Citrus Sinensis ID: 010350
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 512 | 2.2.26 [Sep-21-2011] | |||||||
| Q3E9A0 | 517 | Probable anion transporte | yes | no | 0.947 | 0.938 | 0.673 | 0.0 | |
| Q0IZQ3 | 471 | Probable anion transporte | yes | no | 0.650 | 0.707 | 0.722 | 1e-137 | |
| Q652N5 | 591 | Probable anion transporte | no | no | 0.863 | 0.747 | 0.380 | 4e-86 | |
| Q9SDI4 | 529 | Probable anion transporte | no | no | 0.742 | 0.718 | 0.416 | 2e-84 | |
| O82390 | 512 | Sodium-dependent phosphat | no | no | 0.783 | 0.783 | 0.391 | 4e-83 | |
| Q8GX78 | 541 | Probable anion transporte | no | no | 0.886 | 0.839 | 0.364 | 2e-81 | |
| Q8W0H5 | 519 | Probable anion transporte | no | no | 0.748 | 0.737 | 0.382 | 8e-61 | |
| Q7XJR2 | 512 | Probable anion transporte | no | no | 0.855 | 0.855 | 0.334 | 4e-60 | |
| Q53WP9 | 535 | Probable anion transporte | no | no | 0.75 | 0.717 | 0.349 | 8e-57 | |
| Q66GI9 | 533 | Probable anion transporte | no | no | 0.736 | 0.707 | 0.349 | 2e-55 |
| >sp|Q3E9A0|ANTR6_ARATH Probable anion transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ANTR6 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/520 (67%), Positives = 397/520 (76%), Gaps = 35/520 (6%)
Query: 1 MAKLTLGAEKFFVFAHNTSSGRLVFAKRNS--SKRQKFHLYPSEGCSRLRVSCSIKEKEN 58
MA+LTL HN ++A + S F + + RV CS E
Sbjct: 1 MARLTLRP-------HNHFFSSPIYAHKQPFLSVYTIFPHHHQNPLIKSRVKCSASGTER 53
Query: 59 VKEET-----DKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRY 113
V+E D ++ L + E S E G WPPWKNIPQRY
Sbjct: 54 VRESKKLPPKDPIEDPKPQLPIPEVLST--------------ETGFEQNWPPWKNIPQRY 99
Query: 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLA 173
KLIG TSLAFVICNMDKVNLS+AIIPMSH+FGW+SSVAGLVQSSFFWGYALSQLPGGWL+
Sbjct: 100 KLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPGGWLS 159
Query: 174 KIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP 233
KIFGGRKVL+ GV WS ATAL+PLLAGFMPGL+ SR+LVGIGEGVSPSAATDLIAR+IP
Sbjct: 160 KIFGGRKVLEIGVFTWSFATALVPLLAGFMPGLIFSRILVGIGEGVSPSAATDLIARTIP 219
Query: 234 LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGE 293
++ERSRAV FVFGGLS GSV GLLLAPPIIE WESVFY+FGLLG+ WF GF+ L E E
Sbjct: 220 VKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQFLNEEE 279
Query: 294 TSNGATLAPRSNYINM-KKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH 352
S + N I+ KS +A+ EE+G SLK++PWK+ F+S AVWAMIY HFCGSWGH
Sbjct: 280 VSY------KGNEISTSHKSENATKEELGSSLKEIPWKSFFQSPAVWAMIYTHFCGSWGH 333
Query: 353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKI 412
YTCLSWLPTYFSE LSLNLTEAAWVSILPPLAS++VTS+A+QFAD LI GV+TT VRKI
Sbjct: 334 YTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVDTTTVRKI 393
Query: 413 CQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL 472
CQTIAF++PA+CMTLSS+D+GLP WEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL
Sbjct: 394 CQTIAFVAPAICMTLSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL 453
Query: 473 LGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCPPRFY 512
LGITNTVGAVPGIVGVALTG+LLDSTHSW++S P F+
Sbjct: 454 LGITNTVGAVPGIVGVALTGFLLDSTHSWTMSLFVPSIFF 493
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Inorganic phosphate and probable anion transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0IZQ3|PHT45_ORYSJ Probable anion transporter 5, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 490 bits (1261), Expect = e-137, Method: Compositional matrix adjust.
Identities = 250/346 (72%), Positives = 283/346 (81%), Gaps = 13/346 (3%)
Query: 180 KVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR 239
+VL+ GV+ WSLATA++P +AGFMPGLVLSR+LVGIGEGVSPSAATDLIARSIP++ERSR
Sbjct: 99 RVLEIGVVAWSLATAIIPAVAGFMPGLVLSRILVGIGEGVSPSAATDLIARSIPVQERSR 158
Query: 240 AVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGAT 299
AV+ VFGGLSFGSV GLL APPII+NLGWESVFYIFGLLGI W GF+ L+E +
Sbjct: 159 AVAVVFGGLSFGSVLGLLFAPPIIQNLGWESVFYIFGLLGIIWCLGFQSLKEQQLRGNED 218
Query: 300 LAPRSNY-------------INMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346
+ + KS +SL E+ SLKDVPW+ F+SKAVWAMIYAHF
Sbjct: 219 IQVIQDLGQSPSGSSDLISSSVSPKSSESSLGELMNSLKDVPWREFFKSKAVWAMIYAHF 278
Query: 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET 406
CGSWGHYTCLSWLPT+FSEEL LNLTEAAWVS+LPPL S+++TSIAA FADNLI+ GV+T
Sbjct: 279 CGSWGHYTCLSWLPTFFSEELDLNLTEAAWVSVLPPLGSMIITSIAAPFADNLISNGVDT 338
Query: 407 TMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISP 466
T VRKICQTIAFLSPA M LSS+DLG+P WEIV LT+GLALSSFALSGLYCTHQDIS
Sbjct: 339 TKVRKICQTIAFLSPATFMMLSSVDLGVPPWEIVAFLTSGLALSSFALSGLYCTHQDISR 398
Query: 467 EYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCPPRFY 512
EYASILLGITNTVGAVPGIVGVALTGYLLD+THSWS+S P F+
Sbjct: 399 EYASILLGITNTVGAVPGIVGVALTGYLLDTTHSWSISLFAPSIFF 444
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Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 319 bits (817), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 177/465 (38%), Positives = 268/465 (57%), Gaps = 23/465 (4%)
Query: 43 GCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASY 102
C + ++ + + K E + +TG P S S +E+ + T E+
Sbjct: 125 ACVQPDYKIPVRTRADCKAEQYE----ITG----SPLSPSDVPAEAVLIGDTNEIS---- 172
Query: 103 WPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGY 162
P W+ P+R+ ++ +F++CNMD+VN+S+AI+PMS FGW+ + GL+QSSFFWGY
Sbjct: 173 -PWWQQFPKRWTVVLLCFFSFLLCNMDRVNMSIAILPMSSEFGWSPATVGLIQSSFFWGY 231
Query: 163 ALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIGEGVSP 221
L+Q+ GG A FGG+ VL GV+ WS+AT L PL A +P L++ R +GIGEGV+
Sbjct: 232 LLTQILGGIWADRFGGKVVLGFGVVWWSIATVLTPLAAKIGLPFLLVMRAFMGIGEGVAM 291
Query: 222 SAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIA 281
A +++++ +P+ ERSR+++ V+ G+ GSV GL +P +I GW SVFY FG LG
Sbjct: 292 PAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLISRFGWPSVFYAFGSLGSV 351
Query: 282 WFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAM 341
WF+ L + + + + P + + L S + E + +PWK I VWA+
Sbjct: 352 WFA----LWQRKAHSSPSEDPELSKAEKRYILGGS--TLKEPVTSIPWKLILSKPPVWAL 405
Query: 342 IYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA 401
I +HFC +WG + L+W+PTY+++ L NLTE+ + +LP L + +I AD L+
Sbjct: 406 IVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAIFANIGGWIADTLVG 465
Query: 402 TGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTH 461
GV T VRKI Q+I FL PA+ +TL S + P ++ + +F+ SGLY H
Sbjct: 466 RGVSITNVRKIMQSIGFLGPALFLTLLS-KVRTPAMAVL-CMACSQGSDAFSQSGLYSNH 523
Query: 462 QDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQ 506
QDI P YA +LLG++NT G + G+ G A TGY+L SW +Q
Sbjct: 524 QDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQK-GSWDSVFQ 567
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Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 313 bits (802), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 163/391 (41%), Positives = 237/391 (60%), Gaps = 11/391 (2%)
Query: 108 NIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQL 167
P+R+ ++ AF++CNMD+VN+S+AI+PMS FGWN GL+QSSFFWGY L+Q+
Sbjct: 115 QFPKRWAIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQI 174
Query: 168 PGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIGEGVSPSAATD 226
GG A GG+ VL GV+ WS+ATAL P A +P L+++R +G+GEGV+ A +
Sbjct: 175 AGGIWADTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNN 234
Query: 227 LIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGF 286
++++ +P+ ERSR+++ V+ G+ GSV GL +P +I N GW SVFY FG LG+ WFS +
Sbjct: 235 ILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTW 294
Query: 287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346
++ +K L S GE +K++PW I VWA+I +HF
Sbjct: 295 ASKAYSSPLEDPGISAE------EKKLITSQTTGGEPVKEIPWGLILSKPPVWALIVSHF 348
Query: 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET 406
C +WG + L+W+PTY+++ L NLTE+ +LP L + + AD L++ G+
Sbjct: 349 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLSV 408
Query: 407 TMVRKICQTIAFLSPAVCMT-LSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDIS 465
T VRKI Q+I FL PA +T LS ID P ++ + +F+ SGLY HQDI
Sbjct: 409 TTVRKIMQSIGFLGPAFFLTQLSHID--SPAMAVL-CMACSQGTDAFSQSGLYSNHQDIG 465
Query: 466 PEYASILLGITNTVGAVPGIVGVALTGYLLD 496
P YA +LLG++NT G + G+ G A TGY+L
Sbjct: 466 PRYAGVLLGLSNTAGVLAGVFGTAATGYILQ 496
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Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 309 bits (791), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 163/416 (39%), Positives = 245/416 (58%), Gaps = 15/416 (3%)
Query: 87 ESGQVRGTEEVGRAS----YWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSH 142
E +V G +V S P W+ P+R+ ++ AF++CNMD+VN+S+AI+PMS
Sbjct: 73 EGDKVSGNNDVVSDSPSSIVLPWWEEFPKRWVIVLLCFSAFLLCNMDRVNMSIAILPMSA 132
Query: 143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
+GWN + GL+QSSFFWGY L+Q+ GG A GG++VL GV+ WS+AT L P+ A
Sbjct: 133 EYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATILTPVAAKL 192
Query: 203 -MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP 261
+P L++ R +G+GEGV+ A +++++ +P++ERSR+++ V+ G+ GSV GL +P
Sbjct: 193 GLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPF 252
Query: 262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
+I GW SVFY FG LG W + + E TL P ++ L A
Sbjct: 253 LIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPTLLPE------ERKLIADNCASK 306
Query: 322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILP 381
E +K +PW+ I VWA+I HFC +WG + L+W+PTY+ + L NL E+ +S+ P
Sbjct: 307 EPVKSIPWRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLLSVFP 366
Query: 382 PLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT-LSSIDLGLPHWEIV 440
+ + + AD L++ G T VRKI QTI FL PA +T L ID P ++
Sbjct: 367 WMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHID--SPTMAVL 424
Query: 441 GILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLD 496
+ +F+ SGLY HQDI+P Y+ +LLG++NT G + G++G A TG++L
Sbjct: 425 -CMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVLGTAATGHILQ 479
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Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 303 bits (777), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 178/488 (36%), Positives = 269/488 (55%), Gaps = 34/488 (6%)
Query: 37 HLYPSEGC-------SRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESG 89
H+ S GC S +R SIK + + ++ G+ GS +E+
Sbjct: 58 HMRRSFGCFLQPRMDSVIRFRNSIKINRSRAYYKSEESDITEGVVPSADGS-----AEAI 112
Query: 90 QVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSS 149
V G + AS W W+ P+R+ ++ +F++CNMD+VN+S+AI+PMS + W+S+
Sbjct: 113 LVEGNLQ--NASPW--WQQFPRRWVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSA 168
Query: 150 VAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVL 208
GL+QSSFFWGY L+Q+ GG A FGG+ VL GV+ WS AT + P+ A +P L++
Sbjct: 169 TVGLIQSSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLV 228
Query: 209 SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW 268
R +GIGEGV+ A +++++ IP+ ERSR+++ V+ G+ GSV GL +P +I GW
Sbjct: 229 VRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGW 288
Query: 269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVP 328
SVFY FG LG WF + + L+ + + S + E + +P
Sbjct: 289 PSVFYSFGSLGSIWFLLWLKFAYSSPKDDPDLSEEEKKVILGGS------KPREPVTVIP 342
Query: 329 WKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLV 388
WK I VWA+I +HFC +WG + L+W+PTY+++ L NLTE+ + +LP L +
Sbjct: 343 WKLILSKPPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVF 402
Query: 389 TSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLA 448
+I AD L++ G+ T VRKI Q+I FL PA ++ L H + + +A
Sbjct: 403 ANIGGWIADTLVSRGLSITNVRKIMQSIGFLGPAFFLS------QLSHVKTPAMAVLCMA 456
Query: 449 LS----SFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVS 504
S +F+ SGLY HQDI P YA +LLG++NT G + G+ G A TGY+L SW
Sbjct: 457 CSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG-SWDDV 515
Query: 505 YQCPPRFY 512
++ Y
Sbjct: 516 FKVAVALY 523
|
Inorganic phosphate and probable anion transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W0H5|PHT43_ORYSJ Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (598), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 152/397 (38%), Positives = 212/397 (53%), Gaps = 14/397 (3%)
Query: 111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGG 170
+R K+ LA +CN D+V +SVAI+P+S +GW S AG+VQSSF WGY +S + GG
Sbjct: 96 ERVKVAAMLGLALALCNADRVVMSVAIVPLSQAYGWTPSFAGVVQSSFLWGYLVSPIIGG 155
Query: 171 WLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS-RVLVGIGEGVSPSAATDLIA 229
L +GG++V+ GV +WSLAT L P A L LS RVL+G+ EGV+ + +++
Sbjct: 156 ALVDYYGGKRVMAYGVALWSLATFLSPWAAARSLWLFLSTRVLLGMAEGVALPSMNNMVL 215
Query: 230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL 289
R P ERS AV G G+ GLLL+P I+ G F IFGL G W +
Sbjct: 216 RWFPRTERSSAVGIAMAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVLVWISA 275
Query: 290 QEGETSNGATLAPRS-NYINMKKSLSASLEEMGESLKDVPWKAIFRSK-AVWAMIYAHFC 347
G A ++ +YI + L + + GE L+ VP + SK WA+I A+
Sbjct: 276 ISGTPGENAQISAHELDYITRGQKLVKT-QSGGERLRKVPPFSKLLSKWPTWALISANAM 334
Query: 348 GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT 407
SWG++ LSW+P YF +NL EAAW S LP + ++ +A +D LI G T
Sbjct: 335 HSWGYFVILSWMPVYFKTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRLIQNGTSIT 394
Query: 408 MVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGI----LTAGLALSSFALSGLYCTHQD 463
+ RKI QTI F+ P V + LGL + I LT + L SF SG Q+
Sbjct: 395 LTRKIMQTIGFVGPGVAL------LGLNAAKSPVIASAWLTIAVGLKSFGHSGFLVNLQE 448
Query: 464 ISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHS 500
I+P+YA +L G++NT G I+G G+ +D S
Sbjct: 449 IAPQYAGVLHGMSNTAGTFAAILGTVGAGFFVDRMGS 485
|
Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7XJR2|ANTR3_ARATH Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 232 bits (592), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 164/491 (33%), Positives = 247/491 (50%), Gaps = 53/491 (10%)
Query: 26 AKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFD 85
A++N + + Y SE + R + + +K N E + VLTG G
Sbjct: 38 ARKNQIRCENLR-YSSESDGKRRNAAA--KKRNQSPERCAAEGVLTG----------GGG 84
Query: 86 SES-GQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRF 144
SE+ +VR +P+R K++ T+ +CN D+V +SVA++P++ +
Sbjct: 85 SEAIAEVR--------------TMMPERIKVVILTACMMCLCNADRVVMSVAVVPLADKL 130
Query: 145 GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP 204
GW+SS G+VQSSF WGY S + GG L +GG++VL GV +WSLAT L P A
Sbjct: 131 GWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLATLLTPWAAAHST 190
Query: 205 -GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII 263
L+ R G+ EGV+ + T L++R P++ER+ AV G G+V GLLL P ++
Sbjct: 191 LALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLML 250
Query: 264 ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGE- 322
++G F +F LG+ W S + S+G T P+ + + L L + G+
Sbjct: 251 SSIGISGPFILFASLGLLWVSTW--------SSGVTNNPQDSPFITRSEL--RLIQAGKP 300
Query: 323 ------SLKDVPWKAIFRSK-AVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAA 375
S K P + SK WA+I+A+ +WG++ LSW+P YF ++NL +AA
Sbjct: 301 VQPSTISPKPNPSLRLLLSKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQAA 360
Query: 376 WVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLP 435
W S LP + A +D LI TG T VRKI Q+I F+ P ++L ++
Sbjct: 361 WFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMGPG--LSLLCLNFAKS 418
Query: 436 HWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLL 495
+T L+LSSF+ +G QDI+P+YA L GI+N G + IV TGY +
Sbjct: 419 PSCAAVFMTIALSLSSFSQAGFLLNMQDIAPQYAGFLHGISNCAGTLAAIVSTIGTGYFV 478
Query: 496 DSTHSWSVSYQ 506
W S+Q
Sbjct: 479 Q----WLGSFQ 485
|
Inorganic phosphate and probable anion transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q53WP9|PHT42_ORYSJ Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (564), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 141/403 (34%), Positives = 213/403 (52%), Gaps = 19/403 (4%)
Query: 109 IPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLP 168
+P+R K++ + ++CN D+V +SVA++P + ++GW+SS G+VQSSF WGY S +
Sbjct: 119 LPERAKVVALVAAVMLLCNADRVVMSVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMV 178
Query: 169 GGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS-RVLVGIGEGVSPSAATDL 227
GG LA +GG+KV+ +WSLAT L P A ++L+ R L G+ EGV+ +
Sbjct: 179 GGALADRYGGKKVMAGAAALWSLATFLTPWAASQSTIMLLAIRALFGLAEGVAFPTMSTF 238
Query: 228 IARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFK 287
+ + P ER+ AV GG G+V L P I+ ++G F F LG W S +
Sbjct: 239 LPKWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAFFASLGYLWLSVWL 298
Query: 288 ILQEGETSNGATLAPRS-NYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346
E + + T++ I +S S SL++ I +WA+I A+
Sbjct: 299 FNVESDPLDSRTISKSELQLILAGRSASKIQGSKFPSLRE-----ILSKIEMWAIIVANV 353
Query: 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET 406
+WG++ LSW+P YF ++NL +AAW S +P L +A AD LI +G
Sbjct: 354 VNNWGYFVLLSWMPVYFKTVYNVNLKQAAWFSAIPWAVMALSGYVAGASADFLIKSGFSV 413
Query: 407 TMVRKICQTIAFLSPAV---CMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQD 463
+VRKI Q+I F+ P V C+ + P V ++T L+LSSF+ +G +C QD
Sbjct: 414 ALVRKIMQSIGFIGPGVSLLCLRFAQT----PSVAAV-LMTIALSLSSFSQAGYFCNVQD 468
Query: 464 ISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQ 506
I+P+YA L G+TN +G V IV TGY + W S+Q
Sbjct: 469 IAPKYAGSLHGLTNGIGTVAAIVSTIGTGYFVQ----WLGSFQ 507
|
Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q66GI9|ANTR4_ARATH Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 138/395 (34%), Positives = 207/395 (52%), Gaps = 18/395 (4%)
Query: 111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGG 170
+R K++ +LA +CN D+V +SVAI+P+S GW+ S +G+VQSSF WGY +S + GG
Sbjct: 110 ERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLWGYLISPIAGG 169
Query: 171 WLAKIFGGRKVLQTGVLIWSLATALLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIA 229
L +GG+ V+ GV +WSLAT L P A + L+ +R +VG+ EGV+ +++A
Sbjct: 170 TLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGVALPCMNNMVA 229
Query: 230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL 289
R P ERSRAV G G+V GL+L+P ++ G F IFGL G W ++
Sbjct: 230 RWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSGFLWL----LV 285
Query: 290 QEGETSNGATLAPRSN-----YINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYA 344
TS+ P+ YI KK +S + + P+ + WA+I A
Sbjct: 286 WLSATSSAPDRHPQITKSELEYIKQKKQISTMENKRISTSGIPPFGRLLSKMPTWAVIVA 345
Query: 345 HFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV 404
+ SWG + LSW+P YF+ +NL +AAW S +P IA ++D LI G
Sbjct: 346 NSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSDLLIRRGT 405
Query: 405 ETTMVRKICQTIAFLSPAVC---MTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTH 461
T+ RKI Q+I F+ P + +T + L W L+ + L SF+ G
Sbjct: 406 SITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAW-----LSLAVGLKSFSHLGFLINL 460
Query: 462 QDISPEYASILLGITNTVGAVPGIVGVALTGYLLD 496
Q+I+PEY+ +L G+ T G + IVG G+ ++
Sbjct: 461 QEIAPEYSGVLHGMCLTAGTLAAIVGTVGAGFFVE 495
|
Inorganic phosphate and probable anion transporter. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 512 | ||||||
| 255586001 | 533 | Inner membrane transport protein yjjL, p | 0.982 | 0.943 | 0.741 | 0.0 | |
| 224120476 | 543 | predicted protein [Populus trichocarpa] | 0.998 | 0.941 | 0.737 | 0.0 | |
| 359484723 | 526 | PREDICTED: probable anion transporter 6, | 0.982 | 0.956 | 0.730 | 0.0 | |
| 224144091 | 535 | predicted protein [Populus trichocarpa] | 0.988 | 0.945 | 0.722 | 0.0 | |
| 356546138 | 525 | PREDICTED: probable anion transporter 6, | 0.966 | 0.942 | 0.697 | 0.0 | |
| 356562936 | 524 | PREDICTED: probable anion transporter 6, | 0.966 | 0.944 | 0.698 | 0.0 | |
| 449443273 | 538 | PREDICTED: probable anion transporter 6, | 0.896 | 0.853 | 0.726 | 0.0 | |
| 357478369 | 541 | hypothetical protein MTR_4g116030 [Medic | 0.917 | 0.868 | 0.703 | 0.0 | |
| 297812223 | 517 | hypothetical protein ARALYDRAFT_910078 [ | 0.937 | 0.928 | 0.672 | 0.0 | |
| 42567984 | 517 | putative anion transporter 6 [Arabidopsi | 0.947 | 0.938 | 0.673 | 0.0 |
| >gi|255586001|ref|XP_002533670.1| Inner membrane transport protein yjjL, putative [Ricinus communis] gi|223526438|gb|EEF28716.1| Inner membrane transport protein yjjL, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/519 (74%), Positives = 432/519 (83%), Gaps = 16/519 (3%)
Query: 1 MAKLTLGAEKF--FVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKEN 58
MAK TL K F F N ++ F + K + HL PS+ + RV CS+KEKEN
Sbjct: 1 MAKFTLINNKADNFCFLSNNTNTHASFFNNSCLKFKNSHLIPSKRILKFRVLCSVKEKEN 60
Query: 59 VKEETDKFDEVLTGLRVD---EPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKL 115
VKE +++ +EV++GLRV+ + G G DS G +EVG WPPWKNIPQRYKL
Sbjct: 61 VKE-SERVNEVVSGLRVEGLKQTGLQLGNDS------GLQEVGFDWNWPPWKNIPQRYKL 113
Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
IGTTSLAFVICNMDKVNLSVAIIPMSH+FGWN+S+AGLVQSSFFWGYALSQLPGGWL+KI
Sbjct: 114 IGTTSLAFVICNMDKVNLSVAIIPMSHQFGWNASMAGLVQSSFFWGYALSQLPGGWLSKI 173
Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
FGGRKVL+ GVL+WSLATA +PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIAR IPLE
Sbjct: 174 FGGRKVLKIGVLVWSLATAFVPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARLIPLE 233
Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
ERSRAV+FVFGGLS GSVAGLLLAPP+I+ GWESVFYIFG LGIAWF F+ L+E ++S
Sbjct: 234 ERSRAVAFVFGGLSVGSVAGLLLAPPLIQIFGWESVFYIFGFLGIAWFLTFQFLEEEQSS 293
Query: 296 N--GATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY 353
G T +P+S Y ++KS + SL E+ SLKDVPWKA F ++AVWAMIYAHFCGSWGHY
Sbjct: 294 FAIGPTASPQSTY--LEKSWNTSLPELSSSLKDVPWKAFFETRAVWAMIYAHFCGSWGHY 351
Query: 354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKIC 413
TCLSWLP+YFSEEL+LNLTEAAWVSILPPLASV VTSIAAQFADNLIA GVETT VRKIC
Sbjct: 352 TCLSWLPSYFSEELNLNLTEAAWVSILPPLASVFVTSIAAQFADNLIANGVETTTVRKIC 411
Query: 414 QTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILL 473
QT+AFLSPAVCMTLSS+DLGLP WEIVGIL+ GLALSSFALSGLYCTHQDISPEYASILL
Sbjct: 412 QTVAFLSPAVCMTLSSVDLGLPPWEIVGILSGGLALSSFALSGLYCTHQDISPEYASILL 471
Query: 474 GITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCPPRFY 512
GITNT GA+PGIVGVALTGYLLD+THSWS+S P F+
Sbjct: 472 GITNTAGAIPGIVGVALTGYLLDTTHSWSLSLFAPSIFF 510
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120476|ref|XP_002331057.1| predicted protein [Populus trichocarpa] gi|222872987|gb|EEF10118.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/521 (73%), Positives = 422/521 (80%), Gaps = 10/521 (1%)
Query: 1 MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVK 60
MA T AE F +H+T++ + S K L S+ RV C IKEKENV
Sbjct: 1 MANFTFKAENFSSLSHHTNTQTSLLNTTTSFKTNSLRLLHSKNSLTFRVWCGIKEKENVT 60
Query: 61 EETDKFDEVLTG-LRVDE----PGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKL 115
+++ +VLTG RVDE GS F+ + G G+ EVG WPPWKNIPQRYKL
Sbjct: 61 G-SERVPDVLTGPKRVDELDPKRGSSLDFEQKLGNDSGSSEVGFDWNWPPWKNIPQRYKL 119
Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
IGTTSLAFVICNMDKVNLSVAIIPMSH+FGWN+S AGLVQSSFFWGYALSQLPGGWLAKI
Sbjct: 120 IGTTSLAFVICNMDKVNLSVAIIPMSHQFGWNASTAGLVQSSFFWGYALSQLPGGWLAKI 179
Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIAR----S 231
FGGRKVL+ GVL WS+ATALLP LAG+MPGLVLSRVLVGIGEGVSPSAATDLIAR S
Sbjct: 180 FGGRKVLKFGVLTWSVATALLPFLAGYMPGLVLSRVLVGIGEGVSPSAATDLIARHTLMS 239
Query: 232 IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE 291
IPLEERSRAV+FVFGGLS GSV GLLLAPP+I+N GW SVFYIFG LG+AWF GF+ L+E
Sbjct: 240 IPLEERSRAVAFVFGGLSVGSVIGLLLAPPLIQNFGWASVFYIFGFLGLAWFLGFQYLEE 299
Query: 292 GETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG 351
G+ S+ A A R I+M+KS S SL +G SLKDVPWKA FR+ AVWAMIYAHFCGSWG
Sbjct: 300 GQASHSAKPASRPQSIHMEKSFSNSLAALGGSLKDVPWKAFFRTPAVWAMIYAHFCGSWG 359
Query: 352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRK 411
HY CLSWLP+YFSEELSLNLTEAAWVSILPPLASV VTS AAQ ADNLIA GVETT VRK
Sbjct: 360 HYNCLSWLPSYFSEELSLNLTEAAWVSILPPLASVFVTSFAAQLADNLIANGVETTTVRK 419
Query: 412 ICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASI 471
ICQTIAFLSPA+CMTLSS+DLGLP WEIVGILT GLALSSFALSGLYCTHQD+SPEYASI
Sbjct: 420 ICQTIAFLSPALCMTLSSVDLGLPPWEIVGILTCGLALSSFALSGLYCTHQDMSPEYASI 479
Query: 472 LLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCPPRFY 512
LLGITNTVGA+PGIVGVALTGYLLD+THSWS+S P F+
Sbjct: 480 LLGITNTVGAIPGIVGVALTGYLLDTTHSWSISLFAPSIFF 520
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484723|ref|XP_002263200.2| PREDICTED: probable anion transporter 6, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/512 (73%), Positives = 423/512 (82%), Gaps = 9/512 (1%)
Query: 1 MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVK 60
MAK E F +T+S S K ++ ++ S+ S+LRV +I+ KE+V
Sbjct: 1 MAKFAFTTENICCFPRHTNS----LFNNTSLKHRQLLIFSSKQRSQLRVFSAIRGKESVT 56
Query: 61 EETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTS 120
E + V+TGLRVDE + S S++ EVG WPPWKN+PQRYKLIGTTS
Sbjct: 57 ET----ESVITGLRVDELDN-SASASDAEGQEEGGEVGFDWNWPPWKNLPQRYKLIGTTS 111
Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 180
LAFV+CNMDKVNLSVAIIPMSH+FGWNSS AGLVQSSFFWGYALSQLPGGWLAKIFGGRK
Sbjct: 112 LAFVVCNMDKVNLSVAIIPMSHQFGWNSSTAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 171
Query: 181 VLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA 240
VL+ GVL WSLATAL+P+LAGFMPGLVLSR+LVGIGEGVSPSAATDLIARSIPLEERSRA
Sbjct: 172 VLEIGVLTWSLATALVPVLAGFMPGLVLSRILVGIGEGVSPSAATDLIARSIPLEERSRA 231
Query: 241 VSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATL 300
V+FVFGGLS GSV GLLLAPP+I+N GWE+VFYIFG+LGIAWF GF+ ++E + S A L
Sbjct: 232 VAFVFGGLSVGSVTGLLLAPPLIQNFGWEAVFYIFGILGIAWFLGFQFVKEEQPSFVADL 291
Query: 301 APRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLP 360
P S I+ KKSL+ SL+++ SLKDVPWKA F+++AVWAMIY HFCGSWGHYTCLSWLP
Sbjct: 292 IPWSRTISSKKSLNTSLKDLDASLKDVPWKAFFQTRAVWAMIYTHFCGSWGHYTCLSWLP 351
Query: 361 TYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLS 420
TYFSEEL+LNLTEAAWVS+LPPLAS+ VT+IA+Q ADNLIA GVETT VRKICQTIAFLS
Sbjct: 352 TYFSEELNLNLTEAAWVSVLPPLASIFVTTIASQLADNLIANGVETTTVRKICQTIAFLS 411
Query: 421 PAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVG 480
PAVCMTLSS+DLG+P WEIVGILT GLALSSFALSGLYCTHQDISPEYASILLGITNTVG
Sbjct: 412 PAVCMTLSSLDLGIPPWEIVGILTGGLALSSFALSGLYCTHQDISPEYASILLGITNTVG 471
Query: 481 AVPGIVGVALTGYLLDSTHSWSVSYQCPPRFY 512
AVPGIVGVALTG LLDSTHSWS+S P F+
Sbjct: 472 AVPGIVGVALTGSLLDSTHSWSLSLFAPSIFF 503
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224144091|ref|XP_002325183.1| predicted protein [Populus trichocarpa] gi|222866617|gb|EEF03748.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/518 (72%), Positives = 414/518 (79%), Gaps = 12/518 (2%)
Query: 1 MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVK 60
MA LTL A+ F +HNT++ VF S K + S + RV C +KEKENVK
Sbjct: 1 MANLTLKAKSFCSLSHNTNTQTSVFKTTTSFKNNSLNFLHSGNSLKFRVWCGVKEKENVK 60
Query: 61 EETDKFDEVLTGLR-VDE----PGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKL 115
E ++ +VL GL+ DE GS F+ G G+ EVG WPPWKNIP RYKL
Sbjct: 61 EG-ERVPDVLAGLKKADELDPKRGSSLDFEQRLGDDSGSSEVGFDWKWPPWKNIPLRYKL 119
Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
IGTTSLAFVICNMDKVNLSVAIIPMSH+FGWN+S AGLVQSSFFWGYALSQLPGGWLAKI
Sbjct: 120 IGTTSLAFVICNMDKVNLSVAIIPMSHQFGWNASTAGLVQSSFFWGYALSQLPGGWLAKI 179
Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
FGGRKVLQ GVL WS+ATALLP LAG+MPG VLSRVLVGIGEGVSPSAATDLIAR
Sbjct: 180 FGGRKVLQIGVLTWSVATALLPFLAGYMPGFVLSRVLVGIGEGVSPSAATDLIAR----- 234
Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
RSRAV+FVFGGLS GSV GLLLAPP+I+N GW SVFYIFG LG+AWF GF+ L+EG+ S
Sbjct: 235 HRSRAVAFVFGGLSVGSVTGLLLAPPLIQNFGWASVFYIFGFLGVAWFLGFQYLEEGQAS 294
Query: 296 NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355
A RS I +KS S +L E+G SLKDVPWKA F++ AVWAMIYAHFCGSWGHYTC
Sbjct: 295 FAAKPTSRSQTIYSEKSSSNALAELGGSLKDVPWKAFFQTPAVWAMIYAHFCGSWGHYTC 354
Query: 356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQT 415
LSWLP+YFSEELSLNLTEAAWVSILPPLASV VTSIAAQ AD LI+ GVE T VRKICQT
Sbjct: 355 LSWLPSYFSEELSLNLTEAAWVSILPPLASVFVTSIAAQLADKLISNGVEITTVRKICQT 414
Query: 416 IAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSG-LYCTHQDISPEYASILLG 474
IAFLSPA+CMTLSS+DLGLP WEIVGILTAGLALSSFALSG LYCTHQD+SPEYASILLG
Sbjct: 415 IAFLSPALCMTLSSVDLGLPPWEIVGILTAGLALSSFALSGRLYCTHQDMSPEYASILLG 474
Query: 475 ITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCPPRFY 512
ITNTVGA+PGIVG+ LTGYLLD+THSWS++ P F+
Sbjct: 475 ITNTVGAIPGIVGIPLTGYLLDTTHSWSIALFVPSIFF 512
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546138|ref|XP_003541488.1| PREDICTED: probable anion transporter 6, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/519 (69%), Positives = 415/519 (79%), Gaps = 24/519 (4%)
Query: 1 MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVK 60
MA+LTL + F+H + R +S Q+FH + S LR+S + +
Sbjct: 1 MARLTLRPDNSCFFSHTQRANSHTPFTRTTS-FQRFHFHLSSSNHTLRLSRIVSSAQQNA 59
Query: 61 EETDKFD------EVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYK 114
+ET + +VLT L+V+E V E + WPPWKN+PQRYK
Sbjct: 60 KETQRVSMAKAKAKVLTDLQVEE-------------VEKQHET-LSWNWPPWKNLPQRYK 105
Query: 115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK 174
LIGTTSLAF+ICNMDKVNLS+AIIPMSH+FGWNSS AGLVQSSFFWGYALSQLPGGWLAK
Sbjct: 106 LIGTTSLAFIICNMDKVNLSIAIIPMSHQFGWNSSTAGLVQSSFFWGYALSQLPGGWLAK 165
Query: 175 IFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL 234
IFGG VL+ GVLIWS+ATAL+P LAG+MPGL+LSRVLVGIGEGVSPSAATDLIARSIPL
Sbjct: 166 IFGGGAVLEVGVLIWSVATALVPFLAGYMPGLLLSRVLVGIGEGVSPSAATDLIARSIPL 225
Query: 235 EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGET 294
EERSRAV+ VFGGLS GSV GLLLAPP+I+NLGWESVFYIFGLLGIAWF GF++L+ GET
Sbjct: 226 EERSRAVALVFGGLSVGSVMGLLLAPPLIQNLGWESVFYIFGLLGIAWFLGFQVLEGGET 285
Query: 295 S-NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY 353
N +L+ + M +S SL E+ SLKDVPWKA F+++AVWAMIYAHFCGSWGHY
Sbjct: 286 QLNAESLSSAQDI--MTQSWKTSLRELNGSLKDVPWKAFFQNRAVWAMIYAHFCGSWGHY 343
Query: 354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKIC 413
CLSWLPT+FSEEL+LNLTEAAWVSILPPLAS+ VTS+AAQ ADNLI+ GVETT+VRKIC
Sbjct: 344 NCLSWLPTFFSEELNLNLTEAAWVSILPPLASIFVTSLAAQLADNLISRGVETTVVRKIC 403
Query: 414 QTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILL 473
Q+IAFLSPA+CMTLSS+DLGLP WEIVGILT+GLALSSFALSGLYCTHQD+SPEYASILL
Sbjct: 404 QSIAFLSPAICMTLSSLDLGLPPWEIVGILTSGLALSSFALSGLYCTHQDMSPEYASILL 463
Query: 474 GITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCPPRFY 512
GITNTVGA+PGIVGVALTGYLLDSTHSWS+S P F+
Sbjct: 464 GITNTVGAIPGIVGVALTGYLLDSTHSWSISLFAPSIFF 502
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356562936|ref|XP_003549724.1| PREDICTED: probable anion transporter 6, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/518 (69%), Positives = 414/518 (79%), Gaps = 23/518 (4%)
Query: 1 MAKLTLGAEKFFVFAH-NTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCS----IKE 55
MA+LTL + F+H + F + S +R FHL PS RLR+ S KE
Sbjct: 1 MARLTLRPDNSCFFSHIQRAYSHTPFTRTTSFQRFHFHLSPSNHTLRLRIVSSSQQNAKE 60
Query: 56 KENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKL 115
+ V K +VLT L+V+E + + WPPWKN+PQRYKL
Sbjct: 61 TQRVSMAKAK-AKVLTDLQVEE--------------MEKQHETLSWNWPPWKNLPQRYKL 105
Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
IGTTSLAFVICNMDKVNLS+AIIPMSH+FGWNS+ AGLVQSSFFWGYALSQLPGGWLAKI
Sbjct: 106 IGTTSLAFVICNMDKVNLSIAIIPMSHQFGWNSTTAGLVQSSFFWGYALSQLPGGWLAKI 165
Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
FGG VL+ GVLIWS+ATA +P ++G+MPGL+LSRVLVGIGEGVSPSAATDLIARSIPLE
Sbjct: 166 FGGGTVLEVGVLIWSVATAFVPFISGYMPGLLLSRVLVGIGEGVSPSAATDLIARSIPLE 225
Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
ERSRAV+FVFGGLS GSV GLLLAPP+I+NLGWESVFYIFGLLGIAWF GF++L+ GET
Sbjct: 226 ERSRAVAFVFGGLSVGSVMGLLLAPPLIQNLGWESVFYIFGLLGIAWFLGFQVLEGGETQ 285
Query: 296 -NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYT 354
N +L+ S+ M +S SL E+ SLK+VPWKA F+++AVWAMIYAHFCGSWGHY
Sbjct: 286 LNAESLS--SDQDTMTQSWKTSLRELNGSLKEVPWKAFFQNRAVWAMIYAHFCGSWGHYN 343
Query: 355 CLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQ 414
CLSWLPT+FSEEL+LNLTEAAWVSILPPLAS+ VT +AAQ ADNLI+ GVE T+VRKICQ
Sbjct: 344 CLSWLPTFFSEELNLNLTEAAWVSILPPLASIFVTGLAAQLADNLISRGVEATVVRKICQ 403
Query: 415 TIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLG 474
+IAFLSPA+CMTLSS+DLGLP WEIVGILT+GLALSSFALSGLYCTHQD+SPEYASILLG
Sbjct: 404 SIAFLSPAICMTLSSLDLGLPPWEIVGILTSGLALSSFALSGLYCTHQDMSPEYASILLG 463
Query: 475 ITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCPPRFY 512
ITNTVGAVPGIVGVALTGYLLDSTHSWS+S P F+
Sbjct: 464 ITNTVGAVPGIVGVALTGYLLDSTHSWSISLFAPSIFF 501
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443273|ref|XP_004139404.1| PREDICTED: probable anion transporter 6, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/482 (72%), Positives = 398/482 (82%), Gaps = 23/482 (4%)
Query: 47 LRVSCSIKEKENVKEETDKFDEVLTGLRVD---EPGSVSGFDSESGQVRGTEEVGRASYW 103
LRV CSIKEKENVK D VL+GLRVD GSVS +++ G +EVG W
Sbjct: 41 LRVCCSIKEKENVKGNED-ISPVLSGLRVDASERSGSVSKSENDLSSGHGIDEVGSNLNW 99
Query: 104 PPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYA 163
PPW+N+P RYKLIGTT+LAFVICNMDKVNLSVAIIPMSH+FGWNSSVAGLVQSSFFWGYA
Sbjct: 100 PPWRNVPDRYKLIGTTALAFVICNMDKVNLSVAIIPMSHQFGWNSSVAGLVQSSFFWGYA 159
Query: 164 LSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSA 223
+SQLPGGWLAKIFGGRKVL+ GVL WSLATAL+P LAG+MPGL+ SRVLVGIGEGVSPSA
Sbjct: 160 MSQLPGGWLAKIFGGRKVLEIGVLTWSLATALVPFLAGYMPGLIFSRVLVGIGEGVSPSA 219
Query: 224 ATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF 283
ATDLIARSIPL+ERSRAV+FVFGGLS GSV+GLLL+P +I+N GWESVFYIFG LGIAWF
Sbjct: 220 ATDLIARSIPLQERSRAVAFVFGGLSVGSVSGLLLSPSLIQNFGWESVFYIFGFLGIAWF 279
Query: 284 SGFKILQ-------------EGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWK 330
+GF+ L E E+ + + L + + K L+++ +LK+VPW+
Sbjct: 280 AGFQFLDGQSSGPLKSISVVESESDSDSVLPKKKSTTPFK------LQQLPAALKEVPWR 333
Query: 331 AIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTS 390
A VWAMIYAHFCGSWGHYTCLSWLPTYFSEEL+LNLTEAAWVSILPPLAS+ VTS
Sbjct: 334 AFLEYPPVWAMIYAHFCGSWGHYTCLSWLPTYFSEELNLNLTEAAWVSILPPLASIFVTS 393
Query: 391 IAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALS 450
IA+Q ADNLI+ GV+TT VRKICQT+AF+SPAVCMTLSS+DLGLP WE+VGILT+GLALS
Sbjct: 394 IASQLADNLISNGVDTTKVRKICQTVAFVSPAVCMTLSSVDLGLPPWEVVGILTSGLALS 453
Query: 451 SFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCPPR 510
SFALSGLYCTHQDISPEYAS+LLGITNTVGA+PGIVGVALTG+LLDSTHSWS+S P
Sbjct: 454 SFALSGLYCTHQDISPEYASVLLGITNTVGAIPGIVGVALTGFLLDSTHSWSISLFAPSI 513
Query: 511 FY 512
F+
Sbjct: 514 FF 515
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357478369|ref|XP_003609470.1| hypothetical protein MTR_4g116030 [Medicago truncatula] gi|355510525|gb|AES91667.1| hypothetical protein MTR_4g116030 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/499 (70%), Positives = 397/499 (79%), Gaps = 29/499 (5%)
Query: 28 RNSSKRQKFHLYPSEGCSRLR----VSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSG 83
+ + +R FH PS+ R + VSCS ++++KE +K + D V
Sbjct: 35 KTTFQRFHFHFTPSKLIHRTKQRTVVSCS-NTQQDIKETHNKLSKTKINALSDLDDDVEL 93
Query: 84 FDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHR 143
SG WP WKN+P RYKLIGTTSLAFVICNMDKVNLS+AIIPMSH+
Sbjct: 94 EQHLSGN------------WPSWKNLPLRYKLIGTTSLAFVICNMDKVNLSIAIIPMSHQ 141
Query: 144 FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFM 203
FGWNSS AGLVQSSFFWGYALSQLPGGWLAKIFGGR VL GVLIWS+ATAL+P LAG+M
Sbjct: 142 FGWNSSTAGLVQSSFFWGYALSQLPGGWLAKIFGGRNVLVVGVLIWSVATALVPFLAGYM 201
Query: 204 PGLVLSRVLVGIGEGVSPSAATDLIAR---------SIPLEERSRAVSFVFGGLSFGSVA 254
PGL+L+R+LVGIGEGVSPSAATDLIAR SIPLEERSRAV+FVFGGLS GSV
Sbjct: 202 PGLILTRILVGIGEGVSPSAATDLIARHVNIQIHFWSIPLEERSRAVAFVFGGLSVGSVL 261
Query: 255 GLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGA-TLAPRSNYINMKKSL 313
GLL APP+I+++GWESVFYIFGLLGIAWF GF+ L+EGET A + +P NM +S
Sbjct: 262 GLLFAPPLIQSIGWESVFYIFGLLGIAWFIGFQFLEEGETRLAAESFSPAQG--NMTQSW 319
Query: 314 SASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTE 373
SL+EM SLKDVPWKA F+S+AVWAMIYAHFCGSWGHYTCLSWLPTYFS+EL LNLTE
Sbjct: 320 QTSLKEMNSSLKDVPWKAFFQSRAVWAMIYAHFCGSWGHYTCLSWLPTYFSQELDLNLTE 379
Query: 374 AAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLG 433
AAWVSILPPLAS+ VTSIA+Q AD+LI+ GVETT VRKICQ+IAFLSPA+CMTL+S+DLG
Sbjct: 380 AAWVSILPPLASIFVTSIASQLADSLISKGVETTTVRKICQSIAFLSPALCMTLASLDLG 439
Query: 434 LPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGY 493
LP WE+VG+LT GLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGY
Sbjct: 440 LPPWEMVGLLTGGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGY 499
Query: 494 LLDSTHSWSVSYQCPPRFY 512
LLD THSWS+S P F+
Sbjct: 500 LLDMTHSWSISLYAPSIFF 518
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297812223|ref|XP_002873995.1| hypothetical protein ARALYDRAFT_910078 [Arabidopsis lyrata subsp. lyrata] gi|297319832|gb|EFH50254.1| hypothetical protein ARALYDRAFT_910078 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/525 (67%), Positives = 399/525 (76%), Gaps = 45/525 (8%)
Query: 1 MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKF----HLYPSEGCSRL---RVSCSI 53
MA+LTL F F+ + +Q F ++P + L RV CS
Sbjct: 1 MARLTLRPHNHF------------FSSPIHAHKQPFLSVYTIFPHHHHNPLIKSRVKCSA 48
Query: 54 KEKENVKEET-----DKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKN 108
E V+E D ++ L + E S E G WPPWKN
Sbjct: 49 SGTERVRESKKLPPKDPIEDPKPLLPIPEVLST--------------ETGFEQNWPPWKN 94
Query: 109 IPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLP 168
IPQRYKLIG TSLAFVICNMDKVNLS+AIIPMSH+FGW+SSVAGLVQSSFFWGYALSQLP
Sbjct: 95 IPQRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLP 154
Query: 169 GGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLI 228
GGWL+KIFGGRKVL+ GV WS ATAL+PLLAGFMPGL+ SR+LVGIGEGVSPSAATDLI
Sbjct: 155 GGWLSKIFGGRKVLEIGVFTWSFATALVPLLAGFMPGLIFSRILVGIGEGVSPSAATDLI 214
Query: 229 ARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI 288
AR+IP++ERSRAV FVFGGLS GSV GLLLAPPIIE WESVFY+FGLLG+ WF GF+
Sbjct: 215 ARTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQF 274
Query: 289 LQEGETSNGATLAPRSNYI-NMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFC 347
L E E S + N I N KS +A+ EE+G SLK++PWK+ F+S AVWAMIY HFC
Sbjct: 275 LNEEEVSY------KGNEISNSHKSENATKEELGSSLKEIPWKSFFQSSAVWAMIYTHFC 328
Query: 348 GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT 407
GSWGHYTCLSWLPTYFSE L+LNLTEAAWVSILPPLAS++VTS+A+QFAD LI GVETT
Sbjct: 329 GSWGHYTCLSWLPTYFSEALNLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVETT 388
Query: 408 MVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPE 467
VRKICQTIAF+SPA+CMTLSS+D+GLP WEIVGILTAGLALSSFALSGLYCTHQDISPE
Sbjct: 389 TVRKICQTIAFVSPAICMTLSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQDISPE 448
Query: 468 YASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCPPRFY 512
YASILLGITNTVGAVPGIVGVALTG+LLDSTHSW++S P F+
Sbjct: 449 YASILLGITNTVGAVPGIVGVALTGFLLDSTHSWTMSLFVPSIFF 493
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42567984|ref|NP_197538.2| putative anion transporter 6 [Arabidopsis thaliana] gi|122214318|sp|Q3E9A0.1|ANTR6_ARATH RecName: Full=Probable anion transporter 6, chloroplastic; AltName: Full=Phosphate transporter PHT4;5; Flags: Precursor gi|332005454|gb|AED92837.1| putative anion transporter 6 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/520 (67%), Positives = 397/520 (76%), Gaps = 35/520 (6%)
Query: 1 MAKLTLGAEKFFVFAHNTSSGRLVFAKRNS--SKRQKFHLYPSEGCSRLRVSCSIKEKEN 58
MA+LTL HN ++A + S F + + RV CS E
Sbjct: 1 MARLTLRP-------HNHFFSSPIYAHKQPFLSVYTIFPHHHQNPLIKSRVKCSASGTER 53
Query: 59 VKEET-----DKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRY 113
V+E D ++ L + E S E G WPPWKNIPQRY
Sbjct: 54 VRESKKLPPKDPIEDPKPQLPIPEVLST--------------ETGFEQNWPPWKNIPQRY 99
Query: 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLA 173
KLIG TSLAFVICNMDKVNLS+AIIPMSH+FGW+SSVAGLVQSSFFWGYALSQLPGGWL+
Sbjct: 100 KLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPGGWLS 159
Query: 174 KIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP 233
KIFGGRKVL+ GV WS ATAL+PLLAGFMPGL+ SR+LVGIGEGVSPSAATDLIAR+IP
Sbjct: 160 KIFGGRKVLEIGVFTWSFATALVPLLAGFMPGLIFSRILVGIGEGVSPSAATDLIARTIP 219
Query: 234 LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGE 293
++ERSRAV FVFGGLS GSV GLLLAPPIIE WESVFY+FGLLG+ WF GF+ L E E
Sbjct: 220 VKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQFLNEEE 279
Query: 294 TSNGATLAPRSNYINM-KKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH 352
S + N I+ KS +A+ EE+G SLK++PWK+ F+S AVWAMIY HFCGSWGH
Sbjct: 280 VSY------KGNEISTSHKSENATKEELGSSLKEIPWKSFFQSPAVWAMIYTHFCGSWGH 333
Query: 353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKI 412
YTCLSWLPTYFSE LSLNLTEAAWVSILPPLAS++VTS+A+QFAD LI GV+TT VRKI
Sbjct: 334 YTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVDTTTVRKI 393
Query: 413 CQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL 472
CQTIAF++PA+CMTLSS+D+GLP WEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL
Sbjct: 394 CQTIAFVAPAICMTLSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL 453
Query: 473 LGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCPPRFY 512
LGITNTVGAVPGIVGVALTG+LLDSTHSW++S P F+
Sbjct: 454 LGITNTVGAVPGIVGVALTGFLLDSTHSWTMSLFVPSIFF 493
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q3E9A0 | ANTR6_ARATH | No assigned EC number | 0.6730 | 0.9472 | 0.9381 | yes | no |
| Q0IZQ3 | PHT45_ORYSJ | No assigned EC number | 0.7225 | 0.6503 | 0.7070 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | scaffold_602135.1 | annotation not avaliable (517 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 512 | |||
| TIGR00894 | 465 | TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph | 5e-52 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 6e-40 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-38 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-34 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-20 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 2e-17 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 4e-14 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-12 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 7e-12 | |
| COG2271 | 448 | COG2271, UhpC, Sugar phosphate permease [Carbohydr | 4e-11 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 6e-11 | |
| TIGR00711 | 485 | TIGR00711, efflux_EmrB, drug resistance transporte | 5e-10 | |
| COG2223 | 417 | COG2223, NarK, Nitrate/nitrite transporter [Inorga | 3e-07 | |
| TIGR00710 | 385 | TIGR00710, efflux_Bcr_CflA, drug resistance transp | 1e-06 | |
| PRK03699 | 394 | PRK03699, PRK03699, putative transporter; Provisio | 1e-06 | |
| TIGR00886 | 366 | TIGR00886, 2A0108, nitrite extrusion protein (nitr | 3e-06 | |
| COG0738 | 422 | COG0738, FucP, Fucose permease [Carbohydrate trans | 5e-06 | |
| TIGR02332 | 412 | TIGR02332, HpaX, 4-hydroxyphenylacetate permease | 6e-06 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 7e-06 | |
| COG0477 | 338 | COG0477, ProP, Permeases of the major facilitator | 3e-05 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 3e-05 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 6e-05 | |
| TIGR00896 | 355 | TIGR00896, CynX, cyanate transporter | 7e-05 | |
| TIGR00890 | 377 | TIGR00890, 2A0111, oxalate/formate antiporter fami | 8e-05 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 1e-04 | |
| TIGR00900 | 365 | TIGR00900, 2A0121, H+ Antiporter protein | 1e-04 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 1e-04 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 2e-04 | |
| COG2807 | 395 | COG2807, CynX, Cyanate permease [Inorganic ion tra | 2e-04 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 3e-04 | |
| PRK11102 | 377 | PRK11102, PRK11102, bicyclomycin/multidrug efflux | 0.001 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 0.001 | |
| TIGR04259 | 405 | TIGR04259, oxa_formateAnti, oxalate/formate antipo | 0.002 | |
| PRK03633 | 381 | PRK03633, PRK03633, putative MFS family transporte | 0.002 | |
| TIGR00712 | 438 | TIGR00712, glpT, glycerol-3-phosphate transporter | 0.003 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 0.003 |
| >gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Score = 183 bits (465), Expect = 5e-52
Identities = 105/364 (28%), Positives = 179/364 (49%), Gaps = 12/364 (3%)
Query: 144 FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFM 203
F W+ ++ GL+ SS F+G + Q+P G+LA + + + G+ + S+ + ++P AG
Sbjct: 71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG 130
Query: 204 PGLVL-SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI 262
LV+ RV+ G+ +G A +I + P +ERSR + G G+ L ++ +
Sbjct: 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWL 190
Query: 263 IE-NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASL-EEM 320
E GW +FY+FG++G AW + + + S ++ KK +++SL +
Sbjct: 191 CESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCIS-----KFEKKYINSSLQGQK 245
Query: 321 GESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSIL 380
G + + +P KAI +S VWA+ +A F W + ++LPT+ S L ++ E +S L
Sbjct: 246 GSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSL 305
Query: 381 PPLASVLVTSIAAQFADNLIATGV-ETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEI 439
P L + L + A AD L ++ T RKI I L P + L +
Sbjct: 306 PYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY-LSAAFYLT 364
Query: 440 VGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLL--DS 497
+ ILT A+SS L+G+ D++P + + GIT G + G++ L G +L DS
Sbjct: 365 IIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDS 424
Query: 498 THSW 501
+ W
Sbjct: 425 KNVW 428
|
[Transport and binding proteins, Anions]. Length = 465 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 6e-40
Identities = 98/385 (25%), Positives = 165/385 (42%), Gaps = 10/385 (2%)
Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 180
L VI +D+ NLS A + G +++ G V S+F WGY + Q PGGWL FG RK
Sbjct: 1 LVTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK 60
Query: 181 VLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA 240
L ++IW + T L + L + RVL+G E ++A P ER+ A
Sbjct: 61 TLAVFIVIWGVFTGLQAFAGAY-VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATA 119
Query: 241 VSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW-FSGFKILQEGETSNGAT 299
VS G + G L I+ + W+ F I G+LGI W K + +
Sbjct: 120 VSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAK-W 178
Query: 300 LAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWL 359
L YI + L+ + + K K + + + VW + F + G L+W
Sbjct: 179 LTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWF 238
Query: 360 PTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFL 419
PTY +E L++ EA +++ LP + + + + +D L+ G RK T
Sbjct: 239 PTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARK---TAIIA 295
Query: 420 SPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTH-QDISPEYASIL-LGITN 477
+ + + + + + + ++ L + D +P + L G+ N
Sbjct: 296 GLVLSLLMFATNYVNIPYAALALVA--LGFFGLGAGAIGWALISDNAPGNIAGLTGGLIN 353
Query: 478 TVGAVPGIVGVALTGYLLDSTHSWS 502
++G + GIVG + G + +T S++
Sbjct: 354 SLGNLGGIVGPIVIGAIAATTGSFA 378
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 5e-38
Identities = 103/390 (26%), Positives = 165/390 (42%), Gaps = 56/390 (14%)
Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
+ L F + +D+ LS A+ ++ G ++S AGL+ S+F GYAL L G+L+
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
FG R+VL G+L+++L + LL + L++ R L+G+G G AA LIA P +
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFASSL-WLLLVGRFLLGLGGGALYPAAAALIAEWFPPK 119
Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
ER RA+ G G++ G LL + E+LGW +F I +LG+
Sbjct: 120 ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLA------------ 167
Query: 296 NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355
+ + R + + A F S+G+Y
Sbjct: 168 -------------------------------LLLLFLLR--LLLLLALAFFLLSFGYYGL 194
Query: 356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQT 415
L++LP Y E L L+ EA + L L +L + +D L R++
Sbjct: 195 LTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR--------RRLLLL 246
Query: 416 IAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGI 475
I L A+ + L ++ +V +L G L + L + PE G+
Sbjct: 247 IGLLLAALGLLLLAL-APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGL 305
Query: 476 TNTVGAVPGIVGVALTGYLLDSTHSWSVSY 505
NT G++ G +G L G LLD T + +
Sbjct: 306 FNTFGSLGGALGPLLAGLLLD-TGGYGGVF 334
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 2e-34
Identities = 82/367 (22%), Positives = 134/367 (36%), Gaps = 25/367 (6%)
Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 180
AF+ + + ++ G + + GL+ ++F GYAL+Q G L+ FG R+
Sbjct: 4 AAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRR 63
Query: 181 VLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA 240
VL G+L+++L LL + L++ RVL G+G G AA LIA P EER RA
Sbjct: 64 VLLIGLLLFALGLLLLLFASSL-WLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRA 122
Query: 241 VSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATL 300
+ + G G+ G LL + GW + F I +L + +L
Sbjct: 123 LGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALL----------- 171
Query: 301 APRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLP 360
VP + V ++ A + + L++LP
Sbjct: 172 -----LPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLP 226
Query: 361 TYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLS 420
Y E L L+ A + L L + + + +D L G ++ + L
Sbjct: 227 LY-QEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRL---GRRRRLLL----ALLLLI 278
Query: 421 PAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVG 480
A W +V +L G + E G+ NT G
Sbjct: 279 LAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAG 338
Query: 481 AVPGIVG 487
++ G +G
Sbjct: 339 SLGGALG 345
|
Length = 346 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 2e-20
Identities = 101/408 (24%), Positives = 151/408 (37%), Gaps = 36/408 (8%)
Query: 107 KNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSH---RFGWNSSVAGLVQSSFFWGYA 163
K RY+ L+F+I MD +L+ +G + G + S+ G A
Sbjct: 8 KQPLSRYQWR-AIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMA 66
Query: 164 LSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSA 223
L G LA G R+VL +L++S+ T L LA + L++ R L G+G G
Sbjct: 67 FGALFFGPLADRIGRRRVLLWSILLFSVFTLLC-ALATNVTQLLILRFLAGLGLGGLMPN 125
Query: 224 ATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGI--A 281
L++ P R AV +F G G+ G LA +I GW S+FY+ G+ +
Sbjct: 126 LNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLL 185
Query: 282 WFSGF------KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIF-- 333
L T+ N I + A + +++F
Sbjct: 186 LLLMRFLPESIDFLVS---KRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKA 242
Query: 334 -----RSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLV 388
++ + +F G Y +WLP EL +L+ AA L V+
Sbjct: 243 LFQGKTARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIG 301
Query: 389 TSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLA 448
+ I AD L G T + + A + V TL S L L I G G
Sbjct: 302 SIIFGWLADRL---GPRVTAL--LLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNG-- 354
Query: 449 LSSFALSGLYCTHQDISPEYA-SILLGITNTVGAVPGIVGVALTGYLL 495
SGLY P + +G +G + I+G L GYLL
Sbjct: 355 ----GQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYLL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 2e-17
Identities = 75/397 (18%), Positives = 135/397 (34%), Gaps = 38/397 (9%)
Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 180
+ + + + N ++A+ + G + + GL+ SSF Y +S+ G ++ R
Sbjct: 2 IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRV 61
Query: 181 VLQTGVLIWSLATALLPLLAGFMPGL---VLSRVLVGIGEGVSPSAATDLIARSIPLEER 237
L G+++ ++ L GF L L GI +G+ + + ER
Sbjct: 62 FLPIGLILCAIVN----LFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSER 117
Query: 238 SRAVSFVFGGLSFGSVAGLLLAPPII-----ENLGWESVFYIFGLLGIAW-FSGFKILQE 291
VSF + G L PP++ E W VF + G++ I F +L++
Sbjct: 118 GTWVSF----WNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRD 173
Query: 292 GETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG 351
S G L P N + A +E + K + + + +K +W + +
Sbjct: 174 SPQSCG--LPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVV 231
Query: 352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLI-ATGVETTMVR 410
L W P Y ++E + +A+W L L ++ T +A +D L +
Sbjct: 232 RTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFF 291
Query: 411 KICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYAS 470
++ L + + I L L G+ +
Sbjct: 292 MALIIVSLLVYWLNPAAN-----PLMDLICLFALGFLVYGPQMLIGV-----------IA 335
Query: 471 ILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQC 507
L G G VG YL + Y
Sbjct: 336 SELAPKKAAGTAAGFVG--FFAYLGGILAGLPLGYLA 370
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 4e-14
Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 158 FFWGYALSQL----PGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLV 213
GYAL QL G L FG + VL G+ I+ L+TA+ L+ + L+++R L
Sbjct: 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMF-ALSSNITVLIIARFLQ 61
Query: 214 GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY 273
G G + A LIA P EER A+ + G++ G + G L + + LGW + F
Sbjct: 62 GFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFL 121
Query: 274 IFGLLGIAWF-SGFKILQE 291
+L +A F +L E
Sbjct: 122 FLAILALAAFILLAFLLPE 140
|
Length = 141 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 42/144 (29%), Positives = 65/144 (45%)
Query: 140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL 199
+ G +++ AGL+ S F G L L GG L+ G R++L L+ + LL L
Sbjct: 202 LQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL 261
Query: 200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259
A + L+++ +L+G G G + A L + P E R A S G G LLA
Sbjct: 262 APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA 321
Query: 260 PPIIENLGWESVFYIFGLLGIAWF 283
+++ G+ VF I L +
Sbjct: 322 GLLLDTGGYGGVFLILAALALLAA 345
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 7e-12
Identities = 74/368 (20%), Positives = 136/368 (36%), Gaps = 41/368 (11%)
Query: 139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL 198
P++ G + AG + +++ G AL L R++L + ++ ++ L L
Sbjct: 38 PIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL 97
Query: 199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL 258
F L+L+R L G+ GV S A L AR +P +R RA++ VF GL+ +V G+ L
Sbjct: 98 APSFAV-LLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPL 156
Query: 259 APPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLE 318
+ + GW + F +L + L P SL L
Sbjct: 157 GTFLGQLFGWRATFLAIAVLALLAL----------LLLWKLLPPSEI----SGSLPGPLR 202
Query: 319 EMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVS 378
+ + R V + A F GH+ +++ + +++ + V
Sbjct: 203 TLL---------RLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVL 253
Query: 379 ILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWE 438
+ +A + + + AD R+ L + L+
Sbjct: 254 LAFGIAGFIGNLLGGRLAD---------RGPRRALIAALLLLALALLALTF----TGASP 300
Query: 439 IVGILTAGLALSSF--ALSGLYCTHQDISPEYASILLGITNTVGAVPGI-VGVALTGYLL 495
+ + L +F AL GL ++P+ A + + + GI +G AL G +L
Sbjct: 301 ALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNL-GIALGAALGGLVL 359
Query: 496 DSTHSWSV 503
D+ +
Sbjct: 360 DALGYAAT 367
|
Length = 394 |
| >gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 4e-11
Identities = 90/392 (22%), Positives = 148/392 (37%), Gaps = 51/392 (13%)
Query: 132 NLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191
N ++A+ + G + + G++ S+F Y +S+ G L+ R + G+++
Sbjct: 47 NFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL--- 103
Query: 192 ATALLPLLAGFMPGLVLSRVLVGI-----GEGVSPSAATDLIARSIPLEERSRAVSFV-- 244
+A++ +L GF P L L VL + G G P A T I +ER S
Sbjct: 104 -SAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCART--ITHWFSRKERGTWWSIWNT 160
Query: 245 ---FGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW-FSGFKILQEGETSNGATL 300
GG VA L + GW + FY G++ I +L++ S G L
Sbjct: 161 SHNIGGALAPLVALLAF---FAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEG--L 215
Query: 301 APRSNYIN-MKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWL 359
P Y + E G + + K + ++K +W + A+ Y W
Sbjct: 216 PPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWG 275
Query: 360 PTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLI-----ATGVETTMVRKICQ 414
P Y SE +L +A W L +A + T +A +D L + ++
Sbjct: 276 PLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASL 335
Query: 415 TIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLG 474
+ +L+P L +I L I+G L G + L GL + P+ A
Sbjct: 336 VLYWLAPNGSYLLDAILLF-----IIGFLIYGPQM----LIGLAAA--EFVPKKA----- 379
Query: 475 ITNTVGAVPGIVGVALTGYLL-DSTHSWSVSY 505
G G VG L YL+ + + Y
Sbjct: 380 ----AGTATGFVG--LFAYLIGAALAGLPLGY 405
|
Length = 448 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 6e-11
Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 24/173 (13%)
Query: 118 TTSLAFVICNMDKVNLS---VAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK 174
T L F++ ++ ++L VA M+ FG + + G S+ G L GG LA
Sbjct: 16 TIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLAD 75
Query: 175 IFGGRKVLQTGVL---IWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA-- 229
G +++L V ++SLATA A P L+++R+L G+G G A +LIA
Sbjct: 76 RIGRKRILIVSVALFGLFSLATAQ----AWDFPSLLVARLLTGVGLG---GALPNLIALT 128
Query: 230 -RSIPLEERSRAVSFVFGGLSFG----SVAGLLLAPPIIENLGWESVFYIFGL 277
++ R AVS ++ G+ FG SV G+L A + W +FY+ G+
Sbjct: 129 SEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA----GDAAWRHIFYVGGV 177
|
Length = 406 |
| >gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 8/181 (4%)
Query: 115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK 174
L L + +D ++VAI ++ G + S V +S+ A+S GWLAK
Sbjct: 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAK 62
Query: 175 IFGGRKVLQTGVLIWSLATALLPLLAGFMPG---LVLSRVLVGIGEGVSPSAATDLIARS 231
FG R++ ++L + LL G P +++ RV+ G G G + +
Sbjct: 63 RFGTRRLFLISTFAFTLGS----LLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNI 118
Query: 232 IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF-SGFKILQ 290
P E+R RA++ + G L IIEN W +F I +GI F IL
Sbjct: 119 YPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILP 178
Query: 291 E 291
Sbjct: 179 R 179
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485 |
| >gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 81/394 (20%), Positives = 144/394 (36%), Gaps = 40/394 (10%)
Query: 119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG 178
++LAF + M S + + FG + GL+ + AL +LP G+L FGG
Sbjct: 19 STLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGG 78
Query: 179 RKVLQTGVLIWSLATALLPLLAGFMPG---LVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
RK +L+ + L A P L++ +L+G+ G S + + P +
Sbjct: 79 RKWTILSMLLLLIPCLGL-AFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFP-K 135
Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
E+ + G + G L+AP + G+ + + G+ +A + G
Sbjct: 136 EKQGLALGIAGAGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195
Query: 296 NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355
A KA+F +K W + +F ++G +
Sbjct: 196 VPEHRASVK------------------PQLPAQLKAVFSNKDTWLLSLLYF-ATFGGFVG 236
Query: 356 LS-WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQ 414
S +LP Y + L+ A ++ L PL L + +D + G T+
Sbjct: 237 FSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI--GGRRVTLAV---- 290
Query: 415 TIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYC--THQDIS---PEYA 469
F+ A+ L S+ L ++ + L+ F +GL + I P+
Sbjct: 291 ---FVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKET 347
Query: 470 SILLGITNTVGAVPGIVGVALTGYLLDSTHSWSV 503
+ GI +G + G G LD T S++
Sbjct: 348 GAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTG 381
|
Length = 417 |
| >gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 51/210 (24%), Positives = 83/210 (39%), Gaps = 38/210 (18%)
Query: 151 AGLVQ---SSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV 207
A +VQ + + G+A QL G L+ +G R VL G+ I++L+ +L L+ + L+
Sbjct: 39 ASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS-SLGLALSNNIETLL 97
Query: 208 LSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL 266
+ R + G + S + + R I P EE SR S + L+ LL I+ L
Sbjct: 98 VLRFVQAFG-ASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL 156
Query: 267 GWESVFYIFGLLGIA-----WFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
W ++F L GI +F + P + + +S E
Sbjct: 157 SWHAIFAFLSLAGILLSALIFF----------------ILPETLPYEARIQISTYFETFL 200
Query: 322 ESLKDVPWKAIFRSKAVW--AMIYAHFCGS 349
+ +SK W A+IY G
Sbjct: 201 ---------LLLKSKMFWGYALIYGASFGG 221
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385 |
| >gnl|CDD|235151 PRK03699, PRK03699, putative transporter; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 44/221 (19%), Positives = 78/221 (35%), Gaps = 52/221 (23%)
Query: 169 GGWLAKIFGGRKVLQTG---VLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAAT 225
WL +I ++ L G +++ LA F ++ ++G+ G++ S T
Sbjct: 62 NAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFS----IAMFVLGVVSGITMSIGT 117
Query: 226 DLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII------ENLGWESVFYIFGLLG 279
LI E + R +F SF S+AG++ PII ++ W V+ GL+
Sbjct: 118 FLITHV--YEGKQRGSRLLFTD-SFFSMAGMIF--PIIAAYLLARSIEWYWVYACIGLVY 172
Query: 280 -----IAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFR 334
+ FS F L + + E+ G
Sbjct: 173 VAIFILTLFSEFPALGKHAPKADK---------------PVAKEKWGIG----------- 206
Query: 335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAA 375
V + A T +SW+P Y ++ ++L +A
Sbjct: 207 ---VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAG 244
|
Length = 394 |
| >gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 52/279 (18%), Positives = 88/279 (31%), Gaps = 25/279 (8%)
Query: 163 ALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPS 222
A+ ++ G+L FG R +L+ ++ L L+L R+ +GI G S +
Sbjct: 51 AVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA-GGSFA 109
Query: 223 AATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL------------GWES 270
+ I+ P + + A+ G + G + PPII +L GW
Sbjct: 110 SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAF 169
Query: 271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWK 330
V GI I GA P A +L D
Sbjct: 170 V---IVPAGILLLPALLIF-----FVGADTPPGKPATGKLSFKGARWSVGTGALGDQ--L 219
Query: 331 AIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEA-AWVSILPPLASVLVT 389
+FR + W + + S +F ++ L+ A A+ S+ L L
Sbjct: 220 KVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLG-GLLGSLAR 278
Query: 390 SIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLS 428
+ +D L + + + LS
Sbjct: 279 PLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLS 317
|
[Transport and binding proteins, Anions]. Length = 366 |
| >gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 50/235 (21%), Positives = 89/235 (37%), Gaps = 19/235 (8%)
Query: 151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL---PLLAGFMPGLV 207
A L+Q +FF GY + LP G L K G + + G+L++++ AL + LV
Sbjct: 50 ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLV 109
Query: 208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFV-----FGGLSFGSVAGLLLAPPI 262
+L G G+ +AA + E + ++ G + + L+ +
Sbjct: 110 ALFIL-ASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGV 168
Query: 263 IENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKK--SLSASLEEM 320
+ + I G + + IL L + I + K L + +
Sbjct: 169 ALTMSAAQILAIKGADASSVQFPYLIL-------AGLLVLLAVLILLSKLPDLQVAAPSL 221
Query: 321 GESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAA 375
G S ++F++K + + A F S+L +Y E L LN +AA
Sbjct: 222 GASGSAGL-SSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAA 275
|
Length = 422 |
| >gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 6e-06
Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 12/181 (6%)
Query: 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLA 173
+LI + F+ +D++N+ A + M G ++++ GL + F+ Y + +P +
Sbjct: 8 RLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIML 67
Query: 174 KIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP 233
I G R+ + +++W +A+ + A L L R+LVGI E + P
Sbjct: 68 AIIGARRWIAGIMVLWGIAST-ATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFP 126
Query: 234 LEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-----NL-GWESVFYIFG----LLGI-AW 282
R+RA + + GL+L+ I+ L GW+ +F + G +LG+ W
Sbjct: 127 AYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTW 186
Query: 283 F 283
F
Sbjct: 187 F 187
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 7e-06
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 170 GWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA 229
G LA FG + ++ ++ +S+ T L L +G + L LSR +VG+G + A+
Sbjct: 74 GLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIM-LTLSRFIVGMGMAGEYACASTYAV 132
Query: 230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL 278
S P +S+A +F+ G G++ P E GW + F++ GLL
Sbjct: 133 ESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV-GLL 180
|
Length = 426 |
| >gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 45.8 bits (107), Expect = 3e-05
Identities = 59/322 (18%), Positives = 114/322 (35%), Gaps = 11/322 (3%)
Query: 115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK 174
L + + ++ ++ ++ ++ + + GL+ S+FF GYA+ L G L
Sbjct: 5 LALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGD 64
Query: 175 IFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIGEGVSPSAATDLIARSIP 233
+G RKVL G+L++ L T LL L + L++ R+L G+G G A+ L++ P
Sbjct: 65 RYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFP 124
Query: 234 LE-ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEG 292
ER AV V G +A L ++ F L + ++
Sbjct: 125 EATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLLL 184
Query: 293 ETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRS---------KAVWAMIY 343
+ A P + + + + L + L + + + +
Sbjct: 185 DLLLAAPRLPLAVGLALIELGKLLLLLLILLLGGLVLLLLGLYLSAAGFGLRALLLGLGL 244
Query: 344 AHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG 403
A G L LP L+ A +L + L + +L+
Sbjct: 245 ALLALFVGALILLVLLPILLGAAGGLSALVGAAGGLLALILLGLAGLLGTLVGGSLLVDR 304
Query: 404 VETTMVRKICQTIAFLSPAVCM 425
+ ++ + L A+ +
Sbjct: 305 LGRSLGLRAILLAGALLLAILL 326
|
Length = 338 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 148 SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV 207
+ ++GL+ S F G + L G L FG +K L G +++ + L G ++
Sbjct: 45 TVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYML 104
Query: 208 -LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259
+ RV+VG+G G I+ P + R S G G+L+A
Sbjct: 105 IVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSL----YQLGITFGILVA 153
|
Length = 449 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 31/150 (20%), Positives = 64/150 (42%), Gaps = 10/150 (6%)
Query: 152 GLVQSSFFWGYALSQLPGGWLA-KIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLS 209
GL + Y L+ + GGWLA ++ G R+ + G ++ ++ +L + + GL +
Sbjct: 65 GLFSAYGSLVY-LTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIG 123
Query: 210 RVLVGIGEGVSPSAATDLIARSIPLEE--RSRAVSFVFGGLSFGSVAGLLLAPPIIENLG 267
L+ +G G+ + L+ P ++ R + + G++ GS+ ++ + N G
Sbjct: 124 LALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG 183
Query: 268 WESVFYIFGL-----LGIAWFSGFKILQEG 292
W F + + L I + G
Sbjct: 184 WHVGFGLAAVGMIIGLVIFLLGRRHVKGIG 213
|
Length = 498 |
| >gnl|CDD|129974 TIGR00896, CynX, cyanate transporter | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 7e-05
Identities = 72/361 (19%), Positives = 128/361 (35%), Gaps = 39/361 (10%)
Query: 145 GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP 204
G + SVAGL+ + +A+ WLA+ FG + + G+L+ +A +L A
Sbjct: 31 GMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLL--IAAGILIRSAPGTA 88
Query: 205 GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE 264
L L+G+G + LI R P + L G+ P+ +
Sbjct: 89 LLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQ 147
Query: 265 NLG--WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGE 322
+ G W+ +AW++ +L A LA +I + A+ +
Sbjct: 148 HSGGHWQQ--------ALAWWALPALL--------ALLA----WIPQVRRRVAA----NQ 183
Query: 323 SLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPP 382
+ + I+RS W + S +Y+ + WLP + A + L
Sbjct: 184 TTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISH-GASAATAGSLLALMQ 242
Query: 383 LASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGI 442
LA + A + V + Q + C L + GL W +V
Sbjct: 243 LAQAASALLIPALARRVKDQRG-IVAVLAVLQLVGL-----CGLLFAPMHGLWAWALVLG 296
Query: 443 LTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWS 502
L G +F L+ + A+ L + ++G + +G G L D + +W
Sbjct: 297 LGQG---GAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL 353
Query: 503 V 503
+
Sbjct: 354 M 354
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate [Transport and binding proteins, Other]. Length = 355 |
| >gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 8e-05
Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 2/140 (1%)
Query: 139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL 198
P+ FG + + + G A+S GG LA FG R V G +++ L +
Sbjct: 28 PLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAI 87
Query: 199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL 258
+ L L+ L G G++ A + + P ++R A + GG GS L
Sbjct: 88 ADS-LAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPL 145
Query: 259 APPIIENLGWESVFYIFGLL 278
+I G + F G++
Sbjct: 146 ITSVINLEGVPAAFIYMGII 165
|
This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 62/312 (19%), Positives = 104/312 (33%), Gaps = 42/312 (13%)
Query: 170 GWLAKIFGGRKVLQTGVLIWSLATALLPLLAG------FMPG-LVLSRVLVGIGEGVSPS 222
G G +K L +L+ + T L+ LL + P L+L+R++ G G
Sbjct: 56 GHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWG 115
Query: 223 AATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG---LLG 279
A +A P +R SF G+ GLLLA L + Y+ G LL
Sbjct: 116 GAALYLAEYAPPGKRGFYGSFQQ----VGAPVGLLLA-----ALTVLLLSYLLGDDALLE 166
Query: 280 IAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLK--DVPWKAIFRS-- 335
W F + A L Y+ + E+ E K P
Sbjct: 167 WGWRIPFLV--------SAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIAETLTKHR 218
Query: 336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQF 395
K + + Y ++LPTY ++ L L+ A V +L + + ++
Sbjct: 219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGAL 278
Query: 396 ADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALS 455
+D + G + I T+ AV + ++ +D G + + +
Sbjct: 279 SDRI---GRRPVL---IIFTVLAALLAVPLLMALLDSG-----SFTLFFFLVLGMALIGG 327
Query: 456 GLYCTHQDISPE 467
PE
Sbjct: 328 MYTGPMGSFLPE 339
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 32/128 (25%), Positives = 52/128 (40%)
Query: 140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL 199
S G S+ G V ++F G L L G L + F ++ + + LA ++ L
Sbjct: 238 QSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT 297
Query: 200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259
P ++ +G+G G L+ R +P E R F GL+LA
Sbjct: 298 PPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILA 357
Query: 260 PPIIENLG 267
P+ ++LG
Sbjct: 358 GPLADHLG 365
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 14/143 (9%)
Query: 145 GWNSSVAGLVQSSFFWGYALSQLPGGWLA-KIFGGRKVLQTG---VLIWSLATALLPLLA 200
G++ A ++ ++ L G W +++G +K + G +++ A+
Sbjct: 44 GFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPD 103
Query: 201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR---AVSFVFGGLSFGSVAGLL 257
GL + +G G+ + + ++ + + R + + ++ GS L
Sbjct: 104 LIFYGLGT----IAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPL 159
Query: 258 LAPPIIENLGWESVFYIFGLLGI 280
LA I EN G+ F L +
Sbjct: 160 LAGVIAENYGYH---VGFNLAAV 179
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 138 IPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP 197
++ ++SS+ GLV S F G + L GWL+ FG +K L L++ + L+
Sbjct: 60 FTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMG 119
Query: 198 LLAGFMPGLVL--SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAG 255
L A + +L RVL+GIG G++ + ++ P R S G
Sbjct: 120 LAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLY----QLAITFG 175
Query: 256 LLLA 259
+L+A
Sbjct: 176 ILVA 179
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 78/385 (20%), Positives = 132/385 (34%), Gaps = 76/385 (19%)
Query: 140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL 199
+ G + SVAGL+ + + L LA+ FG + L +L+ + + L
Sbjct: 38 IRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG 97
Query: 200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFG--GLSFGSVAGL- 256
P L L +L G G V LI R P + V + G S G+ A L
Sbjct: 98 GL--PLLFLGTLLAGAGIAVINVLLPSLIKRDFP-----KRVGLMTGLYSTSLGAGAALA 150
Query: 257 -LLAPPIIENL-GWESVFYIFGLLG----IAWFSGFKILQEGETSNGATLAPRSNYINMK 310
LA P+ ++ GW + LL + W + L+E S L
Sbjct: 151 AALAVPLAQHSGGWRGALGFWALLALLALLIWL--PQALREQAASIATKLVSVRK----- 203
Query: 311 KSLSASLEEMGESLKDVPWKAIFRSKAVWA-MIYAHFCGSWGHYTCLSWLPTYF-----S 364
++RS W ++ S +Y + WLP S
Sbjct: 204 ---------------------VWRSPLAWQVTLFMGL-QSLLYYIVIGWLPAILIDRGLS 241
Query: 365 EELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVC 424
+ +L + + + ++L+ +A + + + + L A+
Sbjct: 242 AAEAGSLL--SLMQLAQLPTALLIPLLARRSKN---------------QRPLVVL--ALL 282
Query: 425 MTLSSIDLGLPHWEIVGILTAGLAL-----SSFALSGLYCTHQDISPEYASILLGITNTV 479
+ L + +GL + L L +F L+ + A+ L G+ V
Sbjct: 283 LMLVGL-VGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGV 341
Query: 480 GAVPGIVGVALTGYLLDSTHSWSVS 504
G + G L G+L D+T SWS
Sbjct: 342 GYLLAAFGPWLFGFLHDATGSWSAP 366
|
Length = 395 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 10/110 (9%)
Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPG---LVLSRVLVGIG-EGVSPSAATDLIARS 231
+G R + ++++S+ T L GF PG L ++R+++G+G G S+AT +I S
Sbjct: 82 YGRRLAMVISIVLFSVGT----LACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVI-ES 136
Query: 232 IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIA 281
P R++A F+ G S G+V + ++ GW ++F+I G+L I
Sbjct: 137 WPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI-GILPII 185
|
Length = 496 |
| >gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 151 AGLVQ---SSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV 207
AG VQ S++ G+A+ QL G +A FG + V+ G L+++LA L + L+
Sbjct: 25 AGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT-IDQLI 83
Query: 208 LSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN- 265
R L G+ + S + + R + P EE SR +SFV L ++A LL PII
Sbjct: 84 YMRFLHGLA-AAAASVVINALMRDMFPKEEFSRMMSFVT--LVM-TIAPLL--APIIGGW 137
Query: 266 ----LGWESVFYIFGLLGI 280
W ++F++ L I
Sbjct: 138 LLVWFSWHAIFWVLALAAI 156
|
Length = 377 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 147 NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGL 206
++ L QS FF G L G+L+ FG +KVL L+ +L TA+ +L F P
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVL----LLSTLVTAVSGVLTAFSPNY 180
Query: 207 ---VLSRVLVGIGE-GVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259
++ R+LVG+G G+ A L +P ++R+ + + S G V L+A
Sbjct: 181 TVFLVFRLLVGMGIGGIWVQAVV-LNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVA 236
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 2/140 (1%)
Query: 139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL 198
P+ GW + + + F GW +G R V+ G ++ L L
Sbjct: 28 PIDATHGWGRAAIQVAFTLFVVTETWLVPIEGWFVDKYGPRIVVMFGGIMCGLGWVLNAY 87
Query: 199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL 258
A +P L + V+ GIG G + P ++R A G G+ ++
Sbjct: 88 -ADSLPALYAAAVVAGIGAGAVYGTCVGNALKWFP-DKRGLAAGLTAAGFGAGAALTVVP 145
Query: 259 APPIIENLGWESVFYIFGLL 278
+I+ G+++ F FGL
Sbjct: 146 IAAMIKVSGYQAAFMYFGLG 165
|
This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405 |
| >gnl|CDD|179614 PRK03633, PRK03633, putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSR 210
G+V SS+F G + L G++ K G + LI++ A L L+ GF + R
Sbjct: 43 VGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGF-WSWLAWR 101
Query: 211 VLVGIG 216
+ GIG
Sbjct: 102 FVAGIG 107
|
Length = 381 |
| >gnl|CDD|129795 TIGR00712, glpT, glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 65/312 (20%), Positives = 114/312 (36%), Gaps = 29/312 (9%)
Query: 138 IPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP 197
+P G++ G S+ Y S+ G ++ R L G+++ +A +
Sbjct: 50 MPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL----SAAVM 105
Query: 198 LLAGFMP----GLVLSRVLVGI-----GEGVSPSAATDLIARSIPLEERSRAVSFVFGGL 248
LL GF+P + + VL+ + G G P T + ER VS
Sbjct: 106 LLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRT--MVHWWSQSERGTIVSIWNCAH 163
Query: 249 SFGS-VAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYI 307
+ G + LL+ + W + Y + I + F +T L P Y
Sbjct: 164 NIGGGIPPLLVLLGMAWFNDWHAALYFPAICAII-VALFAFAMMRDTPQSCGLPPIEEYR 222
Query: 308 NMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEEL 367
N E + K++ + + +K +W + A+ Y L W PTY E
Sbjct: 223 NDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVK 282
Query: 368 SLNLTEAAWVSILPPLASVLVTSIAAQFADNLI-----ATGVETTMVRKICQTIAFLSPA 422
L +++W L A + T + +D + ATGV + I + +++PA
Sbjct: 283 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPA 342
Query: 423 -------VCMTL 427
+CM +
Sbjct: 343 GNPLVDMICMIV 354
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar [Transport and binding proteins, Other]. Length = 438 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.003
Identities = 35/163 (21%), Positives = 78/163 (47%), Gaps = 17/163 (10%)
Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSS-VAGLVQSSFFWGYALSQLPGGWLAKIFGGR 179
L +++ D +++ + ++ FG + A L+ ++ + + + G W + GR
Sbjct: 19 LGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY--GR 76
Query: 180 KV-LQTGVLIWSLATALLPLLAGFMPG---LVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
++ + T ++++S T L GF PG + ++R+++GIG G ++ + S P
Sbjct: 77 RLPMVTSIVLFSAGT----LACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH 132
Query: 236 ERSRAVSFVFGGLSFG----SVAGLLLAPPIIENLGWESVFYI 274
R++A + G + G + L+ P + GW ++F+I
Sbjct: 133 LRNKASGLLISGYAVGAVVAAQVYSLVVP--VWGDGWRALFFI 173
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 512 | |||
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 100.0 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.98 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.98 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.98 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.98 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.98 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.98 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.97 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.97 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.97 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.97 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.97 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.97 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.97 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.96 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.96 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.96 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.95 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.95 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.95 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.95 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.94 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.94 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.93 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.93 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.92 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.91 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.91 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.91 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.9 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.9 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.9 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.9 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.89 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.89 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.89 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.88 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.87 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.87 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.87 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.87 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.86 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.85 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.85 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.83 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.82 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.82 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.79 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.78 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.77 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.77 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.76 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.74 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.63 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.62 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.6 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.59 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.59 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.57 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.56 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.55 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.54 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.53 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.53 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.52 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.52 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.5 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.5 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.49 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.49 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.49 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.49 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.49 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.49 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.47 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.47 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.47 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.46 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.46 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.46 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.46 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.45 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.45 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.44 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.43 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.43 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.43 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.43 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.41 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.41 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.41 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.4 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.39 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.35 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.34 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.33 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.33 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.32 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.32 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.32 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.31 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.31 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.3 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.3 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.29 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.29 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.29 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.28 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.27 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.27 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.27 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.27 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.26 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.26 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.26 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.26 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.25 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.24 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.24 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.23 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.22 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.19 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.19 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.19 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.19 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.18 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.16 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.16 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 99.14 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.13 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.13 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.13 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.11 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.11 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.1 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.1 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.1 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.09 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.09 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 99.09 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.08 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 99.07 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.07 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.07 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.02 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.01 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.01 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.01 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 99.01 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.0 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.99 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.97 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.96 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.95 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.95 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.94 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.94 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.93 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.93 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.93 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.9 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.87 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.85 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.83 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.79 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.77 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.75 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.75 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.74 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.72 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.71 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.71 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.71 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.7 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.7 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.69 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.64 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.63 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.59 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.54 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.5 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.47 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.44 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.42 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.41 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.39 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.39 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.37 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.3 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.28 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.27 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.16 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.09 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.08 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 98.01 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.95 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.93 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.91 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.79 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.79 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.52 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 97.34 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.34 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.22 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 97.16 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.14 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 96.99 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.96 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 96.9 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.87 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.71 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.64 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.49 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.48 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.43 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 95.95 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 95.82 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.68 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.51 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.45 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 94.91 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 94.08 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 93.88 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 93.83 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 92.67 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 92.11 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 91.9 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 90.0 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 87.47 | |
| PF06912 | 209 | DUF1275: Protein of unknown function (DUF1275); In | 86.78 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 86.64 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 86.58 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 85.58 | |
| PF07857 | 254 | DUF1632: CEO family (DUF1632); InterPro: IPR012435 | 83.47 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 81.47 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 81.08 | |
| KOG1307 | 588 | consensus K+-dependent Ca2+/Na+ exchanger NCKX1 an | 80.98 |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=304.87 Aligned_cols=388 Identities=17% Similarity=0.205 Sum_probs=312.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 191 (512)
|+++++.+.+.+...++.+.+++.+.|.+.++.++|.+|.|++.+++.++|.++.++.|.++||.+.|+.+.+++++.++
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai 106 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHH
Confidence 56788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhh--HHhccccCch
Q 010350 192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA--PPIIENLGWE 269 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~l~~~~gw~ 269 (512)
..++++ ++++.+.+.++.++.|.+.|.-+|++...+..|++++|||+..++++...++|+.+.|++. +++..+.+||
T Consensus 107 ~nil~G-fs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~ 185 (448)
T COG2271 107 VNILFG-FSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWR 185 (448)
T ss_pred HHHHHh-hhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchh
Confidence 999986 5567899999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhc-CCCCCccHHHHhhcHhHHHHHHHHHHh
Q 010350 270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG-ESLKDVPWKAIFRSKAVWAMIYAHFCG 348 (512)
Q Consensus 270 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (512)
..|++.++++++..+..++.-+++|++..-. +.|+....+.....+.++.+ .+.++.-++.+++||.+|.++++.++.
T Consensus 186 ~~f~~pgiiaiival~~~~~~rd~Pqs~GLP-~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfv 264 (448)
T COG2271 186 AAFYFPGIIAIIVALILLFLLRDRPQSEGLP-PIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFV 264 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccccCCC-CHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 9999999999887766666554444332111 11111000000000000000 122334567889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHh
Q 010350 349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLS 428 (512)
Q Consensus 349 ~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (512)
+.+-+++..|.|.|+.|..|+|..+++...+.+-+++++|.+++|+++||+.+.+ |....++..+...+++...
T Consensus 265 YivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr------R~p~~~i~~~~i~~~~~~~ 338 (448)
T COG2271 265 YVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGR------RGPMALIFMLLITASLVLY 338 (448)
T ss_pred HHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc------cchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999997542 3333344444444455544
Q ss_pred hccCCCC-hHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhch-hhhhHHhhhhhcccccCcceEEEE
Q 010350 429 SIDLGLP-HWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAV-PGIVGVALTGYLLDSTHSWSVSYQ 506 (512)
Q Consensus 429 ~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~i~p~i~G~l~~~~g~~~~~f~ 506 (512)
...+... ....+.+++.|+...+-....-..+.+..|++-.|++.|+...++++ |.+.+....|++.|.+| |...|+
T Consensus 339 w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g-W~g~Fi 417 (448)
T COG2271 339 WLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG-WDGGFI 417 (448)
T ss_pred HcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC-CcchHH
Confidence 4444332 33344555566655545555555566778889999999999999999 99999999999999988 888776
Q ss_pred ec
Q 010350 507 CP 508 (512)
Q Consensus 507 ~~ 508 (512)
+.
T Consensus 418 ~~ 419 (448)
T COG2271 418 VL 419 (448)
T ss_pred HH
Confidence 54
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=309.99 Aligned_cols=386 Identities=19% Similarity=0.243 Sum_probs=283.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 191 (512)
+|+++..+++.+++.++++.+++...|.+.+++|+|..+.|++.+++.+++.+++++.|++.||+|||+++.++.+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 85 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI 85 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence 56788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcc------c
Q 010350 192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE------N 265 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~------~ 265 (512)
+.++.+ .+++++.+++.|++.|++.+...+....++.|++|+++|+++++++..+..+|.++++++++++.+ .
T Consensus 86 ~~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 164 (412)
T TIGR02332 86 ASTATM-FATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMAL 164 (412)
T ss_pred HHHHHH-HhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 988775 567789999999999999999999999999999999999999999999999999999999998864 4
Q ss_pred cCchHHHHHHHHHHHHHHH-HHHhhccCCCCCCCCCCcchhhhhhhhh--hhhhHHhhcC--CCC----CccHHHHhhcH
Q 010350 266 LGWESVFYIFGLLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKS--LSASLEEMGE--SLK----DVPWKAIFRSK 336 (512)
Q Consensus 266 ~gw~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~----~~~~~~~~~~~ 336 (512)
.|||+.|++.++..++..+ ..++++|++++.+ ...+++++...+.. ...+.++.++ +.. ...++++ +++
T Consensus 165 ~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 242 (412)
T TIGR02332 165 KGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAK-WLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREI-FTP 242 (412)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhccCCCcccCC-CCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHh-cCh
Confidence 6999999998888766544 3445555543221 11111111000000 0000000000 000 1123343 367
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-cCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHH
Q 010350 337 AVWAMIYAHFCGSWGHYTCLSWLPTYFSEE-LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQT 415 (512)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 415 (512)
.+|...+..++.....+.+.+|+|.|+++. .+++..+++.+.+...++.+++.++.|+++||+++| + ....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r-------~-~~~~ 314 (412)
T TIGR02332 243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKER-------K-HHTA 314 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCcc-------H-HHHH
Confidence 888888888888888999999999999873 367888899999999999999999999999999754 2 1112
Q ss_pred HHhHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcc
Q 010350 416 IAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLL 495 (512)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~ 495 (512)
...+...+.+.+.. ........+....+.+++.............+..|+++|+++.|+.++..++|++++|.+.|.+.
T Consensus 315 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~ 393 (412)
T TIGR02332 315 LPYLFAAAGWLLAS-ATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILK 393 (412)
T ss_pred HHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccccc
Confidence 22222222222221 12222222222222222211111111122234578899999999999999999999999999999
Q ss_pred cccCcceEEEEecC
Q 010350 496 DSTHSWSVSYQCPP 509 (512)
Q Consensus 496 ~~~g~~~~~f~~~~ 509 (512)
|..|+|+..|.+.+
T Consensus 394 ~~~g~~~~~~~~~~ 407 (412)
T TIGR02332 394 DATGSFNSGLWFVA 407 (412)
T ss_pred ccCCCCchhHHHHH
Confidence 99988988876554
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=286.39 Aligned_cols=356 Identities=20% Similarity=0.262 Sum_probs=289.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT 193 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 193 (512)
..+..+.++.|............+|++.+|+|+|..+.|++.|+|.+++.++.++...+.||+.||++++....++.++.
T Consensus 13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n 92 (394)
T COG2814 13 LALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSN 92 (394)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 55667778888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHH
Q 010350 194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY 273 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~ 273 (512)
+++ .+++|++.+++.|++.|+..|.+++...++.+++.|+++|++++++...+..++.++|.+++.++.+.+|||+.|+
T Consensus 93 ~l~-alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~ 171 (394)
T COG2814 93 LLS-ALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL 171 (394)
T ss_pred HHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence 777 5788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHH
Q 010350 274 IFGLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH 352 (512)
Q Consensus 274 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (512)
+.++++++..+. +..+|+++..+....+.+ ...+.+|+|.++...+..++...+.
T Consensus 172 ~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~~------------------------~~~~~l~~p~v~~~l~~t~l~~~g~ 227 (394)
T COG2814 172 AIAVLALLALLLLWKLLPPSEISGSLPGPLR------------------------TLLRLLRRPGVLLGLLATFLFMTGH 227 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCccCCCCCCcchh------------------------HHHHHhcCchHHHHHHHHHHHHcch
Confidence 999998876554 445551111111111100 1267899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccC
Q 010350 353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDL 432 (512)
Q Consensus 353 ~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (512)
+...+|+.+++++..|++....+++...+++++++|..++|++.|| +.+ +... ....+.+..+.......
T Consensus 228 F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~--------~~l~-~~~~l~a~~~l~l~~~~ 297 (394)
T COG2814 228 FALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR--------RALI-AALLLLALALLALTFTG 297 (394)
T ss_pred hhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch--------hHHH-HHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999 542 2322 22223333333333333
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEE
Q 010350 433 GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQ 506 (512)
Q Consensus 433 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~ 506 (512)
.+.....+..++.++..............+ ..|+.+..+.+++....|+|..+|..++|.++|++| |....+
T Consensus 298 ~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g-~~~~~~ 369 (394)
T COG2814 298 ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG-YAATGW 369 (394)
T ss_pred chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHH
Confidence 333333333444444443333333333333 557999999999999999999999999999999977 654443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=313.32 Aligned_cols=375 Identities=11% Similarity=0.054 Sum_probs=274.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 191 (512)
.++++..+++.+++.++++.+++...|.+.+++|+|..+.|++.+++.+++.++++++|+++||+|||+++.++.+++++
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 106 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI 106 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence 34567778888888899999999999999999999999999999999999999999999999999999999998888777
Q ss_pred HHHHHHHh----hhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcccc-
Q 010350 192 ATALLPLL----AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL- 266 (512)
Q Consensus 192 ~~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~- 266 (512)
+..+.+.. +++++.++++|++.|++.+...+...+++++++|+++|++++|++..+..+|.+++++++.++.+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~ 186 (467)
T PRK09556 107 CMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF 186 (467)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc
Confidence 77655432 4678999999999999999999999999999999999999999999999999999999988776653
Q ss_pred --CchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCC-Cc-cHHHHhhcHhHHHHH
Q 010350 267 --GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLK-DV-PWKAIFRSKAVWAMI 342 (512)
Q Consensus 267 --gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~ 342 (512)
+||..|.+.+++.++..+..+++.++++++....++++ .... .....+.+..+++.. .. ..+..+|+|.+|...
T Consensus 187 ~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 264 (467)
T PRK09556 187 DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEE-IFGE-PISEEDKETESTDMTKWQIFVEYVLKNPVIWLLC 264 (467)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhh-cccC-ccchhhhccccccCcHHHHHHHHHHcChHHHHHH
Confidence 69999988888777665554444332222211111111 0000 000000000000000 01 123378999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHH
Q 010350 343 YAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPA 422 (512)
Q Consensus 343 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~ 422 (512)
+..++.....++...|+|.|+++.+|++..+++.......++.+++.++.|+++||+++|+ ............
T Consensus 265 ~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~-------~~~~~~~~~~~~ 337 (467)
T PRK09556 265 FANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRR-------ALVACIALALII 337 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-------hHHHHHHHHHHH
Confidence 9998888888889999999999889999999999999999999999999999999998652 111111111111
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhch-hhhhHHhhhhhccc
Q 010350 423 VCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAV-PGIVGVALTGYLLD 496 (512)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~i~p~i~G~l~~ 496 (512)
..+.... ...+.....+..++.|++.............+..|++.+|++.|+.++++++ |++++|.+.|++.|
T Consensus 338 ~~~~~~~-~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 338 FTLGVYQ-HATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHHHHHH-hcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 1111111 1122223334444444332222222223445778999999999999999997 77999999999999
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=304.06 Aligned_cols=395 Identities=26% Similarity=0.409 Sum_probs=293.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc----------------------ccCCCchhhHHHHHHHHHHHHHh
Q 010350 108 NIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSH----------------------RFGWNSSVAGLVQSSFFWGYALS 165 (512)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~g~s~~~~~~~~s~~~~~~~~~ 165 (512)
..+.|+.+..++++++...+.++.+++...+.+.+ +++++..+.|++.+.+.+++.++
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~ 92 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII 92 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence 34457788888888888889999999999888876 88999999999999999999999
Q ss_pred hhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHH
Q 010350 166 QLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFV 244 (512)
Q Consensus 166 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 244 (512)
++++|+++||+|||+++.++.++++++.++.... ..++..+++.|+++|++.+...+....++++++|+++|++++++.
T Consensus 93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 172 (465)
T TIGR00894 93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS 172 (465)
T ss_pred HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999999999999888887665432 344678999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHhhhhHHhccc-cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHh-hcC
Q 010350 245 FGGLSFGSVAGLLLAPPIIEN-LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEE-MGE 322 (512)
Q Consensus 245 ~~~~~~g~~~~~~~~~~l~~~-~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 322 (512)
..+..+|.+++|++++.+.+. .|||+.|++.+++.++..+.++.+++++++..++..++++.. ..+..++ .++
T Consensus 173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-----i~~~~~~~~~~ 247 (465)
T TIGR00894 173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKY-----INSSLQGQKGS 247 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHH-----HHhhcccccCC
Confidence 999999999999999999988 499999999999887776666665544333222211111100 0000011 111
Q ss_pred CCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHc
Q 010350 323 SLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT 402 (512)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~ 402 (512)
..++.+++++++++.+|...+..++.....+.+.+|+|.|+++.+|++..+.+++.+++.++.+++.++.|+++||+++|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~ 327 (465)
T TIGR00894 248 TRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSS 327 (465)
T ss_pred CCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 12234689999999999999999999999999999999999998999999999999999999999999999999999876
Q ss_pred CCCccch-hHHHHHHHhHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhc
Q 010350 403 GVETTMV-RKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGA 481 (512)
Q Consensus 403 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 481 (512)
+...... ++....++....++...............++.+.+.+.+.+.. .........+..++.+|.+.|+.++.+.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 406 (465)
T TIGR00894 328 KTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGP-LAGVLINSLDLAPRFLGFIKGITGLPGF 406 (465)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhh-hhhhhhchhhcChhHHHHHHHHHHHHHH
Confidence 5432211 1222222222112222111111122222222233323222222 2223233344567799999999999999
Q ss_pred hhhhhHHhhhhhccccc--CcceEEEEec
Q 010350 482 VPGIVGVALTGYLLDST--HSWSVSYQCP 508 (512)
Q Consensus 482 lg~~i~p~i~G~l~~~~--g~~~~~f~~~ 508 (512)
+|+.++|.+.|++.+.. ++|...|++.
T Consensus 407 l~~~i~p~l~g~~~~~~~~~~~~~~f~~~ 435 (465)
T TIGR00894 407 IGGLIASTLAGNILSQDSKNVWLIVFLIM 435 (465)
T ss_pred HHHHHHHHhhheeeCCCCchHHHHHHHHH
Confidence 99999999999998864 4466665544
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=296.70 Aligned_cols=366 Identities=35% Similarity=0.628 Sum_probs=308.9
Q ss_pred hcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhhccc
Q 010350 141 SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIGEGV 219 (512)
Q Consensus 141 ~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~l~G~~~~~ 219 (512)
..+++.|..+.+++.+.++.|+++++++.|+++||+|.|+++..+.++.+++.++.+..++. ++.+++.|+++|++.+.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 34788999999999999999999999999999999999999999999999999888766543 35789999999999999
Q ss_pred chhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccc-cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 010350 220 SPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LGWESVFYIFGLLGIAWFSGFKILQEGETSNGA 298 (512)
Q Consensus 220 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (512)
.+|....+.+.|.|++||++..++..++..+|.+++-+++|++.+. +||+++||+.+++++++.++++++..+.+.+.+
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~ 224 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHP 224 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 9999999999999999999999999999999999999999999998 999999999999999998888887776666655
Q ss_pred CCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHh
Q 010350 299 TLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVS 378 (512)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~ 378 (512)
...++|.+...+.. .++..++..+.||+++++++.+|.+.+..++...+.+.+..|+|.|+++++|++..+.|++.
T Consensus 225 ~is~~El~~I~~~k----~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~s 300 (466)
T KOG2532|consen 225 NISEKELKYIEKGK----SEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLS 300 (466)
T ss_pred CCCHHHHHHHHhcc----cccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHH
Confidence 54444432111110 11111111577999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhh
Q 010350 379 ILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLY 458 (512)
Q Consensus 379 ~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 458 (512)
+++.+...+..+++|.++||...|....+..||....++....+++++..........+..+.++....+..+.......
T Consensus 301 alP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~ 380 (466)
T KOG2532|consen 301 ALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFY 380 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhH
Confidence 99999999999999999999988766677778999989988888888877665543444444455555566666666666
Q ss_pred hHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhccc-c-cCcceEEEEecCc
Q 010350 459 CTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLD-S-THSWSVSYQCPPR 510 (512)
Q Consensus 459 ~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~-~-~g~~~~~f~~~~~ 510 (512)
....+..|++.+.++|+.+.+..+.++++|.+.|.+.. . ..+|+.+|++.++
T Consensus 381 ~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~ 434 (466)
T KOG2532|consen 381 KNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAG 434 (466)
T ss_pred hhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHH
Confidence 66665589999999999999999999999999999994 2 2368888877654
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=300.55 Aligned_cols=387 Identities=15% Similarity=0.145 Sum_probs=280.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 191 (512)
|++.+....+.++..+++...++..+|.+.+++|+|..+.+++.+++.+++.+++++.|++.||+|||+++.++.++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence 45666677778888888888999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHH
Q 010350 192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV 271 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~ 271 (512)
+.++.+ .+++++.+++.|++.|++.+...+...+++.+++++++|++++++++.+..+|.+++|.+++++.+.+|||+.
T Consensus 101 ~~~~~~-~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~ 179 (434)
T PRK11663 101 INILFG-FSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYG 179 (434)
T ss_pred HHHHHH-HHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 887765 5677788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCC-ccH-HHHhhcHhHHHHHHHHHHh
Q 010350 272 FYIFGLLGIAWF-SGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKD-VPW-KAIFRSKAVWAMIYAHFCG 348 (512)
Q Consensus 272 f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~ 348 (512)
|++.+++.++.. +..++++++++.......++.+.... + ...+..++..+. ..+ ...++++.+|...+..++.
T Consensus 180 f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (434)
T PRK11663 180 MMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDAL-E---LAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLV 255 (434)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccccccc-c---cchhccccCCChhhhHHHHHhcChHHHHHHHHHHHH
Confidence 999888766543 33444555432211111000000000 0 000000000000 111 2366789999888888887
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHh
Q 010350 349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLS 428 (512)
Q Consensus 349 ~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (512)
....+.+.+|+|.|+++.+|++..+++...+...++.++++++.|++.||+.+++... ......++......++.
T Consensus 256 ~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~---~~~~~~~~~~~~~~~~~-- 330 (434)
T PRK11663 256 YVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGP---MNLIFAAGILLSVGSLW-- 330 (434)
T ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccH---HHHHHHHHHHHHHHHHH--
Confidence 7888888899999998778999999999999999999999999999999985432100 01111112111111111
Q ss_pred hccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEEec
Q 010350 429 SIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCP 508 (512)
Q Consensus 429 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~~~ 508 (512)
.....+..+.....+..|++.............+..+++++|++.|+.++..++|++++|.+.|++.|..| |+..|++.
T Consensus 331 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g-~~~~f~~~ 409 (434)
T PRK11663 331 LMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH-WTGFFVVI 409 (434)
T ss_pred HcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc-cHHHHHHH
Confidence 11121212222222223322211111222344566778999999999999999999999999999999988 87776655
Q ss_pred C
Q 010350 509 P 509 (512)
Q Consensus 509 ~ 509 (512)
+
T Consensus 410 ~ 410 (434)
T PRK11663 410 S 410 (434)
T ss_pred H
Confidence 4
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=296.82 Aligned_cols=382 Identities=25% Similarity=0.414 Sum_probs=286.4
Q ss_pred HHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhh
Q 010350 123 FVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202 (512)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 202 (512)
++..+++...++...|.+.+++|.|..+.+++.+++.++..++.+++|+++||+|||+++.++.++.+++..+.+ ..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~-~~~~ 81 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA-FAGA 81 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH-HHcC
Confidence 456678888999999999999999999999999999999999999999999999999999999999888887775 5567
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHH
Q 010350 203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW 282 (512)
Q Consensus 203 ~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~ 282 (512)
++.++++|++.|++.+...+....++.|++|+++|++++++......+|.+++|.+++.+.+..+||+.|++.+++.++.
T Consensus 82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (399)
T TIGR00893 82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIW 161 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999988887765
Q ss_pred HHHHHh-hccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHH
Q 010350 283 FSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPT 361 (512)
Q Consensus 283 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 361 (512)
.+...+ .++++++ ++...++++....++...+..++.++......+++.+++|+++...+..++..........+.|.
T Consensus 162 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (399)
T TIGR00893 162 GVLWLKFIPDPPQK-AKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPT 240 (399)
T ss_pred HHHhhheecCCCCc-cccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 554444 3433322 11111111111000000000011111223345678899999999999999999999999999999
Q ss_pred HHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCChHHHHH
Q 010350 362 YFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVG 441 (512)
Q Consensus 362 ~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (512)
|+++.+|.+..+.+.+.+...++.+++.++.+++.||+++|+..... .........+. .++...........+..+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 317 (399)
T TIGR00893 241 YLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVF-ARKTAIIAGLV--LSLLMFATNYVNIPYAALA 317 (399)
T ss_pred HHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH-HHHHHHHHHHH--HHHHHHHhccchhHHHHHH
Confidence 99988899999999999999999999999999999999986411100 00111111111 1111111111122333333
Q ss_pred HHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEEecC
Q 010350 442 ILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCPP 509 (512)
Q Consensus 442 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~~~~ 509 (512)
....+.+.....+.......+..|+++|+++.|+.+.+.++|+.++|.+.|.+.|..|+|+..|.+.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~ 385 (399)
T TIGR00893 318 LVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVA 385 (399)
T ss_pred HHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHH
Confidence 33333333335566666777888999999999999999999999999999999999886776665443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=295.63 Aligned_cols=374 Identities=17% Similarity=0.131 Sum_probs=290.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 191 (512)
++..+..+++..++..++.++++.++|.+.+++|.+..+.+|+.+.+.+++.++.+++|+++||+|||++++++.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhc-CccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchH
Q 010350 192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES 270 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~ 270 (512)
+.++++ .+++++.++++|+++|++.+...+.....+.+.+ |+++|++++|++.....+|..+||.+++++.++.||||
T Consensus 84 ~~~~~~-~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~ 162 (495)
T PRK14995 84 ASLAAA-FSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGS 162 (495)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH
Confidence 987775 6678899999999999999998888888887776 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHhhccCCCCCCCCCCcchhhhh-----------hhh---hh-hh-----------------hH
Q 010350 271 VFYIFGLLGIAWFSG-FKILQEGETSNGATLAPRSNYIN-----------MKK---SL-SA-----------------SL 317 (512)
Q Consensus 271 ~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~---~~-~~-----------------~~ 317 (512)
.|++...+.++.++. .+++|++++++.++ .+...... ..+ .. .. ..
T Consensus 163 ~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~-~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~ 241 (495)
T PRK14995 163 VFLINVPIVLVVMGLTARYVPRQAGRRDQP-LNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIR 241 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCC-CChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHH
Confidence 999988776655443 34445433221111 11100000 000 00 00 00
Q ss_pred HhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHh
Q 010350 318 EEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFAD 397 (512)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d 397 (512)
.+.+....-.+ .+++|+|.++...+..++.....++...++|.|+++.+|+++.++|+...+..++..++.++.|++.|
T Consensus 242 ~e~~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~ 320 (495)
T PRK14995 242 TQLAASRPMID-MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVS 320 (495)
T ss_pred HHhcCCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111112 46889999988888888888888888999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCccchhHHHHHHHhHHHHHHHHHh-hccCCCCh-HHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHH
Q 010350 398 NLIATGVETTMVRKICQTIAFLSPAVCMTLS-SIDLGLPH-WEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGI 475 (512)
Q Consensus 398 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 475 (512)
|+++| .....+.++..+..... ........ ......++.|++.+...+.........+|+++++.+.++
T Consensus 321 r~g~~---------~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~ 391 (495)
T PRK14995 321 RLGLR---------LVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAI 391 (495)
T ss_pred HcCch---------HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHH
Confidence 99753 22233333333333222 22222223 334456677888777777777777777899999999999
Q ss_pred HHhhhchhhhhHHhhhhhcccc
Q 010350 476 TNTVGAVPGIVGVALTGYLLDS 497 (512)
Q Consensus 476 ~~~~~~lg~~i~p~i~G~l~~~ 497 (512)
.++..++|+.+|+.+.|.+.+.
T Consensus 392 ~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 392 ETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999864
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=290.24 Aligned_cols=358 Identities=18% Similarity=0.174 Sum_probs=272.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHH
Q 010350 113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 192 (512)
+..+..+.++.+..........+.+|.+.+++|.|..+.+++.+.+.+++.++++++|++.||+|||+++..+.++++++
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 87 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIAS 87 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 33444444444444444445566789999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHH
Q 010350 193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF 272 (512)
Q Consensus 193 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f 272 (512)
.+++. .+++++.++++|+++|++.+...+...+++.|++|+++|++++|++..+..+|.+++|++++.+.+++|||+.|
T Consensus 88 ~~~~~-~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f 166 (390)
T PRK03545 88 HVLSA-LAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTF 166 (390)
T ss_pred HHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHH
Confidence 87764 56778999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-hccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHH
Q 010350 273 YIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG 351 (512)
Q Consensus 273 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (512)
++.++++++..+..+. +|++++++ +.. ...+++.+|+|.++......++....
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~~~~~------~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (390)
T PRK03545 167 LAIGGGALITLLLLIKLLPLLPSEH------SGS--------------------LKSLPLLFRRPALVSLYLLTVVVVTA 220 (390)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCC------cch--------------------HHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 9999887665544333 34322110 000 01135678899888776666666666
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhcc
Q 010350 352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID 431 (512)
Q Consensus 352 ~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (512)
.+....++|.++++..|++..+++.+.....+++++++.+.+++.||++++ .... +..............
T Consensus 221 ~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~---------~~~~-~~~~~~~~~~~l~~~ 290 (390)
T PRK03545 221 HFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG---------FLLI-AIALLLVCLLLLLPA 290 (390)
T ss_pred HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh---------HHHH-HHHHHHHHHHHHHHH
Confidence 677778889998887899999999999999999999999999999998643 2222 222222222222111
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEEecC
Q 010350 432 LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCPP 509 (512)
Q Consensus 432 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~~~~ 509 (512)
..+....++..++.|++.....+.......+ ..|+.++++.|+++...++|..+||.++|.+.|..| ++..|.+.+
T Consensus 291 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~ 366 (390)
T PRK03545 291 ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLK-LAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGA 366 (390)
T ss_pred hchHHHHHHHHHHHHHHHhcchHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHH
Confidence 2223334445555566555444444444444 456789999999999999999999999999999987 777665543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=298.65 Aligned_cols=377 Identities=13% Similarity=0.129 Sum_probs=274.3
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHH
Q 010350 110 PQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW 189 (512)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 189 (512)
+..|.++++++++.+...++...++..+|.+.+++|++..+.+++.+++.++++++++++|+++||+|||++++++.+++
T Consensus 163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~ 242 (742)
T TIGR01299 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN 242 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 33456666677777777788888999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccc----
Q 010350 190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN---- 265 (512)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---- 265 (512)
+++.++.+ ++++++.++++|++.|++.++..+...++++|++|+++|++.++++.++..+|.++++.++..+...
T Consensus 243 ~i~~ll~a-fa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~ 321 (742)
T TIGR01299 243 GFFAFFSS-FVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWS 321 (742)
T ss_pred HHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 88887764 5667899999999999999999999999999999999999999999999999999999887766543
Q ss_pred ---------cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcch--hhhhhhh------------h-----hhhhH
Q 010350 266 ---------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRS--NYINMKK------------S-----LSASL 317 (512)
Q Consensus 266 ---------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------~-----~~~~~ 317 (512)
.+||+.+++.++..++.++..+++||+++....+.+.++ +.+++.. . .....
T Consensus 322 ~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~ 401 (742)
T TIGR01299 322 FQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIH 401 (742)
T ss_pred hccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhh
Confidence 368999998888777777777888887653211111000 0000000 0 00000
Q ss_pred --H---hhcCCCCC-----------------ccHHHHhhc---HhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh----c-
Q 010350 318 --E---EMGESLKD-----------------VPWKAIFRS---KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE----L- 367 (512)
Q Consensus 318 --~---~~~~~~~~-----------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----~- 367 (512)
+ +.++.... ..++.+++. +..+.+++.+++..+++|++..|+|.++++. +
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~ 481 (742)
T TIGR01299 402 QEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYA 481 (742)
T ss_pred hhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000000 023344443 3446677788889999999999999987541 0
Q ss_pred ----------------CCCh------------------------------------------------------------
Q 010350 368 ----------------SLNL------------------------------------------------------------ 371 (512)
Q Consensus 368 ----------------g~s~------------------------------------------------------------ 371 (512)
+++.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 561 (742)
T TIGR01299 482 ALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDF 561 (742)
T ss_pred hhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccch
Confidence 0000
Q ss_pred ---------------------------------hhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHh
Q 010350 372 ---------------------------------TEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAF 418 (512)
Q Consensus 372 ---------------------------------~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 418 (512)
....+...+..++.+++.+++++++||+|+| ..+.++.
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr---------~~l~~~~ 632 (742)
T TIGR01299 562 EEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRL---------RMLAGSM 632 (742)
T ss_pred hhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH---------HHHHHHH
Confidence 0123345566788999999999999999854 3444555
Q ss_pred HHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccc
Q 010350 419 LSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDS 497 (512)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~ 497 (512)
++.+++.++..... +....++..++.+++.+...........+.+|++.|++++|+.++...+|++++|.++|.+.+.
T Consensus 633 ~lsai~~ll~~~~~-s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~ 710 (742)
T TIGR01299 633 VLSCISCFFLSFGN-SESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI 710 (742)
T ss_pred HHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555544443322 2233344444556555556666666778889999999999999999999999999999998875
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=286.18 Aligned_cols=388 Identities=14% Similarity=0.157 Sum_probs=278.3
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHH
Q 010350 111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS 190 (512)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 190 (512)
.+++.+..+.+.++..+++...+++..|.+.+++|.|..+.+++.+++.++..++++++|+++||+|||++++++.++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~ 88 (405)
T TIGR00891 9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFS 88 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 35677888889999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccC--c
Q 010350 191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG--W 268 (512)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--w 268 (512)
++.++.. ..++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+.+..+ |
T Consensus 89 ~~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w 167 (405)
T TIGR00891 89 AGTLACG-FAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGW 167 (405)
T ss_pred HHHHHHH-HhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence 8887764 566778999999999999999999999999999999999999999999999999999999999988766 9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCC--ccHHHHh-hcH-hHHHHHHH
Q 010350 269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKD--VPWKAIF-RSK-AVWAMIYA 344 (512)
Q Consensus 269 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~-~~~~~~~~ 344 (512)
|+.|++.++..++..+....+||+++.+.....++......++..... ...++..++ ...++.. +++ .+....+.
T Consensus 168 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (405)
T TIGR00891 168 RALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGE-HRIANIVMTLAAAMVQSAGKRWPTFVYLVVL 246 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccc-hhhhhhhhhhhHHhhhhhhhhhHHHHHHHHH
Confidence 999988766655555555555654332111110000000000000000 000000000 0001111 111 12223333
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHH-HH
Q 010350 345 HFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSP-AV 423 (512)
Q Consensus 345 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~ 423 (512)
..+..........++|.|+.+.+|++..+.+.+.+...++.++++++.+++.||+++|+ . ...+.+.. ..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~--------~-~~~~~~~~~~~ 317 (405)
T TIGR00891 247 VLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRK--------A-YVCSLLAGQLL 317 (405)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--------h-hHHHHHHHHHH
Confidence 33444455567788999998888999999999999999999999999999999998642 2 22222222 11
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceE
Q 010350 424 CMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSV 503 (512)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~ 503 (512)
.+..... ..+.....+..++.+++.+...........+..|+++++++.|+.+.+.++|+.++|.+.|.+.|..|+|+.
T Consensus 318 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~ 396 (405)
T TIGR00891 318 IIPVFAI-GANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGT 396 (405)
T ss_pred HHHHHHh-CCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 1112221 122222233334444444444445555667778999999999999999999999999999999999998887
Q ss_pred EEEecCc
Q 010350 504 SYQCPPR 510 (512)
Q Consensus 504 ~f~~~~~ 510 (512)
.+....+
T Consensus 397 ~~~~~~~ 403 (405)
T TIGR00891 397 ALASLSF 403 (405)
T ss_pred hHHhhcc
Confidence 7766543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=286.20 Aligned_cols=374 Identities=18% Similarity=0.223 Sum_probs=276.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhh
Q 010350 122 AFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG 201 (512)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 201 (512)
.++..++++..++...|.+.+++|.|..+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.++.. ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~ 81 (379)
T TIGR00881 3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFG-FST 81 (379)
T ss_pred hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHH-Hhh
Confidence 4567778999999999999999999999999999999999999999999999999999999999999888887775 556
Q ss_pred hHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHh-hhhHHhccccCchHHHHHHHHHHH
Q 010350 202 FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGL-LLAPPIIENLGWESVFYIFGLLGI 280 (512)
Q Consensus 202 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~gw~~~f~~~~~~~~ 280 (512)
+++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..++| .+++.+.+..+||+.|++.+++.+
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAI 161 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 7799999999999999999999999999999999999999999999999999999 577777788899999999888776
Q ss_pred HHHHHHH-hhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHH
Q 010350 281 AWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWL 359 (512)
Q Consensus 281 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (512)
+..+..+ +.+++++.+.....+++.. +..+. ..+.++.+.+..+..++.++++|.+|...+..++..........+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (379)
T TIGR00881 162 IVSLICFLLLRDSPQSCGLPPAEEMPN-EEPDG-DAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWS 239 (379)
T ss_pred HHHHHHheeeCCCccccccCccccCcc-ccccc-ccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6544433 4444332221111111000 00000 0000000111122235678899999999888888888888899999
Q ss_pred HHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhcc-CCCChHH
Q 010350 360 PTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID-LGLPHWE 438 (512)
Q Consensus 360 p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 438 (512)
|.|+++.+|++..+.+.+.+...++.++++++.+++.||..+++ +.............++...... ..+....
T Consensus 240 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (379)
T TIGR00881 240 PLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGR------RGPLAVFFMALIIVSLLVYWLNPAANPLMD 313 (379)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCc------chHHHHHHHHHHHHHHHHHhcCcchhHHHH
Confidence 99999888999999999999999999999999999999875432 1111111111112222222211 1122222
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEE
Q 010350 439 IVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSY 505 (512)
Q Consensus 439 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f 505 (512)
.+..++.+...............+..|+++|+++.|+.+++..+|+.++|.+.|.+.|..| |+..|
T Consensus 314 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f 379 (379)
T TIGR00881 314 LICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG-WAGAF 379 (379)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc-ccccC
Confidence 3333444443333333344456677899999999999999999999999999999999987 76543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=276.84 Aligned_cols=363 Identities=17% Similarity=0.164 Sum_probs=276.3
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHH
Q 010350 111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS 190 (512)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 190 (512)
+|++.++..++.+++........+..+|.+.+++|+|..+.+++.+.+.+++.++++++|++.||+|||+++..+.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~ 83 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI 83 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35677878888888888888899999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcc-ccCch
Q 010350 191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-NLGWE 269 (512)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~gw~ 269 (512)
++.++.. .+++++.+++.|++.|++.+...+...+++.+++|+++|+++++..+....+|..++|.+.+.+.. ..|||
T Consensus 84 i~~~l~~-~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~ 162 (394)
T PRK03699 84 LAVAGLM-FSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWY 162 (394)
T ss_pred HHHHHHH-HcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 8887765 557778899999999999998888899999999998999999999999999999999999888764 57999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhH
Q 010350 270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS 349 (512)
Q Consensus 270 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (512)
+.|++.+++.++..+..++...+++++.+ ++++ ++. . + ...++.++...+..++..
T Consensus 163 ~~f~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~---------------~~~-~----~-~~~~~~~~~~~~~~~~~~ 218 (394)
T PRK03699 163 WVYACIGLVYVAIFILTLFSEFPALGKHA---PKAD---------------KPV-A----K-EKWGIGVLFLAIAALLYI 218 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccC---cccc---------------Ccc-c----c-ccCChHHHHHHHHHHHHH
Confidence 99999888776655444332222111100 0000 000 0 0 112466777777777777
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhh
Q 010350 350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS 429 (512)
Q Consensus 350 ~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (512)
...+.+..|+|.|+++.+|+++.+++.+.+...++.++++++.+++.||+++| +.. .....+..+.+.+..
T Consensus 219 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~--------~~l-~~~~~~~~~~~~~~~ 289 (394)
T PRK03699 219 LAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQ--------RIL-TVLAGLALVLMYLFV 289 (394)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchh--------hHH-HHHHHHHHHHHHHHH
Confidence 78888999999999888899999999999999999999999999999999764 222 222222222222222
Q ss_pred ccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEEecC
Q 010350 430 IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCPP 509 (512)
Q Consensus 430 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~~~~ 509 (512)
. ..+..+..+..++.|++.+...+.......+. .+++++...|......++|++++|.+.|++.|..| ++..+++.+
T Consensus 290 ~-~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~ 366 (394)
T PRK03699 290 N-TDDPSHLLYAILGLGFFSSAIYTTIITLGSQQ-TKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTAN 366 (394)
T ss_pred H-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhH
Confidence 2 23334444455566665555555544444443 34556788899999999999999999999999987 777766554
Q ss_pred c
Q 010350 510 R 510 (512)
Q Consensus 510 ~ 510 (512)
+
T Consensus 367 ~ 367 (394)
T PRK03699 367 G 367 (394)
T ss_pred H
Confidence 3
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=274.03 Aligned_cols=357 Identities=15% Similarity=0.087 Sum_probs=277.9
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHH
Q 010350 119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL 198 (512)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 198 (512)
+.+..++..++.....+.+|.+.++++.+..+.+++.+++.++..++++++|+++||+|||++++.+.++..++..+.+.
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 83 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF 83 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence 44556677788888888999999999999999999999999999999999999999999999999998888777766654
Q ss_pred hh----hhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHH
Q 010350 199 LA----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI 274 (512)
Q Consensus 199 ~~----~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~ 274 (512)
.. .+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|.+++|.+++.+.+..|||+.|++
T Consensus 84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~ 163 (365)
T TIGR00900 84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV 163 (365)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33 16789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHH
Q 010350 275 FGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYT 354 (512)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (512)
.++..++..+..+.++.+++.+.++.+.+++. .++. ...++.++|+|.++...+..++.......
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (365)
T TIGR00900 164 DAVGFAISALLIVSVRIPELAASEIQALSNAV----------LRDT-----REGIKFVLKNPLLRTLLLLALLFNLVFAP 228 (365)
T ss_pred HHHHHHHHHHHHHhcccccCCCccccccchhH----------HHHH-----HhHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 88766655544444433222111111000000 0000 11346778899998888877777777766
Q ss_pred HH-HHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCC
Q 010350 355 CL-SWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLG 433 (512)
Q Consensus 355 ~~-~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (512)
.. .+.|.|.++.+|.+..+.+.+.....++.+++.++.+++.||.+++ .....+....+++.........
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 299 (365)
T TIGR00900 229 AIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM---------ALMTGAIFVIGLAILVVGLTPP 299 (365)
T ss_pred HHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh---------HHHHHHHHHHHHHHHHHHhhch
Confidence 66 8899999877899999999999999999999999999999998753 2223333333333333332221
Q ss_pred CChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccC
Q 010350 434 LPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTH 499 (512)
Q Consensus 434 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g 499 (512)
+.....+..++.+++.+...+.......+.+|+++|+++.|+.++..+++..++|.+.|.+.|..|
T Consensus 300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 300 NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 223334556677777777777777777888999999999999999999999999999999999765
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=278.59 Aligned_cols=363 Identities=20% Similarity=0.249 Sum_probs=276.1
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHH
Q 010350 111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS 190 (512)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 190 (512)
++|..+....+..+..+++....+...|.+.+++|.|..+.+++.+.+.++..++++++|+++||+|||+++..+.++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFG 91 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 35667777777888889999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchH
Q 010350 191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES 270 (512)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~ 270 (512)
++.++.. ..++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+||+
T Consensus 92 ~~~~~~~-~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 170 (406)
T PRK11551 92 LFSLATA-QAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRH 170 (406)
T ss_pred HHHHHHH-HhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHH
Confidence 8776664 567778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhh---cHhHHHHHHHHH
Q 010350 271 VFYIFGLLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFR---SKAVWAMIYAHF 346 (512)
Q Consensus 271 ~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 346 (512)
.|++.+++.++..+ ...++||+++....+..++++ +..++..++ ++..+...+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~ 230 (406)
T PRK11551 171 IFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR--------------------APVLRALFGEGRATATLLLWISYF 230 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh--------------------hhhHHHHhhhhhhhHHHHHHHHHH
Confidence 99998876555443 334456543321111000000 000011111 223344444455
Q ss_pred HhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHH
Q 010350 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT 426 (512)
Q Consensus 347 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (512)
+.....+....|+|.|+++ .|++..+.+.+.+...++.++++++.|++.||++++ +. .....+...+++.
T Consensus 231 ~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~--------~~-~~~~~~~~~~~~~ 300 (406)
T PRK11551 231 FTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPR--------RV-VLLIYAGILASLA 300 (406)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH--------HH-HHHHHHHHHHHHH
Confidence 5556667788899999976 699999999999999999999999999999999864 22 2222222233322
Q ss_pred HhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEE
Q 010350 427 LSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSY 505 (512)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f 505 (512)
..... .+.....+..++.+++.+...+.......+.+|+++|+++.|+.+++.++|.+++|.++|.+.+..+++...+
T Consensus 301 ~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~ 378 (406)
T PRK11551 301 ALAAA-PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVI 378 (406)
T ss_pred HHHhc-CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHH
Confidence 22222 2223333444555555555555566667788899999999999999999999999999999999876565443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=280.14 Aligned_cols=356 Identities=14% Similarity=0.157 Sum_probs=267.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHH
Q 010350 113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 192 (512)
|.....+++..+.... ...+++.+|.+++++|+|..+.+++.+++.+++.+++++.|+++||+|||+++..+.++++++
T Consensus 9 ~~~~~~~~~~~~~~~~-~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~ 87 (393)
T PRK09705 9 FMLLVLVLIGLNMRPL-LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVG 87 (393)
T ss_pred HHHHHHHHHHHHcchh-hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHH
Confidence 3444444444433322 266788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcccc-CchHH
Q 010350 193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESV 271 (512)
Q Consensus 193 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-gw~~~ 271 (512)
.++.+ ++++++.+++.|+++|++.+...+....++.+++| ++|+++++++..+..+|..+++.+++++.++. +||+.
T Consensus 88 ~~~~~-~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~ 165 (393)
T PRK09705 88 ALMRE-LYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQT 165 (393)
T ss_pred HHHHH-HCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 98875 56777899999999999999999999999999997 88999999999999999999999999998875 89998
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHH
Q 010350 272 FYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG 351 (512)
Q Consensus 272 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (512)
+.+.++..++..+..+...+++++++.+ ++ ...++.++++..|...+..++....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------------------~~~~~~l~~~~~~~l~~~~~~~~~~ 220 (393)
T PRK09705 166 LAWWALPAVVALFAWWWQSAREVASSHK--TT-----------------------TTPVRVVFTPRAWTLGVYFGLINGG 220 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccC--CC-----------------------cCCcccccCHhHHHHHHHHHHHHHH
Confidence 8776665544433333332222111000 00 0013455778888877777777788
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhcc
Q 010350 352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID 431 (512)
Q Consensus 352 ~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (512)
++...+|+|.|+++ +|.+..+++.+.++..++.++++++.+++.||++++ +. ...+..+..+........
T Consensus 221 ~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~--------~~-~~~~~~l~~~~~~~~~~~ 290 (393)
T PRK09705 221 YASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRR--------KL-LMLALVLQLVGFCGFIWL 290 (393)
T ss_pred HHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccch--------HH-HHHHHHHHHHHHHHHHHc
Confidence 88899999999987 799999999999999999999999999999998754 22 222323322322222211
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcC-cchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEEec
Q 010350 432 LGLPHWEIVGILTAGLALSSFALSGLYCTHQDIS-PEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCP 508 (512)
Q Consensus 432 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~~~ 508 (512)
..+.... ..++.+++.+...+.......+..+ +++++++.|+.+.+.++++.++|.+.|++.|..|+|...|++.
T Consensus 291 ~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~ 366 (393)
T PRK09705 291 PLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFH 366 (393)
T ss_pred cchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 2222221 2234455555555554444445554 5789999999999999999999999999999999887766554
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=283.68 Aligned_cols=386 Identities=16% Similarity=0.214 Sum_probs=266.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHH
Q 010350 113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 192 (512)
|.++..+++.+...++++..++...|.+.++ |+|..+.++..+.+.+++.++++++|+++||+|||++++++.++.+++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~ 106 (452)
T PRK11273 28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV 106 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHH
Confidence 4445555566666667777788888998888 999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHhh---hhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHH-HHhhhhHHhccccCc
Q 010350 193 TALLPLLA---GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSV-AGLLLAPPIIENLGW 268 (512)
Q Consensus 193 ~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~gw 268 (512)
.++.+... .+++.+++.|++.|++.+...+.....+.+++|+++|++++++++.+..+|.. .+|+++..+....||
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw 186 (452)
T PRK11273 107 MLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDW 186 (452)
T ss_pred HHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccH
Confidence 87665432 35678899999999999998888888999999999999999999999998874 455554444344599
Q ss_pred hHHHHHHHHHHHHHH-HHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHH
Q 010350 269 ESVFYIFGLLGIAWF-SGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFC 347 (512)
Q Consensus 269 ~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (512)
|+.|++.+++.++.. +..++++++++....+..++.+. ..+......++.+.+.++...+.++|++.+|...+..++
T Consensus 187 ~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 264 (452)
T PRK11273 187 HAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKN--DYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVF 264 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhh--ccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHH
Confidence 999999888766643 44455555443221111100000 000000000000000011112347789999999888888
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHH
Q 010350 348 GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTL 427 (512)
Q Consensus 348 ~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (512)
.....+....|+|.|+++..|++..+++.+..+..++.+++.++.|+++||+++++ +.........+..+....
T Consensus 265 ~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r------~~~~~~~~~~l~~~~~~~ 338 (452)
T PRK11273 265 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN------RGATGVFFMTLVTIATIV 338 (452)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC------cchHHHHHHHHHHHHHHH
Confidence 88888889999999999888999999998888889999999999999999996432 111111111111111111
Q ss_pred hhccC-CCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhh-HHhhhhhcccccCcceEEE
Q 010350 428 SSIDL-GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIV-GVALTGYLLDSTHSWSVSY 505 (512)
Q Consensus 428 ~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i-~p~i~G~l~~~~g~~~~~f 505 (512)
..... .+....++..+..+...............+..|++.+|+++|+.+...++|+.+ +|.+.|++.|..| |+..|
T Consensus 339 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f 417 (452)
T PRK11273 339 YWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGF 417 (452)
T ss_pred HHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHH
Confidence 11211 122222233333333222222222233456789999999999999999998765 7999999999988 87776
Q ss_pred Eec
Q 010350 506 QCP 508 (512)
Q Consensus 506 ~~~ 508 (512)
.+.
T Consensus 418 ~~~ 420 (452)
T PRK11273 418 MVM 420 (452)
T ss_pred HHH
Confidence 543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=272.46 Aligned_cols=338 Identities=16% Similarity=0.051 Sum_probs=247.2
Q ss_pred HHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHH
Q 010350 126 CNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPG 205 (512)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (512)
+......+++.+|.+.+|+|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..+......+ .+.....+++..
T Consensus 3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~-~~~~~~~~~~~~ 81 (368)
T TIGR00903 3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAA-AGRLLDPFNYEW 81 (368)
T ss_pred hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH-HHHHHHhccHHH
Confidence 4566778899999999999999999999999999999999999999999999998876655444333 333233367899
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHH-
Q 010350 206 LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFS- 284 (512)
Q Consensus 206 ~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~- 284 (512)
++++|+++|++.+. .......++|++|+++|++++++...+..+|.++++++++++.+++|||+.|++.++++++..+
T Consensus 82 l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~ 160 (368)
T TIGR00903 82 LLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIIL 160 (368)
T ss_pred HHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 99999999999985 4566677799999999999999999999999999999999999999999999998888766544
Q ss_pred HHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010350 285 GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFS 364 (512)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 364 (512)
..+++||+++.+++. .+. + +. ..+++++++||.+|...+..++.....+.+.+|+|+|++
T Consensus 161 ~~~~lp~~p~~~~~~---~~~-----~------~~------~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~ 220 (368)
T TIGR00903 161 VLAALPALPFQAAEG---FGF-----K------DA------VKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALR 220 (368)
T ss_pred HHHHcCCCCCCCCCC---cch-----H------HH------HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566644322110 000 0 00 013578999999999999999999999999999999997
Q ss_pred HhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCChHHHHHHHH
Q 010350 365 EELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILT 444 (512)
Q Consensus 365 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (512)
+ .|++.. .+....+..+.+.++ .+++.||..+++. |+.......+..++.+...... .+....+....+
T Consensus 221 ~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~-----r~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l 289 (368)
T TIGR00903 221 P-AGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGL-----RSIYIRAAALLIAAFFLALAFE-LNRLALFAFIGI 289 (368)
T ss_pred H-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhh-----HHHHHHHHHHHHHHHHHHHHHc-cccHHHHHHHHH
Confidence 6 588865 666666666666655 4678888765421 1121211222222222222221 122233333333
Q ss_pred HHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhccc
Q 010350 445 AGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLD 496 (512)
Q Consensus 445 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~ 496 (512)
.+++.....+.......+.+|++.||++.|+.+..+++|+.++|.+.|.+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~ 341 (368)
T TIGR00903 290 AGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS 341 (368)
T ss_pred HHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc
Confidence 4443433444444566788999999999999999999999999999988774
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=278.52 Aligned_cols=352 Identities=17% Similarity=0.178 Sum_probs=267.2
Q ss_pred HHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHH
Q 010350 126 CNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPG 205 (512)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (512)
.......+++..|.+.+++|+|..+.+++.+++.+++.++++++|+++||+|||+++.++.++.+++.++.+ .+++++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~-~~~~~~~ 93 (377)
T TIGR00890 15 TSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYA-IADSLAA 93 (377)
T ss_pred HhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHH-HHHHHHH
Confidence 333466788899999999999999999999999999999999999999999999999999999988887764 5677899
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHH
Q 010350 206 LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSG 285 (512)
Q Consensus 206 ~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 285 (512)
++++|++.|++.+..++.....+.+++| ++|++++++...+..+|..+++++.+.+.+..|||+.|++.+++.++..+.
T Consensus 94 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 172 (377)
T TIGR00890 94 LYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVL 172 (377)
T ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888888888889887 689999999999999999888777777778889999999999887776555
Q ss_pred HHh-hccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010350 286 FKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFS 364 (512)
Q Consensus 286 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 364 (512)
.++ ++++++++.++..+. ..++...++.++++.++...+..++..........+.+.|.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (377)
T TIGR00890 173 GAFLIGYPPGQLIKTNIEV-------------------SVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQ 233 (377)
T ss_pred HHHheecCchhccccCccc-------------------chhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 444 333322111100000 000112357788898888877777766666666777787875
Q ss_pred HhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCCh-HHHHHHH
Q 010350 365 EELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPH-WEIVGIL 443 (512)
Q Consensus 365 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 443 (512)
+ +|.+..+.+.+.+...++.++++++.+++.||+++|+ . ...+.+..+++............ ......+
T Consensus 234 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (377)
T TIGR00890 234 S-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK--------T-MSIVFGISAVGMAAMLFIPMLNDVLFLATVA 303 (377)
T ss_pred H-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------h-hhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 4 6899888999999999999999999999999998642 2 22333333333333222221122 2223334
Q ss_pred HHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEEecC
Q 010350 444 TAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCPP 509 (512)
Q Consensus 444 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~~~~ 509 (512)
+.+++.+...........+.+|+++++++.|+.+...++|..++|.+.|.+.|..| |+..|.+.+
T Consensus 304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~ 368 (377)
T TIGR00890 304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTG 368 (377)
T ss_pred HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHH
Confidence 45555554444445566777899999999999999999999999999999999887 877766544
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=272.59 Aligned_cols=354 Identities=16% Similarity=0.160 Sum_probs=264.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT 193 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 193 (512)
+.+..+.+..+..........+.+|.+.+++|.|..+.++..+++.++..++++++|+++||+|||++++.+.++.+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~ 99 (394)
T PRK10213 20 SAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSC 99 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHH
Confidence 33334444444444444455667889999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHH
Q 010350 194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY 273 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~ 273 (512)
++.. .+++++.++++|++.|++.+...+...+++.|++|+++|++++++.....++|.+++|++++++.+.+|||+.|+
T Consensus 100 ~~~~-~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~ 178 (394)
T PRK10213 100 LLVS-FANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFN 178 (394)
T ss_pred HHHH-HHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 7764 567789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHH
Q 010350 274 IFGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH 352 (512)
Q Consensus 274 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (512)
+.+++++++.+... ..|++++++ ++. ...+++.+|+|.++...+..++.....
T Consensus 179 ~~~~l~~~~~l~~~~~~p~~~~~~----~~~----------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~ 232 (394)
T PRK10213 179 AAAVMGVLCIFWIIKSLPSLPGEP----SHQ----------------------KQNTFRLLQRPGVMAGMIAIFMSFAGQ 232 (394)
T ss_pred HHHHHHHHHHHHHHHHCCCCCccc----ccc----------------------hhHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 98877665543332 234322100 000 012356788999988777666666666
Q ss_pred HHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccC
Q 010350 353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDL 432 (512)
Q Consensus 353 ~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (512)
+....++++++.+.+|+++.+.+.+....+++.+++..+.+++.||.++ +.......+..+..+.+... .
T Consensus 233 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~---------~~l~~~~~~~~~~~~~l~~~-~ 302 (394)
T PRK10213 233 FAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK---------LALAGAPLVLAVSALVLTLW-G 302 (394)
T ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch---------hHHHHHHHHHHHHHHHHHHH-h
Confidence 6667776444445679999999999999999999999999999998432 22222222222222222222 2
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEE
Q 010350 433 GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQ 506 (512)
Q Consensus 433 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~ 506 (512)
.+........++.|++.+...+.......+..+ ++.+.+.+......++|..+||.++|++.|..| +...+.
T Consensus 303 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g-~~~~~~ 374 (394)
T PRK10213 303 SDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG-LTSPLM 374 (394)
T ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhhHHH
Confidence 223334445566677776666666666666665 567788888888889999999999999999887 544443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=282.89 Aligned_cols=372 Identities=20% Similarity=0.234 Sum_probs=288.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT 193 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 193 (512)
+.+..+++..++..++....++.+|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|||++++++.++++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 81 (485)
T TIGR00711 2 LLTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS 81 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 34567777888888999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHH
Q 010350 194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY 273 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~ 273 (512)
++++ .+++++.+++.|+++|++.+...+...+++.|++|+++|+++++++.....+|..++|.+++++.++.||||.|+
T Consensus 82 ~~~~-~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~ 160 (485)
T TIGR00711 82 LLCG-VAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFL 160 (485)
T ss_pred HHHh-CcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhh
Confidence 7764 667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hhccCCCCCCCCCCcchhhh-------------hh--hhhhhhh------------------HHh
Q 010350 274 IFGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYI-------------NM--KKSLSAS------------------LEE 319 (512)
Q Consensus 274 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~------------------~~~ 319 (512)
+.+.+.++..+... .++++++.+.++. +..... .. +..+.++ .++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (485)
T TIGR00711 161 INVPIGIIVVVVAFFILPRDKPAASENF-DFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWE 239 (485)
T ss_pred hhhHHHHHHHHHHHHHcCCccccccCCC-cHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 98887765544433 4444332221111 100000 00 0000000 011
Q ss_pred hcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHH
Q 010350 320 MGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL 399 (512)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~ 399 (512)
.+++ ++..-.+++++|.++...+..++.....+....++|.|+++.+|+++.+++++..+..++.+++.++.|++.||+
T Consensus 240 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~ 318 (485)
T TIGR00711 240 LTDD-NPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI 318 (485)
T ss_pred HcCC-CCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1111 111124678899999888888888888889999999999998999999999999999999999999999999998
Q ss_pred HHcCCCccchhHHHHHHHhHHHHHHHHHhh--ccCCCCh-HHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHH
Q 010350 400 IATGVETTMVRKICQTIAFLSPAVCMTLSS--IDLGLPH-WEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGIT 476 (512)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 476 (512)
++| .....+....++...+.. .....+. ......++.|++.+...........+..|+++++++.|+.
T Consensus 319 ~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 389 (485)
T TIGR00711 319 DPR---------KLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLS 389 (485)
T ss_pred CcH---------HHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHH
Confidence 753 223334443343333332 2222233 3344456677777766666666666778999999999999
Q ss_pred HhhhchhhhhHHhhhhhcccc
Q 010350 477 NTVGAVPGIVGVALTGYLLDS 497 (512)
Q Consensus 477 ~~~~~lg~~i~p~i~G~l~~~ 497 (512)
++.+.+|+.+|+.+.|.+.+.
T Consensus 390 ~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 390 NFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999874
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=282.00 Aligned_cols=390 Identities=15% Similarity=0.159 Sum_probs=280.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 191 (512)
+|.++..+.+.....+.....++.+.|.+.+++|.|..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.++
T Consensus 17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 96 (455)
T TIGR00892 17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASL 96 (455)
T ss_pred chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHH
Confidence 45566666665555555666788889999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHhhhhHHHHHH-HHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchH
Q 010350 192 ATALLPLLAGFMPGLVL-SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES 270 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~-~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~ 270 (512)
+.++++ .+++++.+++ .|++.|++.+...+...+++.++++ ++|++++++...+..+|..++|.+++.+.+.+|||+
T Consensus 97 ~~~~~~-~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~ 174 (455)
T TIGR00892 97 GMILAS-FSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRG 174 (455)
T ss_pred HHHHHH-HhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHH
Confidence 887765 4566666654 5789999998877777888889986 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCC-CCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhH
Q 010350 271 VFYIFGLLGIAWFSGFKILQEGETSNGA-TLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS 349 (512)
Q Consensus 271 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (512)
.|++.+++.++..+..+++.+.++.+.. +.++++.............+...++..+....+++++|.++...+..++..
T Consensus 175 ~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (455)
T TIGR00892 175 SFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMF 254 (455)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHH
Confidence 9999998876655444444332211100 000000000000000000000000111111125788999998888888877
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhh
Q 010350 350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS 429 (512)
Q Consensus 350 ~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (512)
.+.+....++|.|+++ .|++..+++.+.++.+++.++++++.+++.||...++ .++.....+.+..+++.++..
T Consensus 255 ~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~-----~~~~~~~~~~~~~~l~~ll~~ 328 (455)
T TIGR00892 255 LGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRP-----HVQYLFSFALLFNGLTHLLCA 328 (455)
T ss_pred HHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 7878888899999976 6999999999999999999999999999999732110 022222222222222222222
Q ss_pred ccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEEecC
Q 010350 430 IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCPP 509 (512)
Q Consensus 430 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~~~~ 509 (512)
. ..+....++..++.|++.+...+.......+.++++++++++|++++..++|.+++|.++|.+.|..|+|+..|++.+
T Consensus 329 ~-~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~ 407 (455)
T TIGR00892 329 L-AGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASG 407 (455)
T ss_pred H-hchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhh
Confidence 2 223333445566667777666666667777778999999999999999999999999999999998877888877665
Q ss_pred c
Q 010350 510 R 510 (512)
Q Consensus 510 ~ 510 (512)
+
T Consensus 408 ~ 408 (455)
T TIGR00892 408 S 408 (455)
T ss_pred H
Confidence 4
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=278.91 Aligned_cols=376 Identities=14% Similarity=0.073 Sum_probs=261.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHH
Q 010350 113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 192 (512)
++.+....+..+...++...+.+..|.+.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++++++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~ 114 (476)
T PLN00028 35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPA 114 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 34555555566666677778888899999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcc--------
Q 010350 193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-------- 264 (512)
Q Consensus 193 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------- 264 (512)
.++.+ .+++++.++++|++.|++.+... ....++++++|+++|++++|+......+|..+++.+.+.+..
T Consensus 115 ~~~~~-~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~ 192 (476)
T PLN00028 115 VFCMS-LVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAP 192 (476)
T ss_pred HHHHH-HhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 87665 45667888899999999987654 456678999999999999999988777777777666654422
Q ss_pred -ccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHH
Q 010350 265 -NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIY 343 (512)
Q Consensus 265 -~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (512)
..|||+.|++.+++.+++.+..+++++++++...+ +.+ ++. +.++......+++.++++++|.+.+
T Consensus 193 ~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~--~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (476)
T PLN00028 193 SFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYR--ELK----KSG-------TMPKDSFSKVLRYGVTNYRTWILAL 259 (476)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchh--hHH----hcC-------ccccccHHHHHHHHHcCchhHHHHH
Confidence 25899999999998877766666665543321100 000 000 0000000123456778899888877
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHH
Q 010350 344 AHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAV 423 (512)
Q Consensus 344 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (512)
..++.....+.+..++|.|+.+.+|++..+++.+.++..++.++++++.|+++||+++|.... .|+....+..++.++
T Consensus 260 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~--~r~~~~~~~~~l~~i 337 (476)
T PLN00028 260 TYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMR--GRLWALWIVQTLGGV 337 (476)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcc--hhHHHHHHHHHHHHH
Confidence 776666666778889999998888999999999999999999999999999999998763221 133333333333333
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceE
Q 010350 424 CMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSV 503 (512)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~ 503 (512)
++.+.... .+....++.+++.+++.+......... ...+.++++|++.|+.+..+++|++++|.+.+ .+..++|+.
T Consensus 338 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~y~~ 413 (476)
T PLN00028 338 FCIWLGRA-NSLGAAIVVMILFSIFVQAACGATFGI-VPFVSRRSLGVISGLTGAGGNVGAVLTQLLFF--TGSSYSTET 413 (476)
T ss_pred HHHHhccc-chHHHHHHHHHHHHHHHHHhhhhhccc-CcccChhhchhhhhhhhccccHHHHHHHHHHH--hcCCccHhh
Confidence 22222221 122222333334444333222222222 22356789999999998888787777777655 222345777
Q ss_pred EEEecC
Q 010350 504 SYQCPP 509 (512)
Q Consensus 504 ~f~~~~ 509 (512)
.|++.+
T Consensus 414 ~f~~~~ 419 (476)
T PLN00028 414 GISLMG 419 (476)
T ss_pred HHHHHH
Confidence 776654
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=273.72 Aligned_cols=347 Identities=27% Similarity=0.429 Sum_probs=268.1
Q ss_pred HHHHHHHHHhhhhhhhhhh-hhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHH
Q 010350 120 SLAFVICNMDKVNLSVAII-PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL 198 (512)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 198 (512)
++..++..++...+.+.+| .+.+++|.|..+++++.+++.++..++++++|+++||+|||+++.++.++.+++..+..
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~- 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA- 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh-
Confidence 4566777888888999999 89999999999999999999999999999999999999999999999999988855554
Q ss_pred hhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHH
Q 010350 199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL 278 (512)
Q Consensus 199 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~ 278 (512)
++++.+.+++.|++.|++.+...+...+++.|++|+++|++++++......+|.+++|.+++.+.++.+||+.|++.+++
T Consensus 81 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~ 160 (352)
T PF07690_consen 81 FASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAIL 160 (352)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHH
T ss_pred hhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccch
Confidence 43555699999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHH-HhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHH
Q 010350 279 GIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLS 357 (512)
Q Consensus 279 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (512)
.++..++. .+++++++++..+.+.+++. +.++.. ...++.+.++|.+|...+..++..+.......
T Consensus 161 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (352)
T PF07690_consen 161 SLIAAILFILFLPEPPPPRERESPKESES------------KKPKPL-KPGFKSLFKNPVLWILLIAFFLFFFVFSGFSF 227 (352)
T ss_dssp HHHHHHHHHCCC---STTTT--SSTTTT--------------HHHCC-CH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHhhhhhhccccccccccccccc------------cccccc-ccccccccccchhhhhhhhhhHHHHHHHHhhc
Confidence 88776542 34444333332222211100 000000 00246777888887666666666677888999
Q ss_pred HHHHHHHHhcCCC-hhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhcc-CCCC
Q 010350 358 WLPTYFSEELSLN-LTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID-LGLP 435 (512)
Q Consensus 358 ~~p~~l~~~~g~s-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 435 (512)
++|.|+++.+|.+ ..+.+.+.....+.+.+++++.+++.||++++ +....... ........+.... ..+.
T Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~ 299 (352)
T PF07690_consen 228 FLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR-------RRLLIAIL-LLILGALGLLLLPFSSSP 299 (352)
T ss_dssp HHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHH-HHHHHHHHHCCSHHHCHH
T ss_pred ccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-------HHHHHHHH-HHHHHHHHHHHHHHhhhH
Confidence 9999987888999 88999999999999999999999999997653 22222222 2222222222221 2234
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHH
Q 010350 436 HWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGV 488 (512)
Q Consensus 436 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p 488 (512)
.+.++..++.|++.+...+.......+..|++++|++.|+.++..++|+.++|
T Consensus 300 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 300 VWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 55566677788888877888888888889999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=273.95 Aligned_cols=365 Identities=17% Similarity=0.177 Sum_probs=263.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 191 (512)
+++.+..+.+.++...++.....+..|.+.+++|+|..+.+++.+++.+++.++++++|+++||+|||+++.++.++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~ 95 (426)
T PRK12307 16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSV 95 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 44566777788888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHH
Q 010350 192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV 271 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~ 271 (512)
+.++.+ .+++++.++++|++.|++.+..++....++.|++|+++|++++++...+..+|.++++.+.+.+.+..+||+.
T Consensus 96 ~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~ 174 (426)
T PRK12307 96 GTGLSG-LASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAA 174 (426)
T ss_pred HHHHHH-HHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHH
Confidence 887765 5667799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHH---Hh
Q 010350 272 FYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF---CG 348 (512)
Q Consensus 272 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 348 (512)
|++.++..++........|++++....+..++ . +.++.........++++++++.++....... +.
T Consensus 175 f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (426)
T PRK12307 175 FFVGLLPVLLVIYIRARAPESKEWEEAKLSGK-------G----KHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSI 243 (426)
T ss_pred HHHHHHHHHHHHHHHHHCCCChHHHHhhhhcc-------c----cccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 98854433322222212222211100000000 0 0000000001124567888887765443222 22
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHh
Q 010350 349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLS 428 (512)
Q Consensus 349 ~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (512)
....+.+..++|.|+++ .|+++.+.+.+.+...++.++++++.+++.||+++| .....+.+...+.....
T Consensus 244 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~---------~~~~~~~~~~~~~~~~~ 313 (426)
T PRK12307 244 FGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLK---------KTFSIGLLMSFLFIFPL 313 (426)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH---------HHHHHHHHHHHHHHHHH
Confidence 33334567889999976 599999999999999999999999999999999754 22223332222222222
Q ss_pred hccCCCChHHHHHHHHHHHHHH--HhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccC
Q 010350 429 SIDLGLPHWEIVGILTAGLALS--SFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTH 499 (512)
Q Consensus 429 ~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g 499 (512)
......... .....+.+.+.. ...........+.+|++++|+++|+.+.+.++|+.++|.+.|++.+..|
T Consensus 314 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g 385 (426)
T PRK12307 314 FRIPQDNYL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG 385 (426)
T ss_pred HHHccccHH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc
Confidence 211122222 222222232221 1222233445677899999999999999999999999999999999887
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=279.57 Aligned_cols=368 Identities=18% Similarity=0.155 Sum_probs=255.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchh-hHH-----HHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSV-AGL-----VQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVL 187 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~~~-----~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 187 (512)
+.+....+..++.++|...++...|.+.++++.+..+ ..+ ..++.++++.++++++|+++||+|||+++.++.+
T Consensus 16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~ 95 (490)
T PRK10642 16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIV 95 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 5666777888899999999999999999998644322 122 2477889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHH--------HHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhh
Q 010350 188 IWSLATALLPLLAGFMP--------GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259 (512)
Q Consensus 188 ~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 259 (512)
+++++.++++ +++++. .++++|+++|++.|..++...++++|++|+++|++..++...+..+|..+++.+.
T Consensus 96 l~~i~~~~~a-~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 96 IMSISTFCIG-LIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred HHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998876 455544 3889999999999999999999999999999999999999988888888887665
Q ss_pred HHhc--------cccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHH
Q 010350 260 PPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKA 331 (512)
Q Consensus 260 ~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (512)
..+. .++|||+.|++.+++.++.+++...+||+++..... +..++. ..+. ..+.++.++++
T Consensus 175 ~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~-----~~~~~~-----~~~~-~~~~~~~~~~~ 243 (490)
T PRK10642 175 VLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHV-----DKLEQG-----DREG-LQDGPKVSFKE 243 (490)
T ss_pred HHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHH-----Hhhhhh-----cccc-ccccccCCHHH
Confidence 5432 267999999997766555444444555543211000 000000 0000 00112334566
Q ss_pred Hhhc-HhHHH-HHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccch
Q 010350 332 IFRS-KAVWA-MIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMV 409 (512)
Q Consensus 332 ~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~ 409 (512)
++++ ++.+. .....++....++.+..|+|.|+++.+|++..+.++......++.+++.++.|+++||+++|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr------- 316 (490)
T PRK10642 244 IATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR------- 316 (490)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-------
Confidence 6653 23222 22333455677888899999999887899988888887888888999999999999999864
Q ss_pred hHHHHHHHhH-HHHHHHH-HhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhH
Q 010350 410 RKICQTIAFL-SPAVCMT-LSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVG 487 (512)
Q Consensus 410 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~ 487 (512)
+ ....+.+ ....++. +......+....+++.++.+++.+...........+.+|++.|+++.|+.+.+..+++.++
T Consensus 317 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~ 394 (490)
T PRK10642 317 -P-FVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLT 394 (490)
T ss_pred -H-HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHH
Confidence 2 2222222 1111111 1111122223333444445554443333344445567899999999998776777888999
Q ss_pred HhhhhhcccccCcce
Q 010350 488 VALTGYLLDSTHSWS 502 (512)
Q Consensus 488 p~i~G~l~~~~g~~~ 502 (512)
|.+.|++.+..+++.
T Consensus 395 p~i~g~l~~~~~~~~ 409 (490)
T PRK10642 395 PTLAAWLVESTQNLM 409 (490)
T ss_pred HHHHHHHHHHhCCch
Confidence 999999998766544
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=270.70 Aligned_cols=359 Identities=13% Similarity=0.091 Sum_probs=257.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhc-ccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHH
Q 010350 113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 191 (512)
++.+.+..++++..+.....+++..+.+.+ ++|+|.+|.+++.+++.+++.+++++.|++.||+|.|+++.++.+++++
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i 112 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII 112 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 467777888888888999999999888766 8999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHh----hhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhc----
Q 010350 192 ATALLPLL----AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII---- 263 (512)
Q Consensus 192 ~~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~---- 263 (512)
..++.++. .++++.+++.|++.|++ +..++.....+++++|+++||+++|+.....++|..++++++..+.
T Consensus 113 ~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l 191 (462)
T PRK15034 113 PCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPV 191 (462)
T ss_pred HHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 88777543 16789999999999998 6788999999999999999999999997777777766655554322
Q ss_pred -c-------------ccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccH
Q 010350 264 -E-------------NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPW 329 (512)
Q Consensus 264 -~-------------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (512)
+ ..+||..+++..++.++..+..++..++++..+. . ...+
T Consensus 192 ~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~---~-----------------------~~~~ 245 (462)
T PRK15034 192 FAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRA---S-----------------------IADQ 245 (462)
T ss_pred HHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc---C-----------------------HHHH
Confidence 2 3347888878777776665555554333221100 0 0112
Q ss_pred HHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccch
Q 010350 330 KAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMV 409 (512)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~ 409 (512)
...+|+|..|.+.+..++....+.++..++|.|+++.+ +.........+..+...+.++++|+++||+|++
T Consensus 246 ~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~------- 316 (462)
T PRK15034 246 LPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGV------- 316 (462)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCch-------
Confidence 67899999999999999998888889999999998754 333333334445678888999999999999864
Q ss_pred hHHHHHHHhHHHHHHH-H-HhhccCC--CChHH-HHHHHHHHHHHHHhhhhhhhhHhhhcCc------------------
Q 010350 410 RKICQTIAFLSPAVCM-T-LSSIDLG--LPHWE-IVGILTAGLALSSFALSGLYCTHQDISP------------------ 466 (512)
Q Consensus 410 ~~~~~~~~~~~~~~~~-~-~~~~~~~--~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~------------------ 466 (512)
+... +.++...++. . ....... .+.+. .+.++.+.++.+...-.....+.+.+++
T Consensus 317 -~vl~-~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~ 394 (462)
T PRK15034 317 -RVTL-INFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQR 394 (462)
T ss_pred -HHHH-HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhh
Confidence 2222 2222222221 1 1111111 11222 2222222233332222333333333332
Q ss_pred ---chhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEEecC
Q 010350 467 ---EYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCPP 509 (512)
Q Consensus 467 ---~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~~~~ 509 (512)
++.|.+.|+....+.+|+++.|.+.|...+..|+|...|++..
T Consensus 395 ~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~ 440 (462)
T PRK15034 395 EAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFL 440 (462)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHH
Confidence 2688999999999999999999999999999998877665543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=273.39 Aligned_cols=361 Identities=14% Similarity=0.146 Sum_probs=250.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccC---CCchhhHHHHHH---HHHHHHHhhhhhhhhhhhcCCchHHHHHH
Q 010350 113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFG---WNSSVAGLVQSS---FFWGYALSQLPGGWLAKIFGGRKVLQTGV 186 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~~~~~s~---~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 186 (512)
++.+...++..++.++|...++...|.+.++++ .+..+.+...++ .+++..++++++|+++||+|||+++.++.
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~ 100 (432)
T PRK10406 21 IWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISV 100 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344556667788889999999999999999985 455544444444 44455599999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhH--------HHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhh
Q 010350 187 LIWSLATALLPLLAGFM--------PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL 258 (512)
Q Consensus 187 ~~~~~~~~~~~~~~~~~--------~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 258 (512)
++++++.+++++ .+++ ..++++|+++|++.|..++...++++|++|+++|++..++...+...|.++++++
T Consensus 101 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~ 179 (432)
T PRK10406 101 CMMCFGSLVIAC-LPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV 179 (432)
T ss_pred HHHHHHHHHHhh-cCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999887754 3332 3689999999999999999999999999999999999999888888888888876
Q ss_pred hHHhc--------cccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHH
Q 010350 259 APPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWK 330 (512)
Q Consensus 259 ~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (512)
...+. +.+|||++|++.++.+++.......+||+++.+ +. +.+ +..+++
T Consensus 180 ~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~--------~~------------~~~---~~~~~~ 236 (432)
T PRK10406 180 VVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQE--------TR------------ALK---EAGSLK 236 (432)
T ss_pred HHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHH--------Hh------------hhc---ccccHH
Confidence 65443 257999999988777665544333333322110 00 000 012467
Q ss_pred HHhhcHhHHHHHHHHHH-hHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccch
Q 010350 331 AIFRSKAVWAMIYAHFC-GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMV 409 (512)
Q Consensus 331 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~ 409 (512)
+++++++.+...+..++ ....++.+.+|+|.|+++.+|++..+.+...+...++..++..+.|+++||+++|
T Consensus 237 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr------- 309 (432)
T PRK10406 237 GLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRR------- 309 (432)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-------
Confidence 88899888876665554 3677888999999999888899998998888888888889999999999999864
Q ss_pred hHHHHHHHhHHHHHHHHHh-hccCCCChHHHHHHHHHH-HHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhch-hhhh
Q 010350 410 RKICQTIAFLSPAVCMTLS-SIDLGLPHWEIVGILTAG-LALSSFALSGLYCTHQDISPEYASILLGITNTVGAV-PGIV 486 (512)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~i 486 (512)
+.......+......... ...........+.++..+ ...+...........+.+|+++|+++.|+.+.++++ .+..
T Consensus 310 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~ 388 (432)
T PRK10406 310 -TSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGS 388 (432)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhH
Confidence 222222221111111111 111111222222222222 222222233344456779999999999999988775 3445
Q ss_pred HHhhhhhcccccCcceEEEE
Q 010350 487 GVALTGYLLDSTHSWSVSYQ 506 (512)
Q Consensus 487 ~p~i~G~l~~~~g~~~~~f~ 506 (512)
.|.+.+.+ +..|+|...++
T Consensus 389 ~p~~~~~l-~~~g~~~~~~~ 407 (432)
T PRK10406 389 AEYVALSL-KSIGMETAFFW 407 (432)
T ss_pred HHHHHHHH-HHhCCCcHHHH
Confidence 78888855 55665654443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=271.42 Aligned_cols=357 Identities=14% Similarity=0.182 Sum_probs=264.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT 193 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 193 (512)
+.+..+.+..+..........+.+|.+.+++|.|..+.|++.+++.+++.++++++|+++||+|||+++.++.++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 82 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN 82 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence 34556666777788888889999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHH
Q 010350 194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY 273 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~ 273 (512)
++.+ .+++++.+++.|++.|++.+...+....++.+++++++|+++++++..+..+|..++|++++++.+..|||+.|+
T Consensus 83 ~l~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~ 161 (382)
T PRK10091 83 AMFT-LSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFL 161 (382)
T ss_pred HHHH-HhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHH
Confidence 7764 667789999999999999998888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHH
Q 010350 274 IFGLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH 352 (512)
Q Consensus 274 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (512)
+.+++.++..+. ...+|+.+++++ .+.+ .. .+.+|++..|......++.....
T Consensus 162 ~~~~~~~~~~~~~~~~lp~~~~~~~----~~~~---------------------~~-~~~~~~~~~~~~~~~~~~~~~~~ 215 (382)
T PRK10091 162 LIAVFNIAVLASIYFWVPDIRDEAK----GGLR---------------------EQ-FHFLRSPAPWLIFAATMFGNAGV 215 (382)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcccc----cCHH---------------------HH-HHHhcChHHHHHHHHHHHHHHHH
Confidence 998876655443 334554321100 0000 00 23567777777666555555555
Q ss_pred HHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccC
Q 010350 353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDL 432 (512)
Q Consensus 353 ~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (512)
+....+++.++.+.+|+++.+.+++.+...++.++++++.+++.||++++ +.. .....+.++...+.....
T Consensus 216 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~--------~~~-~~~~~~~~i~~~~~~~~~ 286 (382)
T PRK10091 216 FAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPL--------RIA-AVTDFIIVLALLMLFFFG 286 (382)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCch--------hHH-HHHHHHHHHHHHHHHHHH
Confidence 66677888888877899999999999999999999999999999999764 222 222222233222222111
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhhhhHh-hhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEEec
Q 010350 433 GLPHWEIVGILTAGLALSSFALSGLYCTH-QDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCP 508 (512)
Q Consensus 433 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~~~ 508 (512)
.......+..++.+.+.....+....... +..+++..+.+ ..++..++|.++||.++|.+.|..++|+..+.+.
T Consensus 287 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~ 361 (382)
T PRK10091 287 GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPA 361 (382)
T ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHH
Confidence 22222333333444443333333332233 32344445544 3467788999999999999999876688777654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=266.51 Aligned_cols=360 Identities=15% Similarity=0.108 Sum_probs=274.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 191 (512)
++...+.+.+..+...++...+.+.+|.+.+++|.|..+.++..+.+.+++.+++++.|+++||+|||+++.++.++.++
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 90 (406)
T PRK15402 11 ALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL 90 (406)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 34455556666667778888889999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHH
Q 010350 192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV 271 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~ 271 (512)
+.++.. .+++++.+++.|++.|++.+...+...+.+.|.+|+++|.+.+++......+|..++|.+++.+.++.+||+.
T Consensus 91 ~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~ 169 (406)
T PRK15402 91 TCLAIL-LAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGM 169 (406)
T ss_pred HHHHHH-HHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHH
Confidence 887764 5667789999999999999988888999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-hhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHH
Q 010350 272 FYIFGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSW 350 (512)
Q Consensus 272 f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (512)
|++.+++.++..+... ..|++++.+.++ .+. + + ....++.+++||.++...+..++...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (406)
T PRK15402 170 FVLFAALAALSFFGLWRAMPETAGRVGEK----LSL----K---E---------LGRDYKLVLKNRRFVAGALALGLVSL 229 (406)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcccccc----ccH----H---H---------HHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 9998888766554433 344432211110 000 0 0 01124678899999888877777777
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhh-
Q 010350 351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS- 429 (512)
Q Consensus 351 ~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 429 (512)
.......+.|.++++.+|.++.+.+.......++.+++.++.+++.||++++ +. ..++.+...+...+..
T Consensus 230 ~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~--------~~-~~~~~~~~~~g~~~~~~ 300 (406)
T PRK15402 230 PLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLR--------SL-IRMGLWPMVAGLLLAAL 300 (406)
T ss_pred HHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--------HH-HHHHHHHHHHHHHHHHH
Confidence 6677778889998888899999999888888888899999999999998764 22 2223222222222211
Q ss_pred ---ccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcce
Q 010350 430 ---IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWS 502 (512)
Q Consensus 430 ---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~ 502 (512)
....+..+.+.+.++.+++.+...+...... ...+++++|++.++.++...+|..+|+.+.|.+++..+.+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 375 (406)
T PRK15402 301 ATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGL 375 (406)
T ss_pred HHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHH-hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Confidence 1112233445556666666665554443333 33456899999999999999999999999999999877543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-31 Score=268.64 Aligned_cols=375 Identities=19% Similarity=0.221 Sum_probs=280.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT 193 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 193 (512)
+.++.+++..++..++...+++.+|.+.+++|.|..+.+++.+.+.++..++.+++|+++||+|||++++.+.++++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 89 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS 89 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 44566777788888899999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHH
Q 010350 194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY 273 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~ 273 (512)
++++ .+++++.+++.|+++|++.+...+...+++.|++|+++|++++++......+|..++|.+++.+.++.||||.|+
T Consensus 90 ~~~~-~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~ 168 (471)
T PRK10504 90 LFCA-LSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL 168 (471)
T ss_pred HHHH-HhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHH
Confidence 7664 567778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhh------------hhhhh--hh-----------------hhHHhhcC
Q 010350 274 IFGLLGIAWFSGFKILQEGETSNGATLAPRSNYI------------NMKKS--LS-----------------ASLEEMGE 322 (512)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~--~~-----------------~~~~~~~~ 322 (512)
+......+..+......++.+.+..+.+...... ...+. .. ...++...
T Consensus 169 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (471)
T PRK10504 169 INIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNN 248 (471)
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9877766554444333222211111111000000 00000 00 00011111
Q ss_pred CCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHc
Q 010350 323 SLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT 402 (512)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~ 402 (512)
.....+ .+++|||.++...+..++..........+.|.|++..+|.++.++++......++.+++.++.+++.||+++|
T Consensus 249 ~~~~~~-~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~ 327 (471)
T PRK10504 249 NRALFS-LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR 327 (471)
T ss_pred CCCccC-HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 111123 3588999999888888888888777778899999877899999999999888888888889999999999764
Q ss_pred CCCccchhHHHHHHHhHHHHHH-HHHhhccCCCChH-HHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhh
Q 010350 403 GVETTMVRKICQTIAFLSPAVC-MTLSSIDLGLPHW-EIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVG 480 (512)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 480 (512)
+. ...+.+..++. ..+.........+ ..+..++.|++.+...........+.+|++.++.+.|+.++..
T Consensus 328 --------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 398 (471)
T PRK10504 328 --------RV-LVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIM 398 (471)
T ss_pred --------HH-HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHH
Confidence 22 23333323322 2222222222222 2333455556666556666666667789999999999999999
Q ss_pred chhhhhHHhhhhhcccccC
Q 010350 481 AVPGIVGVALTGYLLDSTH 499 (512)
Q Consensus 481 ~lg~~i~p~i~G~l~~~~g 499 (512)
.+|..+|+.+.|.+.+..|
T Consensus 399 ~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 399 QLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998876
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=273.92 Aligned_cols=387 Identities=16% Similarity=0.223 Sum_probs=268.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 191 (512)
+++.+..+.+.+...+.++..+....|.+++ +|+|.++.+++.+++.++..+++++.|+++||+|||+++.++.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 103 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence 3455666666777777778878888888776 599999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHh---hhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhc-cccC
Q 010350 192 ATALLPLL---AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII-ENLG 267 (512)
Q Consensus 192 ~~~~~~~~---~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~g 267 (512)
+.++.+.. .+++..+++.|++.|++.+..++.....+.|++|+++|++++++++.+..+|..++|.+.+... .+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~ 183 (438)
T TIGR00712 104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND 183 (438)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh
Confidence 87665432 2456678889999999999999989999999999999999999999999999999988877544 4579
Q ss_pred chHHHHHHHHHHHHHH-HHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHH
Q 010350 268 WESVFYIFGLLGIAWF-SGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346 (512)
Q Consensus 268 w~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (512)
||+.|++.++++++.. +..++++|+++....+..++.+. +..+....+ ++.+.+.++..++.++|++.+|...+..+
T Consensus 184 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (438)
T TIGR00712 184 WHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRN-DYPDDYNEK-AEQELTAKEIFMQYVLPNKLLWYIAIANV 261 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhccc-ccccccccc-cccccchHHHHHHHHccCchHHHHHHHHH
Confidence 9999999888876654 34444555433211111000000 000000000 00000001111234788999999888888
Q ss_pred HhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHH
Q 010350 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT 426 (512)
Q Consensus 347 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (512)
+.....++..+|+|.|+++..|+++.+++++..+..+.+++++++.+++.||+++++. ............+...
T Consensus 262 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~------~~~~~~~~~~~~~~~~ 335 (438)
T TIGR00712 262 FVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNR------GATGVFFMTLVTIAVI 335 (438)
T ss_pred HHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc------cHHHHHHHHHHHHHHH
Confidence 8888888899999999998889999999999999999999999999999999965421 1111111111111111
Q ss_pred Hhhcc-CCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhh-hhHHhhhhhcccccCcceEE
Q 010350 427 LSSID-LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPG-IVGVALTGYLLDSTHSWSVS 504 (512)
Q Consensus 427 ~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~-~i~p~i~G~l~~~~g~~~~~ 504 (512)
..... ..+........++.+.+.............+..|++.+|++.|+.+...++|+ +++|.+.|.+.|..| |...
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~ 414 (438)
T TIGR00712 336 VYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGG 414 (438)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-chHH
Confidence 11111 11222222222333332211111112234566788999999999999988875 689999999999887 7766
Q ss_pred EEec
Q 010350 505 YQCP 508 (512)
Q Consensus 505 f~~~ 508 (512)
|++.
T Consensus 415 ~~~~ 418 (438)
T TIGR00712 415 FMVM 418 (438)
T ss_pred HHHH
Confidence 6543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=266.32 Aligned_cols=365 Identities=13% Similarity=0.077 Sum_probs=259.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHH
Q 010350 115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA 194 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 194 (512)
.+....++.++..+......++++.+.+++|.|..+.+++.+.+.+++.++.+++|+++||+|||+++..+.++++++.+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~ 93 (402)
T TIGR00897 14 NLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHA 93 (402)
T ss_pred hhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 34445555555555655566677777789999999999999999999999999999999999999999999998888765
Q ss_pred HHHH---hhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHH-HHHhhhhHHhccccCchH
Q 010350 195 LLPL---LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGS-VAGLLLAPPIIENLGWES 270 (512)
Q Consensus 195 ~~~~---~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~gw~~ 270 (512)
+... ..++++.+++.|++.|++.+...+...+.+.+++++++|++++|+...+.++|. +++|.+++.+.+..||+.
T Consensus 94 ~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~ 173 (402)
T TIGR00897 94 AFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMN 173 (402)
T ss_pred HHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHH
Confidence 4421 234667888999999999888777788888999999999999999999999996 689999999999899776
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHH
Q 010350 271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSW 350 (512)
Q Consensus 271 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (512)
.+|.......+..+..+++.++++++..+ +++++. . + ....++.++|+|.++...+..++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (402)
T TIGR00897 174 TLWSALAFVLTGGVIALFSNKDIFTPQHM-QTREKF-------S----E-----LGKAATILFTNPNVLLGGMVRIINTI 236 (402)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcccc-cCCcch-------h----h-----HHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 66655443333332222322221111100 000000 0 0 01124678899999988888888888
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHH---HHHH
Q 010350 351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAV---CMTL 427 (512)
Q Consensus 351 ~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 427 (512)
..+++.++.|.|+++ +|++..+.+.+.....++..++.+..|++.||+++|+ .......+..++ ++..
T Consensus 237 ~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~--------~~~~~~~l~~~~~~~~l~~ 307 (402)
T TIGR00897 237 GLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMN--------TVRWFGGVGCGIFTLALYY 307 (402)
T ss_pred HHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh--------HHHHHHHHHHHHHHHHHHH
Confidence 888999999999965 7999999998889999999999999999999998642 111111111111 1111
Q ss_pred hhc-cCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEE
Q 010350 428 SSI-DLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQ 506 (512)
Q Consensus 428 ~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~ 506 (512)
... ...+....++..++.|++.+...+ ..... ...+|++||++.|+.++..++|+.++|.+.|.+.|..| +...|.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~-~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~ 384 (402)
T TIGR00897 308 IPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVF-PTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVW 384 (402)
T ss_pred HHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHH-HhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHH
Confidence 111 112223334445555665554433 22333 34677899999999999999999999999999999988 544444
Q ss_pred ec
Q 010350 507 CP 508 (512)
Q Consensus 507 ~~ 508 (512)
+.
T Consensus 385 ~~ 386 (402)
T TIGR00897 385 IF 386 (402)
T ss_pred HH
Confidence 33
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=259.92 Aligned_cols=353 Identities=18% Similarity=0.190 Sum_probs=266.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHH
Q 010350 113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 192 (512)
++.+..+.+..+....+...+.+.+|.+.+++|.|..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 83 (385)
T TIGR00710 4 KAFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS 83 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence 35555555556667788888999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHH
Q 010350 193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF 272 (512)
Q Consensus 193 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f 272 (512)
.++.. ..++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.++.+||+.|
T Consensus 84 ~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 162 (385)
T TIGR00710 84 SLGLA-LSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIF 162 (385)
T ss_pred HHHHH-HHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 87764 56777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-hccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHH
Q 010350 273 YIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG 351 (512)
Q Consensus 273 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (512)
++.+++.++..+...+ .||+++.+.+ ++.+ + ....+++.+|+|.++...+...+....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (385)
T TIGR00710 163 AFLSLAGILLSALIFFILPETLPYEAR---IQIS-----T-------------YFETFLLLLKSKMFWGYALIYGASFGG 221 (385)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCccc---CCHH-----H-------------HHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 9988877665544433 4443322111 0000 0 011246778899988887777777777
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhh--
Q 010350 352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS-- 429 (512)
Q Consensus 352 ~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 429 (512)
.+....+.|.++++.+|.++.+.+.+.+...++.++++++.+++.||+++| + .. ..+.....+...+..
T Consensus 222 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~-------~-~~-~~~~~~~~~~~~~~~~~ 292 (385)
T TIGR00710 222 FFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAK-------S-LL-RMGLILFAVSAVLLEIT 292 (385)
T ss_pred HHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-------H-HH-HHHHHHHHHHHHHHHHH
Confidence 778888899999888899999999999999999999999999999999864 2 21 122222222211111
Q ss_pred -ccCCCChH-HHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccc
Q 010350 430 -IDLGLPHW-EIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDS 497 (512)
Q Consensus 430 -~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~ 497 (512)
........ .+....+.+++.+...+.......+.. |++++++.++.+++...++.+.+.+.|.+.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~ 361 (385)
T TIGR00710 293 AILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDF-PHVAGTASALFGTLRLVLGAIVGYLVSLIHGN 361 (385)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cccchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 11111222 223344455555555555554444443 57899999999999887666766677755554
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-31 Score=265.10 Aligned_cols=363 Identities=14% Similarity=0.139 Sum_probs=267.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT 193 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 193 (512)
..+..+.+.++...+.........|.+++++|+|..+.++..+.+.+++.+++++.|++.||+|||+++.++.++++++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~ 105 (438)
T PRK10133 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 45566777778888889999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHH--HhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcc-c-----
Q 010350 194 ALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-N----- 265 (512)
Q Consensus 194 ~~~~--~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~----- 265 (512)
+++. ..+++++.++++|+++|++.+...+...+++.++.++++|...+++.+....+|..++|.+++.+.. .
T Consensus 106 ~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~ 185 (438)
T PRK10133 106 ALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS 185 (438)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 7652 3467789999999999999999999999999998777777778999999999999999999876541 0
Q ss_pred --------------------cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCC
Q 010350 266 --------------------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLK 325 (512)
Q Consensus 266 --------------------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (512)
.+||++|+....+..+.+++..+.+.++.+..+. .++ + ....
T Consensus 186 ~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~-~~~-~----------------~~~~ 247 (438)
T PRK10133 186 QDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH-SDA-K----------------QGSF 247 (438)
T ss_pred hhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-ccc-c----------------ccch
Confidence 2466666544433332222222222221110000 000 0 0000
Q ss_pred CccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHH-HHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCC
Q 010350 326 DVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYF-SEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV 404 (512)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~ 404 (512)
...+++++++|.++...+..++.....+....|+|.|+ ++.+|+++.+++.......++.++++++++++.||+++|
T Consensus 248 ~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~-- 325 (438)
T PRK10133 248 SASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH-- 325 (438)
T ss_pred hhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH--
Confidence 11236788999988877777888888888888999886 556899999999999999999999999999999999864
Q ss_pred CccchhHHHHHHHhHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhh
Q 010350 405 ETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPG 484 (512)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~ 484 (512)
+.. ..+.++....+.+..... . .+.+..+.+.+++.+...+.......+..+ ++.+++.++.. +..+|+
T Consensus 326 ------~~l-~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~glg~~~i~P~~~s~a~~~~~-~~~~~as~l~~-~~~~g~ 394 (438)
T PRK10133 326 ------KVL-AAYALIAMALCLISAFAG-G-HVGLIALTLCSAFMSIQYPTIFSLGIKNLG-QDTKYGSSFIV-MTIIGG 394 (438)
T ss_pred ------HHH-HHHHHHHHHHHHHHHHcC-C-hHHHHHHHHHHHHHHHHHHHHHHHHHcccc-hhhccchhHHh-HHhccc
Confidence 222 222222222222222222 2 234556677888888888888877777544 45777888876 455789
Q ss_pred hhHHhhhhhcccccCcceEEEEe
Q 010350 485 IVGVALTGYLLDSTHSWSVSYQC 507 (512)
Q Consensus 485 ~i~p~i~G~l~~~~g~~~~~f~~ 507 (512)
.++|.+.|.+.|..|+.+..|++
T Consensus 395 ~~~~~i~G~l~~~~g~~~~~~~v 417 (438)
T PRK10133 395 GIVTPVMGFVSDAAGNIPTAELI 417 (438)
T ss_pred hHHHHHHHHHHHhccchHHHHHH
Confidence 99999999999987644444443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=253.41 Aligned_cols=364 Identities=20% Similarity=0.226 Sum_probs=285.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 191 (512)
.++.+.+-.++....++....+++..+.+.+++|+|..|.+++.++..+...+..++.|++.||+|.|++..++.++..+
T Consensus 12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~I 91 (417)
T COG2223 12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLI 91 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHH
Confidence 34666677777778888899999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHhhhh--HHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccC--
Q 010350 192 ATALLPLLAGF--MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-- 267 (512)
Q Consensus 192 ~~~~~~~~~~~--~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-- 267 (512)
-++..+...++ ++.+++++++.|++.+. +.+..+.++.+||++++|.++|++. ..++|..+..+++..+....|
T Consensus 92 P~~~~~~a~~~~~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~ 169 (417)
T COG2223 92 PCLGLAFAVTYPSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFL 169 (417)
T ss_pred HHHHHHHHccCCchHHHHHHHHHHhcccce-ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhH
Confidence 88777654433 34999999999999654 4788899999999999999999999 999999999999999999888
Q ss_pred -chHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHH
Q 010350 268 -WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346 (512)
Q Consensus 268 -w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (512)
|+....+..+..++..+..++.-++.++.+...++.. ...++.+++|++.|.+.+.++
T Consensus 170 ~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~---------------------~~~~~~v~~~~~~W~lsllY~ 228 (417)
T COG2223 170 AWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL---------------------PAQLKAVFSNKDTWLLSLLYF 228 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc---------------------hhHHHHHhcCcchHHHHHHHH
Confidence 9999988888777766655555444443211111110 023467889999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHH
Q 010350 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT 426 (512)
Q Consensus 347 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (512)
....++.++..++|.|+++++|.+..++|.+.....+.+.+.++++|+++||+|.+ |... ..+..++++..
T Consensus 229 ~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~--------rv~~-~~f~~~~~~~~ 299 (417)
T COG2223 229 ATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGR--------RVTL-AVFVGMALAAA 299 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccch--------hHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999975 2222 22222333333
Q ss_pred HhhccC------CCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCc
Q 010350 427 LSSIDL------GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHS 500 (512)
Q Consensus 427 ~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~ 500 (512)
...... .+....+..++.++++.+.-.-.....+.. ..+++.|.+.|+..+++++|+..-|...|...|..|+
T Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~-if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~ 378 (417)
T COG2223 300 LLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPV-IFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGS 378 (417)
T ss_pred HHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechH-HHHhhhhHHHHHHHHhccccccchhHHHHHHHHhccc
Confidence 222222 222333333444455444333333333333 4456899999999999999999999999999999998
Q ss_pred ceEEEEec
Q 010350 501 WSVSYQCP 508 (512)
Q Consensus 501 ~~~~f~~~ 508 (512)
++..|.+.
T Consensus 379 ~~~~f~~~ 386 (417)
T COG2223 379 YTGAFMLL 386 (417)
T ss_pred HHHHHHHH
Confidence 87666543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=261.59 Aligned_cols=358 Identities=14% Similarity=0.117 Sum_probs=248.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHH-HHHH-----HHHHHhhhhhhhhhhhcCCchHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQ-SSFF-----WGYALSQLPGGWLAKIFGGRKVLQTG 185 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~-s~~~-----~~~~~~~~~~g~l~dr~g~r~~~~~~ 185 (512)
|++....+++..++.++|+..++...|.+.++++.+..+.+.+. +... +...+++++.|+++||+|||++++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~ 92 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT 92 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence 45678888899999999999999999999999999887765443 3222 22246889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhh
Q 010350 186 VLIWSLATALLPLLAGFMP--------GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLL 257 (512)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 257 (512)
.++++++.++++ .+++++ .++++|+++|++.+...+....+++|++|+++|++++++......+|..+++.
T Consensus 93 ~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~ 171 (434)
T PRK15075 93 LSIMASGTLLIA-FVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAAL 171 (434)
T ss_pred HHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 999999988876 455544 46899999999999999999999999999999999999999988888888888
Q ss_pred hhHHhc--------cccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccH
Q 010350 258 LAPPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPW 329 (512)
Q Consensus 258 ~~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (512)
+++.+. +.+|||++|++..+...+.. +..+..++.. +....++ +.+ .+..+
T Consensus 172 ~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~----~~~~~~~e~~-------~~~~~~~---------~~~-~~~~~ 230 (434)
T PRK15075 172 LGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIF----LIRRSLEETE-------EFLARKH---------RPS-MREIF 230 (434)
T ss_pred HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHH----HHHHhcCCCH-------HHHHhhh---------ccc-cccHH
Confidence 777653 56899999987544322211 1111111100 0000000 000 01123
Q ss_pred HHHhhcHhHHHH-HHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccc
Q 010350 330 KAIFRSKAVWAM-IYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTM 408 (512)
Q Consensus 330 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~ 408 (512)
+...+++..+.. .+..++.....+....|.|.|+++.+|++..+.+++..+..++.+++.++.|+++||+++|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r------ 304 (434)
T PRK15075 231 RSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRR------ 304 (434)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------
Confidence 444566655544 3334445566777889999999988899999999888889999999999999999999864
Q ss_pred hhHHHHHHHhHHHHHHHH-HhhccCCCCh-HHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhch-hhh
Q 010350 409 VRKICQTIAFLSPAVCMT-LSSIDLGLPH-WEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAV-PGI 485 (512)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~ 485 (512)
+............... +......... ......++.+++.+...+.......+..|++.|+++.|+.+.++.. ++.
T Consensus 305 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~ 382 (434)
T PRK15075 305 --PVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGG 382 (434)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhh
Confidence 2222211111111111 1111111222 2222233444555544444445567778999999999997665554 688
Q ss_pred hHHhhhhhcccccC
Q 010350 486 VGVALTGYLLDSTH 499 (512)
Q Consensus 486 i~p~i~G~l~~~~g 499 (512)
++|.+.|++.|..|
T Consensus 383 ~~p~~~g~i~~~~g 396 (434)
T PRK15075 383 FTPAISTWLIHVTG 396 (434)
T ss_pred hHHHHHHHHHHhcC
Confidence 89999999999887
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-31 Score=261.37 Aligned_cols=372 Identities=24% Similarity=0.293 Sum_probs=269.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 191 (512)
+++.+....+.++...++........|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||+++..+.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 94 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSV 94 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHH
Confidence 44556666666777777788888899999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHH
Q 010350 192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV 271 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~ 271 (512)
+.++.. ..++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..||++.
T Consensus 95 ~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~ 173 (398)
T TIGR00895 95 FTLLCA-LATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSL 173 (398)
T ss_pred HHHHHH-HccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceee
Confidence 876664 5667788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHhhccCCCCCCCCCCcchhhhhhh--hhhhhh----HHhhcC-C-CCCccHHHHhhc---HhHH
Q 010350 272 FYIFGLLGIAW-FSGFKILQEGETSNGATLAPRSNYINMK--KSLSAS----LEEMGE-S-LKDVPWKAIFRS---KAVW 339 (512)
Q Consensus 272 f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~-~-~~~~~~~~~~~~---~~~~ 339 (512)
|++.+++.++. .+...++|++++....+..++......+ .....+ .++.++ . ..+..++.++++ +..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (398)
T TIGR00895 174 FYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITV 253 (398)
T ss_pred hhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHH
Confidence 99987655544 3344455554332111111110000000 000000 000000 0 001112223322 3344
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhH
Q 010350 340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFL 419 (512)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 419 (512)
...+..++.....+....++|.+. +.+|.+..+.+.......++.++++++.+++.||++++ .......+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~ 323 (398)
T TIGR00895 254 LLWLLYFMLLVGVYFLTNWLPKLM-VELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR---------VTALLLLL 323 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH---------HHHHHHHH
Confidence 445555566667777788889555 55799999999999999999999999999999999753 22222222
Q ss_pred HHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcc
Q 010350 420 SPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLL 495 (512)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~ 495 (512)
....+..+.. ...+........++.+++.+...+.......+.+|+++|+++.|+.+++..+|.+++|.++|++.
T Consensus 324 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ll 398 (398)
T TIGR00895 324 GAVFAVLVGS-TLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYLL 398 (398)
T ss_pred HHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhcC
Confidence 2222222222 12333444555667777777777777777888889999999999999999999999999999863
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-31 Score=260.36 Aligned_cols=352 Identities=13% Similarity=0.071 Sum_probs=261.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT 193 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 193 (512)
+.+..+.+..++..++...+.+.+|.+.+++|.|..++|++.+.+.+++.++++++|+++||+|||+++..+.++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~ 85 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGC 85 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777888999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHH
Q 010350 194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY 273 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~ 273 (512)
.+.+ .+++++.++++|+++|++.+...+...+.+.+..++++|+++++++..+..+|..+||.+++.+.+...|.. .+
T Consensus 86 ~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~-~~ 163 (381)
T PRK03633 86 AGLG-LMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVL-PW 163 (381)
T ss_pred HHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchH-HH
Confidence 7764 567789999999999999998888888888899999999999999999999999999999999887644433 33
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHH
Q 010350 274 IFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY 353 (512)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (512)
..+......+.. .+.+.+++.+ ++ + +..++++.+++|.++......++......
T Consensus 164 ~~~~~~~~~~~~-~~~~~~~~~~-~~----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (381)
T PRK03633 164 VTGLVLAAILPL-LFTRILNQQA-EN----H--------------------DSTSIWPMLKLRQARLGVNGCIISGIVLG 217 (381)
T ss_pred HHHHHHHHHHHH-HHhcccCCCC-CC----C--------------------CCCCHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 333222222111 1212111110 00 0 01123566788887765555555555566
Q ss_pred HHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCC
Q 010350 354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLG 433 (512)
Q Consensus 354 ~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (512)
....++|.|+++ .|.+..+.+.+.+...++.++++...+++.||++++ .....+.....++..... .
T Consensus 218 ~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~---------~~l~~~~~~~~~~~~~~~---~ 284 (381)
T PRK03633 218 SLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRL---------LVLRVQVFVVILGSIAML---S 284 (381)
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcH---------HHHHHHHHHHHHHHHHHh---h
Confidence 677889999976 599999999999999999999999999999999754 222222222222222211 1
Q ss_pred CChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEEec
Q 010350 434 LPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCP 508 (512)
Q Consensus 434 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~~~ 508 (512)
.........+.+.+.....+.......+..++++++...+..++..++|.+++|.+.|++.|.+| ++..|.+.
T Consensus 285 -~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~ 357 (381)
T PRK03633 285 -QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMI 357 (381)
T ss_pred -hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHH
Confidence 11222334445555555566666666677788888888888888899999999999999999987 76666554
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=271.75 Aligned_cols=381 Identities=18% Similarity=0.196 Sum_probs=258.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcccCCC--------chhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHH
Q 010350 118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWN--------SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW 189 (512)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s--------~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 189 (512)
.+.+..+...++...+.+.++.+..+++.+ ..+.+++.+++.++..++++++|+++||+|||++++++.+++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~ 111 (481)
T TIGR00879 32 IAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLF 111 (481)
T ss_pred HHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHH
Confidence 344444556677888888888888887777 899999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhhh--hHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhh---HHhcc
Q 010350 190 SLATALLPLLAG--FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA---PPIIE 264 (512)
Q Consensus 190 ~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~---~~l~~ 264 (512)
.++.++...... +++.+++.|++.|++.+...+...++++|++|+++|++++++++.+..+|..+++.++ +...+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 191 (481)
T TIGR00879 112 VIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNN 191 (481)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 888877643332 2348999999999999999999999999999999999999999999999999999999 77777
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcch--hhhhh----h---hhhh------hhHHhhcCCCCCccH
Q 010350 265 NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRS--NYINM----K---KSLS------ASLEEMGESLKDVPW 329 (512)
Q Consensus 265 ~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~---~~~~------~~~~~~~~~~~~~~~ 329 (512)
..+||+.|++.++..++.++..++++|+++....+.+.++ +.... . .... ...++.+.......+
T Consensus 192 ~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (481)
T TIGR00879 192 TLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSW 271 (481)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccH
Confidence 8899999999777666666666667665431110000000 00000 0 0000 000000000011113
Q ss_pred HHHhh------cHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcC
Q 010350 330 KAIFR------SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG 403 (512)
Q Consensus 330 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 403 (512)
+..++ .+.++...+..+...........+.|.+++ ..|++..+.+.+.....++.+++.++.+++.||+++|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~- 349 (481)
T TIGR00879 272 GSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE-NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR- 349 (481)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-
Confidence 33333 222333333333333334455667777775 4699998888888999999999999999999999864
Q ss_pred CCccchhHHHHHHHhHHHHHHHHHhh---ccCCC------ChHHHHHHHHHHHHHHHh-hhhhhhhHhhhcCcchhHHHH
Q 010350 404 VETTMVRKICQTIAFLSPAVCMTLSS---IDLGL------PHWEIVGILTAGLALSSF-ALSGLYCTHQDISPEYASILL 473 (512)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 473 (512)
+. ..++.+..++++.... ..... ....+....+.+.+.+.. .+.......+..|+++|+++.
T Consensus 350 -------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 421 (481)
T TIGR00879 350 -------PL-LLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGI 421 (481)
T ss_pred -------HH-HHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHH
Confidence 22 2222333333322222 11111 222222222333333322 233334446668889999999
Q ss_pred HHHHhhhchhhhhHHhhhhhcccccCcceEEEEecC
Q 010350 474 GITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCPP 509 (512)
Q Consensus 474 g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~~~~ 509 (512)
|+.+++.++|++++|.+.|.+.+..| |...|++.+
T Consensus 422 ~~~~~~~~lg~~i~~~~~~~~~~~~~-~~~~f~~~~ 456 (481)
T TIGR00879 422 SIAVAANWLANFIVGFLFPTMLESIG-VGGVFIFFG 456 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-ccceehhHH
Confidence 99999999999999999999999887 877776654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=263.22 Aligned_cols=366 Identities=17% Similarity=0.150 Sum_probs=253.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhh-hhccc--CCCchhhHHHH-----HHHHHHHHHhhhhhhhhhhhcCCchHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIP-MSHRF--GWNSSVAGLVQ-----SSFFWGYALSQLPGGWLAKIFGGRKVLQ 183 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--g~s~~~~~~~~-----s~~~~~~~~~~~~~g~l~dr~g~r~~~~ 183 (512)
+++.+....+..++.++|...++...|. +.+++ +.++. .+++. ++.+++..+++++.|+++||+|||+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~ 98 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence 4567777778888899999999888775 55555 66666 45543 3455667788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHH
Q 010350 184 TGVLIWSLATALLPLLAGFMP--------GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAG 255 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 255 (512)
++.++++++.++++ +++++. .++++|+++|++.+..++....++.|++|+++|++..+....+..+|.+++
T Consensus 99 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~ 177 (438)
T PRK09952 99 LTVWMMGIATALIG-LLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS 177 (438)
T ss_pred HHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999988875 455544 588999999999999999999999999999999999999999999999998
Q ss_pred hhhhHHhc--------cccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCc
Q 010350 256 LLLAPPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDV 327 (512)
Q Consensus 256 ~~~~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (512)
+.+...+. +.+|||+.|++.++..++........||+++.... +++ .+ +..++.
T Consensus 178 ~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~----~~~-----------~~---~~~~~~ 239 (438)
T PRK09952 178 TGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQ----QHE-----------QA---AAKKRI 239 (438)
T ss_pred HHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHH----Hhh-----------cc---cccccC
Confidence 87776654 35799999998877654433322223332211000 000 00 000011
Q ss_pred c-HHHHhhcHhHHHHHH-HHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCC
Q 010350 328 P-WKAIFRSKAVWAMIY-AHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVE 405 (512)
Q Consensus 328 ~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~ 405 (512)
+ .+.++++|+.+...+ ..++.....+....|.|.|+++.+|++......+....++..+++.++.|+++||+++|
T Consensus 240 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr--- 316 (438)
T PRK09952 240 PVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRR--- 316 (438)
T ss_pred CHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch---
Confidence 2 234667777766544 45555677788889999999888898887665556666777888899999999999864
Q ss_pred ccchhHHHHHHHhHHHHHHHHH--hhccCCCChHH-HHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhc-
Q 010350 406 TTMVRKICQTIAFLSPAVCMTL--SSIDLGLPHWE-IVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGA- 481 (512)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~- 481 (512)
+... .+.+...++... ......+..+. ++..++.+++.+...........+.+|+++|+++.|+.+....
T Consensus 317 -----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~ 390 (438)
T PRK09952 317 -----RVYI-TGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASV 390 (438)
T ss_pred -----HHHH-HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHH
Confidence 2222 222222222211 11112222333 2233444555554455555666777899999999999776654
Q ss_pred hhhhhHHhhhhhccccc-CcceEEEE
Q 010350 482 VPGIVGVALTGYLLDST-HSWSVSYQ 506 (512)
Q Consensus 482 lg~~i~p~i~G~l~~~~-g~~~~~f~ 506 (512)
+|+.++|.+.|++.|.. |+|...+.
T Consensus 391 lgg~~~p~i~g~l~~~~~~~~~~~~~ 416 (438)
T PRK09952 391 VGGGFTPFIAAALVTYFGGSWHSVAI 416 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 89999999999999865 35655443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-31 Score=261.88 Aligned_cols=352 Identities=16% Similarity=0.142 Sum_probs=257.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 192 (512)
+.+..+.+..+...++.....+.+|. +.+++|.|..+.|++.+++.+++.++++++|+++||+|||++++++.++++++
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~ 94 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS 94 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence 55667777788888888889999987 67899999999999999999999999999999999999999999998887776
Q ss_pred HHHHHHh--h-----hhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccc
Q 010350 193 TALLPLL--A-----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN 265 (512)
Q Consensus 193 ~~~~~~~--~-----~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 265 (512)
..++... . .++..+++.|+++|++.+...+....++.+++|+++|++++++......+|.++||.+++.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~ 174 (399)
T PRK05122 95 GLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW 174 (399)
T ss_pred HHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc
Confidence 5544322 1 13567899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHH
Q 010350 266 LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAH 345 (512)
Q Consensus 266 ~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (512)
.||++.+++.+++.++..+.....|+++ .. ..++ .++++.++ .++......
T Consensus 175 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~-----------------------~~~~~~~~--~~~~~~~~~ 225 (399)
T PRK05122 175 GGLAGLGLLIMLLALLGLLLARPRPAVP---PV-KGER-----------------------LPFRRVLG--RVWPYGMGL 225 (399)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCCCC---CC-Cccc-----------------------hhHHHHHH--HHHHHHHHH
Confidence 9999998876665544333222111111 00 0000 01122222 122222333
Q ss_pred HHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHH
Q 010350 346 FCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCM 425 (512)
Q Consensus 346 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (512)
.+..+.......++|.|+.+ .|. ...+...+...++.++++++.+++.||++++ +. ...+.....+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~--------~~-~~~~~~~~~~~~ 293 (399)
T PRK05122 226 ALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRLGGL--------RV-AIVSLLVEILGL 293 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccH--------HH-HHHHHHHHHHHH
Confidence 34445566677888988875 365 3456667778888899999999999998753 22 223333333333
Q ss_pred HHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEE
Q 010350 426 TLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSY 505 (512)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f 505 (512)
...... .+....++..++.|++.+...+.......+..+++++|++.|+++...++|..++|.+.|.+.|..| |+..|
T Consensus 294 ~~~~~~-~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~ 371 (399)
T PRK05122 294 LLLWLA-PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIF 371 (399)
T ss_pred HHHHHh-ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHH
Confidence 332222 2333444455667777766666655556677899999999999999999999999999999999887 77666
Q ss_pred Eec
Q 010350 506 QCP 508 (512)
Q Consensus 506 ~~~ 508 (512)
.+.
T Consensus 372 ~~~ 374 (399)
T PRK05122 372 LAA 374 (399)
T ss_pred HHH
Confidence 544
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-31 Score=271.20 Aligned_cols=383 Identities=16% Similarity=0.166 Sum_probs=260.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 191 (512)
+++.+..+.+.+++..++....++.+|.+.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||++++++.++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 97 (496)
T PRK03893 18 QWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSV 97 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 55677788888888899999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHH
Q 010350 192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV 271 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~ 271 (512)
+.++.+ ..++++.+++.|++.|++.+...+....++.|++++++|++++++...+..+|..++|.+++.+.++.+||+.
T Consensus 98 ~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~ 176 (496)
T PRK03893 98 GTLACG-FAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRAL 176 (496)
T ss_pred HHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Confidence 887775 5667789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCcch-hhhhhh--hhhhhhHHh------------hcCCCCCccHH------
Q 010350 272 FYIFGLLGIAWFSGFKILQEGETSNGATLAPRS-NYINMK--KSLSASLEE------------MGESLKDVPWK------ 330 (512)
Q Consensus 272 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~------------~~~~~~~~~~~------ 330 (512)
|++.++..++.++....+|++++.+..+..+.. +..... +........ .-.......+.
T Consensus 177 f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (496)
T PRK03893 177 FFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGL 256 (496)
T ss_pred HHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Confidence 987544433333333334443221111000000 000000 000000000 00000000000
Q ss_pred -----------H--HhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHh
Q 010350 331 -----------A--IFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFAD 397 (512)
Q Consensus 331 -----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d 397 (512)
+ ..+.+......+..++.....+....++|.|+++.+|++..+++.+.+...++.+++.++.|++.|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~d 336 (496)
T PRK03893 257 LCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGD 336 (496)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000011111111111111111235678999998778999999999999999999999999999999
Q ss_pred HHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCChHHH-HHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHH
Q 010350 398 NLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEI-VGILTAGLALSSFALSGLYCTHQDISPEYASILLGIT 476 (512)
Q Consensus 398 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 476 (512)
|+++| +. ...+..+..+.............+.+ ...++.+...............+..|++++|+++|+.
T Consensus 337 r~g~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 407 (496)
T PRK03893 337 WLGTR--------KA-YVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFT 407 (496)
T ss_pred Hhcch--------HH-HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchh
Confidence 99864 22 22222222222222221112222222 2222222222222333444556778889999999999
Q ss_pred HhhhchhhhhHHhhhhhcccccCcceEEE
Q 010350 477 NTVGAVPGIVGVALTGYLLDSTHSWSVSY 505 (512)
Q Consensus 477 ~~~~~lg~~i~p~i~G~l~~~~g~~~~~f 505 (512)
+.+..+|+.++|.+.|.+.|..| |...+
T Consensus 408 ~~~~~~g~~lgp~l~g~l~~~~g-~~~~~ 435 (496)
T PRK03893 408 YNVGALGGALAPILGALIAQRLD-LGTAL 435 (496)
T ss_pred hhhhhHHHHHHHHHHHHHhccCC-hHHHH
Confidence 99999999999999999999987 65444
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=260.30 Aligned_cols=352 Identities=15% Similarity=0.119 Sum_probs=249.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHH
Q 010350 115 LIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT 193 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 193 (512)
.+..+.+..++..+......+.+|. +.+++|.|..++|++.+++.+++.++++++|+++||+|||++++++.+...++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~ 95 (392)
T PRK12382 16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAG 95 (392)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHH
Confidence 3444555566667777888888886 678999999999999999999999999999999999999999999887766554
Q ss_pred HHHHH-------hhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcccc
Q 010350 194 ALLPL-------LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL 266 (512)
Q Consensus 194 ~~~~~-------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 266 (512)
+.... ...+++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|++++++.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (392)
T PRK12382 96 LAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF 175 (392)
T ss_pred HHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 32211 13467889999999999999888888899999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHH
Q 010350 267 GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346 (512)
Q Consensus 267 gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (512)
||++.+.+..+..++........++.++++ +++. ++++..+ .++...+..+
T Consensus 176 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----------------------~~~~~~~--~~~~~~~~~~ 226 (392)
T PRK12382 176 GFAALALTTMVLPLLAWAFNGTVRKVPAHA-----GERP----------------------SLWSVVG--LIWKPGLGLA 226 (392)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhccCCCCCc-----ccCc----------------------hHHHHHH--HHHHhHHHHH
Confidence 999887765544333322222222211100 0000 0111111 1222222233
Q ss_pred HhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHH
Q 010350 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT 426 (512)
Q Consensus 347 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (512)
+..........+.|.|+++ .+.+ +.+.......++.++++++.+++.||+++++ . ...+..+..+...
T Consensus 227 l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~--------~-~~~~~~~~~~~~~ 294 (392)
T PRK12382 227 LQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVK--------V-AIVSLLVETVGLL 294 (392)
T ss_pred HHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCe--------e-hHHHHHHHHHHHH
Confidence 3445556677888888876 4654 3555666677788889999999999997642 2 1222222233332
Q ss_pred HhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEE
Q 010350 427 LSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQ 506 (512)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~ 506 (512)
..... .+........++.+++.+...+.......+..++++||++.|+.++..++|..++|.+.|.+.|..| |+..|.
T Consensus 295 ~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~ 372 (392)
T PRK12382 295 LLWLA-PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFL 372 (392)
T ss_pred HHHHc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHH
Confidence 22222 2333344455666666665556555666677899999999999999999999999999999999987 777665
Q ss_pred ecC
Q 010350 507 CPP 509 (512)
Q Consensus 507 ~~~ 509 (512)
+.+
T Consensus 373 ~~~ 375 (392)
T PRK12382 373 AGA 375 (392)
T ss_pred HHH
Confidence 543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=269.79 Aligned_cols=356 Identities=13% Similarity=0.034 Sum_probs=263.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHH
Q 010350 119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL 198 (512)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 198 (512)
+.+..++..++.....+.+|.+.++++.+..+.|++.+.+.+++.++++++|+++||+|||+++.++.++.+++....+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~ 101 (417)
T PRK10489 22 VFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLAL 101 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHH
Confidence 33345556667777888899988899999999999999999999999999999999999999999887777666554432
Q ss_pred ----hhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHH
Q 010350 199 ----LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI 274 (512)
Q Consensus 199 ----~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~ 274 (512)
..++++.+++.|++.|++.+...+...+++.++.|+++|+++.++......+|..+||.+++.+.+..+|+|.|++
T Consensus 102 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~ 181 (417)
T PRK10489 102 NAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGL 181 (417)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHH
Confidence 1355678889999999998888888899999999999999999999999999999999999999998899999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHH
Q 010350 275 FGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYT 354 (512)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (512)
.++..++..+..+.+|++++++.++ ++.. + +. ...++.++++|.++...+..++... ...
T Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~---~-------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 241 (417)
T PRK10489 182 AAAGTFITLLPLLRLPALPPPPQPR----EHPL---R-------SL-----LAGFRFLLASPVVGGIALLGGLLTM-ASA 241 (417)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCccc----ccch---H-------HH-----HHHHHHHHcChHHHHHHHHHHHHHH-HHh
Confidence 8877766666666666543221110 0000 0 00 0123567788887766555544333 356
Q ss_pred HHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCC
Q 010350 355 CLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGL 434 (512)
Q Consensus 355 ~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (512)
...++|.|+++.+|+++...+++.+...++.+++.++.+++.||.+++ ..+..+.+...+.+...... .+
T Consensus 242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~---------~~l~~~~~~~~~~~~~~~~~-~~ 311 (417)
T PRK10489 242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG---------LLMLLSTLGSFLAVGLFGLM-PM 311 (417)
T ss_pred HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc---------hHHHHHHHHHHHHHHHHHcc-ch
Confidence 778899999887899999999999999999999999999998874321 22223333333333333222 22
Q ss_pred ChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEE
Q 010350 435 PHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSY 505 (512)
Q Consensus 435 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f 505 (512)
.....+..++.|++.+...+.......+..|+++||+++|+.++..++|..+||.+.|.+.|..| +...+
T Consensus 312 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~ 381 (417)
T PRK10489 312 WILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASA 381 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHH
Confidence 22334445555665554444444556677888999999999999999999999999999999887 44333
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-30 Score=256.36 Aligned_cols=359 Identities=15% Similarity=0.149 Sum_probs=270.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHH
Q 010350 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL 195 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 195 (512)
++.+++.++..++.....++.+|.+++++|+|..+.|++.+.+.+++.++.++.|++.||+|||+++.++.++++++.++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l 84 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL 84 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 45666777777888888899999999999999999999999999999999999999999999999999999999888876
Q ss_pred HHHh--hhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccc--------
Q 010350 196 LPLL--AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-------- 265 (512)
Q Consensus 196 ~~~~--~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-------- 265 (512)
.... .++++.+++.|++.|+|.+...+...+++.+..|+++|++.+++.+....+|..++|.+++.+...
T Consensus 85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~ 164 (410)
T TIGR00885 85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD 164 (410)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 5322 356789999999999999999999999999999999999999999999999999999999877532
Q ss_pred ------------------cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCc
Q 010350 266 ------------------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDV 327 (512)
Q Consensus 266 ------------------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (512)
.+||++|++.+++.++..+...+.+.++.++.+ ++++ ....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~--~~~~-------------------~~~~ 223 (410)
T TIGR00885 165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSD--AKQI-------------------SFSA 223 (410)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc--cccc-------------------cchh
Confidence 369999999888776655444333332211100 0000 0011
Q ss_pred cHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc-CCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCc
Q 010350 328 PWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEEL-SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET 406 (512)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~ 406 (512)
..++++|+|.++...+..+++........++++.|.++.. +.+...++...+....+..+|+++.+++.||+++|
T Consensus 224 ~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~---- 299 (410)
T TIGR00885 224 SLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH---- 299 (410)
T ss_pred hHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH----
Confidence 2357789999998888888888888788899999997532 34444455566666788899999999999999764
Q ss_pred cchhHHHHHHHhHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhh
Q 010350 407 TMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIV 486 (512)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 486 (512)
+. ..+..+...++.++..... .....+.+.+.+++.+..++.......+..+++.+..+.++..++ +|+++
T Consensus 300 ----~~-l~i~~~~~~~~~ll~~~~~--~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~ 370 (410)
T TIGR00885 300 ----KV-LMAYAIIGMALCLGSIFAG--GHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGI 370 (410)
T ss_pred ----HH-HHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccch
Confidence 33 2233333333333333322 233455566777777778888888888877776655555555544 99999
Q ss_pred HHhhhhhccccc-----CcceEEEEec
Q 010350 487 GVALTGYLLDST-----HSWSVSYQCP 508 (512)
Q Consensus 487 ~p~i~G~l~~~~-----g~~~~~f~~~ 508 (512)
.|++.|.+.|.. |+++.+|++.
T Consensus 371 ~p~l~G~~~d~~~~~~~~~~~~~~~~~ 397 (410)
T TIGR00885 371 VPPLQGFIIDMKEIAAAPAVNTSFILP 397 (410)
T ss_pred HHHHHHHHHHHhcccccCccchHHHHH
Confidence 999999999964 4566666554
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=255.77 Aligned_cols=337 Identities=17% Similarity=0.202 Sum_probs=254.1
Q ss_pred hhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010350 129 DKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVL 208 (512)
Q Consensus 129 ~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (512)
....+++.+|.+.+++|+|..+.+++.+++.+++.+++++.|+++||+|||+++.++.++.+++.++. ..++.+.+++
T Consensus 15 ~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 92 (355)
T TIGR00896 15 ALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR--SAPGTALLFA 92 (355)
T ss_pred ccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH--HhccHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999988877776554 4466688899
Q ss_pred HHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcccc--CchHHHHHHHHHHHHHHHHH
Q 010350 209 SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL--GWESVFYIFGLLGIAWFSGF 286 (512)
Q Consensus 209 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--gw~~~f~~~~~~~~~~~~~~ 286 (512)
.|++.|++.+...+....++.++++ ++|++++++++....+|..+++.+++.+.++. +||+.|.+.+++.++...
T Consensus 93 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~-- 169 (355)
T TIGR00896 93 GTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL-- 169 (355)
T ss_pred HHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--
Confidence 9999999998888788888889886 68999999999999999999999999888765 399998877665443322
Q ss_pred HhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 010350 287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE 366 (512)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~ 366 (512)
.++++.++++.++.. ......++++|+|.+|...+..++....++....++|.|+++
T Consensus 170 ~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~- 226 (355)
T TIGR00896 170 AWIPQVRRRVAANQT----------------------TTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS- 226 (355)
T ss_pred HHhhhhccccCCCCC----------------------CCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 233332221110000 001123567889998887777777777888888999999986
Q ss_pred cCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCChHHHHHHHHHH
Q 010350 367 LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAG 446 (512)
Q Consensus 367 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 446 (512)
.|.+..+.+.+.+...++.++++++.|++.||++.+ +.....+.++.+++............+ ...++.|
T Consensus 227 ~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~g 296 (355)
T TIGR00896 227 HGASAATAGSLLALMQLAQAASALLIPALARRVKDQ--------RGIVAVLAVLQLVGLCGLLFAPMHGLW--AWALVLG 296 (355)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc--------hHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHH
Confidence 699999999999999999999999999999999643 222223333333333322222212111 2345567
Q ss_pred HHHHHhhhhhhhhHhhhc-CcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceE
Q 010350 447 LALSSFALSGLYCTHQDI-SPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSV 503 (512)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~ 503 (512)
++.+...+.......+.. ++++++...++.+.+.+++++++|.+.|++.|..|+|.+
T Consensus 297 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~~ 354 (355)
T TIGR00896 297 LGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWLM 354 (355)
T ss_pred HhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 766666655444444333 456789999999999999999999999999999998764
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-30 Score=255.21 Aligned_cols=352 Identities=14% Similarity=0.041 Sum_probs=253.2
Q ss_pred HHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHH-HHHHHHHHHHHHHH
Q 010350 121 LAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT-GVLIWSLATALLPL 198 (512)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~~~~~~~~~ 198 (512)
+.+++..++.....+.+|. +.+++|.|..+.|++.+++.+...+.++++|+++||+|||+.+++ +.++..++..+. .
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~-~ 82 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF-A 82 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH-H
Confidence 4466777888888888887 578999999999999999999999999999999999999887665 444444454444 4
Q ss_pred hhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhH--HHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHH
Q 010350 199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA--VSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG 276 (512)
Q Consensus 199 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~ 276 (512)
.+++++.+++.|++.|.+.+...|...++..|+.++++|+.. .+....+.++|.+++|.+++.+.+..|||+.|++.+
T Consensus 83 ~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~ 162 (375)
T TIGR00899 83 WNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAA 162 (375)
T ss_pred hcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHH
Confidence 567778888899999988888888888888898887777654 578888889999999999999999999999999998
Q ss_pred HHHHHHHHHHH-hhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHH
Q 010350 277 LLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355 (512)
Q Consensus 277 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (512)
++.++..+..+ ++||+++.+.++. + ..++++.++++.++...+..++........
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (375)
T TIGR00899 163 LAFVLCGVLVWLFLPSYPRGAPGAL-T-----------------------RLEVRGLLASRDTRLLFVACTLMWGCNILY 218 (375)
T ss_pred HHHHHHHHHHHHhCCCcccCccccc-C-----------------------cchhhhhhcCcchHHHHHHHHHHHHHHHHH
Confidence 87766554443 4555432211100 0 001234566777776666555555555566
Q ss_pred HHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCC
Q 010350 356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLP 435 (512)
Q Consensus 356 ~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (512)
..++|.|+++.+|.++.+.+.+.........++.++.+++.||+++| +. ..+..+...+........ .+.
T Consensus 219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~--------~~-~~~~~~~~~~~~~~~~~~-~~~ 288 (375)
T TIGR00899 219 IINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKR--------RL-MLLAALAGVAFYTGLAAD-NSL 288 (375)
T ss_pred HhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch--------hH-HHHHHHHHHHHHHHHHHH-HHH
Confidence 77889999888899999999888877777888899999999999864 22 222222222222222221 122
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEEecC
Q 010350 436 HWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCPP 509 (512)
Q Consensus 436 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~~~~ 509 (512)
...+...++.+++.+...+.......+ ..|+++++++|+.+...++|..++|.+.|.+.|..| |+..|.+.+
T Consensus 289 ~~~~~~~~~~g~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~ 360 (375)
T TIGR00899 289 WALLMLQLLNAIFIGILAGIGMLYFQD-LMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAI 360 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHH
Confidence 223333444555555555444444444 445677899999999999999999999999999887 776665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-29 Score=252.79 Aligned_cols=352 Identities=13% Similarity=0.128 Sum_probs=263.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT 193 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 193 (512)
+.+..+.+..++.++....+.+.+|.+.+++|.|..+.+++.+++.+++.++++++|+++||+|||+++..+.++..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 85 (401)
T PRK11043 6 GFLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGS 85 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHH
Confidence 33444444455667788888899999999999999999999999999999999999999999999999999998888887
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHH
Q 010350 194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY 273 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~ 273 (512)
++.. ..++++.+++.|++.|++.+...+...+++.|+++++++++..+.......+|..++|.+++++.++.|||+.|+
T Consensus 86 ~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~ 164 (401)
T PRK11043 86 LGML-WVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFA 164 (401)
T ss_pred HHHH-HhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 7664 566778999999999999888888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHH
Q 010350 274 IFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY 353 (512)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (512)
+.+++.++..+..+++++++++++. ++ ++..+++++|+|.++...+...+.....+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (401)
T PRK11043 165 TLFAITLLLILPTLRLKPSKKARKQ----SQ--------------------DALTFKQLLKSKTYLGNVLIFAACSAAFF 220 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccc----ch--------------------HHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence 9888877666555555543321110 00 01134677888888876666666666667
Q ss_pred HHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhcc-C
Q 010350 354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID-L 432 (512)
Q Consensus 354 ~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 432 (512)
....+.|.++++ .|++..+.++......++..+++.+.+++.||+++++. . ....+...+....+.+.... .
T Consensus 221 ~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~ 293 (401)
T PRK11043 221 AWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQL-----L-PWLLVLFAVSVIAIWLASLLSH 293 (401)
T ss_pred HHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH-----H-HHHHHHHHHHHHHHHHHHHhcc
Confidence 778889999875 69999999988888888889999999999999876410 0 11111111111111111111 1
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhccccc
Q 010350 433 GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDST 498 (512)
Q Consensus 433 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~ 498 (512)
......+....+.+++.+...+.......+.. ++++|++.|+.++.+..++..++.+.|.+.|..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 358 (401)
T PRK11043 294 PSLVPLLIPFCVMAAANGAIYPIVVAQALRPF-PQATGKAAALQNTLQLGLCFLASLLVSALISTP 358 (401)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-cccChHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 12222333344556666655665554444433 578999999999999999999999999998753
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-29 Score=249.85 Aligned_cols=353 Identities=16% Similarity=0.138 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHH
Q 010350 113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 192 (512)
++.+....+..++..+....+.+.+|.+.+++|.|..+.+++.+++.+++.++++++|+++||+|||+++.++.++..++
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~ 86 (394)
T PRK11652 7 VNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILG 86 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence 35555555555566677788888999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHH
Q 010350 193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF 272 (512)
Q Consensus 193 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f 272 (512)
.++.. ..++++.+++.|++.|++.+...+....+..|.++++++++++++...+..++..++|.+++.+.+..|||+.|
T Consensus 87 ~~~~~-~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f 165 (394)
T PRK11652 87 TLVAL-FAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACY 165 (394)
T ss_pred HHHHH-HHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHH
Confidence 87664 56777899999999999998888888888999999999999999999999999999999999999989999999
Q ss_pred HHHHHHHHHHHH-HHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHH
Q 010350 273 YIFGLLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG 351 (512)
Q Consensus 273 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (512)
++.+++.++..+ ..++.||+++.+++ +++ ....++..+++|.++...+..+.....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (394)
T PRK11652 166 LFLLLLGAGVTFSMARWMPETRPADAR----RTR-------------------VLASYRTLLSNRRFNCYLLMLIGTLAG 222 (394)
T ss_pred HHHHHHHHHHHHHHHHhCCccCccccc----hhH-------------------HHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 998877665443 33445553321110 000 011245677888888766666666666
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhcc
Q 010350 352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID 431 (512)
Q Consensus 352 ~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (512)
...+..+.|.++++.+|++..+.+++.....++.+++..+.+++.||.++. ............+........
T Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 294 (394)
T PRK11652 223 IAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--------MWQSVICCLLAGLLMWIPGWF 294 (394)
T ss_pred HHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHh
Confidence 666677888899888899999999988888888888888899999988631 122222222222222222211
Q ss_pred -CCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhccccc
Q 010350 432 -LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDST 498 (512)
Q Consensus 432 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~ 498 (512)
..+.........+.+++.+...+.......+.. |+++|++.++.+....+|+.+++.++|.+.+..
T Consensus 295 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 361 (394)
T PRK11652 295 GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPF-PYLAGTAGALLGGLQNIGSGLAALLSAMLPQTG 361 (394)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 112233344455666666666666666565544 578899999999999999999999999887653
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-29 Score=253.48 Aligned_cols=353 Identities=15% Similarity=0.174 Sum_probs=260.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHH
Q 010350 117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL 196 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 196 (512)
..+.+..+...+....+.+.+|.+.+++|.+..+.++..+++.+++.++++++|+++||+|||++++.+.++++++.+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~ 98 (413)
T PRK15403 19 MALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAAT 98 (413)
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 34445555667788899999999999999999999999999999999999999999999999999999999998888776
Q ss_pred HHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHH
Q 010350 197 PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG 276 (512)
Q Consensus 197 ~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~ 276 (512)
. .+++++.++++|+++|++.+...+....++.|++++++|++++++......+|..+||++++.+.++.|||+.|++.+
T Consensus 99 ~-~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~ 177 (413)
T PRK15403 99 L-FTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIA 177 (413)
T ss_pred H-HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4 567789999999999999887777778889999999999999999999999999999999999999899999999998
Q ss_pred HHHHHHHHH-HHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHH
Q 010350 277 LLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355 (512)
Q Consensus 277 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (512)
++.++..+. .+.+||++++++++. .. +. . ...+++++|||.+|...+..++.....+.+
T Consensus 178 ~~~~i~~~~~~~~lp~~~~~~~~~~-~~------~~----~---------~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~ 237 (413)
T PRK15403 178 VMGLIAFVGLLLAMPETVKRGAVPF-SA------KS----V---------LRDFRNVFRNRLFLTGAATLSLSYIPMMSW 237 (413)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCC-Ch------HH----H---------HHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 887765544 344565433211100 00 00 0 113468889999999888888888888888
Q ss_pred HHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHH-HhhccCCC
Q 010350 356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT-LSSIDLGL 434 (512)
Q Consensus 356 ~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 434 (512)
..+.|.++++.+|+++.+.++.......+.+++..+.+++.++..++ |...........+..+. .......+
T Consensus 238 ~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~-------~~~~~~~~~~~ig~~l~~~~~~~~~~ 310 (413)
T PRK15403 238 VAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEP-------RFIWRAVPIQLVGLALLIVGNLLWPH 310 (413)
T ss_pred HHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch-------hHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 88999999998899999999988888888888777777665443221 11101111111111111 11000112
Q ss_pred Ch-HHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhccccc
Q 010350 435 PH-WEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDST 498 (512)
Q Consensus 435 ~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~ 498 (512)
.. +.++...+.+++.+...+........ ..+..+|++.|+.+.....+..+++.+.|++.+..
T Consensus 311 ~~~~~~~~~~l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~ 374 (413)
T PRK15403 311 VWLWSVLGTSLYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNG 374 (413)
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22 23445555566666555554432221 23335799999999999999999999999998763
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-30 Score=258.06 Aligned_cols=370 Identities=17% Similarity=0.232 Sum_probs=269.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhh-hhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 192 (512)
.++..++..++..+.+...++.+ +..+.+|.+....+.+.+.++|+++|++++++++.+.||++..+.+....+++++.
T Consensus 45 ~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~ 124 (495)
T KOG2533|consen 45 FILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLF 124 (495)
T ss_pred HHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHH
Confidence 34555666677777887766655 55588999999999999999999999999999999999999999998888888887
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhc------ccc
Q 010350 193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII------ENL 266 (512)
Q Consensus 193 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~------~~~ 266 (512)
.++.+. ..+++.+++.|++.|+..+..+|....+++.||.+++|++.+|++.+...+|+++|++++..+. ...
T Consensus 125 ~~~~~~-~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~ 203 (495)
T KOG2533|consen 125 GFLTAA-VHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA 203 (495)
T ss_pred HHHHHH-HhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC
Confidence 766654 6778999999999999999999999999999999999999999999999999999999999863 357
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHH
Q 010350 267 GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346 (512)
Q Consensus 267 gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (512)
||||.|++.|+++++..++.++.-++.+.+....+++|+....++......+...++.+...+++.+++|.+|...+..+
T Consensus 204 gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~ 283 (495)
T KOG2533|consen 204 GWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYF 283 (495)
T ss_pred CceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHH
Confidence 99999999999998876555544444444334444444333322222222222222266677899999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHH-HHHHhHHHHHHH
Q 010350 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKIC-QTIAFLSPAVCM 425 (512)
Q Consensus 347 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 425 (512)
+.....+++.+|+|.|+.+..|++..++..+.++..++++++.+++|.++||.+.- ..++.. .....+...+..
T Consensus 284 ~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~-----~~~~~~~~~~~~~~~~~g~ 358 (495)
T KOG2533|consen 284 FLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTI-----FARRLLFIVFLCLYAIIGA 358 (495)
T ss_pred HHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999885579999999999999999999999999999995300 002222 222333333332
Q ss_pred HHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhH-HHHHHHHhhhchhhhhHHhh
Q 010350 426 TLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYAS-ILLGITNTVGAVPGIVGVAL 490 (512)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g-~~~g~~~~~~~lg~~i~p~i 490 (512)
...... ........+.+....+.....+...........++.+. +..+......+.+++++|.+
T Consensus 359 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~ 423 (495)
T KOG2533|consen 359 ISLLAA-AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQL 423 (495)
T ss_pred HHHHhh-ccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhh
Confidence 332322 22233333333333434444444444455555554444 44555555556666655554
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-29 Score=249.36 Aligned_cols=347 Identities=11% Similarity=-0.034 Sum_probs=264.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHH-HHHHHHHHHH
Q 010350 119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVL-IWSLATALLP 197 (512)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~-~~~~~~~~~~ 197 (512)
+.+.++..++......|++|.+.+++|.|..++|++.+++.+...++++++|+++||+||+........ ...+..+...
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~ 88 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFS 88 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 556677777788889999999999999999999999999999999999999999999998543322211 1112222232
Q ss_pred HhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHH
Q 010350 198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL 277 (512)
Q Consensus 198 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~ 277 (512)
..+++++.+++.|+++|.+.+...|...++..++ +++|++.+|......++|.+++|++++.+.+++|||+.|++.++
T Consensus 89 ~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~ 166 (382)
T TIGR00902 89 AGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTA 166 (382)
T ss_pred HhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 3567788999999999999998888888887654 47889999999999999999999999999999999999988766
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHH
Q 010350 278 LGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLS 357 (512)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (512)
..++..+ .+.++++.+++++.. ++ +..+...+++++|||++|...+..++...+......
T Consensus 167 ~~~~~~~-~~~~~~~~~~~~~~~-~~------------------~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~ 226 (382)
T TIGR00902 167 GLAFMLI-GFLIKPTIPPKDAIP-ED------------------ESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYG 226 (382)
T ss_pred HHHHHHH-HHHcCCCCCCCcccc-cc------------------ccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHH
Confidence 5333332 333333211111100 00 000112357889999999999988988889999999
Q ss_pred HHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCChH
Q 010350 358 WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHW 437 (512)
Q Consensus 358 ~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (512)
+.|.|+++ .|.+..+.|.+.....++.+++..+.+++.||++.+ ..+.++.+...+....... .++...
T Consensus 227 ~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~---------~~l~~~~~~~~~~~~~~~~-~~~~~~ 295 (382)
T TIGR00902 227 FSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR---------DLLLISAIACVGRWAIIGA-IEAFPL 295 (382)
T ss_pred HHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH---------HHHHHHHHHHHHHHHHHHh-HhhHHH
Confidence 99999976 799999999999999999999999999999998753 3334444444444444333 233344
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHh-hhchhhhhHHhhhhhcccccC
Q 010350 438 EIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNT-VGAVPGIVGVALTGYLLDSTH 499 (512)
Q Consensus 438 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~lg~~i~p~i~G~l~~~~g 499 (512)
.+...++.++.++...+.....+.+. |++++++.++++++ ..++|.+++|.++|+++|..|
T Consensus 296 ~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g 357 (382)
T TIGR00902 296 IFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG 357 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 55667888888888888888778776 88899999999874 567999999999999999987
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.2e-30 Score=256.44 Aligned_cols=361 Identities=14% Similarity=0.107 Sum_probs=261.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchh-----hHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSV-----AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLI 188 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 188 (512)
+.+..+.+..++..++...+.+.+|.+.+++|.+..+ .+++.+++.++..++++++|+++||+|||+++..+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 93 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALG 93 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHH
Confidence 3444556667777788888899999999999998655 48899999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCc
Q 010350 189 WSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW 268 (512)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw 268 (512)
.+++..+.. ..++++.+++.|++.|++.+ ..+....++.+.+++++|++++++......+|.+++|.+++.+.+..+|
T Consensus 94 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 171 (408)
T PRK09874 94 MGIVMVLMG-LAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGL 171 (408)
T ss_pred HHHHHHHHH-HHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 888776664 56777899999999999865 5677788899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHH-hhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHH-HHHHH
Q 010350 269 ESVFYIFGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAM-IYAHF 346 (512)
Q Consensus 269 ~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 346 (512)
|+.|++.+++.++..+... +.+++++...++ ++. . .+ ...+.+++++++.. ....+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~----~~---------~~~~~~~~~~~~~~~~~~~~ 229 (408)
T PRK09874 172 RPVFFITASVLFLCFLVTLFCIRENFQPVSKK----EML-----H----MR---------EVVTSLKNPKLVLSLFVTTL 229 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcccccch----hhh-----H----HH---------HHHHhCcCCchHHHHHHHHH
Confidence 9999998887766554443 344432111100 000 0 00 01344566665543 33334
Q ss_pred HhHHHHHHHHHHHHHHHHHhcCCChh---hhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHH
Q 010350 347 CGSWGHYTCLSWLPTYFSEELSLNLT---EAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAV 423 (512)
Q Consensus 347 ~~~~~~~~~~~~~p~~l~~~~g~s~~---~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (512)
+..........++|.|+.+..+.... ..+.+....+++.+++.+..+++.||++++ .....+.+...+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~---------~~~~~~~~~~~~ 300 (408)
T PRK09874 230 IIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPE---------KILITALIFSVL 300 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---------hhHHHHHHHHHH
Confidence 44445556677888888765332221 245566667788888999999999999864 122223333333
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceE
Q 010350 424 CMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSV 503 (512)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~ 503 (512)
..+..... .+.....+..++.|++.+...+.......+..+++++|+.+|+.+.+..+|.++||.++|.+.+..| |+.
T Consensus 301 ~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~ 378 (408)
T PRK09874 301 LLIPMSFV-QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRA 378 (408)
T ss_pred HHHHHHHh-ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhH
Confidence 33222221 2233344455666777776666666666677888999999999999999999999999999999887 777
Q ss_pred EEEecC
Q 010350 504 SYQCPP 509 (512)
Q Consensus 504 ~f~~~~ 509 (512)
.|++.+
T Consensus 379 ~f~~~~ 384 (408)
T PRK09874 379 VFLVTA 384 (408)
T ss_pred HHHHHH
Confidence 766544
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-29 Score=250.60 Aligned_cols=343 Identities=16% Similarity=0.119 Sum_probs=251.6
Q ss_pred HHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHh
Q 010350 121 LAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL 199 (512)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 199 (512)
...++...+.....+.++. +.+++|.|..++|++.+...+...+.++++|+++||+|||+++.++.++.+++.++.. .
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~-~ 95 (400)
T PRK11646 17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMA-I 95 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHH-H
Confidence 4445555666666677665 6789999999999999999999999999999999999999999999999988887764 5
Q ss_pred hhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHH
Q 010350 200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLG 279 (512)
Q Consensus 200 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~ 279 (512)
.++++.+++.|++.|++.+...+...+++.+++|+++|++++++......+|..+||.+++.+. ..|||+.|++.+++.
T Consensus 96 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~ 174 (400)
T PRK11646 96 AHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLF 174 (400)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHH
Confidence 6677889999999999998888889999999999999999999999999999999999999998 779999999988776
Q ss_pred HHHHHH-HHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHH
Q 010350 280 IAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSW 358 (512)
Q Consensus 280 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (512)
++..+. .++.|++++. + .+++ ....+++++++|.++...+..+...........+
T Consensus 175 ~~~~i~~~~~~~~~~~~--~---~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (400)
T PRK11646 175 VLAAAFNAWLLPAYKLS--T---VRTP-------------------VREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLM 230 (400)
T ss_pred HHHHHHHHHhCCccccc--c---cchh-------------------hHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHh
Confidence 655433 3333332110 0 0000 0113467788888876655555544444445678
Q ss_pred HHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCChHH
Q 010350 359 LPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWE 438 (512)
Q Consensus 359 ~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (512)
+|.|+++. +.++.+.+.+.+...++...+....+++.||..+. ++. ...+....++........ .+....
T Consensus 231 ~p~~~~~~-~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~-------~~~-~~~~~~~~~~~~~~l~~~-~~~~~~ 300 (400)
T PRK11646 231 LPIMVNDI-AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRL-------EHR-LMAGLLIMSLSMFPIGMV-SNLQQL 300 (400)
T ss_pred hhhhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-------hHH-HHHHHHHHHHHHHHHHHh-hhHHHH
Confidence 89999876 44778888888887777766665556666542211 112 223333333333222222 222333
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccC
Q 010350 439 IVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTH 499 (512)
Q Consensus 439 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g 499 (512)
.+...+.+.+.+...+.......+..|++++|++.|+.+...++|..+||.++|.+.|..+
T Consensus 301 ~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 301 FTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 3334455566665666666677777899999999999999999999999999999999864
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=258.39 Aligned_cols=371 Identities=13% Similarity=0.122 Sum_probs=263.8
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc---
Q 010350 100 ASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--- 176 (512)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--- 176 (512)
|.+|+.+| |.+ .+.+.++.+++........+|.+.++.|.|..+++.+ +.....+ ++.+++|+++||+
T Consensus 5 ~l~~~~~~------~~~-~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~ 75 (491)
T PRK11010 5 YLRIFQQP------NSA-ILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPP 75 (491)
T ss_pred HHHHHccc------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHccccc
Confidence 44565544 333 3444455677777888888999999999999999997 4444444 6899999999999
Q ss_pred --CCchH-HHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhH
Q 010350 177 --GGRKV-LQTGVLIWSLATALLPLLA--GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFG 251 (512)
Q Consensus 177 --g~r~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 251 (512)
|||+. ++++.++.+++..++++.. ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|
T Consensus 76 ~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG 155 (491)
T PRK11010 76 FLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLA 155 (491)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHH
Confidence 99885 6577666666665554432 356788889999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHhcc-ccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHH
Q 010350 252 SVAGLLLAPPIIE-NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWK 330 (512)
Q Consensus 252 ~~~~~~~~~~l~~-~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (512)
.++++.+++++.+ ..|||+.|++.+++.++..+..++.+|+++.... +++. ++ ....+++
T Consensus 156 ~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~--~~~~-----~~------------~~~~~l~ 216 (491)
T PRK11010 156 MLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPV--PKTL-----EQ------------AVVAPLR 216 (491)
T ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccc--ccch-----hh------------hHHHHHH
Confidence 9999999999998 5799999999998877666655556654321100 0000 00 0011346
Q ss_pred HHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHh-hhhHHHHHHHHHHHHHHHhHHHHcCCCccch
Q 010350 331 AIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVS-ILPPLASVLVTSIAAQFADNLIATGVETTMV 409 (512)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~-~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~ 409 (512)
+.++++..|...+..++..........+.+.|+.+.+|++..+.+.+. ....++.+++.+++|++.||++++
T Consensus 217 ~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~------- 289 (491)
T PRK11010 217 DFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLF------- 289 (491)
T ss_pred HHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------
Confidence 677788777776666666667677778888898777899999999887 456689999999999999999864
Q ss_pred hHHHHHHHhHHHHH--HHHHhhccCCCChHH-HHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhh
Q 010350 410 RKICQTIAFLSPAV--CMTLSSIDLGLPHWE-IVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIV 486 (512)
Q Consensus 410 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 486 (512)
+.....+.+.... .+..... ...+.+. ....++..+..+..............+++..++..|+.+...++|..+
T Consensus 290 -~~l~i~~~l~~l~~l~~~~l~~-~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~ 367 (491)
T PRK11010 290 -RALMIFGILQGVSNAGYWLLSI-TDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVY 367 (491)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 2222222211111 1111112 1222222 222333333333333444455566678889999999999999999999
Q ss_pred HHhhhhhcccccCcceEEEEec
Q 010350 487 GVALTGYLLDSTHSWSVSYQCP 508 (512)
Q Consensus 487 ~p~i~G~l~~~~g~~~~~f~~~ 508 (512)
++.+.|++.|..| |+..|.+.
T Consensus 368 ~~~~~G~l~~~~G-~~~~f~~~ 388 (491)
T PRK11010 368 VGPVAGWFVEAHG-WPTFYLFS 388 (491)
T ss_pred HHHHHHHHHHHhC-hHHHHHHH
Confidence 9999999999887 77665543
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=248.68 Aligned_cols=347 Identities=17% Similarity=0.157 Sum_probs=242.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHH
Q 010350 118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL 196 (512)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 196 (512)
..++.++..+.....+.+..|. +.+++|+|..+.+++.+++.+++.++++++|+++||+|||+.++++.++..++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~ 84 (366)
T TIGR00886 5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA 84 (366)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 4666677778888899999995 999999999999999999999999999999999999999999999999999988777
Q ss_pred HHhhh-hHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcc----------c
Q 010350 197 PLLAG-FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE----------N 265 (512)
Q Consensus 197 ~~~~~-~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----------~ 265 (512)
+ ..+ +++.+++.|++.|++.+. .+....+++|++|+++|++++++......+|..+++.+++.+.+ +
T Consensus 85 ~-~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 85 G-LAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred H-HHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 5 455 778999999999999654 56678899999999999999999998888888888877776654 3
Q ss_pred cCchHHHHH-HHHHHHHHHHH-HHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHH
Q 010350 266 LGWESVFYI-FGLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIY 343 (512)
Q Consensus 266 ~gw~~~f~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (512)
.+|||.|++ .+++..+..+. ..+.+++++.+.++.+.+.+ ..... . +.......++.+++|+++...+
T Consensus 163 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T TIGR00886 163 LAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFK----GARWS----V--GTGALGDQLKVFRDRHTWILAL 232 (366)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccc----ccccc----c--cchhHHHHHHHHhccchhhHHH
Confidence 489999944 45544443333 33334433221110000000 00000 0 0000013467788999988888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHH
Q 010350 344 AHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAV 423 (512)
Q Consensus 344 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (512)
..++.....+....++|.|+++.+|+++.+++.+.....+.+++++++.+++.||+++| +.............
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~-------~~~~~~~~~~~~~~ 305 (366)
T TIGR00886 233 LYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGA-------RKLLMSFLGVAMGA 305 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccc-------hhHHHHHHHHHHHH
Confidence 88877777888899999999988999999999999999999999999999999999875 22222222221111
Q ss_pred HHHHhhccCCCChHH-HHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhh
Q 010350 424 CMTLSSIDLGLPHWE-IVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPG 484 (512)
Q Consensus 424 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~ 484 (512)
.++..........+. ....++..+..+...........+ ..++++|++.|+.++++++|+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 306 FLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPH-IFRRATGAVSGLVGAIGNLGG 366 (366)
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchh-hchhhcccHHHHHHHhccCCC
Confidence 111111111102222 222233333333333333333333 446899999999999998864
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=247.10 Aligned_cols=336 Identities=31% Similarity=0.454 Sum_probs=283.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHH
Q 010350 118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP 197 (512)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 197 (512)
.+.+..+...++.....+..|.+.+++|.+..+.+++.+...++..++++++|+++||+|||+.+.++.++..++..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~ 82 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA 82 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence 34556667778888899999999999999999999999999999999999999999999999999999999988887765
Q ss_pred HhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHH
Q 010350 198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL 277 (512)
Q Consensus 198 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~ 277 (512)
..++++.+++.|++.|++.+...+...+++.|++|+++|++.+++......+|..++|.+++.+.+..+||+.+++.++
T Consensus 83 -~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (352)
T cd06174 83 -FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAI 161 (352)
T ss_pred -HhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4577799999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHH
Q 010350 278 LGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLS 357 (512)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (512)
+.++..+...+++ |.++...+..++..........
T Consensus 162 ~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 196 (352)
T cd06174 162 LGLLLALLLLFLL---------------------------------------------RLLLLLALAFFLLSFGYYGLLT 196 (352)
T ss_pred HHHHHHHHHHHHH---------------------------------------------HHHHHHHHHHHHHHhHHHHHHH
Confidence 8776665554443 4566777778888888899999
Q ss_pred HHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCChH
Q 010350 358 WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHW 437 (512)
Q Consensus 358 ~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (512)
+.|.++++.+|.+..+.+...+...++..++.++.+++.||+++| ++ ....+.....++....... .+...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~i~~~~~~~~-~~~~~ 267 (352)
T cd06174 197 YLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR-------RL-LLLIGLLLAALGLLLLALA-PSLAL 267 (352)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hH-HHHHHHHHHHHHHHHHHHh-ccHHH
Confidence 999999887799999999999999999999999999999999865 11 3333444444444333332 22344
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEEecC
Q 010350 438 EIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCPP 509 (512)
Q Consensus 438 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~~~~ 509 (512)
.....++.+++.+...+.......+..|+++|++..|+.+...++|..++|.+.|.+.|..| |+..|++.+
T Consensus 268 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~ 338 (352)
T cd06174 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILA 338 (352)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHH
Confidence 45666777787777778788888888899999999999999999999999999999999776 776665443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=260.08 Aligned_cols=385 Identities=17% Similarity=0.172 Sum_probs=252.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc--------CCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRF--------GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQ 183 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~ 183 (512)
..+..+...++.+...++...+++..|.+++++ +.+..+.+++.+++.++..++++++|+++||+|||++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~ 89 (479)
T PRK10077 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK 89 (479)
T ss_pred HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 345666667777888889999999888888877 889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-----------hhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHH
Q 010350 184 TGVLIWSLATALLPLL-----------AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGS 252 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 252 (512)
++.++++++.++.+.. .+.+..++++|+++|++.+...+...++++|++|+++|++++++...+..+|.
T Consensus 90 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~ 169 (479)
T PRK10077 90 IAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQ 169 (479)
T ss_pred HHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHH
Confidence 9999988877665431 12246788999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHhc--------cccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhh--hhhh---hhhhhhHHh
Q 010350 253 VAGLLLAPPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNY--INMK---KSLSASLEE 319 (512)
Q Consensus 253 ~~~~~~~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~ 319 (512)
++++.+++.+. +..|||+.|++.++..++..+..+++||+++....+.+.++.. .++. +......++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (479)
T PRK10077 170 LVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQE 249 (479)
T ss_pred HHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHH
Confidence 99988876553 4579999999988887776666667777643211111111100 0000 000000000
Q ss_pred hcCCCC--CccHHHHhhcHhHHH---HHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHH
Q 010350 320 MGESLK--DVPWKAIFRSKAVWA---MIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQ 394 (512)
Q Consensus 320 ~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~ 394 (512)
..+... ....+..+.-..... .....+......+...++.|.++++ .|++....+......++..+++.++.++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~g~ 328 (479)
T PRK10077 250 IKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFTVLAIM 328 (479)
T ss_pred HHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 000000000000000 0111111222233445667777754 6888877777778888899999999999
Q ss_pred HHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhcc-C-C-CChHHHHHHHHHHHHHHH-hhhhhhhhHhhhcCcchhH
Q 010350 395 FADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID-L-G-LPHWEIVGILTAGLALSS-FALSGLYCTHQDISPEYAS 470 (512)
Q Consensus 395 l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g 470 (512)
+.||+++| .....+.+..+++....... . . ...+.....++.+.+.+. ..+.......+.+|+++|+
T Consensus 329 l~dr~g~r---------~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 399 (479)
T PRK10077 329 TVDKFGRK---------PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG 399 (479)
T ss_pred HHHHhcCh---------HHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHH
Confidence 99999854 22333333333333322211 1 1 112222333333333332 2244455667778899999
Q ss_pred HHHHHHHhhhchhhhhHHhhhhh------cccccCcceEEEEe
Q 010350 471 ILLGITNTVGAVPGIVGVALTGY------LLDSTHSWSVSYQC 507 (512)
Q Consensus 471 ~~~g~~~~~~~lg~~i~p~i~G~------l~~~~g~~~~~f~~ 507 (512)
++.|+.+.++++|.++++.+.+. +.|..| +...|++
T Consensus 400 ~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~ 441 (479)
T PRK10077 400 KALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWI 441 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHH
Confidence 99999999999999988766654 445555 4555544
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=252.08 Aligned_cols=356 Identities=11% Similarity=0.045 Sum_probs=257.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHH
Q 010350 116 IGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA 194 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 194 (512)
+..+.+..++...+.....+.+|. +.+++|+|..++|++.+++.++..++++++|+++||+|||++++++.++.+++.+
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~ 88 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI 88 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence 334555666667777777777765 6678999999999999999999999999999999999999999999988888776
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHH
Q 010350 195 LLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI 274 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~ 274 (512)
+.+ +.++++.++++|++.|.+.+...+...++..|..++++|++++++.....++|.+++|.+++++.+ .+|++.|++
T Consensus 89 ~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~ 166 (395)
T PRK10054 89 AIP-LVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWL 166 (395)
T ss_pred HHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHH
Confidence 664 456677888889999888887888889999999999999999999999999999999999999885 699999998
Q ss_pred HHHHHHHHHHHH-HhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHH
Q 010350 275 FGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY 353 (512)
Q Consensus 275 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (512)
.+++.++..+.. +++++++++++++ +++ ....++.+|||.++...+..++......
T Consensus 167 ~~~~~~i~~i~~~~~~~~~~~~~~~~---~~~--------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 223 (395)
T PRK10054 167 AAICSAFPLVFIQIWVQRSEKAIATE---TGS--------------------VWSPSVLLQDKALLWFTCSGFLASFVSG 223 (395)
T ss_pred HHHHHHHHHHHHHHHHhccccccccc---hhh--------------------hhhhhhhccCceehHHHHHHHHHHHHHH
Confidence 887776654433 3344443221100 000 0011567789998888877777777766
Q ss_pred HHHHHHHHHHHHh--cCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhcc
Q 010350 354 TCLSWLPTYFSEE--LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID 431 (512)
Q Consensus 354 ~~~~~~p~~l~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (512)
....+.+.|+... .+.+....+.+.....+.........+++.||.++| .....+..+.++........
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~l~~~~~~~~~~~~~~~~~ 294 (395)
T PRK10054 224 AFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIR---------PLMTAGTLCFVIGLVGFIFS 294 (395)
T ss_pred HhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCch---------hHHHHHHHHHHHHHHHHHHc
Confidence 6667777777543 345556667777777777777777888888887643 22233333333333222221
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEEe
Q 010350 432 LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQC 507 (512)
Q Consensus 432 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~~ 507 (512)
..+.........+.+++.+...+.....+.+..|++.+++..|..+ ...+|.++||.++|.+.|+.| +...|.+
T Consensus 295 ~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g-~~~~~~~ 368 (395)
T PRK10054 295 GNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP-PWSLFVI 368 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC-hhhHHHH
Confidence 1222223344556666665555655566777788899999998765 667899999999999999987 5444443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-31 Score=247.52 Aligned_cols=379 Identities=15% Similarity=0.158 Sum_probs=277.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 191 (512)
.++.+.++++...+.+++++.+....+.+++.+|++++..|++.+.+.+.++++.|++|+++|||.||+++.+|..+|.+
T Consensus 31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~ 110 (493)
T KOG1330|consen 31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTL 110 (493)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHH
Confidence 34677788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccC-chH
Q 010350 192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WES 270 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~~ 270 (512)
+.+..+ +++.+|++.++|.+.|+|.+...+..+++++|.++.++|++.+++++.+..+|..+|.+.+..+.+..+ |||
T Consensus 111 Av~~~~-fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~ 189 (493)
T KOG1330|consen 111 AVFASG-FSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRW 189 (493)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEE
Confidence 998886 457789999999999999999999999999999999999999999999999999999999999998776 999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHH
Q 010350 271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSW 350 (512)
Q Consensus 271 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (512)
.|+..+++++++.++.+++.++++++...+.+.+....+ +.....+..+.+.|++.+....+......+
T Consensus 190 af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~-----------~~ts~~kDl~~l~~~~v~v~~sl~~~a~~f 258 (493)
T KOG1330|consen 190 AFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVK-----------PFTSVWKDLKVLAKIKVFVLSSLGIIAAQF 258 (493)
T ss_pred EEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCC-----------CccchHHHHHHHHccCceeeehHHHHHHHH
Confidence 999999999888766665544444332222211111000 011112233556666776666666666666
Q ss_pred HHHHHHHHHHHHHHH---hcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhH--HHHHHHhHHHHHHH
Q 010350 351 GHYTCLSWLPTYFSE---ELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRK--ICQTIAFLSPAVCM 425 (512)
Q Consensus 351 ~~~~~~~~~p~~l~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 425 (512)
....+..|.|.++.. ..|++....-++..+...++.+|...+|.++||+.+...+....+. .....+....+..+
T Consensus 259 v~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L 338 (493)
T KOG1330|consen 259 VIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFL 338 (493)
T ss_pred hccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHH
Confidence 666777777776643 2355555666677888889999999999999998764333222111 11222222222233
Q ss_pred HHhhccCCCChHHHHHHHHHHHHHHHhhhhhh-hhHhhhcCcchhHHHHHHHHhhhch-hhhhHHhhhhhcccccCcce
Q 010350 426 TLSSIDLGLPHWEIVGILTAGLALSSFALSGL-YCTHQDISPEYASILLGITNTVGAV-PGIVGVALTGYLLDSTHSWS 502 (512)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~l-g~~i~p~i~G~l~~~~g~~~ 502 (512)
.+.........+....+++.|........... ....+.+||++|.++.++...+..+ |.+-+|.+.|.+.|..-.|.
T Consensus 339 ~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~ 417 (493)
T KOG1330|consen 339 FLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK 417 (493)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence 33333222333334444555555444444333 3345668999999999999988876 55556669999999764344
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=244.24 Aligned_cols=351 Identities=13% Similarity=0.057 Sum_probs=252.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHH
Q 010350 117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL 196 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 196 (512)
..+.+..++..++...+....+.+.+++|.+..+.+++.+.+.+++.++.+++|+++||+|||++++++.++++++.+++
T Consensus 6 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~ 85 (393)
T PRK11195 6 YAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM 85 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH
Confidence 34566677777766666677777788999999999999999999999999999999999999999999999988877665
Q ss_pred HHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHH
Q 010350 197 PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG 276 (512)
Q Consensus 197 ~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~ 276 (512)
+ ...+ .++.|+++|++.+...|...+++.|++|+++|++++++......+|.++||.++|++.+. .|+..+++.+
T Consensus 86 ~-~~~~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~ 160 (393)
T PRK11195 86 L-FGIH---PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCA 160 (393)
T ss_pred H-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3 3333 278899999999999999999999999999999999999999999999999999999885 4777777766
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHH
Q 010350 277 LLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCL 356 (512)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (512)
...++..+..+.+|+++++++....+..+. . ++. ...++.++++|.+.......++.........
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------~----~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (393)
T PRK11195 161 LIYLLAALFNLFIPRLGARRPGQSWNPIAL------L----RDF-----FHACRVLWRDKLGRFSLAGTTLFWGAGATLR 225 (393)
T ss_pred HHHHHHHHHHhcCCCCcccccccCCCHHHH------H----HHH-----HHHHHHHHhCchhHHHHHHHHHHHHHHHHHH
Confidence 555444444555665432211111000000 0 000 0113567788877766555555555556667
Q ss_pred HHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCCh
Q 010350 357 SWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPH 436 (512)
Q Consensus 357 ~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (512)
..+|.|+++.+|.++.+.|.+.+...++.+++.+..+++.||.+++ +. ...+.+. +........ ..+..
T Consensus 226 ~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~--------~~-~~~g~~~-~~~~~~~~~-~~~~~ 294 (393)
T PRK11195 226 FLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVL--------RV-LPAGILM-GLVVLLMAL-QHSLL 294 (393)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--------ch-HHHHHHH-HHHHHHHHH-HhHHH
Confidence 7788889888999999999999999999999999999988876543 11 2222222 222222222 11222
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhhhcCcch-hHHHHHHHHhhhchhhhhHHhhhhhcccccC
Q 010350 437 WEIVGILTAGLALSSFALSGLYCTHQDISPEY-ASILLGITNTVGAVPGIVGVALTGYLLDSTH 499 (512)
Q Consensus 437 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g 499 (512)
+.....++.|++.+...++......+..+++. +|++.|+.++.++++..++..+.+.+ +..|
T Consensus 295 ~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~ 357 (393)
T PRK11195 295 PAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLG 357 (393)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcC
Confidence 23444556677666666555555555433333 69999999999999999999999966 4445
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-29 Score=248.95 Aligned_cols=352 Identities=18% Similarity=0.161 Sum_probs=251.8
Q ss_pred HHHHhhhhhhhhhhhhhcccC--CCchhhHHHHHH-----HHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHH
Q 010350 125 ICNMDKVNLSVAIIPMSHRFG--WNSSVAGLVQSS-----FFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP 197 (512)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~g--~s~~~~~~~~s~-----~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 197 (512)
..++++..++...+.+.+++. .+.++.+...+. ..++..+++++.|+++||+|||+++.++.++..++.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 83 (394)
T TIGR00883 4 VEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIG 83 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 456788888887777766654 445556554443 2333346889999999999999999999999988887775
Q ss_pred HhhhhHH--------HHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhc------
Q 010350 198 LLAGFMP--------GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII------ 263 (512)
Q Consensus 198 ~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~------ 263 (512)
. .+++. .+++.|+++|++.+...+...+++.|++++++|++..++...+..+|.+++++++..+.
T Consensus 84 ~-~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 84 L-LPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred h-CCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 4 44433 58899999999999999999999999999999999999999999999999999877654
Q ss_pred --cccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHh--HH
Q 010350 264 --ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKA--VW 339 (512)
Q Consensus 264 --~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 339 (512)
+..+||+.|++.+++.++........+|+++.+..+. +++....++++.++++. ++
T Consensus 163 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~ 222 (394)
T TIGR00883 163 ALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE--------------------KHKKKRGPIRETLTKHRKPFL 222 (394)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh--------------------ccccccCCHHHHHHhchHHHH
Confidence 3578999999877766555444444444322111000 00111223456666655 66
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhH
Q 010350 340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFL 419 (512)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 419 (512)
...+..++.....+....++|.|+++.+|.+..+.+.+.....++..++.++.+++.||+++| +.......+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~--------~~~~~~~~~ 294 (394)
T TIGR00883 223 LGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRR--------PVLIIFTVL 294 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchH--------HHHHHHHHH
Confidence 667777777777888889999999888899999999999999999999999999999999864 222222222
Q ss_pred HHHHH-HHHhhc-cCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHH-hhhchhhhhHHhhhhhccc
Q 010350 420 SPAVC-MTLSSI-DLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITN-TVGAVPGIVGVALTGYLLD 496 (512)
Q Consensus 420 ~~~~~-~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~lg~~i~p~i~G~l~~ 496 (512)
..... ...... ...+........++.+++.+...+.......+.+|+++|+++.|+.+ ....+|..++|.+.|.+.|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~ 374 (394)
T TIGR00883 295 AALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA 374 (394)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence 22222 111111 12222333444555666666666777777788889999999999854 4456788899999999999
Q ss_pred ccCcceEEE
Q 010350 497 STHSWSVSY 505 (512)
Q Consensus 497 ~~g~~~~~f 505 (512)
..|.|...+
T Consensus 375 ~~g~~~~~~ 383 (394)
T TIGR00883 375 MTGDWYAIG 383 (394)
T ss_pred HcCcchhHH
Confidence 988555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-28 Score=241.88 Aligned_cols=348 Identities=15% Similarity=0.128 Sum_probs=247.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT 193 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 193 (512)
|.+....+..++...+...+.+++|.+.+++|.|..+.++..+++.++..+++++.|+++||+|||++++++.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~ 82 (392)
T PRK10473 3 RFLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIAS 82 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHH
Confidence 34445555566666777788889999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHH
Q 010350 194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY 273 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~ 273 (512)
.+.. ..++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..|||+.|+
T Consensus 83 ~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~ 161 (392)
T PRK10473 83 LLCS-LAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFY 161 (392)
T ss_pred HHHH-HhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHH
Confidence 7764 566778889999999999999899999999999999999999999999999999999999999988899999999
Q ss_pred HHHHHHHHHHHH-HHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHH
Q 010350 274 IFGLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH 352 (512)
Q Consensus 274 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (512)
+.+++.++..+. ...++|+++++.+ ++... ....++.++++.++...+...+.....
T Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (392)
T PRK10473 162 TMAAMGILVLLLSLFILKETRPARAP---AASSK-------------------PRENSESLLNRFFLSRLVITTLSVTVI 219 (392)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccC---Cccch-------------------HHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 988877665544 3445544322110 00000 001245678888776665555555555
Q ss_pred HHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccC
Q 010350 353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDL 432 (512)
Q Consensus 353 ~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (512)
.....+.|.++++.+|+++.+.+.+.+...++.+++.++.+++.||+++| +. ...+.+...+.........
T Consensus 220 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~--------~~-~~~~~~~~~~~~~~~~~~~ 290 (392)
T PRK10473 220 LTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPR--------TL-MLTSQVLFLAAGITLALSP 290 (392)
T ss_pred HHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--------HH-HHHHHHHHHHHHHHHHHHH
Confidence 56677788888888899999999999999999999999999999999864 22 2233222222222222211
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccC
Q 010350 433 GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTH 499 (512)
Q Consensus 433 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g 499 (512)
..........+.+.+.+....... .....|.++++ |..++...++..+++.++|.+.+..|
T Consensus 291 -~~~~~~~~~~l~~~g~~~~~~~~~--~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g 351 (392)
T PRK10473 291 -SHAVSLFGITLICAGFSVGFGVAM--SQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLG 351 (392)
T ss_pred -HHHHHHHHHHHHHHHHHHHhHHHH--HHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 112222223333333332222221 12222333332 33344455666777777777777766
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-28 Score=240.30 Aligned_cols=335 Identities=20% Similarity=0.274 Sum_probs=246.1
Q ss_pred HhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010350 128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV 207 (512)
Q Consensus 128 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (512)
+....+.+.+|.+.+++|+|..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++..+.. ..++++.++
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~ 83 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACA-LAQTIDQLI 83 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHH-HHccHHHHH
Confidence 4556777899999999999999999999999999999999999999999999999999999888887774 566778999
Q ss_pred HHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHH-H
Q 010350 208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSG-F 286 (512)
Q Consensus 208 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~-~ 286 (512)
+.|++.|++.+...+...+++.|++++++|++++++......+|..++|.+++.+.+..+||+.|++.+++.++..+. .
T Consensus 84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (377)
T PRK11102 84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVF 163 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988877665444 3
Q ss_pred HhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 010350 287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE 366 (512)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~ 366 (512)
++.+|++++++++. .+.+ + ...++++.+++|.++...+..++.....+....+.|.++.+.
T Consensus 164 ~~~~~~~~~~~~~~-~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (377)
T PRK11102 164 FFIPETLPKERRQP-FHLR-----T-------------TIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIEL 224 (377)
T ss_pred HhCCccCcccccCC-CChH-----H-------------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 44554432211100 0000 0 011245678888888877777777777777788888888888
Q ss_pred cCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHH---HHHHHHHhhccCCCChHH-HHHH
Q 010350 367 LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLS---PAVCMTLSSIDLGLPHWE-IVGI 442 (512)
Q Consensus 367 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~ 442 (512)
+|+++.+.+.+.....++.++++.+.+++.||+++| +. ...+... ..+.+..... .....+. .+..
T Consensus 225 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~--------~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 294 (377)
T PRK11102 225 NGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGAL--------NM-LRFGLWIQFIMGIWLVVSAL-LDLGFWALVVGV 294 (377)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--------HH-HHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHH
Confidence 899999999999999999999999999999999864 22 2222211 1111111111 1112222 2222
Q ss_pred HHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhh-chhhhhHHhhhhh
Q 010350 443 LTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVG-AVPGIVGVALTGY 493 (512)
Q Consensus 443 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~lg~~i~p~i~G~ 493 (512)
.+.+.+.+...........+ ..|++++++.++.+... .+|..+++.+.+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~g~~~g~~~~~~ 345 (377)
T PRK11102 295 AAFVGCVSMISSNAMAVILD-EFPHMAGTASSLAGTLRFGIGAIVGALLSLA 345 (377)
T ss_pred HHHHHHHHHhhHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22222233333333333333 45688999999988765 4666666666543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-28 Score=239.23 Aligned_cols=341 Identities=13% Similarity=0.044 Sum_probs=251.3
Q ss_pred HHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCc----hHHHHHHHHHHHHHHHHHH
Q 010350 123 FVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGR----KVLQTGVLIWSLATALLPL 198 (512)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~~~~~~~~~ 198 (512)
++..+.+...+.+++|.+.+++|.|..++|++.+++.++..++++++|+++||+||| +.+.++..+. ......
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~---~~~~~~ 89 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF---AVAFWF 89 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH---HHHHHH
Confidence 555556778899999999999999999999999999999999999999999999994 3333222221 122233
Q ss_pred hhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHH
Q 010350 199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL 278 (512)
Q Consensus 199 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~ 278 (512)
..++++.+++.|++.|++.+...+...++..++ .++|+++++......++|.++||++++++.+++|||..|++.++.
T Consensus 90 ~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~ 167 (382)
T PRK11128 90 GAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAG 167 (382)
T ss_pred hcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 456778888999999999988888888887776 356888889999999999999999999999999999999987765
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHH
Q 010350 279 GIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSW 358 (512)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (512)
.++..+..++.|++++++++ ++. .+.....+++++|+|.+|...+..++..........+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~---~~~-----------------~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~ 227 (382)
T PRK11128 168 VASMLLGQLLRPTIMPQGES---RQQ-----------------ESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGF 227 (382)
T ss_pred HHHHHHHHHccCCCCCcccc---ccc-----------------cccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHH
Confidence 54444333333332111100 000 0001234688999999999888888777777778889
Q ss_pred HHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCChHH
Q 010350 359 LPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWE 438 (512)
Q Consensus 359 ~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (512)
+|.|+.+ .|.+..+.|.+.+...++.++...+.+++.||++++ ..+..+.+..++....... .++....
T Consensus 228 ~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~---------~~l~~~~~~~~~~~~~~~~-~~~~~~~ 296 (382)
T PRK11128 228 SAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR---------DLLLLSAICGVVRWGLMGS-TTALPWL 296 (382)
T ss_pred HHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---------HHHHHHHHHHHHHHHHHHh-hhhHHHH
Confidence 9999965 799999999999988889999999999999998754 2233444444444333332 2333444
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhh-hchhhhhHHhhhhhcccccCc
Q 010350 439 IVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTV-GAVPGIVGVALTGYLLDSTHS 500 (512)
Q Consensus 439 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~lg~~i~p~i~G~l~~~~g~ 500 (512)
++..++.|++.+...+.......+ .+++++++..++.+.. ..+|..+||.++|.+.|..|.
T Consensus 297 ~~~~~l~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~ 358 (382)
T PRK11128 297 IVIQILHCGTFTVCHLAAMRYIAA-RPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA 358 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-CCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 556667777777666666655555 4677788999988744 467779999999999999873
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=247.51 Aligned_cols=390 Identities=17% Similarity=0.187 Sum_probs=300.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 191 (512)
-|.+....++..+...-....++.+.+.++++++.+..+++|+.++....+.+..++.+.+.||+|.|.+.++|.++.++
T Consensus 44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHH
Confidence 34555555566655555566677788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHH
Q 010350 192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV 271 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~ 271 (512)
+.++.++.++-+..++..-++.|+|.+..+.....++..+|+ ++|+.+.|+..++.++|.++-|.+.-++.+.+|||+.
T Consensus 124 g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~ 202 (509)
T KOG2504|consen 124 GLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGA 202 (509)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHH
Confidence 998886555544556667899999999999999999998887 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCC----------------------CCcchhhhhh-hhhhhhhHHhhcC-----C
Q 010350 272 FYIFGLLGIAWFSGFKILQEGETSNGAT----------------------LAPRSNYINM-KKSLSASLEEMGE-----S 323 (512)
Q Consensus 272 f~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~-~~~~~~~~~~~~~-----~ 323 (512)
+++.+.+.+-+++....+.+......+. ...+...... ........++.+. .
T Consensus 203 ~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (509)
T KOG2504|consen 203 LLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSP 282 (509)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccc
Confidence 9999998876666655554422221111 0000000000 0000000000000 0
Q ss_pred CCCccH---HHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHH
Q 010350 324 LKDVPW---KAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLI 400 (512)
Q Consensus 324 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~ 400 (512)
.+.... .++++++.++.+.+...+..++++....++|.|.+ ..+++..+++.+.+..++..++++++.|++.|+..
T Consensus 283 ~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~ 361 (509)
T KOG2504|consen 283 LQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPG 361 (509)
T ss_pred hhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccc
Confidence 111112 58899999999999999999999999999999998 47999999999999999999999999999999976
Q ss_pred HcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhh
Q 010350 401 ATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVG 480 (512)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 480 (512)
.+ +.....++.+..++......... +...++...++.|++.+.+.........+.++.++-..+.|+...+.
T Consensus 362 ~~-------~~~~~~~~ll~~gl~~~~~p~~~-~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~ 433 (509)
T KOG2504|consen 362 IR-------ALVLFLLTLLIAGLARLFLPFAT-TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQ 433 (509)
T ss_pred cc-------hHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHh
Confidence 33 34444555555555543333322 22344555677777777766666667788899999999999999999
Q ss_pred chhhhhHHhhhhhcccccCcceEEEEecCcC
Q 010350 481 AVPGIVGVALTGYLLDSTHSWSVSYQCPPRF 511 (512)
Q Consensus 481 ~lg~~i~p~i~G~l~~~~g~~~~~f~~~~~~ 511 (512)
.++..+||++.|++.|..|+|...|++.++.
T Consensus 434 gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~ 464 (509)
T KOG2504|consen 434 GIGALVGPPIAGLLYDITGNYDHAFYFCGLC 464 (509)
T ss_pred HHHHHcCcccceeeeeccCCeeeehhhcChH
Confidence 9999999999999999999999999988754
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=249.66 Aligned_cols=376 Identities=17% Similarity=0.163 Sum_probs=249.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc-----CCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHH
Q 010350 113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRF-----GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVL 187 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 187 (512)
++.+.++.+..+..+++...++...|.+.+++ +.+..+.+++.+.+.+++.++++++|+++||+|||+++.++.+
T Consensus 15 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~ 94 (502)
T TIGR00887 15 FRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELI 94 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 45666677778888899998998888876542 3556677999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh-----hHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHh
Q 010350 188 IWSLATALLPLLAG-----FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI 262 (512)
Q Consensus 188 ~~~~~~~~~~~~~~-----~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 262 (512)
++.++.++.+...+ ++..++++|++.|++.+...+....+++|++|+++|++++++......+|.++++.++..+
T Consensus 95 ~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~ 174 (502)
T TIGR00887 95 IMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV 174 (502)
T ss_pred HHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888876653322 2578999999999999999999999999999999999999999999999999999888755
Q ss_pred cc-----------------------ccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCc-c--hhhhhhh-h-hhh
Q 010350 263 IE-----------------------NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAP-R--SNYINMK-K-SLS 314 (512)
Q Consensus 263 ~~-----------------------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~-~-~~~ 314 (512)
.. ..+||+.|.+.++.+++.++..+++||+++....+.++ + .+...+. + ...
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~ 254 (502)
T TIGR00887 175 LAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIE 254 (502)
T ss_pred HHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccc
Confidence 32 24799999888887777777777889887642111111 1 1111100 0 000
Q ss_pred hhHHh---hc--CCCCCccHHHHhhc---HhHHH----HHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHH------
Q 010350 315 ASLEE---MG--ESLKDVPWKAIFRS---KAVWA----MIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAW------ 376 (512)
Q Consensus 315 ~~~~~---~~--~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~------ 376 (512)
++.++ .+ ++..+.++++++++ ++.+. .....++....+++...+.|.++++ .|++....+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~~~~ 333 (502)
T TIGR00887 255 AEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNAYEEL 333 (502)
T ss_pred cCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhHHHHH
Confidence 00000 00 00111346677653 22211 2223344455666777889999965 5886543221
Q ss_pred ------HhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccC-C-CChHHHHHHHHHHHH
Q 010350 377 ------VSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDL-G-LPHWEIVGILTAGLA 448 (512)
Q Consensus 377 ------~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~g~~ 448 (512)
...+..++.+++.++.+++.||+||| ....++..+..++..+..... . ..........+....
T Consensus 334 ~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR---------~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 404 (502)
T TIGR00887 334 YKTAVGNLIIALAGTVPGYWVTVFLVDIIGRK---------PIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFF 404 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch---------hHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 22334456677888999999999875 222223333222222221111 0 111111111111111
Q ss_pred HH-HhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhccccc
Q 010350 449 LS-SFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDST 498 (512)
Q Consensus 449 ~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~ 498 (512)
.+ ...+.......+.+|++.|+++.|+.++++.++++++|.+.|++.|..
T Consensus 405 ~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 455 (502)
T TIGR00887 405 ANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHG 455 (502)
T ss_pred HhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccc
Confidence 11 122233334567789999999999999999999999999999999853
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-28 Score=250.52 Aligned_cols=344 Identities=18% Similarity=0.126 Sum_probs=242.9
Q ss_pred hhhhhhhcccCCC---chhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 010350 135 VAIIPMSHRFGWN---SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRV 211 (512)
Q Consensus 135 ~~~~~~~~~~g~s---~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 211 (512)
+..|.+.+|+|++ ..+.+++.+++.+++.++.+++|+++||+|||++++++.++.+++.++.+ ++++++.+++.|+
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~r~ 188 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTA-FSPNYTVFLVFRL 188 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHH
Confidence 5678899999999 89999999999999999999999999999999999999999888887764 6677899999999
Q ss_pred HHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHhhcc
Q 010350 212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE 291 (512)
Q Consensus 212 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 291 (512)
+.|++.+...+...+++.|++|+++|+++.++...+..+|.+++|.+++.+.+ ||+.|++.++..++..+..+++||
T Consensus 189 l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~~~~~e 265 (505)
T TIGR00898 189 LVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWFVPE 265 (505)
T ss_pred HHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999877653 999999999888777766777777
Q ss_pred CCCCCCCCCCcch--hhhhh---hh-------hhhhh-HHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHH
Q 010350 292 GETSNGATLAPRS--NYINM---KK-------SLSAS-LEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSW 358 (512)
Q Consensus 292 ~~~~~~~~~~~~~--~~~~~---~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (512)
+++....+.+.++ +..++ .. ..... .++..+..++..+++++++|.++...+...+..+........
T Consensus 266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (505)
T TIGR00898 266 SPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYG 345 (505)
T ss_pred ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 6542211111111 00000 00 00000 001111112346788999998887766655544443333333
Q ss_pred HHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCC-hH
Q 010350 359 LPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLP-HW 437 (512)
Q Consensus 359 ~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 437 (512)
++.++ +.++.+.. ......++..+++.++.+++.||+++| ....+..++.++++++........ ..
T Consensus 346 ~~~~~-~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr---------~~~~~~~~~~~~~~l~~~~~~~~~~~~ 412 (505)
T TIGR00898 346 LVLDL-GNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRR---------YTMAASLLLAGVALLLLLFVPVDLYFL 412 (505)
T ss_pred Hhccc-cccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHcCCCchHH
Confidence 33333 33455533 333455677888999999999999754 333344444444433333322222 23
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhccc
Q 010350 438 EIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLD 496 (512)
Q Consensus 438 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~ 496 (512)
.....++.+++.+...........+.+|++.|+++.|+.+++..+|++++|.+.+ +.+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~ 470 (505)
T TIGR00898 413 RTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE 470 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH
Confidence 3333344444445455555566677789999999999999999999999999998 443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-27 Score=236.85 Aligned_cols=351 Identities=14% Similarity=0.066 Sum_probs=230.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHH-HHHHhhhhhhhhhhhcCCchHHH-HHHHHHHHHHH
Q 010350 118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGGRKVLQ-TGVLIWSLATA 194 (512)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~ 194 (512)
.+.+..++..+......+.+|. +.+++|.|.+++|++.+...+ ++.++++++++ +||+|||+.++ .+.++.+++..
T Consensus 19 ~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~ 97 (393)
T PRK15011 19 AFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACT 97 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHH
Confidence 3344466667777777788777 678999999999999876544 66666666666 99999998754 45555455555
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccch--hhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHH
Q 010350 195 LLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEER--SRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF 272 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f 272 (512)
+.+ .+++++.+++.+.+.|...+...+...+++.++.++++| +...++.+.+.++|.+++|++++++.+++|||+.|
T Consensus 98 ~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f 176 (393)
T PRK15011 98 LFA-WNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMY 176 (393)
T ss_pred HHH-HhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHH
Confidence 543 556667766665555555567778888888887776555 34557888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-hhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHH
Q 010350 273 YIFGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG 351 (512)
Q Consensus 273 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (512)
++.++..++..+... ++|+++++++.. +++ . +.. ++ +++..+......++....
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------~----~~~-----~~--~~~~~~~~~~~~~~~~~~ 231 (393)
T PRK15011 177 LSAAVAFIVCGVMVWLFLPSMRKELPLA--TGT------------L----EAP-----RR--NRRDTLLLFVICTLMWGT 231 (393)
T ss_pred HHHHHHHHHHHHHHHhhcCccCCCCccc--ccc------------c----ccc-----cc--ccccHHHHHHHHHHHHHH
Confidence 998887766554433 455543221110 000 0 000 00 112223333333444455
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhcc
Q 010350 352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID 431 (512)
Q Consensus 352 ~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (512)
.+....++|.|+++.+|+++.+.+.+.+...++.+++.++.|+++||+++| +.. ..+.....+.+.....
T Consensus 232 ~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~--------~~~-~~~~~~~~~~~~~~~~- 301 (393)
T PRK15011 232 NSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKR--------FLM-RVAAVAGVCFYAGMLM- 301 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--------HHH-HHHHHHHHHHHHHHHH-
Confidence 556677899999888899999999888887888888999999999999865 222 2222222222222221
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEEe
Q 010350 432 LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQC 507 (512)
Q Consensus 432 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~~ 507 (512)
..+....+...++.++..+...........+ ..|++++++.++++...++|..++|.++|.+.|..| |+..|++
T Consensus 302 ~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~-~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~ 375 (393)
T PRK15011 302 AHSPAILLGLQLLNAIYIGILGGIGMLYFQD-LMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWF 375 (393)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHH
Confidence 2222333333333334333333333333334 445679999999999999999999999999999876 7766554
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-29 Score=257.15 Aligned_cols=286 Identities=17% Similarity=0.183 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHH
Q 010350 117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL 196 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 196 (512)
+.+++.++...+.....+..++.++++|+++..+.|++.+.+.+++.++.++.+++.||+|||+++.++.++++++.++.
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 44555666777778888889999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHhh-------------------------------------------------h-hHHHHHHHHHHHHhhcccchhhHHH
Q 010350 197 PLLA-------------------------------------------------G-FMPGLVLSRVLVGIGEGVSPSAATD 226 (512)
Q Consensus 197 ~~~~-------------------------------------------------~-~~~~~~~~r~l~G~~~~~~~~~~~~ 226 (512)
+... + .+..++++|+++|+|.+..++...+
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~ 195 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS 195 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence 5321 0 2456789999999999999999999
Q ss_pred HHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcccc----------------------CchHHHHHHHHHHHHHHH
Q 010350 227 LIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL----------------------GWESVFYIFGLLGIAWFS 284 (512)
Q Consensus 227 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----------------------gw~~~f~~~~~~~~~~~~ 284 (512)
++.|++|+++|+++++++..+..+|.++|+++++++.+.+ +|+..|++.+++.++..+
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v 275 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI 275 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988643 267778888888777666
Q ss_pred HHHhhccCCCCCCCCCC-cchhhhhhhhhhhhhHHhhcCCCC--CccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHH
Q 010350 285 GFKILQEGETSNGATLA-PRSNYINMKKSLSASLEEMGESLK--DVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPT 361 (512)
Q Consensus 285 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 361 (512)
.++++|++.++.....+ +.++....++.......+..+..+ ...++++++||.++...+..++.....+++.+|+|.
T Consensus 276 ~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~ 355 (633)
T TIGR00805 276 PFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPK 355 (633)
T ss_pred HHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677765443211110 000000000000000000000000 123578999999999999999999999999999999
Q ss_pred HHHHhcCCChhhhHHHhhhhHH-HHHHHHHHHHHHHhHHHHc
Q 010350 362 YFSEELSLNLTEAAWVSILPPL-ASVLVTSIAAQFADNLIAT 402 (512)
Q Consensus 362 ~l~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~~~ 402 (512)
|+++.+|+++.+++++..+..+ +.+++.+++|++.||++.+
T Consensus 356 yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~ 397 (633)
T TIGR00805 356 YLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN 397 (633)
T ss_pred HHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence 9999999999999998887776 5688999999999998743
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=237.72 Aligned_cols=360 Identities=13% Similarity=0.055 Sum_probs=245.9
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc-----CCch-HHHHHHHHHHHH
Q 010350 119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-----GGRK-VLQTGVLIWSLA 192 (512)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~-~~~~~~~~~~~~ 192 (512)
+...++.+++........+|.+.++.|+|.+++|++..+... .+.++++|+++||+ |||| +++++.++.+++
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 4 MLLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 345566778888888999999999999999999999777665 58999999999999 8875 677777777766
Q ss_pred HHHHHHhh--hhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccc-cCch
Q 010350 193 TALLPLLA--GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LGWE 269 (512)
Q Consensus 193 ~~~~~~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~gw~ 269 (512)
..+..... .+++.+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+. .|||
T Consensus 82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~ 161 (402)
T PRK11902 82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG 161 (402)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence 66654432 34566777878888888999999999999999999999999999999999999999999999885 5999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhH
Q 010350 270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS 349 (512)
Q Consensus 270 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (512)
..|++.+++.++..+..++.+|+++.++++ ++.+ +. ....+++++|||.++...+..++..
T Consensus 162 ~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~--~~~~-----~~------------~~~~~~~l~~~~~~~~~l~~~~l~~ 222 (402)
T PRK11902 162 NTYLLMAGLMLAGALTTLWAPEPEVPARPP--RSLG-----EA------------VVGPLRDFFSRRGAWALLLLIVLYK 222 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccc--chhH-----HH------------HHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 999998888766655555666554321110 0000 00 0113467889999888777766666
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhH-HHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHH--HH
Q 010350 350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPP-LASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVC--MT 426 (512)
Q Consensus 350 ~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 426 (512)
........+.+.++.+.+|+++.+.+++....+ ++.+++..+++++.||++++ +.......+..... +.
T Consensus 223 ~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~--------~~l~~~~~~~~l~~l~~~ 294 (402)
T PRK11902 223 LGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLY--------RSLMLFGVLQAVSNLGYW 294 (402)
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHH
Confidence 554444455566676778999999998876554 46889999999999999864 22222222111111 11
Q ss_pred HhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEE
Q 010350 427 LSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQ 506 (512)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~ 506 (512)
.......+....+....+..+..+...............++..++..++.+...+++..+++.++|.+.|..| |+..|.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~ 373 (402)
T PRK11902 295 VLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYG-WPGFYL 373 (402)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHH
Confidence 1122122222222222222222222222222222233334444555677777777888877889999999998 766555
Q ss_pred ec
Q 010350 507 CP 508 (512)
Q Consensus 507 ~~ 508 (512)
+.
T Consensus 374 ~~ 375 (402)
T PRK11902 374 MT 375 (402)
T ss_pred HH
Confidence 43
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=238.29 Aligned_cols=368 Identities=12% Similarity=0.029 Sum_probs=253.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhh-hcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHH
Q 010350 115 LIGTTSLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT 193 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 193 (512)
.++.+...+++.+.+...+.+.+|.+ .+++|.|..+.+++.+++.+++.++++++|+++||+|||+.++.+.+..+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~ 82 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLF 82 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 34456666777788888888888874 56789999999999999999999999999999999999999988766655443
Q ss_pred HHHHHh-------hhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcccc
Q 010350 194 ALLPLL-------AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL 266 (512)
Q Consensus 194 ~~~~~~-------~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 266 (512)
...... .+.+..+++.+++.|++.+...+....+..+..+ +++..++......++|.+++|++++.+.+ .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~ 159 (396)
T TIGR00882 83 APFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS-I 159 (396)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc-c
Confidence 322111 1223345677889999988888888877777533 34567788888889999999999998865 5
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHH
Q 010350 267 GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346 (512)
Q Consensus 267 gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (512)
+|++.|++.+++.++..+..+..++++++++.. .+..+ ..++..+..+.++++|||.++...+..+
T Consensus 160 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 225 (396)
T TIGR00882 160 DPQIVFWLGSGFALILMLLLMFAKPKAPSSATV-ANALG-------------ANASAFSLKLALELFRQRKFWMFVLYVV 225 (396)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCCCCchhhhh-hcccc-------------cccCCCCHHHHHHHHcCCcHHHHHHHHH
Confidence 999999998888777655554443332211100 00000 0000111123568889999887777766
Q ss_pred HhHHHHHHHHHHHHHHHHHhc---CCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHH
Q 010350 347 CGSWGHYTCLSWLPTYFSEEL---SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAV 423 (512)
Q Consensus 347 ~~~~~~~~~~~~~p~~l~~~~---g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (512)
+....+.....+.|.|+.+.+ +.+....|.+.+...+...++....+++.||+++|+ ...++.++.++
T Consensus 226 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~---------~l~~~~~l~~l 296 (396)
T TIGR00882 226 GVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN---------ALLIAGTIMSV 296 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------hHHHHHHHHHH
Confidence 666666666678888887764 455667788888888999999999999999998652 22333333333
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHH-HHhhhchhhhhHHhhhhhcccccCcce
Q 010350 424 CMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGI-TNTVGAVPGIVGVALTGYLLDSTHSWS 502 (512)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~lg~~i~p~i~G~l~~~~g~~~ 502 (512)
....... ..+..+.+...++.+++.............+..+++.++++.+. .+....+|++++|.++|++.|..| |+
T Consensus 297 ~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~ 374 (396)
T TIGR00882 297 RIIGSSF-ATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQ 374 (396)
T ss_pred HHHHHHh-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cH
Confidence 3333222 23344444444555554433333333344455677777777766 578889999999999999999987 87
Q ss_pred EEEEecCc
Q 010350 503 VSYQCPPR 510 (512)
Q Consensus 503 ~~f~~~~~ 510 (512)
..|++.++
T Consensus 375 ~~f~~~~~ 382 (396)
T TIGR00882 375 GAYLVLGC 382 (396)
T ss_pred HHHHHHHH
Confidence 77766553
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=268.31 Aligned_cols=365 Identities=15% Similarity=0.080 Sum_probs=259.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhh-hhhcccCCCc-hhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHH--HHHHHHHH
Q 010350 117 GTTSLAFVICNMDKVNLSVAII-PMSHRFGWNS-SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT--GVLIWSLA 192 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~-~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~--~~~~~~~~ 192 (512)
...++..+..++....+..... .+..+.+.+. ...++..+++.+++.++++++|+++||+|||+++.. ...+....
T Consensus 18 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~ 97 (1140)
T PRK06814 18 WTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAA 97 (1140)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHH
Confidence 3334444443444444333333 3444444433 457888899999999999999999999999997643 22222222
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHH
Q 010350 193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF 272 (512)
Q Consensus 193 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f 272 (512)
..+.++..++++.++++|+++|++.+...|...+++.+++++++|++++|+..++..+|.++||+++|++.+..+|++.|
T Consensus 98 ~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~ 177 (1140)
T PRK06814 98 LAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV 177 (1140)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 22333344678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHH
Q 010350 273 YIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH 352 (512)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (512)
+..+++.++.+++.++++++++.+....... ... + +. ...++.+.+++.+|...+..++..+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~----~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1140)
T PRK06814 178 ALLMGIAVLGWLASLFIPKTGNAAPDLKIDR-NII---R----ST--------ITLLKYAKADKRIWLAILGISWFWLVG 241 (1140)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCCeecc-chH---H----HH--------HHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 6655555555555566665543221111100 000 0 00 013567889999999988888888888
Q ss_pred HHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhh---
Q 010350 353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS--- 429 (512)
Q Consensus 353 ~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 429 (512)
..+..++|.|+++.+|.++...|++.+...++.+++.++.+++.++...++ ......++.....+.+..
T Consensus 242 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~ 313 (1140)
T PRK06814 242 AVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLL--------YVPIGALLMGLFGLDLAFASS 313 (1140)
T ss_pred HHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeee--------eehHHHHHHHHHHHHHHhccc
Confidence 888899999999989999999999999999999999999999987654331 111111111111111111
Q ss_pred ---------------ccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhc
Q 010350 430 ---------------IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYL 494 (512)
Q Consensus 430 ---------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l 494 (512)
....+.+..++..++.|++.+...+.....+.+..|++++|+++|+.+++..+|..+++.++|.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l 393 (1140)
T PRK06814 314 SVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALL 393 (1140)
T ss_pred ccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 00123344455566777777777777777888889999999999999999999999999999999
Q ss_pred ccccCcceEEE
Q 010350 495 LDSTHSWSVSY 505 (512)
Q Consensus 495 ~~~~g~~~~~f 505 (512)
.+...++...+
T Consensus 394 ~~~~~~~~~~~ 404 (1140)
T PRK06814 394 QALGFSIPWII 404 (1140)
T ss_pred HHhccCHHHHH
Confidence 86544454443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-27 Score=216.34 Aligned_cols=342 Identities=22% Similarity=0.259 Sum_probs=273.8
Q ss_pred HhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010350 128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV 207 (512)
Q Consensus 128 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (512)
-..+.+++.++.+.+++|+|.+++|++.++..+...++.++..++..|+|..+.+..++++.+++.++-... +...++
T Consensus 26 ~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~--~~~~L~ 103 (395)
T COG2807 26 PAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG--GLPLLF 103 (395)
T ss_pred hhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--cHHHHH
Confidence 566778899999999999999999999999999999999999999999999999999999999998877543 447899
Q ss_pred HHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcccc-CchHHHHHHHHHHHHHHHHH
Q 010350 208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYIFGLLGIAWFSGF 286 (512)
Q Consensus 208 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-gw~~~f~~~~~~~~~~~~~~ 286 (512)
.+-.+.|.+.+......+..+-+.|| ++-+..+|+|.....+|+++++.+...+.++. |||....+-++.+++.++.+
T Consensus 104 ~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~W 182 (395)
T COG2807 104 LGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIW 182 (395)
T ss_pred HHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 78899999999999999999999999999887 79999999888887776665
Q ss_pred HhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 010350 287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE 366 (512)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~ 366 (512)
+.-. .+++ ...... +..+-..++|||..|.+.+.+.+++..+|....|+|.++.|.
T Consensus 183 lPq~-~r~~-~~~~~~----------------------~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~ 238 (395)
T COG2807 183 LPQA-LREQ-AASIAT----------------------KLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDR 238 (395)
T ss_pred hhhc-cccc-cccccc----------------------ccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence 4332 1111 100000 011114688999999999999999999999999999999885
Q ss_pred cCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCChHHHHHHHHHH
Q 010350 367 LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAG 446 (512)
Q Consensus 367 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 446 (512)
|+|+.++|.+.+...+..++..+....+.+|..++ | ...+....+..+...-..+.+.+..+.. .+++|
T Consensus 239 -G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~-------r-~~~~~~~~~~l~G~~G~~~~P~~~~~lw--~~llG 307 (395)
T COG2807 239 -GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQ-------R-PLVVLALLLMLVGLVGLLLAPGQLPILW--ALLLG 307 (395)
T ss_pred -CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccc-------c-hHHHHHHHHHHHHHHHHHHhhhhHHHHH--HHHHh
Confidence 99999999999999999999999999999996554 2 2222332322222222222222222222 46778
Q ss_pred HHHHHhhhhhhhhHh-hhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEEe
Q 010350 447 LALSSFALSGLYCTH-QDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQC 507 (512)
Q Consensus 447 ~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~~ 507 (512)
++.+..++.....+. +..+++..+.-.|+.+.++++-...||.+.|++.|..|+|+..+..
T Consensus 308 ~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~ 369 (395)
T COG2807 308 LGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVL 369 (395)
T ss_pred CccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHH
Confidence 877766666665544 4456788888999999999999999999999999999999876543
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=240.36 Aligned_cols=365 Identities=12% Similarity=0.032 Sum_probs=238.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHH
Q 010350 117 GTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL 195 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 195 (512)
..+.+.+++.......+.+++|. +.+++|+|..++|++.+++.+++.++++++|+++||+|||++++++..+.+++...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~ 92 (420)
T PRK09528 13 WIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGP 92 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 34445555666666677777776 45569999999999999999999999999999999999999998876665544322
Q ss_pred HHH--hhh-----hHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCc
Q 010350 196 LPL--LAG-----FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW 268 (512)
Q Consensus 196 ~~~--~~~-----~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw 268 (512)
... ..+ .+...++.+++.|.+.....+....+..+ . .++++..+|.......+|.+++|++++.+.+ .+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~ 169 (420)
T PRK09528 93 FFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INP 169 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCc
Confidence 111 111 11112333444444444443444343322 2 2467788899999999999999999999886 489
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHh
Q 010350 269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCG 348 (512)
Q Consensus 269 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (512)
++.|++.+++++++.+..++.+++++++....+++++ + ++.......++.+|||.+|...+..++.
T Consensus 170 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---------~~~~~~~~~~~~l~~~~~~~l~l~~~~~ 235 (420)
T PRK09528 170 QINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGA-----N---------ASAVSLKDALALLKLPKFWFLVLYVIGV 235 (420)
T ss_pred hHhHHHHHHHHHHHHHHHhcccccccchhhhccchhc-----c---------cccccHHHHHHHccCCCeEeehHHHHHH
Confidence 9999998887776665555544433222110000000 0 0000011235677888887766655555
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHH
Q 010350 349 SWGHYTCLSWLPTYFSEEL---SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCM 425 (512)
Q Consensus 349 ~~~~~~~~~~~p~~l~~~~---g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (512)
.........++|.|+.+.+ +.+..+.|.+.+...++.+++.++.|++.||+++|+ . ...+.++..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~--------~-~~~~~~l~~~~~ 306 (420)
T PRK09528 236 ACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKN--------A-LLLAGTIMAVRI 306 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch--------h-hHHHHHHHHHHH
Confidence 5555556667888876543 456677788889899999999999999999998752 2 223333333333
Q ss_pred HHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHH-HHhhhchhhhhHHhhhhhcccccCcceEE
Q 010350 426 TLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGI-TNTVGAVPGIVGVALTGYLLDSTHSWSVS 504 (512)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~lg~~i~p~i~G~l~~~~g~~~~~ 504 (512)
.+... ..+..+.+...++.++..+...........+..|++.+++..+. .++...+|.+++|.+.|++.|..| |+..
T Consensus 307 ~l~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~ 384 (420)
T PRK09528 307 IGSGF-ATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGT 384 (420)
T ss_pred HHHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHH
Confidence 33332 22344444445555555555555555566677888888888766 677889999999999999999988 8777
Q ss_pred EEecC
Q 010350 505 YQCPP 509 (512)
Q Consensus 505 f~~~~ 509 (512)
|.+.+
T Consensus 385 f~~~~ 389 (420)
T PRK09528 385 YLILG 389 (420)
T ss_pred HHHHH
Confidence 76543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-26 Score=214.64 Aligned_cols=353 Identities=17% Similarity=0.143 Sum_probs=285.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT 193 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 193 (512)
..++.+...+++.++......+.+|.+++.|+++..+++++...++.+|.++.++.|.+.+|+|+|+-++.++.++++++
T Consensus 13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~ 92 (422)
T COG0738 13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA 92 (422)
T ss_pred eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34556666677788888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH--HhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccc------
Q 010350 194 ALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN------ 265 (512)
Q Consensus 194 ~~~~--~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------ 265 (512)
.++. ....++..+++..|+.|.|.+...+.++.+++.+.++++....+.+.+..+.+|++++|++++.+..+
T Consensus 93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~ 172 (422)
T COG0738 93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM 172 (422)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence 8773 24456788999999999999999999999999999998999999999999999999999999988762
Q ss_pred -------------cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHH
Q 010350 266 -------------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAI 332 (512)
Q Consensus 266 -------------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (512)
..|+++|...+...+++.+.....+.|+.+.......+ .++....++
T Consensus 173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~--------------------~~~~~~~~l 232 (422)
T COG0738 173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGA--------------------SGSAGLSSL 232 (422)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccc--------------------cccchHHHH
Confidence 24888888888777776666555443332221111000 001134788
Q ss_pred hhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHH
Q 010350 333 FRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKI 412 (512)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 412 (512)
+++|.++...+..|++-........|++.|+.+..|.+..+++...+....+.++|++++.++.+|+... |.
T Consensus 233 ~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~--------k~ 304 (422)
T COG0738 233 FQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE--------KY 304 (422)
T ss_pred HhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--------HH
Confidence 9999999999999999999999999999999987899999999999999999999999999999998753 34
Q ss_pred HHHHHhHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhh
Q 010350 413 CQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTG 492 (512)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G 492 (512)
....+.+...+++..... +..+.+...++.|++.+..+|.+.....+..+ + .....|..-.+.-+|+++.|++.|
T Consensus 305 Laf~a~~~ill~~~~~l~---~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~-~ts~~s~~l~maivGGAiiP~l~G 379 (422)
T COG0738 305 LAFYALIAILLLLAVALI---GGVVALYALFLIGLFNSIMFPTIFSLALKNLG-E-HTSVGSGLLVMAIVGGAIIPPLQG 379 (422)
T ss_pred HHHHHHHHHHHHHHHHHh---cChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-c-cccccceeeeeheecchHHHHHHH
Confidence 333333333333333332 23666777788899999899988888888777 3 344455556677789999999999
Q ss_pred hcccccC
Q 010350 493 YLLDSTH 499 (512)
Q Consensus 493 ~l~~~~g 499 (512)
++.|..|
T Consensus 380 ~i~d~~g 386 (422)
T COG0738 380 VIADMFG 386 (422)
T ss_pred HHHHhhh
Confidence 9999988
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-26 Score=225.01 Aligned_cols=361 Identities=10% Similarity=0.040 Sum_probs=252.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHH--HHHHHHHHHHhhhhh-hhhhhhcCCchHHHHHHHHH-HH
Q 010350 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLV--QSSFFWGYALSQLPG-GWLAKIFGGRKVLQTGVLIW-SL 191 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~--~s~~~~~~~~~~~~~-g~l~dr~g~r~~~~~~~~~~-~~ 191 (512)
+..+...++.+++......+.+|.+.++.|.|.+++|++ .+++.+...+.++++ ++..||+||||..++...+. ++
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~ 82 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA 82 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence 456667788889999999999999999999999999997 466777777788888 44789999999875554332 21
Q ss_pred HHHHHHHh--h-hhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCc
Q 010350 192 ATALLPLL--A-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW 268 (512)
Q Consensus 192 ~~~~~~~~--~-~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw 268 (512)
+....+.. . .....++...++.+++.+...+...++..|..++++++...+....+..+|.++|+...+++.+++||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw 162 (390)
T TIGR02718 83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ 162 (390)
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 12222111 1 21234455556677777888888888888988888889888889888899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHh
Q 010350 269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCG 348 (512)
Q Consensus 269 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (512)
|..|++.+++.++..+..++++++++++.+. ++ + ...++++++|+|.++...+..++.
T Consensus 163 ~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~--~~-~-------------------~~~~~~~~l~~~~~~~~~~~~~l~ 220 (390)
T TIGR02718 163 RPAFLLVACVPLASLVCVLWLKDRAVASPEA--PL-A-------------------RRASLFRFFRRPLAWSLLALALLS 220 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcCcccc--ch-h-------------------hHHHHHHHHcCcCHHHHHHHHHHH
Confidence 9999999988776665555555433211100 00 0 011246788999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHH-HHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHH-HHHHH
Q 010350 349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPL-ASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSP-AVCMT 426 (512)
Q Consensus 349 ~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 426 (512)
..+......+.+.|+++ .|+++.+.|.+....++ ..+++..+.|++.||++++ +.... +.+.. ...+.
T Consensus 221 ~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~--------~~l~~-~~~~~~~~~~~ 290 (390)
T TIGR02718 221 AMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW--------RTFIL-GVGLAGSLALL 290 (390)
T ss_pred HHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH--------HHHHH-HHHHHHHHHHH
Confidence 88888888899999987 69999999998887765 5567788999999999864 22222 22212 11111
Q ss_pred Hhhcc---CCCChHH-HHHHHHHHHHHHHhhhhhhhhHhhhcCc-chhHHHHHHHHhhhchhhhhHHhhhhhcccccCcc
Q 010350 427 LSSID---LGLPHWE-IVGILTAGLALSSFALSGLYCTHQDISP-EYASILLGITNTVGAVPGIVGVALTGYLLDSTHSW 501 (512)
Q Consensus 427 ~~~~~---~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~ 501 (512)
..... ....... .....+.++..+...........+..++ +++++.+++.+++.++|..++|.++|.++|..| |
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~ 369 (390)
T TIGR02718 291 WFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-Y 369 (390)
T ss_pred HHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c
Confidence 11110 1112222 2222222333444444444454555665 889999999999999999999999999999887 7
Q ss_pred eEEEEecC
Q 010350 502 SVSYQCPP 509 (512)
Q Consensus 502 ~~~f~~~~ 509 (512)
+..|.+.+
T Consensus 370 ~~~f~~~~ 377 (390)
T TIGR02718 370 AGGFLSGT 377 (390)
T ss_pred HHHHHHHH
Confidence 66655443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-26 Score=229.28 Aligned_cols=364 Identities=17% Similarity=0.137 Sum_probs=276.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT 193 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 193 (512)
+.+..+.++.++..++..+....++-+..+..-|+..++++.++..+...+..+++|.++||+.||++++.+.++.++..
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~ 89 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVA 89 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 55556777777888888888888888777777899999999999999999999999999999999999999988776655
Q ss_pred HHHHHhh----hhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCch
Q 010350 194 ALLPLLA----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE 269 (512)
Q Consensus 194 ~~~~~~~----~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~ 269 (512)
++++... .+.+.+++..++.|++.+...|...+++.+..|+++...++++.....+++.++||.++|.++..+|-.
T Consensus 90 ~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~ 169 (524)
T PF05977_consen 90 LLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAA 169 (524)
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 4443332 345788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhH
Q 010350 270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS 349 (512)
Q Consensus 270 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (512)
++|.+.++..++.+......+++.+.+.. ++++.. + + -...++.+.++|.+....+..++..
T Consensus 170 ~~f~inalsfl~~i~~l~~~~~~~~~~~~---~~e~~~---~----~--------l~~G~ryv~~~~~l~~~l~~~~~~~ 231 (524)
T PF05977_consen 170 AAFLINALSFLISILALLRWKPPPPPSSL---PRERFF---S----A--------LREGLRYVRSSPPLRSVLLRSFLFN 231 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHcccccccccc---chhhhh---h----h--------HHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999887766655544444432221111 111100 0 0 0113455666777776666666666
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhh
Q 010350 350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS 429 (512)
Q Consensus 350 ~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (512)
+........+|.+.++.+|.++...|++.+..++++++|.++.+++.+|++.+ +. +..+.+..+++++...
T Consensus 232 l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~--------~l-v~~~~~~~a~~~~~la 302 (524)
T PF05977_consen 232 LFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSR--------RL-VLLASLLFALALLLLA 302 (524)
T ss_pred HhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc--------hh-hHHHHHHHHHHHHHHh
Confidence 66666777899999999999999999999999999999999999888876542 22 2233333344443333
Q ss_pred ccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEE
Q 010350 430 IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQ 506 (512)
Q Consensus 430 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~ 506 (512)
+. .+.+...+.+++.|++...............+|++.+|+++++++++...+..+|..+.|.+.|..| .+..+.
T Consensus 303 l~-~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~ 377 (524)
T PF05977_consen 303 LS-PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALL 377 (524)
T ss_pred cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHH
Confidence 32 2233344555666776666666666777788999999999999999999999999999999999987 443443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=220.46 Aligned_cols=320 Identities=12% Similarity=0.057 Sum_probs=231.1
Q ss_pred hhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc-----CCchHH-HHHHHHHHHHHHHHHHhh--hh
Q 010350 131 VNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-----GGRKVL-QTGVLIWSLATALLPLLA--GF 202 (512)
Q Consensus 131 ~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~~-~~~~~~~~~~~~~~~~~~--~~ 202 (512)
..+++.+|.+.+++|+|.+++|+..+. .+...+ .+++|+++||+ ||||.+ +.+.++.++...+.++.. .+
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~ 82 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD 82 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 456778899999999999999999765 455554 99999999998 898874 566666666655554332 33
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccC--------chHHHHH
Q 010350 203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG--------WESVFYI 274 (512)
Q Consensus 203 ~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--------w~~~f~~ 274 (512)
.+.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.++.| ||+.|++
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i 162 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW 162 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence 45677777888888888899999999999999999999999999999999999999999998888 9999999
Q ss_pred HHHHHHHHHHHHHh-hccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHh---HHHHHHHHHHhHH
Q 010350 275 FGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKA---VWAMIYAHFCGSW 350 (512)
Q Consensus 275 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 350 (512)
.++..++..+..++ .+|+++.+.. + ++.. +. ....+++++++|. ++...+..++...
T Consensus 163 ~ai~~l~~~~~~~~~~~e~~~~~~~--~-~~~~----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (356)
T TIGR00901 163 TALLILPGLLVTLFLAKEPQEDASV--P-KPLT----QA------------VLKPIREFFQRKNMIQALLLLLLIVLYKL 223 (356)
T ss_pred HHHHHHHHHHHHHHhccCCCccccc--c-hhHH----HH------------HHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 88877665554443 3443221100 0 0000 00 0113456677765 7777777777788
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhHHHhhhhH-HHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHh-
Q 010350 351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPP-LASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLS- 428 (512)
Q Consensus 351 ~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 428 (512)
..+....++|.|+++ +|++..+.+.+....+ +..+++.++++++.||+++| +.. ..+.++.++...+.
T Consensus 224 ~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~--------~~l-~~~~~~~~~~~~~~~ 293 (356)
T TIGR00901 224 GDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL--------YAL-LLFGIVQALTNAGFV 293 (356)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH--------HHH-HHHHHHHHHHHHHHH
Confidence 888889999999987 7999999998877665 57788999999999999864 222 22222222222221
Q ss_pred hcc-CC-------CC-hHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhc
Q 010350 429 SID-LG-------LP-HWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGA 481 (512)
Q Consensus 429 ~~~-~~-------~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 481 (512)
... .. .. .......++.+++.+...+.......+..|++++|+.+|+.++..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 294 WLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 111 11 12 2234445566777777888888888899999999999999988765
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-26 Score=228.38 Aligned_cols=355 Identities=11% Similarity=0.053 Sum_probs=242.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCC-chHHHHHHHHHHHHHHH
Q 010350 118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG-RKVLQTGVLIWSLATAL 195 (512)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~~~ 195 (512)
-+++.+++.+.....+.+.++. +.+++|+|..++|++.+++.++..++++++|+++||+|| |+++.++.++.+++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~ 85 (418)
T TIGR00889 6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFF 85 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3555666667777777666555 667899999999999999999999999999999999965 77888887777666655
Q ss_pred HHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhh--------cCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccC
Q 010350 196 LPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARS--------IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG 267 (512)
Q Consensus 196 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~--------~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 267 (512)
.. ..++++.+++.|++.|++.+...+...++..+. .....|.+..| .+|.+++|++++.+....+
T Consensus 86 ~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~ 158 (418)
T TIGR00889 86 AA-QVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELS 158 (418)
T ss_pred HH-HhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccch
Confidence 54 556678888999999998887777666654322 22223333333 5788999999988743334
Q ss_pred chHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHH
Q 010350 268 WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFC 347 (512)
Q Consensus 268 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (512)
|+ .|++.+++.++..+..+++||+++.+++++ ...+ + . .....++++|+|.++.+.+..++
T Consensus 159 ~~-~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~-----~-----------~-~~~~~~~~~k~~~~~~~~~~~~~ 219 (418)
T TIGR00889 159 NI-QLYITAGSSALLGVFALTLPDIPVAKSTAK-MSIK-----V-----------M-LGLDAFILFKNKRMAIFFFFSML 219 (418)
T ss_pred hH-HHHHHHHHHHHHHHHHhcCCCCCCCccccc-cCHH-----H-----------H-hhhhHHHHhcCCCeeeHHHHHHH
Confidence 55 455666655555555555665432111100 0000 0 0 01123567889998888887777
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCh--------hhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhH
Q 010350 348 GSWGHYTCLSWLPTYFSEELSLNL--------TEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFL 419 (512)
Q Consensus 348 ~~~~~~~~~~~~p~~l~~~~g~s~--------~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 419 (512)
..........+.|.|+++ .|.++ ...+...+...+..+++.+..+++.||+++| ..+..+.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r---------~~l~~~~~ 289 (418)
T TIGR00889 220 LGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK---------KVMLLSLV 289 (418)
T ss_pred HHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHHHH
Confidence 776666677888989876 46443 5668888999999999999999999999754 33344444
Q ss_pred HHHHHHHHhhccCCCC---hHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHH-hhhchhhhhHHhhhhhcc
Q 010350 420 SPAVCMTLSSIDLGLP---HWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITN-TVGAVPGIVGVALTGYLL 495 (512)
Q Consensus 420 ~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~lg~~i~p~i~G~l~ 495 (512)
...+...+......+. ...++..++.+++.+...+.....+.+..|+++|++++|+.+ +...+|.++||.++|++.
T Consensus 290 ~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~ 369 (418)
T TIGR00889 290 AWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMV 369 (418)
T ss_pred HHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4444433333221111 223344566666666666666677778899999999999997 567899999999999999
Q ss_pred cccCc-----ceEEEEec
Q 010350 496 DSTHS-----WSVSYQCP 508 (512)
Q Consensus 496 ~~~g~-----~~~~f~~~ 508 (512)
|..|+ |+..|++.
T Consensus 370 ~~~g~~~~~~~~~~f~~~ 387 (418)
T TIGR00889 370 EKMFAYGTFDWQTMWLFF 387 (418)
T ss_pred HHhccccCCchHHHHHHH
Confidence 98653 66665544
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=258.56 Aligned_cols=355 Identities=16% Similarity=0.111 Sum_probs=250.3
Q ss_pred HHHHHHHHHHH-hhhhhhhhhhhhhcccCCCc--hhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHH
Q 010350 118 TTSLAFVICNM-DKVNLSVAIIPMSHRFGWNS--SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA 194 (512)
Q Consensus 118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 194 (512)
.+++..++..+ +........+.+..+++.+. ...+++.+++.+++.++++++|+++||+|||++++++.++..+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~ 92 (1146)
T PRK08633 13 PLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTL 92 (1146)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHH
Confidence 33344444333 33334444555656666654 4478999999999999999999999999999999988766555444
Q ss_pred HHH--HhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccc-------
Q 010350 195 LLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN------- 265 (512)
Q Consensus 195 ~~~--~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------- 265 (512)
+.. ...++++.++++|++.|++.+...+...++++|++++++|++++|+...+..+|.++|+++++++.+.
T Consensus 93 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~ 172 (1146)
T PRK08633 93 LIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPS 172 (1146)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 332 23456789999999999999999999999999999999999999999999999999999999999875
Q ss_pred -c-CchHHHHHHHHHHH-HHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHH
Q 010350 266 -L-GWESVFYIFGLLGI-AWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMI 342 (512)
Q Consensus 266 -~-gw~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (512)
+ +|+|.+.+.++... +.++..+.+++.++...... ++...... + + ....++.+++++.++...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-------~-----~~~~~~~l~~~~~~~~~~ 238 (1146)
T PRK08633 173 EILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVF-DKKKYLFP-K-------L-----LWRNLKLLRSDRVLWLAI 238 (1146)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccc-cccccccH-H-------H-----HHHHHHHHhcCcHHHHHH
Confidence 2 34555544443332 33333444554432221110 00000000 0 0 011346778889888888
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcCCChh-hhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHH
Q 010350 343 YAHFCGSWGHYTCLSWLPTYFSEELSLNLT-EAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSP 421 (512)
Q Consensus 343 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~-~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 421 (512)
+..++..+..+....++|.|+++.+|++.. ..+++.+...++.+++.++.+++.||+++++ ...++.+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~---------~~~~~~~~~ 309 (1146)
T PRK08633 239 IGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELG---------LVPLGALGL 309 (1146)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEcc---------chhHHHHHH
Confidence 777777777778888999999988999998 9999999999999999999999999986532 122222333
Q ss_pred HHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhccc
Q 010350 422 AVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLD 496 (512)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~ 496 (512)
++++++.... .+....++..++.|++.+...+.......+..|++++|+++|+.+++..+|.++++.+++.+..
T Consensus 310 ~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 310 ALSLFLLPTA-PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred HHHHHHHHHh-hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332222 2333444556667777776666666777777899999999999999999999888887776654
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-27 Score=218.40 Aligned_cols=331 Identities=15% Similarity=0.123 Sum_probs=257.9
Q ss_pred hcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccc
Q 010350 141 SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVS 220 (512)
Q Consensus 141 ~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~ 220 (512)
.++.+-+.+++|++.+.+.+...+..++.|.+.||+|+|..+++|+.++....++++ +.+++++++++|.++|+|.+..
T Consensus 98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFa-fg~sy~~l~vAR~LQgvgsA~~ 176 (464)
T KOG3764|consen 98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFA-FGNSYPMLFVARSLQGVGSAFA 176 (464)
T ss_pred ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHH-HcchhHHHHHHHHHhhhhHHHH
Confidence 345567889999999999999999999999999999999999999999999998885 6777899999999999999999
Q ss_pred hhhHHHHHHhhcCcc-chhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 010350 221 PSAATDLIARSIPLE-ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGAT 299 (512)
Q Consensus 221 ~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (512)
.....++++|.+|++ +|++++|+...+.++|..+||++||.+++..|.+.+|.++++++++-..+.+++-++.+.+...
T Consensus 177 ~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~ 256 (464)
T KOG3764|consen 177 DTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDS 256 (464)
T ss_pred HhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCccc
Confidence 999999999999765 5899999999999999999999999999999999999999999988877777766654333211
Q ss_pred CCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhh
Q 010350 300 LAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSI 379 (512)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~ 379 (512)
..+..++++++++|.++.........+......-..++.++.+.+..+..+.|+.+.
T Consensus 257 -----------------------~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fL 313 (464)
T KOG3764|consen 257 -----------------------TEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFL 313 (464)
T ss_pred -----------------------cccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeec
Confidence 112345689999999999888888888787788889999998888855668999999
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhh
Q 010350 380 LPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYC 459 (512)
Q Consensus 380 ~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 459 (512)
...+..+++..+.|.+.||++.. |......+.+..+++........ +...+++....++++.+.......-.
T Consensus 314 p~~~~y~ig~~lfg~la~k~~~~-------~wl~~~~gl~~~G~~~~~iP~~~-~~~~L~vp~~~l~~~i~~~dasl~P~ 385 (464)
T KOG3764|consen 314 PASLSYAIGTNLFGKLADKYPHL-------RWLLSLGGLATVGVSSGPIPFAT-SIAQLWVPNFGLGFGIGLADASLIPT 385 (464)
T ss_pred ccccchhccCchHHHHHHhcCch-------hHHHHHHHHHHHHHHhchhHhhh-hHHHHhhhhHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999753 21222223333232222222211 11122222333344444444433333
Q ss_pred HhhhcCc------chhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEE
Q 010350 460 THQDISP------EYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVS 504 (512)
Q Consensus 460 ~~~~~~~------~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~ 504 (512)
....+++ +..|.+.++......+|.++||.++|.+++..| ++|.
T Consensus 386 l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iG-F~wl 435 (464)
T KOG3764|consen 386 LGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIG-FEWL 435 (464)
T ss_pred hHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehh-HHHH
Confidence 3333333 257899999999999999999999999999998 6553
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=220.99 Aligned_cols=381 Identities=13% Similarity=0.108 Sum_probs=263.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhh-hcc--cCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCchHHHHHHHHHH
Q 010350 115 LIGTTSLAFVICNMDKVNLSVAIIPM-SHR--FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWS 190 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~ 190 (512)
.+..+.+..+...++.+.+.+.+|.+ .++ +|++..+.+++.+.+.+++.++++++|+++|| +|||+++.++.++++
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~ 90 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLM 90 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHH
Confidence 34445555556666767777777775 444 89999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccc---hhhHHHHHHhhhhhHHHHHhhhhHHhccccC
Q 010350 191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEE---RSRAVSFVFGGLSFGSVAGLLLAPPIIENLG 267 (512)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 267 (512)
++.++.+ .+++++.+++.|++.|++.+...+...++++|++|+++ |+.+.++++.+.++|.++||++++++.++.|
T Consensus 91 ~g~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g 169 (475)
T TIGR00924 91 LGHFMLA-MSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG 169 (475)
T ss_pred HHHHHHH-hcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9887775 45556788889999999999999999999999998754 8889999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHhhccCCCCC---CCCCCcchhhhhhhhh---------------h-h--hh----------
Q 010350 268 WESVFYIFGLLGIAWFSGFKILQEGETSN---GATLAPRSNYINMKKS---------------L-S--AS---------- 316 (512)
Q Consensus 268 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---------------~-~--~~---------- 316 (512)
|++.|++.++..++..+.+.+..+..++. ..+.+++++....... . . ..
T Consensus 170 ~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (475)
T TIGR00924 170 YHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLA 249 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999998865554444443333221111 1111111000000000 0 0 00
Q ss_pred ----HHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhh----hHHHhhhhHHHHHHH
Q 010350 317 ----LEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTE----AAWVSILPPLASVLV 388 (512)
Q Consensus 317 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~----~g~~~~~~~~~~~~~ 388 (512)
......+ ++....+-.|...+..+.+...+....+....+.++.+.++..+.+... .+++.++..+..++.
T Consensus 250 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~ 328 (475)
T TIGR00924 250 VIIFFFRLAFK-PRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVG 328 (475)
T ss_pred HHHHHHHHHHh-ccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHH
Confidence 0000000 0011111112233444555555666666677777888887654544322 667888888888888
Q ss_pred HHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhc--------cCCCChHHHHHHHHHHHHHHHhhhhhhhhH
Q 010350 389 TSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI--------DLGLPHWEIVGILTAGLALSSFALSGLYCT 460 (512)
Q Consensus 389 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 460 (512)
.++..++..|..+|+.......| +.++.++.++++..... ...+..|.+...++.+++.....+......
T Consensus 329 ~p~~~~~~~~l~~~~~~~~~~~k--~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~ 406 (475)
T TIGR00924 329 SPVLAMIWTRLGRKGKDPTTPLK--FTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWW 406 (475)
T ss_pred HHHHHHHHHHHHhCCCCCCcHHH--HHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 88777777777665332222222 23444444444433321 123456677788889999999999999999
Q ss_pred hhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccC
Q 010350 461 HQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTH 499 (512)
Q Consensus 461 ~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g 499 (512)
.+..|++.||+.+|+......+|..+++.+.+...+..|
T Consensus 407 ~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~ 445 (475)
T TIGR00924 407 TKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQG 445 (475)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 998999999999999999999999999999887776654
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-24 Score=215.19 Aligned_cols=375 Identities=13% Similarity=0.107 Sum_probs=247.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhh-hhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCchHHHHHHHHHHHH
Q 010350 115 LIGTTSLAFVICNMDKVNLSVAII-PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSLA 192 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~ 192 (512)
-+..+++..+......+.+...++ .+.+++|++..+.+++.+.+.....+..+++|+++|| +|||++++++.++++++
T Consensus 15 ~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g 94 (489)
T PRK10207 15 PFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIG 94 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHH
Confidence 344444444455555555555544 4678899999999999999998888889999999999 99999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCcc--chhhHHHHHHhhhhhHHHHHhhhhHHhccccCchH
Q 010350 193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE--ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES 270 (512)
Q Consensus 193 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~ 270 (512)
.++++...+....++++|+++|+|.|...+...++++|.+|++ +|++++++++.+.++|.++||.+++++.++.|||+
T Consensus 95 ~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~ 174 (489)
T PRK10207 95 YFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSV 174 (489)
T ss_pred HHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHH
Confidence 9877543332334558999999999999999999999999876 45789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCC---CCCC-Ccchhhhh-----------hhhhhh-hhHHh--------------h
Q 010350 271 VFYIFGLLGIAWFSGFKILQEGETSN---GATL-APRSNYIN-----------MKKSLS-ASLEE--------------M 320 (512)
Q Consensus 271 ~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~-----------~~~~~~-~~~~~--------------~ 320 (512)
.|++.++..++.++.+...++..++. .... .+...... ...... ..... .
T Consensus 175 ~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~ 254 (489)
T PRK10207 175 TYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFF 254 (489)
T ss_pred HHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 99997654333333333333211111 0000 00000000 000000 00000 0
Q ss_pred cCCCCCccHHHHhhcHhHHHHHHH--HHHhHHHHHHHHHHHHHHHHHhcCCChh----hhHHHhhhhHHHHHHHHHHHHH
Q 010350 321 GESLKDVPWKAIFRSKAVWAMIYA--HFCGSWGHYTCLSWLPTYFSEELSLNLT----EAAWVSILPPLASVLVTSIAAQ 394 (512)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~l~~~~g~s~~----~~g~~~~~~~~~~~~~~~~~g~ 394 (512)
.+..+. ++.+|+|.+....+. ..+....+....+.++.+.++..+.+.. ....+..+..+..++..++.++
T Consensus 255 ~~~~~~---~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~ 331 (489)
T PRK10207 255 REAFKL---DKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAG 331 (489)
T ss_pred HHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHH
Confidence 000000 145566665543322 3444455555557788888753333210 1233444555667778888899
Q ss_pred HHhHHHHcCCCccchhHHHHHHHhHHHHHHHHH------hhcc--C-CCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcC
Q 010350 395 FADNLIATGVETTMVRKICQTIAFLSPAVCMTL------SSID--L-GLPHWEIVGILTAGLALSSFALSGLYCTHQDIS 465 (512)
Q Consensus 395 l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 465 (512)
+.||.++|+.......|... ++++.++++.. .... . .+..+.+...++.+++.....+.....+....|
T Consensus 332 l~~rl~~r~~~~~~~~k~~~--G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP 409 (489)
T PRK10207 332 IYTHLGSKGKDLSMPMKFTL--GMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVP 409 (489)
T ss_pred HHHHHhhCCCCCCcHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCh
Confidence 99999988654443444332 22222222211 1111 1 123455667788899999999999999999999
Q ss_pred cchhHHHHHHHHhhhchhhhhHHhhhhhc
Q 010350 466 PEYASILLGITNTVGAVPGIVGVALTGYL 494 (512)
Q Consensus 466 ~~~~g~~~g~~~~~~~lg~~i~p~i~G~l 494 (512)
++.+|.++|+.++..++|+.++..+.+..
T Consensus 410 ~~~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 410 QHLMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998887655
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=215.85 Aligned_cols=359 Identities=15% Similarity=0.176 Sum_probs=253.9
Q ss_pred HHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHH
Q 010350 126 CNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPG 205 (512)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (512)
.++.....+..++.+.+|+|-+ ....|+.+...++..+..++.|+++|.+|||.+++++.++..++.++.+ .+++...
T Consensus 56 ~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~a-tA~~~~~ 133 (599)
T PF06609_consen 56 AYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCA-TAQNMNT 133 (599)
T ss_pred HHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhh-cCCcHHH
Confidence 3445555566678899999954 6678999999999999999999999999999999999999999997774 7888899
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHH
Q 010350 206 LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSG 285 (512)
Q Consensus 206 ~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 285 (512)
++++..+.|+|.|... .....++|..|.+.|+...++..........++|.++..+..+.+|||.|++.+++..+.++.
T Consensus 134 ~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 134 FIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL 212 (599)
T ss_pred HHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence 9999999999977665 455668999999999988887776666666678888887777789999999998876654433
Q ss_pred HH-hh-ccCCCCCCC-CCCcchhhhhhhh--------------------------hhhhhH-----------------Hh
Q 010350 286 FK-IL-QEGETSNGA-TLAPRSNYINMKK--------------------------SLSASL-----------------EE 319 (512)
Q Consensus 286 ~~-~~-~~~~~~~~~-~~~~~~~~~~~~~--------------------------~~~~~~-----------------~~ 319 (512)
.+ +. |++.++.+. +...++. ..+-+ .+.+.. -|
T Consensus 213 ~~~fY~PP~~~~~~~~~~s~~~~-l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE 291 (599)
T PF06609_consen 213 IFFFYFPPPRAQLHGRKLSKREQ-LKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWE 291 (599)
T ss_pred HHHHhCCCchhhhccccCcHHHH-HHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhh
Confidence 32 22 322221111 1111111 11110 000000 00
Q ss_pred hcCC-CCCccHHHHhhc-HhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChh---hhHHHhhhhHHHHHHHHHHHHH
Q 010350 320 MGES-LKDVPWKAIFRS-KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLT---EAAWVSILPPLASVLVTSIAAQ 394 (512)
Q Consensus 320 ~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~---~~g~~~~~~~~~~~~~~~~~g~ 394 (512)
.... ....--.+++|+ |.+....++.++....++....+.|+.....++-++. ..++......++..++..+.+.
T Consensus 292 ~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~ 371 (599)
T PF06609_consen 292 WFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGL 371 (599)
T ss_pred hhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHH
Confidence 0001 111112467787 5566667777888888888889999988877776653 5677778888888899999999
Q ss_pred HHhHHHHcCCCccchhHHHHHHHhHHHH-HHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHH
Q 010350 395 FADNLIATGVETTMVRKICQTIAFLSPA-VCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILL 473 (512)
Q Consensus 395 l~dr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 473 (512)
+..++++ .|+.++++.++.. .+..+......+....+...++.+++.+...........-..|+++.|++.
T Consensus 372 l~~~ir~--------~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~ 443 (599)
T PF06609_consen 372 LFSKIRH--------IKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTAT 443 (599)
T ss_pred HHHHccc--------hhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHH
Confidence 9988753 2344434433333 334444444555555566667778888777777766666678999999999
Q ss_pred HHHHhhhchhhhhHHhhhhhccc
Q 010350 474 GITNTVGAVPGIVGVALTGYLLD 496 (512)
Q Consensus 474 g~~~~~~~lg~~i~p~i~G~l~~ 496 (512)
|+..+++.+|+.+|..+..-+..
T Consensus 444 gL~~s~R~~GGsIg~aIy~~I~~ 466 (599)
T PF06609_consen 444 GLTGSIRSIGGSIGYAIYNAIFT 466 (599)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999988766553
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-24 Score=205.36 Aligned_cols=351 Identities=13% Similarity=0.022 Sum_probs=251.0
Q ss_pred HHhhhhhhhhhhhhhcccCCCchh-hHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHH
Q 010350 127 NMDKVNLSVAIIPMSHRFGWNSSV-AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPG 205 (512)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~g~s~~~-~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (512)
---+.+.+.+.|.+.+++|+|.++ .|.+.+++..+|++++++.|+++||+|.|+++.++.+.+++..++.+ +++++..
T Consensus 39 ~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~-fa~Sl~~ 117 (511)
T TIGR00806 39 AQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLL-LGTSVWH 117 (511)
T ss_pred HHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 345788888999999999999999 99999999999999999999999999999999999999999998886 5666799
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHH---HHHHH
Q 010350 206 LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL---LGIAW 282 (512)
Q Consensus 206 ~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~---~~~~~ 282 (512)
+.+.|++.|++.|+.. +...++..|+|+++|+++.|+..++..+|.++++++++. ...+|||+.+.+.-+ ...+.
T Consensus 118 L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a 195 (511)
T TIGR00806 118 MQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFS 195 (511)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999999999 557899987655433 22344
Q ss_pred HHHHHhhccCCCCCCCCCCcc---h---hhhhhhhhhhhhHHhhcCCCC-------CccHHHHhhcHhHHHHHHHHHHhH
Q 010350 283 FSGFKILQEGETSNGATLAPR---S---NYINMKKSLSASLEEMGESLK-------DVPWKAIFRSKAVWAMIYAHFCGS 349 (512)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 349 (512)
+++.+++|.+++.--..+.+. . +.............+..+... ...++...+|+.+....+.+.+..
T Consensus 196 ~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~ 275 (511)
T TIGR00806 196 VFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNS 275 (511)
T ss_pred HHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHh
Confidence 556667775544211110000 0 000000000000000000000 112456678999988889999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhh
Q 010350 350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS 429 (512)
Q Consensus 350 ~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (512)
++++.+.+|.....++.-+-....-|.+-++..+.+.+..+..|++-.++.+. ..+.+.+..++-+.++++..
T Consensus 276 ~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~-------~~l~l~v~s~~~~gll~~m~ 348 (511)
T TIGR00806 276 AGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW-------SKLLIAVVSAIQAGLVFWMS 348 (511)
T ss_pred hHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh-------HHHHHHHHHHHHHHHhhhhh
Confidence 99999999998888765332222556677888888888889988886554221 12333333333333333333
Q ss_pred ccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHH
Q 010350 430 IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGV 488 (512)
Q Consensus 430 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p 488 (512)
. ..+-+..+++.++....+....+.....++.....+..|.++|+++++.-+-..+-.
T Consensus 349 ~-t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT 406 (511)
T TIGR00806 349 Q-SHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIIT 406 (511)
T ss_pred c-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheE
Confidence 3 233444567778888888877777777788888889999999998887765444433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-24 Score=217.15 Aligned_cols=344 Identities=13% Similarity=0.091 Sum_probs=236.9
Q ss_pred HHhhhhhhhh-hhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh----cCCch-HHHHHHHHHHHHHHHHHHhh
Q 010350 127 NMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRK-VLQTGVLIWSLATALLPLLA 200 (512)
Q Consensus 127 ~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~g~r~-~~~~~~~~~~~~~~~~~~~~ 200 (512)
.+....+..+ .+.+.+++|++..++|++.++..+..++..|+.|+++|| +|||| .++.+...++++.+++....
T Consensus 12 ~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~ 91 (437)
T TIGR00792 12 NFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTP 91 (437)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCC
Confidence 3344444444 444778899999999999999999999999999999998 67744 56677777776665553222
Q ss_pred h-----hHHHHHHHHHHHHhhcccchhhHHHHHHhhc-CccchhhHHHHHHhhhhhHHHHHhhhhHHhc-------cccC
Q 010350 201 G-----FMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPII-------ENLG 267 (512)
Q Consensus 201 ~-----~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-------~~~g 267 (512)
+ ....+++.+++.+++.+.......++..|.. ++++|++..++...+..+|..+++.+.+.+. +..+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g 171 (437)
T TIGR00792 92 DFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFG 171 (437)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 1 1345677788888888887777788888887 5689999999998888888887777665554 2468
Q ss_pred chHHHHHHHHHHHHHHHHH-HhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHH
Q 010350 268 WESVFYIFGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346 (512)
Q Consensus 268 w~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (512)
||+.+++.+++.+++.+.. +..+|++++...+ ++++ ..-...++.+++||.++...+..+
T Consensus 172 ~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~--~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~~~ 232 (437)
T TIGR00792 172 WFMFALVLALIGVVSLIICFFGTKERYSEIPKN--IEKK-----------------LSLKQIFKALFKNDQLLILCLAYL 232 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcc--cccC-----------------CCHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999888877665544 3444432111000 0000 000113467889999998888888
Q ss_pred HhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHH
Q 010350 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT 426 (512)
Q Consensus 347 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (512)
+...+.+....+.+.|.+..++ +....+.+.....++.+++.++.+++.||+++| +. ...+.++.++...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~--------~~-~~~~~~~~~~~~~ 302 (437)
T TIGR00792 233 FYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK--------IL-FAGGILLMVLGYL 302 (437)
T ss_pred HHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH--------HH-HHHHHHHHHHHHH
Confidence 8877777766666766665555 455667777778899999999999999999864 22 2333333333333
Q ss_pred HhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhc-------CcchhHHHHHHHHhhhchhhhhHHhhhhhcccccC
Q 010350 427 LSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDI-------SPEYASILLGITNTVGAVPGIVGVALTGYLLDSTH 499 (512)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g 499 (512)
.......+....++..++.+++.+...+.......+.. +++++|...|+.+++..+|..+++.+.|.+.+..|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 303 IFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred HHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33222222233344445556666555555444444433 35678999999999999999999999999999877
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-24 Score=196.87 Aligned_cols=343 Identities=16% Similarity=0.092 Sum_probs=228.5
Q ss_pred hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccc
Q 010350 140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGV 219 (512)
Q Consensus 140 ~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~ 219 (512)
..+..+.+..-.|++.+.|.+...+.++.||.++||+|||+++++|++..++...+. ..+.|+..+++.|++.|+.-+-
T Consensus 59 ~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~-~~S~~F~afv~aR~l~Gi~kgn 137 (451)
T KOG2615|consen 59 IGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLW-ALSRNFAAFVLARFLGGIFKGN 137 (451)
T ss_pred hCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhccCc
Confidence 344444566778999999999999999999999999999999999999988877766 4778876677779999999876
Q ss_pred chhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcc---ccCchHHHH---HHHHHHHH-HHHHHHhhccC
Q 010350 220 SPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE---NLGWESVFY---IFGLLGIA-WFSGFKILQEG 292 (512)
Q Consensus 220 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~gw~~~f~---~~~~~~~~-~~~~~~~~~~~ 292 (512)
. ....++++|.+++++|+++++......++|.++||.+||++.+ ..|-.+.++ +..+++.. .....+++||+
T Consensus 138 l-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET 216 (451)
T KOG2615|consen 138 L-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET 216 (451)
T ss_pred h-HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 6 5788999999999999999999999999999999999999998 333222222 22222222 34556677777
Q ss_pred CCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHH-------HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010350 293 ETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVW-------AMIYAHFCGSWGHYTCLSWLPTYFSE 365 (512)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~p~~l~~ 365 (512)
-+.+++. ++... ..+...+. ++. .+.++..-....+|+... .+.+..+.+...+..+..+.+.+..+
T Consensus 217 L~~rk~~-~~~~~---~~~~~~~~-~~~-~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~ 290 (451)
T KOG2615|consen 217 LPLRKRN-DEHST---LQEAADDR-LAL-LKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHG 290 (451)
T ss_pred ccchhhc-ccccc---hhhhhhhh-hhh-cchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcC
Confidence 5443333 11000 00000111 111 111111112334443222 23334444444444455555555556
Q ss_pred hcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCChHHHHHHHHH
Q 010350 366 ELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTA 445 (512)
Q Consensus 366 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (512)
.+|+++.+.|-+.+..++.+.+.+.......+|.+.. .+...........-.+++... ...+..+..+..+.
T Consensus 291 rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~-------~~a~l~~~l~~~vP~~llls~-~~~~~~l~~~s~l~ 362 (451)
T KOG2615|consen 291 RFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGN-------IKAVLLFSLLLIVPAFLLLSL-ARTPVVLYLGSTLK 362 (451)
T ss_pred ccCCChhhheeeeehhhHHHHHHHHhccccccccccc-------hhhHHHHHHHHHHHHHHHHhc-cccchhhhHHHHHH
Confidence 7899999999999988888888777776666665421 111111222222222222222 12345556666677
Q ss_pred HHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhccccc
Q 010350 446 GLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDST 498 (512)
Q Consensus 446 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~ 498 (512)
.+......+..........|+++||+++|+..+.+.++-++||.+.|.+....
T Consensus 363 sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 363 SFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred HHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 77666666777777777789999999999999999999999999999988754
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-22 Score=196.85 Aligned_cols=350 Identities=15% Similarity=0.127 Sum_probs=258.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcC-CchHHHHHHHHHHHHHHHHH
Q 010350 119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG-GRKVLQTGVLIWSLATALLP 197 (512)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g-~r~~~~~~~~~~~~~~~~~~ 197 (512)
++..+++.+.....+.|+++.+.++.|+|..|+|.+.++..+..++.++++|.++||.+ +|+++.+..++.++.....
T Consensus 7 Ls~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~- 85 (400)
T PF03825_consen 7 LSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL- 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH-
Confidence 44556666777777889999999999999999999999999999999999999999986 5677767666655555444
Q ss_pred HhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhh-HHhcccc---CchHHHH
Q 010350 198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA-PPIIENL---GWESVFY 273 (512)
Q Consensus 198 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~-~~l~~~~---gw~~~f~ 273 (512)
...++++.+++..++..+...+..|...++..+... ++++..|-....+++|-+++.+.. +.+.... +..+.++
T Consensus 86 ~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (400)
T PF03825_consen 86 AFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY 163 (400)
T ss_pred HHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence 345666778888888899888888999988888775 556677788888888888876542 3333332 2345666
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHH
Q 010350 274 IFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY 353 (512)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (512)
+.+...++.....+.+|+.++++..+...++. ......+++|||++....+..++......
T Consensus 164 i~~~~~~ll~~~~l~lp~~~~~~~~~~~~~~~-------------------~~~~~~~llk~~~~~~Fll~~~l~~~~~~ 224 (400)
T PF03825_consen 164 IAAILSLLLAGFALFLPKTPPKRSAKESVKKL-------------------LGLDALKLLKNPRFLVFLLAAFLIGISHA 224 (400)
T ss_pred HHHHHHHHHHHHHHhCCCCccccccCCCcccc-------------------cchHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 66666555555555666654222111111100 01112478999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCC
Q 010350 354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLG 433 (512)
Q Consensus 354 ~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (512)
...++.+.|+++.-|.+....+.+.++..+.+++.-...+++.+|++.+ .++.++.+..++=..+......
T Consensus 225 ~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~---------~ll~~a~~~~~vR~~l~a~~~~ 295 (400)
T PF03825_consen 225 AYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK---------WLLLLALVAYAVRWLLYAYFSD 295 (400)
T ss_pred HHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999875337888888888898999999999999999998753 4444555554444444444322
Q ss_pred CChHHHHH----HHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhh-chhhhhHHhhhhhcccccC
Q 010350 434 LPHWEIVG----ILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVG-AVPGIVGVALTGYLLDSTH 499 (512)
Q Consensus 434 ~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~lg~~i~p~i~G~l~~~~g 499 (512)
+.+...+. .++.|+.++........++.+.+|++.|++++|+++.+. ++|+.+|..++|+++|.+|
T Consensus 296 ~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g 366 (400)
T PF03825_consen 296 PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG 366 (400)
T ss_pred CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 32332222 235788888889999999999999999999999998764 7999999999999999987
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=209.42 Aligned_cols=381 Identities=14% Similarity=0.085 Sum_probs=247.9
Q ss_pred CcccccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhh
Q 010350 93 GTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWL 172 (512)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l 172 (512)
.+.++.++.+|+.+++. ......+.............++..+ .+.++.+.....+..+++.+|..+|++++|++
T Consensus 68 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~l 141 (521)
T KOG0255|consen 68 PTLDPANPLNWPSWKKW----LLVIVICLDGWVYDYGSSVYSIVSE--WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPL 141 (521)
T ss_pred CccCcCCcccccccccc----ccccccccceeEecCCCCcccccch--hceeeCcHhHHHHHHHHHHHHHHHHHhhheeh
Confidence 45555666677665522 2111222222122222233333332 45667788899999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHH
Q 010350 173 AKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGS 252 (512)
Q Consensus 173 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 252 (512)
+||+|||++++++.++..++.++. .++++++.+++.|++.|++.++.......+++|++++++|+.+..+ ......++
T Consensus 142 sD~~GRk~~~~~~~~~~~i~~~~~-a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~ 219 (521)
T KOG0255|consen 142 SDRFGRKPVLLVSLLLFIIFGILT-AFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGG 219 (521)
T ss_pred HhhcccHHHHHHHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHH
Confidence 999999999999999999988666 5788899999999999999999999999999999999999999999 88888999
Q ss_pred HHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchh--hhhhh-------hhhhh------hH
Q 010350 253 VAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSN--YINMK-------KSLSA------SL 317 (512)
Q Consensus 253 ~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~------~~ 317 (512)
.+++..++++.. +|||.+++..+..++.++..++.+|.++....+.+.++. ..++. ..... ..
T Consensus 220 ~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~ 297 (521)
T KOG0255|consen 220 LMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLL 297 (521)
T ss_pred HHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHh
Confidence 999999999887 899999999999887777755555765533222222111 11110 00000 00
Q ss_pred H--hhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHH
Q 010350 318 E--EMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQF 395 (512)
Q Consensus 318 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l 395 (512)
+ ......++..+..+++.|++....+...+.... +...++.-.+....+|.+... .....+..........+..
T Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~-~~~~y~gl~~~~~~lg~~~~~---~~~~~~~~~~p~~~~~~~~ 373 (521)
T KOG0255|consen 298 RPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFV-FSLVYYGLSLNVSGLGGNIYL---NFTLSGLVELPAYFRNGLL 373 (521)
T ss_pred hHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHH-HhHHHHhhhhhhhhcCchHHH---HHHHHHHHHhhHHHHHHHH
Confidence 0 011111224567788887544433333333322 222222222222334444333 3344444777777777888
Q ss_pred HhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCCh--HHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHH
Q 010350 396 ADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPH--WEIVGILTAGLALSSFALSGLYCTHQDISPEYASILL 473 (512)
Q Consensus 396 ~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 473 (512)
.|+.|| +...........++++...+...... .......+..++.+...........+.+|+..|+.+.
T Consensus 374 ~~~~gR---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~ 444 (521)
T KOG0255|consen 374 LPEFGR---------RPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAV 444 (521)
T ss_pred HHHhCc---------HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 899864 45555555555555554444333332 2233333334444444555566677889999999999
Q ss_pred HHHHhhhchhhhhHHhhhhhccc
Q 010350 474 GITNTVGAVPGIVGVALTGYLLD 496 (512)
Q Consensus 474 g~~~~~~~lg~~i~p~i~G~l~~ 496 (512)
|..++...+|++++|.+.-....
T Consensus 445 ~~~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 445 GAISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999988754433
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=179.54 Aligned_cols=370 Identities=15% Similarity=0.126 Sum_probs=249.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHH
Q 010350 113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 192 (512)
+..............+-....+...|.+....|.+..+..++......+..+++..||.++|++|||+.+.+..+..++.
T Consensus 77 ~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~ 156 (528)
T KOG0253|consen 77 WYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVF 156 (528)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHH
Confidence 34444555555444454555555667788889999999999999999999999999999999999999999998887777
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHH
Q 010350 193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF 272 (512)
Q Consensus 193 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f 272 (512)
..+. ..++|+..+++.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.++...++-....++||||..
T Consensus 157 ~~is-~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l 233 (528)
T KOG0253|consen 157 GVIS-GASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLL 233 (528)
T ss_pred HHhh-cCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 6555 5788889999999999999999 788889999999999999887777 889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhh-----h-hhhh---------h-hhhhHHh-------hcC---CCCC
Q 010350 273 YIFGLLGIAWFSGFKILQEGETSNGATLAPRSNY-----I-NMKK---------S-LSASLEE-------MGE---SLKD 326 (512)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~---------~-~~~~~~~-------~~~---~~~~ 326 (512)
........+.+...++++|+++..-.+.++.+.. + ++++ . ..+..|+ .+. +...
T Consensus 234 ~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~r 313 (528)
T KOG0253|consen 234 FTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVR 313 (528)
T ss_pred HHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccc
Confidence 9888777777888888999876543332222110 0 0000 0 0000000 000 0011
Q ss_pred ccHHHHhh---cHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc-----------------C--CChhhhHHHhhhhHHH
Q 010350 327 VPWKAIFR---SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEEL-----------------S--LNLTEAAWVSILPPLA 384 (512)
Q Consensus 327 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~-----------------g--~s~~~~g~~~~~~~~~ 384 (512)
.....++. ++....++.++|...+.+|+..-.....++... + .+..+--.=.....+.
T Consensus 314 g~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitsla 393 (528)
T KOG0253|consen 314 GGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLA 393 (528)
T ss_pred cchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHh
Confidence 11222322 123334455556666666665555444443211 0 1111111122345678
Q ss_pred HHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhc
Q 010350 385 SVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDI 464 (512)
Q Consensus 385 ~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 464 (512)
.+.|.++.+++.||+||| ..+...+++..++.+......+...... ..+..-++..+.+.....+..+.+
T Consensus 394 efPGlLIt~~iverlGRK---------kTMal~l~~f~iflfll~~c~~rn~~tv-llf~arafisg~fqvaYvYtPEVy 463 (528)
T KOG0253|consen 394 EFPGLLITGVIVERLGRK---------KTMALSLILFGIFLFLLTTCKTRNAYTV-LLFTARAFISGAFQVAYVYTPEVY 463 (528)
T ss_pred hCCchhHHHHHHHHhcch---------hHHHHHHHHHHHHHHHHHHhcCcchhHH-HHHHHHHHHhchheEEEEecCccc
Confidence 889999999999999854 4455555555555554444333322222 223333444445555556667778
Q ss_pred CcchhHHHHHHHHhhhchhhhhHHhhhhhccc
Q 010350 465 SPEYASILLGITNTVGAVPGIVGVALTGYLLD 496 (512)
Q Consensus 465 ~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~ 496 (512)
|...|+++.|..+.+..+|+++.|.++ ...+
T Consensus 464 PTavRatgvGtcSsmaRIggI~~p~iA-~~~e 494 (528)
T KOG0253|consen 464 PTAVRATGVGTCSSMARIGGIFSPVIA-MRAE 494 (528)
T ss_pred chhhhhcchhhhhhHHhhhhhhhhHHH-HHhc
Confidence 999999999999999999999999998 4444
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-21 Score=194.99 Aligned_cols=366 Identities=13% Similarity=0.116 Sum_probs=230.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCchHHHHHHHHHHHHHH
Q 010350 117 GTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSLATA 194 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~ 194 (512)
..+++..+......+.+...++. +.+++|++..+.+++.+.+........+++|+++|| +|||++++++.++++++..
T Consensus 24 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~ 103 (500)
T PRK09584 24 YLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYA 103 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 34444444555565556666555 568899999999998888776666677899999999 5999999999999998887
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccc--hhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHH
Q 010350 195 LLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEE--RSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF 272 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f 272 (512)
+++...++...+++.|++.|++.+...+...+++++++|+++ |..++++++.+.++|..++|.+++++.+++|||+.|
T Consensus 104 l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F 183 (500)
T PRK09584 104 LVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAF 183 (500)
T ss_pred HHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 775443445667788999999999988999999999997543 456788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH----hhccCCCCCCCCCCcchhhhh----------------hhhhhhhh----------HHhhcC
Q 010350 273 YIFGLLGIAWFSGFK----ILQEGETSNGATLAPRSNYIN----------------MKKSLSAS----------LEEMGE 322 (512)
Q Consensus 273 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~----------~~~~~~ 322 (512)
++.++..++..+.+. .+++..+....+..+..+... ........ ......
T Consensus 184 ~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (500)
T PRK09584 184 ALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKE 263 (500)
T ss_pred HHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 997765444332222 222221111100001100000 00000000 000000
Q ss_pred CCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHH--hcCCCh------hhhHHHhhhhHHHHHHHHHHHHH
Q 010350 323 SLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSE--ELSLNL------TEAAWVSILPPLASVLVTSIAAQ 394 (512)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~--~~g~s~------~~~g~~~~~~~~~~~~~~~~~g~ 394 (512)
.. ..++.-++| .+.. +..++....++......|.++.. ..+.+. ...+.+.++..+..++..++.++
T Consensus 264 ~~---~~~~~~~~~-~~~~-~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~ 338 (500)
T PRK09584 264 AF---AMKGAARRK-MIVA-FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAA 338 (500)
T ss_pred Hh---hcCHHHHHH-HHHH-HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHH
Confidence 00 001111222 2222 22334445556666666666543 111221 12455666777777777777777
Q ss_pred HHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccC--------CCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCc
Q 010350 395 FADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDL--------GLPHWEIVGILTAGLALSSFALSGLYCTHQDISP 466 (512)
Q Consensus 395 l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 466 (512)
+-+|.++|.. ......+++++.++++....... .+..|.+...++.+++.....+.....+.+..|+
T Consensus 339 ~~~~l~~r~~-----~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~ 413 (500)
T PRK09584 339 IYNKMGDRLP-----MPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQ 413 (500)
T ss_pred HHHHhCcCCC-----cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcH
Confidence 7677654421 12233444555555544432211 1134677778889999999999999999999999
Q ss_pred chhHHHHHHHHhhhchhhhhHHhhhh
Q 010350 467 EYASILLGITNTVGAVPGIVGVALTG 492 (512)
Q Consensus 467 ~~~g~~~g~~~~~~~lg~~i~p~i~G 492 (512)
+.||+++|+......+|..++..+.+
T Consensus 414 ~~rg~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 414 RLMGFIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999877666666665555544
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-21 Score=189.76 Aligned_cols=351 Identities=17% Similarity=0.164 Sum_probs=245.8
Q ss_pred hcccC--CCchh----hHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHH
Q 010350 141 SHRFG--WNSSV----AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL--PLLAGFMPGLVLSRVL 212 (512)
Q Consensus 141 ~~~~g--~s~~~----~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~r~l 212 (512)
.+.+| .+.++ .+...+++.+|.++|+++.++++||+|||..+.++.++..++.++. +...+.+.+++++|++
T Consensus 46 ~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i 125 (485)
T KOG0569|consen 46 IERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLI 125 (485)
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34556 44443 3567889999999999999999999999999998877766655443 3445778899999999
Q ss_pred HHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhH-Hhc-cccCchHHHHHHHHHHHHHHHHHHhhc
Q 010350 213 VGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAP-PII-ENLGWESVFYIFGLLGIAWFSGFKILQ 290 (512)
Q Consensus 213 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~l~-~~~gw~~~f~~~~~~~~~~~~~~~~~~ 290 (512)
.|+..+........++.|..|.+.||..-.....+..+|..++..++. .+. +...|++.+.+..+.+++..+...++|
T Consensus 126 ~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~P 205 (485)
T KOG0569|consen 126 VGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLP 205 (485)
T ss_pred HHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999966654 333 445699999999999999999999999
Q ss_pred cCCCCCCCCCCcchh---hhhhhhhh---hh-------hHHhh-cCCCCCccHHHHhhcHhHHHHHHH-----HHHhHHH
Q 010350 291 EGETSNGATLAPRSN---YINMKKSL---SA-------SLEEM-GESLKDVPWKAIFRSKAVWAMIYA-----HFCGSWG 351 (512)
Q Consensus 291 ~~~~~~~~~~~~~~~---~~~~~~~~---~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 351 (512)
|+++.--.++.++++ .++..+.. .. +.++. .++.++.++.++++|+....-... ..-...+
T Consensus 206 ESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sG 285 (485)
T KOG0569|consen 206 ESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSG 285 (485)
T ss_pred CCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcC
Confidence 998764432222221 11111111 01 11111 122255678899998765443222 2223333
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhh--
Q 010350 352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS-- 429 (512)
Q Consensus 352 ~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 429 (512)
.+....|...++++ .|++..++.+.....++...+..+++.++.||.||| .+++.+.....++.+++.
T Consensus 286 i~ai~~Yst~i~~~-aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR---------pLll~~~~~~~~~~~~~~~~ 355 (485)
T KOG0569|consen 286 INAIFFYSTSIFKT-AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR---------PLLLISLSLMAVALLLMSIA 355 (485)
T ss_pred cceeHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHHHHH
Confidence 44456666666665 599999999999999999999999999999999965 223333332222222111
Q ss_pred ---ccCCCC---hHHHHHHHHHHHHHHH-hhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcc
Q 010350 430 ---IDLGLP---HWEIVGILTAGLALSS-FALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSW 501 (512)
Q Consensus 430 ---~~~~~~---~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~ 501 (512)
...... +..+++.++..+.++. ..+.......+.+|++.|..+.++..++..+..++-....-.+.+..|.|
T Consensus 356 ~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~ 434 (485)
T KOG0569|consen 356 LFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPY 434 (485)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 111101 1123333444444443 34445556778899999999999999999999999888888888888864
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-24 Score=188.07 Aligned_cols=359 Identities=13% Similarity=0.119 Sum_probs=251.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCchHHHHHHHHHHHHH
Q 010350 115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSLAT 193 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~ 193 (512)
.+..+|+.-|-.++....-+.....+..+.+++.++..++.++|.....+.++++|++.|| +|.|..-++-+++..++.
T Consensus 45 ~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~Gq 124 (459)
T KOG4686|consen 45 ALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQ 124 (459)
T ss_pred HHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHH
Confidence 3344444445555665666666667888889999999999999999999999999999996 677766555555555666
Q ss_pred HHHH--HhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCc---
Q 010350 194 ALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW--- 268 (512)
Q Consensus 194 ~~~~--~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw--- 268 (512)
++++ ...+.+|++..+||+.|+|.-..-.+...+...||..+|.+.++|+..+..-+|+.+--.+.+++.+..+-
T Consensus 125 liFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~ 204 (459)
T KOG4686|consen 125 LIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFP 204 (459)
T ss_pred HHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcc
Confidence 5543 24567899999999999998888888889999999999999999999999999999988888888875331
Q ss_pred ---hHHHHH---HHH----HHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhH
Q 010350 269 ---ESVFYI---FGL----LGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAV 338 (512)
Q Consensus 269 ---~~~f~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (512)
+...-+ .+. ..++++...-+..+..++. ..+++....+ ..+-. ...--.|.+
T Consensus 205 ~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAeri----------lh~e~g~~Ge------~pkLt--dv~~f~ppf 266 (459)
T KOG4686|consen 205 GVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERI----------LHLEEGFLGE------EPKLT--DVNTFYPPF 266 (459)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH----------HhhhcCcccC------Ccccc--cccccCccH
Confidence 111111 111 1112222222222111110 0000000000 00000 001124789
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHh
Q 010350 339 WAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAF 418 (512)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 418 (512)
|.+.++.+++..+.+.+.+.-|.++++.+|+|+..++.+.+.....+++.+++.|.++||.|++ .+....+.
T Consensus 267 w~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n--------~~wv~~a~ 338 (459)
T KOG4686|consen 267 WVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFN--------LWWVASAC 338 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcce--------ehhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999865 12222222
Q ss_pred HHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhccccc
Q 010350 419 LSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDST 498 (512)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~ 498 (512)
+.....-....+..-+++ ..+.++|+............+...+|+++.|++.|+.+.++++|-++.|++.|.+.|.-
T Consensus 339 ~~tl~~H~~l~Ft~lsPy---~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~ 415 (459)
T KOG4686|consen 339 ILTLLGHSGLFFTFLSPY---TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD 415 (459)
T ss_pred HHHHHHhhhHHhhhccHH---HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC
Confidence 222222223333332332 34455666665555555556677789999999999999999999999999999999998
Q ss_pred Ccce
Q 010350 499 HSWS 502 (512)
Q Consensus 499 g~~~ 502 (512)
|+|.
T Consensus 416 g~y~ 419 (459)
T KOG4686|consen 416 GSYD 419 (459)
T ss_pred Cchh
Confidence 8653
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-21 Score=193.76 Aligned_cols=363 Identities=12% Similarity=0.081 Sum_probs=254.3
Q ss_pred hhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhh-----hhH
Q 010350 129 DKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA-----GFM 203 (512)
Q Consensus 129 ~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~ 203 (512)
....++.+.+.+++++|+|..+++++.++.. .+..++++.|+++||+|+|+++.++.++++++.++.++.. .++
T Consensus 42 ~~y~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~ 120 (591)
T PTZ00207 42 FMYAFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSV 120 (591)
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcH
Confidence 3455667788899999999999999988743 4567888899999999999999999999999998876531 467
Q ss_pred HHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHH-HhhhhHHhccccCchHHHHHHHHHHHHH
Q 010350 204 PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVA-GLLLAPPIIENLGWESVFYIFGLLGIAW 282 (512)
Q Consensus 204 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~gw~~~f~~~~~~~~~~ 282 (512)
+.+++.|++.|++.+...+.....+.+++| ++||+++|+...+..+|+++ +++..+++. .+|++.|++.+++.+++
T Consensus 121 ~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv 197 (591)
T PTZ00207 121 VRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVV 197 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999997 78999999999999999986 444444443 36899999998888766
Q ss_pred HHHHHhhccCCCCCC----CCC-Ccchhhhhh---h---------------------------------------h----
Q 010350 283 FSGFKILQEGETSNG----ATL-APRSNYINM---K---------------------------------------K---- 311 (512)
Q Consensus 283 ~~~~~~~~~~~~~~~----~~~-~~~~~~~~~---~---------------------------------------~---- 311 (512)
.++...+.++++... +.+ +++++..++ . +
T Consensus 198 ~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~ 277 (591)
T PTZ00207 198 GILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKV 277 (591)
T ss_pred HHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 555444333222111 100 111110000 0 0
Q ss_pred -----hh---------------------h-h-hH------H-----hhcC------CCC------CccHHHHhhcHhHHH
Q 010350 312 -----SL---------------------S-A-SL------E-----EMGE------SLK------DVPWKAIFRSKAVWA 340 (512)
Q Consensus 312 -----~~---------------------~-~-~~------~-----~~~~------~~~------~~~~~~~~~~~~~~~ 340 (512)
.. . + +. + +.++ +.+ ...+.+.+++..+|.
T Consensus 278 ~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wl 357 (591)
T PTZ00207 278 GFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWC 357 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHH
Confidence 00 0 0 00 0 0000 001 125778888999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhh--hHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHh
Q 010350 341 MIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTE--AAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAF 418 (512)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~--~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 418 (512)
+.+..+|......+....+.+..+..-|.+... ...+.++.++.+.+|++..|.+.....+|+...+..|...+.+..
T Consensus 358 l~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~ 437 (591)
T PTZ00207 358 LLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPS 437 (591)
T ss_pred HHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 999999998888888888888886532663322 223788999999999999999984444443222222444444444
Q ss_pred HHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhH-Hhhhhhcccc
Q 010350 419 LSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVG-VALTGYLLDS 497 (512)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~-p~i~G~l~~~ 497 (512)
+ +.+..++++...+ ...+.++.++.|++.|..+......+.+.+. ++-|+-.-+..+..-+|..+- -.+.|.++|.
T Consensus 438 ~-~~~~~lll~~~~p-~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ 514 (591)
T PTZ00207 438 V-CIITMLTLFLTLP-KAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQ 514 (591)
T ss_pred H-HHHHHHHHHHHCC-ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3333333333322 1567788889999999888888888888888 899988888887777777765 5688888875
Q ss_pred c
Q 010350 498 T 498 (512)
Q Consensus 498 ~ 498 (512)
-
T Consensus 515 e 515 (591)
T PTZ00207 515 Q 515 (591)
T ss_pred H
Confidence 3
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-22 Score=190.48 Aligned_cols=369 Identities=14% Similarity=0.072 Sum_probs=248.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc-ccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS 190 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 190 (512)
|++....+...+++.++...+..++.+...+ +.|+|.+++|.+.++..+...+.+++.|.++||+|.||-++....+..
T Consensus 5 ~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~ 84 (412)
T PF01306_consen 5 KNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILL 84 (412)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHH
Confidence 4466667777777888888889999888665 589999999999999999999999999999999997776554432221
Q ss_pred H--HHHHH----HHhhhh-HHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhc
Q 010350 191 L--ATALL----PLLAGF-MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII 263 (512)
Q Consensus 191 ~--~~~~~----~~~~~~-~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 263 (512)
+ +.... +....| +...+++-+..|++..+..|...+++.++. ++.+.-.|-..+.+++|.+++..++|.+.
T Consensus 85 ~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~ 162 (412)
T PF01306_consen 85 LLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILF 162 (412)
T ss_dssp HTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheee
Confidence 1 11111 111222 122333334445555556666666655543 45566788889999999999999999998
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHH
Q 010350 264 ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIY 343 (512)
Q Consensus 264 ~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (512)
+ .+-+..||+..+.+++..++.+..+++.+++....+....+ +++.+.....+++|+|++|.+.+
T Consensus 163 ~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~k~~~fw~~~l 227 (412)
T PF01306_consen 163 N-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAK--------------KDKVSLKDVLSLFKMRNFWFFVL 227 (412)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS--------------------HHHHHHHTTSHHHHHHHH
T ss_pred e-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccC--------------CCCCcHHHHHHHhcchhHHHHHH
Confidence 6 46677888876665555544444433222221111111000 00001112368899999999988
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhc---CCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHH
Q 010350 344 AHFCGSWGHYTCLSWLPTYFSEEL---SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLS 420 (512)
Q Consensus 344 ~~~~~~~~~~~~~~~~p~~l~~~~---g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 420 (512)
......+.++.+....|.|+...+ +.+....|.+.+...+.+++...+.+++.+|+|.| ..+.++..+
T Consensus 228 ~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k---------~~Lllag~i 298 (412)
T PF01306_consen 228 FVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK---------NLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH---------hHHHHHHHH
Confidence 888777888888888888887543 23445678899999999999999999999999964 333444444
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHH-HhhhchhhhhHHhhhhhcccccC
Q 010350 421 PAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGIT-NTVGAVPGIVGVALTGYLLDSTH 499 (512)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~lg~~i~p~i~G~l~~~~g 499 (512)
+.+=.....+ ..+++++...-++.++-.........-++.+.+|++..++...+. +...++|.++.+.++|.++|..|
T Consensus 299 ~~iRi~~~~~-~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G 377 (412)
T PF01306_consen 299 MAIRIIGSGF-ATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG 377 (412)
T ss_dssp HHHHHHHHHT---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC
Confidence 4443333333 234455566667888888888888888899999999999999996 57779999999999999999998
Q ss_pred cceEEEEec
Q 010350 500 SWSVSYQCP 508 (512)
Q Consensus 500 ~~~~~f~~~ 508 (512)
++..|+++
T Consensus 378 -~~~tylim 385 (412)
T PF01306_consen 378 -FQHTYLIM 385 (412)
T ss_dssp -HHHHHHHH
T ss_pred -cHHHHHHH
Confidence 65555443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=198.58 Aligned_cols=371 Identities=12% Similarity=0.046 Sum_probs=241.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcC-----CchHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG-----GRKVLQTGVLI 188 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g-----~r~~~~~~~~~ 188 (512)
..+.++...++..++.........+.+.+++|+|.++++...++..+...+-.+ +|+++||++ ||+.++++.++
T Consensus 26 ~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 26 VVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL 104 (468)
T ss_pred hHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence 344555556777787733334445557778999999999999999999988655 999999997 77777777666
Q ss_pred HH-HHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhH---HHHHHhhhhhHHHHHhhhhHHhcc
Q 010350 189 WS-LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA---VSFVFGGLSFGSVAGLLLAPPIIE 264 (512)
Q Consensus 189 ~~-~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~~~~~~~g~~~~~~~~~~l~~ 264 (512)
.+ ++....+...++.....+.+++.+++.+.......+++.|..+ +++... .+.......+|.++++.++|.+.+
T Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~ 183 (468)
T TIGR00788 105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD 183 (468)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 52 3332222212333344458899999999999999999999998 555443 333444456899999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHH
Q 010350 265 NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYA 344 (512)
Q Consensus 265 ~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (512)
.++|+..|++.+++.++..+...+++|++.....+..+++.. ..........+..++. .....+.+++|.++...+.
T Consensus 184 ~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~l~~~l~~~~i~~~l~f 260 (468)
T TIGR00788 184 KTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEM-NMALLTLGVLANVKVQ--ILGLRGAIQLLEIAKPLIF 260 (468)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchh-hhhhhhhhHHHHHHHH--HHHHHHHHhcHHHHHHHHH
Confidence 999999999998888777666677777532111110000000 0000000000000000 0123456788888876655
Q ss_pred HHH-hHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHH
Q 010350 345 HFC-GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAV 423 (512)
Q Consensus 345 ~~~-~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (512)
.++ +.........+. .+..+.+|+++.+.|.+....+++.+++..+.+++.+|++.| ....++.++.++
T Consensus 261 ifl~~~~~~~~~~~~f-~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r---------~~l~~~~~l~~~ 330 (468)
T TIGR00788 261 IFLSYANLPGASGSVF-CATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYR---------LLFGVTTLLYTL 330 (468)
T ss_pred HHHHHhhcCCCCceeE-EEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHH---------HHHHHHHHHHHH
Confidence 555 221111111110 022345799999999999999999999988888887776542 233333333333
Q ss_pred HHHHhh-cc------C--CCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhc
Q 010350 424 CMTLSS-ID------L--GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYL 494 (512)
Q Consensus 424 ~~~~~~-~~------~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l 494 (512)
+..... .. . ....+.....++.+++.+....+....+.+..|++++|+.+|+.+++.++|..+++.++|.+
T Consensus 331 ~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l 410 (468)
T TIGR00788 331 SSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLL 410 (468)
T ss_pred HHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322211 00 0 11223334456667777777777788888889999999999999999999999999999999
Q ss_pred ccccC
Q 010350 495 LDSTH 499 (512)
Q Consensus 495 ~~~~g 499 (512)
.+..|
T Consensus 411 ~~~~g 415 (468)
T TIGR00788 411 METIG 415 (468)
T ss_pred HHHcC
Confidence 99887
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=193.59 Aligned_cols=366 Identities=16% Similarity=0.146 Sum_probs=233.2
Q ss_pred HHHHHHHHHHh--hhhhhhhhhhhhccc-----CCCc--hhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHH
Q 010350 119 TSLAFVICNMD--KVNLSVAIIPMSHRF-----GWNS--SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW 189 (512)
Q Consensus 119 ~~~~~~~~~~~--~~~~~~~~~~~~~~~-----g~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 189 (512)
..+..+..+.+ ....++....+.++. ..+. .+.+++.+...++..++++++|+++|++|||+.++++.+++
T Consensus 50 ~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~ 129 (513)
T KOG0254|consen 50 AALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLF 129 (513)
T ss_pred HHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33344444443 344455555555432 2222 34589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccc-cCc
Q 010350 190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LGW 268 (512)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~gw 268 (512)
.++.++.+ .++++.+++++|++.|+|.|........+++|..|++.||...+.......+|..++..++....+. .+|
T Consensus 130 ~iG~ii~~-~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~W 208 (513)
T KOG0254|consen 130 LIGAIIIA-LAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGW 208 (513)
T ss_pred HHHHHHHH-HhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccH
Confidence 99998885 6778899999999999999999999999999999999999999999999999999995555554433 489
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchh--hhhhhhh-----hhhhHH--------hhcCCCCCccHHHHh
Q 010350 269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSN--YINMKKS-----LSASLE--------EMGESLKDVPWKAIF 333 (512)
Q Consensus 269 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~--------~~~~~~~~~~~~~~~ 333 (512)
|..+.+..+.+++..+..+++||+++.-.++....+. ....... ...+.+ +......+..+.+++
T Consensus 209 r~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 288 (513)
T KOG0254|consen 209 RIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELF 288 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhc
Confidence 9999998888888877777888776543322111111 1111010 000000 000011111233433
Q ss_pred h----cHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccch
Q 010350 334 R----SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMV 409 (512)
Q Consensus 334 ~----~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~ 409 (512)
+ ++.+....+..+.+..+.....+|.+.+++. .|.+... .......++..+++..++.++.||+|||
T Consensus 289 ~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~-~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr------- 359 (513)
T KOG0254|consen 289 SPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS-AGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRR------- 359 (513)
T ss_pred CcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh-cCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccH-------
Confidence 3 2334444555555555556677888888865 4665443 4455666777778888889999999854
Q ss_pred hHHHHHHHhHHHHHHHHHhhcc----------C-CCChHHHHHHHHHHHHHHHhhhhhh-hhHhhhcCcchhHHHHHHHH
Q 010350 410 RKICQTIAFLSPAVCMTLSSID----------L-GLPHWEIVGILTAGLALSSFALSGL-YCTHQDISPEYASILLGITN 477 (512)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~ 477 (512)
..++.+.....++..+.... . ....+.++...+.-..+.....+.. ....+.+|.+.|+.+.++..
T Consensus 360 --~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~ 437 (513)
T KOG0254|consen 360 --KLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAV 437 (513)
T ss_pred --HHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHH
Confidence 33334433333333322211 0 1112222222222222222222222 35567789999999999998
Q ss_pred hhhchhhhhHHhhhhhccc
Q 010350 478 TVGAVPGIVGVALTGYLLD 496 (512)
Q Consensus 478 ~~~~lg~~i~p~i~G~l~~ 496 (512)
.+..+...+-....-.+.+
T Consensus 438 ~~n~~~~~~v~~~~~~~~~ 456 (513)
T KOG0254|consen 438 AVNWLWNFLISFFFPFITE 456 (513)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8887766655444333333
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-19 Score=179.12 Aligned_cols=373 Identities=14% Similarity=0.097 Sum_probs=227.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc-CCchHHHHHHHHHHHH
Q 010350 115 LIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWSLA 192 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~ 192 (512)
-+..++...+...+..+.+...+|. +.+++|++..+.+.+.+.+.....++++++|+++||+ |||++++++.++..++
T Consensus 10 ~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg 89 (493)
T PRK15462 10 AIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIG 89 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 3334444444555566666666666 4667899999999999999999999999999999999 9999999999998888
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCcc--chhhHHHHHHhhhhhHHHHHhhhhHHhccccCchH
Q 010350 193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE--ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES 270 (512)
Q Consensus 193 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~ 270 (512)
.++++....+...+.+...+.+++.+...+...++++|.+|++ +|..+.++.+.+.++|+.++|.+.+++.++.||++
T Consensus 90 ~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~ 169 (493)
T PRK15462 90 HVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAM 169 (493)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHH
Confidence 7655422222233444444555666667677788999999875 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCC----CCCCCCcchhhhhh---------------h-hhhhhhHHh-----------
Q 010350 271 VFYIFGLLGIAWFSGFKILQEGETS----NGATLAPRSNYINM---------------K-KSLSASLEE----------- 319 (512)
Q Consensus 271 ~f~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---------------~-~~~~~~~~~----------- 319 (512)
.|.+.++..++.++.+....+...+ ++++.+++ +.... . .........
T Consensus 170 ~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (493)
T PRK15462 170 GFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRAT-NFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGL 248 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998766444333333222211111 11111000 00000 0 000000000
Q ss_pred -----hcCCCCCccHHHHhhcHh--HHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCh----hhhHHHhhhhHHHHHHH
Q 010350 320 -----MGESLKDVPWKAIFRSKA--VWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNL----TEAAWVSILPPLASVLV 388 (512)
Q Consensus 320 -----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~----~~~g~~~~~~~~~~~~~ 388 (512)
.... +. .+.-|+|. +..+.+...++...+....+-+..|..+..+.+. ...++..++..+..++.
T Consensus 249 ~~~~~~~~~--~~--~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l 324 (493)
T PRK15462 249 GVLAKIYRK--AE--NQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLC 324 (493)
T ss_pred HHHHHHHHh--cC--CHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHH
Confidence 0000 00 00012221 1222333333334444444555555554322111 22456677888888888
Q ss_pred HHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhh---c--c---CCCChHHHHHHHHHHHHHHHhhhhhhhhH
Q 010350 389 TSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS---I--D---LGLPHWEIVGILTAGLALSSFALSGLYCT 460 (512)
Q Consensus 389 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 460 (512)
+++.+++-.|..+++..+....|.. +++++.+++++... . . ..+..|++...++..++.-...|.....+
T Consensus 325 ~P~~a~lw~~l~~~~~~~s~~~Kfa--~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~ 402 (493)
T PRK15462 325 GVFLAWVVKESVAGNRTVRIWGKFA--LGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQI 402 (493)
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHH
Confidence 8888888777754433333334443 33333333333221 1 1 12346677778888899999999999999
Q ss_pred hhhcCcchhHHHHHHHHhhh-chhhhhHHhhhhhc
Q 010350 461 HQDISPEYASILLGITNTVG-AVPGIVGVALTGYL 494 (512)
Q Consensus 461 ~~~~~~~~~g~~~g~~~~~~-~lg~~i~p~i~G~l 494 (512)
.+..|++.+|..+|+..... .+|..++..+.+..
T Consensus 403 ~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 403 TRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999985533 45555554444433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-20 Score=188.70 Aligned_cols=340 Identities=11% Similarity=0.038 Sum_probs=219.1
Q ss_pred hhhhhhhh-hhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh----cCCc-hHHHHHHHHHHHHHHHHHHhh---
Q 010350 130 KVNLSVAI-IPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGR-KVLQTGVLIWSLATALLPLLA--- 200 (512)
Q Consensus 130 ~~~~~~~~-~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~g~r-~~~~~~~~~~~~~~~~~~~~~--- 200 (512)
...++.++ ..+.+++|+|..++|.+.++.-+...+..|+.|.++|| +||| +.++.+.+..+++..+.....
T Consensus 25 ~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~ 104 (444)
T PRK09669 25 WQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFG 104 (444)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCC
Confidence 34444444 44778899999999999999999999999999999998 7774 555566666666654432221
Q ss_pred --hhHHHHHHHHHHHHhhcccchhhHHHHHHhhc-CccchhhHHHHHHhhhhhHHHHHhhhhHHhcc-------ccCchH
Q 010350 201 --GFMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-------NLGWES 270 (512)
Q Consensus 201 --~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~gw~~ 270 (512)
.....+++..++.+.+.+....+..++.+|+. ++++|.+..++......+|..+++.+...+.. ..||+.
T Consensus 105 ~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~ 184 (444)
T PRK09669 105 ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFY 184 (444)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH
Confidence 11344555666667777777777788899988 56889998888888888887777765544332 346888
Q ss_pred HHHHHHHHHHHHHHHHHhh-ccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhH
Q 010350 271 VFYIFGLLGIAWFSGFKIL-QEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS 349 (512)
Q Consensus 271 ~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (512)
.+.+.+++++++.+..++. +|+.+.+ + +++. .....++.++|||.++.+.+..++..
T Consensus 185 ~~~i~~ii~~v~~~~~~~~~~e~~~~~-~--~~~~-------------------~~~~~~~~~~~n~~~~~l~~~~~~~~ 242 (444)
T PRK09669 185 AMMVMGLLGVVLFFCCFFMTKERYTPE-V--DNSS-------------------SVWKDLKLLLGNSQWRIMFIFNVVLL 242 (444)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEecCCC-C--cCCC-------------------CHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 8888887766655443333 3321111 0 0000 00113467889999988877777766
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHH-HHHHh
Q 010350 350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAV-CMTLS 428 (512)
Q Consensus 350 ~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 428 (512)
..........+.|.+..++ ++...+.+.....+..+++.++.+++.||+++| +... .+.+...+ ...+.
T Consensus 243 ~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~--------~~~~-~~~~~~~~~~~~~~ 312 (444)
T PRK09669 243 TAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRV--------RAFK-WTIVAFVILSALIF 312 (444)
T ss_pred HHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--------HHHH-HHHHHHHHHHHHHH
Confidence 6665555544444443333 233344455556677788888999999999864 2222 22222222 22222
Q ss_pred hccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcC-------cchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcc
Q 010350 429 SIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDIS-------PEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSW 501 (512)
Q Consensus 429 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~ 501 (512)
.....+....++..++.+++.+...+.......+.++ .+..|...|+.+.+..+|.++|+.+.|.+.+..| |
T Consensus 313 ~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G-y 391 (444)
T PRK09669 313 FIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD-Y 391 (444)
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence 2222233334445566677777666666666655443 3456788999999999999999999999999887 5
Q ss_pred e
Q 010350 502 S 502 (512)
Q Consensus 502 ~ 502 (512)
.
T Consensus 392 ~ 392 (444)
T PRK09669 392 V 392 (444)
T ss_pred C
Confidence 3
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=180.73 Aligned_cols=363 Identities=12% Similarity=0.085 Sum_probs=238.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhh----hcCCchHHHHH-HHHHHHH
Q 010350 118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK----IFGGRKVLQTG-VLIWSLA 192 (512)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~-~~~~~~~ 192 (512)
.++...+...+......+.++.+.+++|.+....+++..+..+...+.+++.|.++| |+|||+.++++ .+...++
T Consensus 8 ~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~ 87 (477)
T TIGR01301 8 RVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFA 87 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHH
Confidence 334444455677777777888888999999999999999999999999999999999 59999999875 4444444
Q ss_pred HHHHHHhhhhH-----------------HHHHHHHHHHHhhcccchhhHHHHHHhhcCccch--hhHHHHHHhhhhhHHH
Q 010350 193 TALLPLLAGFM-----------------PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEER--SRAVSFVFGGLSFGSV 253 (512)
Q Consensus 193 ~~~~~~~~~~~-----------------~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~ 253 (512)
..+++. +.+. ...+++..+..++.....+...++++|..|+++| +.+.++.+.+.++|++
T Consensus 88 l~ll~~-~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~i 166 (477)
T TIGR01301 88 VILIGF-AADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNV 166 (477)
T ss_pred HHHHHh-CchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 444432 2221 1223333344557777778889999999998765 6799999999999999
Q ss_pred HHhhhhHHh--cccc-------------CchHHHHHHHHHHHHHHHH-HHhhccCCCCCCCCCCcchhhhhhhhhhhhhH
Q 010350 254 AGLLLAPPI--IENL-------------GWESVFYIFGLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASL 317 (512)
Q Consensus 254 ~~~~~~~~l--~~~~-------------gw~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (512)
+|+.++++. .+.+ +.|+.|++.+++.+++.+. .+..+|.+....+.. ++++. +
T Consensus 167 lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~-~~~~~-~--------- 235 (477)
T TIGR01301 167 LGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDF-INSEA-A--------- 235 (477)
T ss_pred HHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccc-hhhhc-c---------
Confidence 999999875 2211 5788999988776665544 444555443211110 00000 0
Q ss_pred HhhcCCCCCccHHHHhh-----cHhHHHHHHHHHHhHHHHHHHHHHHHHHHHH-hcCCChhh------h----HHHhhhh
Q 010350 318 EEMGESLKDVPWKAIFR-----SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSE-ELSLNLTE------A----AWVSILP 381 (512)
Q Consensus 318 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~g~s~~~------~----g~~~~~~ 381 (512)
+.++...+..++++++ .|.++.+++..++.+++.+.+..|.+.|+.+ .++-++.. . .+.....
T Consensus 236 -~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~ 314 (477)
T TIGR01301 236 -PPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLN 314 (477)
T ss_pred -cccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHH
Confidence 0000000112233333 3788999999999999999999999999864 45543211 1 1223344
Q ss_pred HHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCC----------------C----ChHHHHH
Q 010350 382 PLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLG----------------L----PHWEIVG 441 (512)
Q Consensus 382 ~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~----~~~~~~~ 441 (512)
.+...+.+++..++.+|++++ |..-.++.++.++++....+... . ....++.
T Consensus 315 s~~~~i~s~~l~~l~~~~g~~--------k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 386 (477)
T TIGR01301 315 SVVLGITSIGMEKLCRGWGAG--------KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIV 386 (477)
T ss_pred HHHHHHHHHHHHHHHHHhccc--------hhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHH
Confidence 455556666677777777642 23333343344444433321110 0 1334555
Q ss_pred HHHHHHHHHHhhhhhhhhHhhhcCc--chhHHHHHHHHhhhchhhhhHHhhhhhcccccCcc
Q 010350 442 ILTAGLALSSFALSGLYCTHQDISP--EYASILLGITNTVGAVPGIVGVALTGYLLDSTHSW 501 (512)
Q Consensus 442 ~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~ 501 (512)
+.+.|+..+.........+.+..++ +..|..+|+.|.+..+..++.....|.+.+..|+-
T Consensus 387 ~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~ 448 (477)
T TIGR01301 387 FAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGG 448 (477)
T ss_pred HHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 6677777777777777777777774 55699999999999999999999999977777743
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-20 Score=177.36 Aligned_cols=276 Identities=13% Similarity=0.080 Sum_probs=202.7
Q ss_pred hhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccc-------------
Q 010350 199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN------------- 265 (512)
Q Consensus 199 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------------- 265 (512)
...+++.+++.-++.|.|.+...+..+.++++..+++++++.+++.+...++|.+++|++++.+...
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 4466789999999999999999999999999999999999999999999999999999999987732
Q ss_pred ---cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHH
Q 010350 266 ---LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMI 342 (512)
Q Consensus 266 ---~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (512)
..|+++|++.+++.++..+.+.+.+.++.+++.. ++... ++. ...++.+++|.++...
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~--~~~~~--------------~~~---~~~~~~~~~~~~~l~~ 146 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADV--ARVSS--------------GDT---TQKTSAFQFTHLVLGA 146 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccc--ccccc--------------ccc---cchhhHHhhHHHHHHH
Confidence 3699999987777665555555554332211100 00000 000 0113567888898888
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHh--cCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHH
Q 010350 343 YAHFCGSWGHYTCLSWLPTYFSEE--LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLS 420 (512)
Q Consensus 343 ~~~~~~~~~~~~~~~~~p~~l~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 420 (512)
+..+++.....+...|++.|+.+. +|+++.+++...+....+.++|+++.+++.||++.+ +.. .++.++
T Consensus 147 ~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~--------~~l-~~~~~l 217 (310)
T TIGR01272 147 LGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG--------RYL-AFNAFL 217 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--------HHH-HHHHHH
Confidence 888888889999999999999754 689999999999999999999999999999999864 222 223333
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCc
Q 010350 421 PAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHS 500 (512)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~ 500 (512)
..++..+..... ........++.|++.+..++.......+..+ ++.+++.++. .++.+|++++|.+.|.+.|..|
T Consensus 218 ~~~~~~l~~~~~--~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~-~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g- 292 (310)
T TIGR01272 218 AVLLSIGAALTH--GYVAMWFVLALGLFNSIMFPTIFSLALNALG-RHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLG- 292 (310)
T ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-
Confidence 333332222221 2333445567788888888887777766554 4466777775 6778999999999999999887
Q ss_pred ceEEEEe
Q 010350 501 WSVSYQC 507 (512)
Q Consensus 501 ~~~~f~~ 507 (512)
.+.+|++
T Consensus 293 ~~~a~~v 299 (310)
T TIGR01272 293 IQLAFAL 299 (310)
T ss_pred chHHHHH
Confidence 5555543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-19 Score=177.39 Aligned_cols=340 Identities=17% Similarity=0.114 Sum_probs=245.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHH-HHHHHHHHh-hhhHHHHHHHHHHHHhhcccchhhHHHHH
Q 010350 151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS-LATALLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDLI 228 (512)
Q Consensus 151 ~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~r~l~G~~~~~~~~~~~~~~ 228 (512)
.++..++..+..++..|+.|.++|+-|+||.++....+.+ +++.++.+. .+.++...+..++.-++.+.......+++
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888999999999999999998777766544433 344444333 34445555666666677778888889999
Q ss_pred HhhcCccch--------------------------hhHHHHHHhhhhhHHHHHhhhhHHhccc--------cCchHHHHH
Q 010350 229 ARSIPLEER--------------------------SRAVSFVFGGLSFGSVAGLLLAPPIIEN--------LGWESVFYI 274 (512)
Q Consensus 229 ~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------~gw~~~f~~ 274 (512)
.|..+++++ ++..+.-.+.+++|+++.-++.-.+... .+.|..+.+
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~ 231 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI 231 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence 999988888 8999999999999998877776554322 235888888
Q ss_pred HHHHHHHHHHH-HHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHH
Q 010350 275 FGLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY 353 (512)
Q Consensus 275 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (512)
.++..++..+. ++++|++++.+..+..... . ....++. ...++++.|.|.+...+++.+++.-+..
T Consensus 232 ~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~--~------~~g~~~l-----~~t~k~~~~~~~~~~fLia~~l~~dg~~ 298 (477)
T PF11700_consen 232 VALWWLVFSIPLFLWLPDRPGPRPLPSGSSY--L------RFGFKRL-----WRTFKEIRKLRQLFLFLIAYFLYSDGVN 298 (477)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCcchhH--H------HHHHHHH-----HHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 88776665544 4445554432111111110 0 0000000 1134667788999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhh----
Q 010350 354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS---- 429 (512)
Q Consensus 354 ~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 429 (512)
++......|.++++|++..+...+.....+.+++|..+.+++.||+|.|. ++.+.........+++....
T Consensus 299 ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~------~~~l~~~l~~~~~i~~~g~~G~~~ 372 (477)
T PF11700_consen 299 TIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKT------KRTLLISLILWIIIPLYGLFGFWP 372 (477)
T ss_pred HHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch------hHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999998751 12222222222222222111
Q ss_pred --ccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEEe
Q 010350 430 --IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQC 507 (512)
Q Consensus 430 --~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~~ 507 (512)
....+.....+..++.|++.+..+.....+..+..|+++.+.-+|++...+...+.+||.+.|.+.|.+|+.+..+..
T Consensus 373 ~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~ 452 (477)
T PF11700_consen 373 SFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLF 452 (477)
T ss_pred cccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 112334445556677888899999999999999999999999999999999999999999999999999988776654
Q ss_pred cC
Q 010350 508 PP 509 (512)
Q Consensus 508 ~~ 509 (512)
..
T Consensus 453 l~ 454 (477)
T PF11700_consen 453 LL 454 (477)
T ss_pred HH
Confidence 43
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-22 Score=187.71 Aligned_cols=374 Identities=20% Similarity=0.214 Sum_probs=251.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc--------CCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHH
Q 010350 113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRF--------GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT 184 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 184 (512)
.+.+.+....+|...++...++...+.+...+ +++....+.+..+..+|.++||+++|++.||+|||+++..
T Consensus 40 fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~ 119 (538)
T KOG0252|consen 40 FKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGK 119 (538)
T ss_pred HHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhH
Confidence 45566667778888888888888777654433 1556677889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhh
Q 010350 185 GVLIWSLATALLPLLA------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL 258 (512)
Q Consensus 185 ~~~~~~~~~~~~~~~~------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 258 (512)
.++++.++++++++.. .-..++.+.|++.|+|.|+-+|...++.+|...+++||..++...++...|...|.++
T Consensus 120 ~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~iv 199 (538)
T KOG0252|consen 120 ELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIV 199 (538)
T ss_pred HHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHH
Confidence 9999999987554221 1246789999999999999999999999999999999999999888888888877777
Q ss_pred hHHhccc---------------cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCc-chhhhhhhhhhhhhHHhhc-
Q 010350 259 APPIIEN---------------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAP-RSNYINMKKSLSASLEEMG- 321 (512)
Q Consensus 259 ~~~l~~~---------------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~- 321 (512)
+-.+... .=||..|-+.++.+++++...+.+||+++.+.....+ +....+.++......++.+
T Consensus 200 t~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~ 279 (538)
T KOG0252|consen 200 ALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAEST 279 (538)
T ss_pred HHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhc
Confidence 6554321 1299999888888888888888888887665211111 0000001111111111100
Q ss_pred ----CCC---CCccHHHHhhc---HhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHH----Hhhh-----hH
Q 010350 322 ----ESL---KDVPWKAIFRS---KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAW----VSIL-----PP 382 (512)
Q Consensus 322 ----~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~----~~~~-----~~ 382 (512)
... ....|.+.+.. +.+...+..+|+.-.++|....+....++. .|..+...-. ..+. ..
T Consensus 280 ~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~~~iia~ 358 (538)
T KOG0252|consen 280 AESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKVAEGNLIIAV 358 (538)
T ss_pred cccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHHHHHHHHHHH
Confidence 000 11113333332 345566778888888888888888888864 4665444332 1111 11
Q ss_pred HHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCC--hHHHHHHHHHHHHHHHhhhhhh--h
Q 010350 383 LASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLP--HWEIVGILTAGLALSSFALSGL--Y 458 (512)
Q Consensus 383 ~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~--~ 458 (512)
...++|-.+...++|++| |+.+.+.++.+..+..+......... ....+.+..+...++.+.|... .
T Consensus 359 ~~~vPGyw~tv~~id~iG---------Rk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfi 429 (538)
T KOG0252|consen 359 CSTVPGYWFTVYFIDIIG---------RKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFI 429 (538)
T ss_pred HccCCceeEEEEEeehhh---------hHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEE
Confidence 222224445556789998 45777777777776666655443311 1111122222333444444433 3
Q ss_pred hHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhccc
Q 010350 459 CTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLD 496 (512)
Q Consensus 459 ~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~ 496 (512)
...+.+|.+.|++..|+...++-.|++++....+++.+
T Consensus 430 vpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~ 467 (538)
T KOG0252|consen 430 VPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTD 467 (538)
T ss_pred eehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhh
Confidence 34567889999999999999999999999999999998
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-19 Score=182.18 Aligned_cols=354 Identities=11% Similarity=0.050 Sum_probs=227.9
Q ss_pred HHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhh----hcCC-chHHHHHHHHHHHHH
Q 010350 120 SLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK----IFGG-RKVLQTGVLIWSLAT 193 (512)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~g~-r~~~~~~~~~~~~~~ 193 (512)
.+..+...+....+.++++. +.+.+|++..++|.+..+.-+..++..|++|.++| |+|| |+.++++.+..+++.
T Consensus 12 g~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~ 91 (473)
T PRK10429 12 GFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVL 91 (473)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHH
Confidence 34444445555556666555 56677999999999999999999999999999999 5698 566666777766665
Q ss_pred HHHHHhhh------hHHHHHHHHHHHHhhcccchhhHHHHHHhhc-CccchhhHHHHHHhhhhhHHHHHhhhhHHhcc--
Q 010350 194 ALLPLLAG------FMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-- 264 (512)
Q Consensus 194 ~~~~~~~~------~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-- 264 (512)
.++ +..+ .+..+++..++.+++.+.......++.+|+. ++++|.+..++...+.++|..+.+.+...+.+
T Consensus 92 ~ll-f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~ 170 (473)
T PRK10429 92 FLL-FSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYV 170 (473)
T ss_pred HHH-HcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444 3322 1234555566777888888888889999998 68999999998777777776666555443322
Q ss_pred -----ccCchHHHHHHHHHHHHHHHHHHh-hccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhH
Q 010350 265 -----NLGWESVFYIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAV 338 (512)
Q Consensus 265 -----~~gw~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (512)
..+|++..++.+++.+++.+..++ .+|+...+..+..++++ ......++.+++||.+
T Consensus 171 g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~n~~~ 233 (473)
T PRK10429 171 GGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSH-----------------LTLKDIVALIYKNDQL 233 (473)
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccC-----------------CCHHHHHHHHhcCHHH
Confidence 235777777766665554443333 44432111100000000 0001123566789999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHh
Q 010350 339 WAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAF 418 (512)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 418 (512)
+.+.+..++.....+....+.+.|++.. ..+....+.+.....++.+++.++.+++.||+++| +.. ..+.
T Consensus 234 ~~ll~~~~~~~~~~~~~~~~~~y~~~y~-~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk--------~~~-~~~~ 303 (473)
T PRK10429 234 SCLLGMALAYNIASNIINGFAIYYFTYV-IGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRR--------ILW-AGAS 303 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhheeeEEEEE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH--------HHH-HHHH
Confidence 8888888888777777777777666544 33555666677777788899999999999999865 222 2222
Q ss_pred HHHHHHHH-Hhh---ccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcC-------cchhHHHHHHHHhhhchhhhhH
Q 010350 419 LSPAVCMT-LSS---IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDIS-------PEYASILLGITNTVGAVPGIVG 487 (512)
Q Consensus 419 ~~~~~~~~-~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~lg~~i~ 487 (512)
++..++.+ +.. ....+....++..++.+++.+........+..+.++ .+..|...|..+.+..+|..++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~ 383 (473)
T PRK10429 304 IFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFA 383 (473)
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHH
Confidence 22221111 111 112222333444455566666555555555554433 4557779999999999999999
Q ss_pred HhhhhhcccccCcce
Q 010350 488 VALTGYLLDSTHSWS 502 (512)
Q Consensus 488 p~i~G~l~~~~g~~~ 502 (512)
+.+.|.+.+..| |.
T Consensus 384 ~~i~g~~l~~~G-y~ 397 (473)
T PRK10429 384 AFFIGVVLGLIG-YV 397 (473)
T ss_pred HHHHHHHHHHcC-CC
Confidence 999999999887 53
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.6e-20 Score=183.44 Aligned_cols=343 Identities=17% Similarity=0.183 Sum_probs=247.8
Q ss_pred Hhhhhhhhh-hhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhh----hcCCchHH-HHHHHHHHHHHHHHHHhhh
Q 010350 128 MDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK----IFGGRKVL-QTGVLIWSLATALLPLLAG 201 (512)
Q Consensus 128 ~~~~~~~~~-~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~g~r~~~-~~~~~~~~~~~~~~~~~~~ 201 (512)
+.....+.+ .+.+.+.+|+++..+|++..+.-+..++..|+.|.++| |+||||.+ +++.+..+++..++....+
T Consensus 15 ~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p 94 (428)
T PF13347_consen 15 MIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPP 94 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhcccc
Confidence 333334334 44577778999999999999999999999999999999 79976555 4677777777766532212
Q ss_pred -------hHHHHHHHHHHHHhhcccchhhHHHHHHhhcC-ccchhhHHHHHHhhhhhHHHHHhhhhHHhcccc-------
Q 010350 202 -------FMPGLVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL------- 266 (512)
Q Consensus 202 -------~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------- 266 (512)
....+.+..++..++.........++.+|+.+ +++|.+..+.-..+..+|..+...+.+.+.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~ 174 (428)
T PF13347_consen 95 AGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSN 174 (428)
T ss_pred chhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccch
Confidence 12235677777799999999999999999996 578999999999888888877777766665422
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHH
Q 010350 267 GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346 (512)
Q Consensus 267 gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (512)
+|++..++.+++.+++.+...+..++++.+....++ +..-...++.+++||.++.+.+..+
T Consensus 175 ~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~-------------------~~~~~~~~~~~~~nr~~~~l~~~~~ 235 (428)
T PF13347_consen 175 GYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK-------------------KISLRDSLRSLFRNRPFRILLLAFF 235 (428)
T ss_pred HHHHHHHHHHHHHHHHhhhhhheeeecccccccccc-------------------ccccccchhhhcccchHHHHHHHHH
Confidence 589998888888777655544443321111110000 1111234578899999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHH
Q 010350 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT 426 (512)
Q Consensus 347 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (512)
+...+........+.|.+..+|.+ ...+.+.....++++++.++.+++.||+|+|+ ....+.++.+++.+
T Consensus 236 ~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~---------~~~~~~~~~~~~~~ 305 (428)
T PF13347_consen 236 LQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKK---------VYIIGLLLAALGFL 305 (428)
T ss_pred HHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHcccee---------ehhhhHHHHHHHHH
Confidence 988888888888898998887777 55667777888999999999999999998752 22333333333333
Q ss_pred HhhccC-CCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcC-------cchhHHHHHHHHhhhchhhhhHHhhhhhccccc
Q 010350 427 LSSIDL-GLPHWEIVGILTAGLALSSFALSGLYCTHQDIS-------PEYASILLGITNTVGAVPGIVGVALTGYLLDST 498 (512)
Q Consensus 427 ~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~ 498 (512)
+..+.. .+..+.++...+.|++.+...........+..+ +++.|...|+.+....++..+++.+.|.+.+..
T Consensus 306 ~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~ 385 (428)
T PF13347_consen 306 LLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV 385 (428)
T ss_pred HHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 333222 456666777777888877766655555554433 456799999999999999999999999999887
Q ss_pred C
Q 010350 499 H 499 (512)
Q Consensus 499 g 499 (512)
|
T Consensus 386 G 386 (428)
T PF13347_consen 386 G 386 (428)
T ss_pred C
Confidence 7
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.3e-19 Score=177.44 Aligned_cols=346 Identities=10% Similarity=0.019 Sum_probs=212.5
Q ss_pred HHHHHHHhhhhhhhhh-hhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc----CCchHH-HHHHHHHHHHHHH
Q 010350 122 AFVICNMDKVNLSVAI-IPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF----GGRKVL-QTGVLIWSLATAL 195 (512)
Q Consensus 122 ~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~----g~r~~~-~~~~~~~~~~~~~ 195 (512)
..+...+......+++ +.+.+.+|++..++|.+.++..+...+..+++|.++||. |||+.+ .++.+...+...+
T Consensus 16 g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~ 95 (448)
T PRK09848 16 GDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVL 95 (448)
T ss_pred chHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHH
Confidence 3334444444444444 346777899999999999999999999999999999996 776644 5555544444333
Q ss_pred HHHhh----h--hHHHHHHHHHHHHhhcccchhhHHHHHHhhc-CccchhhHHHHHHhh-----hhhHHHHHhhhhHHhc
Q 010350 196 LPLLA----G--FMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGG-----LSFGSVAGLLLAPPII 263 (512)
Q Consensus 196 ~~~~~----~--~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~-----~~~g~~~~~~~~~~l~ 263 (512)
..... . .....++..++.+++.+...+...++..++. ++++|.+..++-..+ ..++..++|.+++...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g 175 (448)
T PRK09848 96 VFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSP 175 (448)
T ss_pred HHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 21111 1 1122444556677777777777777777666 446788876665433 3355556666665432
Q ss_pred ccc--CchHHHHHHHHHHHHHHHHH-HhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHH
Q 010350 264 ENL--GWESVFYIFGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWA 340 (512)
Q Consensus 264 ~~~--gw~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (512)
... +|.....+.+++.+++.+.. ...+|+.+.+.+ +. .-...++.++|||.++.
T Consensus 176 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~----~~-------------------~~~~~~~~l~~n~~f~~ 232 (448)
T PRK09848 176 EEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVA----QP-------------------SLKISLQTLKRNRPLFM 232 (448)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCcc----CC-------------------CHHHHHHHHhCCchHHH
Confidence 211 12111122222222222222 222332111100 00 00112467899999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHH
Q 010350 341 MIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLS 420 (512)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 420 (512)
..+..++...+......+.|.|+++.+|.+....++......++.+++.++.+++.||+++| +. ..++.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~--------~~-~~~g~~~ 303 (448)
T PRK09848 233 LCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK--------NT-FLIGALL 303 (448)
T ss_pred HHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH--------HH-HHHHHHH
Confidence 88888888888888888888888888888776666555555667788899999999999754 22 2333333
Q ss_pred HHHHHHHhhccCCCChH-HHHHHHHHHHHHHHhhhhhhhhHhhhcCc-------chhHHHHHHHHhhhchhhhhHHhhhh
Q 010350 421 PAVCMTLSSIDLGLPHW-EIVGILTAGLALSSFALSGLYCTHQDISP-------EYASILLGITNTVGAVPGIVGVALTG 492 (512)
Q Consensus 421 ~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~lg~~i~p~i~G 492 (512)
.++...........+.+ .++..++.+++.+...+.......+..+. +++|...|+.+....+|..+++.+.|
T Consensus 304 ~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g 383 (448)
T PRK09848 304 GTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA 383 (448)
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333232222333 33445556666666555555555554443 35699999999999999999999999
Q ss_pred hcccccC
Q 010350 493 YLLDSTH 499 (512)
Q Consensus 493 ~l~~~~g 499 (512)
.+.+..|
T Consensus 384 ~~l~~~G 390 (448)
T PRK09848 384 FILGLSG 390 (448)
T ss_pred HHHHHcC
Confidence 9988776
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.8e-25 Score=222.07 Aligned_cols=366 Identities=19% Similarity=0.226 Sum_probs=236.7
Q ss_pred HHHHHHHHhhhhhhhhhhhhh--cccCCC---------chhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHH
Q 010350 121 LAFVICNMDKVNLSVAIIPMS--HRFGWN---------SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW 189 (512)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~--~~~g~s---------~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 189 (512)
++.+..+++...++...+... ..++.+ ..+.++..+...++..+|.+++|.++||+|||+.++++.++.
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~ 86 (451)
T PF00083_consen 7 LGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM 86 (451)
T ss_pred HHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence 334556666666655544432 222222 234688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh---hHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcccc
Q 010350 190 SLATALLPLLAG---FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL 266 (512)
Q Consensus 190 ~~~~~~~~~~~~---~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 266 (512)
.++.++.+ .++ +++.+.++|++.|++.|...+....++.|..|+++|++..++......+|..++..++..+.+..
T Consensus 87 ~i~~~~~~-~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 165 (451)
T PF00083_consen 87 IIGSILIA-FAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS 165 (451)
T ss_pred cccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99987775 556 78999999999999999999999999999999999999999999999999999888876664434
Q ss_pred ---CchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchh--hhhhhh---hhhhhHHhhcCCC-----CCccHHHHh
Q 010350 267 ---GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSN--YINMKK---SLSASLEEMGESL-----KDVPWKAIF 333 (512)
Q Consensus 267 ---gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~ 333 (512)
+||+.+++.++.+++..+...++||+++.-..+.+.++. ..++.+ ....+.++..++. .+..+++++
T Consensus 166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 245 (451)
T PF00083_consen 166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLF 245 (451)
T ss_pred ccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeecc
Confidence 499999999988887777778889887643322222211 111100 1111111111111 113456667
Q ss_pred hcHh----HHHHHHHHHHh-HHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccc
Q 010350 334 RSKA----VWAMIYAHFCG-SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTM 408 (512)
Q Consensus 334 ~~~~----~~~~~~~~~~~-~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~ 408 (512)
+++. +........+. ..+......+.|.++++ .+.+.. -.......+...++.+++.++.||+|||+.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~---- 318 (451)
T PF00083_consen 246 RNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKL---- 318 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccccc--cccccccccccccccccccccccccccccc----
Confidence 6643 22222222222 22223445556666643 566655 223344456666677777799999997532
Q ss_pred hhHHHHHHHhHHHHHHHHHh----hccCCC----ChHHHHHHHHHHHHHH-HhhhhhhhhHhhhcCcchhHHHHHHHHhh
Q 010350 409 VRKICQTIAFLSPAVCMTLS----SIDLGL----PHWEIVGILTAGLALS-SFALSGLYCTHQDISPEYASILLGITNTV 479 (512)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 479 (512)
...+....+++.... ...... ....++...+.....+ ...+.......+.+|.+.|+++.|+...+
T Consensus 319 -----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~ 393 (451)
T PF00083_consen 319 -----LIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAV 393 (451)
T ss_pred -----cccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccc
Confidence 222222222222222 111111 1222222222222222 23333334557889999999999999999
Q ss_pred hchhhhhHHhhhhhcccccC
Q 010350 480 GAVPGIVGVALTGYLLDSTH 499 (512)
Q Consensus 480 ~~lg~~i~p~i~G~l~~~~g 499 (512)
+.++++++|.+...+.+..+
T Consensus 394 ~~i~~~i~~~~~~~~~~~~~ 413 (451)
T PF00083_consen 394 GRIGGFIIPFLFPYLFNNLG 413 (451)
T ss_pred cccccccccccccccccccc
Confidence 99999999999999888776
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-18 Score=163.20 Aligned_cols=370 Identities=14% Similarity=0.129 Sum_probs=265.4
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHH
Q 010350 105 PWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT 184 (512)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 184 (512)
..|..++||.+++.+++..+.+.+.+..+++......+.+| +...+-|...+|.+.+....+++-|+.||+|-|..+++
T Consensus 36 ~~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll 114 (480)
T KOG2563|consen 36 GHRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL 114 (480)
T ss_pred ccccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence 44566667888878887777777777777777777777788 77888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh-----hHH--HHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhh
Q 010350 185 GVLIWSLATALLPLLAG-----FMP--GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLL 257 (512)
Q Consensus 185 ~~~~~~~~~~~~~~~~~-----~~~--~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 257 (512)
+..+.+++..+-...+. .++ ..+.+..+.+.+.-.......-+..-||++++|..+..+-..+..+|.+++.+
T Consensus 115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l 194 (480)
T KOG2563|consen 115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL 194 (480)
T ss_pred HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence 99999999877654332 233 66788888888888777777778888999999999999999999999999999
Q ss_pred hhHHhcccc------CchH--HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccH
Q 010350 258 LAPPIIENL------GWES--VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPW 329 (512)
Q Consensus 258 ~~~~l~~~~------gw~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (512)
+...+..+- .|.. .|+..++++.+.+++..+...+++..+......... +..-....
T Consensus 195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------------~~~f~~si 259 (480)
T KOG2563|consen 195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------------DASFPKSI 259 (480)
T ss_pred ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------------cCcHHHHH
Confidence 988887654 3543 244344444333333333322222211111110000 00112345
Q ss_pred HHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccch
Q 010350 330 KAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMV 409 (512)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~ 409 (512)
++.++|+++..+.+...+....++...+.+-..+.. -|++...+|.......+++++++.+.|.+.||.++-
T Consensus 260 ~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~f------- 331 (480)
T KOG2563|consen 260 KSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP-SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKF------- 331 (480)
T ss_pred HHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc-ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhH-------
Confidence 789999999998888888877778877777766644 378878899999999999999999999999998653
Q ss_pred hHHHHHHHhHHHHHH-H--HHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhh
Q 010350 410 RKICQTIAFLSPAVC-M--TLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIV 486 (512)
Q Consensus 410 ~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 486 (512)
++. ..+......++ + ...........++.....++|.+.....|...-+..+..-|...++..|+.++.+++-+.+
T Consensus 332 k~~-~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~ 410 (480)
T KOG2563|consen 332 KLT-TLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVI 410 (480)
T ss_pred HHH-HHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHH
Confidence 222 22222222322 1 1222223333444555556666666666666666667778888999999999999999999
Q ss_pred HHhhhhhcccccC
Q 010350 487 GVALTGYLLDSTH 499 (512)
Q Consensus 487 ~p~i~G~l~~~~g 499 (512)
-..+.|...+..+
T Consensus 411 ~~~~~~~~~~~~~ 423 (480)
T KOG2563|consen 411 LVFIMGILAEDLG 423 (480)
T ss_pred HHHHHHHHhhccC
Confidence 9999999998877
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-17 Score=164.25 Aligned_cols=342 Identities=13% Similarity=0.050 Sum_probs=213.4
Q ss_pred HHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh----cCCch-HHHHHHHHHHHHHHHHHHhh
Q 010350 127 NMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRK-VLQTGVLIWSLATALLPLLA 200 (512)
Q Consensus 127 ~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~g~r~-~~~~~~~~~~~~~~~~~~~~ 200 (512)
.+....++.++.. +.+..|+++..+|.+..+.-+.-++..|+.|.++|| +|||| .++++.+.++++..++ +..
T Consensus 22 ~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ll-f~~ 100 (460)
T PRK11462 22 HIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLA-YST 100 (460)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHH-HhC
Confidence 3344444444443 667789999999999999999999999999999996 68865 4556666666666554 322
Q ss_pred hh------HHHHHHHHHHHHhhcccchhhHHHHHHhhcC-ccchhhHHHHHHhhhhhHHHHHhhhhHHhccc-------c
Q 010350 201 GF------MPGLVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-------L 266 (512)
Q Consensus 201 ~~------~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-------~ 266 (512)
+. ...+.+.-++..++......+..++.+++.+ ++||++..++...+..+|..+++.+...+.+. .
T Consensus 101 p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~ 180 (460)
T PRK11462 101 PDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPL 180 (460)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence 21 2345556666788888888888889999885 78999999999999999888887776555443 2
Q ss_pred CchHHHHHHHHHHHHHHHHHHhh-ccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHH
Q 010350 267 GWESVFYIFGLLGIAWFSGFKIL-QEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAH 345 (512)
Q Consensus 267 gw~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (512)
+|+....+.+++.+++....+.. +|+.+.+ . ++... ...++..++||.++.+....
T Consensus 181 g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~-~---~~~~~-------------------~~~l~~~~~Nk~~~~l~~~~ 237 (460)
T PRK11462 181 GFQGGIAVLSVVAFMMLAFCFFTTKERVEAP-P---TTTSM-------------------REDLRDIWQNDQWRIVGLLT 237 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcceeccCCC-c---cCCCH-------------------HHHHHHHhCChHHHHHHHHH
Confidence 57777777777665555443332 2221111 0 00000 01236778898887776666
Q ss_pred HHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHH
Q 010350 346 FCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCM 425 (512)
Q Consensus 346 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (512)
++..............|.+..+|. +...+.+.....++.+++.++++++.||+++| +.......+.....+
T Consensus 238 ~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk--------~~~~~~~~~~~~~~~ 308 (460)
T PRK11462 238 IFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKV--------TIFWWTNALLAVISL 308 (460)
T ss_pred HHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--------HHHHHHHHHHHHHHH
Confidence 666555555444444444443443 33344566677788888999999999998764 222212221222222
Q ss_pred HHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcC-------cchhHHHHHHHHhhhchhhhhHHhhhhhccccc
Q 010350 426 TLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDIS-------PEYASILLGITNTVGAVPGIVGVALTGYLLDST 498 (512)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~ 498 (512)
.+......+....++..++.+++.+........+..+..+ .+..|...+..+....+|.++++.+.|.+.+..
T Consensus 309 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~ 388 (460)
T PRK11462 309 AMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYG 388 (460)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2222221122222333344455444333332333333222 344566678888899999999999999999877
Q ss_pred Ccce
Q 010350 499 HSWS 502 (512)
Q Consensus 499 g~~~ 502 (512)
| |.
T Consensus 389 G-y~ 391 (460)
T PRK11462 389 G-YD 391 (460)
T ss_pred C-CC
Confidence 6 53
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.2e-21 Score=193.70 Aligned_cols=380 Identities=17% Similarity=0.227 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHH
Q 010350 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL 195 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 195 (512)
+..+++..+.+.+........+..+++.|+++.++.|++.+.+-++..+..++..++.+|..|-+++-+|.++++++.++
T Consensus 5 l~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l 84 (539)
T PF03137_consen 5 LVFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLL 84 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHH
Confidence 33445555555566666677788999999999999999999999999999999999999999989999999999998877
Q ss_pred HHHh---hh----------------------------------------------hHHHHHHHHHHHHhhcccchhhHHH
Q 010350 196 LPLL---AG----------------------------------------------FMPGLVLSRVLVGIGEGVSPSAATD 226 (512)
Q Consensus 196 ~~~~---~~----------------------------------------------~~~~~~~~r~l~G~~~~~~~~~~~~ 226 (512)
++.- .+ .+..++++.++.|+|.++.++.+.+
T Consensus 85 ~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t 164 (539)
T PF03137_consen 85 FALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT 164 (539)
T ss_dssp -------------------------------------------------------------------SSS----------
T ss_pred HhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee
Confidence 6421 00 0235888999999999999999999
Q ss_pred HHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcccc---------------------C-chHHHHHHHHHHHHHHH
Q 010350 227 LIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL---------------------G-WESVFYIFGLLGIAWFS 284 (512)
Q Consensus 227 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---------------------g-w~~~f~~~~~~~~~~~~ 284 (512)
|+-|..++++-+..+|+..++..+|+++|-++++.+.+.+ | |-..|++.+.+.++..+
T Consensus 165 YiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ai 244 (539)
T PF03137_consen 165 YIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAI 244 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877521 1 44455556666666667
Q ss_pred HHHhhccCCCCCCCCCCcchhhhhhh-hhhhhhHHhh------cCCCC--CccHHHHhhcHhHHHHHHHHHHhHHHHHHH
Q 010350 285 GFKILQEGETSNGATLAPRSNYINMK-KSLSASLEEM------GESLK--DVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355 (512)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (512)
.++.+|+.-+...+..+.++....+. +......++. .+..+ ....+++++||.+....++..+......++
T Consensus 245 pl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~ 324 (539)
T PF03137_consen 245 PLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGF 324 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 77777766554411111111100000 0000000000 01111 224578999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChhhhHHHhhhhHH-HHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhc----
Q 010350 356 LSWLPTYFSEELSLNLTEAAWVSILPPL-ASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI---- 430 (512)
Q Consensus 356 ~~~~p~~l~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 430 (512)
.+++|.|++.+++.++.++.++.....+ ++++|.+++|++.+|++-+... ..+...+..++..+.....+.+
T Consensus 325 ~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~---~~~~~~v~~~v~~~~~~~~~~~~C~~ 401 (539)
T PF03137_consen 325 ATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARG---AAKFCIVVSIVSVILYSPLFFLGCPN 401 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHH---HHHHHHHHHHHHHHHHHHHHeecCCC
Confidence 9999999999999999999888766555 6677889999999998654211 1222222222211110101000
Q ss_pred --------cC---------------------------------CC---C-hHHHHHHHHHHHHHHHhhhhhhhhHhhhcC
Q 010350 431 --------DL---------------------------------GL---P-HWEIVGILTAGLALSSFALSGLYCTHQDIS 465 (512)
Q Consensus 431 --------~~---------------------------------~~---~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 465 (512)
.. .. . ...++.+++..+..+....+......+.++
T Consensus 402 ~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~ 481 (539)
T PF03137_consen 402 PPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVP 481 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCC
Confidence 00 00 0 011112222223334444555556678899
Q ss_pred cchhHHHHHHHHhhhc-hhhhhHHhhhhhccccc
Q 010350 466 PEYASILLGITNTVGA-VPGIVGVALTGYLLDST 498 (512)
Q Consensus 466 ~~~~g~~~g~~~~~~~-lg~~i~p~i~G~l~~~~ 498 (512)
+++|+.+.|+..++.+ +|.+-||++.|.+.|..
T Consensus 482 ~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 482 PEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp ----------------------------------
T ss_pred hhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 9999999999997775 57788999999999963
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-17 Score=153.25 Aligned_cols=336 Identities=16% Similarity=0.086 Sum_probs=247.9
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHH-HHHHHHHhhh--hHHHHHHHHHHHHhhcccchhhH
Q 010350 148 SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL-ATALLPLLAG--FMPGLVLSRVLVGIGEGVSPSAA 224 (512)
Q Consensus 148 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~~ 224 (512)
.+..+...++..+...+..|+.|.++|+.|+||..........+ ...++.+..+ +++..++...+..++........
T Consensus 57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy 136 (438)
T COG2270 57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY 136 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence 34567788888888999999999999999987766654444333 3334434444 45667777888899999999999
Q ss_pred HHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhh--HHhc----------------cccCchHHHHHHHHHHHHHHHHH
Q 010350 225 TDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA--PPII----------------ENLGWESVFYIFGLLGIAWFSGF 286 (512)
Q Consensus 225 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~l~----------------~~~gw~~~f~~~~~~~~~~~~~~ 286 (512)
.+++.+..++++.++..++-.....+|+.+.-++. +.+. +...-|..+.+.++..++..+..
T Consensus 137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm 216 (438)
T COG2270 137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM 216 (438)
T ss_pred hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence 99999999998888888887777777777655442 1111 23357888888888777766655
Q ss_pred HhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 010350 287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE 366 (512)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~ 366 (512)
+...++.++.. .+..+. .....++. ...++++.+++.+...+++.+++.-+..++......|-...
T Consensus 217 ~~~v~~~~~~~---~~~~~~------l~~g~k~L-----~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~ 282 (438)
T COG2270 217 ILNVHDAEKIS---SPPPTA------LRNGFKEL-----KSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAAD 282 (438)
T ss_pred Hhccccccccc---ccchHH------HHHHHHHH-----HHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 55444433221 000000 00111111 12347788888999999999999999999999999999988
Q ss_pred cCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCChHHHHHHHHHH
Q 010350 367 LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAG 446 (512)
Q Consensus 367 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 446 (512)
+|++..+..++.....+.+++|+++.|++.||++.| +.+....++...+++...... .+.......++.|
T Consensus 283 ~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k--------~vl~~~lvi~~~~~~~~~~~~--~~~~f~i~gll~g 352 (438)
T COG2270 283 LGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSK--------PVLMIGLVILSIAALYLIFLE--GELDFWILGLLVG 352 (438)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--------eeehHHHHHHHHHHHHHHHcc--ccHHHHHHHHHHH
Confidence 999999999999999999999999999999999875 223333344444444444433 2444445557778
Q ss_pred HHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEEe
Q 010350 447 LALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQC 507 (512)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~~ 507 (512)
...+..+.....+..+.+|+++.++.+|++++.+...+.+||.+.+.+.+.+|+-+..++.
T Consensus 353 ~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~ 413 (438)
T COG2270 353 TSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLS 413 (438)
T ss_pred HhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHH
Confidence 8888899999999999999999999999999999999999999999999999987665543
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.8e-16 Score=150.96 Aligned_cols=353 Identities=14% Similarity=0.127 Sum_probs=247.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh----cCC-chHHHHHHHHHHH
Q 010350 118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGG-RKVLQTGVLIWSL 191 (512)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~g~-r~~~~~~~~~~~~ 191 (512)
...+.-+...........++.. +.+.+|+++..+|.+..+.=+--++.-|+.|.+.|| +|| |+.++.+.+-+++
T Consensus 16 ~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i 95 (467)
T COG2211 16 GYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAI 95 (467)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHH
Confidence 3334444455555555556555 677889999999999999999999999999999996 677 4556667677777
Q ss_pred HHHHHHHhhh------hHHHHHHHHHHHHhhcccchhhHHHHHHhhc-CccchhhHHHHHHhhhhhHHHHHhhhhHHhcc
Q 010350 192 ATALLPLLAG------FMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE 264 (512)
Q Consensus 192 ~~~~~~~~~~------~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 264 (512)
...++ +.++ .....++...+.+++.+....+..++.+++. +++||.+..++-..+..+|..+...+.+.+..
T Consensus 96 ~~~l~-F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~ 174 (467)
T COG2211 96 VAVLL-FITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVK 174 (467)
T ss_pred HHHHH-HcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76665 3443 2345677788999999999999999999988 56899999999999988887776666655543
Q ss_pred -------ccCchHHHHHHHHHHHHHHHHHHh-hccCCCCCCCCCC-cchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhc
Q 010350 265 -------NLGWESVFYIFGLLGIAWFSGFKI-LQEGETSNGATLA-PRSNYINMKKSLSASLEEMGESLKDVPWKAIFRS 335 (512)
Q Consensus 265 -------~~gw~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (512)
..||+..-++.+++..+..+.+++ .+|+..+....+. .+.+ ....+..+++|
T Consensus 175 ~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~-------------------~~~~~~~~~~N 235 (467)
T COG2211 175 LFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLK-------------------LKDSFLLIFKN 235 (467)
T ss_pred HhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCccccccc-------------------HHHHHHHHHcc
Confidence 346777777777776665544443 3343321111110 0000 01123467899
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHH
Q 010350 336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQT 415 (512)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 415 (512)
|.+...++..++...+..........|.+..+|.+.............+.+++.++..++.+|+|+| ....
T Consensus 236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk---------~~~~ 306 (467)
T COG2211 236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK---------KLFL 306 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH---------HHHH
Confidence 9999999888888888888888888888888888888888888888888888899999999999864 2333
Q ss_pred HHhHHHHHHHH-HhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhh-------cCcchhHHHHHHHHhhhchhhhhH
Q 010350 416 IAFLSPAVCMT-LSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQD-------ISPEYASILLGITNTVGAVPGIVG 487 (512)
Q Consensus 416 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~g~~~g~~~~~~~lg~~i~ 487 (512)
.+.++.++... +.....++..+.++..++.+++.+...+....+..+. ...+..|...|.+..+.-+|.+++
T Consensus 307 ~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala 386 (467)
T COG2211 307 IGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALA 386 (467)
T ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHH
Confidence 33444333333 3333323333344444566666665555444444332 244667889999999999999999
Q ss_pred HhhhhhcccccC
Q 010350 488 VALTGYLLDSTH 499 (512)
Q Consensus 488 p~i~G~l~~~~g 499 (512)
..+.|++.+..|
T Consensus 387 ~~~~g~~L~~~G 398 (467)
T COG2211 387 GFIPGWILGAIG 398 (467)
T ss_pred HHHHHHHHHHcC
Confidence 999999999888
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-15 Score=143.64 Aligned_cols=333 Identities=20% Similarity=0.210 Sum_probs=238.0
Q ss_pred hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcC-----CchHHHH-HHHHHHHHHHHHHH----hhh--------
Q 010350 140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG-----GRKVLQT-GVLIWSLATALLPL----LAG-------- 201 (512)
Q Consensus 140 ~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g-----~r~~~~~-~~~~~~~~~~~~~~----~~~-------- 201 (512)
+..|+++...-.+.+.++.++.. ...+.+|..+|+.+ ||..+++ |.++.+.+..+.+. .+.
T Consensus 6 MIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 45788999999999999998775 57999999999998 8877665 44444443333221 122
Q ss_pred h-H--HHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHH---H
Q 010350 202 F-M--PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI---F 275 (512)
Q Consensus 202 ~-~--~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~---~ 275 (512)
. . ......-.+.|+|.+...+...++++|..++++|+++.++...+.-+|.+++..+.+.+.+.+.-.-..-+ .
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~ 164 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV 164 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence 1 1 13445667889999999999999999999999999999999999999999999999999987763333322 2
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHH
Q 010350 276 GLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355 (512)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (512)
+++.++..++..+=.|++..+.....++++. .....|+++..+|+...+.+..++...+++.-
T Consensus 165 a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~-----------------~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~Q 227 (403)
T PF03209_consen 165 ALIALLLNLIALWGQEPRRSRRAAAAERPRP-----------------PFREAWRQVWASPQARRFFVFLFLGTLAFFMQ 227 (403)
T ss_pred HHHHHHHHHHHHHhcccCCcccccCCCCCCc-----------------cHHHHHHHHHhCCChhHHHHHHHHHHHHHHhh
Confidence 2222222233333333332222211111110 01123567778888888888888888888888
Q ss_pred HHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHH--HhhccCC
Q 010350 356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT--LSSIDLG 433 (512)
Q Consensus 356 ~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 433 (512)
...+-+|-.+++|++..+...+....+.+..+|....+++..|-.++ . + ....++...+.++. ...-...
T Consensus 228 D~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~----~--~--~a~~G~~~~~~~f~lii~a~~~~ 299 (403)
T PF03209_consen 228 DVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGK----K--R--TAALGCLLGALAFALIILAGPLG 299 (403)
T ss_pred HHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc----h--H--HHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888999999999999999999999999999999998887642111 1 1 12223333333222 2222334
Q ss_pred CChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhccccc
Q 010350 434 LPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDST 498 (512)
Q Consensus 434 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~ 498 (512)
+........+++|++.+.+.............+++.|..+|.-...+.++..++..++|.+.|..
T Consensus 300 ~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~ 364 (403)
T PF03209_consen 300 SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV 364 (403)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666778889999999999998888888889999999999999999999999999999998854
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-17 Score=167.64 Aligned_cols=288 Identities=16% Similarity=0.187 Sum_probs=224.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT 193 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 193 (512)
.++.++++..+.+.+....+...+..+.+.|+++.++.|++.+.+-++..+...+..+..-|..|-+++-++.+++++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS 176 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence 45666777778888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh------------h-------h--------------------------------hHHHHHHHHHHHHhhcccchh
Q 010350 194 ALLPLL------------A-------G--------------------------------FMPGLVLSRVLVGIGEGVSPS 222 (512)
Q Consensus 194 ~~~~~~------------~-------~--------------------------------~~~~~~~~r~l~G~~~~~~~~ 222 (512)
++.++- . + .+..++++.++.|+|..+.++
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t 256 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT 256 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence 877432 0 0 012577889999999999999
Q ss_pred hHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcccc------------------C-chHHHHHHHHHHHHHH
Q 010350 223 AATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL------------------G-WESVFYIFGLLGIAWF 283 (512)
Q Consensus 223 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------------------g-w~~~f~~~~~~~~~~~ 283 (512)
.+.+|+-|...+++.+..+|+..++..+|+++|-++++++.+.+ | |..-|++.+.+.++..
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a 336 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA 336 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987521 1 5566777777777778
Q ss_pred HHHHhhccCCCCCCCCCCcchhhhhhhhhh-hhhHHhhcCCCC--CccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHH
Q 010350 284 SGFKILQEGETSNGATLAPRSNYINMKKSL-SASLEEMGESLK--DVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLP 360 (512)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 360 (512)
+.++++|+..+...+....++....+.+.. .+......+..+ ....+++++||.+....+...+....+.++.+|+|
T Consensus 337 ~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlP 416 (735)
T KOG3626|consen 337 VPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLP 416 (735)
T ss_pred HHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhH
Confidence 888888877665443211111111111000 000000000111 12457899999999999999999999999999999
Q ss_pred HHHHHhcCCChhhhHHHhhhhHH-HHHHHHHHHHHHHhHHHH
Q 010350 361 TYFSEELSLNLTEAAWVSILPPL-ASVLVTSIAAQFADNLIA 401 (512)
Q Consensus 361 ~~l~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~~ 401 (512)
.|++.++|.++..+..+.....+ +..+|.+++|++.+|+.-
T Consensus 417 KyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl 458 (735)
T KOG3626|consen 417 KYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKL 458 (735)
T ss_pred HHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecc
Confidence 99999999999999988855555 556678889999998854
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-15 Score=142.58 Aligned_cols=350 Identities=16% Similarity=0.224 Sum_probs=221.5
Q ss_pred hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCchHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhhc
Q 010350 140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSLATALLPLLA-GFMPGLVLSRVLVGIGE 217 (512)
Q Consensus 140 ~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~ 217 (512)
..+.+|++.+++.-+.+.|..-.-+.++++|+++|| +|+|+.+..|.+++.++.++++..+ .....++++..+.++|.
T Consensus 52 ~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~ 131 (498)
T COG3104 52 LGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGT 131 (498)
T ss_pred ccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcc
Confidence 344456999999888888887777899999999999 5999999999999999998886543 34578999999999999
Q ss_pred ccchhhHHHHHHhhcCcc--chhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHhhccCCCC
Q 010350 218 GVSPSAATDLIARSIPLE--ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295 (512)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~ 295 (512)
|..=+...++++|.+|++ +|-...++++.+.++|+.++|++.+++.+++||+..|-+.++-..+.++.+...++.-..
T Consensus 132 Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~ 211 (498)
T COG3104 132 GLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKG 211 (498)
T ss_pred ccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcC
Confidence 999999999999999764 377788999999999999999999999999999999999888776666555554432111
Q ss_pred CC-----CCCCcchhhhhhh-------hh---hhhhHHhh----------------cCCCCCccHHHHhhc-HhHH---H
Q 010350 296 NG-----ATLAPRSNYINMK-------KS---LSASLEEM----------------GESLKDVPWKAIFRS-KAVW---A 340 (512)
Q Consensus 296 ~~-----~~~~~~~~~~~~~-------~~---~~~~~~~~----------------~~~~~~~~~~~~~~~-~~~~---~ 340 (512)
.. .....+....... .. .....+.. .+.... ++...+ ++.+ .
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~er~r~~~~~~ 288 (498)
T COG3104 212 IGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRS---PKVFDERRRLLAAIP 288 (498)
T ss_pred CCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CccHHHHHHHHHHHH
Confidence 11 1111110000000 00 00000000 000000 000011 1222 1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcCCC----hhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHH
Q 010350 341 MIYAHFCGSWGHYTCLSWLPTYFSEELSLN----LTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTI 416 (512)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s----~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 416 (512)
+.+...+++..+....+.+..|..+..+.+ .....+.-++..+.-++.+++..++..|.++++..+....|..+..
T Consensus 289 Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl 368 (498)
T COG3104 289 LFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGL 368 (498)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHH
Confidence 222222222222222333334433221111 1234556777888888888899999999777664444334443333
Q ss_pred HhHHHHHHHHHhh---cc----CCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHh
Q 010350 417 AFLSPAVCMTLSS---ID----LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVA 489 (512)
Q Consensus 417 ~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~ 489 (512)
.......+++... .. ..+..|.+...++..++.-+..+.....+.+..|+...+..+|........|..++..
T Consensus 369 ~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~ 448 (498)
T COG3104 369 ILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQ 448 (498)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhce
Confidence 3222222222221 11 1233566777888888888899999999999999988888888776666655555555
Q ss_pred hhh
Q 010350 490 LTG 492 (512)
Q Consensus 490 i~G 492 (512)
+.+
T Consensus 449 va~ 451 (498)
T COG3104 449 VAG 451 (498)
T ss_pred ecc
Confidence 544
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-14 Score=139.94 Aligned_cols=369 Identities=17% Similarity=0.155 Sum_probs=219.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc--cCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCC-chHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHR--FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG-RKVLQTGVLI 188 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~ 188 (512)
+|+.+.+..+..++..+..+++.+..-.+.++ .+.+.+..|++.++..++.+++.+++|+...|.+. |+.+++|.++
T Consensus 32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii 111 (488)
T KOG2325|consen 32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLI 111 (488)
T ss_pred chHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHH
Confidence 34677777777888888877777665444555 77888899999999999999999999999999987 8888888888
Q ss_pred HHHHHHHHHHh---hh-hHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcc
Q 010350 189 WSLATALLPLL---AG-FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE 264 (512)
Q Consensus 189 ~~~~~~~~~~~---~~-~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 264 (512)
..++.++.... .+ .-+.++++|++.|+|.+.. ...=+|+++-...++|.++++....+..+|.++||.+..++..
T Consensus 112 ~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~ 190 (488)
T KOG2325|consen 112 AIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP 190 (488)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence 88888766222 23 4578999999999997766 5667888888877999999999988888888888887765542
Q ss_pred c--cC-----------chHHHHHHHHHHHHHHHHH-HhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHH
Q 010350 265 N--LG-----------WESVFYIFGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWK 330 (512)
Q Consensus 265 ~--~g-----------w~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (512)
- -| +..+-|+.+++.++.++.. +++.|.......+..+.++. ...+.+ +....+
T Consensus 191 Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~------~~~~~~--~~~~~~---- 258 (488)
T KOG2325|consen 191 LGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEE------EKSDIE--KVKKPK---- 258 (488)
T ss_pred hcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchh------hccchh--hhccCC----
Confidence 1 11 2345566676666554443 44444433322221111100 000000 000000
Q ss_pred HHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhh----hHHHHHHHHHHHHHHHhHHHHcCCCc
Q 010350 331 AIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSIL----PPLASVLVTSIAAQFADNLIATGVET 406 (512)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~----~~~~~~~~~~~~g~l~dr~~~~~~~~ 406 (512)
+..+..+.+.+..+...+....+.+..+.+....++.+..++...... .++..+...+. ...-|.++. ..
T Consensus 259 --~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~--~~f~~l~~i--~~ 332 (488)
T KOG2325|consen 259 --LDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLL--YIFTRLGKI--DK 332 (488)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHH--HHHHHhhhh--cc
Confidence 111233444555555555656656666666666667766655443332 22222222222 222232220 00
Q ss_pred cchhHHHHHHHhHHHHHHHHHhh--ccCCC-C--------------------------hHH--HHHHHHHHHHHHHhhhh
Q 010350 407 TMVRKICQTIAFLSPAVCMTLSS--IDLGL-P--------------------------HWE--IVGILTAGLALSSFALS 455 (512)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~--------------------------~~~--~~~~~~~g~~~~~~~~~ 455 (512)
|+. +..+++....+..+.. +.... + .+. +...++.|.+.-.....
T Consensus 333 ---r~~-~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~ 408 (488)
T KOG2325|consen 333 ---RRI-ILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTA 408 (488)
T ss_pred ---cee-eeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccch
Confidence 111 1122122222222111 10000 0 000 01111222222222333
Q ss_pred hhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEE
Q 010350 456 GLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVS 504 (512)
Q Consensus 456 ~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~ 504 (512)
......+...|.+++++.|++......+..++|.+.-.+....| ++..
T Consensus 409 ~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g-~~~v 456 (488)
T KOG2325|consen 409 LDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG-PRPV 456 (488)
T ss_pred HHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcC-ccHH
Confidence 45556677899999999999999999999999999988888877 5443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.3e-14 Score=138.26 Aligned_cols=363 Identities=18% Similarity=0.145 Sum_probs=236.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCch-hhHHHHHHH----HHHHHHhhhhhhhhhhhcCCchHHHHHHH
Q 010350 113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSS-VAGLVQSSF----FWGYALSQLPGGWLAKIFGGRKVLQTGVL 187 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~-~~~~~~s~~----~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 187 (512)
+.......+..+...+......+..+.....++.+.. ..+...... .+...+..+..|.++||+|||..+.....
T Consensus 21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~ 100 (463)
T KOG2816|consen 21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLF 100 (463)
T ss_pred hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHH
Confidence 3555566666666666666666666665555554332 223333333 56777889999999999999999999888
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhh--cccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccc
Q 010350 188 IWSLATALLPLLAGFMPGLVLSRVLVGIG--EGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN 265 (512)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~--~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 265 (512)
...+...+.. +.. ++.++ +.++. .+.......++++|....++|...+|+.+.....+..++|.+++.+.+.
T Consensus 101 ~~~l~~~~~~-~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~ 174 (463)
T KOG2816|consen 101 GTILPALCLL-FQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF 174 (463)
T ss_pred HHHHhHHHHH-HHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 7766665553 333 23333 33332 2355677888999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHH-HHHhhccCCCCCCCCC-CcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHH
Q 010350 266 LGWESVFYIFGLLGIAWFS-GFKILQEGETSNGATL-APRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIY 343 (512)
Q Consensus 266 ~gw~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (512)
.|.-.+|++..+..++..+ ..+++||+..++.+.. ..++....... ..... +... .....-.+|..+.+.+
T Consensus 175 ~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~--~~~~~~~~r~~l~l~l 247 (463)
T KOG2816|consen 175 LGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLD--SSHVA---DAFQ--SLTKVGPDRLLLLLLL 247 (463)
T ss_pred cCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCccc--chhhh---hhhh--hhcccCCCccchHHHH
Confidence 9999999998888776554 4455666554433331 11000000000 00000 0000 0011123455555555
Q ss_pred HHHHhHHHHHHHHH-HHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHH-HHHhHHHHcCCCccchhHHHHHHHhHHH
Q 010350 344 AHFCGSWGHYTCLS-WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAA-QFADNLIATGVETTMVRKICQTIAFLSP 421 (512)
Q Consensus 344 ~~~~~~~~~~~~~~-~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g-~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 421 (512)
..++.......-.. .++.|+...++.+..+.+.+.+.......++..+.. .+...++.+ ....++...-
T Consensus 248 ~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~---------~~i~lGl~~~ 318 (463)
T KOG2816|consen 248 VAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEK---------RLISLGLLSE 318 (463)
T ss_pred HHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hHhhHHHHHH
Confidence 55544443332222 447778888999999999999999888888887777 555555543 2445555555
Q ss_pred HHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccC
Q 010350 422 AVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTH 499 (512)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g 499 (512)
.+...+..+. ...|.+..............+.........++++++|.++++.+.+..+...++|.+.+.++..+-
T Consensus 319 ~~~~~~~af~--~~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 319 FLQLLLFAFA--TETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTL 394 (463)
T ss_pred HHHHHHHHHh--ccchhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 5555554443 234444333344444555667777778888999999999999999999999999999999976554
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.3e-15 Score=139.52 Aligned_cols=188 Identities=18% Similarity=0.118 Sum_probs=154.0
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc--CC
Q 010350 102 YWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GG 178 (512)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--g~ 178 (512)
.|+...++-.+++.++++++++++.++.+..+.-+.|. +.|..|+|..++++..++|.++...|++++|+++||+ ||
T Consensus 240 ~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr 319 (448)
T COG2271 240 AWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGR 319 (448)
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc
Confidence 34444555556788899999999999999999999888 6778899999999999999999999999999999995 67
Q ss_pred chHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhh-HHHHH
Q 010350 179 RKVLQTGVLIWSLATALLPLLAG--FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAG 255 (512)
Q Consensus 179 r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~ 255 (512)
|....+...+....+++....++ ++.+..++.++.|+..-+..........|..|++.-|.+.|+...+.++ |.+.+
T Consensus 320 R~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a 399 (448)
T COG2271 320 RGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALA 399 (448)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhc
Confidence 76665544443333333334444 3478888999999998888888888888999999999999999999999 99999
Q ss_pred hhhhHHhccccCchHHHHHHHHHHHHHHHHHHhh
Q 010350 256 LLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL 289 (512)
Q Consensus 256 ~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 289 (512)
....|++.|.+||...|++..+.++++.+++..+
T Consensus 400 ~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 400 GLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred CCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888777665554443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.3e-13 Score=123.18 Aligned_cols=251 Identities=15% Similarity=0.089 Sum_probs=175.2
Q ss_pred HHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHH
Q 010350 125 ICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP 204 (512)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (512)
+...+...-+|+.-.+.+++|++..|++.+....+....+..++.|.++||+|||+..++-+++++++++.- ..++++
T Consensus 45 La~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k--~~~~~~ 122 (354)
T PF05631_consen 45 LAMAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK--HSSNYP 122 (354)
T ss_pred HHHHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH--hccccH
Confidence 334455556677666778899999999999999999999999999999999999999999999998888543 567789
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHHhhc-----CccchhhHHHHHH-hhhhhHHHHHhhhhHHhccccCc--hHHHHHHH
Q 010350 205 GLVLSRVLVGIGEGVSPSAATDLIARSI-----PLEERSRAVSFVF-GGLSFGSVAGLLLAPPIIENLGW--ESVFYIFG 276 (512)
Q Consensus 205 ~~~~~r~l~G~~~~~~~~~~~~~~~~~~-----~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~gw--~~~f~~~~ 276 (512)
.++++|++.|++.+..+.+..+++..-. |++..+...+... ...++-.+.+.+++.++.+..+. .++|....
T Consensus 123 ~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~ 202 (354)
T PF05631_consen 123 VLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAI 202 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHH
Confidence 9999999999999999998888765333 2222333333333 23344556666677777766554 78888877
Q ss_pred HHHHHHHHHHH-hhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHH
Q 010350 277 LLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355 (512)
Q Consensus 277 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (512)
.+.++..++.. ..+|+........+.. +.. ...++.+.+||+++.+.++..++-.++|.+
T Consensus 203 ~~l~~~~~~I~~~W~ENyg~~~~~~~~~-~~~------------------~~a~~~i~~d~ril~LG~~qslFE~smy~F 263 (354)
T PF05631_consen 203 VLLAVAAVLILKTWPENYGDTSSSSSLS-GSF------------------REAWRAILSDPRILLLGLIQSLFEGSMYLF 263 (354)
T ss_pred HHHHHHHHHHHhcccccCCCcccccchH-HHH------------------HHHHHHHHcCchhHHHHHHHHHHHHHHHHh
Confidence 76665544433 3344332211110000 000 112467788999999999999999999988
Q ss_pred HHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhH
Q 010350 356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADN 398 (512)
Q Consensus 356 ~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr 398 (512)
.....+-++. +-...--|++++.+.++.++|+.+..++..+
T Consensus 264 VflWtPaL~~--~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 264 VFLWTPALDP--DDEELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred eeeeeceecC--CCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7655555541 2223457889999989999988887665543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-14 Score=144.30 Aligned_cols=161 Identities=18% Similarity=0.236 Sum_probs=128.6
Q ss_pred hhhhhhhhhhcccCCCc--------hhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhh--
Q 010350 132 NLSVAIIPMSHRFGWNS--------SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG-- 201 (512)
Q Consensus 132 ~~~~~~~~~~~~~g~s~--------~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-- 201 (512)
......+.+.++.|.+. ...+...++..++..++.++.|+++||+|+|+++.++.++.+++..+......
T Consensus 226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~ 305 (418)
T TIGR00889 226 ITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEY 305 (418)
T ss_pred HHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcch
Confidence 33445565556666443 66799999999999999999999999999999999999988777655543222
Q ss_pred -hHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHH-hhhhhHHHHHhhhhHHhccc------cCchHHHH
Q 010350 202 -FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVF-GGLSFGSVAGLLLAPPIIEN------LGWESVFY 273 (512)
Q Consensus 202 -~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~------~gw~~~f~ 273 (512)
+++.+++.+++.|++.+...+....++.|++|+++|++++|+.+ ....+|.++||+++|++.++ +||++.|+
T Consensus 306 ~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~ 385 (418)
T TIGR00889 306 FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWL 385 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHH
Confidence 23567778999999999888888999999999999999999997 67889999999999999987 46999999
Q ss_pred HHHHHHHHHHHH-HHhhccC
Q 010350 274 IFGLLGIAWFSG-FKILQEG 292 (512)
Q Consensus 274 ~~~~~~~~~~~~-~~~~~~~ 292 (512)
+.+++.+++.+. .++++++
T Consensus 386 ~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 386 FFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHHHHHhCCc
Confidence 888877665444 4445544
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-13 Score=139.98 Aligned_cols=170 Identities=12% Similarity=0.093 Sum_probs=128.4
Q ss_pred HHHhhhhhhhhhhhhh-cccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHH-HH-Hhhhh
Q 010350 126 CNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL-LP-LLAGF 202 (512)
Q Consensus 126 ~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-~~-~~~~~ 202 (512)
.......+..++|.+. +++|.+..+.++..+...++..++.+++|+++||+|||+.+.++.++..++... .. ..+++
T Consensus 262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (490)
T PRK10642 262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNV 341 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3344455566777754 678999888888888888999999999999999999999988876654433322 11 12344
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcccc-CchHHHHHHHHHHHH
Q 010350 203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYIFGLLGIA 281 (512)
Q Consensus 203 ~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-gw~~~f~~~~~~~~~ 281 (512)
...+++++++.|++.+...+....++.+.+|++.|++++|+......+++.++|.+.+++.+.. +|+..+++..+.+++
T Consensus 342 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i 421 (490)
T PRK10642 342 IGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVI 421 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 5677788999988877777777888899999999999999865556677788999999888764 478777777777776
Q ss_pred HHHHHHhhccCCCC
Q 010350 282 WFSGFKILQEGETS 295 (512)
Q Consensus 282 ~~~~~~~~~~~~~~ 295 (512)
.++..+++||+++.
T Consensus 422 ~~~~~~~~pes~~~ 435 (490)
T PRK10642 422 GLITGVTMKETANR 435 (490)
T ss_pred HHHHHHHhccccCC
Confidence 66666777887654
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-13 Score=136.04 Aligned_cols=158 Identities=16% Similarity=0.114 Sum_probs=126.9
Q ss_pred hhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 010350 132 NLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSR 210 (512)
Q Consensus 132 ~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 210 (512)
.+....|. +++++|.+..+.+++.+...+...++.+++|+++||+|||+.+..+.+...+..... ...++.+.+++.+
T Consensus 234 ~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~ 312 (393)
T PRK15011 234 LYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGM-LMAHSPAILLGLQ 312 (393)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHH
Confidence 34445665 557789999999999888888888899999999999999998887765544443333 3445566777888
Q ss_pred HHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHhhc
Q 010350 211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQ 290 (512)
Q Consensus 211 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~ 290 (512)
++.+++.+...+....+..|.+| ++|++++++++....+|..++|.++|.+.++.||++.|++.+++.++.++..++.+
T Consensus 313 ~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 391 (393)
T PRK15011 313 LLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIK 391 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 88888877777777788889888 56999999999999999999999999999999999999988887777776666654
Q ss_pred c
Q 010350 291 E 291 (512)
Q Consensus 291 ~ 291 (512)
+
T Consensus 392 ~ 392 (393)
T PRK15011 392 D 392 (393)
T ss_pred C
Confidence 3
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=8e-14 Score=142.10 Aligned_cols=175 Identities=15% Similarity=0.071 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHH
Q 010350 115 LIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT 193 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 193 (512)
.++.+++..++.+.....+..+.|. +.+++|+|..+.++..+.+.++..++.+++|+++||+|||+.+.+...+..++.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~ 338 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIF 338 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 3445555555555555566777886 557799999999999999999999999999999999999988766544433332
Q ss_pred HHHH-HhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhh-HHHHHhhhhHHhcc-------
Q 010350 194 ALLP-LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIE------- 264 (512)
Q Consensus 194 ~~~~-~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~------- 264 (512)
.+.. ...++...+.+.+++.|++.............|.+|++.|+.+.|+.+...++ |.+++|.+.|++.+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~ 418 (467)
T PRK09556 339 TLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTP 418 (467)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccc
Confidence 2211 12344456667888888765444444446777999999999999999999886 77999999999999
Q ss_pred -----ccCchHHHHHHHHHHHHHHHHHHhh
Q 010350 265 -----NLGWESVFYIFGLLGIAWFSGFKIL 289 (512)
Q Consensus 265 -----~~gw~~~f~~~~~~~~~~~~~~~~~ 289 (512)
..||+..|++.++..++.++..+++
T Consensus 419 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 419 IFGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999877776655544433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.3e-14 Score=137.46 Aligned_cols=154 Identities=16% Similarity=0.117 Sum_probs=127.1
Q ss_pred hhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhh-hHHHHH
Q 010350 129 DKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG-FMPGLV 207 (512)
Q Consensus 129 ~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 207 (512)
.........+.+.+++|.+..+.+++.+++.++..++.++.|++.||+|||+.+.++.++..++..+...... +...++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (377)
T TIGR00890 220 SGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFL 299 (377)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHH
Confidence 3333444455566788999999999999999999999999999999999999999888887777665543222 122344
Q ss_pred HHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHH
Q 010350 208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW 282 (512)
Q Consensus 208 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~ 282 (512)
+..++.|++.+...+....+++|.+|+++|++++|+.+....+|..++|.+.|.+.++.||++.|++.+++.++.
T Consensus 300 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 300 ATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 567788888888888888899999999999999999999999999999999999999999999999988766554
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.2e-13 Score=141.83 Aligned_cols=139 Identities=12% Similarity=0.034 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhc
Q 010350 153 LVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI 232 (512)
Q Consensus 153 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~ 232 (512)
+...+..++.+++.++.|+++||+|||++++++.++.+++.++.++ .++...+++.+++.|++.++.++...++++|++
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~-~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSF-GNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3355666888999999999999999999999999998888877654 444466778888889988888999999999999
Q ss_pred CccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHhhccCC
Q 010350 233 PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGE 293 (512)
Q Consensus 233 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~ 293 (512)
|.++|++++|+..++..+|.+++|++++.+.+. +...+|++.+++.++..++..++||+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999988764 466778888777777666666777654
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.4e-14 Score=117.53 Aligned_cols=134 Identities=29% Similarity=0.508 Sum_probs=116.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCc
Q 010350 155 QSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL 234 (512)
Q Consensus 155 ~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~ 234 (512)
.+.+.++..++.++.|++.||+|||+.+..+..+..++.++.. ..++.+.+.+.+++.|++.+...+....++.|.+|+
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFA-LSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP 82 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence 3456678889999999999999999999999888877776664 456678888999999999999999999999999999
Q ss_pred cchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHhh
Q 010350 235 EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL 289 (512)
Q Consensus 235 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 289 (512)
++|++.+++.+....+|..++|.+++.+.+..+|++.+++.+++.++..+...++
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999888776665554443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.3e-13 Score=132.83 Aligned_cols=161 Identities=20% Similarity=0.141 Sum_probs=130.8
Q ss_pred hhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 010350 131 VNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSR 210 (512)
Q Consensus 131 ~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 210 (512)
.....+++.+.++.|. .+.++..+.+.++..++.++.|++.||+|+|+.+..+.++.+++..+.. ..++.+.+++.+
T Consensus 233 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 309 (399)
T PRK05122 233 GTIATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLW-LAPSPWMALIGA 309 (399)
T ss_pred HHHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHH
Confidence 3344455555555565 3456777888889999999999999999999999988887777776654 345556778889
Q ss_pred HHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHhhc
Q 010350 211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQ 290 (512)
Q Consensus 211 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~ 290 (512)
++.|++.+...+.....+.+..|+++|++++++++....+|..++|.+.|++.++.||++.|++.+++.++.++...+++
T Consensus 310 ~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (399)
T PRK05122 310 ALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLY 389 (399)
T ss_pred HHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999888888888889999999999999999999999999999999999999999999998888777666666665
Q ss_pred cCCC
Q 010350 291 EGET 294 (512)
Q Consensus 291 ~~~~ 294 (512)
++++
T Consensus 390 ~~~~ 393 (399)
T PRK05122 390 RRAP 393 (399)
T ss_pred cccc
Confidence 5443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.3e-13 Score=132.96 Aligned_cols=348 Identities=16% Similarity=0.132 Sum_probs=215.3
Q ss_pred hhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcC-----CchHHHHHHHHHHHHHHHHHHhh---hhHHH
Q 010350 134 SVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG-----GRKVLQTGVLIWSLATALLPLLA---GFMPG 205 (512)
Q Consensus 134 ~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g-----~r~~~~~~~~~~~~~~~~~~~~~---~~~~~ 205 (512)
....+.+++++|+++.+...+.++..+... ..+++|.++|-+. ||+.++++.++..++....+... .+...
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~ 88 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI 88 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence 344667889999999999998888888774 5788999999863 55555566665544444443333 24566
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHhhc--CccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHH
Q 010350 206 LVLSRVLVGIGEGVSPSAATDLIARSI--PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF 283 (512)
Q Consensus 206 ~~~~r~l~G~~~~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~ 283 (512)
..++.++..+|.+.......+.+.|.. .+++||...+.......+|.+++..++|.+.+..++++.|.+.+++..+..
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~ 168 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML 168 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence 777888899999999999999999988 334578888898999999999999999999999999999999888877665
Q ss_pred HHHHhhccCCCCCCCCC-Ccchhh-hhhh-hhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHH-HHHHhHHHHHHHHHHH
Q 010350 284 SGFKILQEGETSNGATL-APRSNY-INMK-KSLSASLEEMGESLKDVPWKAIFRSKAVWAMIY-AHFCGSWGHYTCLSWL 359 (512)
Q Consensus 284 ~~~~~~~~~~~~~~~~~-~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 359 (512)
+..+++.++++...... ....+. .... ...++. ....++.++.|.+|...+ ..++............
T Consensus 169 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~ 239 (433)
T PF03092_consen 169 IVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQ---------LSELWRALQQRAIWQPILFFIFFFNLPPSISSASS 239 (433)
T ss_pred HHHHHhhhhccccccchhhcccccccchhhHHHHHH---------HHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccE
Confidence 55555544321111110 000000 0000 000000 112356777888887666 2222222111110100
Q ss_pred HHHHHHhcC---CChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhcc-----
Q 010350 360 PTYFSEELS---LNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID----- 431 (512)
Q Consensus 360 p~~l~~~~g---~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 431 (512)
-.+..+..+ +++...+.+..+..++.++|..+. +++..+. ..|+......++.....+.-..+.
T Consensus 240 fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y----~~~~~~~----~~R~~~~~t~~~~~~~~l~~~~lv~~~n~ 311 (433)
T PF03092_consen 240 FYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLY----RKYFSNW----SWRRIFVVTTLVSVLASLFDLLLVTRWNL 311 (433)
T ss_pred EEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHH----HHHHhCC----CHHHHHHHHHHHHHHHhcccEEEEEEEee
Confidence 001122344 777777776655555555555444 3443322 124443333332222222111110
Q ss_pred ---CCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccC
Q 010350 432 ---LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTH 499 (512)
Q Consensus 432 ---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g 499 (512)
.++....+...++..+.......+......+..|+...|+.+|+..++.++|..++..++..+.+..|
T Consensus 312 ~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 312 DLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred eeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 01112222233445555566666777778888999999999999999999999999999999988776
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=138.20 Aligned_cols=147 Identities=12% Similarity=0.049 Sum_probs=124.1
Q ss_pred cccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccch
Q 010350 142 HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSP 221 (512)
Q Consensus 142 ~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~ 221 (512)
.+.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++..+.+ ..++.+.+++.+++.|++.+...
T Consensus 255 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~l~g~~~~~~~ 333 (420)
T PRK09528 255 ATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSG-FATGPLEVSILKLLHAFEVPFLL 333 (420)
T ss_pred hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHH
Confidence 34467778889999999999999999999999999999999998888888776664 45666788889999999988887
Q ss_pred hhHHHHHHhhcCccchhhHHHH-HHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHhh
Q 010350 222 SAATDLIARSIPLEERSRAVSF-VFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL 289 (512)
Q Consensus 222 ~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 289 (512)
+....++.+.+|++.++...+. ++....+|.+++|.++|++.+..||+..|++.+++.++..+...+.
T Consensus 334 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~ 402 (420)
T PRK09528 334 VGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFT 402 (420)
T ss_pred HHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999998888887665 6777889999999999999999999999999888876655444443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.6e-13 Score=131.04 Aligned_cols=151 Identities=18% Similarity=0.098 Sum_probs=121.7
Q ss_pred hhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 010350 137 IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIG 216 (512)
Q Consensus 137 ~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~ 216 (512)
.|.+.++.|.|..+.+++.++..++..++.++.|+++||+|||++.. +..+..++..+.....++.+.++++.++.|++
T Consensus 229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~ 307 (390)
T PRK03545 229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIA 307 (390)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 34456668999999999999999999999999999999999887544 44444444433333455667778888999999
Q ss_pred cccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHhh
Q 010350 217 EGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL 289 (512)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 289 (512)
.+...+.....+.+..| ++|++++|+++....+|..+||+++|.+.+++|++..|++.+++.++..+.....
T Consensus 308 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 308 IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence 88777777788888776 6899999999999999999999999999999999999999988877665554443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.7e-11 Score=114.99 Aligned_cols=347 Identities=14% Similarity=0.089 Sum_probs=227.4
Q ss_pred hhhhhcc-cCCCchhhH-HHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 010350 137 IIPMSHR-FGWNSSVAG-LVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVG 214 (512)
Q Consensus 137 ~~~~~~~-~g~s~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G 214 (512)
.|.+.+. .|++..|+. -+.-+..-.+...-++...+.|..|.|++++++.+...+...++ ...++...+-+..++.|
T Consensus 27 ~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~ll-l~~~sv~~mq~~q~~yg 105 (412)
T PF01770_consen 27 TPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLL-LFGTSVLAMQLMQFFYG 105 (412)
T ss_pred hHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHCcHHHHHHHHHHHH
Confidence 3344443 789888875 34455556677888899999999999999999988876666555 56788889999999999
Q ss_pred hhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcc--ccCchHHHHHHHHHHHHHHHHHHhhccC
Q 010350 215 IGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE--NLGWESVFYIFGLLGIAWFSGFKILQEG 292 (512)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~gw~~~f~~~~~~~~~~~~~~~~~~~~ 292 (512)
++.+. ..+..+++-...++++-.++.+...+...+|-.++.++|-.+.. ..+++...++......+.++..+++|.+
T Consensus 106 ~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~ 184 (412)
T PF01770_consen 106 LATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMP 184 (412)
T ss_pred HHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99775 56777888888898999999999999999999999999987776 3445666666555555566666777776
Q ss_pred CCCCCCCCCcch-------hhhhhhhhhhhh-HHhhcCCCC-----------CccHHHHhhcHhHHHHHHHHHHhHHHHH
Q 010350 293 ETSNGATLAPRS-------NYINMKKSLSAS-LEEMGESLK-----------DVPWKAIFRSKAVWAMIYAHFCGSWGHY 353 (512)
Q Consensus 293 ~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (512)
++...-.+...+ +....++....+ .++..+... ...+++..+||.++...+.+.+..++++
T Consensus 185 ~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~ 264 (412)
T PF01770_consen 185 KRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYY 264 (412)
T ss_pred CcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHH
Confidence 543221111100 000000000000 000000000 1124566788999999999999999999
Q ss_pred HHHHHHHHHHHHh--cCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhcc
Q 010350 354 TCLSWLPTYFSEE--LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID 431 (512)
Q Consensus 354 ~~~~~~p~~l~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (512)
...+|......+. -+-...--|.+-+...+.+.++.+..|++..++.+. ....+....++.+.++.+...
T Consensus 265 qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~-------~~l~l~~~S~l~a~~L~lm~~- 336 (412)
T PF01770_consen 265 QVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW-------GELALGVFSLLQAGLLFLMSF- 336 (412)
T ss_pred HHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH-------HHHHHHHHHHHHHHHHHHHHH-
Confidence 9999998888764 123334457788888888888999999885555432 222222333333333333332
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhccc
Q 010350 432 LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLD 496 (512)
Q Consensus 432 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~ 496 (512)
..+-+...++.++..............-++.....+..|.++|+++.+..+-.. .+.-.+.|
T Consensus 337 t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQt---ilT~iV~d 398 (412)
T PF01770_consen 337 TGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQT---ILTLIVVD 398 (412)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHH---heEEEEEc
Confidence 223344456666666666666666666677778899999999998877664333 33334444
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.8e-13 Score=132.93 Aligned_cols=160 Identities=23% Similarity=0.077 Sum_probs=127.9
Q ss_pred hhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010350 129 DKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVL 208 (512)
Q Consensus 129 ~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (512)
....+..+.|.+.++.|.+..+.+++.+.+.++..++.++.|++.||+|||+.+.++.+...++..+.. ..++.+.+.+
T Consensus 235 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 313 (406)
T PRK11551 235 VLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALA-AAPSFAGMLL 313 (406)
T ss_pred HHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHH
Confidence 334445567787788899999999999999999999999999999999999999887666655554443 3445566677
Q ss_pred HHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccC-chHHHHHHHHHHHHHHHHHH
Q 010350 209 SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIFGLLGIAWFSGFK 287 (512)
Q Consensus 209 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~ 287 (512)
..++.|++.+...+...+++.|.+|+++|++.+|+.+....+|..++|.++|.+.++.+ |...+++.+...++..+..+
T Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 314 AGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 77888988888888889999999999999999999999999999999999999998754 55666665555555444444
Q ss_pred hh
Q 010350 288 IL 289 (512)
Q Consensus 288 ~~ 289 (512)
++
T Consensus 394 ~~ 395 (406)
T PRK11551 394 LL 395 (406)
T ss_pred HH
Confidence 44
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=128.25 Aligned_cols=165 Identities=28% Similarity=0.356 Sum_probs=143.0
Q ss_pred HHHHHHhhhhhhhhhhhhhccc-CCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCch-HHHHHHHHHHHHHHHHHHhh
Q 010350 123 FVICNMDKVNLSVAIIPMSHRF-GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK-VLQTGVLIWSLATALLPLLA 200 (512)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~~~~~~ 200 (512)
.+.............|.+.++. |.+..+.++..+...++..++.++.+++.||+|||+ .+..+.++..++..+.. ..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 262 (352)
T cd06174 184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA-LA 262 (352)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-Hh
Confidence 3344455566666777765554 999999999999999999999999999999999999 99999888888887764 44
Q ss_pred hhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHH
Q 010350 201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGI 280 (512)
Q Consensus 201 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~ 280 (512)
++.+.+++..++.|++.+...+...+++.|..|+++|++.+++.+....+|..++|.+.+.+.+..+|++.+++.+++.+
T Consensus 263 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~ 342 (352)
T cd06174 263 PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALAL 342 (352)
T ss_pred ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHH
Confidence 55678889999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHh
Q 010350 281 AWFSGFKI 288 (512)
Q Consensus 281 ~~~~~~~~ 288 (512)
+..+...+
T Consensus 343 i~~i~~~~ 350 (352)
T cd06174 343 LAALLLLL 350 (352)
T ss_pred HHHHHhee
Confidence 76665443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.1e-13 Score=134.58 Aligned_cols=159 Identities=19% Similarity=0.167 Sum_probs=126.5
Q ss_pred hhhhhhhhhhhhhcccCCCch----hhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHH
Q 010350 129 DKVNLSVAIIPMSHRFGWNSS----VAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP 204 (512)
Q Consensus 129 ~~~~~~~~~~~~~~~~g~s~~----~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (512)
....+.+.++.+.++.+.+.. ..+.+.++..++..++.+++|+++||+|||+.+..+.++..++.+... ..++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~ 312 (408)
T PRK09874 234 ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMS-FVQTPL 312 (408)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH-HhccHH
Confidence 334444555555444333332 245666777788889999999999999999999988887766665543 345557
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHH
Q 010350 205 GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFS 284 (512)
Q Consensus 205 ~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~ 284 (512)
.+++.+++.|++.+...+...+.+.+..+++++++.++++.....+|..+||.++|.+.++.||++.|++.+++.++..+
T Consensus 313 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~ 392 (408)
T PRK09874 313 QLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAV 392 (408)
T ss_pred HHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999899999999999999999999999999999999999999999988777655
Q ss_pred HHHh
Q 010350 285 GFKI 288 (512)
Q Consensus 285 ~~~~ 288 (512)
..++
T Consensus 393 ~~~~ 396 (408)
T PRK09874 393 YSWN 396 (408)
T ss_pred HHHH
Confidence 5444
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=130.14 Aligned_cols=165 Identities=16% Similarity=0.008 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHH
Q 010350 118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP 197 (512)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 197 (512)
...+..++.......+..+.|.+.+++|.+..++|++.++..++..++.++++++.||+|+|+.+.++.++..+...+.+
T Consensus 209 ~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~ 288 (382)
T TIGR00902 209 RFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG 288 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555566666677776678999999999999999999999999999999999999999999999888887765
Q ss_pred HhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHH-hhhhhHHHHHhhhhHHhccccCchHHHHHHH
Q 010350 198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVF-GGLSFGSVAGLLLAPPIIENLGWESVFYIFG 276 (512)
Q Consensus 198 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~ 276 (512)
..++.+.+++.+++.|+..+...+....++.+. |+++|++.+++++ ....+|.+++|.++|++.+++|+ ..|++.+
T Consensus 289 -~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~ 365 (382)
T TIGR00902 289 -AIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMA 365 (382)
T ss_pred -hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHH
Confidence 567778889999999999999999999999988 8899999999986 46789999999999999999996 5677777
Q ss_pred HHHHHHHHH
Q 010350 277 LLGIAWFSG 285 (512)
Q Consensus 277 ~~~~~~~~~ 285 (512)
+++++..+.
T Consensus 366 ~~~~~~~~~ 374 (382)
T TIGR00902 366 IIAAAAFFL 374 (382)
T ss_pred HHHHHHHHH
Confidence 776654433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-12 Score=128.62 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=125.0
Q ss_pred hhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 010350 134 SVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVL 212 (512)
Q Consensus 134 ~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l 212 (512)
....|. +.+++|.+..+.+++.+...+...++.++.|++.||+|||+++.++.++..+..... ...++.+.+++.+++
T Consensus 219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 297 (375)
T TIGR00899 219 IINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGL-AADNSLWALLMLQLL 297 (375)
T ss_pred HhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 334454 457789999999998888877778889999999999999999988776655544333 234556777788899
Q ss_pred HHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHhh
Q 010350 213 VGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL 289 (512)
Q Consensus 213 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 289 (512)
.|++.+...+....++.|..| ++++.++++++....+|..++|.++|.+.+..||+..|++.+++.++..+...++
T Consensus 298 ~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 373 (375)
T TIGR00899 298 NAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI 373 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence 999988888888888889887 4677999999999999999999999999999999999999888877666655544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=129.24 Aligned_cols=170 Identities=14% Similarity=0.098 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCch--HHHH------HH
Q 010350 116 IGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK--VLQT------GV 186 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~--~~~~------~~ 186 (512)
+....+..+........+..+.|. +.+++|.+..+.+++.+...++..++.+++|+++||+|||+ .... +.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 296 (399)
T TIGR00893 217 VWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAG 296 (399)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence 334444455555566666667776 45668999999999999999999999999999999999996 1111 11
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcccc
Q 010350 187 LIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL 266 (512)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 266 (512)
++.++...... ..++....+...++.+++.+ ..+...++++|.+|+++|++++++.+....+|..++|.+.|.+.+..
T Consensus 297 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~ 374 (399)
T TIGR00893 297 LVLSLLMFATN-YVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT 374 (399)
T ss_pred HHHHHHHHHhc-cchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC
Confidence 11111111111 11232333333444444444 78899999999999999999999999999999999999999999999
Q ss_pred C-chHHHHHHHHHHHHHHHHHH
Q 010350 267 G-WESVFYIFGLLGIAWFSGFK 287 (512)
Q Consensus 267 g-w~~~f~~~~~~~~~~~~~~~ 287 (512)
| |++.|++.+++.++..+..+
T Consensus 375 g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 375 GSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred CchhHHHHHHHHHHHHHHHHHH
Confidence 8 99999998887766554443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=134.78 Aligned_cols=150 Identities=16% Similarity=0.145 Sum_probs=117.5
Q ss_pred hhhhhhhhhh-cccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHh-hhhHHHHHHH
Q 010350 132 NLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL-AGFMPGLVLS 209 (512)
Q Consensus 132 ~~~~~~~~~~-~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 209 (512)
.....+|.+. +++|.+..+.+++.+...++..++.+++|+++||+|||+++.++.++..+..++.... ..+.+.+.+.
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLL 372 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3455677765 5899999999999999999999999999999999999999988876655554333222 2333344455
Q ss_pred HHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHH
Q 010350 210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIA 281 (512)
Q Consensus 210 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~ 281 (512)
.++.++......+...+++.+.+|+++|+++++++.....+|..+||+++|.+.+++||++.+.+.+....+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 555554444455677788999999999999999999999999999999999999999999888766654433
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-12 Score=129.06 Aligned_cols=172 Identities=13% Similarity=0.176 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhh-cccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHH
Q 010350 118 TTSLAFVICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL 196 (512)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 196 (512)
.+.+..++.......+..+.|.+. +++|+|..+.+++.+.+.++..++.++.|+++||++||+.+.....+..+...+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~ 288 (394)
T PRK03699 209 FLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLF 288 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 333344444444455666777755 6789999999999999999999999999999999999999988776655555444
Q ss_pred HHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHH
Q 010350 197 PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG 276 (512)
Q Consensus 197 ~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~ 276 (512)
. ..++...+.+..++.|++.+..++...++..+..+ +++++..+.......+|..++|.+.|++.+..||+..+++.+
T Consensus 289 ~-~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~ 366 (394)
T PRK03699 289 V-NTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTAN 366 (394)
T ss_pred H-HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhH
Confidence 2 34455566677788899888888887777777776 556788899888999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhhcc
Q 010350 277 LLGIAWFSGFKILQE 291 (512)
Q Consensus 277 ~~~~~~~~~~~~~~~ 291 (512)
++.++..+....+++
T Consensus 367 ~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 367 GLYAVVFVMCILLGF 381 (394)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887766555555444
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-12 Score=127.62 Aligned_cols=154 Identities=15% Similarity=0.139 Sum_probs=125.9
Q ss_pred hhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 010350 132 NLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRV 211 (512)
Q Consensus 132 ~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 211 (512)
....++|.+.++.|.+..+.+++.+...++..+++++.|++.||+|+|+++..+..+..++..... .. .......+
T Consensus 218 ~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~~-~~~~~~~~ 293 (381)
T PRK03633 218 SLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---SQ-AAMAPALF 293 (381)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---hh-HHHHHHHH
Confidence 344557777777899999999999999999999999999999999999999888777766554332 22 33445677
Q ss_pred HHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHhh
Q 010350 212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL 289 (512)
Q Consensus 212 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 289 (512)
+.|++.....|...+.+.|..|+++++...+.+....++|.++||.++|++.++.||++.|++.+.+.++..+..++.
T Consensus 294 l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 294 ILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence 888877778889999999999888888888888889999999999999999999999999999888776655444433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5e-12 Score=125.91 Aligned_cols=164 Identities=15% Similarity=0.041 Sum_probs=125.7
Q ss_pred HHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhh
Q 010350 123 FVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202 (512)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 202 (512)
+++..........+.|.+.+++|.+..+.+...+++.++..++.+++|++.||+|||+.+.++..+..++..+.....++
T Consensus 214 ~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~ 293 (393)
T PRK09705 214 FGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQ 293 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccch
Confidence 33344455556667777667789999999999999999999999999999999999999988877766665544323332
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHhhcC-ccchhhHHHHHHhhhhhHHHHHhhhhHHhccccC-chHHHHHHHHHHH
Q 010350 203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIFGLLGI 280 (512)
Q Consensus 203 ~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~~~f~~~~~~~~ 280 (512)
...+ ..++.|++.+...+.......+..+ ++++++.+++.+....++..++|.+.|++.+..| |...|++.++.++
T Consensus 294 ~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~ 371 (393)
T PRK09705 294 LPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVV 371 (393)
T ss_pred HHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 2222 2346688888888877777777774 5789999999999999999999999999999876 7777877776666
Q ss_pred HHHHHHHh
Q 010350 281 AWFSGFKI 288 (512)
Q Consensus 281 ~~~~~~~~ 288 (512)
+..+....
T Consensus 372 ~~~~~~~~ 379 (393)
T PRK09705 372 GLMIITLR 379 (393)
T ss_pred HHHHHHHH
Confidence 55444333
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-12 Score=130.60 Aligned_cols=172 Identities=14% Similarity=0.019 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhh-cccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc--CCchHH-HHHHHHHHHHH
Q 010350 118 TTSLAFVICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVL-QTGVLIWSLAT 193 (512)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--g~r~~~-~~~~~~~~~~~ 193 (512)
.+.+..+..+.....+..+.|.+. +++|++..+.++..+.+.++..++.+++|+++||+ ++|+.. ....+...+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~ 326 (434)
T PRK11663 247 LLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSV 326 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHH
Confidence 334444444555555666777755 67899999999999999999999999999999998 333332 22111111111
Q ss_pred HHHH-HhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHH
Q 010350 194 ALLP-LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF 272 (512)
Q Consensus 194 ~~~~-~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f 272 (512)
.... ....+...+.+..+..|++...........++|.+|+++|++++|+.+....+|.+++|.+.|++.++.||+..|
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f 406 (434)
T PRK11663 327 GSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFF 406 (434)
T ss_pred HHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHH
Confidence 1111 112222333344455555433333334556789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 010350 273 YIFGLLGIAWFSGFKIL 289 (512)
Q Consensus 273 ~~~~~~~~~~~~~~~~~ 289 (512)
++.++++++..+.....
T Consensus 407 ~~~~~~~~~~~~~~~~~ 423 (434)
T PRK11663 407 VVISIAAGISALLLLPF 423 (434)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99988877665544433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.6e-13 Score=133.93 Aligned_cols=177 Identities=12% Similarity=0.024 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhh-cccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc--CCchHHH-HHHHHHHH
Q 010350 116 IGTTSLAFVICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVLQ-TGVLIWSL 191 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--g~r~~~~-~~~~~~~~ 191 (512)
++.+.+..++.+........++|.+. ++.|++..+.+++.+++.++..++.+++|+++||+ +||+... ....+..+
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~ 334 (452)
T PRK11273 255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI 334 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 33344444444444455666778755 45799999999999999999999999999999999 5554332 22222223
Q ss_pred HHHHHHHh-hhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHH-HhhhhHHhccccCch
Q 010350 192 ATALLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVA-GLLLAPPIIENLGWE 269 (512)
Q Consensus 192 ~~~~~~~~-~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~gw~ 269 (512)
+..+.... ..+....+++.++.|.+..........+..|.+|+++|++++|+.+....+|..+ +|.++|++.++.||+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~ 414 (452)
T PRK11273 335 ATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD 414 (452)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcch
Confidence 32222111 2233344455555665543333344456779999999999999999888888654 799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC
Q 010350 270 SVFYIFGLLGIAWFSGFKILQEG 292 (512)
Q Consensus 270 ~~f~~~~~~~~~~~~~~~~~~~~ 292 (512)
+.|++.++.+++.++....+...
T Consensus 415 ~~f~~~~~~~~~~~~~~~~~~~~ 437 (452)
T PRK11273 415 GGFMVMIGGSILAVILLIVVMIG 437 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999888777665555544433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.45 E-value=5e-13 Score=133.05 Aligned_cols=163 Identities=15% Similarity=0.135 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhh-cccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHH-HH
Q 010350 118 TTSLAFVICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT-AL 195 (512)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~-~~ 195 (512)
...+..+...........+.|.+. +++|.+..+.++..+...++..++.+++|+++||+|||+.+..+..+..+.. .+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 302 (394)
T TIGR00883 223 LGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPL 302 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 333444444555555666677754 7789999999999999999999999999999999999998876554443333 12
Q ss_pred HHHh--hhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHH-HhhhhhHHHHHhhhhHHhccccC-chHH
Q 010350 196 LPLL--AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFV-FGGLSFGSVAGLLLAPPIIENLG-WESV 271 (512)
Q Consensus 196 ~~~~--~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~g-w~~~ 271 (512)
.... .++.+.+++..++.|++.+...+...+++.|.+|+++|++++++. .....+|..++|.++|.+.++.| |++.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~ 382 (394)
T TIGR00883 303 LMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAI 382 (394)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhH
Confidence 1112 234556667788889988888899999999999999999999984 55567899999999999999988 8888
Q ss_pred HHHHHHHHH
Q 010350 272 FYIFGLLGI 280 (512)
Q Consensus 272 f~~~~~~~~ 280 (512)
++...+..+
T Consensus 383 ~~~~~~~~l 391 (394)
T TIGR00883 383 GYYLAALAL 391 (394)
T ss_pred HHHHHHHHH
Confidence 777665443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.8e-12 Score=126.90 Aligned_cols=156 Identities=20% Similarity=0.197 Sum_probs=127.9
Q ss_pred hhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 010350 130 KVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS 209 (512)
Q Consensus 130 ~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (512)
......+.|.+.++.|.+ +.++..+.+.++..++++++|++.||+|+|+.+..+..+.+++.++.. ..++.+.++++
T Consensus 232 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 308 (392)
T PRK12382 232 FAVIGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLW-LAPTAWVALAG 308 (392)
T ss_pred HhHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHH-HcccHHHHHHH
Confidence 334445555555566655 356667778888889999999999999999999988888777776654 44556777888
Q ss_pred HHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHh
Q 010350 210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI 288 (512)
Q Consensus 210 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 288 (512)
.++.|++.+...+...+.+.+.+++++|++++|+++....+|..++|.+++++.++.||++.|++.+++.++..+...+
T Consensus 309 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 309 AALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 9999999998888888889999999999999999999999999999999999999999999999988877766555443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.6e-13 Score=134.65 Aligned_cols=165 Identities=18% Similarity=0.161 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc--CCchHHHHH--HHHHHHHH
Q 010350 118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVLQTG--VLIWSLAT 193 (512)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--g~r~~~~~~--~~~~~~~~ 193 (512)
...+..++..........++|.+.+++|.+..+.+++.++..++..+++++.|+++||. ++|+...++ .++.+++.
T Consensus 245 ~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ 324 (455)
T TIGR00892 245 VYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTH 324 (455)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHH
Confidence 33334444445545555667777778899999999999999999999999999999983 344433333 23333333
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcccc-CchHHH
Q 010350 194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVF 272 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-gw~~~f 272 (512)
++. ...++++.+++.+++.|++.+...+...+++.|.+|++++++.+|+++....+|.++||.++|.+.+.. +|++.|
T Consensus 325 ll~-~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f 403 (455)
T TIGR00892 325 LLC-ALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIF 403 (455)
T ss_pred HHH-HHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHH
Confidence 333 345666778889999999999999999999999999999999999999999999999999999999887 599999
Q ss_pred HHHHHHHHHHH
Q 010350 273 YIFGLLGIAWF 283 (512)
Q Consensus 273 ~~~~~~~~~~~ 283 (512)
++.+++.++..
T Consensus 404 ~~~~~~~li~~ 414 (455)
T TIGR00892 404 YASGSIVVSAG 414 (455)
T ss_pred HHhhHHHHHHH
Confidence 99887765543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-12 Score=131.50 Aligned_cols=179 Identities=17% Similarity=0.112 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHH
Q 010350 113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 192 (512)
++.+....+..+........+..+.|.+.+++|.+..+.++......++..++.+++|+++||+|||+.+.++.++.+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 362 (481)
T TIGR00879 283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAIC 362 (481)
T ss_pred HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 44455555555555555556667788888889999988899999999999999999999999999999999887777776
Q ss_pred HHHHHHhh----h------hHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHh
Q 010350 193 TALLPLLA----G------FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI 262 (512)
Q Consensus 193 ~~~~~~~~----~------~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 262 (512)
.++..... . ....+....++.+.......+....++.|.+|+++|++++++......+|.+++|.+.+.+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~ 442 (481)
T TIGR00879 363 LFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTM 442 (481)
T ss_pred HHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65554211 1 2222333333333333334466677789999999999999999999999999999999999
Q ss_pred ccccCchHHHHHHHHHHHHHHHHHHh-hcc
Q 010350 263 IENLGWESVFYIFGLLGIAWFSGFKI-LQE 291 (512)
Q Consensus 263 ~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~ 291 (512)
.++.+|++.|++.++++++..+..++ .+|
T Consensus 443 ~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~ 472 (481)
T TIGR00879 443 LESIGVGGVFIFFGGLNVLGLIFVYFFLPE 472 (481)
T ss_pred HHhcCccceehhHHHHHHHHHHHHheeccc
Confidence 99999999999988887766555443 444
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-12 Score=127.54 Aligned_cols=167 Identities=14% Similarity=0.121 Sum_probs=126.1
Q ss_pred HHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHH-HHHHHHHHHHHHHHHh
Q 010350 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQ-TGVLIWSLATALLPLL 199 (512)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~~~~~~ 199 (512)
+..++..........+.|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+...++.......
T Consensus 229 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~ 308 (402)
T TIGR00897 229 MVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYI 308 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556667788887889999999999999999999999999999999999988764 3333333332222111
Q ss_pred ----hhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHH
Q 010350 200 ----AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIF 275 (512)
Q Consensus 200 ----~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~ 275 (512)
.++.+..++..++.|++.+...+ ....+.+..| ++|++++|+.+....+|..++|.+++.+.+..||+..+++.
T Consensus 309 ~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~ 386 (402)
T TIGR00897 309 PQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIF 386 (402)
T ss_pred HHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 23445666788888888776544 4456667554 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 010350 276 GLLGIAWFSGFKIL 289 (512)
Q Consensus 276 ~~~~~~~~~~~~~~ 289 (512)
+++.++..+...++
T Consensus 387 a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 387 AALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHHHh
Confidence 88877665555443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.2e-12 Score=120.51 Aligned_cols=176 Identities=17% Similarity=0.133 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHH
Q 010350 113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 192 (512)
.+++..+....+...-....++..-|.+++..|+|.+.++++.-+|.++..+|.++.|+++|| +.|+.+.....+..+.
T Consensus 211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~ 289 (394)
T COG2814 211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALA 289 (394)
T ss_pred chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHH
Confidence 344444444443333444555666777888899999999999999999999999999999999 9999999988888888
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHH
Q 010350 193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF 272 (512)
Q Consensus 193 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f 272 (512)
.+.+.+..++.+..++.-++.|+............+++ ..++.+..+.+++....++|..+|..++|.+.+++|+....
T Consensus 290 ~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~ 368 (394)
T COG2814 290 LLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATG 368 (394)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 88877777877778888888888888777777777777 44589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 010350 273 YIFGLLGIAWFSGFKILQ 290 (512)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~ 290 (512)
++.+++.++.++..+...
T Consensus 369 ~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 369 WVGAALLLLALLLALLSA 386 (394)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999998877766655443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-12 Score=129.44 Aligned_cols=161 Identities=19% Similarity=0.119 Sum_probs=131.8
Q ss_pred hhhhhhhhhhcc-cCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 010350 132 NLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSR 210 (512)
Q Consensus 132 ~~~~~~~~~~~~-~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 210 (512)
.+....|.+.++ +|.+..+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++.. ..++...+.++.
T Consensus 241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 319 (417)
T PRK10489 241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFG-LMPMWILAVLCL 319 (417)
T ss_pred hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHH-ccchHHHHHHHH
Confidence 344556766555 899999999999999999999999999999998888888888777777665553 456666777888
Q ss_pred HHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHH-HHHHHhh
Q 010350 211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW-FSGFKIL 289 (512)
Q Consensus 211 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~-~~~~~~~ 289 (512)
++.|++.+...+...+++.+..|++.|++++|+++....+|..+||.+.|.+.+..|++..+++.+++.++. .+....+
T Consensus 320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 399 (417)
T PRK10489 320 ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVL 399 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhc
Confidence 899998887777888899999999999999999999999999999999999999999998888877766554 4444444
Q ss_pred ccCC
Q 010350 290 QEGE 293 (512)
Q Consensus 290 ~~~~ 293 (512)
++.+
T Consensus 400 ~~~~ 403 (417)
T PRK10489 400 GELR 403 (417)
T ss_pred cccc
Confidence 5443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-12 Score=127.48 Aligned_cols=194 Identities=16% Similarity=0.076 Sum_probs=147.4
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchH
Q 010350 102 YWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKV 181 (512)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~ 181 (512)
-++.+++...|+...+.+.+....+..+.+.+..+...+.++.|++..++-++.........+..+++..+.||+|||+.
T Consensus 258 l~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpL 337 (485)
T KOG0569|consen 258 LRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPL 337 (485)
T ss_pred HHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 34445555566776777777776676777777778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh---hhH--H---HHHHHHHHHHhhcc-cchhhHHHHHHhhcCccchhhHHHHHHhhhhhHH
Q 010350 182 LQTGVLIWSLATALLPLLA---GFM--P---GLVLSRVLVGIGEG-VSPSAATDLIARSIPLEERSRAVSFVFGGLSFGS 252 (512)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~---~~~--~---~~~~~r~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 252 (512)
++++..++.+..+++.... +.. + ..+++.++..++.+ +..|..+-+.+|.+|++.|+.++++......+..
T Consensus 338 ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~ 417 (485)
T KOG0569|consen 338 LLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSN 417 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHH
Confidence 9999888777766554321 111 1 12344444433333 2347888899999999999999999999999999
Q ss_pred HHHhhhhHHhccccCchHHHHHHHHHHHHH-HHHHHhhccCCCCC
Q 010350 253 VAGLLLAPPIIENLGWESVFYIFGLLGIAW-FSGFKILQEGETSN 296 (512)
Q Consensus 253 ~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~-~~~~~~~~~~~~~~ 296 (512)
.+-......+.+.+|- +.|++..+.++++ +..+..+||++.+.
T Consensus 418 fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~ 461 (485)
T KOG0569|consen 418 FIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRT 461 (485)
T ss_pred HHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence 9999999888888887 6666666666554 45666778876543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=133.30 Aligned_cols=174 Identities=12% Similarity=0.049 Sum_probs=115.1
Q ss_pred HHHHHHHHhhhhhhhhhhhhhcccCCCchhhHH------------HHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHH
Q 010350 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGL------------VQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLI 188 (512)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~------------~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 188 (512)
...+...+..+....+.|.+.++.|.+..+.+. ...+..++..++.+++++++||+|||++++++.++
T Consensus 295 ~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~ 374 (502)
T TIGR00887 295 GSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFI 374 (502)
T ss_pred HHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHH
Confidence 333333334444455577777788876543221 22334455666888999999999999999888877
Q ss_pred HHHHHHHHHHhhh---hHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccc
Q 010350 189 WSLATALLPLLAG---FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN 265 (512)
Q Consensus 189 ~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 265 (512)
.+++..+.+.... ....+...-+...++.....+..+.+.+|.+|.+.|++++|+.+....+|.+++|.+.+++.+.
T Consensus 375 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 454 (502)
T TIGR00887 375 LTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH 454 (502)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcc
Confidence 7766655543221 1111221212222222334456777889999999999999999999999999999999998873
Q ss_pred ----------cCchHHHHHHHHHHHHHHHHHHhhccCCC
Q 010350 266 ----------LGWESVFYIFGLLGIAWFSGFKILQEGET 294 (512)
Q Consensus 266 ----------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~ 294 (512)
.++...|++.+++.++..+..+++||++.
T Consensus 455 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~ 493 (502)
T TIGR00887 455 GDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKG 493 (502)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHheEeccCCC
Confidence 34566778877777666555566676543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=129.60 Aligned_cols=143 Identities=11% Similarity=0.113 Sum_probs=116.3
Q ss_pred hhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 010350 132 NLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSR 210 (512)
Q Consensus 132 ~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 210 (512)
......|. +.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+.++.++..+.........++.+.+.+..
T Consensus 256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (405)
T TIGR00891 256 PIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGL 335 (405)
T ss_pred hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 34444554 55678999999999999999999999999999999999999998887665333332222334445566666
Q ss_pred HHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccC-chHHHHH
Q 010350 211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYI 274 (512)
Q Consensus 211 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~~~f~~ 274 (512)
++.|++.+...+....++.|.+|+++|++++|+.+....+|..++|+++|++.++.| |+..+..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 336 FFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 778887777778888999999999999999999999999999999999999999988 8876655
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.8e-12 Score=126.29 Aligned_cols=165 Identities=15% Similarity=0.112 Sum_probs=118.6
Q ss_pred HHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHh--h-hh
Q 010350 127 NMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL--A-GF 202 (512)
Q Consensus 127 ~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~-~~ 202 (512)
.........+.|. +.+++|.+......+..+..+...++.+++|+++||+|||+++..+.++..++....... . ++
T Consensus 263 ~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (438)
T PRK09952 263 LLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSI 342 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence 3344444555555 456788888776666666667778888999999999999999988866654443322111 1 22
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhh-hhhHHHHHhhhhHHhcccc--CchHHHHHHHHHH
Q 010350 203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGG-LSFGSVAGLLLAPPIIENL--GWESVFYIFGLLG 279 (512)
Q Consensus 203 ~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~l~~~~--gw~~~f~~~~~~~ 279 (512)
...+++..++.+++.+...+..+++++|.+|.+.|+.+.++.... ..+|+.++|.+.+++.+.. +|+..+.+.++.+
T Consensus 343 ~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~ 422 (438)
T PRK09952 343 FWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGC 422 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 334455566778888877888899999999999999999985544 4589999999999998743 4888888877777
Q ss_pred HHHHHHHHhhcc
Q 010350 280 IAWFSGFKILQE 291 (512)
Q Consensus 280 ~~~~~~~~~~~~ 291 (512)
++..+..+.+++
T Consensus 423 ~i~~v~~~~~~~ 434 (438)
T PRK09952 423 LISAMTALLMKD 434 (438)
T ss_pred HHHHHHHHHccc
Confidence 766666555554
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.9e-11 Score=121.98 Aligned_cols=156 Identities=12% Similarity=0.099 Sum_probs=120.0
Q ss_pred hhhhhcccCCCchhhHHHHH-HHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHH
Q 010350 137 IIPMSHRFGWNSSVAGLVQS-SFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL---PLLAGFMPGLVLSRVL 212 (512)
Q Consensus 137 ~~~~~~~~g~s~~~~~~~~s-~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~r~l 212 (512)
.|.+.+++|++..+++++.. ...++.+++.+++|+++||+|+|+.+.++.++.++..++. +...++...+.+..++
T Consensus 246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l 325 (491)
T PRK11010 246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFF 325 (491)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 34456678999999999974 6668999999999999999999988877655544433222 1212333444555666
Q ss_pred HHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHhhccC
Q 010350 213 VGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEG 292 (512)
Q Consensus 213 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~ 292 (512)
..++.+...+...++..+..+++.+++.+++.++...+|.++++.++|++.+..||+..|.+.+++++..++....++++
T Consensus 326 ~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 326 ENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555555667788889999999999999999999999999999999999999999999999888888776666665543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.5e-12 Score=123.49 Aligned_cols=157 Identities=15% Similarity=0.132 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCC-chHHHH-HHHHHHHH
Q 010350 116 IGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG-RKVLQT-GVLIWSLA 192 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~-r~~~~~-~~~~~~~~ 192 (512)
+..+.+..+........+..+.|. +.+++|.+..+.++..+.+.++..++.++.|++.||..+ |+.... ......+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~ 297 (379)
T TIGR00881 218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIV 297 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 334444444445555555666666 456789999999999999999999999999999998643 332222 11111111
Q ss_pred HHHHHHh--hhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchH
Q 010350 193 TALLPLL--AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES 270 (512)
Q Consensus 193 ~~~~~~~--~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~ 270 (512)
....... ..+....+++.++.|+......+....++.|.+|+++|+++.|+.+....+|..++|.+.|.+.++.||++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 377 (379)
T TIGR00881 298 SLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAG 377 (379)
T ss_pred HHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccc
Confidence 1111111 23334566667777877666666777888999999999999999999999999999999999999999987
Q ss_pred HH
Q 010350 271 VF 272 (512)
Q Consensus 271 ~f 272 (512)
.|
T Consensus 378 ~f 379 (379)
T TIGR00881 378 AF 379 (379)
T ss_pred cC
Confidence 64
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.9e-11 Score=119.13 Aligned_cols=153 Identities=17% Similarity=0.098 Sum_probs=123.3
Q ss_pred HhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010350 128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV 207 (512)
Q Consensus 128 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (512)
.....+....|.+.++.|.+..+.|.+.++..++..+..++.|++.||+|+|+.+..+.++.+++.++.+ ..++.+.++
T Consensus 219 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~ 297 (382)
T PRK11128 219 GSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMG-STTALPWLI 297 (382)
T ss_pred HHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-hhhhHHHHH
Confidence 3333444455666577999999999999999999999999999999999999999999888877766654 456778888
Q ss_pred HHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHH-hhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHH
Q 010350 208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVF-GGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF 283 (512)
Q Consensus 208 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~ 283 (512)
+..++.|++.+...+....++.+. +++++++.++.+. ....+|..+||.++|.+.+.+|+ ..|+..+++.++.+
T Consensus 298 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 298 VIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 899999999998888888888886 5667788899886 55678889999999999999987 46666666655443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-11 Score=123.65 Aligned_cols=150 Identities=19% Similarity=0.154 Sum_probs=118.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhc-ccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHH
Q 010350 119 TSLAFVICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP 197 (512)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 197 (512)
..+..++............|.+.+ .+|.+..+.++......++..++.++++++.||+|||+++..+.++.++...+..
T Consensus 266 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~ 345 (471)
T PRK10504 266 GLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFM 345 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 334444444445555556776555 5899999999999988888888889999999999999999988887777665554
Q ss_pred Hhh--hhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCc
Q 010350 198 LLA--GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW 268 (512)
Q Consensus 198 ~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw 268 (512)
... ++.+.+.+..++.|++.+...+....++.+..|+++++.++++.+....+|..+|+.++|.+.+..|+
T Consensus 346 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 346 LVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 332 33334455677888888888888889999999999999999999999999999999999998876654
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-11 Score=122.98 Aligned_cols=148 Identities=14% Similarity=0.062 Sum_probs=105.9
Q ss_pred HHHHHHHhhhhhhhhhhhhhc-ccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHH-HHH-
Q 010350 122 AFVICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL-LPL- 198 (512)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-~~~- 198 (512)
..+........+..+.|.+.+ .+|++..+.++....+.++..++.+++|+++||+|||+++..+.++..+.... ...
T Consensus 246 ~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 325 (434)
T PRK15075 246 MVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWL 325 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455566677787654 48999999999988999999999999999999999999988765443322211 111
Q ss_pred -hhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhh-hhHHHHHhhhhHHhccccCch
Q 010350 199 -LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGL-SFGSVAGLLLAPPIIENLGWE 269 (512)
Q Consensus 199 -~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~l~~~~gw~ 269 (512)
..++...+.+..++.|++.+...+....++.|.+|++.|+.++++..... .+++.++|.+.+++.++.|++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 326 VAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 12222334444555666666666667788999999999999999965544 456788999999999988864
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4e-11 Score=122.92 Aligned_cols=168 Identities=11% Similarity=-0.021 Sum_probs=122.9
Q ss_pred HHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhh-h-
Q 010350 125 ICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG-F- 202 (512)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~- 202 (512)
....+.+....+.|.+.++.|.+.....+......+...++.++.++++||+|||++++.+.++.+++.++++.... +
T Consensus 282 ~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~ 361 (479)
T PRK10077 282 QQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA 361 (479)
T ss_pred HHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCc
Confidence 33344455556678888889998887788877888888999999999999999999999999888887766543221 1
Q ss_pred H-HHHHHHHHHHHhhccc-chhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHH------hccccCchHHHHH
Q 010350 203 M-PGLVLSRVLVGIGEGV-SPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP------IIENLGWESVFYI 274 (512)
Q Consensus 203 ~-~~~~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~------l~~~~gw~~~f~~ 274 (512)
. .....+.++.+++.+. ..+....+++|.+|+++|++++|+......+|.++++.+.+. +.+..+|++.|++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 441 (479)
T PRK10077 362 PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWI 441 (479)
T ss_pred ccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHH
Confidence 1 1223334444444443 336678999999999999999999999999998888666554 4467899999999
Q ss_pred HHHHHHHHHHHHHh-hccC
Q 010350 275 FGLLGIAWFSGFKI-LQEG 292 (512)
Q Consensus 275 ~~~~~~~~~~~~~~-~~~~ 292 (512)
.++++++.++..++ .||+
T Consensus 442 ~~~~~~~~~~~~~~~~~e~ 460 (479)
T PRK10077 442 YGCMGVLAALFMWKFVPET 460 (479)
T ss_pred HHHHHHHHHHHHHhccccC
Confidence 88877666555443 4443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=121.85 Aligned_cols=133 Identities=23% Similarity=0.328 Sum_probs=115.5
Q ss_pred hhhhhhhcc-cCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 010350 135 VAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLV 213 (512)
Q Consensus 135 ~~~~~~~~~-~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 213 (512)
...|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|||+.+..+.++.+++..+.....++.+.+++..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI 311 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 566776554 8999999999999999999999999999999999999999887777776665543332367788889999
Q ss_pred HhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccC
Q 010350 214 GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG 267 (512)
Q Consensus 214 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 267 (512)
|++.+...+...+++.|..|+++|++.+|+.+....+|..++|.++|.+.+++|
T Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999988654
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=124.98 Aligned_cols=149 Identities=16% Similarity=0.188 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhc-ccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHH
Q 010350 119 TSLAFVICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP 197 (512)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 197 (512)
+.+..++............+.+.+ .++ +..+.+++.++..++..++.+++++++||+|+|+++.++.++.+++.++..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~ 305 (437)
T TIGR00792 227 LCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFF 305 (437)
T ss_pred HHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433 344 566778888888999999999999999999999999999888777766654
Q ss_pred HhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcC-------ccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCc
Q 010350 198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP-------LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW 268 (512)
Q Consensus 198 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw 268 (512)
...++.+.+++..++.|++.+...+...++++|..+ ++.+|...|+++....+|..+++.+.|.+.+..||
T Consensus 306 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 306 FAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 433455667778888999999999999999998865 45679999999999999999999999999887766
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.9e-11 Score=118.83 Aligned_cols=146 Identities=13% Similarity=0.058 Sum_probs=108.4
Q ss_pred hhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHH
Q 010350 132 NLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG-FMPGLVLSR 210 (512)
Q Consensus 132 ~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r 210 (512)
.+...+|.+.++.|.+..+.+.+.++..++..++.+++|++.||+|||+.+..+.++..+..++...... ....+.+..
T Consensus 249 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (426)
T PRK12307 249 PIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACL 328 (426)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 3455677777778999999999999999999999999999999999999998887766555443322222 212222222
Q ss_pred HHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHH
Q 010350 211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL 277 (512)
Q Consensus 211 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~ 277 (512)
+..+++.....+..+.++.|.+|+++|++++|+......+|..++|.+.|++.++.|+....++...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~ 395 (426)
T PRK12307 329 FGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVA 395 (426)
T ss_pred HHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 2233333334456667889999999999999999999999999999999999999887665444333
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-11 Score=115.33 Aligned_cols=177 Identities=22% Similarity=0.200 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 192 (512)
+..+.+++.|+..+-+...++..+|. +.++||.+..+.|...+.+.+...+..+.+|+++||+|.+|++.+....++++
T Consensus 218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~ 297 (417)
T COG2223 218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALA 297 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHH
Confidence 34456777777777777778888887 77889999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHhh------hhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcccc
Q 010350 193 TALLPLLA------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL 266 (512)
Q Consensus 193 ~~~~~~~~------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 266 (512)
..+..... .+....++.-+..+++.+.-......++..+++ ++-|.+.|+..+...+|+..-|...+...+..
T Consensus 298 ~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t 376 (417)
T COG2223 298 AALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT 376 (417)
T ss_pred HHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhc
Confidence 87765543 233333333333444444444455667777777 58899999999999999999999999999988
Q ss_pred C-chHHHHHHHHHHHHHHHHHHhhcc
Q 010350 267 G-WESVFYIFGLLGIAWFSGFKILQE 291 (512)
Q Consensus 267 g-w~~~f~~~~~~~~~~~~~~~~~~~ 291 (512)
| +..+|++...+.+++.+.......
T Consensus 377 g~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 377 GSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 999999999888887766555443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-10 Score=116.47 Aligned_cols=181 Identities=16% Similarity=0.108 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhh-hhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCc--hHHHHHHHHH
Q 010350 113 YKLIGTTSLAFVICNMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGR--KVLQTGVLIW 189 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~~ 189 (512)
.+.+....+++++..-+.+.+... ...-.+++|++..+...+.-+..+..++|.+++|++.||+|.| ++++++++++
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~ 359 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW 359 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 344555555655554444444444 4445668999999999999999999999999999999999999 8988888877
Q ss_pred HHHHHHHHH-------hhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHh
Q 010350 190 SLATALLPL-------LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI 262 (512)
Q Consensus 190 ~~~~~~~~~-------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 262 (512)
.+..+...+ -.++.+.+.+.-++.|++.|+.++..-++.+++.|+++.+..+|++....-..+.+||++.|.+
T Consensus 360 ~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i 439 (477)
T PF11700_consen 360 IIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLI 439 (477)
T ss_pred HHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544332 0344578899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC-chHHHHHHHHHHHHHHHHHHhhccCC
Q 010350 263 IENLG-WESVFYIFGLLGIAWFSGFKILQEGE 293 (512)
Q Consensus 263 ~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~~~ 293 (512)
.+..| -|+.+....++.++.+++..+++.++
T Consensus 440 ~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~ 471 (477)
T PF11700_consen 440 TDATGSQRYGFLFLLVLFLIGLILLFFVDVEK 471 (477)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHhhccchh
Confidence 99876 88998888887777777776665544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=123.10 Aligned_cols=143 Identities=20% Similarity=0.186 Sum_probs=114.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHH
Q 010350 119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL 198 (512)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 198 (512)
+.+..++..........+.|.+.+++|.+..+.++..+...++..++.+++|+++||+|||+...... +.++...+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~ 333 (398)
T TIGR00895 255 LWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLL-LGAVFAVLVGS 333 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH-HHHHHHHHHHH
Confidence 33334444455555666778888899999999999999999999999999999999999995544443 33343333333
Q ss_pred hhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHh
Q 010350 199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI 262 (512)
Q Consensus 199 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 262 (512)
...+...+++..++.|++.+...+...+++.|.+|+++|++++|+......+|..++|.++|++
T Consensus 334 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 334 TLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 2445567778889999999999999999999999999999999999999999999999999876
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=111.31 Aligned_cols=161 Identities=11% Similarity=0.061 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhc---ccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSH---RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS 190 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 190 (512)
+.+.+..+..|+.......+..+.+.+.+ .+|++.++.++..+.+..++.++.++.+++.||+|+|+++.++.++..
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~ 219 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAV 219 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 33444444444444345556666666553 369999999999999999999999999999999999999988877766
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchH
Q 010350 191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES 270 (512)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~ 270 (512)
++.++.. ..+. ......-++.|++.+..+|...+...+..++ +.+.+.++. .+..+|.+++|++.|.+.+..|.++
T Consensus 220 ~~~~l~~-~~~~-~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~ 295 (310)
T TIGR01272 220 LLSIGAA-LTHG-YVAMWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQL 295 (310)
T ss_pred HHHHHHH-HcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchH
Confidence 6654443 3333 2233456689999999999999999888874 455666665 5677999999999999999999998
Q ss_pred HHHHHHHH
Q 010350 271 VFYIFGLL 278 (512)
Q Consensus 271 ~f~~~~~~ 278 (512)
.|++..+.
T Consensus 296 a~~v~~~~ 303 (310)
T TIGR01272 296 AFALPVPC 303 (310)
T ss_pred HHHHHHHH
Confidence 88754433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.8e-11 Score=121.41 Aligned_cols=168 Identities=13% Similarity=0.032 Sum_probs=111.3
Q ss_pred HHHHhhhhhhhhhhhhh-cccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHH--HHHHHHh--
Q 010350 125 ICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA--TALLPLL-- 199 (512)
Q Consensus 125 ~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~--~~~~~~~-- 199 (512)
+.+........+.|.+. +..|.+..+.++..+++.++..++.+++|+++||+++++....+..+..+. ..+....
T Consensus 262 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (438)
T TIGR00712 262 FVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNP 341 (438)
T ss_pred HHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcC
Confidence 33334444556677755 457999999999999999999999999999999997543222232221111 1111111
Q ss_pred hhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhH-HHHHhhhhHHhccccCchHHHHHHHHH
Q 010350 200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFG-SVAGLLLAPPIIENLGWESVFYIFGLL 278 (512)
Q Consensus 200 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~~~~~l~~~~gw~~~f~~~~~~ 278 (512)
..+.+...+..++.|++.............|.+|+++|+.++|+.+....+| .+++|.+.|.+.++.||.+.|++.+++
T Consensus 342 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~ 421 (438)
T TIGR00712 342 AGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG 421 (438)
T ss_pred CCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHH
Confidence 1222333444555665543333333456779999999999999998888776 578999999999999999999987777
Q ss_pred HHHHHHH-HHhhccC
Q 010350 279 GIAWFSG-FKILQEG 292 (512)
Q Consensus 279 ~~~~~~~-~~~~~~~ 292 (512)
.++..+. .+.++|+
T Consensus 422 ~~~~~~~~~~~~~~~ 436 (438)
T TIGR00712 422 SILAVILLIVVMIGE 436 (438)
T ss_pred HHHHHHHHHHHHhhc
Confidence 6555444 3444443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-08 Score=100.34 Aligned_cols=370 Identities=13% Similarity=0.040 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcccC-CCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHH
Q 010350 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFG-WNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA 194 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 194 (512)
...+.+..++...+.-++..+.+.+..+.. -+.--.+...-.-.+..+++.+..|.+.||..|.++...+.++--+...
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~ 83 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA 83 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence 445666777777777778888877655552 2444444444455566678888899999999999988776543222221
Q ss_pred ----HHHH-hh--h-----h--HHHHHHHHHHHHhhcccchhhHHHH--HHhhc------CccchhhHHHHHHhhhhhHH
Q 010350 195 ----LLPL-LA--G-----F--MPGLVLSRVLVGIGEGVSPSAATDL--IARSI------PLEERSRAVSFVFGGLSFGS 252 (512)
Q Consensus 195 ----~~~~-~~--~-----~--~~~~~~~r~l~G~~~~~~~~~~~~~--~~~~~------~~~~r~~~~~~~~~~~~~g~ 252 (512)
+... .. . . ...+++.-.+.|....... .+... =-||. +++.+.+.++...-.--+..
T Consensus 84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las-~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ck 162 (432)
T PF06963_consen 84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLAS-IANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCK 162 (432)
T ss_pred HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHH-hhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHH
Confidence 1111 10 0 1 1112222222222211111 11111 11332 34556677777777788899
Q ss_pred HHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHhh--------ccCCCCCCCCCCcchhhhh---hhhhhhhhHHhhc
Q 010350 253 VAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL--------QEGETSNGATLAPRSNYIN---MKKSLSASLEEMG 321 (512)
Q Consensus 253 ~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 321 (512)
+++|++.|.+....+.+...++.++..++..+.-+++ |+-..++..+..+..+... .++......+..+
T Consensus 163 llaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (432)
T PF06963_consen 163 LLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSILKRLW 242 (432)
T ss_pred HHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhhHHHHHH
Confidence 9999999999998999988888887776654432222 1111111111000000000 0000000000000
Q ss_pred C--CCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHH
Q 010350 322 E--SLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL 399 (512)
Q Consensus 322 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~ 399 (512)
+ ......|+..++.+.+.. .++..+.++....+...+..|+... |+++...|..-+...+.++.+..+.+++.+|+
T Consensus 243 ~~~~~~~~~w~~Y~~q~vfla-s~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri 320 (432)
T PF06963_consen 243 NPLRTIIRGWRTYFRQPVFLA-SFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI 320 (432)
T ss_pred HHHHHHhccHHHHHhCHHHHH-HHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 001235666666665544 4444444445566778888899876 99999999999999999999999999999999
Q ss_pred HHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCC-hHHHHHHHHHHH-----HHHHhhhhhhhhHhhhcCcchhHHHH
Q 010350 400 IATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLP-HWEIVGILTAGL-----ALSSFALSGLYCTHQDISPEYASILL 473 (512)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~g~~~ 473 (512)
|..+- ..+....=......+...... .+.+ ...-...++.|+ +.-++-........+.+|+++||+..
T Consensus 321 Glvr~-----G~~~l~~q~~~L~~~v~~~~~-~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~ 394 (432)
T PF06963_consen 321 GLVRA-----GLWSLWWQWVCLALCVVSFWA-PGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVS 394 (432)
T ss_pred cchhh-----HHHHHHHHHHHHHHHHHHHhc-CCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHH
Confidence 85310 111111111112222222222 2222 112222222233 33334455556677789999999999
Q ss_pred HHHHhhhchhhhhHHhhhhhcc
Q 010350 474 GITNTVGAVPGIVGVALTGYLL 495 (512)
Q Consensus 474 g~~~~~~~lg~~i~p~i~G~l~ 495 (512)
|+.+..+++...+.-.+ +.+.
T Consensus 395 gvq~sl~~lf~ll~~~~-~ii~ 415 (432)
T PF06963_consen 395 GVQNSLQSLFELLSFVL-TIIF 415 (432)
T ss_pred HHHHHHHHHHHHHHHHH-Hhcc
Confidence 99999999877764433 4444
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=117.03 Aligned_cols=163 Identities=15% Similarity=0.080 Sum_probs=105.0
Q ss_pred HHhhhhhhhhhhhh-hcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHH-h--hhh
Q 010350 127 NMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL-L--AGF 202 (512)
Q Consensus 127 ~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-~--~~~ 202 (512)
......+..++|.+ .+++|.+..+.++..++..+...+++++.|+++||+|||+++.++.++.++....... . .++
T Consensus 256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSS 335 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 34444556677774 5668999999999998888888899999999999999999887765544333321111 1 112
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhh-HHHHHhhhhHHhccccC-chHHHHHHHHHHH
Q 010350 203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIENLG-WESVFYIFGLLGI 280 (512)
Q Consensus 203 ~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~g-w~~~f~~~~~~~~ 280 (512)
....+..-.+.+++.+...+....+++|++|++.|+.++|+.+....+ .+...|.+.+.+ +..| |...+++.++..+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~ 414 (432)
T PRK10406 336 PYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAV 414 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHH
Confidence 222222222222333333455677889999999999999998876554 344577877755 4445 5556666555555
Q ss_pred HHHHHHHhhc
Q 010350 281 AWFSGFKILQ 290 (512)
Q Consensus 281 ~~~~~~~~~~ 290 (512)
+..+..++++
T Consensus 415 i~~~~~~~l~ 424 (432)
T PRK10406 415 VAFLVSLMLH 424 (432)
T ss_pred HHHHHHHHhh
Confidence 5555544443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-10 Score=114.59 Aligned_cols=151 Identities=17% Similarity=0.117 Sum_probs=110.1
Q ss_pred hhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 010350 137 IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIG 216 (512)
Q Consensus 137 ~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~ 216 (512)
.|.+.+.+|.+..+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++.....++.+..+++.++.+++
T Consensus 223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g 302 (382)
T PRK10091 223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAG 302 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34566678999999999999999999999999999999999999999888877777655543444445556666666666
Q ss_pred cccchhhHHHHH-HhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccc-cCchHHHHHHHHHHHHHHHHHHhh
Q 010350 217 EGVSPSAATDLI-ARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LGWESVFYIFGLLGIAWFSGFKIL 289 (512)
Q Consensus 217 ~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~gw~~~f~~~~~~~~~~~~~~~~~ 289 (512)
.....+...... .+..+++.++.. ..+....+|.++||.++|++.+. .+|++.+++.+++.++.+......
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 303 LFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred HHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 544444434333 343344445443 34667889999999999999985 689999999887776654444433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=118.71 Aligned_cols=156 Identities=21% Similarity=0.135 Sum_probs=134.8
Q ss_pred hhhhhhhhh-hcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 010350 132 NLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSR 210 (512)
Q Consensus 132 ~~~~~~~~~-~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 210 (512)
.+...+|.+ .+++|.+....|++.+.+.+|.+++.++.+++.+|+++++++..+.++++++.+..+ +.++.+..+++.
T Consensus 236 a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~la-l~~~~~~~~~~l 314 (524)
T PF05977_consen 236 AVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLA-LSPSFWLALIAL 314 (524)
T ss_pred HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHh-cchHHHHHHHHH
Confidence 334456764 467899999999999999999999999999999999999999999888888887775 556668888889
Q ss_pred HHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHh
Q 010350 211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI 288 (512)
Q Consensus 211 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 288 (512)
++.|++.........+.+....|++.||++++++.+....+..+|.++.|.+.+++|.+..+.+.++..++..++...
T Consensus 315 ~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~ 392 (524)
T PF05977_consen 315 FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR 392 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988889999999999999999999999999999999999999999999999998877665554444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-10 Score=113.98 Aligned_cols=172 Identities=19% Similarity=0.245 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcccC-CCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHH
Q 010350 118 TTSLAFVICNMDKVNLSVAIIPMSHRFG-WNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL 196 (512)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 196 (512)
...+..++.+.....+..+.+.+.++.| .+....+.+.++..++-++.-...+++..|+|.|+++.++.+.+++=..+.
T Consensus 211 ~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~ 290 (400)
T PF03825_consen 211 VFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLY 290 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 3444445666777777778888788888 788888888888888999999999999999999999999999998888777
Q ss_pred HHhhhhHHHHHHH----HHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhh-hhhHHHHHhhhhHHhccccCchH-
Q 010350 197 PLLAGFMPGLVLS----RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGG-LSFGSVAGLLLAPPIIENLGWES- 270 (512)
Q Consensus 197 ~~~~~~~~~~~~~----r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~l~~~~gw~~- 270 (512)
+..+++.+...+. ..+.|+..+..+.....++.+..|++.|++++++++.. .++|..+|..++|++.+++|-+.
T Consensus 291 a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~ 370 (400)
T PF03825_consen 291 AYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGM 370 (400)
T ss_pred HHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhh
Confidence 6654443443333 45699999999999999999999999999999998875 57999999999999999887554
Q ss_pred -----HHHHHHHHHHHHHHHHHhh
Q 010350 271 -----VFYIFGLLGIAWFSGFKIL 289 (512)
Q Consensus 271 -----~f~~~~~~~~~~~~~~~~~ 289 (512)
.+.+.+++.++..+.+.++
T Consensus 371 ~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 371 FDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444333333
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.7e-11 Score=117.83 Aligned_cols=151 Identities=14% Similarity=0.166 Sum_probs=105.3
Q ss_pred hhhhhcccCCCchhhHHHHHHH-HHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHH-
Q 010350 137 IIPMSHRFGWNSSVAGLVQSSF-FWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL---PLLAGFMPGLVLSRV- 211 (512)
Q Consensus 137 ~~~~~~~~g~s~~~~~~~~s~~-~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~r~- 211 (512)
.+.+.+++|++..+++++.+.. .++..++.+++|++.||+|+|+.+.++.++..+..+.. +...++.+.+++.-+
T Consensus 233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 312 (402)
T PRK11902 233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI 312 (402)
T ss_pred HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3446677899999999998665 45688999999999999999998877766655543322 122234444554443
Q ss_pred ---HHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHh
Q 010350 212 ---LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI 288 (512)
Q Consensus 212 ---l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 288 (512)
..|++.+...+....++.+.+|.+ ..+++....++|..+++.++|.+.+.+||++.|.+.++++++.+++...
T Consensus 313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 313 ENLCGGMGTAAFVALLMALCNRSFSAT----QYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555566666655544 4566666667888877789999999999999999988888776555544
Q ss_pred hcc
Q 010350 289 LQE 291 (512)
Q Consensus 289 ~~~ 291 (512)
.+.
T Consensus 389 ~~~ 391 (402)
T PRK11902 389 MRG 391 (402)
T ss_pred Hhh
Confidence 433
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=117.76 Aligned_cols=176 Identities=21% Similarity=0.213 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcC--CchHHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG--GRKVLQTGVLIWSL 191 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~~ 191 (512)
+.++.+.+...+..++..+....+|.+.++.|.+..+...+.++..+...++.++.|+++|+.. ++.+..+++++.++
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl 377 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL 377 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence 5566677777777888888888999999999999999999999999999999999999999988 45566677777777
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccC-chH
Q 010350 192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WES 270 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~~ 270 (512)
+.+.++ ..++++.+++.-.+.|++.|........++.|..+.++.+.+.|+......++..+||+++|.+.+..| |..
T Consensus 378 ~~~~~p-~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~ 456 (509)
T KOG2504|consen 378 ARLFLP-FATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDH 456 (509)
T ss_pred HHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeee
Confidence 765554 556668999999999999999988888899999999999999999999999999999999999999877 999
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 010350 271 VFYIFGLLGIAWFSGFKILQ 290 (512)
Q Consensus 271 ~f~~~~~~~~~~~~~~~~~~ 290 (512)
.|+..++..++....+++.+
T Consensus 457 ~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 457 AFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred ehhhcChHHHHHHHHHHHhH
Confidence 99999998888777666666
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.1e-11 Score=120.11 Aligned_cols=178 Identities=16% Similarity=0.049 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhh-hcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHH--------HH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVL--------QT 184 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~--------~~ 184 (512)
+.+..+.+..+........+..++|.+ .+.+|.+..+.+++.++..++..++.++.|+++||+++|+.. ..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 340 (465)
T TIGR00894 261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFN 340 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 444555566666666667777788874 566899999999999999999999999999999998754321 11
Q ss_pred HHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHh
Q 010350 185 GVLIW--SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI 262 (512)
Q Consensus 185 ~~~~~--~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 262 (512)
+.... ++...+......+....+++..+.+.+.+...+.......|..| +.+|..+++.+....+|+.++|.+.|.+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~ 419 (465)
T TIGR00894 341 GIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNI 419 (465)
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 11111 11111111112233334445555566555555555555566666 5899999999999999999999999998
Q ss_pred cccc---CchHHHHHHHHHHHHHHHHHHhhccC
Q 010350 263 IENL---GWESVFYIFGLLGIAWFSGFKILQEG 292 (512)
Q Consensus 263 ~~~~---gw~~~f~~~~~~~~~~~~~~~~~~~~ 292 (512)
.+.. +|+..|++.++..++..+...+..+.
T Consensus 420 ~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 452 (465)
T TIGR00894 420 LSQDSKNVWLIVFLIMAFVNILCVIFYLIFGSA 452 (465)
T ss_pred eCCCCchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 8753 38888988887777766555554443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=116.39 Aligned_cols=140 Identities=12% Similarity=0.065 Sum_probs=115.8
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhH
Q 010350 145 GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAA 224 (512)
Q Consensus 145 g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 224 (512)
+.+....|++.++..+...++.+..|++.||+|+|+.+.++.++.++...+.. ..++.+.+++.+++.|++........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~ 328 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSS-FATTALEVVILKMLHAFEVPFLLVGC 328 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 55667789999999999999999999999999999999999888887766554 45566777888999999876666666
Q ss_pred HHHHHhhcCccchhhHHHH-HHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHH
Q 010350 225 TDLIARSIPLEERSRAVSF-VFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSG 285 (512)
Q Consensus 225 ~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 285 (512)
..+..+..+++.++...+. ++....+|.+++|.++|++.+..||+..|++.+++.++..+.
T Consensus 329 ~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 329 FKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 6677777787777777666 678899999999999999999999999999988887665444
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-11 Score=124.84 Aligned_cols=151 Identities=17% Similarity=-0.029 Sum_probs=114.4
Q ss_pred hhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhhc
Q 010350 139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIGE 217 (512)
Q Consensus 139 ~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~l~G~~~ 217 (512)
...++++.+.. +...+..+....+.++.+++.||+|||+.+.++.++.+++.++.....+. .+..++..++.+++.
T Consensus 348 ~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 424 (505)
T TIGR00898 348 LDLGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGI 424 (505)
T ss_pred ccccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 33444555533 33334456667788899999999999999999988877777666443332 134455566777777
Q ss_pred ccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHhhccCCC
Q 010350 218 GVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGET 294 (512)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~ 294 (512)
+..++....+.+|.+|++.|+.++|+.+....+|.+++|.+.+ + ...++...+++.++..++..+..+++||++.
T Consensus 425 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~lpet~~ 499 (505)
T TIGR00898 425 TSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFLPETKG 499 (505)
T ss_pred HHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 7778888999999999999999999999999999999999998 3 4457778888888888777777777776543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.1e-11 Score=122.25 Aligned_cols=158 Identities=17% Similarity=0.134 Sum_probs=107.8
Q ss_pred hhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCch-------HHHHHHHHHHHHHHHHHHhhhhHH
Q 010350 133 LSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK-------VLQTGVLIWSLATALLPLLAGFMP 204 (512)
Q Consensus 133 ~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~~~~~~~~~~~~~~~~~~~~ 204 (512)
+...+|. +.+++|++..+.+++.+++.++..++.+++|+++||++||+ ...+..++.+++..+.. ..++.+
T Consensus 271 ~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~-~~~~~~ 349 (476)
T PLN00028 271 MDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLG-RANSLG 349 (476)
T ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhc-ccchHH
Confidence 4445555 45678999999999999999999999999999999998752 22233333223222322 233334
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHH
Q 010350 205 GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFS 284 (512)
Q Consensus 205 ~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~ 284 (512)
..++..++.+++.+...+...+++.+..| ++++...|+.+.+..+|+.++|.+.+ ..+..+|+..|++.+++.++..+
T Consensus 350 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~ 427 (476)
T PLN00028 350 AAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTL 427 (476)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHH
Confidence 44555556666655555555556666544 78999999998888888888887754 22345799999999888877776
Q ss_pred HHHhhccCC
Q 010350 285 GFKILQEGE 293 (512)
Q Consensus 285 ~~~~~~~~~ 293 (512)
+.++.+.+.
T Consensus 428 ~~~~~~~~~ 436 (476)
T PLN00028 428 PVAFIHFPQ 436 (476)
T ss_pred HHHheeccc
Confidence 666665433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-10 Score=114.25 Aligned_cols=154 Identities=15% Similarity=0.048 Sum_probs=115.1
Q ss_pred hhhhhhhhhhhcccCCCchhhHHHHHHHHH-HHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhh-----hhHH
Q 010350 131 VNLSVAIIPMSHRFGWNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA-----GFMP 204 (512)
Q Consensus 131 ~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~~ 204 (512)
.......+.+.+|.|++.+++|++...... ...++.++.|++.||+|+|+.+.++.++.++......... .+..
T Consensus 225 ~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (390)
T TIGR02718 225 VSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIA 304 (390)
T ss_pred HHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHH
Confidence 333345556666789999999999887764 6667789999999999999999887665533332221111 1222
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHHhhcCc-cchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHH
Q 010350 205 GLVLSRVLVGIGEGVSPSAATDLIARSIPL-EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF 283 (512)
Q Consensus 205 ~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~ 283 (512)
.++....+.+++.+...+...+.+.+..++ +.+++.+++.++..++|..++|.++|++.+..|++..|++.+++.++..
T Consensus 305 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 305 VAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 334445566667777777778887787766 7899999999999999999999999999999999999998877665544
Q ss_pred H
Q 010350 284 S 284 (512)
Q Consensus 284 ~ 284 (512)
+
T Consensus 385 ~ 385 (390)
T TIGR02718 385 L 385 (390)
T ss_pred H
Confidence 3
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.7e-10 Score=111.69 Aligned_cols=145 Identities=16% Similarity=0.140 Sum_probs=114.6
Q ss_pred hhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 010350 137 IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIG 216 (512)
Q Consensus 137 ~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~ 216 (512)
.|.+.+++|++..+.+++.+.+.++..++.++.+++.||.+ |+.++.+.++..+...+.....++.+.+.+..++.|++
T Consensus 240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~ 318 (394)
T PRK10213 240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLT 318 (394)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 46677888999999999999999999999999999999964 44444444443333333323445556777888999999
Q ss_pred cccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHH
Q 010350 217 EGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF 283 (512)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~ 283 (512)
.+...+...+++.+..| +++++..++......+|..+||.++|++.+..|++..++..+++.++..
T Consensus 319 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 319 FALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence 99888888888888887 6677888888888899999999999999999999988888776654443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.7e-11 Score=117.36 Aligned_cols=163 Identities=13% Similarity=0.098 Sum_probs=120.2
Q ss_pred cHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHH
Q 010350 335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQ 414 (512)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 414 (512)
+|.++.+.+..++...+.+....++|.|+++.+|++..+.|++.+...++.++++++.|+++||+++| ..+
T Consensus 6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k---------~~~ 76 (395)
T PRK10054 6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKK---------RYM 76 (395)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc---------hhH
Confidence 34567777888888889899999999999888999999999999999999999999999999999865 222
Q ss_pred HHHhHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhc
Q 010350 415 TIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYL 494 (512)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l 494 (512)
.++.+...+........ ++....++...+.+.+.+...+.......+..++++|+++.|+.+...++|.+++|.++|.+
T Consensus 77 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l 155 (395)
T PRK10054 77 LLAITAFASGFIAIPLV-NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLL 155 (395)
T ss_pred HHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333222 22222333333444444444555555666778899999999999999999999999999998
Q ss_pred ccccCcceEEEEecC
Q 010350 495 LDSTHSWSVSYQCPP 509 (512)
Q Consensus 495 ~~~~g~~~~~f~~~~ 509 (512)
.+ .| |+..|++.+
T Consensus 156 ~~-~g-~~~~f~~~~ 168 (395)
T PRK10054 156 VM-QS-INLPFWLAA 168 (395)
T ss_pred HH-hc-cCcHHHHHH
Confidence 86 45 887776544
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.1e-11 Score=119.07 Aligned_cols=164 Identities=12% Similarity=0.115 Sum_probs=120.4
Q ss_pred cHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHH-HHcCCCccchhHHH
Q 010350 335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL-IATGVETTMVRKIC 413 (512)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~~~~~~~ 413 (512)
.+.++.+....+...+.+|++..++|.|+++.+|++..+++.+.........++.+++|+++||+ |+| + .
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr--------r-~ 78 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR--------M-A 78 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH--------H-H
Confidence 46677777788888899999999999999988999999999999999999999999999999999 754 2 2
Q ss_pred HHHHhHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcc--hhHHHHHHHHhhhchhhhhHHhhh
Q 010350 414 QTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPE--YASILLGITNTVGAVPGIVGVALT 491 (512)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~lg~~i~p~i~ 491 (512)
..++.++..+...+............+...+..++.+...+.......+.+|++ +|.++.++.++..++|+.++|.+.
T Consensus 79 iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~ 158 (493)
T PRK15462 79 VMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIAC 158 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHH
Confidence 334433333333322221111222333333344444544454555667777765 699999999999999999999999
Q ss_pred hhcccccCcceEEEEec
Q 010350 492 GYLLDSTHSWSVSYQCP 508 (512)
Q Consensus 492 G~l~~~~g~~~~~f~~~ 508 (512)
|++.+..| |+..|.+.
T Consensus 159 g~L~~~~G-w~~~F~ia 174 (493)
T PRK15462 159 GYAQEEYS-WAMGFGLA 174 (493)
T ss_pred HHHHhhhC-hHHHHHHH
Confidence 99999887 88877654
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-10 Score=114.11 Aligned_cols=162 Identities=14% Similarity=0.086 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhccc--CCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHH-HHHHHHHHHHH
Q 010350 117 GTTSLAFVICNMDKVNLSVAIIPMSHRF--GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVL-QTGVLIWSLAT 193 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~~~~ 193 (512)
+...+.+++.......+..++|.+.+++ |.+..+.++..+...++..++.+++|+++||++||+.. ....++..++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~ 324 (412)
T TIGR02332 245 MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW 324 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH
Confidence 3444555555556666777888877764 66888899999999999999999999999999987753 33333333333
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccC-chHHH
Q 010350 194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVF 272 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~~~f 272 (512)
.+. ....+....+++-++.+++.....+.......+.+|+++|+.++|+.+....+|.+++|.+.|.+.+..| |++.|
T Consensus 325 ~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~ 403 (412)
T TIGR02332 325 LLA-SATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGL 403 (412)
T ss_pred HHH-HhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhH
Confidence 222 2222212222222333333333334444555677899999999999999999999999999999999875 99999
Q ss_pred HHHHHHH
Q 010350 273 YIFGLLG 279 (512)
Q Consensus 273 ~~~~~~~ 279 (512)
++.+++.
T Consensus 404 ~~~~~~~ 410 (412)
T TIGR02332 404 WFVAALL 410 (412)
T ss_pred HHHHHHH
Confidence 8866543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-09 Score=109.52 Aligned_cols=152 Identities=14% Similarity=-0.001 Sum_probs=116.4
Q ss_pred hhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhh----hhHHHH
Q 010350 132 NLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA----GFMPGL 206 (512)
Q Consensus 132 ~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 206 (512)
......|. +.+++|.+..+.++......++..++.++.|+++||+++|+.+.++.++..++..+..... .+.+.+
T Consensus 233 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 312 (406)
T PRK15402 233 AWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWL 312 (406)
T ss_pred HHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHH
Confidence 33344555 4567899999999988888888899999999999999999999888777666665553321 334556
Q ss_pred HHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHH
Q 010350 207 VLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFS 284 (512)
Q Consensus 207 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~ 284 (512)
++..++.|++.+...+......... ++++|++..+.++....+|..+|+.+++.+.+..++....+..++..++.+.
T Consensus 313 ~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 389 (406)
T PRK15402 313 TAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLL 389 (406)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHH
Confidence 7788889998887776666555433 4489999999999999999999999999999988877766665555544433
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.4e-10 Score=98.87 Aligned_cols=127 Identities=17% Similarity=0.134 Sum_probs=105.3
Q ss_pred hhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc
Q 010350 139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEG 218 (512)
Q Consensus 139 ~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~ 218 (512)
.+++.+|+|+...+-+.+..+....+..++.|.++||+|++.+.+.+..+..+..=..-+++ .+.=.+...+.|+..+
T Consensus 290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsys 367 (459)
T KOG4686|consen 290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYS 367 (459)
T ss_pred HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHH
Confidence 37899999999999999998889999999999999999999888776555444332211121 2334567788999988
Q ss_pred cchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccC
Q 010350 219 VSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG 267 (512)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 267 (512)
..-...+..++...|+++.|++.|..+...++|-++.|+++|+++++-|
T Consensus 368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 8877789999999999999999999999999999999999999999765
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=118.64 Aligned_cols=169 Identities=11% Similarity=0.099 Sum_probs=121.5
Q ss_pred HHhhcH-hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhH-HHHcCCCccc
Q 010350 331 AIFRSK-AVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADN-LIATGVETTM 408 (512)
Q Consensus 331 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~ 408 (512)
+.+++| .++......++..++++....++|.|+++.+|++..+++.+............+++|++.|| +|+|
T Consensus 15 ~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r------ 88 (500)
T PRK09584 15 NAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK------ 88 (500)
T ss_pred hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH------
Confidence 445665 58888888899999999999999999998999999988877777665555556789999999 4864
Q ss_pred hhHHHHHHHhHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcc--hhHHHHHHHHhhhchhhhh
Q 010350 409 VRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPE--YASILLGITNTVGAVPGIV 486 (512)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~lg~~i 486 (512)
.....+.++..+...+............++..+.+++.+...+.......+.+|++ +++.+.++.++..++|..+
T Consensus 89 ---~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~ 165 (500)
T PRK09584 89 ---RVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFF 165 (500)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHH
Confidence 33334444444343333332222233344455667776666666666667766654 3556788999999999999
Q ss_pred HHhhhhhcccccCcceEEEEecC
Q 010350 487 GVALTGYLLDSTHSWSVSYQCPP 509 (512)
Q Consensus 487 ~p~i~G~l~~~~g~~~~~f~~~~ 509 (512)
+|.+.|++.|.+| |++.|.+.+
T Consensus 166 gp~i~g~l~~~~g-~~~~F~i~~ 187 (500)
T PRK09584 166 SMLATPWLAAKYG-WSVAFALSV 187 (500)
T ss_pred HHHHHHHHHHhhC-HHHHHHHHH
Confidence 9999999999887 888876544
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.7e-10 Score=109.61 Aligned_cols=141 Identities=14% Similarity=0.023 Sum_probs=108.5
Q ss_pred HHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc-CCchHHHHHHHHHHHHHHHHHHhhhhH
Q 010350 125 ICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWSLATALLPLLAGFM 203 (512)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~ 203 (512)
+..........++|.+.++.|.+..+.+++.++..++..+++++.|++.||+ +||+.+.++.++.+++..+.....++
T Consensus 208 ~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 286 (355)
T TIGR00896 208 LQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMH- 286 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhh-
Confidence 3334444455677877778899999999999999999999999999999999 56666677767666666555433222
Q ss_pred HHHHHHHHHHHhhcccchhhHHHHHHhhcC-ccchhhHHHHHHhhhhhHHHHHhhhhHHhccccC
Q 010350 204 PGLVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG 267 (512)
Q Consensus 204 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 267 (512)
... ...++.|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.|++.++.|
T Consensus 287 ~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 287 GLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222 24567899999988887777776554 5677899999999999999999999999998776
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-10 Score=118.12 Aligned_cols=163 Identities=11% Similarity=0.111 Sum_probs=125.5
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--cCCChhhhHHHhhhhHHHHHHHHHHHHHHHhH-HHHcCCCccchhHH
Q 010350 336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE--LSLNLTEAAWVSILPPLASVLVTSIAAQFADN-LIATGVETTMVRKI 412 (512)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~~~ 412 (512)
+.++.+.+..++..+++++...++|.|+++. +|++..+++.+.+...++..++.+++|+++|| +|+| .
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~---------~ 80 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTK---------K 80 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchH---------H
Confidence 5566777788888999999999999999877 89999999999999999999999999999999 7754 3
Q ss_pred HHHHHhHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcc---hhHHHHHHHHhhhchhhhhHHh
Q 010350 413 CQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPE---YASILLGITNTVGAVPGIVGVA 489 (512)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~lg~~i~p~ 489 (512)
.+.++.++..+...+.... .+.....++..+.+++.+...+.......+.++++ +|+++.++.+...++|.++||.
T Consensus 81 ~l~~~~~~~~~g~~~~~~~-~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~ 159 (475)
T TIGR00924 81 TMVLGGIVLMLGHFMLAMS-IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPL 159 (475)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHH
Confidence 3444444444444444332 22333445556667776666666666666666654 4888999999999999999999
Q ss_pred hhhhcccccCcceEEEEecC
Q 010350 490 LTGYLLDSTHSWSVSYQCPP 509 (512)
Q Consensus 490 i~G~l~~~~g~~~~~f~~~~ 509 (512)
++|++.+..| |+..|.+.+
T Consensus 160 l~g~l~~~~g-~~~~f~~~~ 178 (475)
T TIGR00924 160 LAGVIAENYG-YHVGFNLAA 178 (475)
T ss_pred HHHHHHHhcC-hHHHHHHHH
Confidence 9999999887 887776543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-08 Score=93.04 Aligned_cols=161 Identities=16% Similarity=0.131 Sum_probs=123.8
Q ss_pred HhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhh------h
Q 010350 128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA------G 201 (512)
Q Consensus 128 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------~ 201 (512)
-..+.++.+-|.+++.+|+|.+|.+.+.+...+|..+ .++.|.+.|++|++.++.+|.+...++..+..... .
T Consensus 16 Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~ 94 (250)
T PF06813_consen 16 GTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSL 94 (250)
T ss_pred CcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCcc
Confidence 3566777888999999999999999999999999876 58899999999999999999988888876664332 2
Q ss_pred hHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHH-H
Q 010350 202 FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLG-I 280 (512)
Q Consensus 202 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~-~ 280 (512)
.++.+.+..++.|.+.+...........+.|| ++||++.|+.-...++++.+-..+...+.+. +-...+.+.++.. +
T Consensus 95 ~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~la~~~~~ 172 (250)
T PF06813_consen 95 PVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFLAVLPAV 172 (250)
T ss_pred chHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHH
Confidence 35677777788888877777777777778898 6899999999999999999888887777765 3333344444443 3
Q ss_pred HHHHHHHhhcc
Q 010350 281 AWFSGFKILQE 291 (512)
Q Consensus 281 ~~~~~~~~~~~ 291 (512)
++++...++++
T Consensus 173 v~l~~~~~vr~ 183 (250)
T PF06813_consen 173 VCLVAMFFVRP 183 (250)
T ss_pred HHHHHhhheec
Confidence 44444444443
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-08 Score=94.13 Aligned_cols=361 Identities=14% Similarity=0.097 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhh-----hcCCchHHHH-HHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK-----IFGGRKVLQT-GVL 187 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-----r~g~r~~~~~-~~~ 187 (512)
+.+..+.+.+..+++-..... .+|.+.+.-|.|.++.+...-++. .+ ..-++|.++.| |+||||.-++ +..
T Consensus 31 ~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~-P~-sLKllWaPiVDs~y~k~~GrrksWvvp~q~ 107 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW-PF-SLKLLWAPIVDSVYSKRFGRRKSWVVPCQY 107 (510)
T ss_pred hhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh-HH-HHHHHHHhhhHHHHHHhhccccceeeehHH
Confidence 445556666777877777777 899998888999888776544443 32 45789999999 9999886554 333
Q ss_pred HHHHHHHHHHHhh----------hhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhh
Q 010350 188 IWSLATALLPLLA----------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLL 257 (512)
Q Consensus 188 ~~~~~~~~~~~~~----------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 257 (512)
+.+..+.+.+... ++...+....++.-+..+....+...+.-.+..+++.|.+......+...|.+++..
T Consensus 108 llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ 187 (510)
T KOG3574|consen 108 LLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNV 187 (510)
T ss_pred HHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcc
Confidence 3333333333221 112233345567777778888888888888999999999988888888888888776
Q ss_pred hhHHhcc-------ccCch---------HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhc
Q 010350 258 LAPPIIE-------NLGWE---------SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321 (512)
Q Consensus 258 ~~~~l~~-------~~gw~---------~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (512)
+.-.+.. ..+|. ..+++.+.+.++.-.+..+..++++.. ..+|......+.
T Consensus 188 ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~----~~~e~~~~i~~~--------- 254 (510)
T KOG3574|consen 188 VFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDES----VDEELELGIHES--------- 254 (510)
T ss_pred eeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchh----hhhhhhcCHHHH---------
Confidence 6443332 11222 233444444444433333443332222 001100000000
Q ss_pred CCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHH
Q 010350 322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA 401 (512)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~ 401 (512)
..-+.++++-|.+..++.+....-.++.+-....+.-+.| .|.+..+.++...+..-.++ +.++...|+..
T Consensus 255 ----yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~v~~~plqI----~l~~~~gk~ta 325 (510)
T KOG3574|consen 255 ----YKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELALIAVPLVPLQI----ALPLYIGKWTA 325 (510)
T ss_pred ----HHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHheeeeeehhhHHH----hhhhhheeecC
Confidence 1123566677777777777777778888888888888876 59999988765544433444 44444444433
Q ss_pred cCC-CccchhHHHHHHHhHHHHHHHHHhhccCCC-----Ch----HHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHH
Q 010350 402 TGV-ETTMVRKICQTIAFLSPAVCMTLSSIDLGL-----PH----WEIVGILTAGLALSSFALSGLYCTHQDISPEYASI 471 (512)
Q Consensus 402 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 471 (512)
... .....|....-+........+....-.... +. ..+....+.+...-..+...+...++..+|..-|+
T Consensus 326 ~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggT 405 (510)
T KOG3574|consen 326 GPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGT 405 (510)
T ss_pred CCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCcc
Confidence 211 111112111112222212222211111111 11 11111223333333444555666677788999999
Q ss_pred HHHHHHhhhchhhhhHHhhhhhcccccC
Q 010350 472 LLGITNTVGAVPGIVGVALTGYLLDSTH 499 (512)
Q Consensus 472 ~~g~~~~~~~lg~~i~p~i~G~l~~~~g 499 (512)
-+.+.|+..++|+-.-..+++.+.|..+
T Consensus 406 ymTlLNTLsnLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 406 YMTLLNTLSNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence 9999999999999998899999999876
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.7e-10 Score=116.10 Aligned_cols=164 Identities=13% Similarity=0.154 Sum_probs=126.1
Q ss_pred cHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhH-HHHcCCCccchhHHH
Q 010350 335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADN-LIATGVETTMVRKIC 413 (512)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~~~~ 413 (512)
.+.+|.++...++..+++|+...+++.|+++.+|++..+++.+.........+..+++|+++|| +|+| ..
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r---------~~ 83 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTK---------RT 83 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchH---------HH
Confidence 4667778888888999999999999999999999999999888888887888888899999999 8864 33
Q ss_pred HHHHhHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcc--hhHHHHHHHHhhhchhhhhHHhhh
Q 010350 414 QTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPE--YASILLGITNTVGAVPGIVGVALT 491 (512)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~lg~~i~p~i~ 491 (512)
...+.++..+...............+++..+.+++.+...+.....+.+.+|++ +|+.+.++.+...++|..++|.++
T Consensus 84 ~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~ 163 (489)
T PRK10207 84 IVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLA 163 (489)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHH
Confidence 334444444443333333222223335566667777777777777788878776 457889999999999999999999
Q ss_pred hhcccccCcceEEEEec
Q 010350 492 GYLLDSTHSWSVSYQCP 508 (512)
Q Consensus 492 G~l~~~~g~~~~~f~~~ 508 (512)
|++.+..| |++.|++.
T Consensus 164 g~l~~~~g-w~~~F~i~ 179 (489)
T PRK10207 164 PVIADKFG-YSVTYNLC 179 (489)
T ss_pred HHHHHhhC-hHHHHHHH
Confidence 99999987 88888764
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-09 Score=106.06 Aligned_cols=158 Identities=15% Similarity=0.107 Sum_probs=130.8
Q ss_pred hhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 010350 133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVL 212 (512)
Q Consensus 133 ~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l 212 (512)
+..+...+-++-+.+....|.+.++..+.-.+...+..++.+|+|.|+.++++.+++++=..+.+ .+++.+.+.+.+.+
T Consensus 243 f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~-~~~~~~~i~~~klL 321 (412)
T PF01306_consen 243 FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSG-FATNPWVISLIKLL 321 (412)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-T--SHHHHHHHHHH
T ss_pred HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHh-hhcchHHHHHHHHH
Confidence 44445555555566777899999999999999999999999999999999999999888776664 56677899999999
Q ss_pred HHhhcccchhhHHHHHHhhcCccchhhHHHHH-HhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHhhcc
Q 010350 213 VGIGEGVSPSAATDLIARSIPLEERSRAVSFV-FGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE 291 (512)
Q Consensus 213 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 291 (512)
.|+-.+........++++.+|++-.++...+. +....+|.++.+.++|.+.|+.|.+..|++.+++.+...++..+..+
T Consensus 322 H~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 322 HALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence 99999999999999999999988888888884 67889999999999999999999999999999887766555544433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=104.28 Aligned_cols=177 Identities=18% Similarity=0.110 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhh-hcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHH
Q 010350 115 LIGTTSLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT 193 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 193 (512)
.+....++.++..=+.+.+...-..+ ..++|++..+..++.....+..+++++++|+|.||+|.|+++.++++++.+.+
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~ 332 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA 332 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH
Confidence 33344444444333333333333334 45899999999999999999999999999999999999999999999888877
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccC-chHHH
Q 010350 194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVF 272 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~~~f 272 (512)
+..- +......+.++-.+.|++.|+.++..=++.++..|+++-+..+|+++...-.++.+||.+.+.+.+..| -|..+
T Consensus 333 ~~~~-~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~ 411 (438)
T COG2270 333 LYLI-FLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGV 411 (438)
T ss_pred HHHH-HccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHH
Confidence 6553 444446677888999999999999999999999999999999999999999999999999999888654 67777
Q ss_pred HHHHHHHHHHHHHHHhhccC
Q 010350 273 YIFGLLGIAWFSGFKILQEG 292 (512)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~ 292 (512)
....++.++.++....+|.+
T Consensus 412 ~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 412 LSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHhhHhhEEeecCC
Confidence 66666656666666566554
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-09 Score=107.98 Aligned_cols=142 Identities=20% Similarity=0.289 Sum_probs=104.2
Q ss_pred hhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhh----hhHHH
Q 010350 131 VNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA----GFMPG 205 (512)
Q Consensus 131 ~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~ 205 (512)
.......|. +.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+.++..++..+..... +....
T Consensus 223 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (385)
T TIGR00710 223 FAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAM 302 (385)
T ss_pred HHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 334444555 4567899999999999999999999999999999999999999888777666655543321 23344
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhh-HHHHHhhhhHHhccccCchHHHHH
Q 010350 206 LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIENLGWESVFYI 274 (512)
Q Consensus 206 ~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~gw~~~f~~ 274 (512)
+++..++.|++.+...+.......|..| ++++++.++++..... |.+.+|. .+.+.+..+|...++.
T Consensus 303 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~-~~~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 303 IIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYL-VSLIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHH-HHhccccChHHHHHHH
Confidence 5566778889888888888888888876 7899999998877765 4555554 4455554455544443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.9e-08 Score=99.88 Aligned_cols=151 Identities=19% Similarity=0.216 Sum_probs=121.3
Q ss_pred hhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCchHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHH
Q 010350 138 IPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSLATALLPLLAG-------FMPGLVLS 209 (512)
Q Consensus 138 ~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 209 (512)
..+.+.+|.+..++..+...+....-+.++++|+++|+ +|+++.+.++.++..++..+.+..+. .....+++
T Consensus 12 lYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~g 91 (654)
T TIGR00926 12 LYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLG 91 (654)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHH
Confidence 33455689999988888888888888999999999996 79999999999998888877654221 11346677
Q ss_pred HHHHHhhcccchhhHHHHHHhhcCcc---chhhHHHHHHhhhhhHHHHHhhhhHHhccc-------cCchHHHHHHHHHH
Q 010350 210 RVLVGIGEGVSPSAATDLIARSIPLE---ERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-------LGWESVFYIFGLLG 279 (512)
Q Consensus 210 r~l~G~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-------~gw~~~f~~~~~~~ 279 (512)
..+..+|.|++-+...+...|.++++ +|-....++..+.++|+.+++++.+++.+. .+|...|.+.++..
T Consensus 92 LaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m 171 (654)
T TIGR00926 92 LALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILM 171 (654)
T ss_pred HHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHH
Confidence 88889999999999999999999754 366788888999999999999999988744 36999999988887
Q ss_pred HHHHHHHHh
Q 010350 280 IAWFSGFKI 288 (512)
Q Consensus 280 ~~~~~~~~~ 288 (512)
++.++++..
T Consensus 172 ~ia~lvf~~ 180 (654)
T TIGR00926 172 ILALIVFMA 180 (654)
T ss_pred HHHHHHHHH
Confidence 766655443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.2e-09 Score=105.64 Aligned_cols=172 Identities=15% Similarity=0.071 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHH
Q 010350 117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL 196 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 196 (512)
+.+++.++..+.....++.++|.+.++ ..+.........+..+...+..+++|+++||+|+|+++.++.++..++....
T Consensus 255 Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~ 333 (462)
T PRK15034 255 WLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALL 333 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 344445555555555566666665443 2233333333445567788899999999999999999998887766665332
Q ss_pred HHhh-----hhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCc---------------------cchhhHHHHHHhhhhh
Q 010350 197 PLLA-----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL---------------------EERSRAVSFVFGGLSF 250 (512)
Q Consensus 197 ~~~~-----~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~---------------------~~r~~~~~~~~~~~~~ 250 (512)
.... .+++.+.+..+...++.|........++.+.+|+ ++-|.+.|+..+...+
T Consensus 334 ~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~ 413 (462)
T PRK15034 334 FLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAV 413 (462)
T ss_pred HHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHc
Confidence 2222 2345555555555556666666777778787774 2577899999999999
Q ss_pred HHHHHhhhhHHhccccC-chHHHHHHHHHHHHHHHHHHhh
Q 010350 251 GSVAGLLLAPPIIENLG-WESVFYIFGLLGIAWFSGFKIL 289 (512)
Q Consensus 251 g~~~~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~ 289 (512)
|+.+-|.+.|...+..| +...|+...+..++|+++.+..
T Consensus 414 Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 414 GGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred ccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888777654 8888888888888776665544
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-09 Score=108.18 Aligned_cols=151 Identities=17% Similarity=0.137 Sum_probs=112.9
Q ss_pred hhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhh-hcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 010350 134 SVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK-IFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVL 212 (512)
Q Consensus 134 ~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l 212 (512)
....|.+.++.+.++.+.+++.++..++...+..+.+++.| |++.++.+..+.++.+++..+.+ ..++.+.+++..++
T Consensus 228 ~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~l 306 (400)
T PRK11646 228 MLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIG-MVSNLQQLFTLICL 306 (400)
T ss_pred HHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHH
Confidence 34567766666557888899888887776666666677665 46667777777777777765554 44555666677788
Q ss_pred HHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcccc---Cc-hHHHHHHHHHHHHHHHH
Q 010350 213 VGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL---GW-ESVFYIFGLLGIAWFSG 285 (512)
Q Consensus 213 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---gw-~~~f~~~~~~~~~~~~~ 285 (512)
.|++.+...|...+++.+..|+++|++++|+++....+|..+||.++|++.++. ++ ...+++.++++++..+.
T Consensus 307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 888888888888899999999999999999999999999999999999999874 33 44555545555444433
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.7e-08 Score=96.07 Aligned_cols=311 Identities=16% Similarity=0.105 Sum_probs=190.2
Q ss_pred hHHH-HHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHH
Q 010350 151 AGLV-QSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA 229 (512)
Q Consensus 151 ~~~~-~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~ 229 (512)
.|+. .++.+..+.+++++.+.+.|+.|.|+.+.++...+....+.. +-.|-+-+++.-.+.|+|.+..+.....+++
T Consensus 51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gf--l~~N~y~~yfssallG~Gaallw~GqG~ylt 128 (461)
T KOG3098|consen 51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGF--LFPNSYYLYFSSALLGFGAALLWTGQGGYLT 128 (461)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHH--HhcchHHHHHHHHHhhhhHHheecccceehh
Confidence 3443 778888999999999999999999999999999887766554 3344478999999999999999999999999
Q ss_pred hhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcccc--------Cch-HH-------HHHHHHHHHHH------HHHHH
Q 010350 230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL--------GWE-SV-------FYIFGLLGIAW------FSGFK 287 (512)
Q Consensus 230 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--------gw~-~~-------f~~~~~~~~~~------~~~~~ 287 (512)
+..+++.+.+..++..+....+.++|..+...+..+. +-+ +. +.+..+..+++ ++...
T Consensus 129 ~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~ 208 (461)
T KOG3098|consen 129 SNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFD 208 (461)
T ss_pred hcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhhee
Confidence 9999999999999999999999988877765544321 111 11 11111111111 11111
Q ss_pred hhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-
Q 010350 288 ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE- 366 (512)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~- 366 (512)
+.|.+......+.. + ....... ...-+++++++...+....+..++...-.....|..+.-.
T Consensus 209 ~~p~~~~~~~~~~~-~-------~~~~~~l---------~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~ 271 (461)
T KOG3098|consen 209 FLPSKDVVNCKSSS-E-------TSFSELL---------KLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTR 271 (461)
T ss_pred ecCccchhhhhhhc-c-------ccHHHHH---------HHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhh
Confidence 11111110000000 0 0000000 0124667788888777777776666666667777766432
Q ss_pred -cCC-ChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCC----------
Q 010350 367 -LSL-NLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGL---------- 434 (512)
Q Consensus 367 -~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 434 (512)
.+. +..-.++.....+++.++++...+.+.+|..+.+. +..+.++..+..+..++.....+.
T Consensus 272 ~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~------~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~ 345 (461)
T KOG3098|consen 272 KLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGR------KPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSP 345 (461)
T ss_pred hccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc------CcchhHHHHHHHHHHHHHhccccccCCCCCCccc
Confidence 222 23334556666778888888888888888876543 333344444333333332222111
Q ss_pred -------ChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhH
Q 010350 435 -------PHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVG 487 (512)
Q Consensus 435 -------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~ 487 (512)
-....+..++.|++-+.............. +++|..+.++.-.-..++..++
T Consensus 346 ~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~ 404 (461)
T KOG3098|consen 346 PLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVA 404 (461)
T ss_pred ccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHH
Confidence 113344456667766666666666665544 7777777777666666555443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.8e-09 Score=103.84 Aligned_cols=169 Identities=15% Similarity=-0.021 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCC---chHHHH-HHHHHHH
Q 010350 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG---RKVLQT-GVLIWSL 191 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~---r~~~~~-~~~~~~~ 191 (512)
++.+.+.+++.......+..++|.+.++.|++.. .+...++..+...++ .++++||..| |+.... ..++.++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~ 269 (368)
T TIGR00903 194 LWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAA 269 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHH
Confidence 3445455556666666777889998788888764 566666666555554 4677777654 333332 3333333
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHH
Q 010350 192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV 271 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~ 271 (512)
...+.. ...+....+++-.+.|++.....+..+++.+|.+|++.|++++|+.+....+|++++|++.+.+.. |.+..
T Consensus 270 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~ 346 (368)
T TIGR00903 270 FFLALA-FELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAY 346 (368)
T ss_pred HHHHHH-HccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHH
Confidence 333332 222333445566777888888888888999999999999999999999999999999999987774 77788
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 010350 272 FYIFGLLGIAWFSGFKILQE 291 (512)
Q Consensus 272 f~~~~~~~~~~~~~~~~~~~ 291 (512)
|.+.++..++..+....+++
T Consensus 347 f~~~~~~~~i~~~~~~~~~~ 366 (368)
T TIGR00903 347 FTFLAILITIAFAIALLLPN 366 (368)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 88888777766655544343
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.9e-10 Score=108.68 Aligned_cols=157 Identities=20% Similarity=0.238 Sum_probs=122.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHH
Q 010350 342 IYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSP 421 (512)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 421 (512)
.+..++...........+|.++.+.+|.+..+.+++.+...++..++.++.|++.||+|+| + ....+.++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r--------~-~l~~~~~~~ 72 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRR--------R-VLIIGLLLF 72 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HH--------H-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe--------e-eEeehhhhh
Confidence 3455666677777788888677777899999999999999999999999999999999864 3 444444444
Q ss_pred HHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcc
Q 010350 422 AVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSW 501 (512)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~ 501 (512)
+++..+..+. .+....++..++.|++.+...+.......+..++++|++++|+.+....+|..++|.++|.+.+..| |
T Consensus 73 ~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~ 150 (352)
T PF07690_consen 73 ALGSLLLAFA-SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-W 150 (352)
T ss_dssp HHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-H
T ss_pred hhHHHHhhhh-hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-c
Confidence 4442322222 3334556677888888888888888888888999999999999999999999999999999998876 8
Q ss_pred eEEEEecC
Q 010350 502 SVSYQCPP 509 (512)
Q Consensus 502 ~~~f~~~~ 509 (512)
+..|++.+
T Consensus 151 ~~~~~~~~ 158 (352)
T PF07690_consen 151 RWAFLISA 158 (352)
T ss_dssp CCHHHHHH
T ss_pred cccccccc
Confidence 87766544
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-09 Score=95.73 Aligned_cols=318 Identities=16% Similarity=0.087 Sum_probs=181.7
Q ss_pred HhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010350 128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV 207 (512)
Q Consensus 128 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (512)
.+...-+|++-.+.+.+|+-..++|.+.-..+...+++..+.|-++||.|||+..+.-++.+.++++- -.++.+-.++
T Consensus 51 AgDWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiT--KhSpqYkVLm 128 (454)
T KOG4332|consen 51 AGDWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCIT--KHSPQYKVLM 128 (454)
T ss_pred hhhhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHh--hcCCceEEEe
Confidence 34455667777788899999999999888888888889999999999999999876655555554422 2455567899
Q ss_pred HHHHHHHhhcccchhhHHHHH-HhhcCccchhhHHHHHH--------hhhhhHHHHHhhhhHHhccccC--chHHHHHHH
Q 010350 208 LSRVLVGIGEGVSPSAATDLI-ARSIPLEERSRAVSFVF--------GGLSFGSVAGLLLAPPIIENLG--WESVFYIFG 276 (512)
Q Consensus 208 ~~r~l~G~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~--------~~~~~g~~~~~~~~~~l~~~~g--w~~~f~~~~ 276 (512)
++|.+.|+..+..+....++. +|.- ++|+.-.-+.. .+..+-.+++.+.+..+++.++ --.+|-..+
T Consensus 129 VGR~LGGiaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAa 206 (454)
T KOG4332|consen 129 VGRVLGGIATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAA 206 (454)
T ss_pred ehhhhhhHHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence 999999999998888777654 4443 34443222221 2334445566666666666543 444554433
Q ss_pred HHHHHH-HHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHH
Q 010350 277 LLGIAW-FSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355 (512)
Q Consensus 277 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (512)
.+..+. .+..--..|+-.+...+ + +.. ++. +.....+..++++.++.-+..++-..+|++
T Consensus 207 cfLaigmAvil~~W~ENygdps~~---k-dll---tqf------------~gaa~aiaSD~ki~LLG~iqsLFE~smytF 267 (454)
T KOG4332|consen 207 CFLAIGMAVILSSWSENYGDPSEN---K-DLL---TQF------------KGAARAIASDEKIALLGAIQSLFEGSMYTF 267 (454)
T ss_pred HHHHHHHHHHHhhhhhccCChhhh---H-HHH---HHh------------hHhHHHHhcchHHHHHHHHHHHHhhhhhee
Confidence 332222 22221222221111000 0 000 000 001134566777777666666666666665
Q ss_pred HHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHh----hcc
Q 010350 356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLS----SID 431 (512)
Q Consensus 356 ~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 431 (512)
.....+-+.. +-...--|++++-+.+.+.+|+-+..++..|-..| . .... .+.++.....+.+. ...
T Consensus 268 VFLWTPaLsp--n~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~-v-----e~ym-qivf~vs~a~l~Lpilt~~vs 338 (454)
T KOG4332|consen 268 VFLWTPALSP--NDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPK-V-----ESYM-QIVFLVSIAALLLPILTSSVS 338 (454)
T ss_pred eeeecccCCC--CcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcc-c-----chHH-HHHHHHHHHHHHHHHHHhccC
Confidence 5433333321 11122237788888888888888777776653221 1 1111 12222222222111 111
Q ss_pred C--CCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHH
Q 010350 432 L--GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITN 477 (512)
Q Consensus 432 ~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 477 (512)
+ ..+.....++.+.-.+.|.+++.+..+-.+.+|++.|++.+-+..
T Consensus 339 P~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 339 PSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred CCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhhee
Confidence 1 223344556666667778888888888888899999988765543
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-09 Score=107.98 Aligned_cols=154 Identities=19% Similarity=0.174 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcc-cCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 192 (512)
+.+..+.+..++............+.+.++ +|.+ ...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~ 303 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALG 303 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHH
Confidence 344455555666666666666666665444 4544 67788888999999999999999999999999999999999998
Q ss_pred HHHHHHhh-hhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCc-------cchhhHHHHHHhhhhhHHHHHhhhhHHhcc
Q 010350 193 TALLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL-------EERSRAVSFVFGGLSFGSVAGLLLAPPIIE 264 (512)
Q Consensus 193 ~~~~~~~~-~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 264 (512)
.++..+.. ++.+.+++..++.|++.+...+...++++|..+. ++.|..+|.++....+|..+++.+.+.+.+
T Consensus 304 ~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 304 FLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 88776555 5778999999999999999999999999998863 345888999999999999999999998876
Q ss_pred ccCc
Q 010350 265 NLGW 268 (512)
Q Consensus 265 ~~gw 268 (512)
..|+
T Consensus 384 ~~Gy 387 (428)
T PF13347_consen 384 LVGY 387 (428)
T ss_pred HhCc
Confidence 5543
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-06 Score=85.35 Aligned_cols=273 Identities=11% Similarity=0.006 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCC-----CchhhHHHHHHHHHHHHHh-hhhhhhhhhhcCCchHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGW-----NSSVAGLVQSSFFWGYALS-QLPGGWLAKIFGGRKVLQTGVL 187 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----s~~~~~~~~s~~~~~~~~~-~~~~g~l~dr~g~r~~~~~~~~ 187 (512)
+.++.+.+.+|+.....+..- .+.|.+.+ ..+.+.++-+...+...+. .++.+++++|++|++++-+...
T Consensus 7 ~k~~~~~l~fF~il~~Y~iLR----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~ 82 (472)
T TIGR00769 7 KKFLPLFLMFFCILFNYTILR----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS 82 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence 444455555555444444333 35555544 4467889988887777766 8999999999999999988777
Q ss_pred HHHHHHHHHHHhh----hh--------------------------HHHHHHHHHHHHhhcccchh-hHHHHHHhhcCccc
Q 010350 188 IWSLATALLPLLA----GF--------------------------MPGLVLSRVLVGIGEGVSPS-AATDLIARSIPLEE 236 (512)
Q Consensus 188 ~~~~~~~~~~~~~----~~--------------------------~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~ 236 (512)
.+.....++++.- +. .|...+..+...+......+ ..+..+.|.++.+|
T Consensus 83 ~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q 162 (472)
T TIGR00769 83 PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE 162 (472)
T ss_pred HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 7666665554330 00 13333444555555566665 88999999999999
Q ss_pred hhhHHHHHHhhhhhHHHHHhhhhHHhcc-------cc-Cch----HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcch
Q 010350 237 RSRAVSFVFGGLSFGSVAGLLLAPPIIE-------NL-GWE----SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRS 304 (512)
Q Consensus 237 r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~-gw~----~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (512)
-.+..+++..+.++|.++++.+..++.+ .. .|. +.+.+.++.+++.+.+..++.+....++.. .+.+
T Consensus 163 akRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 241 (472)
T TIGR00769 163 AKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRS-YNPA 241 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccc-cchh
Confidence 9999999999999999999999888763 11 232 233333333344444444443322111110 0000
Q ss_pred hhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhh----hHHHhhh
Q 010350 305 NYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTE----AAWVSIL 380 (512)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~----~g~~~~~ 380 (512)
+. + .++..+..-...++.++++|-++.+++...+++.....+....-..+++.+ -++.+ .|.+...
T Consensus 242 ~~---~------~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~-p~~~~~~~f~g~~~~~ 311 (472)
T TIGR00769 242 LK---E------KKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQY-PSPNEYSAFMGDFSTW 311 (472)
T ss_pred hc---c------ccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
Confidence 00 0 000000001234678899998888888777776666655554445555543 23322 2334455
Q ss_pred hHHHHHHHHHHHHHHHhHHHH
Q 010350 381 PPLASVLVTSIAAQFADNLIA 401 (512)
Q Consensus 381 ~~~~~~~~~~~~g~l~dr~~~ 401 (512)
.++..++..++.+++.+|+|-
T Consensus 312 ~gi~tl~~~l~~~~l~~~~Gw 332 (472)
T TIGR00769 312 TGVVSVTMMLLSGNVIRKYGW 332 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhhH
Confidence 566666667777888888874
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.7e-09 Score=106.64 Aligned_cols=139 Identities=16% Similarity=0.106 Sum_probs=110.2
Q ss_pred hcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccc
Q 010350 141 SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVS 220 (512)
Q Consensus 141 ~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~ 220 (512)
++.+|.++.+.++..+.+.++..++.++.+++.||+|+|+++..+.++..++..+.. ..++. ..++.-++.|++.+..
T Consensus 287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~-~~~~~-~~~~~~~l~glg~~~i 364 (438)
T PRK10133 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA-FAGGH-VGLIALTLCSAFMSIQ 364 (438)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HcCCh-HHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999888777655554443 33332 2355677899999999
Q ss_pred hhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccC-chHHHHHHHHHHHHHH
Q 010350 221 PSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIFGLLGIAWF 283 (512)
Q Consensus 221 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~ 283 (512)
+|...+...+..++ +.+.+.++.. +..+|..++|.+.|.+.+..| -|..|++..+..+..+
T Consensus 365 ~P~~~s~a~~~~~~-~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 365 YPTIFSLGIKNLGQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_pred HHHHHHHHHcccch-hhccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 99999999998874 5667777775 455788899999999999887 7888876555444433
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.5e-10 Score=111.62 Aligned_cols=153 Identities=14% Similarity=0.086 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhh-hcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHH
Q 010350 116 IGTTSLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA 194 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 194 (512)
+....+..++............|.+ ++.+|.+....++......++..++.++++++.||+|+|+++.++.++..++.+
T Consensus 230 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~ 309 (448)
T PRK09848 230 LFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYL 309 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 3344444444444444455555553 445776665555555555677788999999999999999999999888777766
Q ss_pred HHHHhh-hhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCcc-------chhhHHHHHHhhhhhHHHHHhhhhHHhcccc
Q 010350 195 LLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE-------ERSRAVSFVFGGLSFGSVAGLLLAPPIIENL 266 (512)
Q Consensus 195 ~~~~~~-~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 266 (512)
+..... ++.+.+++..++.|+|.+...+...++.+|..+.+ ++|...|.++....+|..+|+.+.+.+.+..
T Consensus 310 ~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~ 389 (448)
T PRK09848 310 LFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS 389 (448)
T ss_pred HHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 554322 34556677788899999999999999999988754 3588999999999999999999999887665
Q ss_pred Cc
Q 010350 267 GW 268 (512)
Q Consensus 267 gw 268 (512)
|+
T Consensus 390 G~ 391 (448)
T PRK09848 390 GY 391 (448)
T ss_pred CC
Confidence 54
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-09 Score=109.71 Aligned_cols=155 Identities=13% Similarity=0.011 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT 193 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 193 (512)
+.+..+.+..++............+.+.+....+....+++.++..++.+++.+++++++||+|+|+.+.++.++..++.
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~ 310 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSC 310 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 33444444444445555555555566555544456667777777778889999999999999999999998877665555
Q ss_pred HHHHH----hhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcC-------ccchhhHHHHHHhhhhhHHHHHhhhhHHh
Q 010350 194 ALLPL----LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP-------LEERSRAVSFVFGGLSFGSVAGLLLAPPI 262 (512)
Q Consensus 194 ~~~~~----~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 262 (512)
+.... ..++.+.+++.-++.|++.+...+...++++|..+ .+..|...|......-+|..+++.+.|++
T Consensus 311 ~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 311 GVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44322 13445566777788999999999999999999865 33456688999999999999999999998
Q ss_pred ccccCc
Q 010350 263 IENLGW 268 (512)
Q Consensus 263 ~~~~gw 268 (512)
.+..|+
T Consensus 391 l~~~Gy 396 (473)
T PRK10429 391 LGLIGY 396 (473)
T ss_pred HHHcCC
Confidence 875554
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.5e-09 Score=108.74 Aligned_cols=144 Identities=16% Similarity=0.133 Sum_probs=116.5
Q ss_pred HHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHh
Q 010350 121 LAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL 199 (512)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 199 (512)
+..+...........+.|. +++.+|.|+.+.|+......++..++.++.|++.||+|+|+++..+.++.+++..+....
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~ 345 (495)
T PRK14995 266 VMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT 345 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444556665 556689999999999999999999999999999999999999988888777766554332
Q ss_pred h--hhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcc
Q 010350 200 A--GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE 264 (512)
Q Consensus 200 ~--~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 264 (512)
. ++.+...+..++.|++.+...+.....+.+..|+++++.+.++++....+|..+|+.+.+.+.+
T Consensus 346 ~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 346 DFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred cCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3345566788999999999988888888999999999999999999999999999999998765
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.8e-09 Score=102.35 Aligned_cols=139 Identities=16% Similarity=0.114 Sum_probs=92.8
Q ss_pred hhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 010350 135 VAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLV 213 (512)
Q Consensus 135 ~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 213 (512)
...|. +.+++|.+..+.+.+.+...++..++.++.+++.||+|||+.+.++.++..++.++.... .+....+....+.
T Consensus 224 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 302 (392)
T PRK10473 224 NTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALS-PSHAVSLFGITLI 302 (392)
T ss_pred HhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 33444 456789999999999999999999999999999999999999999988877776655433 3323333434444
Q ss_pred HhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHH
Q 010350 214 GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLG 279 (512)
Q Consensus 214 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~ 279 (512)
+.+.+...+.. ...+..|.++|+ +...+...++..+++.+++++.+..|+.....+.+++.
T Consensus 303 ~~g~~~~~~~~--~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~ 363 (392)
T PRK10473 303 CAGFSVGFGVA--MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI 363 (392)
T ss_pred HHHHHHHhHHH--HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 44433333332 233444544443 44445556777778888888887778776555555433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.3e-09 Score=117.90 Aligned_cols=148 Identities=18% Similarity=0.181 Sum_probs=120.0
Q ss_pred hhhhhhhh-hhcccCCCch-hhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 010350 132 NLSVAIIP-MSHRFGWNSS-VAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS 209 (512)
Q Consensus 132 ~~~~~~~~-~~~~~g~s~~-~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (512)
.+...+|. +.+.+|.+.. +.+++.+...++.+++.+++|+++||+++++++.++.++.+++.++.. ...+.+.++++
T Consensus 250 ~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 328 (1146)
T PRK08633 250 LAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLP-TAPSLASVLVL 328 (1146)
T ss_pred HHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHH-HhhhHHHHHHH
Confidence 33444444 5677899998 999999999999999999999999999999999888887777776664 34466777888
Q ss_pred HHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcc-ccCchHHHHHHHHHHH
Q 010350 210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-NLGWESVFYIFGLLGI 280 (512)
Q Consensus 210 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~gw~~~f~~~~~~~~ 280 (512)
.++.|++.+...+...+++.+..|++.|++++|+.+....+|.++++.+++.+.. .+++...|++.+.+.+
T Consensus 329 ~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 329 FFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL 400 (1146)
T ss_pred HHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 8999999999888899999999999999999999999999999888888876654 2355566666555443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-07 Score=89.02 Aligned_cols=323 Identities=15% Similarity=0.123 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhh
Q 010350 152 GLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARS 231 (512)
Q Consensus 152 ~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~ 231 (512)
+.+.-+-.+...+..+++.+..+|+..+.-..+..++..++.++.+ .+++.+.-+++-.+.+++.|........+.+ .
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va-~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~ 139 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVA-FSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-F 139 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhhee-eccchhHHHHHHHHHhhhhhhhHHHHHHHHH-h
Confidence 3355555567777888888999998766555566667777776664 5677788889999999999988888777644 5
Q ss_pred cCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccC--chHHHHHHHHHHHHHHHHHH-hhccCCCCCCCCCCcchhhhh
Q 010350 232 IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG--WESVFYIFGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYIN 308 (512)
Q Consensus 232 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--w~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 308 (512)
+++ ...+-+.++.+.++++|+..--.+.+ .| -|..+.+...+.++..+.++ .++.+++.......+.+...+
T Consensus 140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~~~ 214 (402)
T PF02487_consen 140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDEAE 214 (402)
T ss_pred cCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCCccc
Confidence 553 35788888888899998887766665 55 47677777766655544433 444433322211111111100
Q ss_pred hhhhhhhhHHh-hcCCCCCccHHHHh-hcHhHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhcCCC-hhhhHHHhhhhHHH
Q 010350 309 MKKSLSASLEE-MGESLKDVPWKAIF-RSKAVWAMIYAHFCGSWGHYTCL-SWLPTYFSEELSLN-LTEAAWVSILPPLA 384 (512)
Q Consensus 309 ~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~l~~~~g~s-~~~~g~~~~~~~~~ 384 (512)
++....+.++ ..+...+..+++-+ +-|......+-.+..++..|.+. ...|...-..-..+ ..+..++.....++
T Consensus 215 -~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ~G 293 (402)
T PF02487_consen 215 -DDLLESETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQLG 293 (402)
T ss_pred -ccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHHHH
Confidence 0000000000 11111122222211 12222223334444455555543 23333321111122 22333444555555
Q ss_pred HHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhh-cc-CCCChHHHHHHHHHHHHHHHhhhhhhhhHhh
Q 010350 385 SVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS-ID-LGLPHWEIVGILTAGLALSSFALSGLYCTHQ 462 (512)
Q Consensus 385 ~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 462 (512)
..+++--...+ |+ | +.+.+.+.-.+-.+.+++-. .. .++.+..++..+..|+..|..+......+.+
T Consensus 294 VFISRSS~~~~--ri--r-------~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~ 362 (402)
T PF02487_consen 294 VFISRSSLPFF--RI--R-------RLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISE 362 (402)
T ss_pred Hhhhhcceeee--eh--h-------hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 55544332211 11 1 11222222111111111111 11 1222333445666788888888888888888
Q ss_pred hcCcchhHHHHHHHHhhhchhhhhHHhhhhh
Q 010350 463 DISPEYASILLGITNTVGAVPGIVGVALTGY 493 (512)
Q Consensus 463 ~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~ 493 (512)
..++++|-.++|.......+|..++..++=.
T Consensus 363 ~~~~~~REFslg~vsvsds~GI~lAgll~l~ 393 (402)
T PF02487_consen 363 EVPPEDREFSLGAVSVSDSLGILLAGLLGLP 393 (402)
T ss_pred cCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8999999999999998888888877766533
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.2e-09 Score=106.44 Aligned_cols=158 Identities=15% Similarity=0.169 Sum_probs=121.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhH
Q 010350 340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFL 419 (512)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 419 (512)
.+.+..++...........+|.+.+ .+|.+..+.+++.+...++..++.++.|++.||+|+| .....+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~~~~ 75 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAG-DLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTR---------RLFLISTF 75 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcH---------HHHHHHHH
Confidence 4445555566666667777888775 4799999999999999999999999999999999864 23333434
Q ss_pred HHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccC
Q 010350 420 SPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTH 499 (512)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g 499 (512)
+..+...+.... .+....++..++.|++.+...+.......+.+|+++|+++.|+......+|..++|.++|++.+..|
T Consensus 76 ~~~~~~~~~~~~-~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 154 (485)
T TIGR00711 76 AFTLGSLLCGVA-PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH 154 (485)
T ss_pred HHHHHHHHHhCc-CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC
Confidence 434433333332 3344556666777888777777777888888999999999999999999999999999999999887
Q ss_pred cceEEEEecC
Q 010350 500 SWSVSYQCPP 509 (512)
Q Consensus 500 ~~~~~f~~~~ 509 (512)
|++.|++.+
T Consensus 155 -w~~~f~~~~ 163 (485)
T TIGR00711 155 -WRWIFLINV 163 (485)
T ss_pred -ceehhhhhh
Confidence 998887654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.8e-09 Score=98.99 Aligned_cols=279 Identities=12% Similarity=0.068 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh----cCCchHHHHHHH-HH
Q 010350 115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRKVLQTGVL-IW 189 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~g~r~~~~~~~~-~~ 189 (512)
.++.++...+...++...=..+.+++.++.|++....+.+.-..-+...+.+++.|..+|| |||||.++.... ..
T Consensus 33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i 112 (498)
T KOG0637|consen 33 KLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLI 112 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHH
Confidence 3444444444556666666777888889999999998888888888888999999999995 899888776543 33
Q ss_pred HHHHHHHHHhhhh----------------HHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhh-HHHHHHhhhhhHH
Q 010350 190 SLATALLPLLAGF----------------MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR-AVSFVFGGLSFGS 252 (512)
Q Consensus 190 ~~~~~~~~~~~~~----------------~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~ 252 (512)
.++..++.+.++- ...+++.-.+.=++.-......-+++.|....+++.+ +++.+.....+|+
T Consensus 113 ~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGn 192 (498)
T KOG0637|consen 113 AVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGN 192 (498)
T ss_pred HHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcc
Confidence 4444444332211 1123344444445566777788899999997777766 9999999999999
Q ss_pred HHHhhhhHHhccccCchHH--HHH-------HHHHHHHHHHHH-HhhccCCCC-CCCCCCcch---hhhhhhhhhhhhHH
Q 010350 253 VAGLLLAPPIIENLGWESV--FYI-------FGLLGIAWFSGF-KILQEGETS-NGATLAPRS---NYINMKKSLSASLE 318 (512)
Q Consensus 253 ~~~~~~~~~l~~~~gw~~~--f~~-------~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~ 318 (512)
.+|..++++. +|+-. |.. +..+-...+.-. +..+++... ...+.+++. ...+.+.......+
T Consensus 193 vLGY~~g~y~----~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~ 268 (498)
T KOG0637|consen 193 VLGYALGSYL----GLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKGTTARSKSSKLPFLL 268 (498)
T ss_pred eeeeeccccc----CceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCcccccccccCcchHH
Confidence 9999988743 33321 111 111111111111 111111100 000000000 00000000000000
Q ss_pred hhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHH-hcCCChhh----------------hHHHhhhh
Q 010350 319 EMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSE-ELSLNLTE----------------AAWVSILP 381 (512)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~g~s~~~----------------~g~~~~~~ 381 (512)
+... .-....|..|.+++...+.+.+...+..|...++-+ .++-++.. ..+=..+.
T Consensus 269 e~fG-------~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~in 341 (498)
T KOG0637|consen 269 EIFG-------ALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLN 341 (498)
T ss_pred HHhc-------hHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHH
Confidence 0000 111235778888999999988888888888877743 33332211 12233455
Q ss_pred HHHHHHHHHHHHHHHhHHHHcCC
Q 010350 382 PLASVLVTSIAAQFADNLIATGV 404 (512)
Q Consensus 382 ~~~~~~~~~~~g~l~dr~~~~~~ 404 (512)
.+...+.+....++.+|+|.|++
T Consensus 342 s~~lgi~S~~~~~l~~~~g~r~~ 364 (498)
T KOG0637|consen 342 SIVLGIYSLLVEKLSRKFGTRKR 364 (498)
T ss_pred HHHHHHHHHHHHHHHHhcCcceE
Confidence 56666677777888888885543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-09 Score=100.09 Aligned_cols=131 Identities=12% Similarity=0.061 Sum_probs=97.5
Q ss_pred HHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhh
Q 010350 160 WGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR 239 (512)
Q Consensus 160 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~ 239 (512)
+.-.-|.++.+++.||+|||+.+..+.++++++.++.....+. ....+..|..-++.++.+.+.+.|..|.+|...|+.
T Consensus 392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~r-n~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTR-NAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCc-chhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 3445688999999999999999999999999988766433222 333333344444455666777889999999999999
Q ss_pred HHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHhhccCC
Q 010350 240 AVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGE 293 (512)
Q Consensus 240 ~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~ 293 (512)
+.|....+.-+|+++.|+++ +.....-..+..+.+.+.++..+..+++|-+.
T Consensus 471 gvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred chhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeecc
Confidence 99999999999999999999 33334445556666666666666666776543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.3e-08 Score=91.43 Aligned_cols=171 Identities=15% Similarity=0.048 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc-CCchHHHHHHHHHHHHHHH
Q 010350 117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWSLATAL 195 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~ 195 (512)
+.+.+.+-++....++...++|.+..|.|+|..+.|++.+...+......+....+.+|. .+|+..+...+++.++...
T Consensus 211 W~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G 290 (395)
T COG2807 211 WQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVG 290 (395)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 334444445556667777899999999999999999999999999999999999999965 4566666666666666665
Q ss_pred HHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhc-CccchhhHHHHHHhhhhhHHHHHhhhhHHhcccc-CchHHHH
Q 010350 196 LPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFY 273 (512)
Q Consensus 196 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-gw~~~f~ 273 (512)
+.+...+ ..+...++.|+|.+..++...+.+.+.. ++++-++-.++.+..+++=..+||.+.|++.|.. +|+...+
T Consensus 291 ~~~~P~~--~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~ 368 (395)
T COG2807 291 LLLAPGQ--LPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLV 368 (395)
T ss_pred HHHhhhh--HHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHH
Confidence 5444333 2222259999999999999999999887 4566777888888888899999999999999976 4998888
Q ss_pred HHHHHHHHHHHHHHhh
Q 010350 274 IFGLLGIAWFSGFKIL 289 (512)
Q Consensus 274 ~~~~~~~~~~~~~~~~ 289 (512)
..+...++..+.-+..
T Consensus 369 ~l~~~~i~m~i~Gl~a 384 (395)
T COG2807 369 LLALATLLMLIFGLRA 384 (395)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 8877776665554443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.5e-08 Score=98.29 Aligned_cols=142 Identities=16% Similarity=0.109 Sum_probs=111.3
Q ss_pred hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccc
Q 010350 140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGV 219 (512)
Q Consensus 140 ~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~ 219 (512)
+++.+|.+..+.|++.+...++..++.++.+++.||.++|+++..+.+ .++...+.. ..++++...+..++.|++.+.
T Consensus 232 ~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~-~~~~~~~~~~~~~~~G~~~g~ 309 (393)
T PRK11195 232 APVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMA-LQHSLLPAYPLLILIGALGGF 309 (393)
T ss_pred HHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHH-HHhHHHHHHHHHHHHHHhhhh
Confidence 456689999999999999999999999999999999999988887753 344443333 345556667778889999888
Q ss_pred chhhHHHHHHhhcCccc-hhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHH
Q 010350 220 SPSAATDLIARSIPLEE-RSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFS 284 (512)
Q Consensus 220 ~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~ 284 (512)
..+...+.+.+..|++. +|++.++.+....+|..++..+.+.+ +.+|-++.+++.++..++.+.
T Consensus 310 ~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 374 (393)
T PRK11195 310 FVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALA 374 (393)
T ss_pred hhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHH
Confidence 88888888888766554 79999999999999999999998855 567877777775555444433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=116.31 Aligned_cols=162 Identities=12% Similarity=0.031 Sum_probs=123.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHH
Q 010350 119 TSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP 197 (512)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 197 (512)
+.+..+...+....+....|. +.+.+|.+..+.|++.+.+.++.+++.++.|+++|+.++++.+..+.++.+++.+.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~ 309 (1140)
T PRK06814 230 AILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLA 309 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHH
Confidence 333333333344444445666 4556899999999999999999999999999999988877766666555555544333
Q ss_pred Hh-------------------hhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhh
Q 010350 198 LL-------------------AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL 258 (512)
Q Consensus 198 ~~-------------------~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 258 (512)
+. ..+.+.+++..++.|++.+...+...+++.+..|++.||+++|..+....+|..+++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~ 389 (1140)
T PRK06814 310 FASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTII 389 (1140)
T ss_pred hcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHH
Confidence 21 14456777888899999999999999999999999999999999999999999999999
Q ss_pred hHHhcc-ccCchHHHHHHHHHHH
Q 010350 259 APPIIE-NLGWESVFYIFGLLGI 280 (512)
Q Consensus 259 ~~~l~~-~~gw~~~f~~~~~~~~ 280 (512)
++.+.+ ..++.+.+++.+++.+
T Consensus 390 ~g~l~~~~~~~~~~~~~~~~~~~ 412 (1140)
T PRK06814 390 LALLQALGFSIPWIILFIALANL 412 (1140)
T ss_pred HHHHHHhccCHHHHHHHHHHHHH
Confidence 998874 4567777766555433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-08 Score=103.44 Aligned_cols=141 Identities=10% Similarity=0.054 Sum_probs=101.1
Q ss_pred HhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHh-hhhHHHH
Q 010350 128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL-AGFMPGL 206 (512)
Q Consensus 128 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 206 (512)
......+...+.+.++.--+....+.+.....+..+++.+++++++||+|+|+.+.++.++..++....... .++.+.+
T Consensus 243 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (444)
T PRK09669 243 TAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLI 322 (444)
T ss_pred HHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHH
Confidence 333333333344333332233444556666677788889999999999999999998877655444322222 3455667
Q ss_pred HHHHHHHHhhcccchhhHHHHHHhhcCc-------cchhhHHHHHHhhhhhHHHHHhhhhHHhccccCc
Q 010350 207 VLSRVLVGIGEGVSPSAATDLIARSIPL-------EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW 268 (512)
Q Consensus 207 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw 268 (512)
++..++.|++.+...+..+++++|..+. +..|...+.++....+|..+|+.++|.+.+..|+
T Consensus 323 ~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 323 FALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8888899999999999999999998852 3346678888889999999999999999887665
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=100.52 Aligned_cols=159 Identities=14% Similarity=0.138 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHH
Q 010350 337 AVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTI 416 (512)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 416 (512)
.+|...+..++.....+....++|.++++.+|.+..+.+++.+...++..++.++.|++.||+|+| ..+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~ 72 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPR---------YTTTL 72 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCch---------HHHHH
Confidence 356666777777777788889999878888999999999999999999999999999999999864 22333
Q ss_pred HhHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhccc
Q 010350 417 AFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLD 496 (512)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~ 496 (512)
+.+...+...+......+....++..++.|++.+ ........+.+..++++|+.+.++.....++|..+++.+++.+.+
T Consensus 73 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 73 SLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4444444433333322123334455566666544 334455566777889999999999998888888888888776665
Q ss_pred cc---------CcceEEE
Q 010350 497 ST---------HSWSVSY 505 (512)
Q Consensus 497 ~~---------g~~~~~f 505 (512)
.. .+|++.|
T Consensus 152 ~~~~~~~~~~~~~w~~~~ 169 (366)
T TIGR00886 152 SLIFGAGLPAHLAWGWAF 169 (366)
T ss_pred HHHhcccccccccccchh
Confidence 21 1388777
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=99.83 Aligned_cols=125 Identities=15% Similarity=0.110 Sum_probs=99.7
Q ss_pred HHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHH-HHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhh---
Q 010350 125 ICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFF-WGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA--- 200 (512)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~-~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--- 200 (512)
+............|.+.+++|.+..+.+.+.++.. ++..++.+++|++.||+|||+.+.++.++.+++..+.....
T Consensus 220 ~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 299 (356)
T TIGR00901 220 LYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNG 299 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444445556666666669999999998887665 57789999999999999999999888887777665544332
Q ss_pred -------hhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhh
Q 010350 201 -------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLS 249 (512)
Q Consensus 201 -------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 249 (512)
++.+.+..+.++.+++.+...+...+++.+.+|+++|++.+|++++..+
T Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 300 HHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred cccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 2346677788899999999999999999999999999999999887654
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.2e-12 Score=127.40 Aligned_cols=182 Identities=21% Similarity=0.125 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 191 (512)
+++.+..+.+..+....+......+.+.+.++.+.+.. -+......+...++.++...+.||+|||++++.+..+.++
T Consensus 251 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~ 328 (451)
T PF00083_consen 251 RKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAI 328 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccc
Confidence 34444444444444444555566667778888887777 2222233345556777778999999999999999888777
Q ss_pred HHHHHH---Hh-hhh----HHHHHHHHHHHHhhcc-cchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHh
Q 010350 192 ATALLP---LL-AGF----MPGLVLSRVLVGIGEG-VSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI 262 (512)
Q Consensus 192 ~~~~~~---~~-~~~----~~~~~~~r~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 262 (512)
+....+ .. .++ -...+++-.+..++.+ ...+..+.+.+|.+|.+.|+.+.++......++.++++.+...+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~ 408 (451)
T PF00083_consen 329 CSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYL 408 (451)
T ss_pred cccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 666553 11 111 0112222222222222 34466668889999999999999999999999999999999888
Q ss_pred ccccCchHHHHHHHHHH-HHHHHHHHhhccCCCC
Q 010350 263 IENLGWESVFYIFGLLG-IAWFSGFKILQEGETS 295 (512)
Q Consensus 263 ~~~~gw~~~f~~~~~~~-~~~~~~~~~~~~~~~~ 295 (512)
.+..+-...+++.+.++ +..++..+++||++.+
T Consensus 409 ~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~ 442 (451)
T PF00083_consen 409 FNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGK 442 (451)
T ss_pred cccccccccchhhHHHHHHHHhheeEEEeeCCCC
Confidence 88777333455544444 4445566677887654
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.2e-08 Score=96.91 Aligned_cols=138 Identities=11% Similarity=0.084 Sum_probs=103.7
Q ss_pred hhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHh----hhhHHHHHH
Q 010350 133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL----AGFMPGLVL 208 (512)
Q Consensus 133 ~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 208 (512)
+....|.+.+++|.+..+.++......++..++.++.+++.||+|+|+.+....+..+++....... .++...+++
T Consensus 222 ~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (401)
T PRK11043 222 WLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLI 301 (401)
T ss_pred HHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Confidence 3445677777889999999998888888999999999999999999987766555444433222111 233344556
Q ss_pred HHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHH
Q 010350 209 SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV 271 (512)
Q Consensus 209 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~ 271 (512)
...+.|++.+...+...+...+..| +++++++|+++.....+...++.+.+.+.+.......
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~ 363 (401)
T PRK11043 302 PFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLTTG 363 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHH
Confidence 6677888888888888887777776 6899999999999888889999999988875444433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.3e-09 Score=104.15 Aligned_cols=180 Identities=13% Similarity=0.049 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCC---------chHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG---------RKVLQ 183 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~---------r~~~~ 183 (512)
..++.+.++.+....+...+..+.|. +.+-+|++..+.|++.++..+...+..+++|.++||.-+ |..-.
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence 45667777788888888889999998 556689999999999999999999999999999998755 33334
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhc
Q 010350 184 TGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII 263 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 263 (512)
++....+++.+++++.........+..+..+.+..+....+...-.....++.-+..+|+.+....+..+++|.+.+.+.
T Consensus 338 i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~ 417 (466)
T KOG2532|consen 338 IAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIV 417 (466)
T ss_pred HHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEe
Confidence 45555555555555444322212222222223333333333332222214478899999999999999999999999999
Q ss_pred cc---cCchHHHHHHHHHHHHHHHHHHhhccCC
Q 010350 264 EN---LGWESVFYIFGLLGIAWFSGFKILQEGE 293 (512)
Q Consensus 264 ~~---~gw~~~f~~~~~~~~~~~~~~~~~~~~~ 293 (512)
++ ..|+++|++.+++.++..+.+.++-..+
T Consensus 418 ~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e 450 (466)
T KOG2532|consen 418 TDNTREEWRIVFLIAAGILIVGNIIFLFFGSGE 450 (466)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhchheeEeecCc
Confidence 53 3699999999998888776665554333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.8e-08 Score=97.51 Aligned_cols=133 Identities=16% Similarity=0.052 Sum_probs=90.7
Q ss_pred Hhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHH---hhhhH
Q 010350 128 MDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL---LAGFM 203 (512)
Q Consensus 128 ~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---~~~~~ 203 (512)
.....+....|. +.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+..+..+..+..+.... ...+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (377)
T PRK11102 208 AGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGF 287 (377)
T ss_pred HHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 333344444454 55668999999999999999999999999999999999999998887654433322211 12233
Q ss_pred HHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhh-hhhHHHHHhhhhHH
Q 010350 204 PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGG-LSFGSVAGLLLAPP 261 (512)
Q Consensus 204 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~ 261 (512)
+.+.++..+.+.+.+...+.....+.|..| ++++.+.++.+.. ..+|..+++++++.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~ 345 (377)
T PRK11102 288 WALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA 345 (377)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444455555555566667777766 8899999987664 45777777776553
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-06 Score=83.55 Aligned_cols=160 Identities=33% Similarity=0.484 Sum_probs=125.9
Q ss_pred HHHHHHhhhhhhhhhhhhhcccCCCc--hhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhh
Q 010350 123 FVICNMDKVNLSVAIIPMSHRFGWNS--SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA 200 (512)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~g~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 200 (512)
.+....+........+.+..+++.+. ...++..+.+.++..++.++.|.+.||+|||+.+..+.....++.++.....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
T COG0477 11 ALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP 90 (338)
T ss_pred HHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc
Confidence 33444666667777888877777666 5889999999999999999999999999999888888765444444443333
Q ss_pred h-hHHHHHHHHHHHHhhcccchhhHHHHHHhhcCc-cchhhHHHHHHh-hhhhHHHHHhhhhHHhccc--cCchHHHHHH
Q 010350 201 G-FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL-EERSRAVSFVFG-GLSFGSVAGLLLAPPIIEN--LGWESVFYIF 275 (512)
Q Consensus 201 ~-~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~--~gw~~~f~~~ 275 (512)
. +.+.+++.|++.|++.+...+...+++.+++++ ++|+...+.... ...+|..++|.+++.+... .+||+.|++.
T Consensus 91 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (338)
T COG0477 91 NVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLA 170 (338)
T ss_pred cchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3 478899999999999999999999999999997 678999998888 5888889998888777654 6799977666
Q ss_pred HHHHHHH
Q 010350 276 GLLGIAW 282 (512)
Q Consensus 276 ~~~~~~~ 282 (512)
.......
T Consensus 171 ~~~~~~~ 177 (338)
T COG0477 171 ALLGLLL 177 (338)
T ss_pred HHHHHHH
Confidence 6555433
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.1e-08 Score=96.71 Aligned_cols=157 Identities=11% Similarity=0.092 Sum_probs=117.7
Q ss_pred HHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchh
Q 010350 331 AIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVR 410 (512)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~ 410 (512)
+++.++.+..+++..++.+++...+.+++=-++++ ++..+..-|.+.+.-..+.++.-++.+++.+|+|+-+
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~------- 437 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVN------- 437 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccc-------
Confidence 45667777777777777778888888888778876 4777777787888888899999999999999998542
Q ss_pred HHHHHHHhHHHHHHHHHhhccCCCChHHHH-HHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhh-chhhhhHH
Q 010350 411 KICQTIAFLSPAVCMTLSSIDLGLPHWEIV-GILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVG-AVPGIVGV 488 (512)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~lg~~i~p 488 (512)
.+.+++.....=++.+. .-.++|.++ .-++-|+..+..+.....++....||+.++++.|+..... ++|-.+|+
T Consensus 438 --v~~lgLa~~~~Rf~~~S--~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gs 513 (618)
T KOG3762|consen 438 --VMYLGLACNVGRFLYYS--YLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGS 513 (618)
T ss_pred --eeeehhhHHHHHHHHHH--HhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhh
Confidence 22222222222222222 223445444 4477888889899998899999999999999999998665 79999999
Q ss_pred hhhhhcccccC
Q 010350 489 ALTGYLLDSTH 499 (512)
Q Consensus 489 ~i~G~l~~~~g 499 (512)
+|+|.+.+.+|
T Consensus 514 lIGG~~v~~fg 524 (618)
T KOG3762|consen 514 LIGGFVVERFG 524 (618)
T ss_pred hhhhhhheeeh
Confidence 99999999887
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.3e-08 Score=95.93 Aligned_cols=142 Identities=17% Similarity=0.090 Sum_probs=103.5
Q ss_pred hhhhhhhhhhccc--CCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 010350 132 NLSVAIIPMSHRF--GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS 209 (512)
Q Consensus 132 ~~~~~~~~~~~~~--g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (512)
....+++.+.++. +.+....+...+.+.....++.++.+++.||+++|+++.++.++..+..++... .+. ...+++
T Consensus 250 ~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~-~~~-~~~~~~ 327 (410)
T TIGR00885 250 MCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF-AGG-HVGLYC 327 (410)
T ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-cCC-hHHHHH
Confidence 3445566654443 444555566777777888999999999999999999998888877777666543 333 234677
Q ss_pred HHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcccc------CchHHHHHHHH
Q 010350 210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL------GWESVFYIFGL 277 (512)
Q Consensus 210 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------gw~~~f~~~~~ 277 (512)
-++.|++.+..+|...+...+..+++......++.. ..+|+++.|++.|++.|+. +.+..|++..+
T Consensus 328 l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~--~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~ 399 (410)
T TIGR00885 328 LTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM--AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLL 399 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH--HHhccchHHHHHHHHHHHhcccccCccchHHHHHHH
Confidence 788899999999999999999998555433333333 3499999999999999954 47777776443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-08 Score=97.10 Aligned_cols=156 Identities=15% Similarity=0.146 Sum_probs=121.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhh-hcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS 190 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 190 (512)
+++.+..+++.+++.....++.+.....+ .-.+|.+.....+.......+..++.+++.++.+|+|+|+++.++.++..
T Consensus 234 ~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~ 313 (467)
T COG2211 234 KNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLA 313 (467)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHH
Confidence 34445555556666666666666666653 33456667777778888888888889999999999999999999999999
Q ss_pred HHHHHHHHhh-hhHHHHHHHHHHHHhhcccchhhHHHHHHhhcC-------ccchhhHHHHHHhhhhhHHHHHhhhhHHh
Q 010350 191 LATALLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP-------LEERSRAVSFVFGGLSFGSVAGLLLAPPI 262 (512)
Q Consensus 191 ~~~~~~~~~~-~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 262 (512)
++.++..+.. ++...+++..++.+++.+...+..+++++|..+ .+.-|...+......-+|.+++..+.|++
T Consensus 314 i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~ 393 (467)
T COG2211 314 VGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWI 393 (467)
T ss_pred HHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888775554 456778888899999999999999999998774 23346777888888888999999888888
Q ss_pred ccccC
Q 010350 263 IENLG 267 (512)
Q Consensus 263 ~~~~g 267 (512)
....|
T Consensus 394 L~~~G 398 (467)
T COG2211 394 LGAIG 398 (467)
T ss_pred HHHcC
Confidence 76554
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.2e-09 Score=99.64 Aligned_cols=186 Identities=12% Similarity=0.023 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHH--------HHHHH-HHHHHHhhhhhhhhhhhcCCchHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGL--------VQSSF-FWGYALSQLPGGWLAKIFGGRKVLQT 184 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~--------~~s~~-~~~~~~~~~~~g~l~dr~g~r~~~~~ 184 (512)
+.+...+..+|+..+..+..+.....+.+..|+.+.+... ...+. ..++..+-.+...++|+.|||++.+-
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 4555667777777777777777777788877765544333 11222 22233366677889999999999999
Q ss_pred HHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHhh-cccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhH
Q 010350 185 GVLIWSLATALLPLLAG---FMPGLVLSRVLVGIG-EGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAP 260 (512)
Q Consensus 185 ~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 260 (512)
+.+++++..+..+..-+ +...++++..+..++ .-+.......+-+|.+|.+-|+.+.|+..+.+-+|+++|.....
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 99999888876653222 112233333333222 22333445567789999999999999999999999999999999
Q ss_pred Hhcc-----ccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 010350 261 PIIE-----NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGAT 299 (512)
Q Consensus 261 ~l~~-----~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (512)
++.+ ..|.|+.+++.+.++++..+..+++||++.+...+
T Consensus 464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~lee 507 (538)
T KOG0252|consen 464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSLEE 507 (538)
T ss_pred HhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccCHHH
Confidence 9999 78999999999999999998888999776554433
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.4e-08 Score=93.97 Aligned_cols=164 Identities=16% Similarity=0.197 Sum_probs=125.7
Q ss_pred HHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHH--HHHHHHHHHHHHHHHHhhh
Q 010350 125 ICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVL--QTGVLIWSLATALLPLLAG 201 (512)
Q Consensus 125 ~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~--~~~~~~~~~~~~~~~~~~~ 201 (512)
...+.....-|.++. +.|.+..+..++|+..--..+.+.++..+.|.++||++..+++ ..+++..++.+.... .++
T Consensus 281 ~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP-~~~ 359 (464)
T KOG3764|consen 281 FSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIP-FAT 359 (464)
T ss_pred hccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhH-hhh
Confidence 444566666677776 6677775666999988888999999999999999999943333 344445444444443 456
Q ss_pred hHHHHHHHHHHHHhhcccchhhHHHHHHhhcCcc------chhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHH
Q 010350 202 FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE------ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIF 275 (512)
Q Consensus 202 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~ 275 (512)
++.++++-++..|++.+..............+.+ ..|...++...+..+|.++||.++|.+++..|++|.-.+.
T Consensus 360 ~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~ii 439 (464)
T KOG3764|consen 360 SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTII 439 (464)
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHH
Confidence 6788999999999988888777777777666443 3468899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 010350 276 GLLGIAWFSGFKIL 289 (512)
Q Consensus 276 ~~~~~~~~~~~~~~ 289 (512)
++..++-..++..+
T Consensus 440 g~~n~iyapvl~ll 453 (464)
T KOG3764|consen 440 GILNLIYAPVLLLL 453 (464)
T ss_pred HHHHHHHHHHHHHH
Confidence 98887655444443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.1e-07 Score=88.30 Aligned_cols=166 Identities=19% Similarity=0.170 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcc-cCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 192 (512)
+.+..-.++.|+..-.......+++.+..+ .|.+..+.....+.+..+.++|.++..++..|+...|.+....++..+.
T Consensus 236 ~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill 315 (422)
T COG0738 236 KHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILL 315 (422)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 334444444555445556666777776555 8999999999999999999999999999999999999998887665555
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHH
Q 010350 193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF 272 (512)
Q Consensus 193 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f 272 (512)
++.. ...++ ...+.+-++.|++.+..+|...+...+..+ +.....|..-.+..+|+++.|.+.|++.|+.|-...+
T Consensus 316 ~~~~-~l~~g-~v~~~~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~ 391 (422)
T COG0738 316 LLAV-ALIGG-VVALYALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTF 391 (422)
T ss_pred HHHH-HHhcC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhhhHHHH
Confidence 5444 34555 455667788999999999999999999998 3344555666677899999999999999999988877
Q ss_pred HHHHHHHHHHH
Q 010350 273 YIFGLLGIAWF 283 (512)
Q Consensus 273 ~~~~~~~~~~~ 283 (512)
....+++.+.+
T Consensus 392 ~~~pllc~lyV 402 (422)
T COG0738 392 LIVPLLCYLYV 402 (422)
T ss_pred HHHHHHHHHHH
Confidence 75555544433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-07 Score=95.83 Aligned_cols=122 Identities=7% Similarity=-0.005 Sum_probs=84.5
Q ss_pred CchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhhcccchhhHH
Q 010350 147 NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG-FMPGLVLSRVLVGIGEGVSPSAAT 225 (512)
Q Consensus 147 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~~~~~~~~~ 225 (512)
+....+.+.+.+.++.+++.+++++++||+|+|+.+..+..+.++..++..+... +...+++.-++.|++.+...+..+
T Consensus 261 ~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~ 340 (460)
T PRK11462 261 TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQW 340 (460)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777888888899999999999999999877554444343333322222 222345555677888777777778
Q ss_pred HHHHhhcC-------ccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCc
Q 010350 226 DLIARSIP-------LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW 268 (512)
Q Consensus 226 ~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw 268 (512)
++++|..+ .+..|...+.......+|..+++.++|.+++..|+
T Consensus 341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888776 33345556777788889999999998888765444
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.2e-07 Score=88.99 Aligned_cols=134 Identities=15% Similarity=0.016 Sum_probs=97.6
Q ss_pred hhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHH
Q 010350 134 SVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL--AGFMPGLVLSR 210 (512)
Q Consensus 134 ~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~r 210 (512)
....+. +.+.+|.+..+.+++.....++..++.++.+++.||++++........+.+......... ..+.+.+++..
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPA 306 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 333444 444589999999999999999999999999999999984333322222222222111111 12345677778
Q ss_pred HHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCc
Q 010350 211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW 268 (512)
Q Consensus 211 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw 268 (512)
++.|++.+...+...++..+.+| ++++.+.++.+....+|..+++.+++.+.+...+
T Consensus 307 ~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~ 363 (394)
T PRK11652 307 ALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQF 363 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCchH
Confidence 89999999999999999999887 6889999999999999999999999988765333
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.9e-08 Score=100.71 Aligned_cols=183 Identities=19% Similarity=0.108 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 191 (512)
+++.++.+.+..|.+..+.+.+..+.+.+.+..|.+... .+...+..+...++..+...+.||+|||+.++.+...+.+
T Consensus 293 ~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~ 371 (513)
T KOG0254|consen 293 RKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSI 371 (513)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHH
Confidence 455666777777777777888888899998888887554 5555566667777888889999999999999999999988
Q ss_pred HHHHHHHhhhh------------HHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhh
Q 010350 192 ATALLPLLAGF------------MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259 (512)
Q Consensus 192 ~~~~~~~~~~~------------~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 259 (512)
+.++++..... +..+...-+.......+..+..+.+.+|.+|.+-|+++.++......+...+-....
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~ 451 (513)
T KOG0254|consen 372 CLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFF 451 (513)
T ss_pred HHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 88766533211 112222223333333444467778899999999999999999888888777766665
Q ss_pred HHhccccCchHHHHHHHHHHHHHH--HHHHhhccCCCC
Q 010350 260 PPIIENLGWESVFYIFGLLGIAWF--SGFKILQEGETS 295 (512)
Q Consensus 260 ~~l~~~~gw~~~f~~~~~~~~~~~--~~~~~~~~~~~~ 295 (512)
..+.+..++...|.+.+.++.+.. ...+++||++..
T Consensus 452 ~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~ 489 (513)
T KOG0254|consen 452 PFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGL 489 (513)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCC
Confidence 556555444556665555554443 355566776543
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.3e-08 Score=95.05 Aligned_cols=163 Identities=10% Similarity=0.078 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHH
Q 010350 337 AVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTI 416 (512)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 416 (512)
....+.+.......--+++-..++- .++.+|.+....|++.....+...+.++++|++.||++|+ .++.+
T Consensus 34 ~l~il~~vnlmny~Dr~~iagv~~~-v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~---------~v~~v 103 (493)
T KOG1330|consen 34 TLVILCLVNLMNYADRYTIAGVLKE-VQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRK---------RVIAV 103 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHH-HHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcc---------eEEee
Confidence 3334444445544444444443333 2356899999999999999999999999999999999865 33333
Q ss_pred HhHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhccc
Q 010350 417 AFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLD 496 (512)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~ 496 (512)
+..+-.++.+..... ..-+.+.+.-.+.|++.+...+.....+.+.++.++|++++++.+.+..+|..+|-.+++.+.+
T Consensus 104 G~~iW~~Av~~~~fs-~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~ 182 (493)
T KOG1330|consen 104 GIFIWTLAVFASGFS-NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVAS 182 (493)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeecc
Confidence 333333333322222 1223334556788899999999999999999999999999999999999999999999999999
Q ss_pred ccCcceEEEEecCc
Q 010350 497 STHSWSVSYQCPPR 510 (512)
Q Consensus 497 ~~g~~~~~f~~~~~ 510 (512)
..+.|++.|...++
T Consensus 183 ~~~~Wr~af~~~av 196 (493)
T KOG1330|consen 183 LTFWWRWAFRGSAV 196 (493)
T ss_pred CccceEEEEEeehH
Confidence 99999999998775
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.6e-08 Score=97.81 Aligned_cols=151 Identities=14% Similarity=0.101 Sum_probs=118.8
Q ss_pred hcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhh---------hhHHHHHHHHH
Q 010350 141 SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA---------GFMPGLVLSRV 211 (512)
Q Consensus 141 ~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~ 211 (512)
.+.+|.++.++|++.....++.+++....+++.+|++.|+++.++.++.+++........ ++.+.++...+
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~ 359 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI 359 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence 357899999999999999999999999999999999999999999988877664432111 22234556677
Q ss_pred HHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccC-----chHHHHHHHHHH---HHHH
Q 010350 212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-----WESVFYIFGLLG---IAWF 283 (512)
Q Consensus 212 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-----w~~~f~~~~~~~---~~~~ 283 (512)
+.+++.+....+...++++..|++.++...++..+..++|..+++.+++.+.++.| ++..+....+.. ++.+
T Consensus 360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l 439 (468)
T TIGR00788 360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPL 439 (468)
T ss_pred HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHH
Confidence 88888888888899999999999999999999999999999999999999998877 554444433332 2233
Q ss_pred HHHHhhcc
Q 010350 284 SGFKILQE 291 (512)
Q Consensus 284 ~~~~~~~~ 291 (512)
....++|+
T Consensus 440 ~~~~llP~ 447 (468)
T TIGR00788 440 PLLHLLPR 447 (468)
T ss_pred HHHHhCCC
Confidence 33345564
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=9e-08 Score=93.57 Aligned_cols=162 Identities=17% Similarity=0.114 Sum_probs=136.6
Q ss_pred HHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 010350 127 NMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGL 206 (512)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (512)
+.+...+-.++---.||.|......|........+-++.-++.+++.+|+|+-+++.+++.+..+=.+... ..+|+|+.
T Consensus 384 G~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S-~L~n~W~v 462 (618)
T KOG3762|consen 384 GAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYS-YLQNPWMV 462 (618)
T ss_pred HHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHH-HhcCchhe
Confidence 33334444444445678888888889888888899999999999999999999999999888877776665 55777999
Q ss_pred HHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhh-hhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHH
Q 010350 207 VLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGL-SFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSG 285 (512)
Q Consensus 207 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 285 (512)
+..-+++|+..+.++....+|++...||+.|..+.++..... ++|--+|.++||.+.+.+|-|..|++.++.+++.++.
T Consensus 463 LPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 463 LPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLAL 542 (618)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999977654 6899999999999999999999999999888776655
Q ss_pred HHhh
Q 010350 286 FKIL 289 (512)
Q Consensus 286 ~~~~ 289 (512)
...+
T Consensus 543 ~~~i 546 (618)
T KOG3762|consen 543 FISI 546 (618)
T ss_pred HHHh
Confidence 5443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.2e-08 Score=96.24 Aligned_cols=145 Identities=11% Similarity=0.092 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccC
Q 010350 353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDL 432 (512)
Q Consensus 353 ~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (512)
.....-+|.. .+.++.+....+...+.+.++..++.++.|+++||+|+| ..+..+..+..++.......
T Consensus 33 ~~~~p~l~~i-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr---------~~l~~~~~~~~~~~~~~~~a- 101 (413)
T PRK15403 33 DLIQPGIINV-VRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRR---------PVLITGALIFTLACAATLFT- 101 (413)
T ss_pred HhhccCHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCch---------HHHHHHHHHHHHHHHHHHHc-
Confidence 3344445554 356799999999999999999999999999999999865 23333333333333333332
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEEecC
Q 010350 433 GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCPP 509 (512)
Q Consensus 433 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~~~~ 509 (512)
.+....++..++.|++.+...........+.++++++++++++.+....+|..++|.+++.+.+..| |++.|++.+
T Consensus 102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~f~~~~ 177 (413)
T PRK15403 102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVLFAIIA 177 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHH
Confidence 2334555566777776654444444445566788889999999999999999999999999998876 888876544
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.8e-07 Score=89.55 Aligned_cols=137 Identities=10% Similarity=0.020 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHhcCCChhh-hHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccC
Q 010350 354 TCLSWLPTYFSEELSLNLTE-AAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDL 432 (512)
Q Consensus 354 ~~~~~~p~~l~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (512)
....+...++.+.+|++..+ .|.+...+..+..+..+..|++.||+|.| +.+....+....+.. +..+.
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K--------~vL~l~~l~Wsl~t~-L~~fa- 112 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK--------PVLVLQALSFVCVWL-LLLLG- 112 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHHHHHH-HHHHH-
Confidence 34455555676789999999 99999999999999999999999999864 333333333333333 32222
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceE
Q 010350 433 GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSV 503 (512)
Q Consensus 433 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~ 503 (512)
.....+.+.-++.|++.+... .....+...+|+++|++++|+.++...+|.++++++++++ ..+| |+.
T Consensus 113 ~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll-~s~g-Wr~ 180 (511)
T TIGR00806 113 TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLG-WIS 180 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC-chh
Confidence 123445566788899888877 7777888889999999999999999999999999999994 4455 654
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-06 Score=83.67 Aligned_cols=175 Identities=19% Similarity=0.139 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhh-hcCCchHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK-IFGGRKVLQTGVLIWS 190 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-r~g~r~~~~~~~~~~~ 190 (512)
-++.+..+++..+..++-..++-|+ =-+-||+|..+...+.+....+..++-...|++.. |.+++++-.+++.+..
T Consensus 210 a~~f~~fl~l~t~a~~~QD~iLEPy---gg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~ 286 (403)
T PF03209_consen 210 ARRFFVFLFLGTLAFFMQDVILEPY---GGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGA 286 (403)
T ss_pred hhHHHHHHHHHHHHHHhhHHHcCCc---hhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3455555555444333333333222 24558999999999999999999999999998887 6788888778877766
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccc---
Q 010350 191 LATALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN--- 265 (512)
Q Consensus 191 ~~~~~~~--~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--- 265 (512)
++..+.. ....+.+.+-..-++.|++.|.+.....+.+.++..+++.|..+|.+.....++..++..++|.+.|.
T Consensus 287 ~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~ 366 (403)
T PF03209_consen 287 LAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRA 366 (403)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655442 23345678889999999999999999999999999999999999999999999999999999988762
Q ss_pred -------cCchHHHHHHHHHHHHHHHHHHhh
Q 010350 266 -------LGWESVFYIFGLLGIAWFSGFKIL 289 (512)
Q Consensus 266 -------~gw~~~f~~~~~~~~~~~~~~~~~ 289 (512)
.+|..+|.+.++..++.+++...+
T Consensus 367 ~~~~~~~~aY~~VF~lEa~ll~~a~~ll~~l 397 (403)
T PF03209_consen 367 LFGNSPALAYGVVFALEAVLLLAALVLLGRL 397 (403)
T ss_pred hccCCcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 246677777777666655554433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-05 Score=77.72 Aligned_cols=375 Identities=11% Similarity=0.016 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcc--cCCCchhhHHHHHHHHHHHHHhhhhhhhhhh-----hcCCchHHHHH-HHH
Q 010350 117 GTTSLAFVICNMDKVNLSVAIIPMSHR--FGWNSSVAGLVQSSFFWGYALSQLPGGWLAK-----IFGGRKVLQTG-VLI 188 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-----r~g~r~~~~~~-~~~ 188 (512)
.++.+.++++++-.......+|.+.++ -+.|.+|.+...-+. ..+ -.-++|.|+.| |+||||..++- ..+
T Consensus 3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~-~Pf-SlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l 80 (544)
T PF13000_consen 3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLAS-YPF-SLKLLWAPIVDSVYSKRIGRRKSWIIPIQYL 80 (544)
T ss_pred eHHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeee-chh-HHHHhhhhhhhhhcccccCCcchhhhHHHHH
Confidence 355666777777666655678888887 788888877543222 122 24667777777 78999876653 333
Q ss_pred HHHHHHHHHHhhh------------------h-----HHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHH
Q 010350 189 WSLATALLPLLAG------------------F-----MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVF 245 (512)
Q Consensus 189 ~~~~~~~~~~~~~------------------~-----~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 245 (512)
.++.++..+...+ . ...+...-++.=+..+....+...+.-.+..+++++.+.....
T Consensus 81 ~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqt 160 (544)
T PF13000_consen 81 SGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQT 160 (544)
T ss_pred HHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHH
Confidence 3333333322210 0 0122333334445556666666777777788889998888888
Q ss_pred hhhhhHHHHHhhhhHHhccc-------------cC---chHHHHHHHHHHHHHHHHHHhhccCCCCCCC-CCCcchhhhh
Q 010350 246 GGLSFGSVAGLLLAPPIIEN-------------LG---WESVFYIFGLLGIAWFSGFKILQEGETSNGA-TLAPRSNYIN 308 (512)
Q Consensus 246 ~~~~~g~~~~~~~~~~l~~~-------------~g---w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 308 (512)
.+.++|..++-.+.-.+.+. .| -.....+.|.+.++.-+...+++++++.... ...+..+..+
T Consensus 161 vG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~ 240 (544)
T PF13000_consen 161 VGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSD 240 (544)
T ss_pred hHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCcccccccccc
Confidence 88888888877665544421 11 1222333444444444444444443322111 1101000000
Q ss_pred ---hhhh-hhhhHH-hhcC---CCC--CccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHh
Q 010350 309 ---MKKS-LSASLE-EMGE---SLK--DVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVS 378 (512)
Q Consensus 309 ---~~~~-~~~~~~-~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~ 378 (512)
++.. ..++.+ ...+ +.+ -....+++|-|.+..+.+..+..-.++..--.....-+.| .|++.++.+++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~ 319 (544)
T PF13000_consen 241 GKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLV 319 (544)
T ss_pred ccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHH
Confidence 0000 000000 0000 000 0123467788888888888888877777666666666766 599998876554
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHcCCCcc-------------c-----------hhHHHHHHHhHH-HHHH-HHH-hhcc
Q 010350 379 ILPPLASVLVTSIAAQFADNLIATGVETT-------------M-----------VRKICQTIAFLS-PAVC-MTL-SSID 431 (512)
Q Consensus 379 ~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-------------~-----------~~~~~~~~~~~~-~~~~-~~~-~~~~ 431 (512)
+.-++..++.|+++.|+.+.+.+.. . .+.++.....-+ .++. ... ...+
T Consensus 320 ----li~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP 395 (544)
T PF13000_consen 320 ----LIDFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFP 395 (544)
T ss_pred ----HHhhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCC
Confidence 3445566666666666654332110 0 111111111001 1111 111 1111
Q ss_pred -CC-CChHHHHHHH----HHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhccccc
Q 010350 432 -LG-LPHWEIVGIL----TAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDST 498 (512)
Q Consensus 432 -~~-~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~ 498 (512)
.+ .+.+.++..+ +..+.....+.....+-++..+|..=|+-+-+.|++.|+|+-.-..+.=+++|.+
T Consensus 396 ~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f 468 (544)
T PF13000_consen 396 SDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF 468 (544)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence 11 1122222222 2222222334445555667788999999999999999999988777766777764
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.6e-07 Score=83.69 Aligned_cols=336 Identities=13% Similarity=0.044 Sum_probs=203.0
Q ss_pred cccCCCchhhH-HHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccc
Q 010350 142 HRFGWNSSVAG-LVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVS 220 (512)
Q Consensus 142 ~~~g~s~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~ 220 (512)
.+.+++..+.. =+.-+..-.+.+.-++.=.+.|....|++++.-.+.......+. .+.++.+.+=+.-++.|...+.
T Consensus 34 p~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~l-v~g~sV~~mQvlE~FyG~~tAa- 111 (433)
T KOG3810|consen 34 PDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIML-VFGPSVKAMQVLEFFYGPATAA- 111 (433)
T ss_pred CCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHH-HhcCCchheeeehhhcChHHHH-
Confidence 44566665543 11112222344444555578898888998887655544444333 4566667777777777777543
Q ss_pred hhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccC--chHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 010350 221 PSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG--WESVFYIFGLLGIAWFSGFKILQEGETSNGA 298 (512)
Q Consensus 221 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (512)
..+-++++-...+++++.++.|...+..-.|-..|..++-.++..-. +...=++......+......++|.+++....
T Consensus 112 EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f 191 (433)
T KOG3810|consen 112 EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYF 191 (433)
T ss_pred HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhh
Confidence 35566777777788999999999999999999988888887775432 3333233333333444555666666532221
Q ss_pred CCCcchhhhhhhhhhhhhHHhhcCCC------------CCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 010350 299 TLAPRSNYINMKKSLSASLEEMGESL------------KDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE 366 (512)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~ 366 (512)
...+++.. ..+.++.+... -...+....+||.+..-.+.+.+..++++-...|.....++.
T Consensus 192 ~~~~~~~~-------v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~ 264 (433)
T KOG3810|consen 192 HRLEDKIS-------VGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEV 264 (433)
T ss_pred hcccccce-------eccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhh
Confidence 11111110 00001110000 011234567889998888999999999999999998888765
Q ss_pred cCCC-hhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCChHHHHHHHHH
Q 010350 367 LSLN-LTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTA 445 (512)
Q Consensus 367 ~g~s-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (512)
-.-+ ...-|..-++..+.++++.+..|++.-++.+. +...+.++...-+.++.+... +.+-++..++.++.
T Consensus 265 ~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~-------g~~ll~~~s~~~agllf~m~~-t~~Iw~~Ya~yvlf 336 (433)
T KOG3810|consen 265 APNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRW-------GDLLLAVGSAVQAGLLFIMAQ-TQHIWVCYAGYVLF 336 (433)
T ss_pred CCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchh-------hHHHHHHHHHHhhhhhhhhhc-ccceehhhhhHHHH
Confidence 2111 11224555666777778888888776554332 344444443333333333333 33445557777777
Q ss_pred HHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccc
Q 010350 446 GLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDS 497 (512)
Q Consensus 446 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~ 497 (512)
..............++...+.+..|..+|++..+.-+ +-+++.-.+.|.
T Consensus 337 r~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~---lQsilT~iVvd~ 385 (433)
T KOG3810|consen 337 RVIYQLTITIATFQIARNLSSELFGLVFGINTFVALI---LQSILTLIVVDD 385 (433)
T ss_pred HhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHH---HHHhheEEEEcc
Confidence 7777777777777778888999999999998776654 344444455553
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-07 Score=91.79 Aligned_cols=168 Identities=13% Similarity=0.113 Sum_probs=130.7
Q ss_pred Hhh-cHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC----CChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCc
Q 010350 332 IFR-SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELS----LNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET 406 (512)
Q Consensus 332 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g----~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~ 406 (512)
.++ .|.++.+...-+.-.+++|++...+-.|+...++ ++.+++.-++..+....-+...++||++||+-.
T Consensus 16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG----- 90 (498)
T COG3104 16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLG----- 90 (498)
T ss_pred cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 344 4677888888999999999999999999988888 999998777777777777788899999999854
Q ss_pred cchhHHHHHHHhHHHHHHHHHhhccC-CCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcc--hhHHHHHHHHhhhchh
Q 010350 407 TMVRKICQTIAFLSPAVCMTLSSIDL-GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPE--YASILLGITNTVGAVP 483 (512)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~lg 483 (512)
++..+..+.++.++..++..... .......+++.+.+++.|.+=+.......+..+++ +|-.++++.++..++|
T Consensus 91 ---~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiG 167 (498)
T COG3104 91 ---TRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIG 167 (498)
T ss_pred ---hhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehH
Confidence 34445566666666666665553 34556667777777888887777777777776653 3777889999999999
Q ss_pred hhhHHhhhhhcccccCcceEEEEec
Q 010350 484 GIVGVALTGYLLDSTHSWSVSYQCP 508 (512)
Q Consensus 484 ~~i~p~i~G~l~~~~g~~~~~f~~~ 508 (512)
+.++|.+.+++.+.+| |+..|.+.
T Consensus 168 sl~~p~i~~~~~~~~g-~~~gF~~a 191 (498)
T COG3104 168 SLIAPIITGLLAINYG-WHVGFGLA 191 (498)
T ss_pred HHHHHHHHHHHHHhhC-HHHHHHHH
Confidence 9999999999999998 87766544
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.7e-05 Score=78.31 Aligned_cols=363 Identities=16% Similarity=0.094 Sum_probs=206.7
Q ss_pred hhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCchHHHHHHHHHHHHHHHHHHhhhh---------
Q 010350 133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSLATALLPLLAGF--------- 202 (512)
Q Consensus 133 ~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~--------- 202 (512)
..+.+..+..+++.+...+.-..+.+.......++.+++++|- +||-+++.++.++..++..+..+.+.-
T Consensus 57 ~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~ 136 (571)
T KOG1237|consen 57 VSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCK 136 (571)
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Confidence 3566777888888888888888888988888999999999996 588888888888877775544332211
Q ss_pred ---------------HHHHHHHHHHHHhhcccchhhHHHHHHhhcC---ccc---hhhHHHHHHhhhhhHHHHHhhhhHH
Q 010350 203 ---------------MPGLVLSRVLVGIGEGVSPSAATDLIARSIP---LEE---RSRAVSFVFGGLSFGSVAGLLLAPP 261 (512)
Q Consensus 203 ---------------~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~---~~~---r~~~~~~~~~~~~~g~~~~~~~~~~ 261 (512)
...+....-+..+|.|+.-+...+.-+|-++ +++ +...+.++....++|..++-.+..+
T Consensus 137 ~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vy 216 (571)
T KOG1237|consen 137 FKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVY 216 (571)
T ss_pred CCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 1246667777888999999999999999998 222 2367788888889999999999989
Q ss_pred hccccCchHHHHHHHHHHHHHHHHHHhhcc----CCCCCCC------------------CCCc-ch------hhhhhh--
Q 010350 262 IIENLGWESVFYIFGLLGIAWFSGFKILQE----GETSNGA------------------TLAP-RS------NYINMK-- 310 (512)
Q Consensus 262 l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~----~~~~~~~------------------~~~~-~~------~~~~~~-- 310 (512)
+-++.||.+.|.+..+..++.+++++...+ +++.... ...+ .+ .....+
T Consensus 217 iq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~~~~~~~~~~~~~~t 296 (571)
T KOG1237|consen 217 IQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEELYYDCTDSVAIEGT 296 (571)
T ss_pred hhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcchhccccccccccccCC
Confidence 988999999999988776665544433211 1110000 0000 00 000000
Q ss_pred ------hh--hhhhHHh--h-cCC-C------CCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCh-
Q 010350 311 ------KS--LSASLEE--M-GES-L------KDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNL- 371 (512)
Q Consensus 311 ------~~--~~~~~~~--~-~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~- 371 (512)
+. ...+.+. . +.. + .-...|.++|.-.+|...+........+......-..-+.. +...
T Consensus 297 ~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr--~~~~~ 374 (571)
T KOG1237|consen 297 KPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDR--HLGSN 374 (571)
T ss_pred cccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCC--CCCCC
Confidence 00 0000000 0 000 0 01123445555555655554443333222222222222211 1111
Q ss_pred --hhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCC----ccchhHHHHHHHhHHHHHHHHHhhc---------------
Q 010350 372 --TEAAWVSILPPLASVLVTSIAAQFADNLIATGVE----TTMVRKICQTIAFLSPAVCMTLSSI--------------- 430 (512)
Q Consensus 372 --~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 430 (512)
..++.+.....+...+..++.-++...+-++-.. .....+ +.++..+..+++.....
T Consensus 375 f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqr--ig~G~~~si~sm~~aa~vE~krl~~~~~~~~~ 452 (571)
T KOG1237|consen 375 FKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQR--IGIGLVLSILSMAVAGIVEAKRLKTAVSLLVE 452 (571)
T ss_pred eEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhhe--eeccchHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence 1112222222223333333332322222221110 111111 12222222222222111
Q ss_pred -cCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccC
Q 010350 431 -DLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTH 499 (512)
Q Consensus 431 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g 499 (512)
..-+..|.+--++++|++-........-+.....|++.|+.++++......+|..++..+...+....+
T Consensus 453 ~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~ 522 (571)
T KOG1237|consen 453 TNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTG 522 (571)
T ss_pred CCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 011224555567788888888888888888888999999999999999999999999999877776653
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.4e-06 Score=68.83 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=95.8
Q ss_pred CchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHH
Q 010350 147 NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATD 226 (512)
Q Consensus 147 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 226 (512)
+...--.-.++.+....+.+++.+.+.+++|.|+.++++.+.+.+-.+.. .-++.+.++.+-.+.|++.+..++....
T Consensus 35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~--~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 35 SAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF--FYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred cccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 33333345667777788889999999999999999999999887555433 3455688999999999999999999999
Q ss_pred HHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcc
Q 010350 227 LIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE 264 (512)
Q Consensus 227 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 264 (512)
++.+..+++++++..+++......+.++|.++.-++.+
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998888887765543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.1e-07 Score=77.46 Aligned_cols=119 Identities=13% Similarity=0.181 Sum_probs=84.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhh
Q 010350 378 SILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGL 457 (512)
Q Consensus 378 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 457 (512)
.+...++..++.++.+++.||+++| +. .........++....... .+.....+..++.+++.+...+...
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~--------~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~ 73 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRK--------PV-LLVGLFIFVLSTAMFALS-SNITVLIIARFLQGFGAAFALVAGA 73 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchh--------HH-HHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4456678889999999999999864 22 233333333333322222 2333445556677777776677777
Q ss_pred hhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEEe
Q 010350 458 YCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQC 507 (512)
Q Consensus 458 ~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~~ 507 (512)
....+..++++|+++.++.++...+|..++|.+.|.+.+..+ |+..|.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~ 122 (141)
T TIGR00880 74 ALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLF 122 (141)
T ss_pred HHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHH
Confidence 777888899999999999999999999999999999998776 6555443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.4e-06 Score=83.98 Aligned_cols=149 Identities=15% Similarity=0.097 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhH----HHHcCCCccchhHH
Q 010350 337 AVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADN----LIATGVETTMVRKI 412 (512)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~~~~~~~~~~~~~~ 412 (512)
++..+....+...+++.....+++.|++ .+|.+....+.+.....+.+++..++.|+++|| +||| +.
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl~-~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR--------rp 75 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR--------RP 75 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh--------HH
Confidence 3444555555666777777888898885 579999999999999999999999999999995 7764 33
Q ss_pred HHHHHhHHHHHHHHHhhccCC------------CC----hHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchh--HHHHH
Q 010350 413 CQTIAFLSPAVCMTLSSIDLG------------LP----HWEIVGILTAGLALSSFALSGLYCTHQDISPEYA--SILLG 474 (512)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~------------~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--g~~~g 474 (512)
.+..+.+...+++.+...... .. ...++++.+..++......+......+..|+++| +.+.+
T Consensus 76 ~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~ 155 (477)
T TIGR01301 76 FIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANA 155 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHH
Confidence 333333333344333322111 00 1122333344445555666666777787887754 67999
Q ss_pred HHHhhhchhhhhHHhhhhhc
Q 010350 475 ITNTVGAVPGIVGVALTGYL 494 (512)
Q Consensus 475 ~~~~~~~lg~~i~p~i~G~l 494 (512)
+.+...++|+.+|+.++|+.
T Consensus 156 ~~~~~~~lG~ilg~~~g~~~ 175 (477)
T TIGR01301 156 YFSFFMAIGNVLGYAAGAYS 175 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.001 Score=67.03 Aligned_cols=278 Identities=12% Similarity=0.018 Sum_probs=157.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHH-HHHHhhhhhhhhhhhcCCchHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGGRKVLQTGVLIW 189 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 189 (512)
.++-++.+.+.+|+..+..+..-..=.. +.... .++.+.++-....+ ...+...+..+++++++|.+++-+....+
T Consensus 22 E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~--gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F 99 (491)
T PF03219_consen 22 ELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQ--GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPF 99 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445555556665555554444333222 11122 56666777664444 44566788999999999999988776666
Q ss_pred HHHHHHHHHhh-hh-----------------------------HHHHHHHHHHHHhhcccchh-hHHHHHHhhcCccchh
Q 010350 190 SLATALLPLLA-GF-----------------------------MPGLVLSRVLVGIGEGVSPS-AATDLIARSIPLEERS 238 (512)
Q Consensus 190 ~~~~~~~~~~~-~~-----------------------------~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~r~ 238 (512)
.....++++.- ++ .|...+..+..-+-.+...+ ..+.+..|.++.+|-.
T Consensus 100 ~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAK 179 (491)
T PF03219_consen 100 LGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAK 179 (491)
T ss_pred HHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 55555544321 00 02222333333444444444 5688999999999999
Q ss_pred hHHHHHHhhhhhHHHHHhhhhHHhcc---------ccCchHHHHHHH----HHHHHHHHHHHhhccCCCCCCCCCCcchh
Q 010350 239 RAVSFVFGGLSFGSVAGLLLAPPIIE---------NLGWESVFYIFG----LLGIAWFSGFKILQEGETSNGATLAPRSN 305 (512)
Q Consensus 239 ~~~~~~~~~~~~g~~~~~~~~~~l~~---------~~gw~~~f~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (512)
+..+++..+.++|.++++.+..++.+ ...|...+.... +.+++.+....++.+....++... +..+
T Consensus 180 RfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~-~~~~ 258 (491)
T PF03219_consen 180 RFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFY-PSAK 258 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccc-hhhh
Confidence 99999999999999999999888887 123553332222 112222222333322211111110 0000
Q ss_pred hhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhh---HHHhhhhH
Q 010350 306 YINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEA---AWVSILPP 382 (512)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~---g~~~~~~~ 382 (512)
.. +++ .++..-...++.++|+|-+..+++...+++.....+....-..+++.+.-+.... |-.....+
T Consensus 259 ~~-kk~--------k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tG 329 (491)
T PF03219_consen 259 KK-KKK--------KPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTG 329 (491)
T ss_pred cc-ccc--------CCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 00 000 0000011245778889999888888888777777666655555655433222212 34455566
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 010350 383 LASVLVTSIAAQFADNLIA 401 (512)
Q Consensus 383 ~~~~~~~~~~g~l~dr~~~ 401 (512)
+..++..++.+.+.+|+|-
T Consensus 330 ivtii~~~l~~~iir~~GW 348 (491)
T PF03219_consen 330 IVTIIMMFLSSNIIRRFGW 348 (491)
T ss_pred HHHHHHHHHHHHHHHHhhH
Confidence 6777777778888888764
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=5e-07 Score=90.92 Aligned_cols=165 Identities=16% Similarity=0.210 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcc-cCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh----cCCchHHHHHHHHH
Q 010350 115 LIGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRKVLQTGVLIW 189 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~g~r~~~~~~~~~~ 189 (512)
.++..++++++.....+.+..++|.+.++ .|+|..+.+.+...+.++.+++.+++|+++|| ..+|........++
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34566777778888889899999997777 66999999999999999999999999999999 66777777666665
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccch-hhHHHHHHhhhhhHHHHH-hhhhHHhccccC
Q 010350 190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEER-SRAVSFVFGGLSFGSVAG-LLLAPPIIENLG 267 (512)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~-~~~~~~l~~~~g 267 (512)
.+...+......+.......-+....+.....+......++...++.| -...+....+.+.+++++ ++..+.....++
T Consensus 354 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~ 433 (495)
T KOG2533|consen 354 AIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYG 433 (495)
T ss_pred HHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchh
Confidence 554422222233223333333444444555556666667766654433 333344444444444444 444445555678
Q ss_pred chHHHHHHHHHH
Q 010350 268 WESVFYIFGLLG 279 (512)
Q Consensus 268 w~~~f~~~~~~~ 279 (512)
|.+.|+.....+
T Consensus 434 ~~~~f~~~~~~~ 445 (495)
T KOG2533|consen 434 WGAVFYMLVAAC 445 (495)
T ss_pred hhhHHHHHHHHH
Confidence 998886555443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.8e-06 Score=63.08 Aligned_cols=71 Identities=21% Similarity=0.159 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHH
Q 010350 119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW 189 (512)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 189 (512)
+-..+++.+.....+.|++|.+.++.|+|..++|.+.++..+...++++++|.++||+++++..+....++
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 34556667778888999999999999999999999999999999999999999999999999887765543
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.8e-06 Score=63.46 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=68.1
Q ss_pred HHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhh
Q 010350 126 CNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG 201 (512)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 201 (512)
.++++..+++.+|.+++|.++|.++.+++.+..++||.+|.+...++.++..+++.+..+.+...+..+.++...+
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999999988899999998888887777754433
|
Note that many members are hypothetical proteins. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0048 Score=60.79 Aligned_cols=276 Identities=11% Similarity=-0.015 Sum_probs=154.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccC---CCchhhHHHHHHHHH-HHHHhhhhhhhhhhhcCCchHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFG---WNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGGRKVLQTGVL 187 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~ 187 (512)
.++-++.+.+.+++..+..+.+ -.+.+.+. ..++.+.++-+.+.+ ...+..++.+++.+++.+.+++-+.+.
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~l----R~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~ 100 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNLL----RSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILG 100 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 4444555555554444443333 23444443 356677888888877 667889999999999999999988777
Q ss_pred HHHHHHHHHHHhhh--------------h-----H------------HHHHHHHHHHHhhcccchh-hHHHHHHhhcCcc
Q 010350 188 IWSLATALLPLLAG--------------F-----M------------PGLVLSRVLVGIGEGVSPS-AATDLIARSIPLE 235 (512)
Q Consensus 188 ~~~~~~~~~~~~~~--------------~-----~------------~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~ 235 (512)
.+....+++++.-- + . |..-+...+.-+-.+.... ..+....|....+
T Consensus 101 ~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~ 180 (509)
T COG3202 101 FFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIE 180 (509)
T ss_pred HHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 76666666554311 0 0 2222233333333333433 5667788889889
Q ss_pred chhhHHHHHHhhhhhHHHHHhhhhHHhccccC----------chHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchh
Q 010350 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG----------WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSN 305 (512)
Q Consensus 236 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g----------w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (512)
|-.+.+++++.+.+++..+++.+..++.++.. .+..+.+.++.+++++.+..++.+.-..++....+..+
T Consensus 181 eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~ 260 (509)
T COG3202 181 EAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKK 260 (509)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhc
Confidence 99999999999999999999999988886321 33344444444455555554443322111110000000
Q ss_pred hhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhh---HHHhhhhH
Q 010350 306 YINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEA---AWVSILPP 382 (512)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~---g~~~~~~~ 382 (512)
.. +++. .+-.-..+++.+.++|-++.+.+...+++.+...+-...-.-.++.+-.+.... |.+....+
T Consensus 261 kk-~~~k--------~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tg 331 (509)
T COG3202 261 KK-KKKK--------LKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTG 331 (509)
T ss_pred cc-cccc--------ccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHH
Confidence 00 0000 000001235677888888888887777776666554433333333333322222 22333444
Q ss_pred HH-HHHHHHHHHHHHhHHH
Q 010350 383 LA-SVLVTSIAAQFADNLI 400 (512)
Q Consensus 383 ~~-~~~~~~~~g~l~dr~~ 400 (512)
+. .++...+++.+..|.|
T Consensus 332 vv~~v~~~~~~s~~ir~~G 350 (509)
T COG3202 332 VVSLVVFLFPGSNLIRRVG 350 (509)
T ss_pred HHHHHHHHhhhHHHHHHhh
Confidence 44 3444556667776655
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.2e-06 Score=83.90 Aligned_cols=135 Identities=10% Similarity=-0.027 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHh
Q 010350 349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLS 428 (512)
Q Consensus 349 ~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (512)
....|.+..+.|. +++.+|++..+.+.+....... ....++.|++.||+|+| ....++.++..++.++.
T Consensus 40 ~g~~y~fsv~s~~-L~~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr~G~R---------~vllig~ll~~iG~ll~ 108 (591)
T PTZ00207 40 TSFMYAFNLISGA-MQARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYDYLGPR---------PIFVLSMTVFCLGTLLF 108 (591)
T ss_pred HHHHHHHHHHHHH-HHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHH
Confidence 3344556666665 4567899999999887764333 35666789999999864 34444444444444443
Q ss_pred hccC-----CCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHh-hhhhcc
Q 010350 429 SIDL-----GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVA-LTGYLL 495 (512)
Q Consensus 429 ~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~-i~G~l~ 495 (512)
.+.. .+...+.+..++.|++.+...+.......+.+ |++||.+.|+..+..++|+++.+. ..+++.
T Consensus 109 ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~F-p~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~ 180 (591)
T PTZ00207 109 ALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVF-PSNRGAVVAIMKTFTGLGSAILGSIQLAFFS 180 (591)
T ss_pred HHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3321 22233344556667776666666666666655 588999999999999999986444 444443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.27 E-value=2e-06 Score=90.56 Aligned_cols=132 Identities=15% Similarity=0.157 Sum_probs=98.1
Q ss_pred HHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccC----
Q 010350 357 SWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDL---- 432 (512)
Q Consensus 357 ~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 432 (512)
..+|. +++.++++..+.|++.+...++.+++.++.+++.||.++++. +.++.++.++..++..++.
T Consensus 54 ~~l~~-iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~---------i~~g~ll~~lg~ll~alphf~~~ 123 (633)
T TIGR00805 54 SSLTT-IERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIV---------IGIGCAIMGLGSFLLSLPHFLSG 123 (633)
T ss_pred hhchh-hhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceE---------EEecHHHHHHHHHHHhChHHhcC
Confidence 33443 445689999999999999999999999999999999886532 2222222222222222110
Q ss_pred ---------------------------------------------C-CChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCc
Q 010350 433 ---------------------------------------------G-LPHWEIVGILTAGLALSSFALSGLYCTHQDISP 466 (512)
Q Consensus 433 ---------------------------------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 466 (512)
. ....++++-++.|++.+...+....++.+.+++
T Consensus 124 ~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~ 203 (633)
T TIGR00805 124 RYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKS 203 (633)
T ss_pred CccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCc
Confidence 0 012334567888888888888888888888999
Q ss_pred chhHHHHHHHHhhhchhhhhHHhhhhhccccc
Q 010350 467 EYASILLGITNTVGAVPGIVGVALTGYLLDST 498 (512)
Q Consensus 467 ~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~ 498 (512)
++|+...|+.++...+|..+|+.++|++.+.+
T Consensus 204 ~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~ 235 (633)
T TIGR00805 204 KNSPLYIGILESIAVFGPAFGYLLGSFCLQIY 235 (633)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999999998764
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.6e-05 Score=79.88 Aligned_cols=181 Identities=15% Similarity=0.135 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhh-hcccCCCc---hhhHHHHHHHHHHHHHhhhhhhhhhhhcCCc-hHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPM-SHRFGWNS---SVAGLVQSSFFWGYALSQLPGGWLAKIFGGR-KVLQTGVLI 188 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~---~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r-~~~~~~~~~ 188 (512)
|.+....+..++.++.......+.|.. ..-++-+. ...++....+.++..++.++.|.+..+++|- +.++++.++
T Consensus 310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~ 389 (599)
T PF06609_consen 310 RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVL 389 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHH
Confidence 445555555555555555555666663 33455443 3578888888888889999999999998884 444577666
Q ss_pred HHHHHHHHHHh-hhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcc---
Q 010350 189 WSLATALLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE--- 264 (512)
Q Consensus 189 ~~~~~~~~~~~-~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--- 264 (512)
+.++..+++.. .+|....+..-++.|++.+...........-..|++..+.+.|+..+.-.+|+.+|..+...+..
T Consensus 390 ~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~ 469 (599)
T PF06609_consen 390 MTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKL 469 (599)
T ss_pred HHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence 66544444322 34445667888899999998887777777677788899999999888888877777665533321
Q ss_pred -----------------------------------------------------------ccCchHHHHHHHHHHHHHHHH
Q 010350 265 -----------------------------------------------------------NLGWESVFYIFGLLGIAWFSG 285 (512)
Q Consensus 265 -----------------------------------------------------------~~gw~~~f~~~~~~~~~~~~~ 285 (512)
..++|++|+....++.+.++.
T Consensus 470 ~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiia 549 (599)
T PF06609_consen 470 PKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIA 549 (599)
T ss_pred hHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 015789999988888888888
Q ss_pred HHhhccCCC
Q 010350 286 FKILQEGET 294 (512)
Q Consensus 286 ~~~~~~~~~ 294 (512)
.+++++.++
T Consensus 550 a~fl~d~~~ 558 (599)
T PF06609_consen 550 ALFLGDIDK 558 (599)
T ss_pred HHHcCChHH
Confidence 888876554
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.5e-05 Score=71.42 Aligned_cols=132 Identities=21% Similarity=0.142 Sum_probs=107.8
Q ss_pred hhhhhhhh-hcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcC--CchHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 010350 133 LSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG--GRKVLQTGVLIWSLATALLPLLAGFMPGLVLS 209 (512)
Q Consensus 133 ~~~~~~~~-~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (512)
+....+.+ .+.+|+++.|.|-+.+...+.+.+.+....+..||.. -+-.+..++.++.-..++.. .......+.++
T Consensus 280 ~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls-~~~~~~~l~~~ 358 (451)
T KOG2615|consen 280 LENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLS-LARTPVVLYLG 358 (451)
T ss_pred HHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHh-ccccchhhhHH
Confidence 33333333 4779999999999999999999999999999999987 66666666666555555554 33444778888
Q ss_pred HHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccc
Q 010350 210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN 265 (512)
Q Consensus 210 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 265 (512)
..+..+..+...+....++....|.++||..+|+..+...++-++||+++|.+..+
T Consensus 359 s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 359 STLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 88999998988899999999999999999999999999999999999999987753
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=3e-05 Score=80.44 Aligned_cols=157 Identities=17% Similarity=0.080 Sum_probs=106.6
Q ss_pred hhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHH
Q 010350 137 IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP--GLVLSRVLVG 214 (512)
Q Consensus 137 ~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r~l~G 214 (512)
++.....+|.+......+... .........+.+.|++|||.....+.++..++.++.++...... ...+...+..
T Consensus 341 l~~~~~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (521)
T KOG0255|consen 341 LSLNVSGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGK 417 (521)
T ss_pred hhhhhhhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 333444455544333333222 44444555589999999999999999998888888766554433 3556666666
Q ss_pred hhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHH-HHHHHhhccCC
Q 010350 215 IGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW-FSGFKILQEGE 293 (512)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~-~~~~~~~~~~~ 293 (512)
++.+..+.....+.+|.+|...|..+.+.......+|.+++|.+...... ......+.+.+....+. ++...++||+.
T Consensus 418 ~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~ 496 (521)
T KOG0255|consen 418 FFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETK 496 (521)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccC
Confidence 66667777778899999999999999999999999999999999876654 22222222334444444 34447788876
Q ss_pred CCCC
Q 010350 294 TSNG 297 (512)
Q Consensus 294 ~~~~ 297 (512)
....
T Consensus 497 ~~~l 500 (521)
T KOG0255|consen 497 GKPL 500 (521)
T ss_pred CCCC
Confidence 5544
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00043 Score=66.79 Aligned_cols=358 Identities=15% Similarity=0.032 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhh---HHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHH
Q 010350 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVA---GLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 192 (512)
.+..++..+-..+..+.+....+.+.+++-.+..+. ........+...+....-..+.-|..+|..+........+.
T Consensus 20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~i 99 (406)
T KOG1479|consen 20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILFI 99 (406)
T ss_pred HHHHHHHhcccccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444667777777777766664333311 22222333333444455555555532222222221111111
Q ss_pred HHHHHHh-------hhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhh---hhHHh
Q 010350 193 TALLPLL-------AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLL---LAPPI 262 (512)
Q Consensus 193 ~~~~~~~-------~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~---~~~~l 262 (512)
..+.... ...+...++.-.+.+++.+..........++ +|++.-...++ +.++++++..+ +.-..
T Consensus 100 ~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~----G~a~aG~l~Sl~~i~tka~ 174 (406)
T KOG1479|consen 100 VTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMS----GQALAGTLTSLLRILTKAA 174 (406)
T ss_pred HHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHh----cchhHhHHHHHHHHHHHHh
Confidence 1111111 1224566777788888888888777777665 55444333332 33333333222 22222
Q ss_pred ccc--cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHH
Q 010350 263 IEN--LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWA 340 (512)
Q Consensus 263 ~~~--~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (512)
.+. .+--..|.+..++.++|++....+++.+-.+...+++.+...+ .+....+.+.. -+..+.+.++++|+-.-.
T Consensus 175 ~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf~~yy~~~~~~~~~~-l~~~~~~~~~~-~~~~~~~~~~i~~k~~~~- 251 (406)
T KOG1479|consen 175 FSDSRTSALIYFITSTVILLLCFVLYLVLPKLPFVRYYREKAGSIGSK-LAAEGIESDSS-LSNEDDSLWDIFKKIKDL- 251 (406)
T ss_pred cCCCCceeehhHHHHHHHHHHHHHHHHHhhcchHHHHHhhhccccccc-ccccccccccc-cccccchHHHHHHHHHHH-
Confidence 222 2233344444444555666555444433211110000000000 00000000000 000011334444332211
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcCC---ChhhhHHHhhh-hHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHH
Q 010350 341 MIYAHFCGSWGHYTCLSWLPTYFSEELSL---NLTEAAWVSIL-PPLASVLVTSIAAQFADNLIATGVETTMVRKICQTI 416 (512)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~---s~~~~g~~~~~-~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 416 (512)
.+.....+......+|-+..+..+- +....-+.... .++...+|.+.+.++-.+- + |+.....
T Consensus 252 ----~~~i~lvy~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~--------r~l~i~v 318 (406)
T KOG1479|consen 252 ----AFNIFLVYFVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPD-P--------RKLTIPV 318 (406)
T ss_pred ----hhchheeeeeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCC-C--------ceehHHH
Confidence 1122222333445677777654322 22233334444 6777777766655544331 1 1111111
Q ss_pred HhHHHHHHHHH------hhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhh
Q 010350 417 AFLSPAVCMTL------SSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVAL 490 (512)
Q Consensus 417 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i 490 (512)
..=...+-+.. ......+..+.+....++|+..|-.....+..+.+.++++++-.+-.+ ..+.-.+++....+
T Consensus 319 ~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~-m~~fl~~Gl~~G~~ 397 (406)
T KOG1479|consen 319 LLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNL-MVFFLVGGLALGSL 397 (406)
T ss_pred HHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHH-HHHHHHHHHHHhhH
Confidence 11111111111 112244567777777888888777777777777777776665554444 44444444444444
Q ss_pred hhhcc
Q 010350 491 TGYLL 495 (512)
Q Consensus 491 ~G~l~ 495 (512)
.+++.
T Consensus 398 ~s~l~ 402 (406)
T KOG1479|consen 398 LSWVF 402 (406)
T ss_pred HHHHH
Confidence 44543
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.6e-05 Score=74.15 Aligned_cols=109 Identities=22% Similarity=0.288 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhh--hh------HHHHHHHHHHHHhhcccchhhHHHHHHhhcCcc---chhhHHHHHHhhh
Q 010350 180 KVLQTGVLIWSLATALLPLLA--GF------MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE---ERSRAVSFVFGGL 248 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~ 248 (512)
++++++.+++.+|.+++...+ .. ...++++.++.++|.|+.-|...++.+|.++++ +|.....++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 456777788888887743332 22 146888999999999999999999999999765 4667788899999
Q ss_pred hhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHh
Q 010350 249 SFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI 288 (512)
Q Consensus 249 ~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 288 (512)
++|..+++.+.+++.++.||.+.|.+.++..++.++.+..
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988877766655444
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0009 Score=66.96 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=44.5
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhh
Q 010350 433 GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVAL 490 (512)
Q Consensus 433 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i 490 (512)
.+..+.++..+++|+..|......+....+.+++++|-.+-.+...+-.+|-.+|..+
T Consensus 370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667778888888887777777777777888888888888777777777777765
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.9e-05 Score=54.17 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=54.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHc
Q 010350 341 MIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT 402 (512)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~ 402 (512)
+-...++...+...+..|+|.|+++ .|+++.+.|.+.++..+..+++.++.|+++||.+++
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~ 65 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKR 65 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 4455677778888999999999986 699999999999999999999999999999999875
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0007 Score=65.96 Aligned_cols=112 Identities=17% Similarity=0.092 Sum_probs=77.7
Q ss_pred CchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHH--HHHHHHHH--HhhhhHHHHHHHHHHHHhhcccchh
Q 010350 147 NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW--SLATALLP--LLAGFMPGLVLSRVLVGIGEGVSPS 222 (512)
Q Consensus 147 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~r~l~G~~~~~~~~ 222 (512)
...+.-+...+|.+|-.++.--...+ |+ |++.+.+.+-. .+..++.+ .+.++.+.+++..+..|+..|..+.
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 35666777777777766554322111 33 44444332221 11111111 1235567888889999999999999
Q ss_pred hHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHh
Q 010350 223 AATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI 262 (512)
Q Consensus 223 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 262 (512)
.....+.+..++++|..++|....+-++|..++.+++-.+
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998887654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0011 Score=66.46 Aligned_cols=126 Identities=21% Similarity=0.228 Sum_probs=104.8
Q ss_pred hhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhh-hhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 010350 137 IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGG-WLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGI 215 (512)
Q Consensus 137 ~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g-~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~ 215 (512)
.-.+...++++..+.+.+.+.......+++++.. .+...+|-|++...|+....+.....+ +++..|+.+....+.++
T Consensus 265 ~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~a-f~~~~w~~~~~~v~~~~ 343 (463)
T KOG2816|consen 265 LLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFA-FATETWMMFAAGVVVAL 343 (463)
T ss_pred EEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHH-HhccchhhhHHHHHHHh
Confidence 3346778999999999998888888888888877 667778999988899888888887775 45555777777777766
Q ss_pred hcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcc
Q 010350 216 GEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE 264 (512)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 264 (512)
. ....+..-+.++.+.+++++|+++++......+.++++|.+-+.+..
T Consensus 344 ~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 344 A-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred h-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 5 56668889999999999999999999999999999999999887654
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0035 Score=56.61 Aligned_cols=99 Identities=16% Similarity=0.163 Sum_probs=52.8
Q ss_pred cchhhHHHHHHhhhhhHHHHHhhhhHHh---cc--ccCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhh
Q 010350 235 EERSRAVSFVFGGLSFGSVAGLLLAPPI---IE--NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINM 309 (512)
Q Consensus 235 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l---~~--~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (512)
++|+....+...+.++|.++.-...-.- .+ .-.|++++.+.+++.++-+++..++-.+-+....+ +++++.
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~-~k~~k~--- 77 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPK-EKQEKE--- 77 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc-cccccc---
Confidence 4566666666667777777654432211 11 23599999998888776666655553221111111 001000
Q ss_pred hhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHH
Q 010350 310 KKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFC 347 (512)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (512)
.....++...++.+|++..|...+....
T Consensus 78 ----------~~~~~~~~s~~~~LK~K~tw~w~~~Yg~ 105 (267)
T PF07672_consen 78 ----------NSTLSKKPSYKSILKEKETWKWILIYGI 105 (267)
T ss_pred ----------cccccccchHHHHHccchHHHHHHHHHH
Confidence 0011123456889999998877655443
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0014 Score=60.22 Aligned_cols=134 Identities=18% Similarity=0.129 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhh
Q 010350 152 GLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARS 231 (512)
Q Consensus 152 ~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~ 231 (512)
|.+.-.-.+...+..+.+....||+.--.-..+..++.+.+..+. .++++.++-+.+-.+..++.|.......++-+ .
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lV-afs~s~~~sL~GV~~aSissGlGEiTFL~lss-~ 142 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLV-AFSNSVPMSLLGVVFASISSGLGEITFLALSS-R 142 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEE-EeccchhHHHhhhhhhhhcCCcceeehhhhhc-c
Confidence 334444455566667777788888544333333334545566555 36777788888888888888877666555433 3
Q ss_pred cCccchhhHHHHHHhhhhhHHHHHhhhhHHhcc--ccCchHHHHHHHHHHHHHHHHHHhhcc
Q 010350 232 IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE--NLGWESVFYIFGLLGIAWFSGFKILQE 291 (512)
Q Consensus 232 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~gw~~~f~~~~~~~~~~~~~~~~~~~ 291 (512)
++ ....+.+.++.+.++.+|..--.++.+ .+.-|...++...+.++.+...+++-+
T Consensus 143 Y~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~ 200 (409)
T KOG3880|consen 143 YP----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLK 200 (409)
T ss_pred CC----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeC
Confidence 33 234566777777777777766666665 356788888877776666555554433
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.012 Score=60.45 Aligned_cols=156 Identities=15% Similarity=0.134 Sum_probs=91.2
Q ss_pred HHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHH-HHHHHH-HHHHHHHHhh-
Q 010350 125 ICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT-GVLIWS-LATALLPLLA- 200 (512)
Q Consensus 125 ~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~-~~~~~~~~~~- 200 (512)
+.+.....+-..... +.--+|-+..+.+.+.+++.++..+|..+++++.++.-++...+- ...+.+ ++..+.....
T Consensus 25 ~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~ 104 (521)
T PRK03612 25 VCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFA 104 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444344333333 344568889999999999999999999998887644322222111 111111 1111111111
Q ss_pred ---hhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcc-ccCchHHHHHHH
Q 010350 201 ---GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-NLGWESVFYIFG 276 (512)
Q Consensus 201 ---~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~gw~~~f~~~~ 276 (512)
.....++...++.++..|...|....+..+... ++-+...|..+....+|+++|+++.+++.- .+|-....++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a 183 (521)
T PRK03612 105 FQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTG 183 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 111123344556677777777776666554322 345678889999999999999999887654 677555555555
Q ss_pred HHHHH
Q 010350 277 LLGIA 281 (512)
Q Consensus 277 ~~~~~ 281 (512)
.+.++
T Consensus 184 ~l~~~ 188 (521)
T PRK03612 184 SLNLL 188 (521)
T ss_pred HHHHH
Confidence 54433
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0011 Score=69.74 Aligned_cols=140 Identities=13% Similarity=0.042 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhc
Q 010350 351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI 430 (512)
Q Consensus 351 ~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (512)
++|++...+..|+.+.+|++...+..++.......-+...++|+++|++-.+ +..+.++.++..+...+..+
T Consensus 2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~--------~~tIl~~~ii~~lG~~llai 73 (654)
T TIGR00926 2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGK--------FKTILYLSIVYVVGHALLSF 73 (654)
T ss_pred ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHh
Confidence 4567778888888888999999888888887777788888999999987653 23333333333333333322
Q ss_pred cCCC-------ChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcc---hhHHHHHHHHhhhchhhhhHHhhhhhccccc
Q 010350 431 DLGL-------PHWEIVGILTAGLALSSFALSGLYCTHQDISPE---YASILLGITNTVGAVPGIVGVALTGYLLDST 498 (512)
Q Consensus 431 ~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~ 498 (512)
.... ....++++.+..++.+.+-+.......+..+++ .+-..+.+.+...++|+.+++.+.+++.+..
T Consensus 74 ~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~ 151 (654)
T TIGR00926 74 GAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDV 151 (654)
T ss_pred ccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2110 112344555566666666666666666656543 4677888899999999999999999987543
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.092 Score=49.10 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=52.8
Q ss_pred HHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhc
Q 010350 159 FWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI 232 (512)
Q Consensus 159 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~ 232 (512)
++..+..+++.+.+..++|-|+++.++...+...... -.-+.+..++-.-...|++.+..+...-++++++-
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~--Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAA--NLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--hcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 3445566667779999999999999887766443322 12234567888889999999999988888877655
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00093 Score=64.88 Aligned_cols=179 Identities=12% Similarity=-0.021 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCC-chHHHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG-RKVLQTGVLIWSLA 192 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~ 192 (512)
+.++++.+++.......+.+...+......-|.+....|+...+..++.+++.++.|.+.||.+. |.+.++......++
T Consensus 266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 266 RQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG 345 (480)
T ss_pred ccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 33444444444444444455555554555667787889999999999999999999999999876 44444443433333
Q ss_pred HHHHHHhh---hhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccC--
Q 010350 193 TALLPLLA---GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-- 267 (512)
Q Consensus 193 ~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-- 267 (512)
.......+ ...+.++..-.+.|++.....|...-+-.|..-|..-+...|+.+....+-.++-..+-+...+..+
T Consensus 346 ~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~ 425 (480)
T KOG2563|consen 346 TLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPP 425 (480)
T ss_pred HHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCC
Confidence 22221111 2224566777888999999999888888877655666777888888877777777778787777665
Q ss_pred --chHHHHHHHHHHHHHHHHHHhhccC
Q 010350 268 --WESVFYIFGLLGIAWFSGFKILQEG 292 (512)
Q Consensus 268 --w~~~f~~~~~~~~~~~~~~~~~~~~ 292 (512)
|...-+.....+++.+++..++.++
T Consensus 426 ~~~~~~~i~~~~~~~l~~~lva~~r~~ 452 (480)
T KOG2563|consen 426 GNTFPANIFLTVSALLGAILVAFFRPD 452 (480)
T ss_pred CCCccchhHhHHHHHHHHHHHhhhhhh
Confidence 4433344444444444444444443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.01 Score=54.34 Aligned_cols=138 Identities=15% Similarity=0.148 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHH
Q 010350 348 GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTL 427 (512)
Q Consensus 348 ~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (512)
.....|.+..|-|.. ++.+|+|..+...+.....++..+ +++.|.+.|+++.+ ....++.....+....
T Consensus 14 ~~Gt~Y~Fs~yS~~L-k~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~---------~~l~iG~~~~~~GY~~ 82 (250)
T PF06813_consen 14 CSGTTYTFSAYSPQL-KSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPW---------VVLLIGAVLGFVGYGL 82 (250)
T ss_pred hcCcccchhhhhHHH-HHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchH---------HHHHHHHHHHHHHHHH
Confidence 334556666666654 467899999999998888888876 48889999999853 3344444444444433
Q ss_pred hhcc-----CCCChHHHHHHHHHH-HHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccc
Q 010350 428 SSID-----LGLPHWEIVGILTAG-LALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDS 497 (512)
Q Consensus 428 ~~~~-----~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~ 497 (512)
.... ...+.|.+..+..++ .+.............+++| ++||++.|+.-...++++++-..+...+.+.
T Consensus 83 ~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 83 LWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 2221 113445544433333 2223333444445556665 6899999999999999988877776666543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0098 Score=59.87 Aligned_cols=146 Identities=19% Similarity=0.180 Sum_probs=91.1
Q ss_pred HHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHh-hccC--CC
Q 010350 358 WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLS-SIDL--GL 434 (512)
Q Consensus 358 ~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~ 434 (512)
-...|+++.+|+++.+...+.....+. ....++.|.++|-+--.+.+ ||..++++.++..+..... .... ..
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~r----r~~Y~~i~~~~~~~~~~~~~~~~~~~~s 85 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYR----RKPYMIIGWLLGAVSALVLALLPASESS 85 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCc----chHHHHHHHHHHHHHHHHHHhcccccch
Confidence 344577788999999988776666554 34578889999987432221 5555566655553333322 2221 12
Q ss_pred ChHHHHHHHHHHHHHHHhhhhhhhhHhhhc--CcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEEecC
Q 010350 435 PHWEIVGILTAGLALSSFALSGLYCTHQDI--SPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCPP 509 (512)
Q Consensus 435 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~~~~ 509 (512)
.....+.+++..++....-...-....+.. .|+.+|...+....+..+|++++..+.|.+.+..+ ++..|.+.+
T Consensus 86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~ 161 (433)
T PF03092_consen 86 AAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISA 161 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHH
Confidence 222333334444444444443333333332 23338888999999999999999999999999876 788876654
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.092 Score=50.14 Aligned_cols=124 Identities=18% Similarity=0.182 Sum_probs=79.4
Q ss_pred HhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCChHHHHHHHH
Q 010350 365 EELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILT 444 (512)
Q Consensus 365 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (512)
+.+|++..+++.++......+.+.+.+.|.+.||+||| +.++..+.+-...|+.- . .++-..++++-++
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk--------~~cl~~cily~~scl~k-~--~~~~~~L~~GRvl 130 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK--------KACLLFCILYSLSCLTK-H--SSNYPVLLLGRVL 130 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch--------HHHHHHHHHHHHHHHHH-h--ccccHHHHHHHHH
Confidence 35799999999999999999999999999999999974 45555555444444322 2 2344556677777
Q ss_pred HHHHHHHhhhhhh-hhHh----hhcCcchhHHHHHHHHhhh-chhhhhHHhhhhhcccccC
Q 010350 445 AGLALSSFALSGL-YCTH----QDISPEYASILLGITNTVG-AVPGIVGVALTGYLLDSTH 499 (512)
Q Consensus 445 ~g~~~~~~~~~~~-~~~~----~~~~~~~~g~~~g~~~~~~-~lg~~i~p~i~G~l~~~~g 499 (512)
.|++.......-- +++. +.+|++..+...+...... .+-.+++..++-.+.|..|
T Consensus 131 gGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~ 191 (354)
T PF05631_consen 131 GGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG 191 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC
Confidence 7877665544322 2222 2355566666666555333 3344455555556666554
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0026 Score=63.32 Aligned_cols=74 Identities=18% Similarity=0.136 Sum_probs=62.8
Q ss_pred HHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHH
Q 010350 210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF 283 (512)
Q Consensus 210 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~ 283 (512)
-++.|.+.-.......++-++...|++++...+.+.....++..++|++...+....|.|+...+.++..++..
T Consensus 395 i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~ 468 (488)
T KOG2325|consen 395 IVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVA 468 (488)
T ss_pred hheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHH
Confidence 45667777777778889999999999999999999999999999999999999999999988877666655443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.096 Score=44.13 Aligned_cols=109 Identities=9% Similarity=-0.083 Sum_probs=76.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhh
Q 010350 377 VSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSG 456 (512)
Q Consensus 377 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 456 (512)
-.++.+....+..++.+.+.+++|.| +.++++.+...+-..... ..+.+..+....+.|++.+..+...
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K---------~sm~lg~~~y~~y~~~~~--~~~~~~l~~~s~l~G~~~a~lW~aq 110 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPK---------WSMILGSLGYAIYIASFF--YPNSYTLYPASALLGFGAALLWTAQ 110 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhH---------HHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHhhhhHHhhHhh
Confidence 34555666677778888899999854 555555444433332222 2344555677788899888888887
Q ss_pred hhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhccc
Q 010350 457 LYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLD 496 (512)
Q Consensus 457 ~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~ 496 (512)
...+.+...++.+++..|+.-.+...+.++|..+.-.+.+
T Consensus 111 g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 111 GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777787888899999999999998888888877655543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.02 Score=56.91 Aligned_cols=138 Identities=17% Similarity=0.069 Sum_probs=96.1
Q ss_pred HHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHH--H-Hhhh
Q 010350 125 ICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL--P-LLAG 201 (512)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~-~~~~ 201 (512)
+.++..-.+......+...-|++...+|..-++..+....+.+...++.+|+|..+.=+++...-..+..+. . +...
T Consensus 269 lLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~ 348 (432)
T PF06963_consen 269 LLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPG 348 (432)
T ss_pred HHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 334443334455555555569999999999999999999999999999999999888777755433222211 1 1111
Q ss_pred ------hHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHh
Q 010350 202 ------FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI 262 (512)
Q Consensus 202 ------~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 262 (512)
+...++.+-.+.=+|.=.+.....-++.|..|+++||...|...+..++...+...++-.+
T Consensus 349 ~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 349 SPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1223444444444455566677778889999999999999999999998888776665433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.032 Score=55.94 Aligned_cols=109 Identities=15% Similarity=-0.023 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcCCc--hHHHHHH--HHHHHHHHHHHHh--------hhhHHHHHHHHHHHHhhccc
Q 010350 152 GLVQSSFFWGYALSQLPGGWLAKIFGGR--KVLQTGV--LIWSLATALLPLL--------AGFMPGLVLSRVLVGIGEGV 219 (512)
Q Consensus 152 ~~~~s~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~--~~~~~~~~~~~~~--------~~~~~~~~~~r~l~G~~~~~ 219 (512)
-....+|.++-.+|..+..+.. .-++| ++++.+. +++....+++..- -++-+..++..++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 4566677788888877554331 11222 3333222 1222222222111 02335667779999999999
Q ss_pred chhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHH
Q 010350 220 SPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP 261 (512)
Q Consensus 220 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 261 (512)
.......+..+..++++|..+-.+...+..+|-.+|..++-.
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998999999888888888888888776543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0007 Score=69.69 Aligned_cols=154 Identities=21% Similarity=0.234 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHH-HHHHhhhhhhhhhhhcCC--chHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGG--RKVLQTGVL 187 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~g~--r~~~~~~~~ 187 (512)
+++.++...++.....+....+..+.|. ++.+|+.++.+++++..+..+ +.++|.+++|.+..|+.- |.......+
T Consensus 303 ~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v 382 (539)
T PF03137_consen 303 TNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIV 382 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHH
Confidence 4566777777777777888888889988 778899999999998876555 666899999999998743 443333322
Q ss_pred HHHHHHHH---HHHh-----------hh---------------------------------------hHHHHHHHHHHHH
Q 010350 188 IWSLATAL---LPLL-----------AG---------------------------------------FMPGLVLSRVLVG 214 (512)
Q Consensus 188 ~~~~~~~~---~~~~-----------~~---------------------------------------~~~~~~~~r~l~G 214 (512)
...+..++ ..+. .+ .+..+++..++.-
T Consensus 383 ~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~ 462 (539)
T PF03137_consen 383 VSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILS 462 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHH
Confidence 22222211 0000 00 0112344444444
Q ss_pred hhcccchhhHHHHHHhhcCccchhhHHHHHHhhh-hhHHHHHhhhhHHhccc
Q 010350 215 IGEGVSPSAATDLIARSIPLEERSRAVSFVFGGL-SFGSVAGLLLAPPIIEN 265 (512)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~l~~~ 265 (512)
+..+.........+-...++++|+.++|+..... .+|.+-||++.|.+.|.
T Consensus 463 ~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 463 FFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 4445555555566668889999999999977654 57889999999999885
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.089 Score=52.49 Aligned_cols=143 Identities=17% Similarity=0.188 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhh---hhcccCCCchh-hHHHHHHHHHHHHHhhhhhhhhhh---hcCCchHHHHHHHHH
Q 010350 117 GTTSLAFVICNMDKVNLSVAIIP---MSHRFGWNSSV-AGLVQSSFFWGYALSQLPGGWLAK---IFGGRKVLQTGVLIW 189 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~s~~~-~~~~~s~~~~~~~~~~~~~g~l~d---r~g~r~~~~~~~~~~ 189 (512)
+.+...++..++..+.+....|. .....+.+... .++..-...++..++.++.+.+.+ ++||++.+.++.++.
T Consensus 243 l~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~ 322 (461)
T KOG3098|consen 243 LLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIH 322 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHH
Confidence 34444455555666656555555 22223333222 222233334455556666777775 489999999988887
Q ss_pred HHHHHHHHHhhh-----------------hHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHH
Q 010350 190 SLATALLPLLAG-----------------FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGS 252 (512)
Q Consensus 190 ~~~~~~~~~~~~-----------------~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 252 (512)
.++.++.....+ +....+++-++.|++.+........++++..| ++|..+.+++..-..++.
T Consensus 323 ~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s 401 (461)
T KOG3098|consen 323 LIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVAS 401 (461)
T ss_pred HHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHH
Confidence 777665532211 23467788899999999999999999999994 888888888888777777
Q ss_pred HHHhhhhH
Q 010350 253 VAGLLLAP 260 (512)
Q Consensus 253 ~~~~~~~~ 260 (512)
.++-....
T Consensus 402 ~v~~f~~~ 409 (461)
T KOG3098|consen 402 CVAFFFSP 409 (461)
T ss_pred HHHhhhhh
Confidence 76555444
|
|
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.0034 Score=56.08 Aligned_cols=66 Identities=12% Similarity=0.258 Sum_probs=49.9
Q ss_pred CccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHH
Q 010350 326 DVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSI 391 (512)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~ 391 (512)
+.+|..-+++-.++...+...+.-.....-..|+|.|..+.+.+......++-++.++.+...+.+
T Consensus 191 Rm~W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v 256 (412)
T KOG4830|consen 191 RMHWTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMV 256 (412)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhh
Confidence 346677778888888888888888888888889998887777777776677777777776665554
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.024 Score=59.25 Aligned_cols=66 Identities=21% Similarity=0.213 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHH-HHHHHhhhhhhhhhhhcCC
Q 010350 113 YKLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFF-WGYALSQLPGGWLAKIFGG 178 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~-~~~~~~~~~~g~l~dr~g~ 178 (512)
++++....++..+..+....+..++|. +.++||.+...+..+.+... .+.++|.+++|.+..|+..
T Consensus 391 N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl 458 (735)
T KOG3626|consen 391 NPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKL 458 (735)
T ss_pred CchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecc
Confidence 345666677777777888888889998 77889999999999886555 4556888999999998753
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.29 Score=45.92 Aligned_cols=138 Identities=17% Similarity=0.066 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCh--hhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHH
Q 010350 350 WGHYTCLSWLPTYFSEELSLNL--TEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTL 427 (512)
Q Consensus 350 ~~~~~~~~~~p~~l~~~~g~s~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (512)
..........+.+..+ .+.+. ...++......+...++.++.|++.||.|+| ................
T Consensus 16 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---------~~~~~~~~~~~~~~~~ 85 (338)
T COG0477 16 LDLGLLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRR---------KVLIIGLLLFLLGTLL 85 (338)
T ss_pred HhcchHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccch---------HHHHHHHHHHHHHHHH
Confidence 3334445566666654 34444 4677888888888888889999999998643 1122222111111111
Q ss_pred hhccCC-CChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCc-chhHHHHHHHHh-hhchhhhhHHhhhhhcccc
Q 010350 428 SSIDLG-LPHWEIVGILTAGLALSSFALSGLYCTHQDISP-EYASILLGITNT-VGAVPGIVGVALTGYLLDS 497 (512)
Q Consensus 428 ~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~-~~~lg~~i~p~i~G~l~~~ 497 (512)
...... .....++.....|++.+...+.......+..++ ++++...+.... ...+|..++|.+.+.+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 86 LALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 223333444445666666666666666676666 678888888888 5778888888777777654
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.11 Score=38.34 Aligned_cols=50 Identities=18% Similarity=0.349 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHH
Q 010350 349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL 399 (512)
Q Consensus 349 ~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~ 399 (512)
+.+-+.+...+|...++ .++|..++|++.+..+++..+|.+...++.++.
T Consensus 5 GigRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~ 54 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHS 54 (85)
T ss_pred hhHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556777888887765 699999999999999999999999999887764
|
Note that many members are hypothetical proteins. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.48 Score=48.84 Aligned_cols=149 Identities=15% Similarity=-0.005 Sum_probs=79.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHH
Q 010350 344 AHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAV 423 (512)
Q Consensus 344 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (512)
..++.+++..+.-......+...+|.+....+.+.+.+.++..+|+.+.+++.++..++ . ...-..++++....
T Consensus 22 ~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~-----~-~~~e~~i~l~~~~~ 95 (521)
T PRK03612 22 AVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAG-----F-VAVELLLALLGGLS 95 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-----H-HHHHHHHHHHHHHH
Confidence 33444444455555555566666788888888888888888888888887765332211 0 00001111111111
Q ss_pred HHHHhhc-cCCCC--hHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhccc-ccC
Q 010350 424 CMTLSSI-DLGLP--HWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLD-STH 499 (512)
Q Consensus 424 ~~~~~~~-~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~-~~g 499 (512)
..++... ..... .......++.++..|...|........ ...++.+...|-.+.+..+|+++|+.+.|.+.- ..|
T Consensus 96 ~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~-~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG 174 (521)
T PRK03612 96 ALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQR-IRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLG 174 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcc
Confidence 1111110 00000 111222233445555554444433322 233346777888888999999999999887764 455
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.032 Score=54.58 Aligned_cols=152 Identities=15% Similarity=0.095 Sum_probs=93.2
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHH
Q 010350 336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQT 415 (512)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 415 (512)
+.......+.+...++...-..|+|+|+++ +|.+-...+..+....+.+.+.+++.|..+||...|.-+ ||-.+.
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GR----RRPfI~ 106 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGR----RRPFIL 106 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceeccccccccccccccccc----ccchHH
Confidence 444555555666666767778999999976 699999999999999999999999999999986544221 223333
Q ss_pred HHhHHHHHHHHHhhcc-------CCCC-h---HHHHHHHHHH-----HHHHHhhhhhhhhHhhhcCcchhHH-HHHHHHh
Q 010350 416 IAFLSPAVCMTLSSID-------LGLP-H---WEIVGILTAG-----LALSSFALSGLYCTHQDISPEYASI-LLGITNT 478 (512)
Q Consensus 416 ~~~~~~~~~~~~~~~~-------~~~~-~---~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~ 478 (512)
.+....++.+.+.... ..+. . ...+..+++| +.......+.-....+...++++.+ +++....
T Consensus 107 ~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~ 186 (498)
T KOG0637|consen 107 AGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSF 186 (498)
T ss_pred HhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHH
Confidence 3333333333322211 0111 1 0112222223 2333344445555666566655555 8888888
Q ss_pred hhchhhhhHHhhhh
Q 010350 479 VGAVPGIVGVALTG 492 (512)
Q Consensus 479 ~~~lg~~i~p~i~G 492 (512)
+..+|+.+|=.+++
T Consensus 187 f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 187 FMAVGNVLGYALGS 200 (498)
T ss_pred HHHhcceeeeeccc
Confidence 88888887766655
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.016 Score=55.45 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=3.1
Q ss_pred CChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhh
Q 010350 434 LPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALT 491 (512)
Q Consensus 434 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~ 491 (512)
+..+.++..+++|+..|......+....+.+++++|..+-.+.+..-.+|-.+|..+.
T Consensus 247 ~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 247 SDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp --------------------HHHH----------------------------------
T ss_pred chHHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677888888877777777777778888887777777777777766666553
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.38 Score=45.96 Aligned_cols=165 Identities=12% Similarity=-0.002 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcccCC-CchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHH-----
Q 010350 117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGW-NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS----- 190 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~----- 190 (512)
+.+.+++++...+.-+.......++.+++- |.........+-.....+..++.|...|+..|+|++...+++--
T Consensus 30 i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~v 109 (503)
T KOG2601|consen 30 IFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIV 109 (503)
T ss_pred ehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHH
Confidence 345566677766666677777776666654 33333333344444556677788899999999998876654322
Q ss_pred -HHHHHHHHhhh-----hHHHHHHHHHHHHhhcccch--hhHHHH--HHhhc----CccchhhHH---HHHHhhhhhHHH
Q 010350 191 -LATALLPLLAG-----FMPGLVLSRVLVGIGEGVSP--SAATDL--IARSI----PLEERSRAV---SFVFGGLSFGSV 253 (512)
Q Consensus 191 -~~~~~~~~~~~-----~~~~~~~~r~l~G~~~~~~~--~~~~~~--~~~~~----~~~~r~~~~---~~~~~~~~~g~~ 253 (512)
.+.++..+..+ +.+.+..+.++.-...+... ..+.++ --||. ..+.+.... +.....-.....
T Consensus 110 agglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~ 189 (503)
T KOG2601|consen 110 AGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNL 189 (503)
T ss_pred HHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhc
Confidence 22222222222 33455555444433322111 111111 11222 223344433 555556667889
Q ss_pred HHhhhhHHhccccCchHHHHHHHHHHHH
Q 010350 254 AGLLLAPPIIENLGWESVFYIFGLLGIA 281 (512)
Q Consensus 254 ~~~~~~~~l~~~~gw~~~f~~~~~~~~~ 281 (512)
+.|.+.|.+.+..+-|..-.+.++.+++
T Consensus 190 Lapv~tg~Iitfvsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 190 LAPVITGLIITFVSLRASAGTFAAWALV 217 (503)
T ss_pred hhhhhhcccceeechhhhhhhhHHHHHH
Confidence 9999999999888877755555554443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.37 Score=47.40 Aligned_cols=99 Identities=15% Similarity=0.013 Sum_probs=69.0
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHH
Q 010350 148 SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTG--VLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAAT 225 (512)
Q Consensus 148 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~ 225 (512)
..--|.+-++..+...++.+..|.+..++.+-.-+.++ .++.+...+++ ..+++.+...++-++.+.......+.+.
T Consensus 284 ~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm-~~t~~Iwv~Y~~yIif~~~y~fliTiA~ 362 (412)
T PF01770_consen 284 SVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLM-SFTGNIWVCYAGYIIFRSLYMFLITIAS 362 (412)
T ss_pred cccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33447888888888888999999996666664433333 22323333333 5677888888888888888888888888
Q ss_pred HHHHhhcCccchhhHHHHHHhh
Q 010350 226 DLIARSIPLEERSRAVSFVFGG 247 (512)
Q Consensus 226 ~~~~~~~~~~~r~~~~~~~~~~ 247 (512)
.-++....++.-+...|+.+..
T Consensus 363 ~qIA~~l~~e~yaLVFGiNtf~ 384 (412)
T PF01770_consen 363 FQIAKNLSEERYALVFGINTFV 384 (412)
T ss_pred HHHHHhccccceeeeeeeHHHH
Confidence 8888888777777777765543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=92.67 E-value=2.7 Score=42.57 Aligned_cols=150 Identities=11% Similarity=0.049 Sum_probs=81.4
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCC-----ChhhhHHHhhhhHHHHHHH-HHHHHHHHhHHHHcCCCccch
Q 010350 336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSL-----NLTEAAWVSILPPLASVLV-TSIAAQFADNLIATGVETTMV 409 (512)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~-----s~~~~g~~~~~~~~~~~~~-~~~~g~l~dr~~~~~~~~~~~ 409 (512)
|++....+..|+..+.++..- -++|.+.. +++...++.+...+...+. .++.+++++|+.+++...
T Consensus 7 ~k~~~~~l~fF~il~~Y~iLR-----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~--- 78 (472)
T TIGR00769 7 KKFLPLFLMFFCILFNYTILR-----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFY--- 78 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHH---
Confidence 455555555565554443332 34555544 3356666766665555555 788899999987652211
Q ss_pred hHHHHHHHhHHHHHHHHHhhccCCC--------------------------ChHHHHHHHHHHHHHHHhhh--hhhhhHh
Q 010350 410 RKICQTIAFLSPAVCMTLSSIDLGL--------------------------PHWEIVGILTAGLALSSFAL--SGLYCTH 461 (512)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~g~~~~~~~~--~~~~~~~ 461 (512)
.....++.....+.....+... ..|....+.+..=..+.... .-...+.
T Consensus 79 ---~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fan 155 (472)
T TIGR00769 79 ---TVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFAN 155 (472)
T ss_pred ---HHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111111111111111000 02222222222222232222 2334466
Q ss_pred hhcCcchhHHHHHHHHhhhchhhhhHHhhhhhccc
Q 010350 462 QDISPEYASILLGITNTVGAVPGIVGVALTGYLLD 496 (512)
Q Consensus 462 ~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~ 496 (512)
+...+++..+-.++....+++|..+++.+..++.+
T Consensus 156 di~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 156 QITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999988773
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.75 Score=46.02 Aligned_cols=68 Identities=10% Similarity=0.001 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchH
Q 010350 203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES 270 (512)
Q Consensus 203 ~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~ 270 (512)
+..+++.-++..+.....+.+..+.-+.+.+|.-=|+.|.+.++..++|+.--..+.-++++.+.++.
T Consensus 405 f~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~~ 472 (544)
T PF13000_consen 405 FLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVAT 472 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhccccc
Confidence 34566667777777778888888888999999999999999999999887765555555666555543
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.057 Score=51.71 Aligned_cols=106 Identities=21% Similarity=0.185 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhhh-cCCchHHHHHH--HHHHHHHHHHH-Hh---------hhhHHHHHHHHHHHHhhcccc
Q 010350 154 VQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGV--LIWSLATALLP-LL---------AGFMPGLVLSRVLVGIGEGVS 220 (512)
Q Consensus 154 ~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~--~~~~~~~~~~~-~~---------~~~~~~~~~~r~l~G~~~~~~ 220 (512)
...+|.++-.+|..+.++.--+ -.+|+++..+. +++ +-.++.+ .. -++-+..++..++.|+..|-.
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~f-iPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLF-IPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHH-HHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 4567888888888877764211 12444443321 111 1111222 11 122256677889999999999
Q ss_pred hhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhH
Q 010350 221 PSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAP 260 (512)
Q Consensus 221 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 260 (512)
.+....+..+..++++|..+-.+......+|-.+|..++-
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~ 305 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF 305 (309)
T ss_dssp -HHHH-----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988888877777788777776653
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.00 E-value=1.7 Score=40.61 Aligned_cols=65 Identities=22% Similarity=0.085 Sum_probs=55.8
Q ss_pred HhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHh
Q 010350 198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI 262 (512)
Q Consensus 198 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 262 (512)
.+.++++..++..+.-|+-.|..+....--+.+-.++++|..+|+.....-++|..++.+++-.+
T Consensus 337 ~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 337 WFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 45667788888889999999999998888888888889999999999999999998888776544
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=87.47 E-value=10 Score=34.82 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhh-cCCchHHH----HHHHHHHHHHHHHHHhh-h---hHHHHHHHHHHHHhhcccchh
Q 010350 152 GLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQ----TGVLIWSLATALLPLLA-G---FMPGLVLSRVLVGIGEGVSPS 222 (512)
Q Consensus 152 ~~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~----~~~~~~~~~~~~~~~~~-~---~~~~~~~~r~l~G~~~~~~~~ 222 (512)
....-++..++.+|.+..|+.... +.||+.+. .+.+++.+..++..... + ....+++.-|+.|++.=+..+
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 445556777777888888988875 45555444 22333333332221111 1 245677777888877544444
Q ss_pred h
Q 010350 223 A 223 (512)
Q Consensus 223 ~ 223 (512)
+
T Consensus 224 V 224 (267)
T PF07672_consen 224 V 224 (267)
T ss_pred H
Confidence 3
|
|
| >PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length | Back alignment and domain information |
|---|
Probab=86.78 E-value=22 Score=31.61 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=28.0
Q ss_pred hhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHH
Q 010350 230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL 278 (512)
Q Consensus 230 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~ 278 (512)
+.+..+++.+.-........++..+|..+++.+.+..+. +..++.+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~~-~al~~~~~~ 200 (209)
T PF06912_consen 153 RYLRGKDRALRRALRYLLIILSFFIGAILGALLYRRLGF-WALLLPALL 200 (209)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHH
Confidence 333334433444555666667777777788888877775 344444443
|
The function of this family is unknown although a few members are thought to be membrane proteins. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.64 E-value=12 Score=34.40 Aligned_cols=131 Identities=16% Similarity=0.057 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcCCc--hHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHhhcccch
Q 010350 151 AGLVQSSFFWGYALSQLPGGWLAKIFGGR--KVLQTGVLIWSLATALLPLLAG-------FMPGLVLSRVLVGIGEGVSP 221 (512)
Q Consensus 151 ~~~~~s~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~r~l~G~~~~~~~ 221 (512)
-|.+.+.+.++.++|+-+..++..|-..| ..+.+..++..+...+. ..+. +...-+++-.+.-.+.|..+
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lp-ilt~~vsP~kes~~~s~i~F~~~E~cvGlfw 362 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLP-ILTSSVSPSKESPSESLIGFCLFEACVGLFW 362 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHH-HHHhccCCCcCCchHHHHHHHHHHHHHhhcc
Confidence 48899999999999988888887765443 44444444433333222 2221 11223445555667778999
Q ss_pred hhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHH
Q 010350 222 SAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW 282 (512)
Q Consensus 222 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~ 282 (512)
|...-+=++..|+++|+..+.++..-.++-..++-..--.-....+-|..|-++.....+.
T Consensus 363 PSimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a 423 (454)
T KOG4332|consen 363 PSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVA 423 (454)
T ss_pred hHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHH
Confidence 9999999999999999999998877655544443221100001235567777766655443
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.58 E-value=1.5 Score=42.84 Aligned_cols=107 Identities=18% Similarity=0.054 Sum_probs=65.3
Q ss_pred HHHHHH-HHHHHHHhhhhhhhhhhhcCCchHHHHHHH-HHHHHHHHHHH------hhhhHHHHHHHHHHHHhhcccchhh
Q 010350 152 GLVQSS-FFWGYALSQLPGGWLAKIFGGRKVLQTGVL-IWSLATALLPL------LAGFMPGLVLSRVLVGIGEGVSPSA 223 (512)
Q Consensus 152 ~~~~s~-~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~r~l~G~~~~~~~~~ 223 (512)
-+...+ +.+...+|.+.+.++-+.= ||...+.+.+ +..+-.+.+|. .-.+-+.++....+.|+..|-....
T Consensus 285 ~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl 363 (406)
T KOG1479|consen 285 LLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSL 363 (406)
T ss_pred HHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhh
Confidence 344445 7777777766666665543 3433333322 11122222111 1122367788889999999988888
Q ss_pred HHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhh
Q 010350 224 ATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259 (512)
Q Consensus 224 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 259 (512)
.+.+..+..+++++..+-.+.......|.+.|..++
T Consensus 364 ~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 364 IMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred eehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 888888888888877766666666666666665544
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=85.58 E-value=0.85 Score=44.97 Aligned_cols=73 Identities=7% Similarity=0.082 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcc---hhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEEEecC
Q 010350 436 HWEIVGILTAGLALSSFALSGLYCTHQDISPE---YASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSYQCPP 509 (512)
Q Consensus 436 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f~~~~ 509 (512)
...++++.+.+++.|..=+....+..+.++++ ++.+.+..++...++|..+++.+.+++-+..| |.+.|.+.+
T Consensus 34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~-~~~~f~i~~ 109 (372)
T PF00854_consen 34 GLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYG-WFLGFGIPA 109 (372)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS--HHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccc-hhhhhhHHH
Confidence 35667777888888888888888888777654 57777888899999999999999999999887 777765543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=83.47 E-value=36 Score=31.31 Aligned_cols=23 Identities=9% Similarity=-0.178 Sum_probs=12.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHh
Q 010350 344 AHFCGSWGHYTCLSWLPTYFSEE 366 (512)
Q Consensus 344 ~~~~~~~~~~~~~~~~p~~l~~~ 366 (512)
...+....+|+....=..|+++.
T Consensus 186 ~LAv~aGvlyGs~fvPv~Yi~~~ 208 (254)
T PF07857_consen 186 ILAVFAGVLYGSNFVPVIYIQDH 208 (254)
T ss_pred HHHHHHHHHHhcccchHHHHHhC
Confidence 33344445566555555677664
|
The region concerned is approximately 280 residues long. |
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=81.47 E-value=75 Score=33.41 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=18.8
Q ss_pred CChhhhHHHhhhhHHHHHHHHHHHHHHHhHHH
Q 010350 369 LNLTEAAWVSILPPLASVLVTSIAAQFADNLI 400 (512)
Q Consensus 369 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~ 400 (512)
-++...+.++..++++..+--++.+....|+.
T Consensus 322 g~~~~g~~~l~~~gLG~~~Plll~~~~~~~~l 353 (571)
T PRK00293 322 GDLLLGGLTLYLLALGMGLPLILITTFGNKLL 353 (571)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555566666677776555555555555543
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.08 E-value=8.8 Score=29.43 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 010350 382 PLASVLVTSIAAQFADNL 399 (512)
Q Consensus 382 ~~~~~~~~~~~g~l~dr~ 399 (512)
.+.+++.....||+.||+
T Consensus 52 fIsGilVGa~iG~llD~~ 69 (116)
T COG5336 52 FISGILVGAGIGWLLDKF 69 (116)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345566666788999997
|
|
| >KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.98 E-value=19 Score=35.52 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=23.0
Q ss_pred hhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCC
Q 010350 134 SVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG 178 (512)
Q Consensus 134 ~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~ 178 (512)
..+...+-+.+|++..-.|+- +...|..+--++...+.-|-|-
T Consensus 444 VWwa~~iGeT~gIp~eIMGLT--iLAAGTSIPDlitSvIVARKGl 486 (588)
T KOG1307|consen 444 VWWANIIGETLGIPDEIMGLT--ILAAGTSIPDLITSVIVARKGL 486 (588)
T ss_pred HHHHHHcccccCCCHHHhhhh--hhhcCCchHHhhHhhhhccccc
Confidence 334555677778777766542 2333333444555555555553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 3e-56
Identities = 64/400 (16%), Positives = 134/400 (33%), Gaps = 18/400 (4%)
Query: 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGW 171
R+++ + + + N ++A+ P G++ G S Y S+ G
Sbjct: 26 RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 84
Query: 172 LAKIFGGRKVLQTGVLIWSLATALLPLLAGF---MPGLVLSRVLVGIGEGVSPSAATDLI 228
++ R L G+++ + + + + + + L G +G+ +
Sbjct: 85 VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 144
Query: 229 ARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYIFGLLGIAW-FSGF 286
+ER VS + G LL + W + Y+ I F
Sbjct: 145 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 204
Query: 287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346
++++ S G + +E+ + K + + + +K +W + A+
Sbjct: 205 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL--TAKQIFMQYVLPNKLLWYIAIANV 262
Query: 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET 406
Y L W PTY E L +++W L A + T + +D +
Sbjct: 263 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 322
Query: 407 TMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTH-QDIS 465
T V + + G P +++ ++ G + + L H +++
Sbjct: 323 TGVFFMTLVTIAT-----IVYWMNPAGNPTVDMICMIVIGFLI--YGPVMLIGLHALELA 375
Query: 466 P-EYASILLGITNTVGAVPG-IVGVALTGYLLDSTHSWSV 503
P + A G T G + G + A+ GY +D
Sbjct: 376 PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG 415
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 2e-10
Identities = 59/398 (14%), Positives = 125/398 (31%), Gaps = 52/398 (13%)
Query: 133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192
+ + F + AGL+QS+F++GY + +P G L K + + TG+ +++L
Sbjct: 45 NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG 104
Query: 193 TALLPLLAGFM---PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLS 249
A L A + ++ ++ G G +AA + P ++ S
Sbjct: 105 -AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163
Query: 250 FGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSN--------GATLA 301
FG++ ++ +I + + + S +K +A
Sbjct: 164 FGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVA 223
Query: 302 PRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPT 361
S + + + + R + + A FC C S+L
Sbjct: 224 LLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIR 283
Query: 362 YFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSP 421
Y EE+ A + + + + ++ + +
Sbjct: 284 YAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTW------------LISRFAPHKVLAAY 331
Query: 422 AVCMTLSSIDLGLPHWEIVGILTAG-LALSSFALSGLYCTHQDISPEYASIL-LGI---- 475
A+ ++ G + L + L + S +Y +I LGI
Sbjct: 332 ALIAMALC---------LISAFAGGHVGLIALTLCSAFM-----SIQYPTIFSLGIKNLG 377
Query: 476 --TNTVGA--VPGIVGVA----LTGYLLDSTHSWSVSY 505
T + V I+G + G++ D+ + +
Sbjct: 378 QDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAE 415
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 63/380 (16%), Positives = 117/380 (30%), Gaps = 63/380 (16%)
Query: 140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL 199
M+ V ++ Y +SQL G ++ G R V+ G+ I+ LAT + +
Sbjct: 26 MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA-VT 84
Query: 200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI-----PLEERSRAVSFVFGGLSFGSVA 254
+ L+ + + G+G + ++AR++ + A S + G+
Sbjct: 85 TSSLTVLIAASAMQGMG-----TGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSP-- 137
Query: 255 GLLLAPPI----IENLGWESVFYIFGLLGIA-WFSGFKILQEGETSNGATLAPRSNYINM 309
LLAP I W + + +L FS + + E T + +
Sbjct: 138 --LLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPE-------TRPVDAPRTRL 188
Query: 310 KKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSL 369
S +K +F + + G G + L L
Sbjct: 189 LTS----------------YKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGL 232
Query: 370 NLTEAAWVSILPPLASVLVTSIAAQFA---DNLIATGVETTMVRKICQTIA-------FL 419
+ + + ILP A+ A + L+ V ++ + I
Sbjct: 233 SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVW 292
Query: 420 SPAVCMTLSSIDLGLPHWEIVGILTAGLALSSF-----ALSGLYCTHQDISPEYASILLG 474
+ V L G+ + L A+ F L Q+I + L
Sbjct: 293 TLLVPAALFFFGAGM-----LFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSA 347
Query: 475 ITNTVGAVPGIVGVALTGYL 494
+ G + + L G L
Sbjct: 348 MLPQTGQGSLGLLMTLMGLL 367
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 2e-05
Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 2/113 (1%)
Query: 170 GWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA 229
+ GG+ L I S+ +V+ + L I
Sbjct: 280 PLIINRIGGKNALLLAGTIMSVRIIGSSFATSA-LEVVILKTLHMFEVPFLLVGCFKYIT 338
Query: 230 RSIPLEERSRAVSFVFG-GLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIA 281
+ + F + +LA + E++G++ + + GL+ +
Sbjct: 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALG 391
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 4/150 (2%)
Query: 144 FGWNSSVAGLVQSSFFWGYALSQLPGGWLA-KIFGGRKVLQTGVLIWSLATALLPLLAGF 202
+ A + + + LS GG++A +I G R + G ++ L +L L G
Sbjct: 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFG- 107
Query: 203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR--AVSFVFGGLSFGSVAGLLLAP 260
L S +L+ IG G + L+ +R R S G++ G+ L+
Sbjct: 108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVG 167
Query: 261 PIIENLGWESVFYIFGLLGIAWFSGFKILQ 290
E G+ F + + +
Sbjct: 168 AAQEAAGYHVAFSLAAIGMFIGLLVYYFGG 197
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 512 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.97 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.96 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.94 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.63 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.45 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.44 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.32 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.23 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.15 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.1 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-38 Score=316.46 Aligned_cols=385 Identities=15% Similarity=0.191 Sum_probs=299.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 191 (512)
+++.+..+++..+...++...+.+.+|.+.+++ .+..+.+++.+++.+++.++++++|+++||+|||++++++.++.++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence 456677788888888899999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh---hhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccC-
Q 010350 192 ATALLPLL---AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG- 267 (512)
Q Consensus 192 ~~~~~~~~---~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g- 267 (512)
+.++.+.. +++++.++++|++.|++.+...+...++++|++|+++|++++++...+..+|.+++|.+++++.+..|
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 184 (451)
T 1pw4_A 105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND 184 (451)
T ss_dssp HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCC
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 98777531 67778999999999999999999999999999999999999999999999999999999999888898
Q ss_pred chHHHHHHHHHHHHHHHH-HHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHH
Q 010350 268 WESVFYIFGLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346 (512)
Q Consensus 268 w~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (512)
||+.|++.+++.++..+. .++++|+++.......++.+... ++. ....++.+...++..+++++++|.++...+..+
T Consensus 185 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (451)
T 1pw4_A 185 WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDY-PDD-YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV 262 (451)
T ss_dssp STTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC---------------CCTHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccc-ccc-chhhhhcccccccchHHHHHcCHHHHHHHHHHH
Confidence 999999999887765544 45556544332221111110000 000 000001111111222467889999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHH--HHcCCCccchhHHHHHHHhHHHHHH
Q 010350 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL--IATGVETTMVRKICQTIAFLSPAVC 424 (512)
Q Consensus 347 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (512)
+.....+....++|.|+++.+|++..+.+.+.+...++.+++.++.+++.||+ ++| +.......+...++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~--------~~~~~~~~~~~~~~ 334 (451)
T 1pw4_A 263 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR--------GATGVFFMTLVTIA 334 (451)
T ss_dssp HHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--------hhHHHHHHHHHHHH
Confidence 99999999999999999887899999999999999999999999999999998 642 33333333333244
Q ss_pred HHHhhccCC-CChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhch-hhhhHHhhhhhcccccCcce
Q 010350 425 MTLSSIDLG-LPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAV-PGIVGVALTGYLLDSTHSWS 502 (512)
Q Consensus 425 ~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~i~p~i~G~l~~~~g~~~ 502 (512)
+.+...... +.....+..++.|++.+...+.......+..|++++|++.|+.+++.++ |.+++|.+.|.+.|..| |+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~ 413 (451)
T 1pw4_A 335 TIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WD 413 (451)
T ss_dssp HHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SH
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cH
Confidence 444433322 3333445556666666666666667778888999999999999999999 99999999999999987 66
Q ss_pred EEEEec
Q 010350 503 VSYQCP 508 (512)
Q Consensus 503 ~~f~~~ 508 (512)
..|++.
T Consensus 414 ~~~~~~ 419 (451)
T 1pw4_A 414 GGFMVM 419 (451)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=302.42 Aligned_cols=366 Identities=13% Similarity=0.141 Sum_probs=291.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 191 (512)
+++.+..+++.++...++.....+..|.+.+++|+|..+.+++.+++.+++.++.+++|+++||+|||++++++.+++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~ 103 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence 34566677777888888888999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHH--HhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhc-cccC-
Q 010350 192 ATALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII-ENLG- 267 (512)
Q Consensus 192 ~~~~~~--~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~g- 267 (512)
+.++.. ..+++++.++++|++.|++.+...+...++++|++|+++|++++++.+.+..+|.+++|.+++.+. +..+
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 887762 245678999999999999999999999999999999999999999999999999999999999998 6555
Q ss_pred ------------------------chHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCC
Q 010350 268 ------------------------WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGES 323 (512)
Q Consensus 268 ------------------------w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (512)
||+.|++.+++.++..+..++.+.++.++..+.++++ .
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------------~ 245 (438)
T 3o7q_A 184 QSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQ------------------G 245 (438)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSST------------------T
T ss_pred ccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccc------------------c
Confidence 9999998887776665555554333222211111000 0
Q ss_pred CCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHc
Q 010350 324 LKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTY-FSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT 402 (512)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~ 402 (512)
.....+++++|+|.++...+..++..........++|.| +++.+|++..+++.+.+...++.++++++.+++.||+++|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~ 325 (438)
T 3o7q_A 246 SFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH 325 (438)
T ss_dssp SHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred chhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 011235788899999999999999988899999999999 8887899999999999999999999999999999999754
Q ss_pred CCCccchhHHHHHHHhHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhch
Q 010350 403 GVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAV 482 (512)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l 482 (512)
.....+.++..++..+.... ...+..+..++.+++.+...+.......+..+++ ++.+.++.. ...+
T Consensus 326 ---------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~ 392 (438)
T 3o7q_A 326 ---------KVLAAYALIAMALCLISAFA--GGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTII 392 (438)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHH
Confidence 23333334444444333332 2334444556667777766666666666766655 888888877 6779
Q ss_pred hhhhHHhhhhhcccccCcceEEEEec
Q 010350 483 PGIVGVALTGYLLDSTHSWSVSYQCP 508 (512)
Q Consensus 483 g~~i~p~i~G~l~~~~g~~~~~f~~~ 508 (512)
|++++|.+.|++.|..|+++..|++.
T Consensus 393 g~~~~~~~~g~l~~~~g~~~~~~~~~ 418 (438)
T 3o7q_A 393 GGGIVTPVMGFVSDAAGNIPTAELIP 418 (438)
T ss_dssp HHHHHHHHHHHHHHHHTSSGGGGHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 99999999999999988676665543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=289.60 Aligned_cols=354 Identities=15% Similarity=0.117 Sum_probs=282.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHH
Q 010350 117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL 196 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 196 (512)
..+++..+...++...+.+.+|.+.+++|.|..+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 45566677788889999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCchHHHHHHH
Q 010350 197 PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG 276 (512)
Q Consensus 197 ~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~ 276 (512)
+ ..++++.+++.|++.|++.+...+...+++.|++|+++|++++++......+|..++|.+++++.++.|||+.|++.+
T Consensus 83 ~-~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (375)
T 2gfp_A 83 V-TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLL 161 (375)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred H-HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHH
Confidence 5 567789999999999999999999999999999999999999999999999999999999999999899999999988
Q ss_pred HHHHHHHH-HHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHH
Q 010350 277 LLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355 (512)
Q Consensus 277 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (512)
++.++..+ ..+.+||+++.++++ +....++++++|+|.++...+..++........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (375)
T 2gfp_A 162 VLCAGVTFSMARWMPETRPVDAPR-----------------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAF 218 (375)
T ss_dssp HHHHHHHCCCCCSSCCCSTTTCCC-----------------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcccCCCCccc-----------------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 87776655 334455443321111 001223467889999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHh-HHHHHHHHHhhc-cCC
Q 010350 356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAF-LSPAVCMTLSSI-DLG 433 (512)
Q Consensus 356 ~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~ 433 (512)
..+.|.|+++.+|.++.+.+.+.+...++.++++.+.+++.||.+++ ....... ......+..... ...
T Consensus 219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 289 (375)
T 2gfp_A 219 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL---------MWQSVICCLLAGLLMWIPDWFGVM 289 (375)
T ss_dssp HHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH---------HHHHHHHHHHTSSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhhccc
Confidence 99999999987899999999999999999999999999999998641 1111111 111111001111 011
Q ss_pred CChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccccCcceEEE
Q 010350 434 LPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSVSY 505 (512)
Q Consensus 434 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f 505 (512)
+....++..++.+++.+...+.......+..| +++|++.|+.+...++|..++|.+.|.+.+..+ |...+
T Consensus 290 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~-~~~~~ 359 (375)
T 2gfp_A 290 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ-GSLGL 359 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-HHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccHHH
Confidence 12223445566677777777777777777676 899999999999999999999999999987654 54443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=263.05 Aligned_cols=376 Identities=15% Similarity=0.097 Sum_probs=261.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhh-hhcc-----cCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCchHHHHHHHHHH
Q 010350 118 TTSLAFVICNMDKVNLSVAIIP-MSHR-----FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWS 190 (512)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~ 190 (512)
.+.+..+...++...+...++. +.++ +|.|..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~ 96 (491)
T 4aps_A 17 TLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIM 96 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 3444444444554444444444 4444 99999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccc--hhhHHHHHHhhhhhHHHHHhhhhHHhccccCc
Q 010350 191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEE--RSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW 268 (512)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw 268 (512)
++.++.+ .+++++.++++|++.|++.+...+...++++|++|+++ |+.++++++....+|..++|.+++++.++.||
T Consensus 97 ~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 175 (491)
T 4aps_A 97 LGHIVLA-LPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGY 175 (491)
T ss_dssp HHHHHHH-SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHH-HhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 8887774 56777999999999999999999999999999999988 77888889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhh-ccCCCCCCCCCCcchhhhhhhhhhhh---------------hHH--------------
Q 010350 269 ESVFYIFGLLGIAWFSGFKIL-QEGETSNGATLAPRSNYINMKKSLSA---------------SLE-------------- 318 (512)
Q Consensus 269 ~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~-------------- 318 (512)
|+.|++.++..++..+...+. ++..+++....++..+..+.++.... ...
T Consensus 176 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (491)
T 4aps_A 176 HVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTI 255 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhH
Confidence 999999887766655544433 22221111111110000000000000 000
Q ss_pred ----------hhcCCCCCccHHHHhhcHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHH
Q 010350 319 ----------EMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLV 388 (512)
Q Consensus 319 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~ 388 (512)
....+..........+....+...+..++....+.....++|.|+++..+.+....+.+.....++.+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (491)
T 4aps_A 256 VAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLY 335 (491)
T ss_dssp HHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHH
Confidence 0000000000011112233445555555566666667788899998878888778888889999999999
Q ss_pred HHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhcc--------CCCChHHHHHHHHHHHHHHHhhhhhhhhH
Q 010350 389 TSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID--------LGLPHWEIVGILTAGLALSSFALSGLYCT 460 (512)
Q Consensus 389 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 460 (512)
.++.+++.||+++|+.. ....+..+..+.++++.+.... ..+..+.++..++.+++.+...+......
T Consensus 336 ~~~~~~l~~r~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 411 (491)
T 4aps_A 336 TPFFAWLWTAWKKNQPS----SPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVT 411 (491)
T ss_dssp HHHHHHHHHHTTTC-------CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHHhccCCC----chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999876432 1122223333333333322221 12334555666777777777777777788
Q ss_pred hhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhccccc
Q 010350 461 HQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDST 498 (512)
Q Consensus 461 ~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~~ 498 (512)
.+..|+++||++.|+.++..++|..++|.+.|.+.+..
T Consensus 412 ~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~ 449 (491)
T 4aps_A 412 TKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS 449 (491)
T ss_dssp HHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88899999999999999999999999999999998763
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-29 Score=253.44 Aligned_cols=370 Identities=16% Similarity=0.161 Sum_probs=252.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcccCC--------CchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHH
Q 010350 117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGW--------NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLI 188 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 188 (512)
+..++..++.++|...++..+|.+.++++. +..+.|++.+++.++..+|++++|+++||+|||++++++.++
T Consensus 15 ~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l 94 (491)
T 4gc0_A 15 LVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVL 94 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 344566677788999999999988877743 345678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-----------------hhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhH
Q 010350 189 WSLATALLPL-----------------LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFG 251 (512)
Q Consensus 189 ~~~~~~~~~~-----------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 251 (512)
+.++.++.++ .++++++++++|+++|++.|...+....+++|+.|+++|++..++...+..+|
T Consensus 95 ~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g 174 (491)
T 4gc0_A 95 FFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFG 174 (491)
T ss_dssp HHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhh
Confidence 9999887753 46788999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHhccc--------cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchh--hhhhhhhhhh---hHH
Q 010350 252 SVAGLLLAPPIIEN--------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSN--YINMKKSLSA---SLE 318 (512)
Q Consensus 252 ~~~~~~~~~~l~~~--------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~ 318 (512)
..+++.++..+... .+||+.+.+..+..++..+..++.||+++....+.+.++. ..++...... +..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~ 254 (491)
T 4gc0_A 175 QLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQ 254 (491)
T ss_dssp HHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHH
Confidence 99999988876543 3477777777777777777777888876532222221111 1111110000 000
Q ss_pred ----hhcCCCCCccHHHHhhcHhHHHHHH-HHHHhHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHH
Q 010350 319 ----EMGESLKDVPWKAIFRSKAVWAMIY-AHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAA 393 (512)
Q Consensus 319 ----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g 393 (512)
...+..+.......++.+....... ..+......+.+..|.|.+.+ ..+.+...........++..+++.++.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (491)
T 4gc0_A 255 EIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK-TLGASTDIALLQTIIVGVINLTFTVLAI 333 (491)
T ss_dssp HHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHH-hcCCCccchhhHHHHHHHHHHHHHHHHH
Confidence 0000011111223333444433333 333344445556666776665 4688888888788888899999999999
Q ss_pred HHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHHh--hccCCCChHH-HHHHHHHHHHHHH-hhhhhhhhHhhhcCcchh
Q 010350 394 QFADNLIATGVETTMVRKICQTIAFLSPAVCMTLS--SIDLGLPHWE-IVGILTAGLALSS-FALSGLYCTHQDISPEYA 469 (512)
Q Consensus 394 ~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~ 469 (512)
++.||+|+| .....+.....+++... ........+. ++..++...+++. ..+....+..+.+|++.|
T Consensus 334 ~l~dr~Grr---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R 404 (491)
T 4gc0_A 334 MTVDKFGRK---------PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR 404 (491)
T ss_dssp HHHHHHCSH---------HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTH
T ss_pred HHHHhhcCc---------chhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHH
Confidence 999999864 22222222222222211 1112222222 2222222222222 233344556677899999
Q ss_pred HHHHHHHHhhhchhhhhHHhhhhhccc
Q 010350 470 SILLGITNTVGAVPGIVGVALTGYLLD 496 (512)
Q Consensus 470 g~~~g~~~~~~~lg~~i~p~i~G~l~~ 496 (512)
+++.|+.+.++++++++++.+...+.+
T Consensus 405 ~~~~g~~~~~~~~~~~i~~~~~p~l~~ 431 (491)
T 4gc0_A 405 GKALAIAVAAQWLANYFVSWTFPMMDK 431 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988776654
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-29 Score=250.66 Aligned_cols=366 Identities=11% Similarity=0.014 Sum_probs=236.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHH
Q 010350 116 IGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA 194 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 194 (512)
+..+....+........+.+.+|. +++++|+|..+.|++.+++.+++.++++++|+++||+|||++++++..+++++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~ 88 (417)
T 2cfq_A 9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFA 88 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 334444445555566666777777 5567999999999999999999999999999999999999999988777654321
Q ss_pred HHH--HhhhhH-HHHHHHHHHHHhhcccchhhHHHHHHhhcCc--cchhhHHHHHHhhhhhHHHHHhhhhHHhccccCch
Q 010350 195 LLP--LLAGFM-PGLVLSRVLVGIGEGVSPSAATDLIARSIPL--EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE 269 (512)
Q Consensus 195 ~~~--~~~~~~-~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~ 269 (512)
... ...... ..++..+++.|++.+...+.....+.++.++ ++++...+.......+|..++|.+++++.+ .+|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~ 167 (417)
T 2cfq_A 89 PFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQ 167 (417)
T ss_dssp HHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchh
Confidence 110 111111 1234456666665554444434444444432 456777888888999999999999999886 5899
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHHhH
Q 010350 270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS 349 (512)
Q Consensus 270 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (512)
+.|++.++..++..+..++.++++++..+. +++++. .+++.....+++++++|.++...+..++..
T Consensus 168 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (417)
T 2cfq_A 168 FVFWLGSGCALILAVLLFFAKTDAPSSATV-ANAVGA-------------NHSAFSLKLALELFRQPKLWFLSLYVIGVS 233 (417)
T ss_dssp HHHTTTTTTTTTHHHHSCSSCCCCSCSSCS-SSSSSS-------------CCCCCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCccccccccc-cccccc-------------ccccccHHHHHHHhcCCchhhHHHHHHHHH
Confidence 999987766544444444443332111100 000000 000011123457888999888777666665
Q ss_pred HHHHHHHHHHHHHHHHhcCC---ChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHH
Q 010350 350 WGHYTCLSWLPTYFSEELSL---NLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT 426 (512)
Q Consensus 350 ~~~~~~~~~~p~~l~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (512)
..++....++|.|+.+.++. +....+.+.++..++.+++.++.+++.||+++| +. ...+.+..++...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~--------~~-l~~~~~~~~~~~~ 304 (417)
T 2cfq_A 234 CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK--------NA-LLLAGTIMSVRII 304 (417)
T ss_dssp HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH--------HH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH--------HH-HHHHHHHHHHHHH
Confidence 66666677899998765542 234457777888888899999999999999864 22 3333333334333
Q ss_pred HhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHH-HHhhhchhhhhHHhhhhhcccccCcceEEE
Q 010350 427 LSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGI-TNTVGAVPGIVGVALTGYLLDSTHSWSVSY 505 (512)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~lg~~i~p~i~G~l~~~~g~~~~~f 505 (512)
..... .+....++..++.+++.+...........+..|++.||++.|+ +++..++|++++|.++|++.|..| +...|
T Consensus 305 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f 382 (417)
T 2cfq_A 305 GSSFA-TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAY 382 (417)
T ss_dssp HHTTC-CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHH
T ss_pred HHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHH
Confidence 33322 2223333333344444444444455667777899999999999 488889999999999999999776 65555
Q ss_pred Ee
Q 010350 506 QC 507 (512)
Q Consensus 506 ~~ 507 (512)
.+
T Consensus 383 ~~ 384 (417)
T 2cfq_A 383 LV 384 (417)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-26 Score=233.86 Aligned_cols=374 Identities=15% Similarity=0.113 Sum_probs=231.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhh-hhcccC------CCchhhHHHHHHHHHHHHHhhhhhhhhhhhc-CCchHHHHHHHHHH
Q 010350 119 TSLAFVICNMDKVNLSVAIIP-MSHRFG------WNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWS 190 (512)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g------~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~ 190 (512)
+.+..++..+......+.++. +.+++| .|..+.+++.+++.++..++++++|+++||+ |||+++.++.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~ 96 (524)
T 2xut_A 17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYC 96 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 334444444555555555554 677889 9999999999999999999999999999999 99999999999998
Q ss_pred HHHHHHHHhhh-hHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHH---HHhhhhhHHHHHhhhhHHhcccc
Q 010350 191 LATALLPLLAG-FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSF---VFGGLSFGSVAGLLLAPPIIENL 266 (512)
Q Consensus 191 ~~~~~~~~~~~-~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~l~~~~ 266 (512)
++.++.+ .++ +++.+++.|++.|++.+...+...++++|++|+++|+++.+. +..+..+|.+++|.+++++.+..
T Consensus 97 ~~~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (524)
T 2xut_A 97 VGHAFLA-IFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF 175 (524)
T ss_dssp HHHHHHH-HTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred HHHHHHH-HhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8887775 455 778999999999999999999999999999999999876666 88999999999999999999989
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchh---h----hhhhhhhhhh---HH-------------hhc--
Q 010350 267 GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSN---Y----INMKKSLSAS---LE-------------EMG-- 321 (512)
Q Consensus 267 gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~---~~-------------~~~-- 321 (512)
|||+.|++.+++.++..+..++..++.+.+..+..+..+ . .+.++...+. .. ..+
T Consensus 176 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (524)
T 2xut_A 176 GAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTL 255 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchh
Confidence 999999998887666555444332211111100000000 0 0000000000 00 000
Q ss_pred --------------CCCCCccHH------------HHhhcHhHHHHHHHHHHhHHHHHH----HHHHHHHHHHHhcCCCh
Q 010350 322 --------------ESLKDVPWK------------AIFRSKAVWAMIYAHFCGSWGHYT----CLSWLPTYFSEELSLNL 371 (512)
Q Consensus 322 --------------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~p~~l~~~~g~s~ 371 (512)
+...+.+|+ ...+.+..+..... ++.....+. ....++.+..+ .+.+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 333 (524)
T 2xut_A 256 GIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVL-FALVTPFWSLFDQKASTWILQAND-MVKPQ 333 (524)
T ss_dssp CSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHH-HTTSHHHHTTTSSTTTHHHHHHHH-SCCCS
T ss_pred hhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHH-HHHHHHHHHHHhccchhhHHhHHh-cCCCe
Confidence 000000110 00111222222111 111111111 12233333322 23322
Q ss_pred -hhhHHHhhhhHHHHHHHHHHHHHHH-hHHHHcCCCccchhHHHHHHHhHHHHHHHHHhhcc--------CCCChHHHHH
Q 010350 372 -TEAAWVSILPPLASVLVTSIAAQFA-DNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID--------LGLPHWEIVG 441 (512)
Q Consensus 372 -~~~g~~~~~~~~~~~~~~~~~g~l~-dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 441 (512)
...+.+.....++.+++..+.+++. ++.++++.+.. .+....++.++.++++.+.... ..+..+.++.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (524)
T 2xut_A 334 WFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLT--ALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILP 411 (524)
T ss_dssp SSCHHHHHTTSGGGHHHHGGGTTTC------------C--CHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHH
T ss_pred eecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHH
Confidence 2455666665566666665555543 22222111111 1122334444444444433331 1234455666
Q ss_pred HHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchhhhhHHhhhhhcccc
Q 010350 442 ILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDS 497 (512)
Q Consensus 442 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~p~i~G~l~~~ 497 (512)
.++.+++.+...+.......+..|+++||+++|+.++..++|+.++|.+.|.+.+.
T Consensus 412 ~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 412 YALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77778888877888888888889999999999999999999999999999999884
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=151.80 Aligned_cols=177 Identities=14% Similarity=0.054 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcc-cCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhc--CCchHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVLQTGVLIWS 190 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--g~r~~~~~~~~~~~ 190 (512)
+.+..+.+..++.......+..+.|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+.++.++..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 344455555556666666677778876555 899999999999999999999999999999999 99999988877766
Q ss_pred -HHHHHHHHhh-hhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhh-HHHHHhhhhHHhccccC
Q 010350 191 -LATALLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIENLG 267 (512)
Q Consensus 191 -~~~~~~~~~~-~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~g 267 (512)
++.++..... .+.+.+.+..++.|++.+...+....++.|.+|+++|++++|+.+....+ |..++|.+.|++.+..|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 411 (451)
T 1pw4_A 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 411 (451)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4554443222 25567788888999999988888899999999999999999999999999 99999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHhhc
Q 010350 268 WESVFYIFGLLGIAWFSGFKILQ 290 (512)
Q Consensus 268 w~~~f~~~~~~~~~~~~~~~~~~ 290 (512)
|++.|++.+++.++..+..++..
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 412 WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888777666555543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.8e-13 Score=133.11 Aligned_cols=141 Identities=13% Similarity=0.069 Sum_probs=115.8
Q ss_pred CchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchhhHHH
Q 010350 147 NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATD 226 (512)
Q Consensus 147 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 226 (512)
+....++..++..++..++.++.|+++||+|||+++.++.++.+++.++.+ ..++.+.+++..++.+++.+...+....
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-FATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT-TCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345668888888888899999999999999999999988888777665553 3445566777777888877766777788
Q ss_pred HHHhhcCccchhhHHHH-HHhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHh
Q 010350 227 LIARSIPLEERSRAVSF-VFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI 288 (512)
Q Consensus 227 ~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 288 (512)
+++|.+|++.|+.+.++ ++....+|.+++|.++|++.++.|++..|++.+++.++..+..++
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999 588888999999999999999889999999888877766555443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=7.4e-13 Score=132.47 Aligned_cols=160 Identities=16% Similarity=0.108 Sum_probs=126.5
Q ss_pred HHHHHHHHhhhhhhhhhhhh-hcc-cCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHH
Q 010350 121 LAFVICNMDKVNLSVAIIPM-SHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL 198 (512)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~-~~~-~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 198 (512)
+..++.......+..+.|.+ .++ +|.+..+.++..+++.++..++.++.|+++||+|||+++.++.++..++.++..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~- 343 (438)
T 3o7q_A 265 LAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA- 343 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-
Confidence 33344444455555666665 544 599999999999999999999999999999999999999999888877776664
Q ss_pred hhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccC-chHHHHHHHH
Q 010350 199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIFGL 277 (512)
Q Consensus 199 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~~~f~~~~~ 277 (512)
..++... ++..++.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.|++.+..| +++.|++.++
T Consensus 344 ~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 420 (438)
T 3o7q_A 344 FAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPAL 420 (438)
T ss_dssp HCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHH
T ss_pred HcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4444343 44458889999999999999999999855 888888877 667999999999999999999 9999988665
Q ss_pred HHHHHHH
Q 010350 278 LGIAWFS 284 (512)
Q Consensus 278 ~~~~~~~ 284 (512)
..++..+
T Consensus 421 ~~~~~~~ 427 (438)
T 3o7q_A 421 CFAVIFI 427 (438)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.4e-11 Score=121.52 Aligned_cols=181 Identities=11% Similarity=0.017 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT 193 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 193 (512)
+.........+....+...+..+.+.+.+..+.+.........+..+...++.++.+++.||+|||+.++.+....+++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~ 356 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGM 356 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHH
Confidence 44445555555556666777777888888889888888888888888899999999999999999999999888777766
Q ss_pred HHHHHhh----hhHHHHH-HHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhcc----
Q 010350 194 ALLPLLA----GFMPGLV-LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE---- 264 (512)
Q Consensus 194 ~~~~~~~----~~~~~~~-~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---- 264 (512)
+..+... .....++ +..+..+++ ....+..+.+.+|.+|.+.|++++|+......+++++++.+.+.+.+
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~ 435 (491)
T 4gc0_A 357 FSLGTAFYTQAPGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL 435 (491)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543221 1111122 222222333 33446778899999999999999999999999999999988776654
Q ss_pred --ccCchHHHHHHHHHHHHHHH-HHHhhccCCCC
Q 010350 265 --NLGWESVFYIFGLLGIAWFS-GFKILQEGETS 295 (512)
Q Consensus 265 --~~gw~~~f~~~~~~~~~~~~-~~~~~~~~~~~ 295 (512)
..++.+.|++.++++++..+ .++++||++.+
T Consensus 436 ~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 436 VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 34677788888888776654 45677877654
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.4e-11 Score=120.85 Aligned_cols=162 Identities=9% Similarity=-0.037 Sum_probs=132.3
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-----cCCChhhhHHHhhhhHHHHHHHHHHHHHHHhH-HHHcCCCccch
Q 010350 336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE-----LSLNLTEAAWVSILPPLASVLVTSIAAQFADN-LIATGVETTMV 409 (512)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~ 409 (512)
+.++...+..++..+.++....+++.|+++. +|.+..+.+++.+...++..++.++.|+++|| +|+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r------- 85 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR------- 85 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-------
Confidence 4667778888888889999999999999988 89999999999999999999999999999999 8864
Q ss_pred hHHHHHHHhHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcch--hHHHHHHHHhhhchhhhhH
Q 010350 410 RKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEY--ASILLGITNTVGAVPGIVG 487 (512)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~lg~~i~ 487 (512)
..+..+.++..++..+.... .+....++..++.|++.+...+.....+.+.+++++ |+.+.++.+...++|..++
T Consensus 86 --~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 162 (491)
T 4aps_A 86 --PAVFWGGVLIMLGHIVLALP-FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIA 162 (491)
T ss_dssp --HHHHHHHHHHHHHHHHHHSC-CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHH
Confidence 34444444444444444443 344556667778888888888888888888888888 8888998999999999999
Q ss_pred HhhhhhcccccCcceEEEEec
Q 010350 488 VALTGYLLDSTHSWSVSYQCP 508 (512)
Q Consensus 488 p~i~G~l~~~~g~~~~~f~~~ 508 (512)
|.++|.+.+..| |++.|++.
T Consensus 163 ~~~~~~l~~~~g-~~~~f~~~ 182 (491)
T 4aps_A 163 PLIVGAAQEAAG-YHVAFSLA 182 (491)
T ss_dssp HHHHHHHHHHSC-HHHHHHHH
T ss_pred HHHHHHHHhhhh-HHHHHHHH
Confidence 999999999887 88776654
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.1e-11 Score=122.12 Aligned_cols=164 Identities=12% Similarity=0.000 Sum_probs=128.1
Q ss_pred cHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC------CChhhhHHHhhhhHHHHHHHHHHHHHHHhHH-HHcCCCcc
Q 010350 335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELS------LNLTEAAWVSILPPLASVLVTSIAAQFADNL-IATGVETT 407 (512)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~ 407 (512)
++.+|.+.+..++....++....++|.|+++.+| .+..+.+++.+...++..++.++.|+++||+ |+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r----- 85 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY----- 85 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence 4566777888888888999999999999998889 9999999999999999999999999999999 853
Q ss_pred chhHHHHHHHhHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHH---HHhhhchhh
Q 010350 408 MVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGI---TNTVGAVPG 484 (512)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~lg~ 484 (512)
....++.++..++.++......+....++..++.|++.+...+.....+.+.+++++|+++.+. .+...++|.
T Consensus 86 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~ 161 (524)
T 2xut_A 86 ----NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS 161 (524)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433321344556667778888888888888888888999999766665 889999999
Q ss_pred hhHHhhhhhcccccCcceEEEEec
Q 010350 485 IVGVALTGYLLDSTHSWSVSYQCP 508 (512)
Q Consensus 485 ~i~p~i~G~l~~~~g~~~~~f~~~ 508 (512)
+++|.++|.+.+..| |+..|++.
T Consensus 162 ~~g~~~~~~l~~~~g-~~~~f~~~ 184 (524)
T 2xut_A 162 FFASLSMPLLLKNFG-AAVAFGIP 184 (524)
T ss_dssp HHHHHTSTHHHHTSC-HHHHHHHH
T ss_pred HHHHHHHHHHhcccc-HHHHHHHH
Confidence 999999999998877 87766544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.9e-11 Score=115.55 Aligned_cols=160 Identities=13% Similarity=-0.059 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcc-cCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHH-HHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLI-WSL 191 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~-~~~ 191 (512)
+.+....+..++.......+....|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|++. ..+..+ ...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~ 276 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLA 276 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 344445555556666666777778876555 8999999999999999999999999999999998832 223222 222
Q ss_pred HHH--HHHH-hhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccccCc
Q 010350 192 ATA--LLPL-LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW 268 (512)
Q Consensus 192 ~~~--~~~~-~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw 268 (512)
+.. .... ..++.+.+++..++.|++.+...+...+++.|..| ++|+++.|+.+....+|..++|.+.+.+.+..+|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~ 355 (375)
T 2gfp_A 277 GLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQG 355 (375)
T ss_dssp SSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHH
T ss_pred HHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 221 1111 12355667788889999999999999999999998 8999999999999999999999999999888788
Q ss_pred hHHHHHHH
Q 010350 269 ESVFYIFG 276 (512)
Q Consensus 269 ~~~f~~~~ 276 (512)
+..+++.+
T Consensus 356 ~~~~~~~~ 363 (375)
T 2gfp_A 356 SLGLLMTL 363 (375)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 87777643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 512 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 1e-27 | |
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 9e-06 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 1e-09 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 5e-06 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 113 bits (282), Expect = 1e-27
Identities = 62/398 (15%), Positives = 120/398 (30%), Gaps = 10/398 (2%)
Query: 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGW 171
R+++ + + + N ++A+ P G++ G S Y S+ G
Sbjct: 23 RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 81
Query: 172 LAKIFGGRKVLQTGVLIWSLATA---LLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLI 228
++ R L G+++ + +P + + + L G +G+ +
Sbjct: 82 VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 141
Query: 229 ARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI 288
+ER VS + G LL + + F
Sbjct: 142 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 201
Query: 289 LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCG 348
+T L P Y N E + K + + + +K +W + A+
Sbjct: 202 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV 261
Query: 349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTM 408
Y L W PTY E L +++W L A + T + +D + T
Sbjct: 262 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 321
Query: 409 VRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEY 468
V + + + + ++G L G + + +
Sbjct: 322 VFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALEL-----APKKA 376
Query: 469 ASILLGITNTVGAVPG-IVGVALTGYLLDSTHSWSVSY 505
A G T G + G + A+ GY +D
Sbjct: 377 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM 414
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 45.8 bits (107), Expect = 9e-06
Identities = 25/200 (12%), Positives = 51/200 (25%), Gaps = 5/200 (2%)
Query: 87 ESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGW 146
E + + + L + + L + + +
Sbjct: 223 YPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHF 282
Query: 147 NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPG- 205
+ + + L GW++ TGV +L T + G
Sbjct: 283 ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGN 342
Query: 206 ---LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFV-FGGLSFGSVAGLLLAPP 261
++ +++G P + A F G GSVA +
Sbjct: 343 PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 402
Query: 262 IIENLGWESVFYIFGLLGIA 281
++ GW+ F + I
Sbjct: 403 TVDFFGWDGGFMVMIGGSIL 422
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 57.5 bits (137), Expect = 1e-09
Identities = 33/372 (8%), Positives = 81/372 (21%), Gaps = 28/372 (7%)
Query: 133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192
I + + S G++ ++ L Q G L+ G RK L + +
Sbjct: 27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM 86
Query: 193 TALLPLLAGFMPGLVLSRVLV-----GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGG 247
A + V +G + A +
Sbjct: 87 FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMF 146
Query: 248 LSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYI 307
G G + + + G I F + +S
Sbjct: 147 GCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSS------ATVANA 200
Query: 308 NMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEEL 367
+ SL+ E + + + Y F + ++ + +
Sbjct: 201 VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRV 260
Query: 368 SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTL 427
+T + A + + + + + +
Sbjct: 261 FGYVTTMGEL----------------LNASIMFFAPLIINRIGGKNALLLAGTIMSVRII 304
Query: 428 SSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVG-AVPGIV 486
S ++ + + +++ + + + I
Sbjct: 305 GSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF 364
Query: 487 GVALTGYLLDST 498
L G + +S
Sbjct: 365 MSVLAGNMYESI 376
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 46.7 bits (109), Expect = 5e-06
Identities = 22/195 (11%), Positives = 50/195 (25%), Gaps = 2/195 (1%)
Query: 90 QVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSS 149
V P+ + L ++ + +
Sbjct: 200 AVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTR 259
Query: 150 VAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS 209
V G V + A + GG+ L I S+ + ++L
Sbjct: 260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVIL- 318
Query: 210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFG-GLSFGSVAGLLLAPPIIENLGW 268
+ L I + + F + +LA + E++G+
Sbjct: 319 KTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF 378
Query: 269 ESVFYIFGLLGIAWF 283
+ + + GL+ + +
Sbjct: 379 QGAYLVLGLVALGFT 393
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 512 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.94 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.55 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.55 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.6e-37 Score=307.54 Aligned_cols=386 Identities=14% Similarity=0.169 Sum_probs=291.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 191 (512)
||.++..+++.++..++++..++...|.+. |+|+|.+++|++.+++.+++.++++++|+++||+|||+++.++.++.++
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 567777778888888888888998888776 5899999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHhh---hhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhhHHHHHhhhhHHhccc-cC
Q 010350 192 ATALLPLLA---GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LG 267 (512)
Q Consensus 192 ~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~g 267 (512)
+.++.+... ++++.+++.|++.|++.+...+...++++|++|+++|++++++.+.+..+|.+++|.+++.+.+. .+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 181 (447)
T d1pw4a_ 102 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND 181 (447)
T ss_dssp HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCC
T ss_pred HHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhc
Confidence 887765432 45678999999999999999999999999999999999999999999999999999999887664 47
Q ss_pred chHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHHHHH
Q 010350 268 WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFC 347 (512)
Q Consensus 268 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (512)
||+.|++.+++.++..+..+++.+++++.......++......+ ...+..+.+...++..++..++++.++......++
T Consensus 182 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (447)
T d1pw4a_ 182 WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD-DYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVF 260 (447)
T ss_dssp STTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC--------------CCTHHHHHHTSSCHHHHHHHHHHHH
T ss_pred ccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhccc-chhhccccccchhhHHHHHHHcCchHHHHHHHhhh
Confidence 99999999888877666555554443333222211111110000 01111111222233345778899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHHHHHHHH
Q 010350 348 GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTL 427 (512)
Q Consensus 348 ~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (512)
.....+....+.|.|+.+.++++..+.+.......++.+++.++.+++.||+++++ +.............+...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 334 (447)
T d1pw4a_ 261 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN------RGATGVFFMTLVTIATIV 334 (447)
T ss_dssp HHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC------HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccc------cccccchhHHHHHHHHHH
Confidence 99999999999999999989999999999999999999999999999999987642 222222222222223333
Q ss_pred hhccCCCC-hHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHHhhhchh-hhhHHhhhhhcccccCcceEEE
Q 010350 428 SSIDLGLP-HWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVP-GIVGVALTGYLLDSTHSWSVSY 505 (512)
Q Consensus 428 ~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg-~~i~p~i~G~l~~~~g~~~~~f 505 (512)
........ ...++..++.+++.+...+.......+..|++.+|++.|+.+++++++ ..++|.+.|++.|.+| |...|
T Consensus 335 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~ 413 (447)
T d1pw4a_ 335 YWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGF 413 (447)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHH
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHH
Confidence 33322223 333445555666666666666666777889999999999999998885 5668999999999988 55444
Q ss_pred E
Q 010350 506 Q 506 (512)
Q Consensus 506 ~ 506 (512)
+
T Consensus 414 ~ 414 (447)
T d1pw4a_ 414 M 414 (447)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=3.1e-26 Score=224.80 Aligned_cols=370 Identities=12% Similarity=-0.007 Sum_probs=243.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHH
Q 010350 112 RYKLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS 190 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 190 (512)
|++.++.+.+.+++..+....+.+.+|. +.+++|+|..++|++.+++.+++.++++++|+++||+|||++++++..+..
T Consensus 5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~ 84 (417)
T d1pv7a_ 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84 (417)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 3456666777777778888888888887 667799999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHhhhh---HHHHHHHHHHHHhhcccchhhHHHHHHhhcCc--cchhhHHHHHHhhhhhHHHHHhhhhHHhccc
Q 010350 191 LATALLPLLAGF---MPGLVLSRVLVGIGEGVSPSAATDLIARSIPL--EERSRAVSFVFGGLSFGSVAGLLLAPPIIEN 265 (512)
Q Consensus 191 ~~~~~~~~~~~~---~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 265 (512)
++..+....... ....++.+++.+.+.+...........+..++ +++....+........+..++|.+++.+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 164 (417)
T d1pv7a_ 85 VMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI 164 (417)
T ss_dssp HTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc
Confidence 777665433222 12234556666666555555555444444432 3455677778888889999999999988865
Q ss_pred cCchHHHHHHHHHHHHH-HHHHHhhccCCCCCCCCCCcchhhhhhhhhhhhhHHhhcCCCCCccHHHHhhcHhHHHHHHH
Q 010350 266 LGWESVFYIFGLLGIAW-FSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYA 344 (512)
Q Consensus 266 ~gw~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (512)
+|++.++.......+. .+..+..++++.......++++. ++........+..+++..+.....
T Consensus 165 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~ 228 (417)
T d1pv7a_ 165 -NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGAN---------------HSAFSLKLALELFRQPKLWFLSLY 228 (417)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSC---------------CCCCCHHHHHHHTTSSHHHHHHHH
T ss_pred -cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhh---------------cccccccccccccccccccchhhh
Confidence 5555555555554444 44444444433322211111100 011111122344455555544444
Q ss_pred HHHhHHHHHHHHHHHHHHHHH---hcCCChhhhHHHhhhhHHHHHHHHHHHHHHHhHHHHcCCCccchhHHHHHHHhHHH
Q 010350 345 HFCGSWGHYTCLSWLPTYFSE---ELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSP 421 (512)
Q Consensus 345 ~~~~~~~~~~~~~~~p~~l~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 421 (512)
..+............+.+... ..+.+....+.......++..++..+.+++.||.+++ ....++.+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~---------~~~~~~~~~~ 299 (417)
T d1pv7a_ 229 VIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK---------NALLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH---------HHHHHHHHHH
T ss_pred hHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccc---------cchhhhHHHH
Confidence 444444444444444443322 1234455667777888888899999999999998753 3334444444
Q ss_pred HHHHHHhhccCCCChHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcchhHHHHHHHH-hhhchhhhhHHhhhhhcccccCc
Q 010350 422 AVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITN-TVGAVPGIVGVALTGYLLDSTHS 500 (512)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~lg~~i~p~i~G~l~~~~g~ 500 (512)
+++...... ..+....++..++.+++.+...+.......+.+|+++|+++.|+.. ....+|.+++|.+.|++.|..|
T Consensus 300 ~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g- 377 (417)
T d1pv7a_ 300 SVRIIGSSF-ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG- 377 (417)
T ss_dssp HHHHHHHHT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHhhhcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 444444333 2344555566677788888888888888888899999999999865 5567999999999999999988
Q ss_pred ceEEEEec
Q 010350 501 WSVSYQCP 508 (512)
Q Consensus 501 ~~~~f~~~ 508 (512)
++..|++.
T Consensus 378 ~~~~~~~~ 385 (417)
T d1pv7a_ 378 FQGAYLVL 385 (417)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=2.4e-14 Score=141.07 Aligned_cols=176 Identities=15% Similarity=0.057 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhh-hhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHH
Q 010350 114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 192 (512)
+.+..+.+..++..........+.|. +.+.++.+..+.++..++..++..++.++.|++.||++|++..........+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 328 (447)
T d1pw4a_ 249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 328 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHH
Confidence 33444444444444455555555555 66778999999999999999999999999999999999876554443332222
Q ss_pred HHHHHH----hhhhHHHHHHHHHHHHhhcccchhhHHHHHHhhcCccchhhHHHHHHhhhhh-HHHHHhhhhHHhccccC
Q 010350 193 TALLPL----LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIENLG 267 (512)
Q Consensus 193 ~~~~~~----~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~g 267 (512)
...... ...+.+..+++.++.|++.+...+....+..|.+|++.|+.++|+.+....+ |.+++|.+.|++.++.|
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g 408 (447)
T d1pw4a_ 329 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 408 (447)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 222111 1344567777888889998888889999999999999999999999888776 56778999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHhh
Q 010350 268 WESVFYIFGLLGIAWFSGFKIL 289 (512)
Q Consensus 268 w~~~f~~~~~~~~~~~~~~~~~ 289 (512)
|+..|++.++..++..++...+
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 409 WDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998887766655444443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=7.3e-15 Score=142.59 Aligned_cols=158 Identities=12% Similarity=0.032 Sum_probs=133.5
Q ss_pred hhhhhhhhhcccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 010350 133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVL 212 (512)
Q Consensus 133 ~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l 212 (512)
.....+...++.+.+....+...+...++..++.++.+++.||+|+|+.+.++.++.+++.++.. ..++.+.+++..++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 321 (417)
T d1pv7a_ 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-FATSALEVVILKTL 321 (417)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHH
T ss_pred ccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccc-cccccchhhHHHHH
Confidence 33334445555666778888899999999999999999999999999999999998888877764 55666888899999
Q ss_pred HHhhcccchhhHHHHHHhhcCccchhhHHHHH-HhhhhhHHHHHhhhhHHhccccCchHHHHHHHHHHHHHHHHHHhhcc
Q 010350 213 VGIGEGVSPSAATDLIARSIPLEERSRAVSFV-FGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE 291 (512)
Q Consensus 213 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 291 (512)
.|++.+...+...+++.|.+|++.|++..++. +....+|.+++|.++|++.++.||++.|++.+++.++..++..++.+
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 322 HMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999985 45677999999999999999999999999999888776655554443
|