAPVLF--RTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDK---LGRKVLFLVGGIQMLAAQVMIGSIMENQLG--D 379 (513)
Q Consensus 307 ~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 379 (513)
.+...+. ...+.+............+.+.+++....+.+.+| +|+++.+.++..+..+..++.........+ +
T Consensus 262 iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~ 341 (461)
T KOG3098|consen 262 IYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRP 341 (461)
T ss_pred ccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCC
Confidence 2222111 13344443333356666777788888888877765 578888888877777776666554332221 1
Q ss_pred --CC-CCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHh
Q 010323 380 --QG-GFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTF 445 (513)
Q Consensus 380 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 445 (513)
.. ....+......++..+.+.+-+.. ....+.++...+| +.|..+.++.-.-..++..++-...
T Consensus 342 t~~~~~~~~~~~~~~~ii~~l~G~~D~~~-~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~ 408 (461)
T KOG3098|consen 342 TDSPPLLFTPSYYLALIIGFLLGFGDACF-NTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFS 408 (461)
T ss_pred CcccccccccchhHHHHHHHHHhhHHHHH-HHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhh
Confidence 00 111123445556666666665543 4444566677774 7777887777776666665543333
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.2e-10 Score=107.16 Aligned_cols=164 Identities=14% Similarity=0.057 Sum_probs=117.6
Q ss_pred chhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCC
Q 010323 301 GINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQ 380 (513)
Q Consensus 301 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (513)
....+....|.+.++++.+..+.+ .......++..++.++.|+++||+|||+.+..+.....++.......
T Consensus 28 ~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------- 98 (406)
T PRK15402 28 ANDMIQPGMLAVVEDFNAGAEWVP-TSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA-------- 98 (406)
T ss_pred hhhhHhcchHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--------
Confidence 344445556777788999988888 77788889999999999999999999999998888777776665543
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHH
Q 010323 381 GGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFF 460 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (513)
++.+.......+.+.+.+... +.......|.+|++.|.++.++......++..++|.+.+.+.++.++...+.+
T Consensus 99 -----~~~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~ 172 (406)
T PRK15402 99 -----QSIEQFTLLRFLQGIGLCFIG-AVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVL 172 (406)
T ss_pred -----ccHHHHHHHHHHHHhHhhhHH-HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence 344445555555555544332 34455557899999999999998888888899999999998887776544443
Q ss_pred -HHHHHHHHHHHHhhcccCC
Q 010323 461 -GGWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 461 -~~~~~~~~~~~~~~~~~~~ 479 (513)
+++..+.........||++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 173 FAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 4444444443444566654
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.4e-10 Score=108.93 Aligned_cols=176 Identities=13% Similarity=0.109 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHhhhcchhhhHhcHHHHH-HhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHhHHHHH
Q 010323 286 QLVMAILIPFFLQVTGINVIGFYAPVLF-RTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDK-LGRKVLFLVGGIQML 363 (513)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~ 363 (513)
+.++..+...+....+++....+++.|+ ++.|.+..++. ...........+..+++|+++|| +|||+.+..+.++..
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~-~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~ 92 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAF-ITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLA 92 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHH
Confidence 3344444445555566677776666666 45888888877 66666666677777899999999 999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChh--hhhhHhHHHHHHHHHHHHHH
Q 010323 364 AAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLE--IRSAGQSINVAVGFLFTFLI 441 (513)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~~~~~~ 441 (513)
++.+.+.+.. .......+...+.+.+.+...+ ....++.|.+|++ .|+.+.++.+...++|.+++
T Consensus 93 ~g~~~~~~~~------------~~~~ll~~~~~l~~ig~g~~~~-~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g 159 (489)
T PRK10207 93 IGYFMTGMSL------------LKPDLIFIALGTIAVGNGLFKA-NPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLIS 159 (489)
T ss_pred HHHHHHHHhc------------cchhHHHHHHHHHHhccccccC-CHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHH
Confidence 9888776541 1122233445555555555543 3356668999877 45778999999999999999
Q ss_pred HHHhHHHHHhcchhhhHHHHHHHHHHHHHHHhhc
Q 010323 442 AQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFL 475 (513)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (513)
|.+.+++.++.++...+....+..+.+++.+...
T Consensus 160 ~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~ 193 (489)
T PRK10207 160 LSLAPVIADKFGYSVTYNLCGAGLIIALLVYFAC 193 (489)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999887665555544444444444443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-09 Score=108.48 Aligned_cols=190 Identities=12% Similarity=0.019 Sum_probs=118.5
Q ss_pred HHHHHHHHHHhhhcchhhhHhcHHHHHHhc--------CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHh
Q 010323 287 LVMAILIPFFLQVTGINVIGFYAPVLFRTI--------KLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVG 358 (513)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 358 (513)
..+...+..+........+....+.+.+.+ +.+..+.+ ...+...++..++.++.|+++||+|||+.+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~ 91 (479)
T PRK10077 13 ITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLG-FCVASALIGCIIGGALGGYCSNRFGRRDSLKIA 91 (479)
T ss_pred HHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 334444444433333333444444444443 66777777 888889999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHH
Q 010323 359 GIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFT 438 (513)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~ 438 (513)
..+..++.+...+........ ...+....+..++.-++.+++.+... +....+++|.+|++.|+.+.++.+....+|.
T Consensus 92 ~~l~~i~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~R~l~G~~~g~~~-~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~ 169 (479)
T PRK10077 92 AVLFFISALGSAWPEFGFTSI-GPDNTGYVPEFVIYRIIGGIGVGLAS-MLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQ 169 (479)
T ss_pred HHHHHHHHHHHHhhccccccc-cccchhHHHHHHHHHHHHhhhHhHHh-hHHHHHHHhhCChhhhhHHHHHHHHHHHHHH
Confidence 888777666554321000000 00011223344455566666666554 4445666899999999999999998888888
Q ss_pred HHHHHHhHHHH--------HhcchhhhHHHHHHHHHHHHHHHhhcccCC
Q 010323 439 FLIAQTFLAML--------CHFKAGIFFFFGGWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 439 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (513)
.+++.+.+.+. +..+|...+...++..++..+..+++||++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~ 218 (479)
T PRK10077 170 LVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETP 218 (479)
T ss_pred HHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 87766544332 234555444444444444455566677764
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.9e-10 Score=112.54 Aligned_cols=180 Identities=10% Similarity=-0.096 Sum_probs=125.8
Q ss_pred HHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHH
Q 010323 288 VMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQV 367 (513)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 367 (513)
+...++.++.....-..+....|.+.+++|.+..+.+ ...+...++..++.++.|+++||+|+|+.+..+.++.+++.+
T Consensus 31 ~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~ 109 (467)
T PRK09556 31 YLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELG-MIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICML 109 (467)
T ss_pred HHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHH
Confidence 3344444444433344455667888899999999888 888888999999999999999999999999888887777776
Q ss_pred HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHH
Q 010323 368 MIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLA 447 (513)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 447 (513)
.+...... ..++.+..++..++.+++.+...+.. ..++.|.+|+++||++.|+.+....+|..+++.+...
T Consensus 110 ~~~~~~~~--------~~~~~~~l~~~r~l~G~~~~~~~~~~-~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~ 180 (467)
T PRK09556 110 GFGASLGS--------GSVSLGLMIALWALSGFFQSTGGPCS-YSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALW 180 (467)
T ss_pred HHHHHHhc--------ccchHHHHHHHHHHHHHHHhccchHH-HHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHH
Confidence 66543211 11455666666677777766665444 4566899999999999999999999999999888776
Q ss_pred HHHhc---chhh-hHHHHHHHHHHHHHHHhhccc
Q 010323 448 MLCHF---KAGI-FFFFGGWVVVMTTFVHFFLPE 477 (513)
Q Consensus 448 ~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~ 477 (513)
+.+.. ++.. +.+.+.+.++.+++.+++.++
T Consensus 181 ~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~ 214 (467)
T PRK09556 181 GANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSD 214 (467)
T ss_pred HHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCC
Confidence 66543 2322 333344444444444444443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-09 Score=99.98 Aligned_cols=178 Identities=13% Similarity=0.076 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHH
Q 010323 285 PQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLA 364 (513)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 364 (513)
++.++...+.+...+.....+....+.+-+++++|+.|.. ++..+..+.+.+.++..|.+.||+|.|++..++.++..+
T Consensus 13 ~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~-ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~I 91 (417)
T COG2223 13 RRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKG-LLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLI 91 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHH-HHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHH
Confidence 4455555566666666666666667777788999999999 888888999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHH
Q 010323 365 AQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQT 444 (513)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~ 444 (513)
-.+.+.+.. .+++.+..+++..+.+.+.+ .+ .+...++++.+|++++|.+.|+.. .+++|..+...+
T Consensus 92 P~~~~~~a~----------~~~~~~~ll~~gll~G~~Ga-sF-av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~ 158 (417)
T COG2223 92 PCLGLAFAV----------TYPSTWQLLVIGLLLGLAGA-SF-AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLV 158 (417)
T ss_pred HHHHHHHHc----------cCCchHHHHHHHHHHhcccc-ee-hcccccccccCChhhhhHHHHHhc-cccccHHHHHHH
Confidence 888877763 22333455555555554433 32 334556689999999999999999 999999999888
Q ss_pred hHHHHHhcc---hhh-hHHHHHHHHHHHHHHHhhcc
Q 010323 445 FLAMLCHFK---AGI-FFFFGGWVVVMTTFVHFFLP 476 (513)
Q Consensus 445 ~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~ 476 (513)
.+.+....+ +.. ..+......+..+..++...
T Consensus 159 ~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 159 APLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 888888777 433 33344444444444455443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-10 Score=112.08 Aligned_cols=139 Identities=18% Similarity=0.090 Sum_probs=107.4
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHH--HHhhh--chhHHHHHHHHHHHHhhhh
Q 010323 73 NYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGS--ALGGA--ALNIYMLIFGRVLLGVGIG 148 (513)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~l~~~r~l~Gi~~~ 148 (513)
+++|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+..+..+.. +...+ .++.+.+.+..++.|++.+
T Consensus 248 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 327 (394)
T TIGR00883 248 QTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGG 327 (394)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 3456688899999999999999999999999999999998876554444333 22222 2466777788889999988
Q ss_pred hhhhcccccceeeccCCCCCccchhhH-HHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHH
Q 010323 149 FANQASSVPLYLSEMAPPRHRGAFNIG-YELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPAL 215 (513)
Q Consensus 149 ~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~ 215 (513)
...+. ..+++.|.+|+++|+++.++ ...+..+|..++|.+++.+.+..+ +|+..++...+..+
T Consensus 328 ~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g--~~~~~~~~~~~~~l 391 (394)
T TIGR00883 328 MYTGP--MGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG--DWYAIGYYLAALAL 391 (394)
T ss_pred HHhhh--HHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC--cchhHHHHHHHHHH
Confidence 88888 88999999999999999987 456667888899999888776532 28777766655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.2e-10 Score=112.41 Aligned_cols=150 Identities=13% Similarity=-0.022 Sum_probs=109.6
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHH
Q 010323 315 TIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVL 394 (513)
Q Consensus 315 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (513)
+++++..+.+ .......++..++.++.|++.||+|+|+.+..+.++..++.++..... ..+.+..++.
T Consensus 70 ~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~ 137 (465)
T TIGR00894 70 NFKWSGALQG-LILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA-----------GGGIALVVFC 137 (465)
T ss_pred CCCCCHHHhh-HHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH-----------HcCchHHHHH
Confidence 4667777777 888888999999999999999999999999988887777766654331 0233445555
Q ss_pred HHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhc-chhhhHHHHHH-HHHHHHHHH
Q 010323 395 ICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHF-KAGIFFFFGGW-VVVMTTFVH 472 (513)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~ 472 (513)
-++.+++.+... +....+..|.+|++.|+++.|+.+....+|..+++.+.+.+.+.. ++...+.+.++ ..+..++.+
T Consensus 138 r~~~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~ 216 (465)
T TIGR00894 138 RVIQGLAQGSVS-PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWF 216 (465)
T ss_pred HHHHHHhcccch-hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHH
Confidence 666666666554 444566689999999999999999999999999999999998884 76654444333 333333333
Q ss_pred hhccc
Q 010323 473 FFLPE 477 (513)
Q Consensus 473 ~~~~~ 477 (513)
...++
T Consensus 217 ~~~~~ 221 (465)
T TIGR00894 217 VFPAD 221 (465)
T ss_pred HHhcC
Confidence 44443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-09 Score=104.00 Aligned_cols=149 Identities=13% Similarity=0.029 Sum_probs=114.8
Q ss_pred HHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHH
Q 010323 290 AILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMI 369 (513)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 369 (513)
.....++.............|.+.++++.+..+.+ ...+...++..++++..+++.||+|||+.+..+..+.+++..++
T Consensus 7 ~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g-~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~ 85 (410)
T TIGR00885 7 LITSLFALWGFANDITNPMVPQFQQAFTLTAFQAA-LVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLF 85 (410)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 33344444444445566778888889999999888 88899999999999999999999999999999999988887765
Q ss_pred HHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHH
Q 010323 370 GSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAML 449 (513)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 449 (513)
.... ..++.+..+...++.+.+.+....+. ..+..+..|++.|++..++.+....+|..++|.+.+.+.
T Consensus 86 ~~~~----------~~~~~~~~l~~~~l~G~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 86 WPAA----------EIMNYTLFLVGLFILTAGLGFLETAA-NPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HHHH----------hhccHHHHHHHHHHHHhhHHHHHhhh-hHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4331 11345566666677777776665444 334467889999999999999999999999999988775
Q ss_pred H
Q 010323 450 C 450 (513)
Q Consensus 450 ~ 450 (513)
.
T Consensus 155 ~ 155 (410)
T TIGR00885 155 L 155 (410)
T ss_pred h
Confidence 3
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-09 Score=106.35 Aligned_cols=163 Identities=12% Similarity=0.044 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhhhcchhhhHhcHHHHH-HhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHhHHHHHH
Q 010323 287 LVMAILIPFFLQVTGINVIGFYAPVLF-RTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDK-LGRKVLFLVGGIQMLA 364 (513)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~ 364 (513)
.++..+...++...+++.+..+.+.++ +++|++..++. ..............+++|+++|| +|||+.+..+..+..+
T Consensus 22 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~-~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~i 100 (500)
T PRK09584 22 AFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSI-TLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAI 100 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 344555555556666677777777777 66899888776 55544444445555789999999 5999999999888888
Q ss_pred HHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChh--hhhhHhHHHHHHHHHHHHHHH
Q 010323 365 AQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLE--IRSAGQSINVAVGFLFTFLIA 442 (513)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~~~~~~~ 442 (513)
+..++.+.. +..+...+...+.+.+.+... +....+..|.+|++ .|+.+.++.+...++|..++|
T Consensus 101 g~~l~~~~~------------~~~~~l~~~~~l~gig~g~~~-~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp 167 (500)
T PRK09584 101 GYALVAWSG------------HDAGIVYMGMATIAVGNGLFK-ANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSM 167 (500)
T ss_pred HHHHHHHhc------------ccHHHHHHHHHHHHHhhhccc-CCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHH
Confidence 776665431 222333344455555555443 34445568988754 345678888999999999999
Q ss_pred HHhHHHHHhcchhhhHHHHHH
Q 010323 443 QTFLAMLCHFKAGIFFFFGGW 463 (513)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~ 463 (513)
.+.+++.++.++...+...++
T Consensus 168 ~i~g~l~~~~g~~~~F~i~~i 188 (500)
T PRK09584 168 LATPWLAAKYGWSVAFALSVV 188 (500)
T ss_pred HHHHHHHHhhCHHHHHHHHHH
Confidence 999999998887655444443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-09 Score=104.05 Aligned_cols=138 Identities=12% Similarity=-0.057 Sum_probs=113.0
Q ss_pred hhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCC
Q 010323 303 NVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGG 382 (513)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (513)
.......|.+.++++.+..+.+ ...+...++..++.++.|++.||+|||+.+..+..+..++.+...+.
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g-~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a---------- 94 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAA-LLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY---------- 94 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC----------
Confidence 4566778888899999999988 88888889999999999999999999999999999999999988765
Q ss_pred CCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhc-chhh
Q 010323 383 FSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHF-KAGI 456 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 456 (513)
++.+..+..-.+.+++.+...... ..++.+.+| ++|+.+.|........|..+++.+.+.+.++. ++..
T Consensus 95 ---~~~~~ll~~r~l~Gig~~~~~~~~-~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~ 164 (393)
T PRK09705 95 ---PQSALLLSSALLGGVGIGIIQAVM-PSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQ 164 (393)
T ss_pred ---cchHHHHHHHHHHHhHHHHHhhhh-hHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 455566667777777776654433 445578887 77999999999988899999999998888775 4543
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.8e-11 Score=108.79 Aligned_cols=183 Identities=15% Similarity=0.002 Sum_probs=142.7
Q ss_pred hHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHH
Q 010323 285 PQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLA 364 (513)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 364 (513)
......+++....+..--+.+....+..-+.++.++...+ ++...+.+...+++++.|++.||++||+++.++..+..+
T Consensus 32 ~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~G-ll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~ 110 (493)
T KOG1330|consen 32 TLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELG-LLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTL 110 (493)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhcc-chhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHH
Confidence 3345555555566655556666666666667888888888 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHH
Q 010323 365 AQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQT 444 (513)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~ 444 (513)
+.+...+. ...|.+.+.-.+.++|-+.. .|+...+++|.+|..+|++++++.+....+|..+|-..
T Consensus 111 Av~~~~fs-------------~~Fwq~~l~R~~vGiGeAs~-~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vv 176 (493)
T KOG1330|consen 111 AVFASGFS-------------NHFWQVLLCRGFVGIGEASY-SPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVV 176 (493)
T ss_pred HHHHHHHH-------------HHHHHHHHHHHHhccchhhh-cccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEe
Confidence 99888876 56788888888888887655 56667777999999999999999999999998887777
Q ss_pred hHHHHHhcc-hh-hhHHHHHHHHHHHHHHHhhcccCCCCC
Q 010323 445 FLAMLCHFK-AG-IFFFFGGWVVVMTTFVHFFLPETKNVP 482 (513)
Q Consensus 445 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (513)
...+.+..+ |. .+...+++..+++++..++.+|.+++.
T Consensus 177 gs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga 216 (493)
T KOG1330|consen 177 GSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGA 216 (493)
T ss_pred eeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccc
Confidence 666666655 43 345556666666777777777766543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-09 Score=106.04 Aligned_cols=150 Identities=13% Similarity=0.078 Sum_probs=112.4
Q ss_pred cccccchhHHHHHHH-HHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHh---hhc-hhHHHHHHHHHHHHhhh
Q 010323 73 NYCKFDSQLLTSFTS-SLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALG---GAA-LNIYMLIFGRVLLGVGI 147 (513)
Q Consensus 73 ~~~~~s~~~~~~~~s-~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l~Gi~~ 147 (513)
+++|.+..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.+.. +.. ++.+.+.+.-++..++.
T Consensus 251 ~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~ 330 (491)
T PRK11010 251 RGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCG 330 (491)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 345789999999974 5668999999999999999999998877666555544322 232 45555555566655555
Q ss_pred hhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCC
Q 010323 148 GFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPET 227 (513)
Q Consensus 148 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 227 (513)
|...+. ..++..+..+++.+++..++.+...++|..+++.+++.+.+. .||+..|.+.++.+++..+...+++++
T Consensus 331 g~~~~~--~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~---~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 331 GMGTAA--FVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA---HGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHH--HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555 666788899989999999999999999988888787777664 479999999888888776666655543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.4e-09 Score=104.47 Aligned_cols=174 Identities=13% Similarity=0.103 Sum_probs=124.6
Q ss_pred HHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHH
Q 010323 293 IPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSI 372 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 372 (513)
+.......+......-.+.++.+...++...+ +......+..++.++++|.++||++||++++.+-.+.++....+.+.
T Consensus 17 ~a~~iS~lG~~~~~va~~wlv~~lt~S~~~va-lv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l 95 (524)
T PF05977_consen 17 IAQLISNLGDWMQTVALAWLVTQLTGSPLMVA-LVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVL 95 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444445555556666666666 77777788888999999999999999999999888877666655544
Q ss_pred HHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhc
Q 010323 373 MENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHF 452 (513)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 452 (513)
... ...+.|..+.+.++.+++..+. .|...+++.|+.|+++...+.++.+...++...+||.+.|.+....
T Consensus 96 ~~~--------~~~~~~~Ll~~~fl~g~~~a~~-~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~ 166 (524)
T PF05977_consen 96 AFF--------GLLSPWLLLILTFLLGIGSAFF-NPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFF 166 (524)
T ss_pred HHh--------CcCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 322 2245666666667777665554 4665677789999999999999999999999999999999999988
Q ss_pred chhhhHHHHHHHHHHHHHHHhhcc
Q 010323 453 KAGIFFFFGGWVVVMTTFVHFFLP 476 (513)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~ 476 (513)
|....+.+-+++.+..+......+
T Consensus 167 G~~~~f~inalsfl~~i~~l~~~~ 190 (524)
T PF05977_consen 167 GAAAAFLINALSFLISILALLRWK 190 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 866655555555555555544443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=106.77 Aligned_cols=152 Identities=16% Similarity=0.174 Sum_probs=132.9
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhH--HHHHHHHHHHHHHHHHhhh--------chhHHHHHHHHH
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRR--ASILVGGAAFLAGSALGGA--------ALNIYMLIFGRV 141 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~ 141 (513)
++++|++..+...+.-+..+...+|++++|++.||+|.| ++++.++.++.+..+...+ .++-+.+.+.-+
T Consensus 309 ~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~ 388 (477)
T PF11700_consen 309 TEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAV 388 (477)
T ss_pred HHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHH
Confidence 556789999999999999999999999999999999999 8999998888666666555 678889999999
Q ss_pred HHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhh
Q 010323 142 LLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGA 221 (513)
Q Consensus 142 l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 221 (513)
+.|+..|...+. ..++.+|..|+++.+..+|++....-....+||++-+.+.+..+ +-|+.+....++.++.+++.
T Consensus 389 ~~G~~~G~~qs~--sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg--~~r~g~~~l~~lf~~gl~ll 464 (477)
T PF11700_consen 389 LIGLFMGGIQSA--SRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG--SQRYGFLFLLVLFLIGLILL 464 (477)
T ss_pred HHHHHhhhHHHH--HHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999999999999999888887654 47888888777777777766
Q ss_pred cccCCC
Q 010323 222 LFLPET 227 (513)
Q Consensus 222 ~~~~e~ 227 (513)
++++++
T Consensus 465 ~~v~~~ 470 (477)
T PF11700_consen 465 FFVDVE 470 (477)
T ss_pred hhccch
Confidence 666543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=95.45 Aligned_cols=154 Identities=17% Similarity=0.166 Sum_probs=117.2
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhc-------hhHHHHHHHH
Q 010323 68 DTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAA-------LNIYMLIFGR 140 (513)
Q Consensus 68 ~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~l~~~r 140 (513)
.|++++.+|+|.+|...+.+...+|..+ .++.|.+.|++|+|.++.+|.+...+|..+...+ .++|.+.+..
T Consensus 25 S~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~ 103 (250)
T PF06813_consen 25 SPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFL 103 (250)
T ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHH
Confidence 5667888999999999999999999987 4889999999999999999999999998877653 4678888888
Q ss_pred HHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHh
Q 010323 141 VLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLG 220 (513)
Q Consensus 141 ~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 220 (513)
++.|.+.+..... ......+.|| ++||++.|+.-...+++..+-..+...+... ..-+..+.+...+.++.++.
T Consensus 104 ~l~~~s~~~~~ta--~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~---~~~~fll~la~~~~~v~l~~ 177 (250)
T PF06813_consen 104 FLGGNSSCWFNTA--SLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD---DPSSFLLFLAVLPAVVCLVA 177 (250)
T ss_pred HHHcccHHHhhhH--HHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHHH
Confidence 8888887766555 5445557787 6899999999999999988877664444332 22444554454555555555
Q ss_pred hcccCCCh
Q 010323 221 ALFLPETP 228 (513)
Q Consensus 221 ~~~~~e~p 228 (513)
.+++++.|
T Consensus 178 ~~~vr~~~ 185 (250)
T PF06813_consen 178 MFFVRPVP 185 (250)
T ss_pred hhheeccC
Confidence 55655443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-09 Score=104.19 Aligned_cols=163 Identities=17% Similarity=0.142 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHH-----HHHHHHHHHHHHHhhhccCcchHHHHhH
Q 010323 285 PQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVT-----GGIGTLSTIISMILVDKLGRKVLFLVGG 359 (513)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 359 (513)
++.....++..++...-...+....|.+.++++.++.+......+.. .+...++.++.|++.||+|||+.+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 93 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTL 93 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHH
Confidence 33455566666666666777888899998999887765442322211 1222467889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCcchhH--------HHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHH
Q 010323 360 IQMLAAQVMIGSIMENQLGDQGGFSKGNAY--------LILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINV 431 (513)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 431 (513)
.+..++..+..+. ++.+ ..++.-++.+++.+..++.. ..++.|.+|+++|+++.++.+
T Consensus 94 ~~~~~~~~l~~~~-------------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~-~~~~~e~~p~~~rg~~~~~~~ 159 (434)
T PRK15075 94 SIMASGTLLIAFV-------------PGYATIGLAAPLLVLLGRLLQGFSAGVELGGV-SVYLAEIATPGRKGFYTSWQS 159 (434)
T ss_pred HHHHHHHHHHHhC-------------CcHHHHHHHHHHHHHHHHHHhhccccccHHHH-HHHHHhhCCcccchHHHHHHH
Confidence 8888887777654 1211 23444455555555444333 456689999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHH--------HhcchhhhHHHH
Q 010323 432 AVGFLFTFLIAQTFLAML--------CHFKAGIFFFFG 461 (513)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 461 (513)
...+++..+++.+.+.+. +..++...+.+.
T Consensus 160 ~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~ 197 (434)
T PRK15075 160 ASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIG 197 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHH
Confidence 888887777776666543 345666555443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.3e-09 Score=107.59 Aligned_cols=135 Identities=22% Similarity=0.121 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhH--HHHHHHHHHHHhhhhhhhhcccccceeeccC
Q 010323 87 SSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNI--YMLIFGRVLLGVGIGFANQASSVPLYLSEMA 164 (513)
Q Consensus 87 s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~ 164 (513)
....+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+..++. ...+..|.+
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~ 439 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQM--VYLYTAELY 439 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHH--HHHHhcccc
Confidence 34456677888999999999999999999999998888887776544 44555566677777777777 788999999
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCCh
Q 010323 165 PPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETP 228 (513)
Q Consensus 165 ~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 228 (513)
|++.|+.++++......+|.+++|.+.+ +.. .++...+++.++..++..+..+++||+.
T Consensus 440 p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 440 PTVVRNLGVGVCSTMARVGSIISPFLVY-LGE----KWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred cHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH----HHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 9999999999999999999999999977 332 3567788888887777777777889874
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.8e-09 Score=102.72 Aligned_cols=138 Identities=15% Similarity=0.094 Sum_probs=114.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcc
Q 010323 75 CKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQAS 154 (513)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~ 154 (513)
.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.+..+++++.+.+++..++.|++.+...+.
T Consensus 235 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~- 313 (382)
T PRK11128 235 AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLA- 313 (382)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-
Confidence 4678889999999999999999999999999999999999999999998888888999999999999999999988888
Q ss_pred cccceeeccCCCCCccchhhHHH-HHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHH
Q 010323 155 SVPLYLSEMAPPRHRGAFNIGYE-LCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTL 219 (513)
Q Consensus 155 ~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 219 (513)
...++.+. +++++++..+... ....+|..+||.+++.+.+.. |+ ..++..+++.++.++
T Consensus 314 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~---g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 314 -AMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL---GA-GVFWVMALVALPALF 373 (382)
T ss_pred -HHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cH-HHHHHHHHHHHHHHH
Confidence 78888886 5566788888876 556788899999999887653 45 456666655554443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.6e-09 Score=102.01 Aligned_cols=172 Identities=13% Similarity=0.070 Sum_probs=117.0
Q ss_pred HHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc-----Ccch-HHHHhHHHHHHHHH
Q 010323 294 PFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKL-----GRKV-LFLVGGIQMLAAQV 367 (513)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~-~~~~~~~~~~~~~~ 367 (513)
.++.+...+.....-+|.++++.|++.++.+ ........ .+..++.|+++||+ |||| ++..+....+++..
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig-~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~ 83 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTVEGLDIQTIG-FFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA 83 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence 3445556667778889999999999999998 55444333 58889999999999 7765 67776777766666
Q ss_pred HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHH
Q 010323 368 MIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLA 447 (513)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 447 (513)
.+.+.. +..+.+......++.+.+.. ...+....++.|..|+++|+++.++......+|..+++.+.+.
T Consensus 84 ~l~~~~----------~~~~~~~l~~~~~~~~~~~~-~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~ 152 (402)
T PRK11902 84 AMAFCP----------PHAALWPLAGLAVLVAFLSA-SQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALW 152 (402)
T ss_pred HHHhcC----------ccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 555431 11234444444344443333 3445556677899999999999999998889999999999888
Q ss_pred HHHhc-chhhhHHHHHHHHHHHHHHHhhcccCC
Q 010323 448 MLCHF-KAGIFFFFGGWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 448 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (513)
+.+.. ++...+.+.++..+...+..+..||++
T Consensus 153 l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~ 185 (402)
T PRK11902 153 LADRVLGWGNTYLLMAGLMLAGALTTLWAPEPE 185 (402)
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 88853 666555444443444444445556553
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-09 Score=101.61 Aligned_cols=153 Identities=14% Similarity=0.117 Sum_probs=118.1
Q ss_pred hhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhc
Q 010323 298 QVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQL 377 (513)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (513)
...+...+.+++--.+++.+..+...+ ........+.++.-++.+++.+|+|+-+++..++.+..+=.+.+..+
T Consensus 383 mG~g~~lv~tFLfWHled~~~~~~LfG-v~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L----- 456 (618)
T KOG3762|consen 383 MGAGVGLVFTFLFWHLEDLGGIKTLFG-VVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL----- 456 (618)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcceeee-ehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh-----
Confidence 333444555555455678776666656 77777788899999999999999999999999988888888777776
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHH-HHHHHHHHHHhHHHHHhcchhh
Q 010323 378 GDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVG-FLFTFLIAQTFLAMLCHFKAGI 456 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 456 (513)
+++|..+..-++-++..+..|..+ .++++...|++.+.++.|+..... .+|-.+|+.+.|.+.+.++...
T Consensus 457 --------~n~W~vLPieilqgit~aliWaa~-~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~t 527 (618)
T KOG3762|consen 457 --------QNPWMVLPIEILQGITHALIWAAI-ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGART 527 (618)
T ss_pred --------cCchheeeHHHHHHHHHHHHHHHH-HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHH
Confidence 788999888899999998888766 566689999999999999888754 5777788888888888887544
Q ss_pred -hHHHHHHHH
Q 010323 457 -FFFFGGWVV 465 (513)
Q Consensus 457 -~~~~~~~~~ 465 (513)
+.++++.++
T Consensus 528 tf~~~giAcl 537 (618)
T KOG3762|consen 528 TFRIFGIACL 537 (618)
T ss_pred HHHHHHHHHH
Confidence 333333333
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-08 Score=100.52 Aligned_cols=180 Identities=13% Similarity=0.026 Sum_probs=108.6
Q ss_pred HHHHhhhcchhhhHhcHHHHHHhcC---CCchhHH--HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHH
Q 010323 293 IPFFLQVTGINVIGFYAPVLFRTIK---LSESTSL--LMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQV 367 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 367 (513)
+.......-...+....|.+.++++ .+..+.. ........++..+++++.|+++||+|||+.+..+..+..++.+
T Consensus 29 ~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~ 108 (432)
T PRK10406 29 SGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSL 108 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3344444445556666777777764 3333221 1233444455669999999999999999999999999888888
Q ss_pred HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHH
Q 010323 368 MIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLA 447 (513)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 447 (513)
...+..... ..........++.-++.+++.+..+ +....++.|..|+++|+...++.+.....|..+++.+...
T Consensus 109 ~~~~~~~~~-----~~~~~~~~~l~~~R~l~G~g~g~~~-~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~ 182 (432)
T PRK10406 109 VIACLPGYE-----TIGTWAPALLLLARLFQGLSVGGEY-GTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVV 182 (432)
T ss_pred HHhhcCCch-----hHHHHHHHHHHHHHHHHHhhhhhhH-hhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776541000 0000112244555566666666554 4445677899999999999888777666666666655443
Q ss_pred HH--------HhcchhhhHHHHHHHHHHHHHHHhhcccC
Q 010323 448 ML--------CHFKAGIFFFFGGWVVVMTTFVHFFLPET 478 (513)
Q Consensus 448 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (513)
+. +..+|...+...++..+...+.....||.
T Consensus 183 ~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~ 221 (432)
T PRK10406 183 LQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDET 221 (432)
T ss_pred HHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 32 24566665555544444433333334443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-08 Score=100.34 Aligned_cols=167 Identities=13% Similarity=0.132 Sum_probs=113.1
Q ss_pred chhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCC
Q 010323 301 GINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQ 380 (513)
Q Consensus 301 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (513)
..+.+..+.+.+.+++|++..+.+ ....... ......++.|++.||+|+|+++.++.++..++.++.++.....
T Consensus 42 ~~y~fsv~s~~L~~~lgls~~~l~-~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~---- 115 (591)
T PTZ00207 42 FMYAFNLISGAMQARYNLTQRDLS-TITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV---- 115 (591)
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHH-HHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence 345667788888889999998877 5444433 3334566789999999999999999999999988877642100
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHH
Q 010323 381 GGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFF 460 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (513)
-..+.+...+..++.+.+.+...... ...+.+.+| +.||.+.|+......+|+++.+.+...+........+++.
T Consensus 116 ---i~~s~~~l~l~r~l~G~G~~~~~~~~-~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l 190 (591)
T PTZ00207 116 ---IEGSVVRLSVYNGLMTLGCMLFDLGA-VVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFL 190 (591)
T ss_pred ---ccCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 01345555556666666654443333 333467887 7899999999999999998766666655543333455556
Q ss_pred HHHHHHHHHHHHhhcccC
Q 010323 461 GGWVVVMTTFVHFFLPET 478 (513)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~ 478 (513)
+.+..+.+++...++++.
T Consensus 191 ~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 191 MSFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHHhheeCC
Confidence 666666666666655443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-09 Score=99.10 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=135.7
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFAN 151 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~ 151 (513)
.+++|++..+..++.....+..++|++++|++.||+|.|+++..+++++.+.++...+...-..+.+.-.+.|...|...
T Consensus 280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q 359 (438)
T COG2270 280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ 359 (438)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence 45789999999999999999999999999999999999999999999999999888888887888888889999999999
Q ss_pred hcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCC
Q 010323 152 QASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPET 227 (513)
Q Consensus 152 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 227 (513)
.. +-+|..+..|+++-++.+|++....-.+..+||.+-+.+.+..+ +-|..+....++.++.++..+.+|+.
T Consensus 360 A~--SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg--~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 360 AS--SRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG--SSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HH--HHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc--chhhHHHHHHHHHHhhHhhEEeecCC
Confidence 99 99999999999999999999999999999999999888887765 47777777777776666777777654
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.7e-09 Score=84.68 Aligned_cols=133 Identities=20% Similarity=0.192 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhcccccc
Q 010323 330 VTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPL 409 (513)
Q Consensus 330 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (513)
...++.+++.++.+++.||++||+.+..+.....++.+..... ++.+.......+.+.+.+... +.
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~-~~ 71 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------------SNITVLIIARFLQGFGAAFAL-VA 71 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHHHHH-Hh
Confidence 3456778889999999999999999988877777776655443 345555555666666655443 44
Q ss_pred ccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhh-hHHHHHHHHHHHHHHHhhcc
Q 010323 410 GFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGI-FFFFGGWVVVMTTFVHFFLP 476 (513)
Q Consensus 410 ~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 476 (513)
...+..|..|++.|+++.++.+....++..+++.+.+.+.+..++.. +........+..+...+..|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 72 GAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred HHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 45566899999999999999999999999999999999988777644 34444444444444444444
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-08 Score=96.53 Aligned_cols=149 Identities=13% Similarity=0.026 Sum_probs=113.2
Q ss_pred HHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHH
Q 010323 289 MAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVM 368 (513)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 368 (513)
....+.++.............|.+.++++.++.+.+ .......++..++.++.|++.||+|||+.+..+..+..++.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~g-l~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l 107 (438)
T PRK10133 29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 334444455455556777788988888999998888 8888999999999999999999999999999999998888876
Q ss_pred HHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHH
Q 010323 369 IGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAM 448 (513)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 448 (513)
+.... ..++.+..+...++.+.+.+........ ++.|..|++.|....++.+....+|..+++.+.+.+
T Consensus 108 ~~~~~----------~a~~~~~ll~~r~l~G~g~g~~~~~~~~-~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 108 FWPAA----------EIMNYTLFLVGLFIIAAGLGCLETAANP-FVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHH----------hcCCHHHHHHHHHHHHHHHHHHHhhHHH-HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53221 1145666677777777777766554433 346777777666678999999999999998887655
Q ss_pred H
Q 010323 449 L 449 (513)
Q Consensus 449 ~ 449 (513)
.
T Consensus 177 ~ 177 (438)
T PRK10133 177 I 177 (438)
T ss_pred H
Confidence 4
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-09 Score=95.90 Aligned_cols=142 Identities=16% Similarity=-0.027 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhh
Q 010323 324 LLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFA 403 (513)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (513)
++++.+.+++...+.++..|.++||+|||.++.++.+..++...+.+.. .+...++..-++.+..-
T Consensus 70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S-------------~~F~afv~aR~l~Gi~k- 135 (451)
T KOG2615|consen 70 AGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS-------------RNFAAFVLARFLGGIFK- 135 (451)
T ss_pred hhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhcc-
Confidence 3388888999999999999999999999999999998888866665553 33322222233444332
Q ss_pred ccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHH---hcchhhhHH---HHHHHHHH-HHHHHhhcc
Q 010323 404 VSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLC---HFKAGIFFF---FGGWVVVM-TTFVHFFLP 476 (513)
Q Consensus 404 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~-~~~~~~~~~ 476 (513)
.. -.+..++++|+++++.|+.+++.++....+|..+||.+.|++.. ..+...+.. +..+.... .....+++|
T Consensus 136 gn-l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lp 214 (451)
T KOG2615|consen 136 GN-LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLP 214 (451)
T ss_pred Cc-hHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCC
Confidence 22 24446777999999999999999999999999999999999887 334222222 11111222 334556788
Q ss_pred cCCC
Q 010323 477 ETKN 480 (513)
Q Consensus 477 ~~~~ 480 (513)
|+-.
T Consensus 215 ETL~ 218 (451)
T KOG2615|consen 215 ETLP 218 (451)
T ss_pred cccc
Confidence 8743
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.4e-09 Score=101.34 Aligned_cols=139 Identities=11% Similarity=0.139 Sum_probs=116.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccc
Q 010323 77 FDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSV 156 (513)
Q Consensus 77 ~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~ 156 (513)
.+..+.|.+.+...+...++.++.|++.||+|||+.+.++..+.+++..+...+++.+.+++.+++.|++....... .
T Consensus 251 ~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~--~ 328 (396)
T TIGR00882 251 QGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVG--C 328 (396)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH--H
Confidence 35667899999999999999999999999999999999999999988888788899999999999999988776655 6
Q ss_pred cceeeccCCCCCccchhhH-HHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHh
Q 010323 157 PLYLSEMAPPRHRGAFNIG-YELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLG 220 (513)
Q Consensus 157 ~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 220 (513)
..++.+..+++.++...+. .+....+|..+++.+++.+.+. .||+..|.+.++..++..+.
T Consensus 329 ~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~---~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 329 FKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS---IGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh---cccHHHHHHHHHHHHHHHHH
Confidence 6677777887878776665 6788899999999998888765 47999999988877665543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-08 Score=96.48 Aligned_cols=135 Identities=13% Similarity=0.050 Sum_probs=102.3
Q ss_pred hhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCC
Q 010323 302 INVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQG 381 (513)
Q Consensus 302 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (513)
+.......|.+.+++|.+..+.+ .......++..++.++.|++.||+|||+.+..+..+..++.+.. ..
T Consensus 16 ~~~~~~~lp~l~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~--------- 84 (355)
T TIGR00896 16 LTSVGPLLPQIRSALGMSFSVAG-LLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA--------- 84 (355)
T ss_pred cccCcccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh---------
Confidence 34456678889999999999988 88889999999999999999999999999988877766655443 21
Q ss_pred CCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc
Q 010323 382 GFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK 453 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (513)
++.+..+...++.+++.+...... ..++.|.+| ++|+++.++.+....+|..+++.+.+.+.+..+
T Consensus 85 ----~~~~~l~~~~~~~g~g~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~ 150 (355)
T TIGR00896 85 ----PGTALLFAGTALIGVGIAIINVLL-PSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG 150 (355)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHhccc-hHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444555555565555443333 334467776 689999999999999999999999888877653
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-08 Score=97.05 Aligned_cols=144 Identities=17% Similarity=0.126 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhcc
Q 010323 326 MSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVS 405 (513)
Q Consensus 326 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (513)
.....+.+++++|+++.++++||+|||..+.+..+...++.++....... +.....++.-++.+...+..
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~----------~~~e~li~GR~i~Gl~~gl~ 133 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA----------PSFEMLILGRLIVGLACGLS 133 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHhHHH
Confidence 45667778999999999999999999999998888888777777665422 55667777778888777766
Q ss_pred ccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHh-HHHHHhcc-hhhhHHHHHHHHHHHHHHHhhcccCCC
Q 010323 406 WGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTF-LAMLCHFK-AGIFFFFGGWVVVMTTFVHFFLPETKN 480 (513)
Q Consensus 406 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (513)
.... ..+..|+.|.+.||....+......+|..++..+. ..+.++.. |...+.+..+..+...+...+.||..+
T Consensus 134 ~~~~-pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk 209 (485)
T KOG0569|consen 134 TGLV-PMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPK 209 (485)
T ss_pred HHHH-HHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 5444 45568999999999998888888888777774433 33333332 555555666666777777788898765
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-08 Score=99.09 Aligned_cols=141 Identities=14% Similarity=0.016 Sum_probs=105.8
Q ss_pred cccchhHHHHHHHHHHH-HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhh------chhHHHHHHHHHHHHhhh
Q 010323 75 CKFDSQLLTSFTSSLYI-AGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGA------ALNIYMLIFGRVLLGVGI 147 (513)
Q Consensus 75 ~~~s~~~~~~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~l~~~r~l~Gi~~ 147 (513)
.|+++++.|++...... ...++.++.|++.||+|+|+.+..+..+.++..+.... .++...+.....+.+++.
T Consensus 238 ~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (390)
T TIGR02718 238 AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLIT 317 (390)
T ss_pred cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHH
Confidence 57899999999888764 66778899999999999999998877665333332221 223344455556666666
Q ss_pred hhhhhcccccceeeccCCC-CCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHh
Q 010323 148 GFANQASSVPLYLSEMAPP-RHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLG 220 (513)
Q Consensus 148 ~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 220 (513)
+...+. ..+...+..++ +++++.++..+...++|..++|.+++.+.+. .||+..|++.+++.++..+.
T Consensus 318 g~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~---~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 318 GITSVA--IYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR---FGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHH--HHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccHHHHHHHHHHHHHHHHH
Confidence 766666 66666677765 7889999999999999999999999988764 46899998887776665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.2e-09 Score=105.86 Aligned_cols=156 Identities=14% Similarity=-0.055 Sum_probs=113.9
Q ss_pred HHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHH
Q 010323 294 PFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIM 373 (513)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 373 (513)
..+.+...........+.+.++++++..+.+ .+.+...++..++.++.+++.||.+||+++.++.++++++.++..+..
T Consensus 41 ~~~~~~~~~g~~~~~l~~iek~F~lss~~~G-~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alph 119 (633)
T TIGR00805 41 AQLQGLLYNGLVNSSLTTIERRFKLSTSSSG-LINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPH 119 (633)
T ss_pred HHHHHHHHHHHHHhhchhhhhhhCCCCCcce-eeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChH
Confidence 3444443344555666777788999999888 888889999999999999999999999999999999999888876542
Q ss_pred HhhcCC--C-------------------C---C----------C-C---cchhHHHHHHHHHHHHhhhccccccccceec
Q 010323 374 ENQLGD--Q-------------------G---G----------F-S---KGNAYLILVLICVYVAGFAVSWGPLGFLVPS 415 (513)
Q Consensus 374 ~~~~~~--~-------------------~---~----------~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (513)
...-.. . . . . . ......+++.-++.+++.+..+ ++...++.
T Consensus 120 f~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~-~~~~~~i~ 198 (633)
T TIGR00805 120 FLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIF-PLGISYID 198 (633)
T ss_pred HhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcch-hcCchhhh
Confidence 110000 0 0 0 0 0 0012344456666666655443 55567779
Q ss_pred ccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHh
Q 010323 416 EIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCH 451 (513)
Q Consensus 416 ~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 451 (513)
|.+|++.|+...|+.+....+|..+++.+.+.+.+.
T Consensus 199 d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 199 DFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred ccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 999999999999999999999999999999888764
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.7e-08 Score=97.04 Aligned_cols=118 Identities=21% Similarity=0.236 Sum_probs=98.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHhhhhhhhhcccc
Q 010323 78 DSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAA-LNIYMLIFGRVLLGVGIGFANQASSV 156 (513)
Q Consensus 78 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~Gi~~~~~~~~~~~ 156 (513)
+..+.+++.+...++..++.+++++++||+|+|+++..+..+.+++.++..+. ++.+.+++..++.|++.+...+. .
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~ 332 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGL--V 332 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHH--H
Confidence 45567788888899999999999999999999999999998888887777665 46677778888899999888887 7
Q ss_pred cceeeccCC-------CCCccchhhHHHHHHHHHHHHHHHHHhhhccc
Q 010323 157 PLYLSEMAP-------PRHRGAFNIGYELCTAIGILAASLINYGTQKI 197 (513)
Q Consensus 157 ~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~ 197 (513)
.++++|..+ ++++|.+.++.+....+|..+++.+.+.+.+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 333 WALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI 380 (437)
T ss_pred HHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888765 45678999999999999999999988877543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.8e-08 Score=108.82 Aligned_cols=144 Identities=13% Similarity=0.062 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHH--HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHH
Q 010323 322 TSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQ--VMIGSIMENQLGDQGGFSKGNAYLILVLICVYV 399 (513)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (513)
...++......+..++.+++.|+++||++||+++.....+..+.. ..+.+.. .+.+..+++.++.+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~------------~s~~~l~~~~~l~g 119 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL------------NSVPLLFAALFLMG 119 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHH
Confidence 333366777788889999999999999999997643222222211 1211111 45666677777777
Q ss_pred HhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHHHHHHHHHHHhhcccC
Q 010323 400 AGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPET 478 (513)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (513)
.+.+.. .|....++.+.+|++.++.++|+.++...+|..++|.+.|.+.+..++...++..++..+.+++..+.+++.
T Consensus 120 i~~a~~-~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 120 IHSALF-GPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred HHHHhh-chHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 766655 455567778999999999999999999999999999999999998887666655555555555555666654
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.1e-08 Score=94.57 Aligned_cols=162 Identities=18% Similarity=0.147 Sum_probs=105.9
Q ss_pred hhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CcchHH-HHhHHHHHHHHHHHHHHHHhh
Q 010323 303 NVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKL-----GRKVLF-LVGGIQMLAAQVMIGSIMENQ 376 (513)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~-~~~~~~~~~~~~~~~~~~~~~ 376 (513)
.......|.+.++.|++..+.+ ..... .+...+ .++.|+++||+ ||||.+ ..+.+..++....+.+..
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g-~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~--- 78 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIG-FFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV--- 78 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHH-HHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC---
Confidence 3455677888999999999888 55433 333333 88999999998 788864 455555555544444321
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc---
Q 010323 377 LGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK--- 453 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--- 453 (513)
+..+.+.......+.+.+.... .+....++.|.+|+++|+.+.|+......+|..+++.+.+.+.+..+
T Consensus 79 -------~~~~l~~l~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~ 150 (356)
T TIGR00901 79 -------PSTDLPLLAGLAFLIAFFSATQ-DIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANT 150 (356)
T ss_pred -------cchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 1123333333333443333322 34445666899999999999999999999999999999998888777
Q ss_pred -----hhhhHHHHHHHHHHHHHHHh-hcccC
Q 010323 454 -----AGIFFFFGGWVVVMTTFVHF-FLPET 478 (513)
Q Consensus 454 -----~~~~~~~~~~~~~~~~~~~~-~~~~~ 478 (513)
+...+...++..+...+..+ ..||+
T Consensus 151 ~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 151 GLITLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 66555555555554444433 34554
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.1e-06 Score=79.95 Aligned_cols=337 Identities=15% Similarity=0.046 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhc--------h-----h--HHHHHHHHHHHHhhhhhhhh
Q 010323 88 SLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAA--------L-----N--IYMLIFGRVLLGVGIGFANQ 152 (513)
Q Consensus 88 ~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------~-----~--~~~l~~~r~l~Gi~~~~~~~ 152 (513)
.-.+..++.++..|.+.||..|.++...+.+..-++..++... + + ...+++.-.+.|.-.-....
T Consensus 46 ~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~ 125 (432)
T PF06963_consen 46 VRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASI 125 (432)
T ss_pred HHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 3445567788889999999999998877765554433322211 1 1 12222222222221121111
Q ss_pred cccccceeeccCC------CCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhh-ccc-
Q 010323 153 ASSVPLYLSEMAP------PRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGA-LFL- 224 (513)
Q Consensus 153 ~~~~~~~i~~~~~------~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~- 224 (513)
. ...+.=.||.. ++.+.+.++...-.--+.-+++|++.+.+... .+.+....+.+...++....= +++
T Consensus 126 ~-~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~---~s~~~~~~~i~~~N~~S~~vEy~~l~ 201 (432)
T PF06963_consen 126 A-NTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTF---ASPVIAAIFIAGWNLASVFVEYFLLA 201 (432)
T ss_pred h-hhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 02233346642 34445667777767777888999887777654 357777766666666544331 111
Q ss_pred ---CCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcc
Q 010323 225 ---PETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTG 301 (513)
Q Consensus 225 ---~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (513)
...|. +..++++.++....... ...+.+.+....+...+.-++....|+..++. +.+...+...+.++..
T Consensus 202 ~VY~~~P~-L~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q----~vflas~alalLY~TV 274 (432)
T PF06963_consen 202 RVYNSVPA-LAVKKRSSESESSSDEE--SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQ----PVFLASFALALLYFTV 274 (432)
T ss_pred HHHHhChH-hcCCCCCcccccccccc--ccccccchhhHHHHHHHHHHHHhccHHHHHhC----HHHHHHHHHHHHHHHH
Confidence 22232 21121111110000000 00000000011111111112223445554443 3333333333333322
Q ss_pred hhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCC
Q 010323 302 INVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQG 381 (513)
Q Consensus 302 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (513)
-.+...+..|+...|+++...+ ..-....+.++.+.+...++.+|+|..|.-..+......++.+........ .+
T Consensus 275 -Lsf~~lmt~yl~~~G~s~~~ig-i~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~--~~- 349 (432)
T PF06963_consen 275 -LSFGGLMTAYLKSQGYSPSVIG-IFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAP--GS- 349 (432)
T ss_pred -hcCcHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcC--CC-
Confidence 2234455666777799999888 778888899999999999999999988887777666555544433322211 00
Q ss_pred CCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHH
Q 010323 382 GFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLI 441 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~ 441 (513)
+.+..+....+...++.-+|.-. +-.....+.+|..|+++||+..|+-+...++...+.
T Consensus 350 ~~~~~s~~~l~~gi~~SR~GLW~-fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~ 408 (432)
T PF06963_consen 350 PFSSISAYLLLGGIALSRIGLWS-FDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLS 408 (432)
T ss_pred CchhhHHHHHHHHHHHHHHHHHh-hhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence 00112333444444444444432 233335556899999999999999998888766543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-07 Score=87.67 Aligned_cols=327 Identities=17% Similarity=0.117 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeec
Q 010323 83 TSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSE 162 (513)
Q Consensus 83 ~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~ 162 (513)
+.+.-+-.+...+.-+.+.+..+|+..+.=...+.++..++.++.+++++.+.-+++-.+.+++.|..... ...+ +.
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~t--fL~l-t~ 138 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVT--FLSL-TH 138 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHH--HHHH-HH
Confidence 44444555566667777788889887665566677788899999999999999999999999998887776 5554 34
Q ss_pred cCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcc-cCCChHHHHHhCCc-HHH
Q 010323 163 MAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALF-LPETPNSIIQRSND-LQR 240 (513)
Q Consensus 163 ~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~-~~~ 240 (513)
.+++ ...+.+..+.+.+.++|+..-..+.. .+ .+-|..+++..++.++..+..++ +|.++.....++.+ .++
T Consensus 139 ~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g-~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~ 212 (402)
T PF02487_consen 139 FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LG-LSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDE 212 (402)
T ss_pred hcCc----cccccccCCcChhhHHHHHHHHHHHH-hC-cCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCCc
Confidence 5553 45788888888888888877655555 22 45677777777666555555444 44332110000000 000
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhh-HhcHHHHH-HhcCC
Q 010323 241 AKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVI-GFYAPVLF-RTIKL 318 (513)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~g~ 318 (513)
++ ++..++...+.+.+...+.++++-++ ..++.++ ..+..+......+.+ .-..+... .....
T Consensus 213 ~~------------~~~~~~~~~~~~~~~~~~~~~~~k~~--~~k~Ll~-ymiPL~lVY~aEY~InqGv~~tl~fp~~~~ 277 (402)
T PF02487_consen 213 AE------------DDLLESETSESKPDSSSKLSFKEKLK--RLKPLLW-YMIPLFLVYFAEYFINQGVAPTLLFPNSFF 277 (402)
T ss_pred cc------------ccccccccccccccccchhhHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHhchHHHhcCCccCC
Confidence 00 00000000000000111112222221 1122222 222222222222222 11222221 12222
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHH--HHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHH
Q 010323 319 SESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGI--QMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLIC 396 (513)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (513)
+.....-.....+.++.++++--... +.-|++.+...+ +..+..++-.+... -++.|..++.++
T Consensus 278 ~~r~~Y~~Y~~~YQ~GVFISRSS~~~----~rir~lwils~LQ~~nl~~~~l~s~~~f----------ipsi~ivf~lif 343 (402)
T PF02487_consen 278 SPRDQYRWYQLLYQLGVFISRSSLPF----FRIRRLWILSLLQVINLVFLLLQSWYRF----------IPSIWIVFVLIF 343 (402)
T ss_pred CHHHHHHHHHHHHHHHHhhhhcceee----eehhhHHHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHH
Confidence 22222224555666666665543222 222333332222 22222221112111 145677777777
Q ss_pred HHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHH
Q 010323 397 VYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAM 448 (513)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 448 (513)
.-|...+..+......+ .|-.|+++|..++|.....-.+|..++..+.-.+
T Consensus 344 ~eGLlGGa~YVNtF~~I-~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 344 YEGLLGGASYVNTFYRI-SEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHhhhHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777777776665555 5777899999999999988888777766654433
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.7e-08 Score=93.77 Aligned_cols=191 Identities=12% Similarity=0.026 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh----ccCcchHHHHh-HH
Q 010323 286 QLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVD----KLGRKVLFLVG-GI 360 (513)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~-~~ 360 (513)
+.+.........++ ++.....+.+.|+++.|.+....+ .......+...+..++.|+++| |+|||+.++.. ..
T Consensus 5 ~li~~~~~~~Giq~-~~~l~~~~l~~yl~~lg~~~~~~~-~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~ 82 (477)
T TIGR01301 5 KLLRVASVAAGVQF-GWALQLSLLTPYVQELGIPHAWAS-IIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAA 82 (477)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHH
Confidence 34444444444443 355666677778899999988888 8888888999999999999999 59999998775 44
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcc-h---hHHHHHHHHHHHHhhhccccccccceecccCChhhh--hhHhHHHHHHH
Q 010323 361 QMLAAQVMIGSIMENQLGDQGGFSKG-N---AYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIR--SAGQSINVAVG 434 (513)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~ 434 (513)
...++..++.+.......-.+..+.. . .+..+....+..++.+....|. .++++|..|+++| +.+.++.+...
T Consensus 83 ~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~ 161 (477)
T TIGR01301 83 LVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFM 161 (477)
T ss_pred HHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHH
Confidence 44444444443211000000000000 0 1233333344444555555555 4566899998865 57899999999
Q ss_pred HHHHHHHHHHhHHH--HHhc-------------chh-hhHHHHHHHHHHHHHHHhhcccCC
Q 010323 435 FLFTFLIAQTFLAM--LCHF-------------KAG-IFFFFGGWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 435 ~~~~~~~~~~~~~~--~~~~-------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 479 (513)
.+|+.+++.+.+.. .+.. +.. .|.+.+++..+..++..+..+|.+
T Consensus 162 ~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 162 AIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 99999988887754 2211 111 344444445555555566667654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.1e-09 Score=114.05 Aligned_cols=139 Identities=14% Similarity=0.093 Sum_probs=117.5
Q ss_pred cccccchh-HHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 010323 73 NYCKFDSQ-LLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFAN 151 (513)
Q Consensus 73 ~~~~~s~~-~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~ 151 (513)
+.+|.+.. +.+++.+...++..++.+++|+++||+++|+++.++.++.+++.++..+..+.+.+++..++.|++.+...
T Consensus 261 ~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 340 (1146)
T PRK08633 261 EVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFI 340 (1146)
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 34566788 99999999999999999999999999999999999988888888888888899989899999999999888
Q ss_pred hcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHH
Q 010323 152 QASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPAL 215 (513)
Q Consensus 152 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~ 215 (513)
+. ..+++.+..|+++|++++++.+....+|..+++.+++.+... ..++...+++.+.+.+
T Consensus 341 ~~--~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 341 VP--LNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGL--GLSPAGLFYLIALVTL 400 (1146)
T ss_pred HH--HHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHH
Confidence 88 888999999999999999999999999998888887766442 1356666666555443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.3e-07 Score=92.71 Aligned_cols=147 Identities=15% Similarity=0.186 Sum_probs=116.2
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhHHHhhh-hhhHHHHHHHHHHHHHHHHHhhhchh--------HHHHHHHHHHH
Q 010323 73 NYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRA-FGRRASILVGGAAFLAGSALGGAALN--------IYMLIFGRVLL 143 (513)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~ 143 (513)
+.+|++.+....+...+....-+..+++|.++|+ +||++.+.++.++..++.++.+++.. ....+++-.+.
T Consensus 16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLi 95 (654)
T TIGR00926 16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALI 95 (654)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHH
Confidence 3457788888889998888888999999999996 69999999999999999888776421 23456677788
Q ss_pred HhhhhhhhhcccccceeeccCCCCC---ccchhhHHHHHHHHHHHHHHHHHhhhcccC----CccchHHHHHhhHHHHHH
Q 010323 144 GVGIGFANQASSVPLYLSEMAPPRH---RGAFNIGYELCTAIGILAASLINYGTQKIK----GGWGWRISLAMAAAPALI 216 (513)
Q Consensus 144 Gi~~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~----~~~~wr~~f~~~~~~~~~ 216 (513)
.+|.|++-+. ..+...|.+++++ |-....++..+.++|..+++.+...+.... ...+|...|.+.++..++
T Consensus 96 a~G~GgiKp~--vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~i 173 (654)
T TIGR00926 96 ALGTGGIKPC--VSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMIL 173 (654)
T ss_pred HhhccccccC--chhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHH
Confidence 8889999888 8899999987543 556888888899999999988876665321 234699999998887776
Q ss_pred HHHhh
Q 010323 217 LTLGA 221 (513)
Q Consensus 217 ~~~~~ 221 (513)
.+++.
T Consensus 174 a~lvf 178 (654)
T TIGR00926 174 ALIVF 178 (654)
T ss_pred HHHHH
Confidence 65543
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-08 Score=89.24 Aligned_cols=342 Identities=11% Similarity=0.074 Sum_probs=208.4
Q ss_pred ccchhHHH-HHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcc
Q 010323 76 KFDSQLLT-SFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQAS 154 (513)
Q Consensus 76 ~~s~~~~~-~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~ 154 (513)
|++..+.. -+.=...-.+.+.-.+.=.+.|-.-.|+++++-.+.......+..+.++.+.+=+.-++.|...+... +
T Consensus 37 NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEI-A- 114 (433)
T KOG3810|consen 37 NLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEI-A- 114 (433)
T ss_pred CccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHH-h-
Confidence 44544433 22233334456666677778999988999988877777888888899999999999999999877654 4
Q ss_pred cccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCCChHHHHHh
Q 010323 155 SVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPETPNSIIQR 234 (513)
Q Consensus 155 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~ 234 (513)
-++|+-+..+|+++.++.+...+..-.|-..|..++-.+..... .+....-.+...-..+..+..+++|..+|....+
T Consensus 115 -YysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~-~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~ 192 (433)
T KOG3810|consen 115 -YYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLET-LSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFH 192 (433)
T ss_pred -hhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcc-cchhhhchhhHHHHHHHHHHHhhCCCCchhhhhh
Confidence 67899999999999999999999999999888888877765433 3455555555555555666677788776554443
Q ss_pred CCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHH
Q 010323 235 SNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFR 314 (513)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (513)
.++.+......+.... ..+..+.. +.....+.+-++.-.+++.+....+......++++.+..|...+.+
T Consensus 193 ~~~~~~~v~~~e~~~~----~~~~~~~l------~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~ 262 (433)
T KOG3810|consen 193 RLEDKISVGDLEEMNP----QASYMSYL------RGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWK 262 (433)
T ss_pred cccccceeccchhcCc----cchhhHHH------HHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHH
Confidence 3311111000000000 00000000 0000111111222334455566667777777888888888888877
Q ss_pred hcC-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHH
Q 010323 315 TIK-LSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILV 393 (513)
Q Consensus 315 ~~g-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (513)
+.. -+.....+..=....+.+.++.++.|.+.-++.|..-++++......+.+++... ...+.|...+
T Consensus 263 ~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~-----------~t~~Iw~~Ya 331 (433)
T KOG3810|consen 263 EVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA-----------QTQHIWVCYA 331 (433)
T ss_pred hhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh-----------cccceehhhh
Confidence 753 2222222234445556677788888888666666533333322222222222211 2266888888
Q ss_pred HHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHH
Q 010323 394 LICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQ 443 (513)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 443 (513)
...++...+..........+ ++....+.-|...|++.++.-+-..+...
T Consensus 332 ~yvlfr~~y~l~itiA~~~i-A~nL~~e~~gLvFGiNTFvAl~lQsilT~ 380 (433)
T KOG3810|consen 332 GYVLFRVIYQLTITIATFQI-ARNLSSELFGLVFGINTFVALILQSILTL 380 (433)
T ss_pred hHHHHHhhHhhhhhHHHHHH-HHhhhhhhheeeeehHHHHHHHHHHhheE
Confidence 88888877776654443344 56566677888899888776665544433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.3e-08 Score=94.99 Aligned_cols=151 Identities=19% Similarity=0.119 Sum_probs=122.9
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHH
Q 010323 315 TIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVL 394 (513)
Q Consensus 315 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (513)
++.++..+.+ .+......+.+++.+.++++.||+|.|+++..+.++.++..++..+... ...+..++.
T Consensus 67 ~~~ws~~~k~-~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-----------~~~~~~~~~ 134 (466)
T KOG2532|consen 67 EYDWSSTEKG-LIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-----------IGFYLLLVL 134 (466)
T ss_pred eecCCHHHHH-HHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-----------hcchhhHHH
Confidence 3566777778 8888889999999999999999999999999999999999998888742 344566788
Q ss_pred HHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHh-cchh-hhHHHHHHHHHHHHHHH
Q 010323 395 ICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCH-FKAG-IFFFFGGWVVVMTTFVH 472 (513)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~ 472 (513)
-++.|++.+..++.+ ..+.++-.|+++|++..++.....++|..++-++.|.+.+. .||. .+++.+++..+..++.+
T Consensus 135 R~lqGl~~g~~~pa~-~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~ 213 (466)
T KOG2532|consen 135 RFLQGLGQGVLFPAI-GSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWF 213 (466)
T ss_pred HHHhHHHHhHHHhhh-hceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHH
Confidence 888888888887655 55558999999999999999999999999999999999998 7754 56666666666666555
Q ss_pred hhcccC
Q 010323 473 FFLPET 478 (513)
Q Consensus 473 ~~~~~~ 478 (513)
++..+.
T Consensus 214 ~~~~d~ 219 (466)
T KOG2532|consen 214 LFYSDS 219 (466)
T ss_pred HHhcCC
Confidence 555443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.4e-08 Score=95.03 Aligned_cols=121 Identities=8% Similarity=0.021 Sum_probs=96.2
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhch--hHHHHHHHHHHHHhhhhhhh
Q 010323 74 YCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAAL--NIYMLIFGRVLLGVGIGFAN 151 (513)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~Gi~~~~~~ 151 (513)
.+|.+....++......++..++.++++++.||+|+|+++.++.++..++.++..+.+ +++.+++..++.|+|.+...
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~ 337 (448)
T PRK09848 258 VLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTM 337 (448)
T ss_pred ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555677888999999999999999999999998888877776653 66777777888999999998
Q ss_pred hcccccceeeccCCCC-------CccchhhHHHHHHHHHHHHHHHHHhhhcc
Q 010323 152 QASSVPLYLSEMAPPR-------HRGAFNIGYELCTAIGILAASLINYGTQK 196 (513)
Q Consensus 152 ~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~l~~~~~~ 196 (513)
+. ..++.+|..+++ ++|...+..+....+|..+++.+.+.+..
T Consensus 338 ~~--~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 338 TV--MWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred HH--HHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 888888887643 35888999999999999999888766543
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.4e-08 Score=83.90 Aligned_cols=170 Identities=15% Similarity=0.153 Sum_probs=116.3
Q ss_pred hhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhh
Q 010323 297 LQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQ 376 (513)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (513)
...+..+.+..|.|.+-++.|++.++.. .+.....++..+ .++.|.+.|++|.+..+.++.....++...+.......
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~-~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~ 90 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLGYSQSQLN-TLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGR 90 (250)
T ss_pred HhcCcccchhhhhHHHHHHhCCCHHHHH-HHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3444567888999999999999999988 777777777765 58889999999999999999999999998887664221
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhh
Q 010323 377 LGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGI 456 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (513)
.+..+.|......++.+.+.... .........+.+| ++||++.|+.-....+++++...+...+.+......
T Consensus 91 ------i~~~~~~~~~~~~~l~~~s~~~~-~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~f 162 (250)
T PF06813_consen 91 ------IPSLPVWLMCLFLFLGGNSSCWF-NTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSF 162 (250)
T ss_pred ------cCccchHHHHHHHHHHcccHHHh-hhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHH
Confidence 11123344433333333322221 1221222347788 689999999999999999998888887776644444
Q ss_pred hHHHHHHHHHHHHHHHhhcc
Q 010323 457 FFFFGGWVVVMTTFVHFFLP 476 (513)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~ 476 (513)
..+.+....+++++...+++
T Consensus 163 ll~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 163 LLFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred HHHHHHHHHHHHHHHhhhee
Confidence 45555555555555544444
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.8e-08 Score=90.39 Aligned_cols=145 Identities=16% Similarity=0.189 Sum_probs=121.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhccccc
Q 010323 78 DSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVP 157 (513)
Q Consensus 78 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~ 157 (513)
++...|.+.+...+.-++.-.+..++.+|+|.|+.++++..+..+=-.+++++++.+.+.+.+.+.|+-.+..... ..
T Consensus 257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva--~f 334 (412)
T PF01306_consen 257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVA--AF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH--HH
Confidence 5677999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred ceeeccCCCCCccchhhH-HHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcc-cCCC
Q 010323 158 LYLSEMAPPRHRGAFNIG-YELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALF-LPET 227 (513)
Q Consensus 158 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~ 227 (513)
.|+++.+|+|-.++...+ .+.+.++|..+.+.+++.+.+. .|.+..|++.+.+.++..++..+ ++++
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~---~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR---IGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh---cCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 999999998777666666 4678889999999888887664 57899999988887776665554 5543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.82 E-value=9e-08 Score=88.84 Aligned_cols=131 Identities=9% Similarity=0.023 Sum_probs=102.3
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhc
Q 010323 74 YCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQA 153 (513)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~ 153 (513)
.+|+++.+.++..+.+..+..++.++.+++.||+|+||.+.++..+..++.++....++...+ ..-++.|++.+..+|.
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPT 250 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999988888888877666655544333 3555789999999998
Q ss_pred ccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHH
Q 010323 154 SSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAA 212 (513)
Q Consensus 154 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~ 212 (513)
..+...+..|+ +.+.+.++. ....+|..+.|.+.+.+.+. .|.+..|++..+
T Consensus 251 --~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~---~g~~~a~~v~~~ 302 (310)
T TIGR01272 251 --IFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADC---LGIQLAFALPVP 302 (310)
T ss_pred --HHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHh---ccchHHHHHHHH
Confidence 88888888774 445666665 55668999999887776654 457777764433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-05 Score=76.36 Aligned_cols=260 Identities=10% Similarity=0.068 Sum_probs=144.5
Q ss_pred chhHHHHHHHHHHHHHHHH-HHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhc----h---------------------
Q 010323 78 DSQLLTSFTSSLYIAGLIA-SLFASSVTRAFGRRASILVGGAAFLAGSALGGAA----L--------------------- 131 (513)
Q Consensus 78 s~~~~~~~~s~~~l~~~i~-~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~--------------------- 131 (513)
+...+.++-+...+..++. .++.+++++|++|++.+-+....+.....++++. +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 4467889998888877766 8999999999999999888777666666655554 1
Q ss_pred ------hHHHHHHHHHHHHhhhhhhhh-cccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccC-----C
Q 010323 132 ------NIYMLIFGRVLLGVGIGFANQ-ASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIK-----G 199 (513)
Q Consensus 132 ------~~~~l~~~r~l~Gi~~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~-----~ 199 (513)
+.|...+.-+...+-...... . .-.+..|.++.+|-.|..++++.+.++|.++++.+...+.+.. +
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~l--FW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~ 198 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLL--FWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPG 198 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 123333333344443333332 3 4567899999999999999999999999999998877765321 1
Q ss_pred ccchH----HHHHhhHHHHHHHHHhhcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcc
Q 010323 200 GWGWR----ISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPF 275 (513)
Q Consensus 200 ~~~wr----~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (513)
...|. ..+.+.++.+++...+.+++.+.. ..+.+ . .+.+ +.+++++++.+.
T Consensus 199 ~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~---~~~~~-~---------------~~~~------~~~~k~k~k~~~ 253 (472)
T TIGR00769 199 VDGWHVSLKNLMVIVICSGLAIILLYWWVNRNV---LTDPR-S---------------YNPA------LKEKKVKPKMST 253 (472)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCcc-c---------------cchh------hccccCCCCCCH
Confidence 12352 233333333333333333332110 00000 0 0000 011222234455
Q ss_pred hhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHH---HHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 010323 276 KKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSL---LMSAVVTGGIGTLSTIISMILVDKLGRK 352 (513)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 352 (513)
.+-++...+.|.+..+.+...+.......+..-.-...++..-++.+.. +......++..++..++.+++.+|+|-+
T Consensus 254 ~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~ 333 (472)
T TIGR00769 254 MESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWL 333 (472)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 5555544555555555555544433333333222222333333332221 1334444555566667778999999988
Q ss_pred hHHHHhHHHHHH
Q 010323 353 VLFLVGGIQMLA 364 (513)
Q Consensus 353 ~~~~~~~~~~~~ 364 (513)
....+.-++..+
T Consensus 334 ~~a~i~Pii~li 345 (472)
T TIGR00769 334 TAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHH
Confidence 766555444444
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.1e-08 Score=92.65 Aligned_cols=134 Identities=29% Similarity=0.391 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchh--HHHHHHHHHHHHhhhhhhhhccccc
Q 010323 80 QLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALN--IYMLIFGRVLLGVGIGFANQASSVP 157 (513)
Q Consensus 80 ~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~Gi~~~~~~~~~~~~ 157 (513)
...++..+.+.++..++.++.|.++||+|||+.+..+.....++.+.+++..+ .+.+++.|+++|++.+...+. ..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~ 116 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPV--AS 116 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHH--HH
Confidence 57899999999999999999999999999999888888776666777777766 899999999999999988888 88
Q ss_pred ceeeccCCC-CCccchhhHHHH-HHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHH
Q 010323 158 LYLSEMAPP-RHRGAFNIGYEL-CTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALI 216 (513)
Q Consensus 158 ~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~ 216 (513)
.++.|+.|+ ++|+...+.... ...+|..+++.+++.+... ...+||..|.+.......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 117 ALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHH
Confidence 999999997 678888888888 5888888888777766655 446899977666655543
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-07 Score=95.12 Aligned_cols=147 Identities=14% Similarity=0.106 Sum_probs=111.4
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHH
Q 010323 315 TIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVL 394 (513)
Q Consensus 315 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (513)
....+..... +..+...++..+|.++.|.++||+|||++++.+..+..++.+..++. ++.+...+.
T Consensus 112 ~~c~~~~~~~-~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-------------~~~~~~~~~ 177 (521)
T KOG0255|consen 112 LVCDSSTLVA-LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-------------PNYWMFLIF 177 (521)
T ss_pred eeeCcHhHHH-HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-------------CcHHHHHHH
Confidence 3444445555 77888889999999999999999999999999999999988776665 677888888
Q ss_pred HHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHHHHHHHHHHHhh
Q 010323 395 ICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFF 474 (513)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (513)
-++.+++.+.... ....+..|.++++.|+.+..+ ......++.+++...+++.. +|........+..+..++..+.
T Consensus 178 Rfl~G~~~~~~~~-~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l 253 (521)
T KOG0255|consen 178 RFLSGFFGSGPLT-VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFL 253 (521)
T ss_pred HHHHHhhccchhH-HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHc
Confidence 8888887766654 446666899999999999999 88888889899999888887 4444444444434434344444
Q ss_pred cccCC
Q 010323 475 LPETK 479 (513)
Q Consensus 475 ~~~~~ 479 (513)
.+|.+
T Consensus 254 ~~Es~ 258 (521)
T KOG0255|consen 254 PPESP 258 (521)
T ss_pred cCcCh
Confidence 44653
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-07 Score=85.40 Aligned_cols=125 Identities=17% Similarity=0.168 Sum_probs=96.4
Q ss_pred HHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHH----HHHHHHHHHHhhhhhhhhcccccceeeccCCC
Q 010323 91 IAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIY----MLIFGRVLLGVGIGFANQASSVPLYLSEMAPP 166 (513)
Q Consensus 91 l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~----~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~ 166 (513)
+.-.-|.++.+++.||+|||+.+..+.+++++..++...+.+-. ++..+|++ ..+.+.. .+.|..|.+|.
T Consensus 392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf----isg~fqv--aYvYtPEVyPT 465 (528)
T KOG0253|consen 392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF----ISGAFQV--AYVYTPEVYPT 465 (528)
T ss_pred HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH----HhchheE--EEEecCcccch
Confidence 45567889999999999999999999999999998887765433 33444554 3444556 88899999999
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccCC
Q 010323 167 RHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLPE 226 (513)
Q Consensus 167 ~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 226 (513)
+-|+...|......-+|.++.|+++... .. +-..+..+.+...++..+...++|-
T Consensus 466 avRatgvGtcSsmaRIggI~~p~iA~~~-e~----s~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 466 AVRATGVGTCSSMARIGGIFSPVIAMRA-EL----STSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred hhhhcchhhhhhHHhhhhhhhhHHHHHh-cc----ceeehHHHHHHHHHHHHHHheeeee
Confidence 9999999999999999999999998322 21 2334556667777777777777763
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.2e-08 Score=90.93 Aligned_cols=147 Identities=12% Similarity=0.088 Sum_probs=117.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHH
Q 010323 317 KLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLIC 396 (513)
Q Consensus 317 g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (513)
+....+.+ .+.....+..++.+++.|.+.||+|+|..++++...+....+++++. ++.+..+++-.
T Consensus 102 ~~e~~~iG-~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg-------------~sy~~l~vAR~ 167 (464)
T KOG3764|consen 102 DRENTQIG-LLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG-------------NSYPMLFVARS 167 (464)
T ss_pred cccccchh-HHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc-------------chhHHHHHHHH
Confidence 34445556 88888999999999999999999999999999999999999988875 56667777888
Q ss_pred HHHHhhhccccccccceecccCChhh-hhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhh-hHHHHHHHHHHHHHHHhh
Q 010323 397 VYVAGFAVSWGPLGFLVPSEIFPLEI-RSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGI-FFFFGGWVVVMTTFVHFF 474 (513)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 474 (513)
+-+.+.+.... ....+.++.+|.+. |++++|+.-.+..+|-.++|++.|.+++..|... |.+++.++++-+.+-++.
T Consensus 168 LQgvgsA~~~t-sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 168 LQGVGSAFADT-SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred HhhhhHHHHHh-hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence 88888776654 44566689999775 7999999999999999999999999999999655 555555555555555555
Q ss_pred cccC
Q 010323 475 LPET 478 (513)
Q Consensus 475 ~~~~ 478 (513)
++.+
T Consensus 247 i~p~ 250 (464)
T KOG3764|consen 247 IEPT 250 (464)
T ss_pred eCcc
Confidence 5443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.9e-08 Score=83.81 Aligned_cols=149 Identities=11% Similarity=0.043 Sum_probs=109.9
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHH-HHHHHHHhhhchhHHHHHHHHHHHHhhhhhh
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAA-FLAGSALGGAALNIYMLIFGRVLLGVGIGFA 150 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~ 150 (513)
++.||+|+...+.+.+....-.++.+++.|.++||+|++-..+.+..+ +.++.....|+ ++.=..+..+.|+.....
T Consensus 292 ~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsysll 369 (459)
T KOG4686|consen 292 QKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYSLL 369 (459)
T ss_pred HHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHHHH
Confidence 566789999999999999999999999999999999999776665444 44444444332 333345566677776665
Q ss_pred hhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHh-hHHHHHHHHHhhccc
Q 010323 151 NQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAM-AAAPALILTLGALFL 224 (513)
Q Consensus 151 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~-~~~~~~~~~~~~~~~ 224 (513)
-.. .-..++...|+++.|++.+..+...++|..+.|++++.+.+..+.+.|--.|.+ .+.+++....+.+.+
T Consensus 370 Acs--lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 370 ACS--LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHH--HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 544 445677888999999999999999999999999999998876665566655544 444555544444444
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-07 Score=93.91 Aligned_cols=134 Identities=19% Similarity=0.174 Sum_probs=95.2
Q ss_pred HhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 010323 306 GFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSK 385 (513)
Q Consensus 306 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (513)
..-++++.++.|-++... ++.....+...++.++.|+++|.+|||..++.+.++..++.+.....
T Consensus 64 a~~l~~I~~diG~~~~~~--w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA------------- 128 (599)
T PF06609_consen 64 ASILPYINADIGGSDNWS--WFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA------------- 128 (599)
T ss_pred HHHHHHHHHhcCCCccch--HHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC-------------
Confidence 334566667788765544 45566778888999999999999999999999999999998887654
Q ss_pred chhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhh
Q 010323 386 GNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGI 456 (513)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (513)
++....+....+.+.+.+.. .+....++|..|.+.|..+.++.....-....+++.+...+..+.+|..
T Consensus 129 ~~~~~~iag~~l~GvgaG~~--~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw 197 (599)
T PF06609_consen 129 QNMNTFIAGMVLYGVGAGVQ--ELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRW 197 (599)
T ss_pred CcHHHHHHHHHHHHHhhHHH--HHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcch
Confidence 56667777777777765443 2334456899999999888776665444444455666555544444544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-07 Score=89.10 Aligned_cols=179 Identities=11% Similarity=0.097 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHhhhcchhhhHhcHHHHH-HhcC----CCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHhH
Q 010323 286 QLVMAILIPFFLQVTGINVIGFYAPVLF-RTIK----LSESTSLLMSAVVTGGIGTLSTIISMILVDKL-GRKVLFLVGG 359 (513)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~ 359 (513)
+-+..++..-+..-++++.+-..+..|+ .+.+ ++++++. .....+....-...+++||++||+ |+|+.+..+.
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~-~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGa 99 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHAT-GLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGA 99 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhH-HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 3444555555566666676666666665 3455 8888888 566666666677889999999995 9999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChh--hhhhHhHHHHHHHHHH
Q 010323 360 IQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLE--IRSAGQSINVAVGFLF 437 (513)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~~ 437 (513)
+++.++.+++.... ........+.+.+..++.+.. -+....+..|++|++ .|..+.++..+..++|
T Consensus 100 il~~iGh~~L~~~~-----------~~~~~gl~i~L~~I~iG~Gl~-K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiG 167 (498)
T COG3104 100 ILMAIGHLVLAISS-----------VSGPGGLYIGLALIIVGTGLF-KPNISSLLGELYPKDDPRRDGGFTLFYMGINIG 167 (498)
T ss_pred HHHHHHHHHHhccc-----------cccccHHHHHHHHHHhccccc-cccHHHHHHHhcCCCCcccCCCccEEEEEeehH
Confidence 99999999987641 023344555555555666554 345566668998764 4677888888899999
Q ss_pred HHHHHHHhHHHHHhcchhhhHHHHHHHHHHHHHHHhhccc
Q 010323 438 TFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPE 477 (513)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (513)
+.+.|.+.+++.++.++...+..+++....+++.+...++
T Consensus 168 sl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 168 SLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999888888888888877777766553
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-07 Score=93.65 Aligned_cols=152 Identities=9% Similarity=-0.042 Sum_probs=120.1
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhc----------hhHHHHHHHHHH
Q 010323 73 NYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAA----------LNIYMLIFGRVL 142 (513)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l 142 (513)
+++|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+..... ++.+.++..-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 4578999999999999999999999999999999999999999999999888654321 344456666888
Q ss_pred HHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCC----ccchHHHH-HhhHHHHHHH
Q 010323 143 LGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKG----GWGWRISL-AMAAAPALIL 217 (513)
Q Consensus 143 ~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~----~~~wr~~f-~~~~~~~~~~ 217 (513)
.+++.+..+.. ...++.+..|+++++...++.....++|..+++.+++.+.+..+ +++.++.. .+..+..++.
T Consensus 361 ~~~~~g~~~~~--~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~ 438 (468)
T TIGR00788 361 AEVLAQLKFMP--FLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLP 438 (468)
T ss_pred HHHHHHHHHcc--HHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHH
Confidence 99999988888 88999999999999999999999999999999999888776433 22333333 2233344444
Q ss_pred HHhhcccCC
Q 010323 218 TLGALFLPE 226 (513)
Q Consensus 218 ~~~~~~~~e 226 (513)
+...+++|+
T Consensus 439 l~~~~llP~ 447 (468)
T TIGR00788 439 LPLLHLLPR 447 (468)
T ss_pred HHHHHhCCC
Confidence 444456885
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-07 Score=90.82 Aligned_cols=173 Identities=16% Similarity=0.166 Sum_probs=128.8
Q ss_pred HHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHH
Q 010323 289 MAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVM 368 (513)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 368 (513)
...++...........+..+.+.+.++++.+..+.. ++..+......+..++.+.+.||+|.|.+.+.+.++..+++++
T Consensus 49 ~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~-~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~l 127 (509)
T KOG2504|consen 49 FASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIA-WIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLL 127 (509)
T ss_pred HhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHH-HHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHH
Confidence 333344444444445555667778888998888877 8888888888899999999999999999999999999999988
Q ss_pred HHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHH
Q 010323 369 IGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAM 448 (513)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 448 (513)
-.+.. .-....+...++.++|+++.+.|....+ ...+ ++.|+.+.|+......+|.++.|.+...+
T Consensus 128 ssF~~------------~i~~l~lt~gvi~G~G~~~~~~paiviv-~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l 193 (509)
T KOG2504|consen 128 SSFAT------------SLWQLYLTFGVIGGLGLGLIYLPAVVIL-GTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYL 193 (509)
T ss_pred HHHHh------------hHHHHHHHHHHHhhccchhhhcchhhhh-hhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHH
Confidence 87762 2234555666777777777777764444 4444 58899999999999999999999999999
Q ss_pred HHhcchh-hhHHHHHHHHHHHHHHHhhcc
Q 010323 449 LCHFKAG-IFFFFGGWVVVMTTFVHFFLP 476 (513)
Q Consensus 449 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 476 (513)
.+..|+. ..++++.+.+-+......+-|
T Consensus 194 ~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 194 LSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999865 455555555444444444444
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.7e-07 Score=92.42 Aligned_cols=139 Identities=19% Similarity=0.118 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhcc
Q 010323 326 MSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVS 405 (513)
Q Consensus 326 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (513)
...+...++..++.++.|+++|++|||+.+.++.+...++.++.... .+.+...+.-++.+++.+..
T Consensus 93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-------------~~~~~l~~GR~l~G~g~G~~ 159 (513)
T KOG0254|consen 93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-------------PSWYQLIVGRILTGLGVGGA 159 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHhccchhhh
Confidence 77888889999999999999999999999999999999999998876 57778888888888888776
Q ss_pred ccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhc--chhhhHHHHHHHHHHHHHHHhhcccCC
Q 010323 406 WGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHF--KAGIFFFFGGWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 406 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (513)
.. +...+.+|..|++.||...+..+....+|..++ .+.+....+. +|...+....+..+...+..++.||+.
T Consensus 160 ~~-~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp 233 (513)
T KOG0254|consen 160 SV-LAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESP 233 (513)
T ss_pred hh-cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 54 446677999999999999999998888666665 6666666553 566555555555555555567777664
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.1e-07 Score=77.99 Aligned_cols=309 Identities=14% Similarity=0.115 Sum_probs=167.6
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhh
Q 010323 73 NYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQ 152 (513)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~ 152 (513)
+.++....++|.+..+.+-...+...+.|-++|+-|||+.-+.-.+.+.+++ +.-.+++|-.++++|.+-|+..+..+.
T Consensus 65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFS 143 (454)
T KOG4332|consen 65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFS 143 (454)
T ss_pred hhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHH
Confidence 4456677888888888887888889999999999999998766666665544 455688999999999999999988877
Q ss_pred cccccc-eeeccCCCCCccchhhHHHH----HHHHHH----HHHHHHHhhhcccCCccchHHHHHhhHHHHHHHH-Hhhc
Q 010323 153 ASSVPL-YLSEMAPPRHRGAFNIGYEL----CTAIGI----LAASLINYGTQKIKGGWGWRISLAMAAAPALILT-LGAL 222 (513)
Q Consensus 153 ~~~~~~-~i~~~~~~~~r~~~~~~~~~----~~~~G~----~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~ 222 (513)
. .-+ ++.|.- ++|+.-.-+... +.-+|. +++.+.+..+.+..+ .|--.+|-..+....+.. +..-
T Consensus 144 a--FEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~s-lGPVAPFdAAacfLaigmAvil~ 218 (454)
T KOG4332|consen 144 A--FESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFS-LGPVAPFDAAACFLAIGMAVILS 218 (454)
T ss_pred H--HHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhc-cCCCCchHHHHHHHHHHHHHHHh
Confidence 6 443 455654 234432222221 111233 333333333332222 244445544443322222 1111
Q ss_pred ccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcch
Q 010323 223 FLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGI 302 (513)
Q Consensus 223 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (513)
---|. -++ ..+.++..... +...+.+. ..++..++..+...+....+
T Consensus 219 ~W~EN------ygd-ps~~kdlltqf-----------------------~gaa~aia---SD~ki~LLG~iqsLFE~smy 265 (454)
T KOG4332|consen 219 SWSEN------YGD-PSENKDLLTQF-----------------------KGAARAIA---SDEKIALLGAIQSLFEGSMY 265 (454)
T ss_pred hhhhc------cCC-hhhhHHHHHHh-----------------------hHhHHHHh---cchHHHHHHHHHHHHhhhhh
Confidence 11111 011 11111111000 11111111 12344455555555555555
Q ss_pred hhhHhcHHHHHH-hcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcc--hHHHHhHHHHHHHHHHHHHHHHhhcCC
Q 010323 303 NVIGFYAPVLFR-TIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRK--VLFLVGGIQMLAAQVMIGSIMENQLGD 379 (513)
Q Consensus 303 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (513)
..+..|.|.+-. +.+.+ -+ .+...+.+..++|+-+..++..|-..| ..+.+.+.+..+.+.+....... .
T Consensus 266 tFVFLWTPaLspn~e~iP---hG-fiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~v-s-- 338 (454)
T KOG4332|consen 266 TFVFLWTPALSPNDEEIP---HG-FIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSV-S-- 338 (454)
T ss_pred eeeeeecccCCCCcccCC---ch-hHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhcc-C--
Confidence 555566665531 12222 12 556666677778877777766654433 34555555544444443333211 1
Q ss_pred CCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHH
Q 010323 380 QGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINV 431 (513)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 431 (513)
++..+....++..+++-.+.+..|+.+ .-+-.+..|.+.|++.+-.+.
T Consensus 339 ---P~kes~~~s~i~F~~~E~cvGlfwPSi-mkmRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 339 ---PSKESPSESLIGFCLFEACVGLFWPSI-MKMRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred ---CCcCCchHHHHHHHHHHHHHhhcchHH-HHHHHhhCCHHHHhhhhhhee
Confidence 112344455778888888888888666 444478889999987655443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-08 Score=93.56 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=90.4
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhHHHhh----hhhhHHHHHH-HHHHHHHHHHHhhhchhH--------------
Q 010323 73 NYCKFDSQLLTSFTSSLYIAGLIASLFASSVTR----AFGRRASILV-GGAAFLAGSALGGAALNI-------------- 133 (513)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~l~~-~~~~~~~~~~~~~~~~~~-------------- 133 (513)
+++|++....+.+--+..+...+.+|+.|..+| ||||||.++. +.+...++.++..++.++
T Consensus 60 ~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ 139 (498)
T KOG0637|consen 60 QSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKP 139 (498)
T ss_pred HHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccch
Confidence 344678888888888889999999999999999 4899876655 566667777777777553
Q ss_pred ---HHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccc-hhhHHHHHHHHHHHHHHHHHhhh
Q 010323 134 ---YMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGA-FNIGYELCTAIGILAASLINYGT 194 (513)
Q Consensus 134 ---~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~~~~l~~~~ 194 (513)
..++++--+.-++.-..... +-+++.|...++++.+ +++++....++|..+|..++.+.
T Consensus 140 rai~~~~lg~~LLD~A~n~~qgp--~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 140 RAIVLFILGFWLLDVANNTLQGP--CRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred HHHHHHHHHhHHHHhhhhhhhhh--HHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 23344444444555556666 7889999998776666 99999999999999998887643
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.1e-07 Score=89.00 Aligned_cols=117 Identities=12% Similarity=0.081 Sum_probs=91.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhh-----chhHHHHHHHHHHHHhhhhhhhh
Q 010323 78 DSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGA-----ALNIYMLIFGRVLLGVGIGFANQ 152 (513)
Q Consensus 78 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~Gi~~~~~~~ 152 (513)
+....+++.+...++..++.+++++++||+|+|+.+.++..+..++.+...+ .++.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777888999999999999999999999888877666555432 34567777778889999998888
Q ss_pred cccccceeeccCC-------CCCccchhhHHHHHHHHHHHHHHHHHhhhcc
Q 010323 153 ASSVPLYLSEMAP-------PRHRGAFNIGYELCTAIGILAASLINYGTQK 196 (513)
Q Consensus 153 ~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~ 196 (513)
. ..++++|..+ .++.|...+......-+|..+++.+.+.+.+
T Consensus 344 ~--~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 344 L--QVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred H--HHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 8888988865 2223558888888888999998888776653
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.5e-07 Score=85.32 Aligned_cols=149 Identities=18% Similarity=0.231 Sum_probs=117.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhc-hhHHHHH----HHHHHHHhhhhhhh
Q 010323 77 FDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAA-LNIYMLI----FGRVLLGVGIGFAN 151 (513)
Q Consensus 77 ~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~----~~r~l~Gi~~~~~~ 151 (513)
.+....+.+.+...++-.+.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+... +...+.|+..+..+
T Consensus 240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~ 319 (400)
T PF03825_consen 240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH 319 (400)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence 456677878888888888888999999999999999999999999988888877 5544433 34567999999999
Q ss_pred hcccccceeeccCCCCCccchhhHHHH-HHHHHHHHHHHHHhhhcccCC---ccchHHHHHhhHHHHHHHHHhhc-ccCC
Q 010323 152 QASSVPLYLSEMAPPRHRGAFNIGYEL-CTAIGILAASLINYGTQKIKG---GWGWRISLAMAAAPALILTLGAL-FLPE 226 (513)
Q Consensus 152 ~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~l~~~~~~~~~---~~~wr~~f~~~~~~~~~~~~~~~-~~~e 226 (513)
.. ...++.+..|++.|+++.+++.. ..++|..+|..+++.+.+..+ ...|...+.+.++..++..++.. +.+|
T Consensus 320 ~a--~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 320 AA--SVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HH--HHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99 99999999999999999999876 468999999999998876543 13466677777776666554443 3555
Q ss_pred C
Q 010323 227 T 227 (513)
Q Consensus 227 ~ 227 (513)
+
T Consensus 398 ~ 398 (400)
T PF03825_consen 398 K 398 (400)
T ss_pred C
Confidence 4
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.3e-06 Score=76.25 Aligned_cols=150 Identities=13% Similarity=0.026 Sum_probs=114.6
Q ss_pred HHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHH
Q 010323 290 AILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMI 369 (513)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 369 (513)
.....++.............|.+.+.+..+..+++ .....+..+..+.++..+++.+|+|+|+-++.+..++++++.++
T Consensus 17 ~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~-liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF 95 (422)
T COG0738 17 LLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEAS-LIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALF 95 (422)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHH-HHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33344444444455666778888888999999999 88888889999999999999999999999999999999999888
Q ss_pred HHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHH
Q 010323 370 GSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAML 449 (513)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 449 (513)
.-... ......++..+++.+.|.+..-... ..++..+.|++..+.-+.+.+.+..+|+.++|.+.+.+.
T Consensus 96 ~pAa~----------~~~y~~FL~~lFila~Gi~~Letaa-Np~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~li 164 (422)
T COG0738 96 WPAAS----------SKSYGFFLVALFILASGIGLLETAA-NPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLI 164 (422)
T ss_pred hhhhh----------hhhHHHHHHHHHHHHhhhHHHHhcc-chHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 64421 1344455555555555555443333 445567888877778889999999999999999999988
Q ss_pred Hh
Q 010323 450 CH 451 (513)
Q Consensus 450 ~~ 451 (513)
.+
T Consensus 165 ls 166 (422)
T COG0738 165 LS 166 (422)
T ss_pred Hh
Confidence 73
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.7e-07 Score=87.10 Aligned_cols=152 Identities=15% Similarity=0.063 Sum_probs=113.8
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHH
Q 010323 314 RTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILV 393 (513)
Q Consensus 314 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (513)
++.++...+.+ ...+.+.++.+++.+.++.+.||++..+.+....++..+..++-... .+.+..++
T Consensus 74 edl~~~~~~l~-~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-------------~s~~~~ia 139 (495)
T KOG2533|consen 74 EDLKLVGNQLG-VLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV-------------HSFPGLIA 139 (495)
T ss_pred cccchhhhhhh-hHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-------------hhhHHHHH
Confidence 34455556666 78888999999999999999999996655555444444433332222 56778888
Q ss_pred HHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHH------hcchh-hhHHHHHHHHH
Q 010323 394 LICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLC------HFKAG-IFFFFGGWVVV 466 (513)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~ 466 (513)
.-++.|+.-+.++++. ..+++..+.++.|+.-+|+.+....+|+++++.+...+.. ..||. .+.+-+++.++
T Consensus 140 lr~llGl~es~~wP~~-~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~ 218 (495)
T KOG2533|consen 140 LRFLLGLFESGGWPGV-VAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLV 218 (495)
T ss_pred HHHHHHHHhcccchHH-HHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHH
Confidence 8889999888887666 5555899999999999999999999999999999887643 23444 45666777777
Q ss_pred HHHHHHhhcccCCC
Q 010323 467 MTTFVHFFLPETKN 480 (513)
Q Consensus 467 ~~~~~~~~~~~~~~ 480 (513)
.+++.++++|+...
T Consensus 219 ~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 219 LGIVVFFFLPDNPS 232 (495)
T ss_pred HHheEEEEecCChh
Confidence 77788888887654
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.3e-07 Score=87.38 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhch--hHHHHHHHHHHHHhhhhhhhhccccc
Q 010323 80 QLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAAL--NIYMLIFGRVLLGVGIGFANQASSVP 157 (513)
Q Consensus 80 ~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~Gi~~~~~~~~~~~~ 157 (513)
...+.+.....++..++.+++++++||+|+|+++..+..+.+++.++..+.+ |.+.+++.-++.|++.+...+. ..
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~--~~ 337 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVI--PW 337 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccc--cc
Confidence 5678888899999999999999999999999999999999999999988886 9999999999999999999988 88
Q ss_pred ceeeccCCC-------CCccchhhHHHHHHHHHHHHHHHHHhhhcc
Q 010323 158 LYLSEMAPP-------RHRGAFNIGYELCTAIGILAASLINYGTQK 196 (513)
Q Consensus 158 ~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~ 196 (513)
++++|..+. ++.|...+.......+|..+++.+.+.+..
T Consensus 338 a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 338 AMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred cccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 999998873 334788888888888999888887776544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.7e-06 Score=81.05 Aligned_cols=116 Identities=18% Similarity=0.127 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhh--chhHHHHHHHHHHHHhhhhhhhhccccc
Q 010323 80 QLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGA--ALNIYMLIFGRVLLGVGIGFANQASSVP 157 (513)
Q Consensus 80 ~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~Gi~~~~~~~~~~~~ 157 (513)
...+.+.....+...++.+++++++||+|+|+.+..+..+.++..+...+ .++.+.+++..++.|++.+...+. ..
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~--~~ 341 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPL--QW 341 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 34455666677888889999999999999999999888766654433222 357777888889999999999888 88
Q ss_pred ceeeccCCC-------CCccchhhHHHHHHHHHHHHHHHHHhhhccc
Q 010323 158 LYLSEMAPP-------RHRGAFNIGYELCTAIGILAASLINYGTQKI 197 (513)
Q Consensus 158 ~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~ 197 (513)
++++|..+. ++.|...+.......+|..+++.+++.+.+.
T Consensus 342 am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~ 388 (444)
T PRK09669 342 SMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW 388 (444)
T ss_pred HHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899888752 2235577888888889999999888776543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-09 Score=108.10 Aligned_cols=143 Identities=20% Similarity=0.219 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhcc
Q 010323 326 MSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVS 405 (513)
Q Consensus 326 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (513)
.......++..+|+++.|+++||+|||+.+.++..+..++.++..+.. ...+.+...+.-++.|++.+..
T Consensus 50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~R~~~G~~~g~~ 119 (451)
T PF00083_consen 50 LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAP----------SYNNFWMLLIGRFLIGFGIGGA 119 (451)
T ss_pred HHHHHHHhhhcccccccccccccccccccccccccccccccccccccc----------cccccccccccccccccccccc
Confidence 667778899999999999999999999999999999888888777641 0025666777777777777766
Q ss_pred ccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHh---cchhhhHHHHHHHHHHHHHHHhhcccCC
Q 010323 406 WGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCH---FKAGIFFFFGGWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 406 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (513)
.. ....++.|..|++.|+...++.+....+|..++..+.-...+. ..|.....+..+..+...+...+.||..
T Consensus 120 ~~-~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP 195 (451)
T PF00083_consen 120 YV-VSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESP 195 (451)
T ss_pred cc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 54 4466778999999999999988887777766655544332221 2255555555555555555667778764
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.7e-06 Score=76.94 Aligned_cols=147 Identities=16% Similarity=0.082 Sum_probs=112.8
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhh-hhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhh
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAF-GRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFA 150 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~ 150 (513)
-.|-|+|..+.|++.+...+.....++....+++|. .+|+..+....++.++.+.+.+.+.-..++. -++.|+|.|..
T Consensus 235 li~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~ 313 (395)
T COG2807 235 LIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGA 313 (395)
T ss_pred HHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchH
Confidence 344578999999999999999999999999999965 5677778888888888887777765443333 48999999999
Q ss_pred hhcccccceeeccCCCCC-ccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcc
Q 010323 151 NQASSVPLYLSEMAPPRH-RGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALF 223 (513)
Q Consensus 151 ~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 223 (513)
++. ....+.+..++.+ -++..++.+....+=...||.+.+++.+..+ +|+..........+...+.-+.
T Consensus 314 F~l--aL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g--sw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 314 FPL--ALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG--SWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred HHH--HHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC--ChHHHHHHHHHHHHHHHHHHhh
Confidence 999 8888888776444 3556666666666666778888888877765 7998888777766665554433
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.44 E-value=5e-07 Score=63.71 Aligned_cols=70 Identities=14% Similarity=0.093 Sum_probs=64.8
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 010323 68 DTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLI 137 (513)
Q Consensus 68 ~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~ 137 (513)
.|.|++|.++|.++.|++.+.+++||.+|++...++.++..+++.+..+++...+..+.+++.++++.+.
T Consensus 15 LP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 15 LPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 5777888899999999999999999999999999999998899999999999999999999998887653
|
Note that many members are hypothetical proteins. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.4e-05 Score=71.43 Aligned_cols=159 Identities=16% Similarity=0.039 Sum_probs=98.0
Q ss_pred hcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 010323 307 FYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKG 386 (513)
Q Consensus 307 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (513)
.|.-.+.+++|++..+.. ...........+...+.|.+.||+|||+..+...++..++++.-.. +
T Consensus 55 pY~Y~LY~~yg~~~~qIa-~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~--------------~ 119 (354)
T PF05631_consen 55 PYLYALYESYGFSEHQIA-ILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS--------------S 119 (354)
T ss_pred chhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc--------------c
Confidence 333344578999999998 7777777888888899999999999999988888877777764322 4
Q ss_pred hhHHHHHHHHHHHHhhhccccccccceeccc----CChhhhhhHhHHHHHH-HHHHHHHHHHHhHHHHHhcch--hhhHH
Q 010323 387 NAYLILVLICVYVAGFAVSWGPLGFLVPSEI----FPLEIRSAGQSINVAV-GFLFTFLIAQTFLAMLCHFKA--GIFFF 459 (513)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~ 459 (513)
+.+..++.-++.++...+.++.-=.-++.|. +|++..+...+..... +.+-.++...+...+.+..+. ..++.
T Consensus 120 ~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~ 199 (354)
T PF05631_consen 120 NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFD 199 (354)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHH
Confidence 5666666666766666655543222233443 5666556655555533 333344444555555665543 44444
Q ss_pred HHHHHHHHHHH-HHhhcccCCC
Q 010323 460 FGGWVVVMTTF-VHFFLPETKN 480 (513)
Q Consensus 460 ~~~~~~~~~~~-~~~~~~~~~~ 480 (513)
.+..+++++.+ .....+|..+
T Consensus 200 ~a~~~l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 200 AAIVLLAVAAVLILKTWPENYG 221 (354)
T ss_pred HHHHHHHHHHHHHHhcccccCC
Confidence 44444444443 3334455544
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.6e-06 Score=79.19 Aligned_cols=185 Identities=13% Similarity=0.023 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHhhhcchhhhHhcHHHHHHh--cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCc-chHHHHhHHH
Q 010323 285 PQLVMAILIPFFLQVTGINVIGFYAPVLFRT--IKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGR-KVLFLVGGIQ 361 (513)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~ 361 (513)
+|..+...+..+.....++....-.-.|+++ .+-+.+..+ +......++..++++..|+...|.++ |+.++.+.++
T Consensus 33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG-~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii 111 (488)
T KOG2325|consen 33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFG-LVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLI 111 (488)
T ss_pred hHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhh-HHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHH
Confidence 3444555555555544444444434445555 555666666 88888999999999999999999886 8888899999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHH
Q 010323 362 MLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLI 441 (513)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~ 441 (513)
+.++.++.....+. ++...++.++.-.+.|++.+ .....-.++++..-.+.|.++.+..+...-+|..+|
T Consensus 112 ~~~g~llY~~l~~~--------~~~~~y~mL~~R~l~Gvg~~--n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilG 181 (488)
T KOG2325|consen 112 AIIGNLLYLALAYV--------PNGVKYLMLVARILTGVGVG--NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILG 181 (488)
T ss_pred HHHHHHHHHHHHhc--------ccchHHHHHHHHHHcCcCcc--cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHh
Confidence 99999888554322 22245555555555554433 334446677776666777788777776666666666
Q ss_pred HHHhHHHHHhc--c-----------hh-hhHHHHHHHHHHHHHHHhhcccCCC
Q 010323 442 AQTFLAMLCHF--K-----------AG-IFFFFGGWVVVMTTFVHFFLPETKN 480 (513)
Q Consensus 442 ~~~~~~~~~~~--~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (513)
|.+...+..-. | +. ..|+.+.+.++..++..++.+|..+
T Consensus 182 p~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 182 PTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 65543332210 0 11 3344445555555555666666544
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.7e-05 Score=76.81 Aligned_cols=141 Identities=13% Similarity=0.084 Sum_probs=89.9
Q ss_pred hhhHhcHHHH-HHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc----cCcchH-HHHhHHHHHHHHHHHHHHHHhh
Q 010323 303 NVIGFYAPVL-FRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDK----LGRKVL-FLVGGIQMLAAQVMIGSIMENQ 376 (513)
Q Consensus 303 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 376 (513)
.....|+.++ .+..|+++...+ .+..+.-+...+.-++.|+++|| +||||. ++++.+.++++..++....
T Consensus 26 ~~~~~~l~~fyt~~~Gl~~~~~g-~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p--- 101 (460)
T PRK11462 26 DNVMLYMMFFYTDIFGIPAGFVG-TMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP--- 101 (460)
T ss_pred HHHHHHHHHHHHHhhCCCHHHHH-HHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC---
Confidence 3444444444 456899998888 88888889999999999999997 466554 4556566666554443220
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCC-hhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhc
Q 010323 377 LGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFP-LEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHF 452 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 452 (513)
+. . ......+..+..+++..++.....|- .++..|+.+ +++|++..+.....+.+|+.+++.+...+....
T Consensus 102 --~~-s-~~~~~~y~~~~~~~~~~~~t~~~ipy-~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~ 173 (460)
T PRK11462 102 --DL-S-MNGKMIYAAITYTLLTLLYTVVNIPY-CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLI 173 (460)
T ss_pred --CC-C-cchHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0 01112333444444555555444444 344567765 688999999999988888888877766655544
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.6e-05 Score=72.31 Aligned_cols=117 Identities=16% Similarity=0.189 Sum_probs=94.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhch--hHHHHHHHHHHHHhhhhhhhhc
Q 010323 76 KFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAAL--NIYMLIFGRVLLGVGIGFANQA 153 (513)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~Gi~~~~~~~~ 153 (513)
|-++.+..+.......+..++.+++.++.+|+|+|+++.++.++..++.++..+.+ +.+..++..++.++|.+...+.
T Consensus 268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l 347 (467)
T COG2211 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPL 347 (467)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccc
Confidence 33667777788888888888899999999999999999999999999999888875 7888999999999999988888
Q ss_pred ccccceeeccCC------CCC-ccchhhHHHHHHHHHHHHHHHHHhhh
Q 010323 154 SSVPLYLSEMAP------PRH-RGAFNIGYELCTAIGILAASLINYGT 194 (513)
Q Consensus 154 ~~~~~~i~~~~~------~~~-r~~~~~~~~~~~~~G~~~~~~l~~~~ 194 (513)
..++++|..+ .++ -|...+......-+|.+++..+.++.
T Consensus 348 --~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~ 393 (467)
T COG2211 348 --PWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWI 393 (467)
T ss_pred --cHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778877654 222 25677777777777777777555444
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.2e-05 Score=65.07 Aligned_cols=108 Identities=21% Similarity=0.186 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeecc
Q 010323 84 SFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEM 163 (513)
Q Consensus 84 ~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~ 163 (513)
.-.++.+....+++++.+.+.+++|.|+.+++|.+.+.+-... -+-++.+.++.+-.+.|++.+..+.. ...++.+.
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~a--qg~ylt~~ 117 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTA--QGTYLTSY 117 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHh--hhHHHHHc
Confidence 3445556667788888889999999999999999999865544 35677889999999999999999998 88899999
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHhhh
Q 010323 164 APPRHRGAFNIGYELCTAIGILAASLINYGT 194 (513)
Q Consensus 164 ~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~ 194 (513)
.++++|++-.+++-.....+.++|.++..+.
T Consensus 118 s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 118 STEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888888888888775544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.4e-06 Score=76.75 Aligned_cols=109 Identities=17% Similarity=0.061 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhcc
Q 010323 326 MSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVS 405 (513)
Q Consensus 326 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (513)
.......++.++|+++.|++.||+|||++.....+++.++.++.+.... ...+..-.+.....-.+.+++.+.-
T Consensus 88 ~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~------~~~~~~~m~~L~~~R~~LGiGIGGD 161 (538)
T KOG0252|consen 88 LVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVG------TTSPLGVMMTLCFFRFLLGIGIGGD 161 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCC------CCCCcchhhHHHHHHHHhhccccCC
Confidence 7777888999999999999999999999999888888888875443211 0111123445555566666666655
Q ss_pred ccccccceecccCChhhhhhHhHHHHHHHHHHHHHH
Q 010323 406 WGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLI 441 (513)
Q Consensus 406 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~ 441 (513)
+ |+..++++|....+.||+-.+....+...|...+
T Consensus 162 Y-PlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG 196 (538)
T KOG0252|consen 162 Y-PLSATIMSESANKKTRGAFIAAVFAMQGFGILAG 196 (538)
T ss_pred C-cchHHHhhhhhhhccccceeEEEEEecchhHhhc
Confidence 4 6667788999999999988877666555544333
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.9e-05 Score=73.71 Aligned_cols=135 Identities=18% Similarity=0.175 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhcccccccc
Q 010323 332 GGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGF 411 (513)
Q Consensus 332 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (513)
++..++.+...|.++||+|||..+........+..+.+.+. . |+..+. .-...++... .....
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~--------------~-~~~~~~-~~l~g~~~~~-~s~~~ 134 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ--------------G-YWFFLL-LGLSGGFSAI-FSVGF 134 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH--------------H-HHHhhh-cccccchhhh-hhhhh
Confidence 67788899999999999999999998888877777766653 2 232222 2222222222 33446
Q ss_pred ceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhh-hHHHHHHHHHHHHHHHhhcccCCCCCH
Q 010323 412 LVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGI-FFFFGGWVVVMTTFVHFFLPETKNVPI 483 (513)
Q Consensus 412 ~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (513)
+++++....+.|....|+.+.....+..++|...+.+....+... +.+..+...+........+||+...+.
T Consensus 135 a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 135 AYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred hheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 677899999999999999999999999999999999999888554 444444445555555667787765443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.1e-05 Score=71.17 Aligned_cols=152 Identities=14% Similarity=0.111 Sum_probs=125.4
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhh-hhhhHHHHHHHHHHHHHHHHHhhh---chhHHHHHHHHHHH
Q 010323 68 DTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTR-AFGRRASILVGGAAFLAGSALGGA---ALNIYMLIFGRVLL 143 (513)
Q Consensus 68 ~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~ 143 (513)
+|.=.+-||+|..+...++.....|..++-...|++.. |.++|+.-.+++....++..+..+ ..+.+.+...-++.
T Consensus 232 EPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~ 311 (403)
T PF03209_consen 232 EPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLL 311 (403)
T ss_pred CCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 56667788999999999999999999999999999887 678888888888877777665443 46788999999999
Q ss_pred HhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccC-------CccchHHHHHhhHHHHHH
Q 010323 144 GVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIK-------GGWGWRISLAMAAAPALI 216 (513)
Q Consensus 144 Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~-------~~~~wr~~f~~~~~~~~~ 216 (513)
|++.|..... ..+...+...+++.|..+|.++....++..++..+++.+.+.. ...++-.+|.+.++..++
T Consensus 312 G~g~G~f~vg--als~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~ 389 (403)
T PF03209_consen 312 GLGNGLFTVG--ALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLA 389 (403)
T ss_pred HHhhhHHHHH--HHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 9999999888 8888999999999999999999999999999999988876532 224677788887776666
Q ss_pred HHHhh
Q 010323 217 LTLGA 221 (513)
Q Consensus 217 ~~~~~ 221 (513)
.+.+.
T Consensus 390 a~~ll 394 (403)
T PF03209_consen 390 ALVLL 394 (403)
T ss_pred HHHHH
Confidence 55444
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.9e-05 Score=67.14 Aligned_cols=135 Identities=18% Similarity=0.132 Sum_probs=80.9
Q ss_pred HHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhh-----
Q 010323 31 ATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTR----- 105 (513)
Q Consensus 31 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d----- 105 (513)
.+.+...|......+ ++|-+++ .=|.|.++.+...-++. -..--+.|.++.|
T Consensus 37 l~LYllQGiP~GL~~---~iP~lL~------------------ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k 93 (510)
T KOG3574|consen 37 LFLYLLQGIPLGLIG---AIPLLLQ------------------AKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSK 93 (510)
T ss_pred HHHHHHcCCchhHhh---hhHHHhc------------------CCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHH
Confidence 444677777777665 2233332 11346666655433322 1233578899999
Q ss_pred hhhhHHHHHH-HHHHHHHHHHHhhh-----------chhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchh
Q 010323 106 AFGRRASILV-GGAAFLAGSALGGA-----------ALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFN 173 (513)
Q Consensus 106 r~Grr~~l~~-~~~~~~~~~~~~~~-----------~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~ 173 (513)
|+||||.-++ +..+.+..+...+. .++...+...-++.-+.++.--.+ +-.+.-....+++.|-+.
T Consensus 94 ~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIA--VDgwALtmLs~e~lgyaS 171 (510)
T KOG3574|consen 94 RFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIA--VDGWALTMLSRENLGYAS 171 (510)
T ss_pred hhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhh--hhHHHHHhcCHhhcCchh
Confidence 9999986433 33333333333332 233444444445555656655555 556666777889999999
Q ss_pred hHHHHHHHHHHHHHHHH
Q 010323 174 IGYELCTAIGILAASLI 190 (513)
Q Consensus 174 ~~~~~~~~~G~~~~~~l 190 (513)
.....+...|..++..+
T Consensus 172 T~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 172 TCQSVGQTAGYFLGNVV 188 (510)
T ss_pred HHHHHHHhhhHHhhcce
Confidence 88888888888888766
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-06 Score=82.73 Aligned_cols=143 Identities=16% Similarity=0.109 Sum_probs=121.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhccc
Q 010323 76 KFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASS 155 (513)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~ 155 (513)
+-.+...|........+-.+.-++.+++..++|+-+++.+++.+..+=.+..+..+|.|+.+-..+++|+..+.++.+
T Consensus 402 ~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa-- 479 (618)
T KOG3762|consen 402 GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAA-- 479 (618)
T ss_pred CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHH--
Confidence 335566677777777888888899999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeccCCCCCccchhhHHHH-HHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcc
Q 010323 156 VPLYLSEMAPPRHRGAFNIGYEL-CTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALF 223 (513)
Q Consensus 156 ~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 223 (513)
..+|++...||+-|..+.++.+. ..++|-.+|.++|+.+... ++=|..|.+.++.+++.++....
T Consensus 480 ~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~---fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 480 IISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER---FGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee---ehhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888764 4567888888888877654 56888998888877776554433
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0027 Score=62.16 Aligned_cols=256 Identities=12% Similarity=0.114 Sum_probs=140.8
Q ss_pred chhHHHHHHHHHHH-HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhc---------h----------------
Q 010323 78 DSQLLTSFTSSLYI-AGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAA---------L---------------- 131 (513)
Q Consensus 78 s~~~~~~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~---------------- 131 (513)
.++.+..+-....+ ...+...+..++++|++|.+++-+....+.....+.++. +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 55666676665555 345557789999999999998877766666655555542 1
Q ss_pred ------hHHHHHHHHHHHHhhhhhhhh-cccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcc-c-----C
Q 010323 132 ------NIYMLIFGRVLLGVGIGFANQ-ASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQK-I-----K 198 (513)
Q Consensus 132 ------~~~~l~~~r~l~Gi~~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~-~-----~ 198 (513)
+.|.+.+..++.-+-...... . --.+..|.++.+|-.|..++++.+.++|.++++.+...+.+ . .
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlL--FW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~ 213 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLL--FWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPA 213 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 112232333332222222221 2 34567899999999999999999999999999988777766 1 1
Q ss_pred CccchHHHHHh-hHHH---HHHHHHhhcccC----CChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhh
Q 010323 199 GGWGWRISLAM-AAAP---ALILTLGALFLP----ETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKT 270 (513)
Q Consensus 199 ~~~~wr~~f~~-~~~~---~~~~~~~~~~~~----e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (513)
+...|...... .++. +++......++. +.|+.. .....+++++
T Consensus 214 ~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~-----------------------------~~~~~~kk~k 264 (491)
T PF03219_consen 214 GVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFY-----------------------------PSAKKKKKKK 264 (491)
T ss_pred ccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccc-----------------------------hhhhcccccC
Confidence 12346644322 2121 222222222221 111100 0111122334
Q ss_pred cCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHH---HHHHHHHHHHHHHHHHHHHHhhh
Q 010323 271 VNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSL---LMSAVVTGGIGTLSTIISMILVD 347 (513)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d 347 (513)
++.+.++-++...+.+.+..+.+...+.......+-...-...++..-++.+.. +-.....++..++..++++.+.+
T Consensus 265 ~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir 344 (491)
T PF03219_consen 265 PKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIR 344 (491)
T ss_pred CCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666555556666666665555544444333333233333333332211 13345556666677788889999
Q ss_pred ccCcchHHHHhHHHHHH
Q 010323 348 KLGRKVLFLVGGIQMLA 364 (513)
Q Consensus 348 ~~g~~~~~~~~~~~~~~ 364 (513)
|+|-+....+.-+++.+
T Consensus 345 ~~GW~~~AlitPiv~li 361 (491)
T PF03219_consen 345 RFGWRTAALITPIVILI 361 (491)
T ss_pred HhhHHHHHHHhHHHHHH
Confidence 99988766654444333
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.7e-05 Score=72.10 Aligned_cols=37 Identities=14% Similarity=-0.103 Sum_probs=31.0
Q ss_pred cccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHh
Q 010323 415 SEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCH 451 (513)
Q Consensus 415 ~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 451 (513)
+.+..|..-|+.+.+.|++.++|+---..+.-++.|.
T Consensus 431 arISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 431 ARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred hhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 6788889999999999999999987766666666664
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00059 Score=66.13 Aligned_cols=116 Identities=7% Similarity=-0.072 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCcc-hHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhc
Q 010323 326 MSAVVTGGIGTLSTIISMILVDKLGRK-VLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAV 404 (513)
Q Consensus 326 ~~~~~~~~~~~~~~~~~g~l~d~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (513)
.....+.++..+|+.+..+..- -++| +.+.+..+.=.+...++.+.. .......+..-.+.+..++..+++++..|.
T Consensus 311 i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~iFIPlf~lcn-~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 311 ICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVLFIPLFLLCN-YPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHHHHHHHHHhc-CCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 6677788999999986654321 1222 233332222222222222111 100000000113445555566666665544
Q ss_pred cccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHH
Q 010323 405 SWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQT 444 (513)
Q Consensus 405 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~ 444 (513)
. ......+..+..++++|..+-.+...+-.+|-.+|..+
T Consensus 389 ~-~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 389 L-GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred H-HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34445556777888888877777777666666665554
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0096 Score=56.85 Aligned_cols=262 Identities=12% Similarity=0.076 Sum_probs=144.3
Q ss_pred chhHHHHHHHHHHH-HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhc---------hh---------------
Q 010323 78 DSQLLTSFTSSLYI-AGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAA---------LN--------------- 132 (513)
Q Consensus 78 s~~~~~~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~--------------- 132 (513)
.+..+.++-+..-+ +..+..++.+++.+++.|.+++-+.+..+....+++++. ++
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 56677888888887 667888999999999999999888777777666666653 11
Q ss_pred --------HHHHHHHHHHHHhhhhhhhh-cccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCc---
Q 010323 133 --------IYMLIFGRVLLGVGIGFANQ-ASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGG--- 200 (513)
Q Consensus 133 --------~~~l~~~r~l~Gi~~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~--- 200 (513)
.|..-+...+.=+-...... . --....|.+..+|-.|..++++.+.+++..++..+...+....+.
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~l--Fw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~ 216 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLL--FWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALAS 216 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhH
Confidence 12222222222222122111 1 223567888888889999999999999999999887777653221
Q ss_pred ----cchHHHHHhhHHHHHHHHHhhccc----CCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcC
Q 010323 201 ----WGWRISLAMAAAPALILTLGALFL----PETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVN 272 (513)
Q Consensus 201 ----~~wr~~f~~~~~~~~~~~~~~~~~----~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (513)
..-+..+.+.+..++++..+.+++ .+.|+....+. .++++++.+
T Consensus 217 ~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~----------------------------~kk~~~k~k 268 (509)
T COG3202 217 EFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAK----------------------------KKKKKKKLK 268 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHh----------------------------ccccccccc
Confidence 113334444444444444443332 33343221110 111122334
Q ss_pred CcchhhcccCchhHHHHHHHHHHHhhhcchhhh-HhcHHHHHHhcCCCchhHH--HHHHHHHHHH-HHHHHHHHHHhhhc
Q 010323 273 HPFKKIIQRKYRPQLVMAILIPFFLQVTGINVI-GFYAPVLFRTIKLSESTSL--LMSAVVTGGI-GTLSTIISMILVDK 348 (513)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~-~~~~~~~~g~l~d~ 348 (513)
.++.+.++...+.|.+..+.+...+...+...+ ..|-...-+.+....+... +......++. .++....++.+.+|
T Consensus 269 ~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~ 348 (509)
T COG3202 269 LGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRR 348 (509)
T ss_pred CcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 455565555556666666655555544333322 1222222222222222221 1223333444 44556677788888
Q ss_pred cCcchHHHHhHHHHHHHHHHH
Q 010323 349 LGRKVLFLVGGIQMLAAQVMI 369 (513)
Q Consensus 349 ~g~~~~~~~~~~~~~~~~~~~ 369 (513)
.|-....++.-+++.+..+++
T Consensus 349 ~GW~~~AlitPiv~litg~lF 369 (509)
T COG3202 349 VGWFTGALITPLVMLITGVLF 369 (509)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 887766655555555544433
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.2e-05 Score=52.22 Aligned_cols=66 Identities=20% Similarity=0.366 Sum_probs=55.2
Q ss_pred HHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHH
Q 010323 295 FFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQ 361 (513)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 361 (513)
.+..++....+.-|.|.++++.|+++.+.+ .+..+..+..+++.++.|.++||.++++........
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iG-il~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLKQLGLSPSQIG-ILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 334445556777888999999999999999 888899999999999999999999999887765544
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.026 Score=52.99 Aligned_cols=110 Identities=6% Similarity=-0.081 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccc
Q 010323 331 TGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLG 410 (513)
Q Consensus 331 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (513)
+.+...+|.+...+..++- || .+.+...+-.+..-++....+ .+ .+.-..+.++.+...+++++..+-. ..+.
T Consensus 292 fN~~d~vG~~~a~~~~~~~-~r-~l~i~v~lR~lfiPlF~~cn~---~~-~~v~~~~~~~~~~l~~~lglsnGYl-tsl~ 364 (406)
T KOG1479|consen 292 FNVFDLIGSILAALLTWPD-PR-KLTIPVLLRLLFIPLFLLCNY---PP-LPVVFESDGWFIFLMSLLGLSNGYL-TSLI 364 (406)
T ss_pred hHHHHHhhhhhhhcccCCC-Cc-eehHHHHHHHHHHHHHHHhcc---CC-CCceecCchHHHHHHHHHHhccchH-hhhe
Confidence 6677777866666554433 23 222222222222222221110 00 1111244556666666666665433 4555
Q ss_pred cceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHH
Q 010323 411 FLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAM 448 (513)
Q Consensus 411 ~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 448 (513)
..+..+..|++.+-.+-.+... .-.++...+.+.+++
T Consensus 365 m~~aPk~v~~~e~e~aG~~m~~-fl~~Gl~~G~~~s~l 401 (406)
T KOG1479|consen 365 MMYAPKQVKPSEKEAAGNLMVF-FLVGGLALGSLLSWV 401 (406)
T ss_pred ehhcCCCCChHHHHHHHHHHHH-HHHHHHHHhhHHHHH
Confidence 6777788887776555444444 434444444444444
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00025 Score=67.99 Aligned_cols=108 Identities=20% Similarity=0.305 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHhhhc---hh------HHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCC---ccchhhHHHH
Q 010323 111 ASILVGGAAFLAGSALGGAA---LN------IYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRH---RGAFNIGYEL 178 (513)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~---~~------~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~ 178 (513)
|+++++.+++.+|.++..++ .+ .+.++++-.+.++|.|+.-|. ..++.+|.+++++ |.....++..
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~n--i~~~~~dq~~~~~~~~~~~~F~~fY~ 79 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPN--ISPFGADQYDEDDDSRRDSFFNWFYW 79 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHH--HHHHHHHCSSTTTTTHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhcccccccc--HHHHHHHHhcccchhhhhhhHHHHHH
Confidence 57788888888988885443 22 367899999999999999999 9999999998663 4567888999
Q ss_pred HHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcc
Q 010323 179 CTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALF 223 (513)
Q Consensus 179 ~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 223 (513)
+.++|..++..+..++.+ +.+|.+.|.+.++..++..+..+.
T Consensus 80 ~in~G~~~~~~~~~~i~~---~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 80 GINIGSLFSPTLVPYIQQ---NYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHHHCCCHHHH---CS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhhHhhcccchhhcc---ccchhhhhhHHHHHHHHHHHHHHh
Confidence 999999999988666653 368999999988877766554443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0027 Score=63.51 Aligned_cols=144 Identities=15% Similarity=0.124 Sum_probs=105.3
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhh-hhHHHHHHHHHHHHHHHHHhhhchh------------------
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAF-GRRASILVGGAAFLAGSALGGAALN------------------ 132 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~------------------ 132 (513)
.+++|.+...+.-..+.+.-......+.+++++|-| ||-+++.++.++..++.++..++..
T Consensus 65 t~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c 144 (571)
T KOG1237|consen 65 TLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVC 144 (571)
T ss_pred HHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcc
Confidence 444556677777777778777788889999999975 8999999999888888655444311
Q ss_pred -------HHHHHHHHHHHHhhhhhhhhcccccceeeccCC---CCC---ccchhhHHHHHHHHHHHHHHHHHhhhcccCC
Q 010323 133 -------IYMLIFGRVLLGVGIGFANQASSVPLYLSEMAP---PRH---RGAFNIGYELCTAIGILAASLINYGTQKIKG 199 (513)
Q Consensus 133 -------~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~---~~~---r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~ 199 (513)
...+..+.-+..+|.|+.-+. ..++-+|-++ +++ +...+.++....++|..++..+-.... +
T Consensus 145 ~~~s~~q~~~~~~~l~lia~G~gg~r~~--~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq---~ 219 (571)
T KOG1237|consen 145 ESPSKLQLAVLYGALYLIALGAGGIRPC--LLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ---D 219 (571)
T ss_pred cCcchHHHHHHHHHHHHheeccCCCCCc--chhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhh---h
Confidence 135666677778899999988 8888899888 322 236788888889999988887744443 3
Q ss_pred ccchHHHHHhhHHHHHHHHHh
Q 010323 200 GWGWRISLAMAAAPALILTLG 220 (513)
Q Consensus 200 ~~~wr~~f~~~~~~~~~~~~~ 220 (513)
+.+|.+.|.+..+...+.+++
T Consensus 220 ~~~w~lgf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 220 NVGWKLGFGIPTVLNALAILI 240 (571)
T ss_pred cccceeeccHHHHHHHHHHHH
Confidence 368999998877665554443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0016 Score=66.33 Aligned_cols=137 Identities=15% Similarity=0.003 Sum_probs=92.0
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcch
Q 010323 309 APVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDK-LGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGN 387 (513)
Q Consensus 309 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (513)
..++.+..+++...+. .....+....-+..+++|+++|+ +|+++.+.++.++..++..++.+.... .. .....
T Consensus 11 vlYl~~~lg~~~~~A~-~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~---~~--~~~~~ 84 (654)
T TIGR00926 11 VLYFLNFLGFSESTST-VLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIP---SS--GHPLH 84 (654)
T ss_pred HHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCc---cc--ccchH
Confidence 3344456788888777 56666666677788899999997 599999999988888888776653110 00 00111
Q ss_pred hHHHHHHHHHHHHhhhccccccccceecccCChh---hhhhHhHHHHHHHHHHHHHHHHHhHHHHHhc
Q 010323 388 AYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLE---IRSAGQSINVAVGFLFTFLIAQTFLAMLCHF 452 (513)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 452 (513)
....+..+.+..+|.+..-++. .....|.++++ .+.....+.....++|+.+++.+.+++.+..
T Consensus 85 ~~~~l~gLaLia~G~GgiKp~v-saf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~ 151 (654)
T TIGR00926 85 DLLDLLGLALIALGTGGIKPCV-SAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDV 151 (654)
T ss_pred HHHHHHHHHHHHhhccccccCc-hhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2334455555556655554444 44556777643 4677888888999999999999999887553
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.77 E-value=8.7e-05 Score=52.10 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=42.1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Q 010323 74 YCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAF 120 (513)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 120 (513)
+.|++..++|.+.++..+...++++++|.++||+|+++..+....+.
T Consensus 29 ~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 29 QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 46889999999999999999999999999999999998887765543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.003 Score=59.65 Aligned_cols=178 Identities=13% Similarity=0.044 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHhhhcchhhhHhcHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHH
Q 010323 285 PQLVMAILIPFFLQVTGINVIGFYAPVLFRT-IKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQML 363 (513)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 363 (513)
+....++...++..+- -.-.+..|++.+. .+++.++...-+.-...=..++.-+....+.|.++.|++++++.+...
T Consensus 5 ~~~~llc~~gf~~~fr--PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i 82 (412)
T PF01770_consen 5 KITLLLCLFGFFKEFR--PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYI 82 (412)
T ss_pred HHHHHHHHHHHHHhcC--CCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3444445444444433 2334455566554 788887776344444444555666778889999999999999888877
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHH
Q 010323 364 AAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQ 443 (513)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 443 (513)
+...++.+. ++.+..-+.-+.++...+.-. ..+.++=...|+++--++.+......-+|.+++..
T Consensus 83 ~t~~lll~~-------------~sv~~mq~~q~~yg~~~a~ev--ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~ 147 (412)
T PF01770_consen 83 ITWLLLLFG-------------TSVLAMQLMQFFYGLATAAEV--AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSL 147 (412)
T ss_pred HHHHHHHHH-------------CcHHHHHHHHHHHHHHHHHHH--HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766554 455555556666665544322 22333335557777677888888888787777777
Q ss_pred HhHHHHHhcc--hhhhHHHHHHHHHHHHHHHhhcccCC
Q 010323 444 TFLAMLCHFK--AGIFFFFGGWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 444 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (513)
+.-.+....+ +.....+......++++..+++|..+
T Consensus 148 lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~ 185 (412)
T PF01770_consen 148 LGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPK 185 (412)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 7666665333 33333444455555666667777654
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0021 Score=52.23 Aligned_cols=108 Identities=17% Similarity=0.110 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhcc
Q 010323 326 MSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVS 405 (513)
Q Consensus 326 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (513)
....+......++.++.+.+.+++|.|+.++++.....+....... .+.+..+....+.+++.+..
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~--------------~~~~~l~~~s~l~G~~~a~l 106 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY--------------PNSYTLYPASALLGFGAALL 106 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHhhhhHHh
Confidence 4555666677788888999999999999999988887765555432 45677788888888888888
Q ss_pred ccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHH
Q 010323 406 WGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAM 448 (513)
Q Consensus 406 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 448 (513)
|..-. .++.+...++.+++..++...+.+.+..+|..+.-.+
T Consensus 107 W~aqg-~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 107 WTAQG-TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHhhh-HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76653 4446888889999999998888887777666554443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0039 Score=58.71 Aligned_cols=125 Identities=14% Similarity=-0.023 Sum_probs=83.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhH--HHHHHHH
Q 010323 319 SESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAY--LILVLIC 396 (513)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 396 (513)
+...+. +...++.+..++..+.+-|+.||+|-|....++.....++..+=..... +.-++..+ +....-.
T Consensus 77 s~~~~~-wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~-------p~v~~~f~~~l~~~Gq~ 148 (480)
T KOG2563|consen 77 SSSAAD-WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSL-------PFVPPLFRRPLTHTGQS 148 (480)
T ss_pred chHHHH-HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccC-------ccccccchhhhhHHhHH
Confidence 444455 7788888999999999999999999999999999998888776544321 00012223 2223333
Q ss_pred HHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhc
Q 010323 397 VYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHF 452 (513)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 452 (513)
+.....-.. ..++.-+..-.+|+++|+++..+..+...+|.+++-.+-..+..+.
T Consensus 149 iaa~Aq~Fi-m~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 149 IAAAAQPFI-LGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HHHHhhhHh-hccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 332222111 1222333345689999999999999988898888777766665544
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0059 Score=53.23 Aligned_cols=59 Identities=8% Similarity=0.071 Sum_probs=38.4
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHhhhccc--CCccchHHHHHhhHHHHHHHHHhhccc
Q 010323 166 PRHRGAFNIGYELCTAIGILAASLINYGTQKI--KGGWGWRISLAMAAAPALILTLGALFL 224 (513)
Q Consensus 166 ~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~--~~~~~wr~~f~~~~~~~~~~~~~~~~~ 224 (513)
+|+|+..+.....+.++|.++.-..-....+. ....+|++.+.+.+++.++-+++..++
T Consensus 1 ~k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 1 QKKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CCccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36788888888888999988766542111011 111369999999888877665555443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0039 Score=60.86 Aligned_cols=156 Identities=18% Similarity=0.139 Sum_probs=89.2
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccC-----cchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCC
Q 010323 309 APVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLG-----RKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGF 383 (513)
Q Consensus 309 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (513)
.+++.+++|.++.+.. .......+. -...++.|.++|.+. ||..++++.++..++...+.....
T Consensus 13 ~~~l~~~l~ls~~~~~-~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~--------- 81 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQLQ-RLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA--------- 81 (433)
T ss_pred HHHHHHHcCCCHHHHH-HHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc---------
Confidence 3455577999988877 444433332 345678899999873 444455555555444444444310
Q ss_pred CcchhHHHHHHHHHHHHhhhccccccccceecccC---ChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHH-
Q 010323 384 SKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIF---PLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFF- 459 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 459 (513)
...+.....+++.+..++....- ...-.+..|.. |.+ +|...+.......+|+.++..+.|.+.+..++...+.
T Consensus 82 ~~~s~~~~~~~l~la~~g~a~~D-V~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i 159 (433)
T PF03092_consen 82 SESSAAIAVVLLFLASFGYAFAD-VAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLI 159 (433)
T ss_pred ccchhhhHHHHHHHHHHHHHHHH-HhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehH
Confidence 11223333333344444433332 22233334554 444 7888888889999999999999999998887554333
Q ss_pred HHHHHHHHHHHHHhhccc
Q 010323 460 FGGWVVVMTTFVHFFLPE 477 (513)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~ 477 (513)
.+.+..+..+...+..+|
T Consensus 160 ~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 160 SAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 333334443444444444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.026 Score=55.14 Aligned_cols=114 Identities=10% Similarity=-0.018 Sum_probs=72.3
Q ss_pred HHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCC----------CCcc--------hhHHHHHHHHHH
Q 010323 337 LSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGG----------FSKG--------NAYLILVLICVY 398 (513)
Q Consensus 337 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~--------~~~~~~~~~~~~ 398 (513)
+..++.+++++|++|++.+............++.+..........+ .+.+ ..|......+..
T Consensus 59 ~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~ 138 (472)
T TIGR00769 59 IFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMA 138 (472)
T ss_pred HHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHH
Confidence 3377889999999999988777666666666655553221000000 0000 122222222222
Q ss_pred HHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHH
Q 010323 399 VAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLC 450 (513)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 450 (513)
........+-+.|..++|.+..++..+-.++....+++|..+++.+..++.+
T Consensus 139 elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 139 ELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222223233668888999999999999999999999999999999888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.11 E-value=8.1e-05 Score=74.14 Aligned_cols=155 Identities=12% Similarity=-0.056 Sum_probs=1.1
Q ss_pred HHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHH
Q 010323 293 IPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSI 372 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 372 (513)
+..+.+...........+.+-++++++..+.+ .+.+..-++.++..++..++.+|-+|-|++-.+.++++++.+++.+-
T Consensus 10 ~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G-~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lP 88 (539)
T PF03137_consen 10 LLGLFQMMVSGYVNSSLTTIERRFGLSSSQSG-LISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALP 88 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhcc
Confidence 33344444444555556667778999999999 88889999999999999999999888889999999988888877643
Q ss_pred HHhhcCC----CC-----------------------------CCCcch----hHHHHHHHHHHHHhhhccccccccceec
Q 010323 373 MENQLGD----QG-----------------------------GFSKGN----AYLILVLICVYVAGFAVSWGPLGFLVPS 415 (513)
Q Consensus 373 ~~~~~~~----~~-----------------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (513)
-+..-.. .. ...... .+.+++.-++.+++... ..++..+|+-
T Consensus 89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~p-l~tLG~tYiD 167 (539)
T PF03137_consen 89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATP-LYTLGITYID 167 (539)
T ss_dssp ---------------------------------------------------------------SSS--------------
T ss_pred HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccC-Cccceeeeec
Confidence 2221100 00 000111 12223333333333222 2356678888
Q ss_pred ccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHH
Q 010323 416 EIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAML 449 (513)
Q Consensus 416 ~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 449 (513)
|..+++..+...|+......+|-++|-.+.+...
T Consensus 168 Dnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 168 DNVSKKNSPLYIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp ----------------------------------
T ss_pred cccccccCccchhhhhHHhhccHHHHHHHHHHHH
Confidence 9999999999999999988887776655555444
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.049 Score=54.38 Aligned_cols=117 Identities=13% Similarity=0.000 Sum_probs=66.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHH-HHHHHH-HHHHHh----hhchhH-HHHHHHHHHHHhhhh
Q 010323 76 KFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILV-GGAAFL-AGSALG----GAALNI-YMLIFGRVLLGVGIG 148 (513)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~-~~~~~~----~~~~~~-~~l~~~r~l~Gi~~~ 148 (513)
|-+..+.+.+.+++.+|.++|+.+++++.++.-|+....- ++.+.+ ++..+. ++...+ ..++..-++.++..|
T Consensus 46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G 125 (521)
T PRK03612 46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIG 125 (521)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478889999999999999999999988754333322111 111111 111111 111111 222334556677788
Q ss_pred hhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhc
Q 010323 149 FANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQ 195 (513)
Q Consensus 149 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~ 195 (513)
+..|. ...+..+... ++-+...|-......+|.++|.++.+++.
T Consensus 126 ~~~Pl--~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vL 169 (521)
T PRK03612 126 MEIPL--LMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLL 169 (521)
T ss_pred HHHHH--HHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence 88777 5554443222 22355666777777777777777765543
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.15 Score=49.22 Aligned_cols=157 Identities=11% Similarity=-0.036 Sum_probs=76.2
Q ss_pred hhhcchhhhHhcHHHHHHhc-CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHH----HHHHHHH
Q 010323 297 LQVTGINVIGFYAPVLFRTI-KLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLA----AQVMIGS 371 (513)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~----~~~~~~~ 371 (513)
....+.-...+-.+.++.+. ..+--... .....-.+..++.+...|...||..|.+....+....-+ +..++..
T Consensus 13 ls~w~dR~w~Fa~~L~L~~i~p~sLl~~s-iygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~ 91 (432)
T PF06963_consen 13 LSTWGDRMWEFAVPLFLISIFPGSLLPVS-IYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLL 91 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455556666554 22333333 455566677788888889999999998876655444322 2222222
Q ss_pred HHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceec----ccC--ChhhhhhHhHHHHHHHHHHHHHHHHHh
Q 010323 372 IMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPS----EIF--PLEIRSAGQSINVAVGFLFTFLIAQTF 445 (513)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--p~~~~~~~~g~~~~~~~~~~~~~~~~~ 445 (513)
..... .....+....+..+....+.+.....+.......+-- .+. +++.....++...-+=.+...++|.+.
T Consensus 92 l~~~~--~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~v 169 (432)
T PF06963_consen 92 LLSYP--SSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFV 169 (432)
T ss_pred HHhCC--ccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110 0000001112222222222222222221111111101 112 234444555555555567899999999
Q ss_pred HHHHHhcchhh
Q 010323 446 LAMLCHFKAGI 456 (513)
Q Consensus 446 ~~~~~~~~~~~ 456 (513)
|.+.+..+...
T Consensus 170 G~l~t~~s~~~ 180 (432)
T PF06963_consen 170 GLLMTFASPVI 180 (432)
T ss_pred HHHhhccCHHH
Confidence 99998777544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.022 Score=40.47 Aligned_cols=69 Identities=12% Similarity=-0.048 Sum_probs=60.0
Q ss_pred hhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHH
Q 010323 303 NVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSI 372 (513)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 372 (513)
+.++..+|.+.++.+++..+.+ .+.+...++..+|.+...++.++.++++.+..+.+...+....+.+.
T Consensus 9 FayTplLP~M~~~~~ls~~~ag-~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLSLSQAG-WLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHhHhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678999999999999999 88999999999999999999999888888888888888888877765
|
Note that many members are hypothetical proteins. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0004 Score=64.40 Aligned_cols=117 Identities=5% Similarity=-0.143 Sum_probs=2.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccc
Q 010323 327 SAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSW 406 (513)
Q Consensus 327 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (513)
....+.++..+|+.+..+..-+..+++.+.+..+.=.+...++............+..-.+.+..++..+++++..|..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl- 265 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL- 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh-
Confidence 4567889999999988875322123333333322222222222221110000000001123445555555666554433
Q ss_pred cccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHH
Q 010323 407 GPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQT 444 (513)
Q Consensus 407 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~ 444 (513)
..+...+..+..+++.|..+-.+....-.+|-.+|..+
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp -HHHH---------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666788887888777666666555555555443
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.048 Score=55.45 Aligned_cols=194 Identities=13% Similarity=0.028 Sum_probs=120.0
Q ss_pred HHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHH
Q 010323 287 LVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQ 366 (513)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 366 (513)
.+.+..+..+.+......+...+..+-++++++..+.+ .+....-++..+...+..+...|..|-+++-++.++++++.
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG-~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSG-LIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS 176 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcce-eEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence 34444444444444444445555555677899988877 77778888888888899999999999999999999999888
Q ss_pred HHHHHHHHhh--------c---CCCC----------------------CC----Ccch-hH-HHHHHHHHHHHhhhcccc
Q 010323 367 VMIGSIMENQ--------L---GDQG----------------------GF----SKGN-AY-LILVLICVYVAGFAVSWG 407 (513)
Q Consensus 367 ~~~~~~~~~~--------~---~~~~----------------------~~----~~~~-~~-~~~~~~~~~~~~~~~~~~ 407 (513)
++..+--... . .... .. ..++ .+ +++...++.|+|-. -..
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~T-pi~ 255 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGAT-PIF 255 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCC-CCc
Confidence 8876542110 0 0000 00 0011 22 22333333333332 233
Q ss_pred ccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhc------------------c-hhhhHHHHHHHHHHH
Q 010323 408 PLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHF------------------K-AGIFFFFGGWVVVMT 468 (513)
Q Consensus 408 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------------------~-~~~~~~~~~~~~~~~ 468 (513)
++...++-|...++......|+...+..+|-++|-.+.+.....+ | |+.-+++++...+..
T Consensus 256 tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~ 335 (735)
T KOG3626|consen 256 TLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS 335 (735)
T ss_pred cCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 566788888888888888999999988888777766666555322 1 122334444445555
Q ss_pred HHHHhhcccCCCCC
Q 010323 469 TFVHFFLPETKNVP 482 (513)
Q Consensus 469 ~~~~~~~~~~~~~~ 482 (513)
.+.+++.|+..++.
T Consensus 336 a~p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 336 AVPLFFFPKELPKS 349 (735)
T ss_pred HHHHHhCcccCccc
Confidence 55566777655443
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0063 Score=54.08 Aligned_cols=133 Identities=13% Similarity=0.023 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeec
Q 010323 83 TSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSE 162 (513)
Q Consensus 83 ~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~ 162 (513)
|.+.-+-.+...+..+.+....||+---.=..+..++.+.+.++.+++++.++-+++-.+..++.|..... ...+ +.
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiT--FL~l-ss 141 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEIT--FLAL-SS 141 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceee--hhhh-hc
Confidence 33444444555666666777788864433345566778888999999999999999988888887766554 3332 22
Q ss_pred cCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcc
Q 010323 163 MAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALF 223 (513)
Q Consensus 163 ~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 223 (513)
.++ ....+.+..+.+.+.++|..--.++.+..+ .+-|...++...+.++.....++
T Consensus 142 ~Y~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~-~spk~Tlli~l~lP~lfa~~yf~ 197 (409)
T KOG3880|consen 142 RYP----SIVIAGWSSGTGGAGLIGASSYAFLTSWAN-LSPKSTLLIMLFLPALFAFAYFF 197 (409)
T ss_pred cCC----CceeccccCCCCcchhhhhhHHHHHhhhcC-CChhhHHHHHHHHHHHHHHHHHh
Confidence 233 234555556666666666655444544332 45677777766655555554444
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0055 Score=57.78 Aligned_cols=159 Identities=14% Similarity=0.103 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc----cCcchHHHH-hH
Q 010323 285 PQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDK----LGRKVLFLV-GG 359 (513)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~~-~~ 359 (513)
.+.+....+....++ ++..-..|.+.++++.|.+....+ ......-+.+++.+++.|..+|| +||||..+. +.
T Consensus 32 ~~li~v~~ia~Gvqf-~wA~elsy~tPyl~~lGvphk~~S-~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s 109 (498)
T KOG0637|consen 32 RKLISVASIAAGVQF-GWALELSYLTPYLQSLGVPHKWSS-IIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGS 109 (498)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhccccHHHHHcCCCccccc-ccccccccccceecccccccccccccccccccchHHHhh
Confidence 444555555555554 345566778888899999988887 66666678888899999999996 577776554 44
Q ss_pred HHHHHHHHHHHHHHHhhc--CCCCC--CCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhh-HhHHHHHHH
Q 010323 360 IQMLAAQVMIGSIMENQL--GDQGG--FSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSA-GQSINVAVG 434 (513)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~~ 434 (513)
....++++++.+...... .+... .........++...+.-+.......|. -++..|+..++.+.+ +.+....+.
T Consensus 110 ~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~-ra~L~Dl~~~d~~~~~Ans~f~~f~ 188 (498)
T KOG0637|consen 110 LLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC-RALLADLARGDAKKTRANSVFSFFM 188 (498)
T ss_pred HHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH-HHHHHHhccChhhhhccchhHHHHH
Confidence 455555565554432211 11100 001122233333334444444455555 344468877666666 888888888
Q ss_pred HHHHHHHHHHhH
Q 010323 435 FLFTFLIAQTFL 446 (513)
Q Consensus 435 ~~~~~~~~~~~~ 446 (513)
.+|+.++-...+
T Consensus 189 avGnvLGY~~g~ 200 (498)
T KOG0637|consen 189 AVGNVLGYALGS 200 (498)
T ss_pred Hhcceeeeeccc
Confidence 888876544433
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.47 Score=44.90 Aligned_cols=182 Identities=16% Similarity=0.145 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHH
Q 010323 287 LVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQ 366 (513)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 366 (513)
.++..++...-....+..+.+-.+++.+++-.++. +. .......+.+.+...+...+--+...|....++..+.....
T Consensus 19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~-~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~i 96 (406)
T KOG1479|consen 19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SK-NFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAI 96 (406)
T ss_pred HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455566777777777766544444 22 23333334444444444433333322222112222211111
Q ss_pred ---HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHH
Q 010323 367 ---VMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQ 443 (513)
Q Consensus 367 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 443 (513)
..+.+.... .+.......+..+...++.+.+.+...+.+ +.. +..+|++.....++-.+..+.+- .+...
T Consensus 97 l~i~~l~~~~v~----~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~-~G~-a~~~P~~ytqavm~G~a~aG~l~-Sl~~i 169 (406)
T KOG1479|consen 97 LFIVTLDLALVK----TDTWTNGFFLVTLIIVVLLNLANAVVQGSL-YGL-AGLFPSEYTQAVMSGQALAGTLT-SLLRI 169 (406)
T ss_pred HHHHHHHHHhhc----cCCccchhHHHHHHHHHHHhhhhhhhccch-hhh-hhcCCHHHHHHHHhcchhHhHHH-HHHHH
Confidence 111121100 111112233344444445555544443333 445 46678776554443233222221 12222
Q ss_pred HhHHHHHhc--chhhhHHHHHHHHHHHHHHHhhccc
Q 010323 444 TFLAMLCHF--KAGIFFFFGGWVVVMTTFVHFFLPE 477 (513)
Q Consensus 444 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (513)
+.....+.. +...++..+.+..+++++++...|+
T Consensus 170 ~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~ 205 (406)
T KOG1479|consen 170 LTKAAFSDSRTSALIYFITSTVILLLCFVLYLVLPK 205 (406)
T ss_pred HHHHhcCCCCceeehhHHHHHHHHHHHHHHHHHhhc
Confidence 222222222 2334566666666666666665543
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.042 Score=52.11 Aligned_cols=112 Identities=15% Similarity=0.094 Sum_probs=82.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHH-----HHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhh
Q 010323 78 DSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGA-----AFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQ 152 (513)
Q Consensus 78 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~-----~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~ 152 (513)
...+..+...+|.+|..++.--...+ |+ |+..+...+ ...+...+.-+.++.|..++.-+..|+..|..++
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 46778888888888877764432221 33 333333222 2222233344568899999999999999999999
Q ss_pred cccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhc
Q 010323 153 ASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQ 195 (513)
Q Consensus 153 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~ 195 (513)
. ....+.|-.++++|-.+++..+.+-++|..++.+++..+.
T Consensus 355 N--tF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 355 N--TFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred H--HHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8 8888898899999999999999999999999999977654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.19 Score=46.37 Aligned_cols=135 Identities=19% Similarity=0.142 Sum_probs=82.3
Q ss_pred hhHhcHHHHHHhcCCCch--hHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCC
Q 010323 304 VIGFYAPVLFRTIKLSES--TSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQG 381 (513)
Q Consensus 304 ~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (513)
......+.+..+.+.+.. ... .......+...++.++.|.+.||.|||+.+..+......+.....+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--------- 89 (338)
T COG0477 20 LLSPALPLLLSTLSLSSGRLLYG-LLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA--------- 89 (338)
T ss_pred hHHHHHHHHHHHcCCCchhHHHH-HHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC---------
Confidence 334455555566555542 444 66777777888888999999999999977776665533332232222
Q ss_pred CCCcchhHHHHHHHHHHHHhhhccccccccceecccCCh-hhhhhHhHHHHH-HHHHHHHHHHHHhHHHHHh
Q 010323 382 GFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPL-EIRSAGQSINVA-VGFLFTFLIAQTFLAMLCH 451 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 451 (513)
.....+.........+.+.+. ..+....+..|..|. +.|+...+.... ...++..+++.+.+.+...
T Consensus 90 --~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 90 --PNVGLALLLILRLLQGLGGGG-LLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred --ccchHHHHHHHHHHHHhhhHH-HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111233333433334444432 334556666788887 678888888777 4667777777666665554
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.28 Score=47.53 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhh---hhhhHHHHHHHHHHHHHHHHHhhhc------------------hhHHHHHHHHH
Q 010323 83 TSFTSSLYIAGLIASLFASSVTR---AFGRRASILVGGAAFLAGSALGGAA------------------LNIYMLIFGRV 141 (513)
Q Consensus 83 ~~~~s~~~l~~~i~~~~~g~l~d---r~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~ 141 (513)
+.-.-...++..+++.+.+.+++ |+||++.+.++..+..++.++.-.. +++...++.-+
T Consensus 282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~ 361 (461)
T KOG3098|consen 282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF 361 (461)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence 33333444555666666777765 5789999999888888877776543 24667778889
Q ss_pred HHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHHHH
Q 010323 142 LLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLI 190 (513)
Q Consensus 142 l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l 190 (513)
+.|++.+..... .+.++.+.+ +++|..+.++...-..++..++.+.
T Consensus 362 l~G~~D~~~~t~--~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 362 LLGFGDACFNTQ--RYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HHhhHHHHHHHH--HHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999888 888999999 5888888888888777777766555
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.68 E-value=2.5 Score=38.74 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCC
Q 010323 90 YIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAP 165 (513)
Q Consensus 90 ~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~ 165 (513)
.+..+..+++.+.+..++|-|+++.++...+... +..-+=+.+..++-.-.+.|++.+..+.. --+|+++.-.
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~S--kgtYlT~~g~ 140 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWAS--KGTYLTPMGQ 140 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhcccccccccc--CcceecHHHH
Confidence 3444555666668899999999999998888663 33334577888999999999999999988 7778876643
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.25 Score=47.34 Aligned_cols=119 Identities=10% Similarity=-0.086 Sum_probs=78.6
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChh---hhhhHhHH
Q 010323 353 VLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLE---IRSAGQSI 429 (513)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~ 429 (513)
|.+.++.++..++.+++.+....... ......+...+.+.+..+|.+..= |....+.+|.++++ .|.+....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~----~~~~~~~~~~~gL~lia~G~G~~K-~ni~~~~~dq~~~~~~~~~~~~F~~ 76 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSL----PSGIQLGLFYIGLALIAVGTGGIK-PNISPFGADQYDEDDDSRRDSFFNW 76 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC----------CHHHHHHHHHHHHHHCCH-HHHHHHHHHCSSTTTTTHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchh----hhhHHHHHHHHHHHHHHhcccccc-ccHHHHHHHHhcccchhhhhhhHHH
Confidence 45677788888888876655422100 011223456666666777766554 44455557887755 56677788
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHHHHHHHHHHHhhcc
Q 010323 430 NVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLP 476 (513)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (513)
.....++|+.++....+++.++.++...+..+.++.+++++.++.-+
T Consensus 77 fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~ 123 (372)
T PF00854_consen 77 FYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR 123 (372)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence 88999999999999999999999988888888877777777665543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=94.37 E-value=1.2 Score=43.97 Aligned_cols=117 Identities=15% Similarity=0.026 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCC----------CCcchh--------HHHHHHH
Q 010323 334 IGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGG----------FSKGNA--------YLILVLI 395 (513)
Q Consensus 334 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~--------~~~~~~~ 395 (513)
+.++...+..++++++++.+++.+..........++++..+.....-++ .++.-. |......
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 4455566788999999999988776666666666665543221100000 000001 1111111
Q ss_pred HHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHH
Q 010323 396 CVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLC 450 (513)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 450 (513)
+..-.-.....+-+.|..++|..+.++..+-+++....+++|..+++.+.....+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111222233557888999999999999999999999999999999888777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=2 Score=43.14 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=29.2
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHhHHHHH-hcch-hhhHHHHHHHHHHHH
Q 010323 423 RSAGQSINVAVGFLFTFLIAQTFLAMLC-HFKA-GIFFFFGGWVVVMTT 469 (513)
Q Consensus 423 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~ 469 (513)
.+...|-.+....+|+.+|+.+.+.+.- ..|. ...+..+.+.+++++
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3566777788888888888888877654 4552 333444444444443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.86 E-value=4.2 Score=39.56 Aligned_cols=119 Identities=12% Similarity=-0.070 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCC-----------Ccc--------hhHHHHHH
Q 010323 334 IGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGF-----------SKG--------NAYLILVL 394 (513)
Q Consensus 334 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~--------~~~~~~~~ 394 (513)
++++..++..++.+++.+.+++...........+++++..+......++. +.. +.|.....
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 56677788889999999999888777777776666666554221111111 100 01222222
Q ss_pred HHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhc
Q 010323 395 ICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHF 452 (513)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 452 (513)
....-.-.....+-+.+..++|....++..+-+++.+...+++..+++.+..++..+.
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~ 211 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHR 211 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 2222222223333455677789999999999999999999999999998888877643
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=93.34 E-value=1.5 Score=42.93 Aligned_cols=89 Identities=19% Similarity=0.265 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhcccccc
Q 010323 330 VTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPL 409 (513)
Q Consensus 330 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (513)
...+..++..+....+..|+..|.-+..+.++..+..+......... .......+..+...++.+.+.+..-+..
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~-----~~~~~~f~~~~~~v~~~g~~~~~~q~s~ 127 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQ-----TSETGFFVTTMASVVIINSGMALLQGSL 127 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeec-----CCcchHHHHHHHHHHHHHhhhhhhcccc
Confidence 34444555555555666676654333334333222222222211100 0011233444444555555544443333
Q ss_pred ccceecccCChhhhhh
Q 010323 410 GFLVPSEIFPLEIRSA 425 (513)
Q Consensus 410 ~~~~~~~~~p~~~~~~ 425 (513)
..+ +..+|++..+.
T Consensus 128 -~gl-a~~fp~~~~~a 141 (437)
T TIGR00939 128 -FGL-AGVFPSTYSSA 141 (437)
T ss_pred -hhh-cccCCHHHHHH
Confidence 555 46788765443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.17 Score=44.42 Aligned_cols=59 Identities=24% Similarity=0.157 Sum_probs=38.2
Q ss_pred hHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHH
Q 010323 305 IGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLA 364 (513)
Q Consensus 305 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 364 (513)
..-|.-++.+.+|+...+.+ ..........++...+.|-++||.|||+..+.-.+...+
T Consensus 56 QgPYvYyLYstYgFgkG~Ig-qLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiL 114 (454)
T KOG4332|consen 56 QGPYVYYLYSTYGFGKGDIG-QLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYIL 114 (454)
T ss_pred cCceeeeeehhcCccCCccc-eeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHH
Confidence 33344445577888887777 444444455566667788899999999876544433333
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=91.58 E-value=1.8 Score=42.14 Aligned_cols=80 Identities=14% Similarity=0.195 Sum_probs=40.2
Q ss_pred HHHHHHhhhcchhhhHhcHHHHHHh--cCCCchhHHH--HHHHHHHHHHHHHHHHHHHhhhccCcchHHHHh-HHHHHHH
Q 010323 291 ILIPFFLQVTGINVIGFYAPVLFRT--IKLSESTSLL--MSAVVTGGIGTLSTIISMILVDKLGRKVLFLVG-GIQMLAA 365 (513)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~-~~~~~~~ 365 (513)
+.+.++.+.........-.|.++++ .+.+-.+.+. +..-++.+=-.-+.++=...++|+||||..++- -.++++.
T Consensus 5 L~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~ 84 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGIL 84 (544)
T ss_pred HHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHH
Confidence 3344555655555444567888877 5555444431 122233332222333334556688998876543 3333443
Q ss_pred HHHHH
Q 010323 366 QVMIG 370 (513)
Q Consensus 366 ~~~~~ 370 (513)
++.+.
T Consensus 85 m~~l~ 89 (544)
T PF13000_consen 85 MLYLS 89 (544)
T ss_pred HHHHH
Confidence 44433
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.49 E-value=18 Score=36.90 Aligned_cols=163 Identities=11% Similarity=0.028 Sum_probs=93.4
Q ss_pred HhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHhHHHHHHHHHHHHHHHHhhcC-C----
Q 010323 306 GFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKL-GRKVLFLVGGIQMLAAQVMIGSIMENQLG-D---- 379 (513)
Q Consensus 306 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---- 379 (513)
.....++...++.+...+. -....+........+.+++++|.+ ||-+.+.++..+..++..++......... +
T Consensus 58 ~nlv~ylt~~~~~~~~~aa-~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~ 136 (571)
T KOG1237|consen 58 SNLVTYLTLELHASGGGAA-NNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCK 136 (571)
T ss_pred hHHHHHHHHHhccchHHHH-HHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Confidence 4555555667777776666 566666677777888999999985 88888888888888887766655444310 0
Q ss_pred ---CC-CCCcch---hHHHHHHHHHHHHhhhccccccccceecccCC----hhhhh--hHhHHHHHHHHHHHHHHHHHhH
Q 010323 380 ---QG-GFSKGN---AYLILVLICVYVAGFAVSWGPLGFLVPSEIFP----LEIRS--AGQSINVAVGFLFTFLIAQTFL 446 (513)
Q Consensus 380 ---~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~--~~~g~~~~~~~~~~~~~~~~~~ 446 (513)
.+ ..+... .......+.+...|.+. .-+.....-+|.++ .+.+. .-+.......+.|..+...+..
T Consensus 137 ~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg-~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~v 215 (571)
T KOG1237|consen 137 FKPGGNVCESPSKLQLAVLYGALYLIALGAGG-IRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLV 215 (571)
T ss_pred CCCCCCcccCcchHHHHHHHHHHHHheeccCC-CCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHH
Confidence 00 011111 11222222222223332 23444555567776 22223 4455666677788888877777
Q ss_pred HHHHhcchhhhHHHHHHHHHHHHH
Q 010323 447 AMLCHFKAGIFFFFGGWVVVMTTF 470 (513)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~ 470 (513)
+..++.++..-+.....+.+.+++
T Consensus 216 yiq~~~~w~lgf~i~~~~~~lai~ 239 (571)
T KOG1237|consen 216 YIQDNVGWKLGFGIPTVLNALAIL 239 (571)
T ss_pred hhhhcccceeeccHHHHHHHHHHH
Confidence 777777765444443333333333
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.93 E-value=7.5 Score=36.64 Aligned_cols=78 Identities=17% Similarity=0.309 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHH--HHHHHHHHHHHHHHHHHHHhhh-----ccCcchHHHH-hH
Q 010323 288 VMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLL--MSAVVTGGIGTLSTIISMILVD-----KLGRKVLFLV-GG 359 (513)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d-----~~g~~~~~~~-~~ 359 (513)
+..+.+.+..+...+.... ..|.+++..+.|-...+. +..-++. -.++...++| |+||||..++ +.
T Consensus 33 illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P~s-----LKllWaPiVDs~y~k~~GrrksWvvp~q 106 (510)
T KOG3574|consen 33 ILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWPFS-----LKLLWAPIVDSVYSKRFGRRKSWVVPCQ 106 (510)
T ss_pred HHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhHHH-----HHHHHHhhhHHHHHHhhccccceeeehH
Confidence 4444455566666666666 889999877766554441 1222222 2345556666 9999886544 33
Q ss_pred HHHHHHHHHHHH
Q 010323 360 IQMLAAQVMIGS 371 (513)
Q Consensus 360 ~~~~~~~~~~~~ 371 (513)
.+.+..+..+..
T Consensus 107 ~llG~~mllLs~ 118 (510)
T KOG3574|consen 107 YLLGLFMLLLSY 118 (510)
T ss_pred HHHHHHHHHHhh
Confidence 444444444433
|
|
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.92 E-value=6.9 Score=34.20 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhhccCcchHHHHhHHHHHHH
Q 010323 336 TLSTIISMILVDKLGRKVLFLVGGIQMLAA 365 (513)
Q Consensus 336 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 365 (513)
.++.+-+-+++.|+..|++.+.+.++..+.
T Consensus 254 ~lAVigGk~lAskIS~rtVt~~ggi~Fi~F 283 (294)
T KOG2881|consen 254 GLAVIGGKYLASKISVRTVTLIGGILFIIF 283 (294)
T ss_pred HHHHhhhHHHhhhheeEEEEEecchhHHHH
Confidence 333334446778888888777766655544
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.36 E-value=3.8 Score=38.28 Aligned_cols=48 Identities=10% Similarity=0.024 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHH
Q 010323 392 LVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFL 440 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 440 (513)
++.....-.|.-..-..+ ..+..|..|.+.|..+.|+-|........+
T Consensus 390 ~agVaaaR~GLW~fDlAV-tqimQe~VpEseR~vv~gvqnsL~~~ldll 437 (503)
T KOG2601|consen 390 FAGVAAARLGLWMFDLAV-TQIMQETVPESERCVVFGVQNSLNSALDLL 437 (503)
T ss_pred HHHHHHHHhhHHhccHHH-HHHHHHhcchhhhhhhHhHHHHHHHHHHHH
Confidence 333333444443332233 344489999999999999999988876544
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.22 E-value=2.6 Score=31.02 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=33.6
Q ss_pred ChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHH
Q 010323 419 PLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGW 463 (513)
Q Consensus 419 p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (513)
.++.++.+.++--..-.+++.+....+||+.|++-...+|.+.++
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~ 80 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVF 80 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 345678888888888889999999999999999864433333333
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.19 E-value=37 Score=32.16 Aligned_cols=55 Identities=13% Similarity=0.020 Sum_probs=30.8
Q ss_pred HhcHHHHHHhcCCC-chhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHH
Q 010323 306 GFYAPVLFRTIKLS-ESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQ 361 (513)
Q Consensus 306 ~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 361 (513)
.+-...++.+.+.+ -...+ ....+-+....+...+.|...|+..|+|++.....+
T Consensus 47 ~F~VsL~M~~L~gnsl~lvA-vyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~l 102 (503)
T KOG2601|consen 47 EFSVSLFMILLGGNSLLLVA-VYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLL 102 (503)
T ss_pred HHHHHHHHHHHcCceehhHH-HHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhh
Confidence 33344455554432 22222 344444455556666777888999998876554443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 513 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 3e-32 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 513 | |||
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 6e-04 |
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 6e-04
Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 29/155 (18%)
Query: 86 TSSLYIAGL-IASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLG 144
Y+ ++ LF ++ GRR ILVG + F+ + + ++ +LI + G
Sbjct: 40 VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG 99
Query: 145 VGIGFANQASSVPLYLSEMAPPR-----HRGAFNIGY-ELCTAIGILAASLINYGTQKIK 198
+G G + PR + + + L A LI
Sbjct: 100 MGTGVGGVMA--------RTLPRDLYERTQLRHANSLLNMGILVSPLLAPLI-------- 143
Query: 199 GGW-----GWR-ISLAMAAAPALILTLGALFLPET 227
GG WR L + A + A ++PET
Sbjct: 144 GGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPET 178
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 513 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.95 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.42 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.41 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.33 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.3 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.28 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.19 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.1 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-48 Score=386.82 Aligned_cols=449 Identities=26% Similarity=0.464 Sum_probs=352.3
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 010323 20 TSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLF 99 (513)
Q Consensus 20 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~ 99 (513)
+++.+.+++++++|.+.+|||.++++.+ ++.+.++|..+. ..+.+.+.++.|++.+++.+|..+|+++
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~--~~~~~~~~~~~~----------~~~~~~~~~~~g~~~s~~~~G~~iG~~~ 74 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGT--VESLNTVFVAPQ----------NLSESAANSLLGFCVASALIGCIIGGAL 74 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGT--HHHHHHHHTGGG----------CCCHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCC----------CCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888999999999999998875 445555443221 1122346788999999999999999999
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHHHHHhh------------------hchhHHHHHHHHHHHHhhhhhhhhcccccceee
Q 010323 100 ASSVTRAFGRRASILVGGAAFLAGSALGG------------------AALNIYMLIFGRVLLGVGIGFANQASSVPLYLS 161 (513)
Q Consensus 100 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~ 161 (513)
+|+++||+|||++++++.+++.+++++++ +++|++.++++|+++|++.|...+. .+.+++
T Consensus 75 ~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~--~~~~i~ 152 (491)
T 4gc0_A 75 GGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASML--SPMYIA 152 (491)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 99999999999999999999999999998 4789999999999999999999999 999999
Q ss_pred ccCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccC-----CccchHHHHHhhHHHHHHHHHhhcccCCChHHHHHhCC
Q 010323 162 EMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIK-----GGWGWRISLAMAAAPALILTLGALFLPETPNSIIQRSN 236 (513)
Q Consensus 162 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~ 236 (513)
|+.|+++|++..++.+.+..+|.++++.++....... ....||+.+.+..++.++..+..+++||+|+|+..+++
T Consensus 153 E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~ 232 (491)
T 4gc0_A 153 ELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGK 232 (491)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTC
T ss_pred hhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCc
Confidence 9999999999999999999999999999887665432 23579999999999998888888899999999999988
Q ss_pred cHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHhc
Q 010323 237 DLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTI 316 (513)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (513)
.+++++.+++..+.+..+.+..+.++....+++... .... ...++.........+.+..+...+..|.+.+.+..
T Consensus 233 -~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (491)
T 4gc0_A 233 -QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGG-RLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTL 307 (491)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhh-HHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhc
Confidence 788888877776554433333333222222222111 1111 22344556666667777778888889999999998
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHH
Q 010323 317 KLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLIC 396 (513)
Q Consensus 317 g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (513)
+.+..... ......++..+++.++++++.||+|||+.+..+...+.++.+.+...... ....+..+...+
T Consensus 308 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~ 377 (491)
T 4gc0_A 308 GASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT---------QAPGIVALLSML 377 (491)
T ss_dssp SCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT---------TCCHHHHHHHHH
T ss_pred CCCccchh-hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc---------ccchHHHHHHHH
Confidence 88877766 67777888999999999999999999999999988888887776655432 233445555566
Q ss_pred HHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhc------c-hhhhHHHHHHHHHHHH
Q 010323 397 VYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHF------K-AGIFFFFGGWVVVMTT 469 (513)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~ 469 (513)
++..+++.++.++.+.+.+|++|++.|+++.|+.+..+++++++++.+.+.+.+.. + ...++++++++++..+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i 457 (491)
T 4gc0_A 378 FYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAAL 457 (491)
T ss_dssp HHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 66667777778888888899999999999999999999999999988887664432 2 2356677888888888
Q ss_pred HHHhhcccCCCCCHHHHHHHhccccccc
Q 010323 470 FVHFFLPETKNVPIEQMDEVWGEHWFWK 497 (513)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (513)
+.++++||||++++||+|+.++++.+++
T Consensus 458 ~~~~~~PETkg~tLeei~~~f~~~~~~~ 485 (491)
T 4gc0_A 458 FMWKFVPETKGKTLEELEALWEPETKKT 485 (491)
T ss_dssp HHHHHCCCCTTCCHHHHGGGTC------
T ss_pred HHHheecCCCCCCHHHHHHHhCCCCccc
Confidence 8889999999999999998887665433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=320.85 Aligned_cols=399 Identities=14% Similarity=0.031 Sum_probs=292.3
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 010323 20 TSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLF 99 (513)
Q Consensus 20 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~ 99 (513)
+++++......+++.+..+++...+++. .|.+.+++ .+..+.+++.+++.++..+++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~ 81 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALA--------------------MPYLVEQG-FSRGDLGFALSGISIAYGFSKFI 81 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHH--------------------HHHTTSST-TCSSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHh
Confidence 4455667777788888888887776554 34456677 89999999999999999999999
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHHHHHhhh----chhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhH
Q 010323 100 ASSVTRAFGRRASILVGGAAFLAGSALGGA----ALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIG 175 (513)
Q Consensus 100 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 175 (513)
+|+++||+|||++++++.++.+++.+++++ +++++.++++|+++|++.+...+. ..+++.|++|+++|++++++
T Consensus 82 ~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~--~~~~i~~~~~~~~r~~~~~~ 159 (451)
T 1pw4_A 82 MGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPP--CGRTMVHWWSQKERGGIVSV 159 (451)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHH--HHHHHHTTCTTTHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccch--HHHHHHHHCCchhhhHHHHH
Confidence 999999999999999999999999999999 999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCccc-hHHHHHhhHHHHHHHHHh-hcccCCChHHHHHhCCcHHHHHHHHHHHhCCCc
Q 010323 176 YELCTAIGILAASLINYGTQKIKGGWG-WRISLAMAAAPALILTLG-ALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDD 253 (513)
Q Consensus 176 ~~~~~~~G~~~~~~l~~~~~~~~~~~~-wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (513)
...+..+|.+++|.+++.+.+. .+ ||+.|++.+++.++..+. .+++||+|++...+++ ++. .+.
T Consensus 160 ~~~~~~~g~~~g~~~~~~l~~~---~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~ 225 (451)
T 1pw4_A 160 WNCAHNVGGGIPPLLFLLGMAW---FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI--EEY---------KND 225 (451)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHH---TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC--TTT---------CCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh--hhh---------ccc
Confidence 9999999999999998876543 46 999999999887776554 4558888753211111 000 000
Q ss_pred hHHHHHHHHHHHHhhhhcCCcchhh-cccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHh-cCCCchhHHHHHHHHH
Q 010323 254 VEAEFDDLIKASSIAKTVNHPFKKI-IQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRT-IKLSESTSLLMSAVVT 331 (513)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~ 331 (513)
.+.+ . +++++++.+.++. .+...+++.++...+..++..........+.|.++++ .|.+..+.+ ......
T Consensus 226 ~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~ 297 (451)
T 1pw4_A 226 YPDD---Y----NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSS-WAYFLY 297 (451)
T ss_dssp --------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHH-HHHHHH
T ss_pred cccc---c----hhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHH
Confidence 0000 0 0001111222222 1222334445555555566666667778888988877 788888888 788888
Q ss_pred HHHHHHHHHHHHHhhhcc--CcchHHHHhHHHHH-HHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccc
Q 010323 332 GGIGTLSTIISMILVDKL--GRKVLFLVGGIQML-AAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGP 408 (513)
Q Consensus 332 ~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (513)
.++.+++.++.+++.||+ ++|+.+..+..+.. ++.+++... +..+.+......++.+.+.+... +
T Consensus 298 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~~-~ 365 (451)
T 1pw4_A 298 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-----------PAGNPTVDMICMIVIGFLIYGPV-M 365 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-----------CTTCHHHHHHHHHHHHHHHTHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-----------cccCHHHHHHHHHHHHHHHhchH-H
Confidence 899999999999999999 99988877666655 333332221 11244555555555655554443 3
Q ss_pred cccceecccCChhhhhhHhHHHHHHHHH-HHHHHHHHhHHHHHhcchhhhHHHHHHHHHHHHHHHhhc
Q 010323 409 LGFLVPSEIFPLEIRSAGQSINVAVGFL-FTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFL 475 (513)
Q Consensus 409 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (513)
....+..|.+|++.|+++.|+.+...++ +..++|.+.+.+.+..++...+...+++.+.+.+..+..
T Consensus 366 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 366 LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3355668999999999999999999999 999999999999999886655554444444444444433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-37 Score=298.94 Aligned_cols=373 Identities=10% Similarity=0.093 Sum_probs=275.3
Q ss_pred HHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhHHH
Q 010323 24 VLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSV 103 (513)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l 103 (513)
+....++++..+..+++....++. .|.+.+++|++..+.+++.+.+.+++.++++++|++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l 84 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDIL--------------------LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGIL 84 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH--------------------HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344444566667777777665544 344567778999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHh---hhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHH
Q 010323 104 TRAFGRRASILVGGAAFLAGSALG---GAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCT 180 (513)
Q Consensus 104 ~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 180 (513)
+||+|||++++++.++.+++.+++ +++++++.+++.|++.|++.+...+. ..+++.|++|+++|++++++.+.+.
T Consensus 85 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~--~~~~~~~~~~~~~r~~~~~~~~~~~ 162 (438)
T 3o7q_A 85 MKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETA--ANPFVTVLGPESSGHFRLNLAQTFN 162 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHSSCSTTHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhh--HHHHHHHHcCchhHHHHHHHHHHHH
Confidence 999999999999999999999999 88999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc-ccCCc----------------------cchHHHHHhhHHHHHHHHHhhcc--cCCChHHHHHhC
Q 010323 181 AIGILAASLINYGTQ-KIKGG----------------------WGWRISLAMAAAPALILTLGALF--LPETPNSIIQRS 235 (513)
Q Consensus 181 ~~G~~~~~~l~~~~~-~~~~~----------------------~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~ 235 (513)
.+|..+++.+++.+. ...+. .+||+.|++.+++.++..+..++ .||+++.. +
T Consensus 163 ~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~ 239 (438)
T 3o7q_A 163 SFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---H 239 (438)
T ss_dssp HHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---C
T ss_pred HHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---c
Confidence 999999999998876 43221 01999998877766665544333 56654210 0
Q ss_pred CcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHH-HH
Q 010323 236 NDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVL-FR 314 (513)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 314 (513)
++ +++++.+.++++.++++ .++...+..++..........+.|.+ ++
T Consensus 240 ~~----------------------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (438)
T 3o7q_A 240 SD----------------------------AKQGSFSASLSRLARIR----HWRWAVLAQFCYVGAQTACWSYLIRYAVE 287 (438)
T ss_dssp CC----------------------------SSTTSHHHHHHHHTTCS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc----------------------------ccccchhhhHHHHHhCh----HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 00 00001112233444332 23333344444444556667788888 77
Q ss_pred hc-CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHH
Q 010323 315 TI-KLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILV 393 (513)
Q Consensus 315 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (513)
+. |.+..+.+ .......++.+++.++.+++.||++||+.+..+..+..++.+++... ++.+ ...
T Consensus 288 ~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~ 352 (438)
T 3o7q_A 288 EIPGMTAGFAA-NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-------------GGHV-GLI 352 (438)
T ss_dssp HSTTCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------------CHHH-HHH
T ss_pred ccCCcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-------------CCcH-HHH
Confidence 75 88888888 78888889999999999999999999999988887777766555442 2222 233
Q ss_pred HHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc-hhhhHHHHHHHHHHHHHH
Q 010323 394 LICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK-AGIFFFFGGWVVVMTTFV 471 (513)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 471 (513)
...+.+++.+..+ +....+..|.+|++ ++.+.++.. .+.+++.++|.+.|.+.+..+ +...+.+.+++.+...+.
T Consensus 353 ~~~~~g~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 353 ALTLCSAFMSIQY-PTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHHHHHHTTHH-HHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 4455556655554 44566657888866 888888777 677999999999999999988 665555554444444333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-32 Score=268.05 Aligned_cols=394 Identities=14% Similarity=0.086 Sum_probs=253.6
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhh-hhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhh
Q 010323 71 ISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRA-FGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGF 149 (513)
Q Consensus 71 i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~ 149 (513)
+++|+|++..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.+++.|+++|++.+.
T Consensus 45 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 124 (491)
T 4aps_A 45 STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGF 124 (491)
T ss_dssp HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHH
T ss_pred chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 356689999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred hhhcccccceeeccCCCCC--ccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhccc-CC
Q 010323 150 ANQASSVPLYLSEMAPPRH--RGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFL-PE 226 (513)
Q Consensus 150 ~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e 226 (513)
..+. ..+++.|++|+++ |+.+.++++.+.++|..++|.+++.+.+. .+||+.|++.++..++..+..++. |+
T Consensus 125 ~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 125 LKPN--VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---AGYHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp HHHH--HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccch--HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999 9999999999988 67788889999999999999999887654 579999999877666655443322 21
Q ss_pred ChH---HHHHhCCcHHHHHHHHHH----------------HhCCCchHHHHHH--HHH-------HHHhhhhcCCcchhh
Q 010323 227 TPN---SIIQRSNDLQRAKQMLQR----------------IRGTDDVEAEFDD--LIK-------ASSIAKTVNHPFKKI 278 (513)
Q Consensus 227 ~p~---~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~ 278 (513)
..+ ....+..+.++.++..+. ..+..+.+..... ... .....++.+.+..+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 278 (491)
T 4aps_A 200 TLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTE- 278 (491)
T ss_dssp TCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred cccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHH-
Confidence 100 000011112232222221 1111111110000 000 00000000000000
Q ss_pred cccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHH-
Q 010323 279 IQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRT-IKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFL- 356 (513)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~- 356 (513)
++. ........+........+.....+.+.+.++ .+.+....+ .......+..+++.++.+++.||++||+...
T Consensus 279 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~ 354 (491)
T 4aps_A 279 -HLR--VVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVS-WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSP 354 (491)
T ss_dssp ------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSG-GGTTHHHHHHHHHHHHHHHHHHHTTTC---CH
T ss_pred -HHH--HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHH-HHhccchHHHHHHHHHHHHHHHHHhccCCCch
Confidence 010 0111222222222333344455566767665 455544445 5666777888888999999999999986544
Q ss_pred ----HhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHH
Q 010323 357 ----VGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVA 432 (513)
Q Consensus 357 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 432 (513)
.+..+..++.+++........ ...+.+.+......++.+++.+... +....++.|.+|++.|+++.|+.+.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~ 429 (491)
T 4aps_A 355 TKFAVGLMFAGLSFLLMAIPGALYG----TSGKVSPLWLVGSWALVILGEMLIS-PVGLSVTTKLAPKAFNSQMMSMWFL 429 (491)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHCC----CCTTCCTHHHHHHHHHHHHHHHTTT-THHHHHHHHHTTTTCSSSSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC----CCCCccHHHHHHHHHHHHHHHHHHh-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555555555555444321110 0011244555566666666665544 4446677899999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhcchhhhHHHHHHHHHHHHHHHhhcccCC
Q 010323 433 VGFLFTFLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (513)
...+|.++++.+.+.+.+......+...++++.+..++.++..++.+
T Consensus 430 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 430 SSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988877655455566666666665555555544433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=271.00 Aligned_cols=358 Identities=15% Similarity=0.132 Sum_probs=265.1
Q ss_pred HHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhh
Q 010323 29 VAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFG 108 (513)
Q Consensus 29 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G 108 (513)
+++++.+..+++...+++. .|.+.+++|.+..+.+++.+.+.++..++++++|+++||+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g 63 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPA--------------------IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVG 63 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------------------HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHhhh--------------------hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455556666666665544 23446778899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccchhhHHHHHHHHHHHHHH
Q 010323 109 RRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAAS 188 (513)
Q Consensus 109 rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 188 (513)
||+++..+..+.+++.++.+++++++.+++.|++.|++.+...+. ..+++.|++|+++|++++++...+..+|..++|
T Consensus 64 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 141 (375)
T 2gfp_A 64 RRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVM--ARTLPRDLYERTQLRHANSLLNMGILVSPLLAP 141 (375)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHhhhcccCCccchHHHHHhhHHHHHHHHH-hhcccCCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Q 010323 189 LINYGTQKIKGGWGWRISLAMAAAPALILTL-GALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSI 267 (513)
Q Consensus 189 ~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (513)
.+++.+.+. .+||+.|++.+++.++..+ ..+++||++++. ++
T Consensus 142 ~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------------------------------- 184 (375)
T 2gfp_A 142 LIGGLLDTM---WNWRACYLFLLVLCAGVTFSMARWMPETRPVD---AP------------------------------- 184 (375)
T ss_dssp HHHHHSSCH---HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT---CC-------------------------------
T ss_pred HHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC---cc-------------------------------
Confidence 998887653 5799999999888877766 445588876320 00
Q ss_pred hhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 010323 268 AKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRT-IKLSESTSLLMSAVVTGGIGTLSTIISMILV 346 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 346 (513)
+++.+.++++.++ ++.++...+..+...........+.|.+.++ .|.++.+.+ .......++.+++.++.+++.
T Consensus 185 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~l~ 259 (375)
T 2gfp_A 185 RTRLLTSYKTLFG----NSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVS-ILFILPIPAAFFGAWFAGRPN 259 (375)
T ss_dssp CCCTTTCSTHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHH-HHHHTHHHHHHHHHHHHHTTT
T ss_pred cccHHHHHHHHhc----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 0111223333332 3334444444444555556666777777665 777777777 778888899999999999999
Q ss_pred hccCcchHHHHhHHH-HHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhh
Q 010323 347 DKLGRKVLFLVGGIQ-MLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSA 425 (513)
Q Consensus 347 d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 425 (513)
||.+++ ...+... ...+...+..... ..++.+......++.+++.+... +....+..|..| +.|++
T Consensus 260 ~r~~~~--~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p-~~~g~ 326 (375)
T 2gfp_A 260 KRFSTL--MWQSVICCLLAGLLMWIPDWF---------GVMNVWTLLVPAALFFFGAGMLF-PLATSGAMEPFP-FLAGT 326 (375)
T ss_dssp THHHHH--HHHHHHHHHHTSSSSSHHHHH---------HHHHHHHHHHHHHHHHHHHHHTS-STTHHHHHTHHH-HHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHhhh---------ccccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHhCC-cccch
Confidence 998872 2222222 2222221111110 11244555556666666666554 444566689888 89999
Q ss_pred HhHHHHHHHHHHHHHHHHHhHHHHHhcchhhhHHHHHH
Q 010323 426 GQSINVAVGFLFTFLIAQTFLAMLCHFKAGIFFFFGGW 463 (513)
Q Consensus 426 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (513)
+.|+.+....+|..++|.+.+.+.+..++...+...++
T Consensus 327 ~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 327 AGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 99999999999999999999999887666555544433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=245.50 Aligned_cols=141 Identities=15% Similarity=0.170 Sum_probs=128.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHHhhhh-hhHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHhhhhhhhhcc
Q 010323 77 FDSQLLTSFTSSLYIAGLIASLFASSVTRAF-GRRASILVGGAAFLAGSALGGAAL-NIYMLIFGRVLLGVGIGFANQAS 154 (513)
Q Consensus 77 ~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~Gi~~~~~~~~~ 154 (513)
++..+.+++.+.+.++..++++++|+++||+ |||+++.++.++.+++.+++++++ +++.+++.|++.|++.+...+.
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~- 129 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPL- 129 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHH-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchh-
Confidence 8999999999999999999999999999999 999999999999999999999999 9999999999999999999998
Q ss_pred cccceeeccCCCCCccchhhH---HHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhc
Q 010323 155 SVPLYLSEMAPPRHRGAFNIG---YELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGAL 222 (513)
Q Consensus 155 ~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 222 (513)
..+++.|++|+++|+++.+. ...+.++|..++|.+++.+.+. .+||+.|++.+++.++..+..+
T Consensus 130 -~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 130 -VSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---FGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp -HHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---SCHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876666 8899999999999998877653 5799999998887766555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-29 Score=240.03 Aligned_cols=355 Identities=11% Similarity=0.040 Sum_probs=215.6
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHH---HHhhhchhH-HHHHHHHHHHHhhh
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGS---ALGGAALNI-YMLIFGRVLLGVGI 147 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~-~~l~~~r~l~Gi~~ 147 (513)
++++|+|..+.|++.+.+.++..++++++|+++||+|||++++++..+++++. ..+.+++.. ..+...+++.|++.
T Consensus 35 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (417)
T 2cfq_A 35 HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL 114 (417)
T ss_dssp HTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSST
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999888775532 222333322 12345566666665
Q ss_pred hhhhhcccccceeeccCCC--CCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcccC
Q 010323 148 GFANQASSVPLYLSEMAPP--RHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALFLP 225 (513)
Q Consensus 148 ~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 225 (513)
+...+. ....+.++.++ ++|+...+.......+|..++|.+++.+.+ .+||+.|++.+++.++..+..++.+
T Consensus 115 g~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~ 188 (417)
T 2cfq_A 115 GFCFNA--GAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFAK 188 (417)
T ss_dssp THHHHT--THHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTTHHHHSCSSC
T ss_pred HHHHhh--hHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHHHHHcC
Confidence 555544 44444445443 355777777777778889999988887764 3699999988777655555555544
Q ss_pred CChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCC---cchhhcccCchhHHHHHHHHHHHhhhcch
Q 010323 226 ETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNH---PFKKIIQRKYRPQLVMAILIPFFLQVTGI 302 (513)
Q Consensus 226 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (513)
|+++. +.+ .++ +. ++++++. ++++.+++ +.++...+..+.....+
T Consensus 189 ~~~~~---~~~-~~~---------~~---------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 236 (417)
T 2cfq_A 189 TDAPS---SAT-VAN---------AV---------------GANHSAFSLKLALELFRQ----PKLWFLSLYVIGVSCTY 236 (417)
T ss_dssp CCCSC---SSC-SSS---------SS---------------SSCCCCCCHHHHHHHTTC----HHHHHHHHHHHHHHHHH
T ss_pred ccccc---ccc-ccc---------cc---------------ccccccccHHHHHHHhcC----CchhhHHHHHHHHHHHH
Confidence 33210 000 000 00 0000011 11223322 22222222222222233
Q ss_pred hhhHhcHHHHHHhc-CC---CchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcC
Q 010323 303 NVIGFYAPVLFRTI-KL---SESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLG 378 (513)
Q Consensus 303 ~~~~~~~~~~~~~~-g~---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (513)
.....+.|.++++. +. +....+ .......+..+++.++.++++||++||+.+..+..+..+..+.+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~------ 309 (417)
T 2cfq_A 237 DVFDQQFANFFTSFFATGEQGTRVFG-YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA------ 309 (417)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh------
Confidence 34444566666543 21 122223 55666667788899999999999999998887776666654443221
Q ss_pred CCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHH-HHHHHHHHHHHHHHhHHHHHhcchhhh
Q 010323 379 DQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSIN-VAVGFLFTFLIAQTFLAMLCHFKAGIF 457 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (513)
++.+.......+.+.+..... +....+++|.+|++.|+++.++. +....+|+.++|.+.|.+.++.++...
T Consensus 310 -------~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~ 381 (417)
T 2cfq_A 310 -------TSALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGA 381 (417)
T ss_dssp -------CSHHHHHHHTTHHHHHHHHHH-HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHH
T ss_pred -------ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHH
Confidence 233333333333444333222 22355678999999999999984 778889999999999999998775544
Q ss_pred HHH-HHHHHHHHHHHHhhcccCC
Q 010323 458 FFF-GGWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 458 ~~~-~~~~~~~~~~~~~~~~~~~ 479 (513)
+.. +++..+..++.+...||++
T Consensus 382 f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 382 YLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCC
Confidence 444 4333444344344445443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=126.99 Aligned_cols=154 Identities=14% Similarity=0.027 Sum_probs=123.6
Q ss_pred HHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHH
Q 010323 287 LVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQ 366 (513)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 366 (513)
.+....+.++.............|.+.+++|.+..+.+ ...+...++..++.++.|+++||+|||+.+..+..+..++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 105 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHH-HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 34444445555555556777788888899999999988 88889999999999999999999999999999999988888
Q ss_pred HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhH
Q 010323 367 VMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFL 446 (513)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~ 446 (513)
++...... .++.+..++..++.+++.+...... ..++.|.+|++.|+.+.++.+....+|..+++.+.+
T Consensus 106 ~~~~~~~~----------~~~~~~l~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 174 (438)
T 3o7q_A 106 ALFWPAAE----------IMNYTLFLVGLFIIAAGLGCLETAA-NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_dssp HHHHHHHH----------TTCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccc----------cccHHHHHHHHHHHHhhHHHhhhhH-HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87733211 1456677777788888777665444 566689999999999999999999999999999999
Q ss_pred HHH-Hhc
Q 010323 447 AML-CHF 452 (513)
Q Consensus 447 ~~~-~~~ 452 (513)
.+. +..
T Consensus 175 ~l~~~~~ 181 (438)
T 3o7q_A 175 SLILSNV 181 (438)
T ss_dssp HHHHTSS
T ss_pred HHHhccc
Confidence 988 444
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=8.9e-13 Score=128.97 Aligned_cols=184 Identities=13% Similarity=0.061 Sum_probs=138.8
Q ss_pred hHHHHHHHHHHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHH
Q 010323 285 PQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLA 364 (513)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 364 (513)
++.+....+..+.............|.+.++. .+..+.+ ...+...++..++.++.|+++||+|||+.+..+..+..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHH-HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence 34455555555555555566677788888888 8888888 888889999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHH
Q 010323 365 AQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQT 444 (513)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~ 444 (513)
+.++..+.... .++.+..++..++.+++.+...+ ....++.|.+|++.|+.+.|+.+....+|..++|.+
T Consensus 105 ~~~~~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 174 (451)
T 1pw4_A 105 VMLFMGFVPWA---------TSSIAVMFVLLFLCGWFQGMGWP-PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL 174 (451)
T ss_dssp HHHHHHHCHHH---------HSSSSHHHHHHHHHHHHHHHTHH-HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHhhhhc---------cccHHHHHHHHHHHHHHhhhccc-hHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88877661100 04556667777777777765544 445666899999999999999999999999999999
Q ss_pred hHHHHHhcc-hhhhHHH-HHHHHHHHHHHHhhcccCCC
Q 010323 445 FLAMLCHFK-AGIFFFF-GGWVVVMTTFVHFFLPETKN 480 (513)
Q Consensus 445 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 480 (513)
.+.+.+..+ +...+.. +++..+..++..+..||+++
T Consensus 175 ~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 175 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 999888887 6654444 44444555555566776543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.7e-12 Score=125.30 Aligned_cols=170 Identities=14% Similarity=0.094 Sum_probs=126.2
Q ss_pred HHHHHHHHHhhhcchhhhHhcHHHHHHh------cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHhHH
Q 010323 288 VMAILIPFFLQVTGINVIGFYAPVLFRT------IKLSESTSLLMSAVVTGGIGTLSTIISMILVDK-LGRKVLFLVGGI 360 (513)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~ 360 (513)
++...+..+.....++....+.+.++++ .|.+..+.+ ...+...++..++.++.|+++|| +|||+.+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~ 93 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAA-SIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3334444444444555565566666544 799998888 88889999999999999999999 899999999988
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhh--hhhHhHHHHHHHHHHH
Q 010323 361 QMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEI--RSAGQSINVAVGFLFT 438 (513)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~~~ 438 (513)
+..++.++.... ++.+...+..++.+++.+... +....++.|.+|++. |+.+.++.+....+|.
T Consensus 94 ~~~~~~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 159 (491)
T 4aps_A 94 LIMLGHIVLALP-------------FGASALFGSIILIIIGTGFLK-PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGA 159 (491)
T ss_dssp HHHHHHHHHHSC-------------CSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-------------hhHHHHHHHHHHHHHHHHhcc-chHHHHHHHHcCcccccceeeehHHHHHHHHHH
Confidence 888877766542 455566666777777766554 444666689999888 7788888999999999
Q ss_pred HHHHHHhHHHHHhcchhhhHHHHHHHHHHHHHHH
Q 010323 439 FLIAQTFLAMLCHFKAGIFFFFGGWVVVMTTFVH 472 (513)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (513)
.++|.+.+.+.+..++...+...++..+.+.+..
T Consensus 160 ~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 160 FIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887665555544444444333
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-11 Score=120.22 Aligned_cols=164 Identities=10% Similarity=0.008 Sum_probs=121.1
Q ss_pred HHhhhcchhhhHhcHHHHH-HhcC------CCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHhHHHHHHHH
Q 010323 295 FFLQVTGINVIGFYAPVLF-RTIK------LSESTSLLMSAVVTGGIGTLSTIISMILVDKL-GRKVLFLVGGIQMLAAQ 366 (513)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~-~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~ 366 (513)
.+.....++....+.+.++ ++.| .+..+.+ .......++..++.++.|+++||+ |||+.+..+..+..++.
T Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~ 99 (524)
T 2xut_A 21 EACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAK-DVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGH 99 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHH-HHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3333344455555666655 5578 8888888 888888999999999999999999 99999999888888877
Q ss_pred HHHHHHHHhhcCCCCCCCcc-hhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHH---HHHHHHHHHHHHH
Q 010323 367 VMIGSIMENQLGDQGGFSKG-NAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSI---NVAVGFLFTFLIA 442 (513)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~~~~~~~ 442 (513)
+++.+. . +.+...+..++.+++.+... +....++.|.+|++.|+++.+. .+....+|..++|
T Consensus 100 ~~~~~~-------------~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~ 165 (524)
T 2xut_A 100 AFLAIF-------------EHSVQGFYTGLFLIALGSGGIK-PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFAS 165 (524)
T ss_dssp HHHHHT-------------SSCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-------------cccHHHHHHHHHHHHHhccccc-hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 766553 3 55666666777777766554 4445666899999999766655 8888999999999
Q ss_pred HHhHHHHHhcchhhhHHHHHHHHHHHHHHHh
Q 010323 443 QTFLAMLCHFKAGIFFFFGGWVVVMTTFVHF 473 (513)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (513)
.+.+.+.+..++...+...++..+...+..+
T Consensus 166 ~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 166 LSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888876555554444444444433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.6e-12 Score=119.57 Aligned_cols=171 Identities=12% Similarity=0.070 Sum_probs=129.3
Q ss_pred HHHhhhcchhhhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHH
Q 010323 294 PFFLQVTGINVIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIM 373 (513)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 373 (513)
..+.............|.+.++.|.+..+.+ .......++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~- 85 (375)
T 2gfp_A 8 LVAVGQMAQTIYIPAIADMARDLNVREGAVQ-SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT- 85 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSTTHHHH-HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-
Confidence 3334444455566677888888999999888 88888999999999999999999999999999998888888777664
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc
Q 010323 374 ENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK 453 (513)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (513)
++.+......++.+.+.+... +....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+
T Consensus 86 ------------~~~~~l~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 152 (375)
T 2gfp_A 86 ------------SSLTVLIAASAMQGMGTGVGG-VMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN 152 (375)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred ------------ccHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 455666666677777666544 4445666899999999999999999999999999999999887777
Q ss_pred hhhhHHHHHHHHHHHHH-HHhhcccCC
Q 010323 454 AGIFFFFGGWVVVMTTF-VHFFLPETK 479 (513)
Q Consensus 454 ~~~~~~~~~~~~~~~~~-~~~~~~~~~ 479 (513)
+...+...++..+...+ ..+..||++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 153 WRACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 66544444333333333 444556544
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-11 Score=116.86 Aligned_cols=146 Identities=12% Similarity=0.127 Sum_probs=121.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhccccc
Q 010323 78 DSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQASSVP 157 (513)
Q Consensus 78 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~~~~ 157 (513)
+....+++.+...++..++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+...+. ..
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 334 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVG--CF 334 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHH--HH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 4566788888888899999999999999999999999999988888888888888888888888888887777666 67
Q ss_pred ceeeccCCCCCccchhhH-HHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhc-ccCCCh
Q 010323 158 LYLSEMAPPRHRGAFNIG-YELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGAL-FLPETP 228 (513)
Q Consensus 158 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p 228 (513)
.++.|.+|++.|+++.+. ++....+|..++|.+++.+.+. .|++..|.+.+++.++..+..+ +.||++
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH---SHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 799999999999999888 4788889999999998877653 4688899888887777665544 466654
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=6.8e-10 Score=109.71 Aligned_cols=152 Identities=11% Similarity=0.012 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCC-----CCCCcchhHHHHHHHHHHHH
Q 010323 326 MSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQ-----GGFSKGNAYLILVLICVYVA 400 (513)
Q Consensus 326 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 400 (513)
+..+...++.++|.++.|+++||+|||+.+.++.++..++.++.++......... ...-.++.+..++.-++.++
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~ 138 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGI 138 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHH
Confidence 5566677889999999999999999999999999988888777664210000000 00012456677777888888
Q ss_pred hhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc--------hhhhHHHHHHHHHHHHHHH
Q 010323 401 GFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK--------AGIFFFFGGWVVVMTTFVH 472 (513)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 472 (513)
+.+... +....+++|..|++.|+...++.+.....|..+++..........+ +........+..+...+..
T Consensus 139 g~G~~~-~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
T 4gc0_A 139 GVGLAS-MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLL 217 (491)
T ss_dssp HHHHHH-HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHG
T ss_pred HHHHHH-HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhh
Confidence 777654 4446677899999999999999998888887777766655544322 2334444444445555555
Q ss_pred hhcccC
Q 010323 473 FFLPET 478 (513)
Q Consensus 473 ~~~~~~ 478 (513)
+..||.
T Consensus 218 ~~~peS 223 (491)
T 4gc0_A 218 YTVPES 223 (491)
T ss_dssp GGSCCC
T ss_pred hcCCCC
Confidence 667775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 513 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 3e-10 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.001 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 59.7 bits (143), Expect = 3e-10
Identities = 53/410 (12%), Positives = 106/410 (25%), Gaps = 35/410 (8%)
Query: 86 TSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALG----GAALNIYMLIFGRV 141
S + IA + SV+ R + G A A +I ++
Sbjct: 65 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLF 124
Query: 142 LLGVGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGW 201
L G G + + RG + +G L+ W
Sbjct: 125 LCGWFQGMGWPPCGR--TMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDW 182
Query: 202 GWRISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDL 261
+ + A L+ + +TP S E + D
Sbjct: 183 HAALYMPAFCA-ILVALFAFAMMRDTPQS-----------------CGLPPIEEYKNDYP 224
Query: 262 IKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSES 321
+ A+ + +Q +L+ I I I ++P + +K
Sbjct: 225 DDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL 284
Query: 322 TSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQG 381
+ + G T++ + DK+ R G M +
Sbjct: 285 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW-------- 336
Query: 382 GFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLI 441
+ + ++ + + L L E+ P + G+L +
Sbjct: 337 -MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 395
Query: 442 AQTFLAMLCHF--KAGIFFFFGGWVVVMTTFVHFFLPETKNVPIEQMDEV 489
A + F G F G ++ + + K + + E+
Sbjct: 396 ASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQEL 445
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 39.0 bits (89), Expect = 0.001
Identities = 34/396 (8%), Positives = 92/396 (23%), Gaps = 41/396 (10%)
Query: 85 FTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLG 144
+++ + L+ ++ G R +L L A + +L + ++
Sbjct: 48 IFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGS 107
Query: 145 VGIGFANQASSVPLYLSEMAPPRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWR 204
+ G + A + + + I +
Sbjct: 108 IVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQ 167
Query: 205 ISLAMAAAPALILTLGALFLPETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKA 264
+ + ALIL + F S +N +
Sbjct: 168 FVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSL----------------- 210
Query: 265 SSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRTIKLSESTSL 324
++ ++ L + ++ + F T +
Sbjct: 211 --------KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFG 262
Query: 325 LMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFS 384
++ + ++ +I+ G+ L L G I + +
Sbjct: 263 YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS----------- 311
Query: 385 KGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQT 444
A +++L +++ F + F + + + +
Sbjct: 312 ---ALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSV 367
Query: 445 FLAMLC-HFKAGIFFFFGGWVVVMTTFVHFFLPETK 479
+ + G V + T + F
Sbjct: 368 LAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 513 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.95 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.45 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.34 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-38 Score=310.53 Aligned_cols=405 Identities=15% Similarity=0.013 Sum_probs=279.0
Q ss_pred CcchHHHHHHHHHHHHhhhhhhcccccccccccchhHHhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHHHHH
Q 010323 17 GKITSFVVLSCIVAATGGLIFGYDLGISGGVTSMEPFLEKFFPKVYRKMKEDTHISNYCKFDSQLLTSFTSSLYIAGLIA 96 (513)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~i~ 96 (513)
++.++++|.+...+.++.+..++|...++.+ .|.++ |+|+|.++.|++.+++.+++.++
T Consensus 17 ~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~--------------------~p~~~-~~g~s~~~~g~~~s~~~~~~~~~ 75 (447)
T d1pw4a_ 17 PTYRRLRWQIFLGIFFGYAAYYLVRKNFALA--------------------MPYLV-EQGFSRGDLGFALSGISIAYGFS 75 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSHHHH--------------------HHHTT-SSTTCSSCHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHH-HhCcCHHHHHHHHHHHHHHHHHH
Confidence 3445567888888888888888888776654 33344 46899999999999999999999
Q ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhch----hHHHHHHHHHHHHhhhhhhhhcccccceeeccCCCCCccch
Q 010323 97 SLFASSVTRAFGRRASILVGGAAFLAGSALGGAAL----NIYMLIFGRVLLGVGIGFANQASSVPLYLSEMAPPRHRGAF 172 (513)
Q Consensus 97 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~Gi~~~~~~~~~~~~~~i~~~~~~~~r~~~ 172 (513)
++++|+++||+|||+++.++.++.+++.+++++++ +++.+++.|++.|++.+...+. ...++.|++|+++|+++
T Consensus 76 ~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~i~~~~~~~~r~~~ 153 (447)
T d1pw4a_ 76 KFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPP--CGRTMVHWWSQKERGGI 153 (447)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHH--HHHHHHTTCTTTHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhH--HHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999988764 7789999999999999999998 99999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhc-ccCCChHHHHHhCCcHHHHHHHHHHHhCC
Q 010323 173 NIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGAL-FLPETPNSIIQRSNDLQRAKQMLQRIRGT 251 (513)
Q Consensus 173 ~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~ 251 (513)
+++.+.+..+|..+++.++....... .+||+.|++.+++.++..+..+ +.+|+|+.......+.. .
T Consensus 154 ~~~~~~~~~~g~~i~~~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 220 (447)
T d1pw4a_ 154 VSVWNCAHNVGGGIPPLLFLLGMAWF--NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------K 220 (447)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHHT--CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------C
T ss_pred ccccccccchhhhhhhhhhhhHhhhh--hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh-----------h
Confidence 99999999999999998877655433 3699999998887777655544 46666542211111000 0
Q ss_pred CchHHHHHHHHHHHHhhhhcCCcchhhcccCchhHHHHHHHHHHHhhhcchhhhHhcHHHHHHh-cCCCchhHHHHHHHH
Q 010323 252 DDVEAEFDDLIKASSIAKTVNHPFKKIIQRKYRPQLVMAILIPFFLQVTGINVIGFYAPVLFRT-IKLSESTSLLMSAVV 330 (513)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~ 330 (513)
++.. ++..+ ..+++....+...+...+++.++......++..........+.+.++++ .+.+..+.+ .....
T Consensus 221 ~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 293 (447)
T d1pw4a_ 221 NDYP---DDYNE---KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSS-WAYFL 293 (447)
T ss_dssp CC-------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHH-HHHHH
T ss_pred hhcc---cchhh---ccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhh-hhhhc
Confidence 0000 00000 0000011111112222334445555555555555566677777777755 677777777 78888
Q ss_pred HHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHhhhccccccc
Q 010323 331 TGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGFSKGNAYLILVLICVYVAGFAVSWGPLG 410 (513)
Q Consensus 331 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (513)
..+..+++.++.+++.||++|++..........+.......... ....+.+......++.+++.... .+..
T Consensus 294 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~~~-~~~~ 364 (447)
T d1pw4a_ 294 YEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM--------NPAGNPTVDMICMIVIGFLIYGP-VMLI 364 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS--------CCTTCHHHHHHHHHHHHHHHTHH-HHHH
T ss_pred chhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHh--------cccccHHHHHHHHHHHHHHHHHH-HHHH
Confidence 88999999999999999999876554444433333332222210 02234455555555555544433 3444
Q ss_pred cceecccCChhhhhhHhHHHHHHHHHH-HHHHHHHhHHHHHhcchhhhHHH-HHHHHHHHHHHHh
Q 010323 411 FLVPSEIFPLEIRSAGQSINVAVGFLF-TFLIAQTFLAMLCHFKAGIFFFF-GGWVVVMTTFVHF 473 (513)
Q Consensus 411 ~~~~~~~~p~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 473 (513)
..+..|.+|++.|+++.|+.+..++++ ..++|.+.|.+.++.++...+.. .++..+..++...
T Consensus 365 ~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 365 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 566689999999999999999988875 45678899999999986554443 3333333333333
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.6e-28 Score=235.66 Aligned_cols=358 Identities=11% Similarity=0.025 Sum_probs=229.0
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHH----HHHHHHHhhh
Q 010323 72 SNYCKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLI----FGRVLLGVGI 147 (513)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~----~~r~l~Gi~~ 147 (513)
++++|+|.+++|++.+++.++..++++++|+++||+||||+++++..+..++..+..+..+..... +.+.+.+.+.
T Consensus 35 ~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (417)
T d1pv7a_ 35 HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL 114 (417)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTG
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc
Confidence 455688999999999999999999999999999999999999999999999988888876665443 4444444444
Q ss_pred hhhhhcccccceeeccCC--CCCccchhhHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHH-HHHhhccc
Q 010323 148 GFANQASSVPLYLSEMAP--PRHRGAFNIGYELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALI-LTLGALFL 224 (513)
Q Consensus 148 ~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~-~~~~~~~~ 224 (513)
+..... ......+..+ .+++.+..+........+..+++.+++.+.. .+|+..+........+ ..+..+..
T Consensus 115 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (417)
T d1pv7a_ 115 GFCFNA--GAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFAK 188 (417)
T ss_dssp GGGGTT--HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cccccc--hhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc----ccccccccchhhHHHHHHHHHHHHh
Confidence 433333 2222222222 2345667778888888889999998887765 3566666665554444 44445556
Q ss_pred CCChHHHHHhCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhhcCCc---chhhcccCchhHHHHHHHHHHHhhhcc
Q 010323 225 PETPNSIIQRSNDLQRAKQMLQRIRGTDDVEAEFDDLIKASSIAKTVNHP---FKKIIQRKYRPQLVMAILIPFFLQVTG 301 (513)
Q Consensus 225 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (513)
+|+|+.. ++ .++ +++++.+.. ..+..+.+..+.............
T Consensus 189 ~~~~~~~---~~-~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 236 (417)
T d1pv7a_ 189 TDAPSSA---TV-ANA-------------------------VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTY--- 236 (417)
T ss_dssp CCSCSSS---CS-SHH-------------------------HHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHH---
T ss_pred cccccch---hh-hhh-------------------------hhhhcccccccccccccccccccchhhhhHHHHHHH---
Confidence 6665211 00 000 000000111 111122222222222222222111
Q ss_pred hhhhHhcHHHHHHhcC----CCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhc
Q 010323 302 INVIGFYAPVLFRTIK----LSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQL 377 (513)
Q Consensus 302 ~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (513)
.......+.+..... .+..... .......++..++..+.+++.||.++|+.+..+..+..++.+.+...
T Consensus 237 -~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~----- 309 (417)
T d1pv7a_ 237 -DVFDQQFANFFTSFFATGEQGTRVFG-YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA----- 309 (417)
T ss_dssp -HHHHHHHHHHHTTSSSCHHHHHHHHH-HHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred -Hhhhccccccccccccccccchhhhc-ccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc-----
Confidence 122222222222222 2222333 55666778888899999999999999999998888887777666543
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHH-HHHHHHHHHHHHHhHHHHHhcchh-
Q 010323 378 GDQGGFSKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINV-AVGFLFTFLIAQTFLAMLCHFKAG- 455 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~- 455 (513)
++.+.......+.+++.+.... ....+..|.+|++.|+++.|+.. ....+|..++|.+.|.+.|+.|+.
T Consensus 310 --------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~ 380 (417)
T d1pv7a_ 310 --------TSALEVVILKTLHMFEVPFLLV-GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQG 380 (417)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred --------cccchhhHHHHHHHHHHHHHHH-HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
Confidence 4566666667777777666654 44556689999999999999865 556789999999999999999865
Q ss_pred hhHHHHHHHHHHHHHHHhhcccCCCCCH
Q 010323 456 IFFFFGGWVVVMTTFVHFFLPETKNVPI 483 (513)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (513)
.+++.+++.++..++..+.+++++..+.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 408 (417)
T d1pv7a_ 381 AYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCSSCTTH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccch
Confidence 4555566666666666666665555444
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=1.6e-13 Score=131.77 Aligned_cols=164 Identities=13% Similarity=0.074 Sum_probs=122.2
Q ss_pred hhHhcHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHhHHHHHHHHHHHHHHHHhhcCCCCCC
Q 010323 304 VIGFYAPVLFRTIKLSESTSLLMSAVVTGGIGTLSTIISMILVDKLGRKVLFLVGGIQMLAAQVMIGSIMENQLGDQGGF 383 (513)
Q Consensus 304 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (513)
.+....|. +++.|++..+.+ +..+...++..++.++.|+++||+|||+.+..+.++..++.++.......
T Consensus 43 ~~~~~~p~-~~~~g~s~~~~g-~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-------- 112 (447)
T d1pw4a_ 43 NFALAMPY-LVEQGFSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-------- 112 (447)
T ss_dssp SHHHHHHH-TTSSTTCSSCHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH--------
T ss_pred HHHHHHHH-HHHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchh--------
Confidence 34444554 456899999999 88889999999999999999999999999999998888887776654211
Q ss_pred CcchhHHHHHHHHHHHHhhhccccccccceecccCChhhhhhHhHHHHHHHHHHHHHHHHHhHHHHHhcc-hh-hhHHHH
Q 010323 384 SKGNAYLILVLICVYVAGFAVSWGPLGFLVPSEIFPLEIRSAGQSINVAVGFLFTFLIAQTFLAMLCHFK-AG-IFFFFG 461 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~ 461 (513)
..+.+..++..++.+++.+...... ..++.|.+|+++|+.+.|+.+....+|..+++.+.+...+..+ +. .++..+
T Consensus 113 -~~~~~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~ 190 (447)
T d1pw4a_ 113 -TSSIAVMFVLLFLCGWFQGMGWPPC-GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPA 190 (447)
T ss_dssp -HSSSSHHHHHHHHHHHHHHHTHHHH-HHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHH
T ss_pred -hhhHHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhh
Confidence 1345566666677777666655444 5556899999999999999999999999999998888777654 44 344455
Q ss_pred HHHHHHHHHHHhhcccCC
Q 010323 462 GWVVVMTTFVHFFLPETK 479 (513)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~ 479 (513)
.+..+..++.+...++.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~ 208 (447)
T d1pw4a_ 191 FCAILVALFAFAMMRDTP 208 (447)
T ss_dssp HHHHHHHHHHHHHCCCSS
T ss_pred hhHHHHHHHHHHhcccch
Confidence 555555555556655543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=9.8e-13 Score=124.33 Aligned_cols=147 Identities=13% Similarity=0.130 Sum_probs=128.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhcc
Q 010323 75 CKFDSQLLTSFTSSLYIAGLIASLFASSVTRAFGRRASILVGGAAFLAGSALGGAALNIYMLIFGRVLLGVGIGFANQAS 154 (513)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi~~~~~~~~~ 154 (513)
.+.+....+...+...++..++..+.+++.||+|||+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~- 332 (417)
T d1pv7a_ 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVG- 332 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHH-
Confidence 3457788888899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccceeeccCCCCCccchhhHH-HHHHHHHHHHHHHHHhhhcccCCccchHHHHHhhHHHHHHHHHhhcc-cCC
Q 010323 155 SVPLYLSEMAPPRHRGAFNIGY-ELCTAIGILAASLINYGTQKIKGGWGWRISLAMAAAPALILTLGALF-LPE 226 (513)
Q Consensus 155 ~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~l~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 226 (513)
..+++.|.+|+++|+++.++. +....+|..++|.+++.+.+. .||+..|++.+++.++..++..+ +++
T Consensus 333 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 333 -CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp -HHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred -HHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 899999999999999999975 567789999999998887654 57999999988887776655444 543
|