Citrus Sinensis ID: 010347

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510--
MTEVLHFPSSPTTTTAPSPSPSPSPSPSTSSSPSSLSCAPPSCLSCAPNSILLPNGDPVDDDDDAEGGSSNNSVAVSREREAEGDQLSLLALLIAIFRKSLVACKSDTRELCAMEISWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIPDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQCQTEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVMNFLKMLILRTLREREDSVVEHTPSSRLEPFDENGHQSATRSCLEDADRDNEEIEKAFITEEPVMEGSTDTGRKNEITVEEDCDPIAAVEKLTVDSDHSREAPSQVDTFISETDAHGVICLKASGAHANATMCMIGQSSDSNLKRGPRRLDKQQSVPQKTGTVEKAKGISNLSCINSRTERIEAWR
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccHHHHHHHHHHHccccccccccccHHHHccccccccccEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHcccccEEcccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccccHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccEEEEcccccccccccccccccccccEEccccccccccccHHHHccccccccccccccccccHHHHcccEccccccccccccccccHHHHHHHHHHHHHcEEEEccccccccHHcccccccEEEEEEEEEccccccccccccccccccccccccccEccccHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccEEEccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccHHHHcc
mtevlhfpsspttttapspspspspspstssspsslscappsclscapnsillpngdpvdddddaeggssnnsvaVSREREAEGDQLSLLALLIAIFRKSLVACKSDTRELCameiswptnvRHVAHVTFdrfngflglpvefepevprrapsasatvfGVSTESMQlsfdsrgnsvPTILLLMQRHLygqgglqaegifringensqEEYVRDQlnrgvipdgidIHCLAGLIKAWFRelpagvldplspeqvmqcqteeDCLQLvrllpptesALLDWAINLMADVVQQENLNKMNARNVAmvfapnmtqmadPLTALMYAVQVMNFLKMLILRTLRERedsvvehtpssrlepfdenghqsatrscledadRDNEEIEKAFiteepvmegstdtgrkneitveedcdpiAAVEKLtvdsdhsreapsqvdtfisetdahgviclkasgahanATMCMIgqssdsnlkrgprrldkqqsvpqktgtvekakgisnlscINSRTERIEAWR
mtevlhfpsspttttapspspspsPSPSTSSSPSSLSCAPPSCLSCAPNSILLPNGDPVDDDDDAEGGSSNNSVAVSREREAEGDQLSLLALLIAIFRKSLVACKSDTRELCAMEISWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIPDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQCQTEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVMNFLKMLILRTLREREDSVVehtpssrlepfdenghqSATRSCLEDADRDNEEIEKafiteepvmegstdtgrkneitveedcdpIAAVEKLtvdsdhsrEAPSQVDTFISETDAHGVICLKASGAHANATMCMIGQSSDSNLKRGPrrldkqqsvpqktgtvekakgisnlscinsrterieawr
MTEVLHFpsspttttapspspspspspstssspsslscappsclscapNSILLPngdpvdddddaeggssnnsVAVSREREAEGDQLSLLALLIAIFRKSLVACKSDTRELCAMEISWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIPDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQCQTEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVMNFLKMLILRTLREREDSVVEHTPSSRLEPFDENGHQSATRSCLEDADRDNEEIEKAFITEEPVMEGSTDTGRKNEITVEEDCDPIAAVEKLTVDSDHSREAPSQVDTFISETDAHGVICLKASGAHANATMCMIGQSSDSNLKRGPRRLDKQQSVPQKTGTVEKAKGISNLSCINSRTERIEAWR
**************************************************************************************LSLLALLIAIFRKSLVACKSDTRELCAMEISWPTNVRHVAHVTFDRFNGFLGLPVEFE******************************NSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIPDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQCQTEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVMNFLKMLILRTLR**********************************************************************************************TFISETDAHGVICLKASGAHANATMCMI***************************************************
*******************************************************************************************LLIAIFR************************RHVAHVTFDRFN**************************V*TESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIPDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQCQTEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVMNFLKMLILRTLRERE**************************************************************************************************************************************************************************
*****************************************SCLSCAPNSILLPNGDPVDD***********************DQLSLLALLIAIFRKSLVACKSDTRELCAMEISWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIPDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQCQTEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVMNFLKMLILRTLRER**********SRLEP******************RDNEEIEKAFITEEP*********RKNEITVEEDCDPIAAVEKLTVDSDHSREAPSQVDTFISETDAHGVICLKASGAHANATMCMIGQSSDSNLKR*****************VEKAKGISNLSCINSRTERIEAWR
*TEV*H**********************************P*CLSCAPNSILLP*******************************QLSLLALLIAIFRKSLVACKSDTRELCAMEISWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIPDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQCQTEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVMNFLKMLILRTLRERE**************************************************************************************************************************************************************************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTEVLHFPSSPTTTTAPSPSPSPSPSPSTSSSPSSLSCAPPSCLSCAPNSILLPNGDPVDDDDDAEGGSSNNSVAVSREREAEGDQLSLLALLIAIFRKSLVACKSDTRELCAMEISWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIPDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQCQTEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVMNFLKMLILRTLREREDSVVEHTPSSRLEPFDENGHQSATRSCLEDADRDNEEIEKAFITEEPVMEGSTDTGRKNEITVEEDCDPIAAVEKLTVDSDHSREAPSQVDTFISETDAHGVICLKASGAHANATMCMIGQSSDSNLKRGPRRLDKQQSVPQKTGTVEKAKGISNLSCINSRTERIEAWR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query512 2.2.26 [Sep-21-2011]
Q54Y72338 Rho GTPase-activating pro yes no 0.335 0.508 0.36 8e-23
Q8C4V1 747 Rho GTPase-activating pro no no 0.667 0.457 0.247 2e-16
Q5U2Z7 748 Rho GTPase-activating pro no no 0.667 0.457 0.245 1e-15
Q54QF4 909 Mental retardation GTPase no no 0.298 0.168 0.298 2e-15
Q101641275 Probable Rho-type GTPase- yes no 0.326 0.130 0.268 2e-14
Q54TH9721 Rho GTPase-activating pro no no 0.357 0.253 0.318 2e-13
Q55GP8684 Rho GTPase-activating pro no no 0.298 0.223 0.309 7e-13
Q8N264 748 Rho GTPase-activating pro no no 0.345 0.236 0.277 2e-12
Q54MI9970 Rho GTPase-activating pro no no 0.304 0.160 0.257 3e-12
P592811107 Rho GTPase-activating pro no no 0.300 0.139 0.309 5e-12
>sp|Q54Y72|GACA_DICDI Rho GTPase-activating protein gacA OS=Dictyostelium discoideum GN=gacA PE=3 SV=1 Back     alignment and function desciption
 Score =  108 bits (271), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 107/175 (61%), Gaps = 3/175 (1%)

Query: 158 VFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLN 217
           VFGV   +++   +  G  VP IL LM+R L   GGLQ EGIFR+ GE ++ + +++ +N
Sbjct: 143 VFGVDPNTLE-HVEDEGFRVPYILALMKRSLIDNGGLQQEGIFRLAGEQTEIKRLKEAMN 201

Query: 218 RGVIPDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQCQTEEDCLQLVRLLPPTESAL 277
           R       DI+ +A LIK W+RELP  +L+ +  E++      ++C+Q  + LP  + +L
Sbjct: 202 RNDFTSSTDINTVASLIKIWYRELPTPILNSIPTEKIFYSTDIDECVQSAKNLPEPQKSL 261

Query: 278 LDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQM--ADPLTALMYAVQVMNFL 330
           LDW ++L+  V    ++NKM A+N+A+V APN+  +  ++P+  L+ + + + FL
Sbjct: 262 LDWLMHLLLMVSSFSDVNKMTAQNLAIVVAPNLYDVSSSNPMEGLVLSQKCVQFL 316
Rho GTPase-activating protein involved in the signal transduction pathway.
Dictyostelium discoideum (taxid: 44689)
>sp|Q8C4V1|RHG24_MOUSE Rho GTPase-activating protein 24 OS=Mus musculus GN=Arhgap24 PE=2 SV=2 Back     alignment and function description
>sp|Q5U2Z7|RHG24_RAT Rho GTPase-activating protein 24 OS=Rattus norvegicus GN=Arhgap24 PE=2 SV=2 Back     alignment and function description
>sp|Q54QF4|MGP4_DICDI Mental retardation GTPase activating protein homolog 4 OS=Dictyostelium discoideum GN=mgp4 PE=3 SV=1 Back     alignment and function description
>sp|Q10164|RGA2_SCHPO Probable Rho-type GTPase-activating protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rga2 PE=1 SV=1 Back     alignment and function description
>sp|Q54TH9|GACY_DICDI Rho GTPase-activating protein gacY OS=Dictyostelium discoideum GN=gacY PE=3 SV=1 Back     alignment and function description
>sp|Q55GP8|GACO_DICDI Rho GTPase-activating protein gacO OS=Dictyostelium discoideum GN=gacO PE=3 SV=1 Back     alignment and function description
>sp|Q8N264|RHG24_HUMAN Rho GTPase-activating protein 24 OS=Homo sapiens GN=ARHGAP24 PE=1 SV=2 Back     alignment and function description
>sp|Q54MI9|GACK_DICDI Rho GTPase-activating protein gacK OS=Dictyostelium discoideum GN=gacK PE=3 SV=1 Back     alignment and function description
>sp|P59281|RHG39_MOUSE Rho GTPase-activating protein 39 OS=Mus musculus GN=Arhgap39 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query512
255565663493 gtpase activating protein, putative [Ric 0.910 0.945 0.684 1e-175
359479553 813 PREDICTED: uncharacterized protein LOC10 0.810 0.510 0.724 1e-172
224102841481 predicted protein [Populus trichocarpa] 0.859 0.914 0.671 1e-167
296084898356 unnamed protein product [Vitis vinifera] 0.693 0.997 0.695 1e-153
225440851533 PREDICTED: uncharacterized protein LOC10 0.820 0.787 0.626 1e-152
147806401533 hypothetical protein VITISV_014711 [Viti 0.820 0.787 0.626 1e-152
224088543515 predicted protein [Populus trichocarpa] 0.847 0.842 0.619 1e-152
297740129389 unnamed protein product [Vitis vinifera] 0.736 0.969 0.652 1e-143
449462952505 PREDICTED: uncharacterized protein LOC10 0.835 0.847 0.589 1e-142
312282151461 unnamed protein product [Thellungiella h 0.738 0.819 0.623 1e-142
>gi|255565663|ref|XP_002523821.1| gtpase activating protein, putative [Ricinus communis] gi|223536909|gb|EEF38547.1| gtpase activating protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 325/475 (68%), Positives = 365/475 (76%), Gaps = 9/475 (1%)

Query: 38  CAPPSCLSCAPNSILLPNGDPVDDDDDAEGGSSNNSVAVSREREAEGDQLSLLALLIAIF 97
           CAPPS       S  +  G   +D          +   V    + + +QLSLLALL+ IF
Sbjct: 28  CAPPSSFR---QSSYVGAGGQEEDGGFMVSECDPDEDFVKESEKNQREQLSLLALLVTIF 84

Query: 98  RKSLVACKSDTRELCAMEISWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASAT 157
           RKSL ACKSD RELCAMEI WP+NVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASAT
Sbjct: 85  RKSLAACKSDRRELCAMEIGWPSNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASAT 144

Query: 158 VFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLN 217
           VFGVSTESMQLS+DSRGNSVPTILLLMQRHLY QGGLQAEGIFRIN ENSQEEYVRDQLN
Sbjct: 145 VFGVSTESMQLSYDSRGNSVPTILLLMQRHLYSQGGLQAEGIFRINAENSQEEYVRDQLN 204

Query: 218 RGVIPDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQCQTEEDCLQLVRLLPPTESAL 277
           RGVIPDGIDIHCLAGLIKAWFRELP GVLD LSPE+VMQCQTEEDC QL R LP TE+AL
Sbjct: 205 RGVIPDGIDIHCLAGLIKAWFRELPTGVLDSLSPEKVMQCQTEEDCAQLARHLPYTEAAL 264

Query: 278 LDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVMNFLKMLILRT 337
           LDWAINLMADVV+ E++NKMNARN+AMVFAPNMTQMADPLTALMYAVQVMNFLK LILRT
Sbjct: 265 LDWAINLMADVVKHEHVNKMNARNIAMVFAPNMTQMADPLTALMYAVQVMNFLKTLILRT 324

Query: 338 LREREDSVVEHTPSSRLEPFDENGHQSATRSCLEDADRDNEEIEKAFITEEPVMEGSTDT 397
           LREREDSV+E TP+S LEPFDEN HQS    C+EDA  DNE+ ++ F+ EEPV+E S  +
Sbjct: 325 LREREDSVLEPTPTSHLEPFDENDHQSPLLYCVEDAKYDNEKTDEVFVAEEPVIESSY-S 383

Query: 398 GRKNEITVEEDCDPIAAVEKLTVDSDHSREAPSQVDTFISETDAHGVICLKASGAHANAT 457
            + N IT  E      + EKL      S EA ++VDT  +ET A  V  LKAS  H +  
Sbjct: 384 SQSNVITNGEYHSSSISAEKLIAKELQSCEAAAEVDTSTNETYAVIVNDLKAS-VHTSPG 442

Query: 458 MCMIGQSSDSNLKRGPRRLDKQQSVPQKTGTVEKAKGISNLSCINSRTERIEAWR 512
              +GQSS SNL     ++++QQS+ +   +VEK +G+SNLSCI SRTE IEAWR
Sbjct: 443 KSSVGQSSSSNLS----KINRQQSILRLAASVEKTRGLSNLSCIGSRTELIEAWR 493

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359479553|ref|XP_002273863.2| PREDICTED: uncharacterized protein LOC100243219 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224102841|ref|XP_002312823.1| predicted protein [Populus trichocarpa] gi|222849231|gb|EEE86778.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296084898|emb|CBI28307.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225440851|ref|XP_002282200.1| PREDICTED: uncharacterized protein LOC100258031 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147806401|emb|CAN67621.1| hypothetical protein VITISV_014711 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224088543|ref|XP_002308467.1| predicted protein [Populus trichocarpa] gi|222854443|gb|EEE91990.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297740129|emb|CBI30311.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449462952|ref|XP_004149199.1| PREDICTED: uncharacterized protein LOC101203345 [Cucumis sativus] gi|449515573|ref|XP_004164823.1| PREDICTED: uncharacterized LOC101203345 [Cucumis sativus] Back     alignment and taxonomy information
>gi|312282151|dbj|BAJ33941.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query512
TAIR|locus:2176392466 AT5G22400 [Arabidopsis thalian 0.644 0.708 0.723 7.2e-133
TAIR|locus:2080762435 AT3G11490 [Arabidopsis thalian 0.619 0.728 0.665 4.3e-113
TAIR|locus:2199948331 AT1G08340 [Arabidopsis thalian 0.615 0.951 0.614 1.7e-98
TAIR|locus:2062770455 ROPGAP3 "ROP guanosine triphos 0.523 0.589 0.703 4.5e-98
TAIR|locus:2139330430 AT4G03100 [Arabidopsis thalian 0.693 0.825 0.540 1.5e-97
DICTYBASE|DDB_G0278381338 gacA "papD-like domain-contain 0.365 0.553 0.345 8.2e-28
MGI|MGI:1922647 747 Arhgap24 "Rho GTPase activatin 0.666 0.456 0.247 5.5e-18
RGD|1306669 748 Arhgap24 "Rho GTPase activatin 0.666 0.455 0.244 5.7e-17
UNIPROTKB|F1MHI2 654 ARHGAP24 "Uncharacterized prot 0.666 0.521 0.233 1.3e-14
FB|FBgn00388531330 RhoGAP93B "Rho GTPase activati 0.427 0.164 0.304 2.8e-14
TAIR|locus:2176392 AT5G22400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1223 (435.6 bits), Expect = 7.2e-133, Sum P(3) = 7.2e-133
 Identities = 241/333 (72%), Positives = 278/333 (83%)

Query:    79 EREAEGDQLSLLALLIAIFRKSLVACKSDTRELCAMEISWPTNVRHVAHVTFDRFNGFLG 138
             E +   DQ+SLLALL+AIFR+SL++CKS+ RELC+MEI WPTNVRHVAHVTFDRFNGFLG
Sbjct:    80 EDDGGEDQISLLALLVAIFRRSLISCKSNRRELCSMEIGWPTNVRHVAHVTFDRFNGFLG 139

Query:   139 LPVEFEPEVPRRAPSASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEG 198
             LPVEFEPEVPRRAPSASATVFGVSTESMQLS+DSRGN VPTILLLMQ  LY QGGLQAEG
Sbjct:   140 LPVEFEPEVPRRAPSASATVFGVSTESMQLSYDSRGNCVPTILLLMQNCLYSQGGLQAEG 199

Query:   199 IFRINGENSQEEYVRDQLNRGVIPDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQCQ 258
             IFR+  ENS+EE VR+QLNRG IP+ ID+HCLAGLIKAWFRELP  VLD LSPEQVMQCQ
Sbjct:   200 IFRLTAENSEEEAVREQLNRGFIPERIDVHCLAGLIKAWFRELPTSVLDSLSPEQVMQCQ 259

Query:   259 TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLT 318
             TEE+ ++LVRLLPPTE+ALLDWAINLMADVVQ E+LNKMN+RN+AMVFAPNMTQM DPLT
Sbjct:   260 TEEENVELVRLLPPTEAALLDWAINLMADVVQYEHLNKMNSRNIAMVFAPNMTQMDDPLT 319

Query:   319 ALMYAVQVMNFLKMLILRTLREREDSVVEHTPSSRLEPFDENGHQSATRSCLEDADRDNE 378
             ALMYAVQVMNFLK LI +TLRER+DSVVE   +  LEP DE+GHQS ++S   +    +E
Sbjct:   320 ALMYAVQVMNFLKTLIEKTLRERQDSVVEQAHAFPLEPSDESGHQSPSQSLAFNTSEQSE 379

Query:   379 EIEKAFITEEPVMEGSTDTGRKNEITVEED-CD 410
             E +   I        S++    +E+T+E + C+
Sbjct:   380 ETQSDNIENAENQSSSSEIS--DELTLENNACE 410
GO:0005622 "intracellular" evidence=IEA
GO:0007165 "signal transduction" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0030675 "Rac GTPase activator activity" evidence=ISS
TAIR|locus:2080762 AT3G11490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199948 AT1G08340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062770 ROPGAP3 "ROP guanosine triphosphatase (GTPase)-activating protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139330 AT4G03100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278381 gacA "papD-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1922647 Arhgap24 "Rho GTPase activating protein 24" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306669 Arhgap24 "Rho GTPase activating protein 24" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MHI2 ARHGAP24 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0038853 RhoGAP93B "Rho GTPase activating protein at 93B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00037335001
SubName- Full=Chromosome undetermined scaffold_87, whole genome shotgun sequence; (399 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query512
smart00324174 smart00324, RhoGAP, GTPase-activator protein for R 2e-33
cd00159169 cd00159, RhoGAP, RhoGAP: GTPase-activator protein 3e-31
pfam00620152 pfam00620, RhoGAP, RhoGAP domain 2e-30
cd04389187 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase- 1e-22
cd04400190 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPas 3e-18
cd04404195 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGA 8e-18
cd04393189 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP 2e-17
cd04385184 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase- 8e-16
cd04386203 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTP 2e-15
cd04390199 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24 2e-15
cd04377186 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGA 4e-15
cd04391216 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP 9e-15
cd04381182 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTP 2e-14
cd04402192 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP 2e-13
cd04398192 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPas 2e-13
cd04394202 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGA 1e-11
cd04372194 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGA 1e-11
cd04407186 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: Rho 1e-11
cd04392208 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP 2e-11
cd04376206 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (G 1e-10
cd04384195 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPas 2e-10
pfam0078659 pfam00786, PBD, P21-Rho-binding domain 2e-10
cd04383188 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPas 6e-10
cd04395196 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP 6e-10
cd04373185 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase- 5e-09
cd04403187 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_ 1e-08
cd04406186 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: Rho 2e-07
cd04387196 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-ac 2e-07
cd0013242 cd00132, CRIB, PAK (p21 activated kinase) Binding 3e-07
cd04375220 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase- 3e-07
smart0028536 smart00285, PBD, P21-Rho-binding domain 1e-06
cd04379207 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase- 1e-05
cd04382193 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGA 1e-05
TIGR00601378 TIGR00601, rad23, UV excision repair protein Rad23 1e-04
cd0109346 cd01093, CRIB_PAK_like, PAK (p21 activated kinase) 3e-04
cd04396225 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: Rho 5e-04
cd04397213 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPas 8e-04
cd04409211 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPas 0.001
cd04378203 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: Rho 0.003
>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases Back     alignment and domain information 
 Score =  124 bits (313), Expect = 2e-33
 Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 13/171 (7%)

Query: 176 SVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIPD----GIDIHCLA 231
            +P I+     +L  + GL  EGI+R++G  S+ + +RD  + G  PD      D+H +A
Sbjct: 2   PIPIIVEKCIEYLE-KRGLDTEGIYRVSGSKSRVKELRDAFDSGPDPDLDLSEYDVHDVA 60

Query: 232 GLIKAWFRELPAGVLDP-LSPE--QVMQCQTEED----CLQLVRLLPPTESALLDWAINL 284
           GL+K + RELP  ++   L  E  +  + + E +      +L+ LLPP   A L + +  
Sbjct: 61  GLLKLFLRELPEPLITYELYEEFIEAAKLEDETERLRALRELLSLLPPANRATLRYLLAH 120

Query: 285 MADVVQQENLNKMNARNVAMVFAPNMTQMADPLTA-LMYAVQVMNFLKMLI 334
           +  V +    NKM ARN+A+VF P + +  D   A L         ++ LI
Sbjct: 121 LNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEVASLKDIRHQNTVIEFLI 171

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers. Length = 174
>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases Back     alignment and domain information
>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain Back     alignment and domain information
>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain Back     alignment and domain information
>gnl|CDD|239865 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins Back     alignment and domain information
>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) Back     alignment and domain information
>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins Back     alignment and domain information
>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs Back     alignment and domain information
>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins Back     alignment and domain information
>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain Back     alignment and domain information
>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins Back     alignment and domain information
>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins Back     alignment and domain information
>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin Back     alignment and domain information
>gnl|CDD|239867 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins Back     alignment and domain information
>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins Back     alignment and domain information
>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins Back     alignment and domain information
>gnl|CDD|239837 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins Back     alignment and domain information
>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB Back     alignment and domain information
>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins Back     alignment and domain information
>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins Back     alignment and domain information
>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA Back     alignment and domain information
>gnl|CDD|144398 pfam00786, PBD, P21-Rho-binding domain Back     alignment and domain information
>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs Back     alignment and domain information
>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins Back     alignment and domain information
>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins Back     alignment and domain information
>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains Back     alignment and domain information
>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA Back     alignment and domain information
>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins Back     alignment and domain information
>gnl|CDD|238077 cd00132, CRIB, PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway Back     alignment and domain information
>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins Back     alignment and domain information
>gnl|CDD|197628 smart00285, PBD, P21-Rho-binding domain Back     alignment and domain information
>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins Back     alignment and domain information
>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins Back     alignment and domain information
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23 Back     alignment and domain information
>gnl|CDD|238526 cd01093, CRIB_PAK_like, PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway Back     alignment and domain information
>gnl|CDD|239861 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins Back     alignment and domain information
>gnl|CDD|239862 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins Back     alignment and domain information
>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 512
KOG4270577 consensus GTPase-activator protein [Signal transdu 100.0
cd04383188 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activato 100.0
cd04390199 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPas 100.0
cd04389187 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator 100.0
cd04407186 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPas 100.0
cd04372194 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase- 100.0
cd04386203 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activa 100.0
cd04394202 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase- 100.0
cd04375220 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator 100.0
cd04408200 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator 100.0
cd04391216 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-ac 100.0
cd04384195 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activato 100.0
cd04403187 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: G 100.0
cd04406186 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPas 100.0
cd04404195 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase- 100.0
cd04402192 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-ac 100.0
cd04396225 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPas 100.0
cd04378203 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPas 100.0
cd04393189 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-ac 100.0
cd04387196 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator pr 100.0
cd04381182 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activa 100.0
cd04409211 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activato 100.0
cd04397213 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activato 100.0
cd04373185 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator 100.0
cd04379207 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator 100.0
cd04395196 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-ac 100.0
cd04377186 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase- 100.0
cd04398192 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activato 100.0
cd04400190 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activato 100.0
KOG2200674 consensus Tumour suppressor protein p122-RhoGAP/DL 100.0
cd04376206 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-acti 100.0
cd04385184 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator 100.0
cd04382193 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase- 100.0
cd04392208 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-ac 100.0
cd04388200 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator pr 100.0
cd04399212 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activato 100.0
cd04380220 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activato 100.0
cd04374203 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein 100.0
smart00324174 RhoGAP GTPase-activator protein for Rho-like GTPas 99.97
KOG42691112 consensus Rac GTPase-activating protein BCR/ABR [S 99.97
cd00159169 RhoGAP RhoGAP: GTPase-activator protein (GAP) for 99.97
KOG4407 1973 consensus Predicted Rho GTPase-activating protein 99.96
PF00620151 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members 99.95
KOG1450650 consensus Predicted Rho GTPase-activating protein 99.94
KOG4406467 consensus CDC42 Rho GTPase-activating protein [Sig 99.94
KOG1451812 consensus Oligophrenin-1 and related Rho GTPase-ac 99.92
KOG1453918 consensus Chimaerin and related Rho GTPase activat 99.92
KOG2710412 consensus Rho GTPase-activating protein [Signal tr 99.92
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.89
KOG3564604 consensus GTPase-activating protein [General funct 99.89
KOG4724 741 consensus Predicted Rho GTPase-activating protein 99.8
KOG1452442 consensus Predicted Rho GTPase-activating protein 99.75
KOG42711100 consensus Rho-GTPase activating protein [Signal tr 99.67
cd04401198 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activato 99.59
cd04405235 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPas 99.51
KOG4370514 consensus Ral-GTPase effector RLIP76 [Signal trans 99.11
KOG3565640 consensus Cdc42-interacting protein CIP4 [Cytoskel 99.05
PF08101420 DUF1708: Domain of unknown function (DUF1708); Int 98.07
KOG4724741 consensus Predicted Rho GTPase-activating protein 97.77
KOG1453918 consensus Chimaerin and related Rho GTPase activat 96.26
KOG4271 1100 consensus Rho-GTPase activating protein [Signal tr 94.16
KOG1449 670 consensus Predicted Rho GTPase-activating protein 91.5
KOG1449 670 consensus Predicted Rho GTPase-activating protein 85.11
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3e-44  Score=387.68  Aligned_cols=238  Identities=58%  Similarity=0.892  Sum_probs=222.7

Q ss_pred             CcccccccccCCccccccccchhhhhhc---ccCCCcccCCCCCCCCCCCCCcccccChhhhhhhcCCCCCCCCHHHHHH
Q 010347          108 TRELCAMEISWPTNVRHVAHVTFDRFNG---FLGLPVEFEPEVPRRAPSASATVFGVSTESMQLSFDSRGNSVPTILLLM  184 (512)
Q Consensus       108 ~~~~~~~~~g~~~~v~~la~v~~~rl~~---~~glp~~~~p~~~~~~p~~~~~vFGv~Le~l~~~~~~~g~~VP~il~~~  184 (512)
                      ....++|+++|+++++|.++++|+++.+   ++|.+.+++++++++.+.+...+|||+++.+++.++.+++.||.++..+
T Consensus        93 e~e~~~~kie~~~d~~~~~~~~f~~~~~~~~f~~~~~e~q~~~~rrals~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~  172 (577)
T KOG4270|consen   93 EEEECGMKIEQPTDQRHADHVTFDRKEGEYLFLGLPVEFQPDYHRRALSASETVFGVSTEAMQLSYDPRGNFVPLILHLL  172 (577)
T ss_pred             hHHhhcCccccCcchhhhhhhhhhhhcchhhhccchhhhccccccccccchhhhhcchHHhhhcccccCCCcchhhhHhh
Confidence            4567899999999999999999999999   9999999999999999999999999999999999999998899999999


Q ss_pred             HH-HHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCCCC--CChhhhHHHHHHHHHhCCCCCCCCCCHHHHHhh---c
Q 010347          185 QR-HLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIPDG--IDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQC---Q  258 (512)
Q Consensus       185 i~-~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~~~--~Dvh~vAsLLK~fLReLPePLL~~~l~e~~~~~---~  258 (512)
                      .. +||.++|++.|||||++|...+++.||++||.|.++..  .|+|++|++||.||||||+||+++.+|++|++.   +
T Consensus       173 ~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH~~agllKayLRELPepvl~~nL~~e~~qv~~~~  252 (577)
T KOG4270|consen  173 QSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYIDVHCLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCE  252 (577)
T ss_pred             hhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCCHHHHHHHHHHHHHhCCCcCCCcccCHHHHHHHhcc
Confidence            99 99999999999999999999999999999999987766  999999999999999999999999999998764   3


Q ss_pred             cHHH----HHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhcccccCCChhHHHHHHHHHHHHHHHHH
Q 010347          259 TEED----CLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVMNFLKMLI  334 (512)
Q Consensus       259 ~~e~----~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~~~l~~~~~v~~~l~~LI  334 (512)
                      ..++    ++.++.+||+.|+.+|.|+|.||++|++++++|||+++||||||||||+|+.++.++++++++++++++.+|
T Consensus       253 ~e~~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlAiV~gPNl~~~~~p~~~l~~avqvs~~~~~li  332 (577)
T KOG4270|consen  253 NEDEKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLAIVFGPNLLWMKDPLTALMYAVQVSNFLKGLI  332 (577)
T ss_pred             CHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhceeEecCCccccCChHHHHHHHHHHHHHHHHHH
Confidence            3333    456667999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccccc
Q 010347          335 LRTLREREDSV  345 (512)
Q Consensus       335 ~~~L~e~~~~i  345 (512)
                      +.+|.+++..+
T Consensus       333 e~~l~~~~~~~  343 (577)
T KOG4270|consen  333 EKTLEERDTSF  343 (577)
T ss_pred             HHHHHhhhccC
Confidence            99987776653

>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs Back     alignment and domain information
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain Back     alignment and domain information
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain Back     alignment and domain information
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB Back     alignment and domain information
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins Back     alignment and domain information
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins Back     alignment and domain information
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins Back     alignment and domain information
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins Back     alignment and domain information
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) Back     alignment and domain information
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins Back     alignment and domain information
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA Back     alignment and domain information
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains Back     alignment and domain information
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA Back     alignment and domain information
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) Back     alignment and domain information
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins Back     alignment and domain information
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins Back     alignment and domain information
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins Back     alignment and domain information
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins Back     alignment and domain information
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin Back     alignment and domain information
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins Back     alignment and domain information
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins Back     alignment and domain information
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins Back     alignment and domain information
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins Back     alignment and domain information
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins Back     alignment and domain information
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins Back     alignment and domain information
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins Back     alignment and domain information
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms] Back     alignment and domain information
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins Back     alignment and domain information
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs Back     alignment and domain information
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins Back     alignment and domain information
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins Back     alignment and domain information
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase) Back     alignment and domain information
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins Back     alignment and domain information
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins Back     alignment and domain information
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins Back     alignment and domain information
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases Back     alignment and domain information
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms] Back     alignment and domain information
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases Back     alignment and domain information
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only] Back     alignment and domain information
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation Back     alignment and domain information
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG3564 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] Back     alignment and domain information
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins Back     alignment and domain information
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins Back     alignment and domain information
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms] Back     alignment and domain information
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton] Back     alignment and domain information
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [] Back     alignment and domain information
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms] Back     alignment and domain information
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query512
1xa6_A466 Crystal Structure Of The Human Beta2-Chimaerin Leng 5e-09
3eap_A271 Crystal Structure Of The Rhogap Domain Of Arhgap11a 5e-09
1ow3_A242 Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With 1e-07
3cxl_A463 Crystal Structure Of Human Chimerin 1 (Chn1) Length 2e-07
3iug_A229 Crystal Structure Of The Rhogap Domain Of Rics Leng 2e-07
1grn_B203 Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX 2e-07
1tx4_A198 RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198 2e-07
1am4_A199 Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S 2e-07
2osa_A202 The Rho-Gap Domain Of Human N-Chimaerin Length = 20 3e-07
2ngr_B234 Transition State Complex For Gtp Hydrolysis By Cdc4 1e-06
2ee5_A219 Solution Structure Of The N-Teruminus Extended Rhog 3e-06
2ee4_A209 Solution Structure Of The Rhogap Domain From Human 4e-06
3fk2_A246 Crystal Structure Of The Rhogap Domain Of Human Glu 1e-05
3byi_A214 Crystal Structure Of Human Rho Gtpase Activating Pr 1e-05
3kuq_A228 Crystal Structure Of The Dlc1 Rhogap Domain Length 3e-05
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin Length = 466 Back     alignment and structure 
Iteration: 1

 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 22/167 (13%)
Query: 193 GLQAEGIFRINGENSQEEYVRDQLNR---------GVIPDGIDIHCLAGLIKAWFRELPA 243
           GL++EG++R++G     E V+   +R          V PD   I+ + G +K +FR+LP 
Sbjct: 303 GLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPD---INIITGALKLYFRDLPI 359
Query: 244 GVLDPLSPEQVMQC-------QTEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNK 296
            V+   +  + +         +  E   +++ LLPP     L + +  +  V   E  N 
Sbjct: 360 PVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNF 419
Query: 297 MNARNVAMVFAPNMTQMADPLTALMYAVQVMNFLKMLILRTLRERED 343
           MNA N+ +VF P  T M  P  + +  +  M + K LI++ L E ED
Sbjct: 420 MNAENLGIVFGP--TLMRPPEDSTLTTLHDMRYQK-LIVQILIENED 463
>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a Length = 271 Back     alignment and structure
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 242 Back     alignment and structure
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1) Length = 463 Back     alignment and structure
>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics Length = 229 Back     alignment and structure
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX Length = 203 Back     alignment and structure
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198 Back     alignment and structure
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 199 Back     alignment and structure
>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin Length = 202 Back     alignment and structure
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42: Comparisons Of The High Resolution Structures For Cdc42 Bound To The Active And Catalytically Compromised Forms Of The Cdc42-gap Length = 234 Back     alignment and structure
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 219 Back     alignment and structure
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 209 Back     alignment and structure
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Glucocorticoid Receptor Dna-Binding Factor 1 Length = 246 Back     alignment and structure
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein 15 (arhgap15) Length = 214 Back     alignment and structure
>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain Length = 228 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query512
1ow3_A242 RHO-GTPase-activating protein 1; complex, GTPase, 1e-32
1tx4_A198 P50-rhogap; complex (GTPase activation/proto-oncog 1e-32
3msx_B201 RHO GTPase-activating protein 20; protein-proten c 1e-30
3eap_A271 RHO GTPase-activating protein 11A; GAP, structural 2e-30
3fk2_A246 Glucocorticoid receptor DNA-binding factor 1; stru 6e-28
3kuq_A228 RHO GTPase-activating protein 7; structural genomi 7e-28
2ee4_A209 RHO GTPase activating protein 5 variant; all alpha 3e-26
3qis_A366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 5e-26
3byi_A214 RHO GTPase activating protein 15; BM046, arhgap15, 6e-24
2osa_A202 N-chimaerin; RHO-GAP, GTPase activation, structura 5e-23
1f7c_A231 Rhogap protein; GTPase activating protein, RHO GTP 9e-23
3iug_A229 RHO/CDC42/RAC GTPase-activating protein RICS; stru 1e-22
1pbw_A216 Rhogap domain, phosphatidylinositol 3-kinase; phos 2e-22
3cxl_A463 N-chimerin; SH2, RHO-GAP, structural genomics cons 4e-22
2ovj_A201 Mgcracgap, RAC GTPase-activating protein 1; signal 1e-21
2xs6_A214 Phosphatidylinositol 3-kinase regulatory subunit; 3e-17
2qme_I36 CRIB domain of the serine/threonine-protein kinas; 2e-06
2odb_B35 Serine/threonine-protein kinase PAK 6; small GTPas 3e-06
2ov2_I35 Serine/threonine-protein kinase PAK 4; GTPase RAC3 9e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
1f3m_A80 Serine/threonine-protein kinase PAK-alpha; kinase 8e-05
1cee_B59 Wiskott-aldrich syndrome protein WAsp; CDC42 actin 4e-04
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Length = 242 Back     alignment and structure
 Score =  123 bits (312), Expect = 1e-32
 Identities = 48/203 (23%), Positives = 80/203 (39%), Gaps = 19/203 (9%)

Query: 145 PEVPRRAPSASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRING 204
           P+     P      FGVS +      +     +P +L     +L     L  EGIFR + 
Sbjct: 31  PKPMPPRPPLPNQQFGVSLQH-LQEKNPEQEPIPIVLRETVAYLQ-AHALTTEGIFRRSA 88

Query: 205 ENSQEEYVRDQLNRGVIPD---GIDIHCLAGLIKAWFRELPAGVLDPLSP----EQVMQC 257
                  V+ + N G+  D     ++H  A ++K + RELP    +PL        V+  
Sbjct: 89  NTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELP----EPLLTFDLYPHVVGF 144

Query: 258 QTEED------CLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMT 311
              ++       LQ+++ LP     +L +    +  +    + NKM   N+A+VF PN+ 
Sbjct: 145 LNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLL 204

Query: 312 QMADPLTALMYAVQVMNFLKMLI 334
              D    L     +  F K L+
Sbjct: 205 WAKDAAITLKAINPINTFTKFLL 227
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Length = 198 Back     alignment and structure
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Length = 201 Back     alignment and structure
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Length = 271 Back     alignment and structure
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Length = 246 Back     alignment and structure
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Length = 228 Back     alignment and structure
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Length = 209 Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Length = 366 Back     alignment and structure
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Length = 214 Back     alignment and structure
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Length = 202 Back     alignment and structure
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Length = 231 Back     alignment and structure
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Length = 229 Back     alignment and structure
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Length = 216 Back     alignment and structure
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463 Back     alignment and structure
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Length = 201 Back     alignment and structure
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Length = 214 Back     alignment and structure
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens} Length = 36 Back     alignment and structure
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens} Length = 35 Back     alignment and structure
>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens} Length = 35 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B Length = 80 Back     alignment and structure
>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens} Length = 59 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query512
1tx4_A198 P50-rhogap; complex (GTPase activation/proto-oncog 100.0
1ow3_A242 RHO-GTPase-activating protein 1; complex, GTPase, 100.0
3msx_B201 RHO GTPase-activating protein 20; protein-proten c 100.0
3fk2_A246 Glucocorticoid receptor DNA-binding factor 1; stru 100.0
2ee4_A209 RHO GTPase activating protein 5 variant; all alpha 100.0
2osa_A202 N-chimaerin; RHO-GAP, GTPase activation, structura 100.0
3iug_A229 RHO/CDC42/RAC GTPase-activating protein RICS; stru 100.0
3byi_A214 RHO GTPase activating protein 15; BM046, arhgap15, 100.0
1pbw_A216 Rhogap domain, phosphatidylinositol 3-kinase; phos 100.0
3eap_A271 RHO GTPase-activating protein 11A; GAP, structural 100.0
3kuq_A228 RHO GTPase-activating protein 7; structural genomi 100.0
1f7c_A231 Rhogap protein; GTPase activating protein, RHO GTP 100.0
2ovj_A201 Mgcracgap, RAC GTPase-activating protein 1; signal 100.0
2xs6_A214 Phosphatidylinositol 3-kinase regulatory subunit; 100.0
3qis_A366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 100.0
3cxl_A463 N-chimerin; SH2, RHO-GAP, structural genomics cons 100.0
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Back     alignment and structure
Probab=100.00  E-value=3.4e-39  Score=308.63  Aligned_cols=187  Identities=25%  Similarity=0.354  Sum_probs=158.7

Q ss_pred             CCCCcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCCC---CCChhh
Q 010347          153 SASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIPD---GIDIHC  229 (512)
Q Consensus       153 ~~~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~~---~~Dvh~  229 (512)
                      ....++||++|+.++.. +.....||.+|.+|++|| +.+|+++|||||++|+..++++|++.||+|...+   ..|+|+
T Consensus         3 ~~~~~vFG~~L~~~~~~-~~~~~~vP~iv~~~i~~l-~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~   80 (198)
T 1tx4_A            3 PLPNQQFGVSLQHLQEK-NPEQEPIPIVLRETVAYL-QAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHL   80 (198)
T ss_dssp             CCTTCCTTSCHHHHHHH-STTCCSSCHHHHHHHHHH-HHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHH
T ss_pred             CCCCCccCCcHHHHHhh-CCCCCCCCHHHHHHHHHH-HHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCccccccchH
Confidence            34678999999998643 222348999999999998 6789999999999999999999999999997432   368999


Q ss_pred             hHHHHHHHHHhCCCCCCCCCCHHHHHhhc------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhH
Q 010347          230 LAGLIKAWFRELPAGVLDPLSPEQVMQCQ------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVA  303 (512)
Q Consensus       230 vAsLLK~fLReLPePLL~~~l~e~~~~~~------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLA  303 (512)
                      +|++||.|||+||+||+|.++|+.|+++.      +.+.++.++.+||+.|+.+|+||+.||++|+++++.|||++.|||
T Consensus        81 ~a~lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa  160 (198)
T 1tx4_A           81 PAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLA  160 (198)
T ss_dssp             HHHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred             HHHHHHHHHHHCCCcCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Confidence            99999999999999999999999999763      456789999999999999999999999999999999999999999


Q ss_pred             HhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010347          304 MVFAPNMTQMADPLTALMYAVQVMNFLKMLILRTLREREDSVV  346 (512)
Q Consensus       304 iVFaPnLlr~~d~~~~l~~~~~v~~~l~~LI~~~L~e~~~~if  346 (512)
                      +||||+|+|+.+....+........+++.     |+++++.||
T Consensus       161 ~vf~P~Ll~~~~~~~~~~~~~~~~~~v~~-----LI~~~~~iF  198 (198)
T 1tx4_A          161 VVFGPNLLWAKDAAITLKAINPINTFTKF-----LLDHQGELF  198 (198)
T ss_dssp             HHHHHHHCCCSSHHHHHHTHHHHHHHHHH-----HHHTHHHHC
T ss_pred             hhhcccccCCCCccccHHHHHHHHHHHHH-----HHHhHHHhC
Confidence            99999999998766555444444555544     445556665
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Back     alignment and structure
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Back     alignment and structure
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Back     alignment and structure
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Back     alignment and structure
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Back     alignment and structure
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Back     alignment and structure
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Back     alignment and structure
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Back     alignment and structure
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Back     alignment and structure
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Back     alignment and structure
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Back     alignment and structure
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Back     alignment and structure
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 512
d1tx4a_196 a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapi 4e-30
d1xa6a1196 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal d 4e-28
d1pbwa_184 a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Hu 5e-23
d1f7ca_191 a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxI 2e-20
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 4e-30
 Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 11/186 (5%)

Query: 158 VFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLN 217
            FGVS + +Q   +     +P +L     +L     L  EGIFR +        V+ + N
Sbjct: 6   QFGVSLQHLQ-EKNPEQEPIPIVLRETVAYLQ-AHALTTEGIFRRSANTQVVREVQQKYN 63

Query: 218 RGV---IPDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQCQTEEDC------LQLVR 268
            G+         +H  A ++K + RELP  +L       V+     ++       LQ+++
Sbjct: 64  MGLPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQ 123

Query: 269 LLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVMN 328
            LP     +L +    +  +    + NKM   N+A+VF PN+    D    L     +  
Sbjct: 124 TLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINT 183

Query: 329 FLKMLI 334
           F K L+
Sbjct: 184 FTKFLL 189
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196 Back     information, alignment and structure
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Length = 191 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query512
d1xa6a1196 Beta-chimaerin, C-terminal domain {Human (Homo sap 100.0
d1tx4a_196 p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 96 100.0
d1f7ca_191 Graf {Chicken (Gallus gallus) [TaxId: 9031]} 99.98
d1pbwa_184 p85 alpha subunit RhoGAP domain {Human (Homo sapie 99.97
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-37  Score=290.18  Aligned_cols=181  Identities=24%  Similarity=0.378  Sum_probs=149.4

Q ss_pred             cccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCC-C-----CCCCChhhh
Q 010347          157 TVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGV-I-----PDGIDIHCL  230 (512)
Q Consensus       157 ~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~-~-----~~~~Dvh~v  230 (512)
                      +|||++|+.++..   .+..||.+|.+|++|| +++|+++|||||++|+..++++|++.+|++. .     ....|+|++
T Consensus         1 kiFg~~L~~~~~~---~~~~iP~iv~~~i~~l-~~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~~d~~~v   76 (196)
T d1xa6a1           1 KVYCCDLTTLVKA---HNTQRPMVVDICIREI-EARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINII   76 (196)
T ss_dssp             CCTTSCHHHHHHH---HTCSSCHHHHHHHHHH-HHSCSSSTTTTTSCCCHHHHHHHHHHHSSTTTTSCCCSSSSCCTHHH
T ss_pred             CccCCCHHHHHHh---cCCCCChHHHHHHHHH-HHhCCCCCCeeeeCCCHHHHHHHHHHHhcCCCccccccccccchhHH
Confidence            4899999998643   3457999999999998 6799999999999999999999999999853 1     123699999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhH
Q 010347          231 AGLIKAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVA  303 (512)
Q Consensus       231 AsLLK~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLA  303 (512)
                      |++||+|||+||+||++.++|+.++.+.       +.+.++.++.+||+.|+.+|.||+.||++|+++++.||||+.|||
T Consensus        77 a~~lK~fLr~Lp~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLA  156 (196)
T d1xa6a1          77 TGALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLG  156 (196)
T ss_dssp             HHHHHHHHHHCSSCTTCSTTHHHHHTTTTCCCHHHHHHHHHHHHTTSCHHHHHHHHHTTTTTHHHHTTTTTSCCCHHHHH
T ss_pred             HHHHHHHHHhCCCccCCHHHHHHHHHHHhccchhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhhccchhhhh
Confidence            9999999999999999999999998754       245678899999999999999999999999999999999999999


Q ss_pred             HhhhcccccCCCh--hHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010347          304 MVFAPNMTQMADP--LTALMYAVQVMNFLKMLILRTLREREDSVV  346 (512)
Q Consensus       304 iVFaPnLlr~~d~--~~~l~~~~~v~~~l~~LI~~~L~e~~~~if  346 (512)
                      +||||+|+++++.  ...+........+++     +|+++++.||
T Consensus       157 ~~f~P~l~~~~~~~~~~~~~~~~~~~~iv~-----~LI~~~~~iF  196 (196)
T d1xa6a1         157 IVFGPTLMRPPEDSTLTTLHDMRYQKLIVQ-----ILIENEDVLF  196 (196)
T ss_dssp             HHHTTTSCCCCCSCTTGGGGTHHHHHHHHH-----HHHHTHHHHC
T ss_pred             HHhccccccCCCccHHHHHHHHHHHHHHHH-----HHHHhhHhhC
Confidence            9999999997543  222222233333444     3445556665
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure