Citrus Sinensis ID: 010358
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 512 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LYR6 | 624 | Probable peptide/nitrate | yes | no | 0.966 | 0.793 | 0.697 | 0.0 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.845 | 0.759 | 0.370 | 2e-95 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.843 | 0.757 | 0.363 | 3e-88 | |
| Q93Z20 | 590 | Probable peptide/nitrate | no | no | 0.884 | 0.767 | 0.359 | 5e-87 | |
| P46032 | 585 | Peptide transporter PTR2 | no | no | 0.849 | 0.743 | 0.357 | 7e-87 | |
| Q84WG0 | 545 | Probable peptide/nitrate | no | no | 0.773 | 0.726 | 0.330 | 4e-73 | |
| Q9FNL7 | 582 | Peptide transporter PTR3- | no | no | 0.863 | 0.759 | 0.306 | 3e-69 | |
| Q9FNL8 | 586 | Peptide transporter PTR3- | no | no | 0.863 | 0.754 | 0.304 | 6e-69 | |
| Q9SZY4 | 577 | Nitrate transporter 1.4 O | no | no | 0.837 | 0.743 | 0.345 | 4e-67 | |
| P0CI03 | 575 | Putative peptide/nitrate | no | no | 0.820 | 0.730 | 0.313 | 2e-65 |
| >sp|Q9LYR6|PTR49_ARATH Probable peptide/nitrate transporter At5g13400 OS=Arabidopsis thaliana GN=At5g13400 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/582 (69%), Positives = 450/582 (77%), Gaps = 87/582 (14%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H++DF LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGH-------- 412
WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+ H
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420
Query: 413 -----------------------------PRGASQLQRVGIGLAVSILSVIWA------- 436
P GASQLQRVGIGLAVSI+SV WA
Sbjct: 421 PVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYR 480
Query: 437 -----------------------------------------GLLEFLYEEAPDAMKSIGS 455
GLLEFLYEEAPDAMKSIGS
Sbjct: 481 RHYAIQNGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 540
Query: 456 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 497
AYAALAGGLGCFAA+ILN+I+K+ T + +WL+QNINT
Sbjct: 541 AYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINT 580
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 349 bits (896), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 197/531 (37%), Positives = 286/531 (53%), Gaps = 98/531 (18%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V++H P A+ KTG W A FI GNE ER+AY+G+ N+V ++ +++ A ++N V
Sbjct: 13 VDIHKNP-ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNV 71
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
N+ G + ++G F+ADAYLGRYWTIA F IY++G+T +TL A++ P N D
Sbjct: 72 TNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNAD- 130
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
+C P S Q + LY+ G GI+PCVSSFGADQFDE ++ K FF
Sbjct: 131 ------TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFF 183
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY S+ VGA++A T++V+IQM GWG FG +AM I+ FF G+ YR + PGGS
Sbjct: 184 NWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGS 243
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
PLTR+ QV+VAAFRK + + L+E S IKGS K+ HTD+ + DKAA+E
Sbjct: 244 PLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFFDKAAVES 302
Query: 352 KEDVINP---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+ D I +PW+LC+VTQVEE+K+++ L+P+ A I+ + ++ T+ V Q TM+
Sbjct: 303 QSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQ 362
Query: 409 HMG--------------------------------------HPRGASQLQRVGIGLAVSI 430
HMG + RG +QLQR+GIGL VSI
Sbjct: 363 HMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSI 422
Query: 431 LSVIWAGL---------------------------------------------LEFLYEE 445
++I AG+ LEF Y++
Sbjct: 423 FAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQ 482
Query: 446 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN 496
APDAM+S+ SA + LG + +++L +++ +T K G+P W+ N+N
Sbjct: 483 APDAMRSLCSALSLTTVALGNYLSTVLVTVVMKIT--KKNGKPGWIPDNLN 531
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 326 bits (835), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 193/531 (36%), Positives = 279/531 (52%), Gaps = 99/531 (18%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
+++H KP A+ +KTG W A FI G E ER+AY+G+S N++ ++ M+ +S +V
Sbjct: 14 LDIHKKP-ANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSV 72
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+N+ G A+ ++G F+ADAYLGRYWTIA F IY+AG+T +T+ A++ P C
Sbjct: 73 SNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT---CS- 128
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
G A + Q + LY+ G GI+PCVSSFGADQFD+ + K FF
Sbjct: 129 -----GETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFF 183
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY + VGA++A +++V+IQM GWG G +AM I+ + FF G+ YR + PGGS
Sbjct: 184 NWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGS 243
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
PLTR+ QV+VA+ RK E + LYE S+I GS K+ HT DKAA+E
Sbjct: 244 PLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFFDKAAVET 302
Query: 352 KED---VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+ D S WKLCTVTQVEE+K L+RL+PI A I+ + ++ T+ V Q T++
Sbjct: 303 ESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQ 362
Query: 409 HM--------------------------------------GHPRGASQLQRVGIGLAVSI 430
HM GH RG +QLQR+GIGL +SI
Sbjct: 363 HMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISI 422
Query: 431 LSVIWAGL---------------------------------------------LEFLYEE 445
S++ AG+ LEF Y++
Sbjct: 423 FSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQ 482
Query: 446 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN 496
APDAM+S+ SA + A G + ++ L +++ VT + G+P W+A+N+N
Sbjct: 483 APDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRS--GGRPGWIAKNLN 531
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (824), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 195/543 (35%), Positives = 285/543 (52%), Gaps = 90/543 (16%)
Query: 33 ESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNM 92
E +N L G+ ++++G P + KTG W A FI GNE ER+AY+G++ N+
Sbjct: 24 EVNNHLTGLSSTAEDGS--IDIYGNPPSK-KKTGNWKACPFILGNECCERLAYYGIAKNL 80
Query: 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152
+T+ +H+S +++ V + G + ++G +AD+Y GRYWTIA F+ IY G+
Sbjct: 81 ITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMAL 140
Query: 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212
+TL A++ V P C PA + Q +T LY+ G GI+PCVSSFG
Sbjct: 141 LTLSASLPVLKPAA----CAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196
Query: 213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272
ADQFD+ + FFN+FY S+ +G+ ++ TL+V++Q GWG F + MG+S
Sbjct: 197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256
Query: 273 NMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 332
FFIGTPLYR + PGGSP+TRV QVLVAA+RK ++ LYE K+S I GS
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNL-PEDISFLYETREKNSMIAGS 315
Query: 333 GKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 388
KI HTD ++ LDKAA+ E K + +PWKLCTVTQVEEVKTL+R+ PI A I+
Sbjct: 316 RKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVY 374
Query: 389 NVILTEFLTLSVQQAYTMNTHM-------------------------------------G 411
+V+ ++ TL VQQ +MN + G
Sbjct: 375 SVLYSQISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTG 434
Query: 412 HPRGASQLQRVGIGLAVSIL----------------------SVIWA------------- 436
P+G + LQR+GIGL +S+L S+ W
Sbjct: 435 IPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQDFVAMSIFWQIPQYILMGIAEVF 494
Query: 437 ---GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 493
G +EF Y+E+PDAM+S+ SA A L +G + +S++ +++ T G+ W+
Sbjct: 495 FFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTA--LGGKDGWVPD 552
Query: 494 NIN 496
++N
Sbjct: 553 DLN 555
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 321 bits (823), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 190/532 (35%), Positives = 279/532 (52%), Gaps = 97/532 (18%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ +G P KTG W A FI GNE ER+AY+G++ N++T++ +H+ ++ V
Sbjct: 30 VDFNGNPPLK-EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+ G + ++G LADAY GRYWTIA F+ IY G++ +TL A++ P + C
Sbjct: 89 TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE--C-- 144
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
I S PA Q + LY+ G GI+PCVSSFGADQFD+ + FF
Sbjct: 145 IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY S+ +GA+V+ +L+V+IQ GWG FG + MG++ FF GTPLYR + PGGS
Sbjct: 202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+TR++QV+VA+FRK + LYE K+SAI GS KI HTDD + LDKAA+
Sbjct: 262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320
Query: 352 KEDVIN---PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+E+ + + W+LCTVTQVEE+K L+R+ PI A I+ + + + T+ VQQ MN
Sbjct: 321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380
Query: 409 HMGH-------------------------------------PRGASQLQRVGIGLAVSIL 431
+G +G +++QR+GIGL VS+L
Sbjct: 381 KIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVL 440
Query: 432 ------------------------------SVIWA----------------GLLEFLYEE 445
SV+W G LEF Y++
Sbjct: 441 CMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQ 500
Query: 446 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 497
+PDAM+S+ SA A L LG + +S++ +++ T + GQ W++ N+N+
Sbjct: 501 SPDAMRSLCSALALLTNALGNYLSSLILTLVTYFT--TRNGQEGWISDNLNS 550
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 276 bits (705), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 175/530 (33%), Positives = 262/530 (49%), Gaps = 134/530 (25%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
+++HG P TG W A FIF NE ER+AY+G++ N++T+ +H++ ++ V
Sbjct: 31 IDIHGNPPLK-QTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHV 89
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+ G + ++G +ADAY GRYWTIA F+ IY G+ +TL A++ P
Sbjct: 90 MTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKP------- 142
Query: 172 ISQLLGS-CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230
++ +GS C PA Q L++ LY+ G GI+PCVSSFGADQFD+ + F
Sbjct: 143 -AECIGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASF 201
Query: 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG 290
FN+FY ++ +GA V+ T++V+IQ +GW F + MG++ M FF GTPLYR + P G
Sbjct: 202 FNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRG 261
Query: 291 SPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALE 350
SP+T V QVLVAA+RK + +VP + S +G
Sbjct: 262 SPITSVCQVLVAAYRKSNL-----------KVP-EDSTDEGDA----------------- 292
Query: 351 LKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 410
N +PWKLCTVTQVEEVK L+RLVPI A I+ +V+ ++ TL VQQ M +
Sbjct: 293 ------NTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTI 346
Query: 411 -------------------------------------GHPRGASQLQRVGIGLAVSILSV 433
G +G ++LQR+GIGL VS+LS+
Sbjct: 347 GLFEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSL 406
Query: 434 IWA----------------------------------------------GLLEFLYEEAP 447
+A G +EF YE++P
Sbjct: 407 TFAAIVETVRLQLARDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSP 466
Query: 448 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL-AQNIN 496
D+M+S+ SA+A L LG + +S++ +++ ++ G+ W+ + NIN
Sbjct: 467 DSMRSLCSAWALLTTTLGNYLSSLIITLVAYLS-----GKDCWIPSDNIN 511
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 263 bits (672), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 166/541 (30%), Positives = 262/541 (48%), Gaps = 99/541 (18%)
Query: 41 LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
+G YT T V++ G P+ S G W A F+ E+ ERMAY+G+S N+ +M +
Sbjct: 6 VGDDYTKDGT-VDLQGNPVRR-SIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKL 63
Query: 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
H+ SSN V N++G S + +LG ++ DA LGRY T I IY +G+ +TL T+
Sbjct: 64 HQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIP 123
Query: 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
P + + + +CE A Q+ + LY G G +P +S+ GADQFD
Sbjct: 124 GIKPPECSTTNVE----NCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFD 179
Query: 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
KT FFN++ S+ G + A T++VY+Q GW +G + + IS +F +GT
Sbjct: 180 PKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGT 239
Query: 281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
P YRH+LP GSP T++A+V+VA+FRK +A + ++ +E+P KG+ I T
Sbjct: 240 PFYRHKLPTGSPFTKMARVIVASFRKANAPM-THDITSFHELPSLEYERKGAFPIHPTPS 298
Query: 341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 400
R LD+A+L+ + W LCT T+VEE K ++R++P+ T + +++L + TL V
Sbjct: 299 LRFLDRASLKTGTN----HKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFV 354
Query: 401 QQAYTMNTHM--------------------------------------GHPRGASQLQRV 422
+Q T++ + G+PRG + LQR+
Sbjct: 355 KQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRM 414
Query: 423 GIGLAVSILSVIWAGL-------------------------------------------- 438
GIGL IL +I A +
Sbjct: 415 GIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFLE 474
Query: 439 ---LEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI 495
LEF Y++AP++MKS+G++Y+ + +G F +S L S + +T +G W+ N+
Sbjct: 475 VAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGRG---WILNNL 531
Query: 496 N 496
N
Sbjct: 532 N 532
|
Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 262 bits (669), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 165/541 (30%), Positives = 267/541 (49%), Gaps = 99/541 (18%)
Query: 41 LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
+G YT T V++ G + S+TG W A F+ E+ ERMAY+G+S N+V +M +
Sbjct: 6 VGDDYTKDGT-VDLRGNRVRR-SQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKL 63
Query: 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
H+ SSN V N++G S + +LG ++ADA+ GRY T I + IYL G+ +TL ++
Sbjct: 64 HQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLP 123
Query: 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
P + + + +CE A Q+ + LY G G +P +S+ GADQFDE
Sbjct: 124 GLKPPKCSTANVE----NCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFD 179
Query: 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
K H FFN++ S+ G A T++VY+Q GW +G + + S +F +GT
Sbjct: 180 PKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGT 239
Query: 281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
LYRH+LP GSP T++A+V+VA+ RK SS YE+P A K + I T
Sbjct: 240 RLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDS-TRFYELPPMEYASKRAFPIHSTSS 298
Query: 341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 400
R L++A+L+ + W+LCT+T+VEE K +++++P+ T + +++L + +TL +
Sbjct: 299 LRFLNRASLKTG----STHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFI 354
Query: 401 QQAYTMNTHM--------------------------------------GHPRGASQLQRV 422
+Q T++ + G+PRG + LQR+
Sbjct: 355 KQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRM 414
Query: 423 GIG----------------------------------LAVSILSV----IWAGL------ 438
GIG + +SI ++ + GL
Sbjct: 415 GIGMILHILIMIIASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAFIE 474
Query: 439 ---LEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI 495
LEF Y++AP++MKS+G++Y + + +G F +SIL S + +T +G W+ N+
Sbjct: 475 IAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQGRG---WIQNNL 531
Query: 496 N 496
N
Sbjct: 532 N 532
|
Peptide transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZY4|PTR27_ARATH Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (653), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 183/530 (34%), Positives = 265/530 (50%), Gaps = 101/530 (19%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ G+P AD SKTGGWI A I G E+ ER++ G++VN+VT++ MH + S+N V
Sbjct: 13 VDYKGRP-ADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIV 71
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+F+G S +LGGFLAD++LGR+ TI IF+TI G + + + P C
Sbjct: 72 TDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRP--PTCHH 129
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
+C PA ++QM LY LY+ G G++ +S FG+DQFD++ K H+ FF
Sbjct: 130 GE----ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N F+ +++G ++A T++VY+Q E G A+G ++M I+ ++F GT YR++ GS
Sbjct: 186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+ ++ QV+ AAFRKR S ++ LYE I +I HTD F LDKAA+
Sbjct: 246 PVVQIFQVIAAAFRKRKMELPQS-IVYLYE--DNPEGI----RIEHTDQFHLLDKAAIVA 298
Query: 352 KED-------VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY 404
+ D V P+PWKL +VT+VEEVK +VRL+PI A TI+ + +T SV+QA
Sbjct: 299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAS 358
Query: 405 TMNTHMGH---PRGA---------------------------------SQLQRVGIGLAV 428
TM ++G P G+ S LQR+ IGL +
Sbjct: 359 TMRRNIGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGKPGFSSLQRIAIGLVL 418
Query: 429 SI-------------LSV-----------------------------IWAGLLEFLYEEA 446
S LSV I+ G L+F ++
Sbjct: 419 STAGMAAAALVEQKRLSVAKSSSQKTLPISVFLLVPQFFLVGAGEAFIYTGQLDFFITQS 478
Query: 447 PDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN 496
P MK++ + LG F +S L SI+K VT WLA NIN
Sbjct: 479 PKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTST--DVGWLADNIN 526
|
Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0CI03|PTR28_ARATH Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (637), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 161/514 (31%), Positives = 257/514 (50%), Gaps = 94/514 (18%)
Query: 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASS 122
++TG W AALFI E +ER++YFGL+ N+V ++ ++++ + VN + G++
Sbjct: 37 ARTGAWRAALFIIAIEFSERLSYFGLATNLVVYLTTILNQDLKMAIRNVNYWSGVTTLMP 96
Query: 123 VLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA 182
+LGGF+ADAYLGRY T+ + TTIYL GL + TM F+P C + EP
Sbjct: 97 LLGGFIADAYLGRYATVLVATTIYLMGL----VLLTMSWFIPGLKPCHQEV----CVEPR 148
Query: 183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242
K+ ++ + + +Y+ G G +P + SFGADQFD+ + + FFN++ +S+ G
Sbjct: 149 KAHEVAF-FIAIYLISIGTGGHKPSLESFGADQFDDDHVEERKMKMSFFNWWNVSLCAGI 207
Query: 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVA 302
+ A T V YI+ GWG A L + M IS ++FFIG P YR+R P GSPLT + QV VA
Sbjct: 208 LTAVTAVAYIEDRVGWGVAGIILTVVMAISLIIFFIGKPFYRYRTPSGSPLTPILQVFVA 267
Query: 303 AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGK-IAHTDDFRCLDKAALELKEDVI---NP 358
A KR+ + S + L+EV SG+ + HT+ + LDKAA+ ++ +
Sbjct: 268 AIAKRNLPYPSDPSL-LHEVSKTEFT---SGRLLCHTEHLKFLDKAAIIEDKNPLALEKQ 323
Query: 359 SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG------- 411
SPW+L T+T+VEE K ++ ++PI T+ + T+ T ++QA TM+ H+G
Sbjct: 324 SPWRLLTLTKVEETKLIINVIPIWFSTLAFGICATQASTFFIKQAITMDRHIGGFTVPPA 383
Query: 412 ------------------------------HPRGASQLQRVGIGLAVSI----------- 430
+ RG + LQR+G G+ S+
Sbjct: 384 SMFTLTALTLIISLTVYEKLLVPLLRSITRNQRGINILQRIGTGMIFSLITMIIAALVEK 443
Query: 431 -----------LSVIW----------------AGLLEFLYEEAPDAMKSIGSAYAALAGG 463
+SVIW GL E+ Y + PD+M+S+G A+ G
Sbjct: 444 QRLDRTNNNKPMSVIWLAPQFMVIGFADAFTLVGLQEYFYHQVPDSMRSLGIAFYLSVIG 503
Query: 464 LGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 497
F ++L + + ++ N +W +++N+
Sbjct: 504 AASFLNNLLITAVDTLAEN--FSGKSWFGKDLNS 535
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 512 | ||||||
| 224053581 | 638 | predicted protein [Populus trichocarpa] | 0.970 | 0.778 | 0.735 | 0.0 | |
| 296085541 | 606 | unnamed protein product [Vitis vinifera] | 0.970 | 0.820 | 0.748 | 0.0 | |
| 225425292 | 640 | PREDICTED: probable peptide/nitrate tran | 0.970 | 0.776 | 0.704 | 0.0 | |
| 449468910 | 637 | PREDICTED: probable peptide/nitrate tran | 0.970 | 0.780 | 0.705 | 0.0 | |
| 356569101 | 631 | PREDICTED: probable peptide/nitrate tran | 0.970 | 0.787 | 0.702 | 0.0 | |
| 357501519 | 638 | Peptide transporter-like protein [Medica | 0.966 | 0.775 | 0.699 | 0.0 | |
| 15240621 | 624 | putative peptide/nitrate transporter [Ar | 0.966 | 0.793 | 0.697 | 0.0 | |
| 297811451 | 625 | proton-dependent oligopeptide transport | 0.966 | 0.792 | 0.701 | 0.0 | |
| 147771745 | 612 | hypothetical protein VITISV_040927 [Viti | 0.951 | 0.795 | 0.687 | 0.0 | |
| 147866216 | 626 | hypothetical protein VITISV_008303 [Viti | 0.957 | 0.782 | 0.687 | 0.0 |
| >gi|224053581|ref|XP_002297883.1| predicted protein [Populus trichocarpa] gi|222845141|gb|EEE82688.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/586 (73%), Positives = 467/586 (79%), Gaps = 89/586 (15%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
MGS EIKSPE L ETPAT S+ KKL +YF+ESDNRRMA GRGYTGGTTPV++HG
Sbjct: 1 MGSGEIKSPEGLPETPATYDGVSNPIHSKKLGIYFLESDNRRMAFGRGYTGGTTPVDIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMV FMFY+MH+ F SSNAVNNFLG
Sbjct: 61 KPIPDLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVAFMFYIMHRPFTSSSNAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQ SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +FMP+Q CD++S LL
Sbjct: 121 ISQVSSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFMPDQGQCDQLSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
G+CEPAKSWQMLYL TVLY+TGFGAAGIRPCVSSFGADQFDER ++YK+HLDRFFNFFYL
Sbjct: 181 GNCEPAKSWQMLYLNTVLYVTGFGAAGIRPCVSSFGADQFDERGENYKSHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFTLVVYIQM+HGWGSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTLVVYIQMKHGWGSAFGSLAIAMGMSNMLFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAF+KR A+FSSSELIGLYEVPGK SAIKGSGKIAHTDDFRCLDKAAL+LKED +
Sbjct: 301 AQVLVAAFQKRKASFSSSELIGLYEVPGKRSAIKGSGKIAHTDDFRCLDKAALQLKEDGV 360
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM------ 410
+PSPW+LCTVTQVEEVK L++LVPIPACTIMLN+ILTE+LTLSVQQAYT+NTH+
Sbjct: 361 DPSPWRLCTVTQVEEVKILIKLVPIPACTIMLNLILTEYLTLSVQQAYTLNTHLGHLKLP 420
Query: 411 -------------------------------GHPRGASQLQRVGIGLAVSILSVIWA--- 436
GHPRGASQLQRVGIGLA SILSV WA
Sbjct: 421 VTSMPVFPCLSIFLILSLYYSVFVPIFRRITGHPRGASQLQRVGIGLAFSILSVAWAAIF 480
Query: 437 ---------------------------------------------GLLEFLYEEAPDAMK 451
GLLEFLYEEAPDAMK
Sbjct: 481 ERYRRKYAIEHGYEFSFLTPMPNLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 540
Query: 452 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 497
SIGSAYAALAGG+GCFAASILNSI+KSVTGNP K Q +WL+QNINT
Sbjct: 541 SIGSAYAALAGGIGCFAASILNSIVKSVTGNPDKRQQSWLSQNINT 586
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085541|emb|CBI29273.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 848 bits (2190), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/552 (74%), Positives = 457/552 (82%), Gaps = 55/552 (9%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 360
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM------ 410
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+
Sbjct: 361 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 420
Query: 411 -------------------------------GHPRGASQLQRVGIGLAVSILSVIWA--- 436
GHP GASQLQRVGIGLAVSILSV WA
Sbjct: 421 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGYC 480
Query: 437 -----------GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKK 485
GLLEFLYEEAPDAM+SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++
Sbjct: 481 LIGIAEVFCIVGLLEFLYEEAPDAMRSIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQ 540
Query: 486 GQPNWLAQNINT 497
P+WL+QNINT
Sbjct: 541 MHPSWLSQNINT 552
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425292|ref|XP_002272176.1| PREDICTED: probable peptide/nitrate transporter At5g13400 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/586 (70%), Positives = 457/586 (77%), Gaps = 89/586 (15%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 360
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM------ 410
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+
Sbjct: 361 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 420
Query: 411 -------------------------------GHPRGASQLQRVGIGLAVSILSVIWA--- 436
GHP GASQLQRVGIGLAVSILSV WA
Sbjct: 421 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 480
Query: 437 ---------------------------------------------GLLEFLYEEAPDAMK 451
GLLEFLYEEAPDAM+
Sbjct: 481 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 540
Query: 452 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 497
SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++ P+WL+QNINT
Sbjct: 541 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINT 586
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468910|ref|XP_004152164.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] gi|449528581|ref|XP_004171282.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/588 (70%), Positives = 455/588 (77%), Gaps = 91/588 (15%)
Query: 1 MGSREIKSPESLQETPAT------SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNV 54
MGSREIKS + ETP S S QRKKL ++FIESD+RR A GRGYTGGTTPVN+
Sbjct: 1 MGSREIKSLHEVNETPVLGRLDEHSESFQRKKLGMFFIESDDRRTAFGRGYTGGTTPVNI 60
Query: 55 HGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF 114
GKPIADLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH F SS+AVNNF
Sbjct: 61 RGKPIADLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHMPFTTSSDAVNNF 120
Query: 115 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 174
LGISQASSVLGGFLADAYLGRYWTIAIFTTIYL GL GITLCAT+ F+PNQ CD++S
Sbjct: 121 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLGGLVGITLCATISTFVPNQAKCDQLSL 180
Query: 175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234
LLG CEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDE+SKDYK+HLDRFFNFF
Sbjct: 181 LLGRCEPAKPWQMTYLYTVLYLTGFGAAGIRPCVSSFGADQFDEKSKDYKSHLDRFFNFF 240
Query: 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLT 294
YLSVTVGAI+AFT VVYIQ++HGWG+AFG+LAIAMG SN++FF+GTPLYRHRLPGGSPLT
Sbjct: 241 YLSVTVGAIIAFTAVVYIQIKHGWGAAFGSLAIAMGFSNVVFFLGTPLYRHRLPGGSPLT 300
Query: 295 RVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED 354
RVAQVLVAA+RKR+A+FS+SE +GL+EVPGK SAIKGSGKI HTDDFRCLDKAAL+LKED
Sbjct: 301 RVAQVLVAAYRKRNASFSNSEFVGLFEVPGKQSAIKGSGKILHTDDFRCLDKAALQLKED 360
Query: 355 VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM---- 410
NPSPWKLCTVTQVEEVK L++L+PIPACTIMLN++LTE+LTLSVQQAYTMNTH+
Sbjct: 361 GGNPSPWKLCTVTQVEEVKILLKLIPIPACTIMLNLVLTEYLTLSVQQAYTMNTHIGRLK 420
Query: 411 ---------------------------------GHPRGASQLQRVGIGLAVSILSVIWA- 436
GHP GASQLQRVGIGLA+SILSV WA
Sbjct: 421 LPVTCMPVFPGLSIFLILSLYYSVFVPLSRRITGHPHGASQLQRVGIGLAISILSVAWAG 480
Query: 437 -----------------------------------------------GLLEFLYEEAPDA 449
GLLEFLYEEAPDA
Sbjct: 481 AFERYRRNFAIRSGYEASFLSPMPNLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA 540
Query: 450 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 497
MKSIGSAYAALAGGLGCFAAS+LNSIIKSVTG+P P+WL+QNINT
Sbjct: 541 MKSIGSAYAALAGGLGCFAASLLNSIIKSVTGSPNGRNPSWLSQNINT 588
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569101|ref|XP_003552744.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 822 bits (2124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/582 (70%), Positives = 449/582 (77%), Gaps = 85/582 (14%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M S EIKSP + +S +RKKL++YFIES++RRMA GRGYT G+TPV++HGK I
Sbjct: 1 MDSSEIKSPAEGSQQGTPGNSLRRKKLAIYFIESEDRRMAFGRGYTAGSTPVDIHGKSIV 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
DLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 DLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFTSSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT+ F+PNQ+ CD+ S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATISKFVPNQEECDQFSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AK WQM YLYT LYIT FGAAGIRPCVSSFGADQFDERSK+YK HLDRFFN FYLSVT+
Sbjct: 181 AAKPWQMTYLYTALYITAFGAAGIRPCVSSFGADQFDERSKNYKAHLDRFFNIFYLSVTI 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAIVAFT+VVY+QM+ GWGSAFG+LAIAMGISNM+FFIGTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIVAFTVVVYVQMKFGWGSAFGSLAIAMGISNMVFFIGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+A+F SSE IGLYEVPG+ SAIKGS KI+HTDDFR LDKAAL+LKED NPSP
Sbjct: 301 VAAFRKRNASFGSSEFIGLYEVPGRQSAIKGSRKISHTDDFRFLDKAALQLKEDGANPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM---------- 410
W+LCTVTQVEEVK L++L+PIPACTIMLNV+LTEFLTLSVQQAYT+NTH+
Sbjct: 361 WRLCTVTQVEEVKILMKLIPIPACTIMLNVVLTEFLTLSVQQAYTLNTHLGRLKLPVTCM 420
Query: 411 ---------------------------GHPRGASQLQRVGIGLAVSILSVIWA------- 436
GHP GASQLQRVGIGLAVSILSV WA
Sbjct: 421 PVFPGLSVFLILSLYYSIFVPVFRRITGHPHGASQLQRVGIGLAVSILSVAWAAIFERYR 480
Query: 437 -----------------------------------------GLLEFLYEEAPDAMKSIGS 455
GLLEFLYEEAPDAMKSIGS
Sbjct: 481 RNYAIKHGYLASFLTAMPNLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIGS 540
Query: 456 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 497
AYAALAGGLGCF A+I+N+IIKS TGN KGQP+WL+QNINT
Sbjct: 541 AYAALAGGLGCFVATIINNIIKSATGNLDKGQPSWLSQNINT 582
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357501519|ref|XP_003621048.1| Peptide transporter-like protein [Medicago truncatula] gi|355496063|gb|AES77266.1| Peptide transporter-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/583 (69%), Positives = 453/583 (77%), Gaps = 88/583 (15%)
Query: 1 MGSREIKSPESLQE-TPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPI 59
M + EIKSPE+ Q+ TP TS S RKKL ++FIES++RRMALGRGYT G+TPVN+HGK I
Sbjct: 1 MDTCEIKSPEAPQQGTPCTSMS--RKKLGIFFIESEDRRMALGRGYTRGSTPVNIHGKSI 58
Query: 60 ADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQ 119
DLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ FA SSNAVNNFLGISQ
Sbjct: 59 EDLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFASSSNAVNNFLGISQ 118
Query: 120 ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 179
ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT+CATM +F+PNQ+NCD++S LLG+C
Sbjct: 119 ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITICATMSIFVPNQENCDQLSLLLGNC 178
Query: 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239
EPAK WQM YLYTVLYIT FGAAGIRPCVSSFGADQFDERSK+YK+HLDRFFN FYLSVT
Sbjct: 179 EPAKPWQMTYLYTVLYITAFGAAGIRPCVSSFGADQFDERSKNYKSHLDRFFNLFYLSVT 238
Query: 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299
+GAI+AFT VVY+QM+ GWGSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRVAQV
Sbjct: 239 IGAIIAFTAVVYVQMKLGWGSAFGSLAIAMGVSNMLFFIGTPLYRHRLPGGSPLTRVAQV 298
Query: 300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS 359
LVAA+RKR +F +SE++GLYEVPG+ SAIKGS KIAHTDDFR LDKAAL+LK+D NPS
Sbjct: 299 LVAAYRKRKESFGNSEVVGLYEVPGRRSAIKGSQKIAHTDDFRFLDKAALQLKQDGPNPS 358
Query: 360 PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM--------- 410
W LCTVTQVEEVK L++L+PIPACTIMLNVILTEFLTLSVQQAYT+NTH+
Sbjct: 359 QWNLCTVTQVEEVKILIKLIPIPACTIMLNVILTEFLTLSVQQAYTLNTHLGKLKLPVTC 418
Query: 411 ----------------------------GHPRGASQLQRVGIGLAVSILSVIWA------ 436
GHP GASQLQR+GIGL VSILSV WA
Sbjct: 419 MPVFPGLSVFLILALYYQTFVPLFKRITGHPHGASQLQRIGIGLGVSILSVAWAAIFEKY 478
Query: 437 ------------------------------------------GLLEFLYEEAPDAMKSIG 454
GLLEFLYEEAPDAMKSIG
Sbjct: 479 RRNYAIKNEFEASFLTPMPNLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIG 538
Query: 455 SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 497
SAYAALAGGLGCF A+ +NS++KS TGN K Q +WL+QNINT
Sbjct: 539 SAYAALAGGLGCFFATFINSVVKSATGNSDKRQESWLSQNINT 581
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240621|ref|NP_196844.1| putative peptide/nitrate transporter [Arabidopsis thaliana] gi|75335666|sp|Q9LYR6.1|PTR49_ARATH RecName: Full=Probable peptide/nitrate transporter At5g13400 gi|7543907|emb|CAB87147.1| peptide transporter-like protein [Arabidopsis thaliana] gi|18252225|gb|AAL61945.1| peptide transporter-like protein [Arabidopsis thaliana] gi|22136152|gb|AAM91154.1| peptide transporter-like protein [Arabidopsis thaliana] gi|332004507|gb|AED91890.1| putative peptide/nitrate transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/582 (69%), Positives = 450/582 (77%), Gaps = 87/582 (14%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H++DF LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGH-------- 412
WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+ H
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420
Query: 413 -----------------------------PRGASQLQRVGIGLAVSILSVIWA------- 436
P GASQLQRVGIGLAVSI+SV WA
Sbjct: 421 PVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYR 480
Query: 437 -----------------------------------------GLLEFLYEEAPDAMKSIGS 455
GLLEFLYEEAPDAMKSIGS
Sbjct: 481 RHYAIQNGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 540
Query: 456 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 497
AYAALAGGLGCFAA+ILN+I+K+ T + +WL+QNINT
Sbjct: 541 AYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINT 580
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811451|ref|XP_002873609.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297319446|gb|EFH49868.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/583 (70%), Positives = 454/583 (77%), Gaps = 88/583 (15%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAALFIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLA-GLTGITLCATMKVFMPNQDNCDRISQLLGSC 179
SSVLGGFLADAYLGRYWTIAIFTT+YL L GITL A++K+F+P+Q NC ++S LLG+C
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVVSLIGITLGASLKMFVPDQSNCGQLSLLLGNC 180
Query: 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239
EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT
Sbjct: 181 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVT 240
Query: 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299
+GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQV
Sbjct: 241 LGAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQV 300
Query: 300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS 359
LVAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H+DDF LDKAAL+LKED + PS
Sbjct: 301 LVAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSDDFIWLDKAALQLKEDGLEPS 360
Query: 360 PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGH------- 412
PWKLCTVTQVEEVK L+RL+PIPACTIML+++LTE+LTLSVQQAYT+NTH+ H
Sbjct: 361 PWKLCTVTQVEEVKILIRLIPIPACTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTC 420
Query: 413 ------------------------------PRGASQLQRVGIGLAVSILSVIWA------ 436
P GASQLQRVGIGLAVSI+SV WA
Sbjct: 421 MPVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENY 480
Query: 437 ------------------------------------------GLLEFLYEEAPDAMKSIG 454
GLLEFLYEEAPDAMKSIG
Sbjct: 481 RRHYAIQHGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG 540
Query: 455 SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 497
SAYAALAGGLGCFAA+ILN+I+K+ T + G+ +WL+QNINT
Sbjct: 541 SAYAALAGGLGCFAATILNNIVKAATRD-SDGK-SWLSQNINT 581
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147771745|emb|CAN78165.1| hypothetical protein VITISV_040927 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/586 (68%), Positives = 447/586 (76%), Gaps = 99/586 (16%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFR +D
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFR----------KDGA 350
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM------ 410
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+
Sbjct: 351 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 410
Query: 411 -------------------------------GHPRGASQLQRVGIGLAVSILSVIWA--- 436
GHP GASQLQRVGIGLAVSILSV WA
Sbjct: 411 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 470
Query: 437 ---------------------------------------------GLLEFLYEEAPDAMK 451
GLLEFLYEEAPDAM+
Sbjct: 471 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 530
Query: 452 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 497
SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++ P+WL+QNINT
Sbjct: 531 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINT 576
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147866216|emb|CAN84143.1| hypothetical protein VITISV_008303 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/586 (68%), Positives = 447/586 (76%), Gaps = 96/586 (16%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DL K + GNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLFKD-------WRLGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 113
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 114 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 173
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 174 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 233
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 234 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 293
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED
Sbjct: 294 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 353
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM------ 410
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+
Sbjct: 354 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 413
Query: 411 -------------------------------GHPRGASQLQRVGIGLAVSILSVIWA--- 436
GHP GASQLQRVGIGLAVSILSV WA
Sbjct: 414 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 473
Query: 437 ---------------------------------------------GLLEFLYEEAPDAMK 451
GLLEFLYEEAPDAM+
Sbjct: 474 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 533
Query: 452 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 497
SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++ P+WL+QNINT
Sbjct: 534 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINT 579
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 512 | ||||||
| TAIR|locus:2181655 | 624 | AT5G13400 [Arabidopsis thalian | 0.851 | 0.698 | 0.789 | 9.6e-198 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.695 | 0.624 | 0.437 | 7e-95 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.748 | 0.671 | 0.403 | 1.8e-90 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.716 | 0.622 | 0.430 | 4.2e-89 | |
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.734 | 0.642 | 0.408 | 3.2e-87 | |
| TAIR|locus:2043803 | 577 | AT2G26690 [Arabidopsis thalian | 0.675 | 0.599 | 0.411 | 1.6e-71 | |
| TAIR|locus:2033776 | 614 | NRT1.5 "nitrate transporter 1. | 0.722 | 0.602 | 0.352 | 9.5e-69 | |
| TAIR|locus:2008855 | 590 | NRT1.1 "nitrate transporter 1. | 0.681 | 0.591 | 0.396 | 4.7e-68 | |
| TAIR|locus:2084500 | 602 | AT3G53960 [Arabidopsis thalian | 0.654 | 0.556 | 0.376 | 3.5e-67 | |
| TAIR|locus:2161428 | 586 | AT5G46040 [Arabidopsis thalian | 0.701 | 0.612 | 0.351 | 6.8e-67 |
| TAIR|locus:2181655 AT5G13400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1795 (636.9 bits), Expect = 9.6e-198, Sum P(2) = 9.6e-198
Identities = 345/437 (78%), Positives = 387/437 (88%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H++DF LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQ 420
WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+ H +
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420
Query: 421 RVGIGLAVS-ILSVIWA 436
V GL++ ILS+ ++
Sbjct: 421 PVFPGLSIFLILSLYYS 437
|
|
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 786 (281.7 bits), Expect = 7.0e-95, Sum P(3) = 7.0e-95
Identities = 162/370 (43%), Positives = 229/370 (61%)
Query: 45 YTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF 104
YT T V++H P A+ KTG W A FI GNE ER+AY+G+ N+V ++ +++
Sbjct: 7 YTQDGT-VDIHKNP-ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGN 64
Query: 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164
A ++N V N+ G + ++G F+ADAYLGRYWTIA F IY++G+T +TL A++ P
Sbjct: 65 ATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKP 124
Query: 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224
N D +C P S Q + LY+ G GI+PCVSSFGADQFDE ++ K
Sbjct: 125 GNCNAD-------TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEK 176
Query: 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284
FFN+FY S+ VGA++A T++V+IQM GWG FG +AM I+ FF G+ YR
Sbjct: 177 IKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYR 236
Query: 285 HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 344
+ PGGSPLTR+ QV+VAAFRK + + L+E S IKGS K+ HTD+ +
Sbjct: 237 LQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFF 295
Query: 345 DKAALELKEDVINP---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQ 401
DKAA+E + D I +PW+LC+VTQVEE+K+++ L+P+ A I+ + ++ T+ V
Sbjct: 296 DKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVL 355
Query: 402 QAYTMNTHMG 411
Q TM+ HMG
Sbjct: 356 QGNTMDQHMG 365
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 731 (262.4 bits), Expect = 1.8e-90, Sum P(3) = 1.8e-90
Identities = 162/401 (40%), Positives = 235/401 (58%)
Query: 45 YTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF 104
YT T +++H KP A+ +KTG W A FI G E ER+AY+G+S N++ ++ M+
Sbjct: 8 YTKDGT-LDIHKKP-ANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMEN 65
Query: 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164
+S +V+N+ G A+ ++G F+ADAYLGRYWTIA F IY+AG+T +T+ A++ P
Sbjct: 66 VSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTP 125
Query: 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224
C +C A + Q + LY+ G GI+PCVSSFGADQFD+ + K
Sbjct: 126 T---CSG-----ETCH-ATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEK 176
Query: 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284
FFN+FY + VGA++A +++V+IQM GWG G +AM I+ + FF G+ YR
Sbjct: 177 ESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYR 236
Query: 285 HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 344
+ PGGSPLTR+ QV+VA+ RK E + LYE S+I GS K+ HT
Sbjct: 237 LQKPGGSPLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFF 295
Query: 345 DKAALELKED---VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQ 401
DKAA+E + D S WKLCTVTQVEE+K L+RL+PI A I+ + ++ T+ V
Sbjct: 296 DKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVL 355
Query: 402 QAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGLLEFL 442
Q T++ HMG P ++ + L ++ + WA + + L
Sbjct: 356 QGNTLDQHMG-PN--FKIPSASLSLFDTLSVLFWAPVYDKL 393
|
|
| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 767 (275.1 bits), Expect = 4.2e-89, Sum P(3) = 4.2e-89
Identities = 163/379 (43%), Positives = 230/379 (60%)
Query: 33 ESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNM 92
E N + G T ++++G P + KTG W A FI GNE ER+AY+G++ N+
Sbjct: 23 EEVNNHLT-GLSSTAEDGSIDIYGNPPSK-KKTGNWKACPFILGNECCERLAYYGIAKNL 80
Query: 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152
+T+ +H+S +++ V + G + ++G +AD+Y GRYWTIA F+ IY G+
Sbjct: 81 ITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMAL 140
Query: 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212
+TL A++ V P C ++ L C PA + Q +T LY+ G GI+PCVSSFG
Sbjct: 141 LTLSASLPVLKPAA--CAGVAAAL--CSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196
Query: 213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272
ADQFD+ + FFN+FY S+ +G+ ++ TL+V++Q GWG F + MG+S
Sbjct: 197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256
Query: 273 NMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 332
FFIGTPLYR + PGGSP+TRV QVLVAA+RK ++ LYE K+S I GS
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPE-DISFLYETREKNSMIAGS 315
Query: 333 GKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 388
KI HTD ++ LDKAA+ E K + +PWKLCTVTQVEEVKTL+R+ PI A I+
Sbjct: 316 RKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVY 374
Query: 389 NVILTEFLTLSVQQAYTMN 407
+V+ ++ TL VQQ +MN
Sbjct: 375 SVLYSQISTLFVQQGRSMN 393
|
|
| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 750 (269.1 bits), Expect = 3.2e-87, Sum P(3) = 3.2e-87
Identities = 160/392 (40%), Positives = 230/392 (58%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ +G P KTG W A FI GNE ER+AY+G++ N++T++ +H+ ++ V
Sbjct: 30 VDFNGNPPLK-EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+ G + ++G LADAY GRYWTIA F+ IY G++ +TL A++ P + C
Sbjct: 89 TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE--C-- 144
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
I S PA Q + LY+ G GI+PCVSSFGADQFD+ + FF
Sbjct: 145 IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY S+ +GA+V+ +L+V+IQ GWG FG + MG++ FF GTPLYR + PGGS
Sbjct: 202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+TR++QV+VA+FRK + LYE K+SAI GS KI HTDD + LDKAA+
Sbjct: 262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320
Query: 352 KEDVIN---PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+E+ + + W+LCTVTQVEE+K L+R+ PI A I+ + + + T+ VQQ MN
Sbjct: 321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380
Query: 409 HMGHPRGASQLQRVGIGLAVSILSVIWAGLLE 440
+G + QL +G + +IW L +
Sbjct: 381 KIG----SFQLPPAALGTFDTASVIIWVPLYD 408
|
|
| TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 666 (239.5 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 151/367 (41%), Positives = 219/367 (59%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ G+P AD SKTGGWI A I G E+ ER++ G++VN+VT++ MH + S+N V
Sbjct: 13 VDYKGRP-ADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIV 71
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+F+G S +LGGFLAD++LGR+ TI IF+TI G TG AT K+ C
Sbjct: 72 TDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALG-TGALAVAT-KLPELRPPTCHH 129
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
+C PA ++QM LY LY+ G G++ +S FG+DQFD++ K H+ FF
Sbjct: 130 GE----ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N F+ +++G ++A T++VY+Q E G A+G ++M I+ ++F GT YR++ GS
Sbjct: 186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+ ++ QV+ AAFRKR S ++ LYE I+ I HTD F LDKAA+
Sbjct: 246 PVVQIFQVIAAAFRKRKMELPQS-IVYLYE--DNPEGIR----IEHTDQFHLLDKAAIVA 298
Query: 352 KED-------VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY 404
+ D V P+PWKL +VT+VEEVK +VRL+PI A TI+ + +T SV+QA
Sbjct: 299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAS 358
Query: 405 TMNTHMG 411
TM ++G
Sbjct: 359 TMRRNIG 365
|
|
| TAIR|locus:2033776 NRT1.5 "nitrate transporter 1.5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 588 (212.0 bits), Expect = 9.5e-69, Sum P(3) = 9.5e-69
Identities = 138/392 (35%), Positives = 221/392 (56%)
Query: 27 LSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYF 86
L +Y D + G T T V+ +G+P + S +G W+A + I N+ +A+F
Sbjct: 4 LEIY--NKDTMKKKEGEEETRDGT-VDYYGRP-SIRSNSGQWVAGIVILLNQGLATLAFF 59
Query: 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146
G+ VN+V F+ V+ ++ AD++N V+ + G S++G FL+D+Y GRY T AIF I+
Sbjct: 60 GVGVNLVLFLTRVLQQNNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIF 119
Query: 147 LAGLTGITLCATMKVFMPNQDNC-DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIR 205
+ GL+ ++L + M + P C D ++ C ++ Y +Y+ G G +
Sbjct: 120 VIGLSSLSLSSYMFLIRPR--GCGDEVTP----CGSHSMMEITMFYFSIYLIALGYGGYQ 173
Query: 206 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 265
P +++ GADQFDE FF++FYL++ +G++ + T++ Y + E W F A
Sbjct: 174 PNIATLGADQFDEEHPKEGYSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWAS 233
Query: 266 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR--HAAFSSSELIGLYEVP 323
+ I +LF +GTP YR+ P G+PL+R QVLVAA +K A E + +
Sbjct: 234 TGSAIIGLILFLVGTPRYRYFKPTGNPLSRFCQVLVAATKKSSVEAPLRGREEMYDGDSE 293
Query: 324 GKHSAIKGSGKIAHTDDFRCLDKAAL-------ELKEDVINPSPWKLCTVTQVEEVKTLV 376
GK++++ +I HTD+F+ LDKAA + K+D +NP W+LC VTQVEEVK ++
Sbjct: 294 GKNASVNTGRRIVHTDEFKFLDKAAYITARDLDDKKQDSVNP--WRLCPVTQVEEVKCIL 351
Query: 377 RLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
RL+PI CTI+ +V+ T+ +L V+Q MNT
Sbjct: 352 RLMPIWLCTIIYSVVFTQMASLFVEQGAAMNT 383
|
|
| TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 632 (227.5 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 144/363 (39%), Positives = 209/363 (57%)
Query: 56 GKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL 115
G+P AD SKTGGW +A I E ER+ G+ VN+VT++ MH A ++N V NFL
Sbjct: 20 GRP-ADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFL 78
Query: 116 GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175
G S +LGGF+AD +LGRY TIAIF I G++ +TL + P + N S
Sbjct: 79 GTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSH- 137
Query: 176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235
CE A Q+ LY LY+T G G++ VS FG+DQFDE ++ + FFN F+
Sbjct: 138 ---CEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFF 194
Query: 236 LSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPL 293
+ VG+++A T++VY+Q + G WG A AI + +S +F GT YR + GSP+
Sbjct: 195 FCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALS--VFLAGTNRYRFKKLIGSPM 252
Query: 294 TRVAQVLVAAFRKRHAAFSS--SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
T+VA V+VAA+R R + S L + ++ ++KG K+ HT+ FR LDKAA+
Sbjct: 253 TQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAIRD 312
Query: 352 KEDVINPS---PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+E + + W L T+T VEEVK +VR++PI A I+ + + TLSV Q+ T++
Sbjct: 313 QEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDR 372
Query: 409 HMG 411
+G
Sbjct: 373 SIG 375
|
|
| TAIR|locus:2084500 AT3G53960 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 579 (208.9 bits), Expect = 3.5e-67, Sum P(3) = 3.5e-67
Identities = 133/353 (37%), Positives = 203/353 (57%)
Query: 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASS 122
++TG W AALFI G E +ER++YFG+S N+V ++ ++H+ + N + G++
Sbjct: 36 AQTGAWRAALFIIGIEFSERLSYFGISTNLVVYLTTILHQDLKMAVKNTNYWSGVTTLMP 95
Query: 123 VLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC-EP 181
+LGGF+ADAYLGRY T+ + TTIYL GL I L T+ F+P C C EP
Sbjct: 96 LLGGFVADAYLGRYGTVLLATTIYLMGL--ILL--TLSWFIPGLKACHE-----DMCVEP 146
Query: 182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 241
K+ ++ + + +Y+ G G +P + SFGADQF++ + + +FN++ + G
Sbjct: 147 RKAHEIAF-FIAIYLISIGTGGHKPSLESFGADQFEDGHPEERKMKMSYFNWWNAGLCAG 205
Query: 242 AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLV 301
+ A T++VYI+ GWG A L I M S +F IG P YR+R P GSPLT + QV V
Sbjct: 206 ILTAVTVIVYIEDRIGWGVASIILTIVMATSFFIFRIGKPFYRYRAPSGSPLTPMLQVFV 265
Query: 302 AAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAAL--ELKEDVI--N 357
AA KR+ S + L+E+ + KG ++ + + + LDKAA+ + E+
Sbjct: 266 AAIAKRNLPCPSDSSL-LHELTNEEYT-KGR-LLSSSKNLKFLDKAAVIEDRNENTKAEK 322
Query: 358 PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 410
SPW+L TVT+VEEVK L+ ++PI T+ V T+ TL ++QA M+ H+
Sbjct: 323 QSPWRLATVTKVEEVKLLINMIPIWFFTLAFGVCATQSSTLFIKQAIIMDRHI 375
|
|
| TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 601 (216.6 bits), Expect = 6.8e-67, Sum P(2) = 6.8e-67
Identities = 130/370 (35%), Positives = 208/370 (56%)
Query: 41 LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
+G YT T V++ G + S+TG W A F+ E+ ERMAY+G+S N+V +M +
Sbjct: 6 VGDDYTKDGT-VDLRGNRVRR-SQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKL 63
Query: 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
H+ SSN V N++G S + +LG ++ADA+ GRY T I + IYL G+ +TL ++
Sbjct: 64 HQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLP 123
Query: 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
P + C + + +CE A Q+ + LY G G +P +S+ GADQFDE
Sbjct: 124 GLKPPK--CSTAN--VENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFD 179
Query: 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
K H FFN++ S+ G A T++VY+Q GW +G + + S +F +GT
Sbjct: 180 PKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGT 239
Query: 281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
LYRH+LP GSP T++A+V+VA+ RK SS YE+P A K + I T
Sbjct: 240 RLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDST-RFYELPPMEYASKRAFPIHSTSS 298
Query: 341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 400
R L++A+L+ + W+LCT+T+VEE K +++++P+ T + +++L + +TL +
Sbjct: 299 LRFLNRASLKTG----STHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFI 354
Query: 401 QQAYTMNTHM 410
+Q T++ +
Sbjct: 355 KQGTTLDRRL 364
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LYR6 | PTR49_ARATH | No assigned EC number | 0.6975 | 0.9667 | 0.7932 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.I.7989.1 | hypothetical protein (618 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 512 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 7e-44 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 6e-18 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 2e-15 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-06 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 3e-06 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-04 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 7e-44
Identities = 79/313 (25%), Positives = 133/313 (42%), Gaps = 40/313 (12%)
Query: 136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLY 195
+ TI + + IY G +TL A P Q + Y LY
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSPVQ--------------------VALFYIGLY 40
Query: 196 ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 255
+ G GI+P VS+FGADQFDE + D FF++FY S+ G+++A + Y+Q
Sbjct: 41 LIALGTGGIKPNVSAFGADQFDETQDPRR---DGFFSWFYFSINAGSLIATIITPYLQQN 97
Query: 256 HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLTR-VAQVLVAAFRKRHAAFSS 313
G+ FG A+ M ++ ++F +G+ Y+ + P GGSP T +A ++ AA + R
Sbjct: 98 VGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPK 157
Query: 314 SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVK 373
LY K++ S HT A + + V ++
Sbjct: 158 DS-HWLYWALEKYNKRSISQTKVHT------RVAVIFIPLPKFWA---LFDQQGSVWLLQ 207
Query: 374 TLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG--HPRGASQLQ---RVGIGLAV 428
++ ++PI A I+ + + T+ TL V+Q TM+ + + Q + + + +
Sbjct: 208 AILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILL 267
Query: 429 SILSVIWAGLLEF 441
IL + LL
Sbjct: 268 PILDFLVYPLLRL 280
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 6e-18
Identities = 40/210 (19%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSF----ADSSNAVNNFLGISQASSVLGGFLA 129
IF E+ ER +Y+G+ ++ +++Y + ++ + + + + ++GG+LA
Sbjct: 26 IFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLA 85
Query: 130 DAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLY 189
D LG TI + + G + + +
Sbjct: 86 DRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGG-------------------------- 119
Query: 190 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249
LY L + G +P +SS + + + D F FY+ + +G+++A +
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELYPKD----DPRRDGGFTLFYMGINIGSLIAPIIT 175
Query: 250 VYIQMEHGWGSAFGALAIAMGISNMLFFIG 279
+ + +GW FG A+ M I ++F +G
Sbjct: 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205
|
Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 2e-15
Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 34/227 (14%)
Query: 92 MVTFMF-YVMHKSFADSSNAVN---NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147
M T + Y+++ + A N F + + ++G +AD++LG++ TI + +Y+
Sbjct: 6 MKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYV 65
Query: 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPC 207
G +L A + P D L+G L + G GI+PC
Sbjct: 66 VGHALASLGAVPSLGHPLHD----ALSLVG----------------LALIALGTGGIKPC 105
Query: 208 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL-------VVYIQMEHGWGS 260
VS+FG DQF+ER + RFF+FFY ++ G++ + + V + +
Sbjct: 106 VSAFGGDQFEERQLSLRF---RFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPL 162
Query: 261 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR 307
AFG I M ++ ++F +G+ +Y+ + P G+ +++V + +V A +KR
Sbjct: 163 AFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR 209
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 37/211 (17%), Positives = 66/211 (31%), Gaps = 36/211 (17%)
Query: 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA 131
L +F + LS + + S + + V+ F S+L G+L+D
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191
+ GR + + ++ G + A S +L +
Sbjct: 61 F-GRRRVLLLGLLLFALGSLLLAF--------------------------ASSLWLLLVG 93
Query: 192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251
L G G + P ++ A+ F + R F +GA++ L
Sbjct: 94 RFL--LGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGL 145
Query: 252 IQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282
+ GW F LAI + +L L
Sbjct: 146 LAESLGWRWLFLILAILGLLLALLLLFLLRL 176
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 39/217 (17%)
Query: 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD--SSNAVNNFLGISQASSVLGGFLADA 131
+F E+ ER +Y+G+ + ++ F+ + + + + +G + D
Sbjct: 15 LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDR 74
Query: 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191
G T+ L GI L +LG A S +Y
Sbjct: 75 VWGTKKTMV---------LGGIVL-------------------MLGHFMLAMS---IYPD 103
Query: 192 TVLYITGF---GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
+ Y G G+ + SS ++ + D F FY+S+ +G+ ++ L
Sbjct: 104 LIFYGLGTIAVGSGLFKANPSSMVGKLYE---RGDMPRRDGGFTLFYMSINIGSFISPLL 160
Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
I +G+ F A+ M I + FF G + R
Sbjct: 161 AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRD 197
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 39/223 (17%), Positives = 69/223 (30%), Gaps = 35/223 (15%)
Query: 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142
+ L + ++ + S + + F + L G L+D + GR + I
Sbjct: 10 LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRVLLIG 68
Query: 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA 202
++ GL + + S +L + VL G G
Sbjct: 69 LLLFALGLLLLLFAS--------------------------SLWLLLVLRVL--QGLGGG 100
Query: 203 GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 262
+ P ++ AD F R +GA + L + GW +AF
Sbjct: 101 ALFPAAAALIADWFPPE------ERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAF 154
Query: 263 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR 305
LAI ++ +L + P P LV A++
Sbjct: 155 LILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK 197
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 512 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.97 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.93 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.85 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.85 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.84 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.84 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.84 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.84 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.83 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.83 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.83 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.83 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.82 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.82 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.81 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.81 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.81 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.81 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.81 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.81 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.81 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.8 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.8 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.8 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.79 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.78 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.78 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.78 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.78 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.78 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.78 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.77 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.77 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.77 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.77 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.77 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.76 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.76 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.76 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.76 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.76 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.76 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.75 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.75 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.75 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.75 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.75 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.75 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.74 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.74 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.74 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.73 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.73 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.72 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.71 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.71 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.71 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.71 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.71 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.71 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.7 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.69 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.69 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.69 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.69 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.69 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.69 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.68 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.68 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.67 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.65 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.64 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.63 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.62 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.62 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.62 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.59 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.59 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.58 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.57 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.56 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.54 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.53 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.53 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.53 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.53 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.51 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.5 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.5 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.5 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.49 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.48 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.47 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.44 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.44 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.44 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.43 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.43 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.42 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.42 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.42 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.41 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.4 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.4 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.4 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.4 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.39 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.38 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.38 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.38 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.38 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.36 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.36 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.35 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.35 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.35 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.34 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.34 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.34 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.33 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.32 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.32 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.32 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.32 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.32 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.32 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.3 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.29 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.29 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.29 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.29 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.28 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.28 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.28 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.27 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.26 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.25 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.22 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.22 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.21 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.21 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.2 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.2 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.19 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.19 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.18 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.18 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.17 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.16 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.16 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.15 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.14 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.13 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.12 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.12 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.12 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.11 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.08 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.07 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.07 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.07 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.06 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.06 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.05 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.05 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.04 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.04 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.03 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.02 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.02 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.0 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.99 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.99 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.99 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.98 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.98 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.97 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.9 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.9 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.89 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.89 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.89 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.88 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.88 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.87 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.85 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.83 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.81 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.81 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.81 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.8 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.8 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.79 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.79 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.77 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.76 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.75 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.74 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.73 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.72 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.69 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.63 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.58 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.56 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.55 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.55 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.55 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.51 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.5 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.47 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.47 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.46 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.44 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.37 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.35 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.33 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.31 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.3 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.28 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.27 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.26 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.22 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.17 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.04 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.0 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.97 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.89 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.85 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.84 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.73 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.7 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.66 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.6 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.5 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.46 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.34 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.26 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.21 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.1 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.08 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.07 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.03 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.01 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.95 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.92 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.84 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.81 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.71 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.4 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 96.28 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 96.17 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.05 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 95.81 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 95.19 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 95.15 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 94.53 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 93.97 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 93.95 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 93.44 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 92.97 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 92.87 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 91.2 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 87.04 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 86.12 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 86.06 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 85.26 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 83.62 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 82.67 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-61 Score=516.03 Aligned_cols=448 Identities=43% Similarity=0.699 Sum_probs=402.8
Q ss_pred CCCccccCCCCCcccc---cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHH
Q 010358 48 GTTPVNVHGKPIADLS---KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVL 124 (512)
Q Consensus 48 ~~~~~~~~~~p~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~ 124 (512)
+.+.+++++++. .+. +++.|+++.++++.+.++++++|++..+++.|++.++|.+...++..++.|.+...+.+++
T Consensus 14 ~~~~~d~~~~~~-~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~ 92 (571)
T KOG1237|consen 14 DFTSVDYRGPLL-GSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLL 92 (571)
T ss_pred ccceeeccCCcc-cccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHH
Confidence 345677787777 665 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcCh
Q 010358 125 GGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGI 204 (512)
Q Consensus 125 ~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~ 204 (512)
+|++||.|+||++++.++.+++++|.+++.+++..+.+.|. .| ........|+.++..+...++.++.++++|.|+.
T Consensus 93 g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~--~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~ 169 (571)
T KOG1237|consen 93 GAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPF--MC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGI 169 (571)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc--cc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCC
Confidence 99999999999999999999999999999999999988886 44 1111345699999999999999999999999999
Q ss_pred hhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhccccc
Q 010358 205 RPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284 (512)
Q Consensus 205 ~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~ 284 (512)
+++..++++|||++.+++++..+.++|+|+|+..++|..++.++..|++++.||.++|.++.+++++++++|+.+.+.|+
T Consensus 170 r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~ 249 (571)
T KOG1237|consen 170 RPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYR 249 (571)
T ss_pred CCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEE
Confidence 99999999999998888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchHHHHHHHHHHHhhhccccCCcccccccccCCCcccccCCcccccCCccchhhHHHhhhcccc---CCCCCc
Q 010358 285 HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDV---INPSPW 361 (512)
Q Consensus 285 ~~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~---~~~~~w 361 (512)
+.+|.++|+..++||++++.+||+...+.+++. + . +.........++++++++|+|+.+...+. ...+||
T Consensus 250 ~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~-~-~-----~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w 322 (571)
T KOG1237|consen 250 YKKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEE-L-Y-----YDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPW 322 (571)
T ss_pred eeCCCCCchhHHHHHHHHHHHHHhccCCCcchh-c-c-----ccccccccccCCcccchhhHhhccCCcccccccccCCc
Confidence 999999999999999999999999888776543 3 1 11111223345778999999998765432 246899
Q ss_pred ccccchhHHHHHHHHhhcchhhhhHHHHHHhhccchHHHHHHhhhcccc-------------------------------
Q 010358 362 KLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM------------------------------- 410 (512)
Q Consensus 362 ~~~~~~~ve~~k~~~~~l~v~~~~~~~~~~~~q~~t~~~~q~~~~~~~~------------------------------- 410 (512)
++|++++|||+|+++|++|+|++.++|++++.|+.|+++.|+.+||+++
T Consensus 323 ~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~v 402 (571)
T KOG1237|consen 323 RLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIV 402 (571)
T ss_pred cCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeeh
Confidence 9999999999999999999999999999999999999999999999987
Q ss_pred -------cCCCCCChhHHHHHHHHHHHHHHHHH------------------------------------------HHHHH
Q 010358 411 -------GHPRGASQLQRVGIGLAVSILSVIWA------------------------------------------GLLEF 441 (512)
Q Consensus 411 -------~~~~~~~~~~~i~iG~~~~~ls~~~a------------------------------------------~~~e~ 441 (512)
+++.+.+++|||++|+++++++|..+ +++||
T Consensus 403 P~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEF 482 (571)
T KOG1237|consen 403 PFARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEF 482 (571)
T ss_pred hhhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 23357899999999999999999886 78999
Q ss_pred HHhhcCccchhHHHHHHHHHhHHHHHHHHHHHHHhhhhcCCCCCCCCCCCC-CCcccccchHHhhhhhcc
Q 010358 442 LYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA-QNINTDTSTGLSRSMAMT 510 (512)
Q Consensus 442 ~~~~~P~~~~~~~~g~~~~~~~ig~~l~~~l~~~v~~~t~~~~~~~~~w~~-~~~n~~~ld~~~~~l~~~ 510 (512)
+|+|+|++|||.+++++++..++|++++++++.+++..|+ + .++|++ +|||++|+|||||++|.+
T Consensus 483 fY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~--~--~~~w~~~~~ln~~~ld~Fy~lla~~ 548 (571)
T KOG1237|consen 483 FYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTG--K--AAEWLGFANLNKGRLDYFYWLLAVY 548 (571)
T ss_pred hHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C--CcccCChhHhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999996 4 458999 999999999999999864
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=313.59 Aligned_cols=356 Identities=19% Similarity=0.276 Sum_probs=283.5
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcC----CChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHH
Q 010358 62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH----KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW 137 (512)
Q Consensus 62 ~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~----~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~ 137 (512)
....+++|.++.++.++++||++|||+...+..|++..++ +++++|..+.+.|....++.+++|||+|||++|+|+
T Consensus 14 ~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~ 93 (498)
T COG3104 14 MKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR 93 (498)
T ss_pred cccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 4455688999999999999999999999999999999988 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCC
Q 010358 138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (512)
Q Consensus 138 ~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~ 217 (512)
++..+.+++++|+++++.+.. .....+++++.++++|.|++++++.++++|++|
T Consensus 94 tI~lGail~~iGh~~L~~~~~--------------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~ 147 (498)
T COG3104 94 TIVLGAILMAIGHLVLAISSV--------------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYP 147 (498)
T ss_pred HHHHHHHHHHHHHHHHhcccc--------------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcC
Confidence 999999999999999998620 245679999999999999999999999999999
Q ss_pred CCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhcccccccC--CCCCchH-
Q 010358 218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL--PGGSPLT- 294 (512)
Q Consensus 218 ~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~--~~~~~~~- 294 (512)
+++++ |..+|+++|++.|+|+.++|++.+++.+++||.++|.++++.+.++++.++++++.+.... +..+|..
T Consensus 148 ~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~ 223 (498)
T COG3104 148 KDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSF 223 (498)
T ss_pred CCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhh
Confidence 99987 9999999999999999999999999999999999999999999999999999988776542 2222221
Q ss_pred -----HHHHHHHHHHhhhccccCCcccccccccCCCcccccCCcccccCCccch-hhHHHhhhcccc-CCCCCcccccch
Q 010358 295 -----RVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRC-LDKAALELKEDV-INPSPWKLCTVT 367 (512)
Q Consensus 295 -----~~~~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-l~~a~~~~~~~~-~~~~~w~~~~~~ 367 (512)
....+++....-.- .. +. ..+..+. +.........-. .....| .+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~-------~~-~l----------------~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~ 276 (498)
T COG3104 224 NFLLPVLGGLVVMILAALL-------TL-LL----------------NQNTFSGVLLVISILIAIIYFAEAFRS---PKV 276 (498)
T ss_pred hhhhhhHHHHHHHHHHHHH-------HH-HH----------------HHHHHHHHHHHHHHHHHHHHHHHHhcc---Ccc
Confidence 11111111111000 00 00 0000000 011000000000 000111 123
Q ss_pred hHHHHHHHHhhcchhhhhHHHHHHhhccchHHHHHHh-hhcccc---------------------------------cCC
Q 010358 368 QVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHM---------------------------------GHP 413 (512)
Q Consensus 368 ~ve~~k~~~~~l~v~~~~~~~~~~~~q~~t~~~~q~~-~~~~~~---------------------------------~~~ 413 (512)
+ +|+||++..+|+++..++||++++|++|.+..|+. ..|++. +++
T Consensus 277 ~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~ 355 (498)
T COG3104 277 F-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN 355 (498)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC
Confidence 3 78999999999999999999999999999999975 466662 344
Q ss_pred CCCChhHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhhcCccchhHHHHHH
Q 010358 414 RGASQLQRVGIGLAVSILSVIWA-----------------------------------GLLEFLYEEAPDAMKSIGSAYA 458 (512)
Q Consensus 414 ~~~~~~~~i~iG~~~~~ls~~~a-----------------------------------~~~e~~~~~~P~~~~~~~~g~~ 458 (512)
+.++...|+++|+++++++++.. .++|++++.+|+.|+|.+||+|
T Consensus 356 ~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~w 435 (498)
T COG3104 356 KQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMW 435 (498)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHH
Confidence 77899999999999999998875 6889999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHH
Q 010358 459 ALAGGLGCFAASILNSI 475 (512)
Q Consensus 459 ~~~~~ig~~l~~~l~~~ 475 (512)
++..+.|+.++..+.+.
T Consensus 436 fLt~a~~~~l~g~va~~ 452 (498)
T COG3104 436 FLTVAAGQTLGGQVAGL 452 (498)
T ss_pred HHHHHHHHHhhceeccc
Confidence 99999999998888774
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=284.30 Aligned_cols=346 Identities=14% Similarity=0.192 Sum_probs=262.5
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010358 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (512)
Q Consensus 64 ~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~ 143 (512)
.+++||.++.+++.+++|+++||++..+++.|+++++|++..+++++.+.+....++.++++|+++||++||||+++++.
T Consensus 9 ~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~ 88 (489)
T PRK10207 9 LLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA 88 (489)
T ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999559999999999
Q ss_pred HHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhh
Q 010358 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (512)
Q Consensus 144 ~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~ 223 (512)
+++.++.++++++. .....++++|.++++|.|..+|+..++++|+||+++++
T Consensus 89 ~~~~~g~~~~~~~~---------------------------~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~- 140 (489)
T PRK10207 89 IVLAIGYFMTGMSL---------------------------LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR- 140 (489)
T ss_pred HHHHHHHHHHHHhc---------------------------cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh-
Confidence 99999999988751 11234668899999999999999999999999987632
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhccccccc--CCCCCchH--HHHHH
Q 010358 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLT--RVAQV 299 (512)
Q Consensus 224 ~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~--~~~~~~~~--~~~~v 299 (512)
|++.++++|++.|+|+.+||.+++++.++.||+++|+++.+.++++++.+...++.+++. +|++++.. .....
T Consensus 141 ---~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~ 217 (489)
T PRK10207 141 ---LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLV 217 (489)
T ss_pred ---hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHH
Confidence 688999999999999999999999999999999999998777777776666666555443 23232221 11110
Q ss_pred HH------HHHhhhccccCCcccccccccCCCcccccCCcccccCCccchhhHHH------hhhccccCCCCCcccccch
Q 010358 300 LV------AAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA------LELKEDVINPSPWKLCTVT 367 (512)
Q Consensus 300 ~~------~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~------~~~~~~~~~~~~w~~~~~~ 367 (512)
.. .... +..+.. +.. + -.+.... ..... ...+
T Consensus 218 ~~~~~~~~~~~~-~~~~~~-~~~----------------------~--~~~~~~~~i~~~~f~~~~----------~~~~ 261 (489)
T PRK10207 218 LLGSVVMIFVCA-WLMHNV-EVA----------------------N--LVLIVLSIVVTIIFFREA----------FKLD 261 (489)
T ss_pred HHHHHHHHHHHH-HHHhhh-hHH----------------------H--HHHHHHHHHHHHHHHHHH----------hcCC
Confidence 00 0000 000000 000 0 0000000 00000 1112
Q ss_pred hHHHHHHHHhhcchhhhhHHHHHHhhccchHHHHHHh-hhcccc---------------------------------cCC
Q 010358 368 QVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHM---------------------------------GHP 413 (512)
Q Consensus 368 ~ve~~k~~~~~l~v~~~~~~~~~~~~q~~t~~~~q~~-~~~~~~---------------------------------~~~ 413 (512)
+ .++++.+..+++++..+++|.++.|..+.+..|.+ +++++. +++
T Consensus 262 ~-~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~ 340 (489)
T PRK10207 262 K-TGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKG 340 (489)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCC
Confidence 2 34666777788888899999999999888777765 455432 345
Q ss_pred CCCChhHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhhcCccchhHHHHHH
Q 010358 414 RGASQLQRVGIGLAVSILSVIWA-----------------------------------GLLEFLYEEAPDAMKSIGSAYA 458 (512)
Q Consensus 414 ~~~~~~~~i~iG~~~~~ls~~~a-----------------------------------~~~e~~~~~~P~~~~~~~~g~~ 458 (512)
..+++.+|+.+|+++.+++++++ .+++++++.+|++++|.++|++
T Consensus 341 ~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~ 420 (489)
T PRK10207 341 KDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMW 420 (489)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHH
Confidence 57899999999999988777421 4578889999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHhh
Q 010358 459 ALAGGLGCFAASILNSIIK 477 (512)
Q Consensus 459 ~~~~~ig~~l~~~l~~~v~ 477 (512)
+++.++|+.+|..+.+++.
T Consensus 421 ~l~~~ig~~lg~~l~~~~~ 439 (489)
T PRK10207 421 FLTQAAAFLLGGYVATFTA 439 (489)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988764
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=281.88 Aligned_cols=356 Identities=15% Similarity=0.161 Sum_probs=263.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh--cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (512)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~--l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~ 142 (512)
.++++.++.+++.+++|++++|++.++++.|++++ +|++..+++.+.+.+.++.+++++++|+++||++|||+++.++
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 45778899999999999999999999999999988 9999999999999999999999999999999955999999999
Q ss_pred HHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChh
Q 010358 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (512)
Q Consensus 143 ~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~ 222 (512)
.++..++.++++++ .+...+++++++.++|.|+..++..++++|++|+++++
T Consensus 86 ~~~~~~g~~~~~~~----------------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~ 137 (475)
T TIGR00924 86 GIVLMLGHFMLAMS----------------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP 137 (475)
T ss_pred HHHHHHHHHHHHhc----------------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc
Confidence 99999999888775 34566778899999999999999999999999876521
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCchHHH------
Q 010358 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV------ 296 (512)
Q Consensus 223 ~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~------ 296 (512)
.|+++++++|++.|+|+++||.+++++.+++||++.|+++++.+++++++++..++.+++.++++++.++.
T Consensus 138 ---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (475)
T TIGR00924 138 ---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGK 214 (475)
T ss_pred ---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHH
Confidence 28889999999999999999999999999999999999988877777777777666665443333222110
Q ss_pred -HHH----HHHHHhhhccccCCcccccccccCCCcccccCCcccccCCccchhhHHHhhhccccCCCCCcccccchhHHH
Q 010358 297 -AQV----LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEE 371 (512)
Q Consensus 297 -~~v----~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~w~~~~~~~ve~ 371 (512)
... +....+.... ..+. . . .+.-.....-+...+.... ..+| +.++ ++
T Consensus 215 ~~~~~~~~~~~~~~~~~~-~~~~--~-~-----------------~~~~~~~~~~~~~~~~~~~-~~~~----~~~~-~~ 267 (475)
T TIGR00924 215 LLLALLAALALVFFCAWL-MHHV--V-I-----------------ANILLMTVTLAVIIFFFRL-AFKP----RLDA-VA 267 (475)
T ss_pred HHHHHHHHHHHHHHHHHH-Hhcc--H-H-----------------HHHHHHHHHHHHHHHHHHH-HHhc----cCCH-HH
Confidence 000 0000110000 0000 0 0 0000000000111110000 0011 1123 33
Q ss_pred HHHHHhhcchhhhhHHHHHHhhccchHHHHH-Hhhhcccc---------------------------------cCCCCCC
Q 010358 372 VKTLVRLVPIPACTIMLNVILTEFLTLSVQQ-AYTMNTHM---------------------------------GHPRGAS 417 (512)
Q Consensus 372 ~k~~~~~l~v~~~~~~~~~~~~q~~t~~~~q-~~~~~~~~---------------------------------~~~~~~~ 417 (512)
+++..++++++++.+++|.+++|+.+.+..+ .+++|++. ++.++++
T Consensus 268 ~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~ 347 (475)
T TIGR00924 268 RNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPT 347 (475)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4555668999999999999999999976554 45577653 2335678
Q ss_pred hhHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHhhcCccchhHHHHHHHHHhH
Q 010358 418 QLQRVGIGLAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIGSAYAALAGG 463 (512)
Q Consensus 418 ~~~~i~iG~~~~~ls~~~a----------------------------------~~~e~~~~~~P~~~~~~~~g~~~~~~~ 463 (512)
...|+++|+++.+++++.+ +..+++++++|+++||+++|++.+..+
T Consensus 348 ~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~ 427 (475)
T TIGR00924 348 TPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQA 427 (475)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 8889999999988776552 567788999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 010358 464 LGCFAASILNSIIKS 478 (512)
Q Consensus 464 ig~~l~~~l~~~v~~ 478 (512)
+|+++++.+......
T Consensus 428 ~g~~l~~~~~~~~~~ 442 (475)
T TIGR00924 428 MGSLLGGYLATFGAV 442 (475)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999998886643
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=292.02 Aligned_cols=301 Identities=25% Similarity=0.433 Sum_probs=253.3
Q ss_pred HHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhccccc
Q 010358 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (512)
Q Consensus 83 ~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l 162 (512)
++|||+.+.+..|+++.+|++.+.+..+...+....++.+++||+++|+++||++++.++.+++.+|.+++++.+..+..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999876432111
Q ss_pred CCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 010358 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (512)
Q Consensus 163 ~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~ 242 (512)
.+ .....+++++.++++|.|+++|+..++++||+++++. +.|.++|+|+|+++|+|+
T Consensus 81 ~~--------------------~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGS 137 (654)
T TIGR00926 81 HP--------------------LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGS 137 (654)
T ss_pred cc--------------------hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHH
Confidence 11 2345577889999999999999999999999986442 348999999999999999
Q ss_pred HHHhHHHHhhhhcc-------chHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCchHHHHHHHHHHHhhhccccCCcc
Q 010358 243 IVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSE 315 (512)
Q Consensus 243 ~l~p~i~~~l~~~~-------gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~ 315 (512)
.+++++.+++++.. +|.++|.+++++++++++++..+++.+++.+|.++++.+++++++.+.|++....+++
T Consensus 138 lis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~- 216 (654)
T TIGR00926 138 LISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH- 216 (654)
T ss_pred HHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-
Confidence 99999999998543 6999999999999999999999999998888889988999999988887654321100
Q ss_pred cccccccCCCcccccCCcccccCCccchhhHHHhhhccccCCCCCcccccchhHHHHHHHHhhcchhhhhHHHHHHhhcc
Q 010358 316 LIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEF 395 (512)
Q Consensus 316 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~w~~~~~~~ve~~k~~~~~l~v~~~~~~~~~~~~q~ 395 (512)
...+++|+++.. ..++++||+|++++++++++..++||..+.|+
T Consensus 217 -----------------------~~~~~ld~a~~~-------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~ 260 (654)
T TIGR00926 217 -----------------------WPLHWLDYAKDK-------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQ 260 (654)
T ss_pred -----------------------cchhHHHHhccc-------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 012466665532 23457899999999999999999999999999
Q ss_pred chHHHHHHhhhcccc----------------------------------cCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 010358 396 LTLSVQQAYTMNTHM----------------------------------GHPRGASQLQRVGIGLAVSILSVIWAGLLEF 441 (512)
Q Consensus 396 ~t~~~~q~~~~~~~~----------------------------------~~~~~~~~~~~i~iG~~~~~ls~~~a~~~e~ 441 (512)
.+.++.|+.+|++++ |++..+++++|+++|++++++++++++..|.
T Consensus 261 ~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~ls~l~k~~iG~~la~la~~va~~ve~ 340 (654)
T TIGR00926 261 GSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTRFTSLRKMAVGGLLAALSFFVAALVQL 340 (654)
T ss_pred hhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998763 3445688999999999999999999866655
Q ss_pred HH
Q 010358 442 LY 443 (512)
Q Consensus 442 ~~ 443 (512)
-.
T Consensus 341 ~~ 342 (654)
T TIGR00926 341 KV 342 (654)
T ss_pred HH
Confidence 44
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-31 Score=277.43 Aligned_cols=343 Identities=15% Similarity=0.192 Sum_probs=262.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 010358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (512)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l 145 (512)
+||+.++.+++.++++++++|++..+++.|+++.+|++..+++.+...+....+++++++|+++||++||||++.++.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhh
Q 010358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (512)
Q Consensus 146 ~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (512)
..++.++++... .+...+++++.++++|.|..+++.+++++|+||+++++
T Consensus 86 ~~lg~lll~~~~---------------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~--- 135 (493)
T PRK15462 86 MAIGHVVLGASE---------------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR--- 135 (493)
T ss_pred HHHHHHHHHHhh---------------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc---
Confidence 999987665420 11233555666777888889999999999999987543
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhcccccccCC-CCCchH--HHHHHH--
Q 010358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLT--RVAQVL-- 300 (512)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~-~~~~~~--~~~~v~-- 300 (512)
|+++++++|...|+|++++|.+++++.+++||+++|+++++.+++++++++..++.+.+... ..+|.+ +....+
T Consensus 136 -R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 214 (493)
T PRK15462 136 -RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWG 214 (493)
T ss_pred -ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHH
Confidence 89999999999999999999999999999999999999888888888887776655433211 112221 100000
Q ss_pred ---HHH-----HhhhccccCCcccccccccCCCcccccCCcccccCCccchh-hHHH-----h---hhccccCCCCCccc
Q 010358 301 ---VAA-----FRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL-DKAA-----L---ELKEDVINPSPWKL 363 (512)
Q Consensus 301 ---~~a-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~a~-----~---~~~~~~~~~~~w~~ 363 (512)
... ..... +. + +....+ -... . ....
T Consensus 215 ~~~~~~~~~~~~~~~~----------~~-~----------------~~~~~~~~~~~~~~~~~~~~~~~~---------- 257 (493)
T PRK15462 215 WLLVLLVATPALITVL----------FW-K----------------EWSVYALIVATIIGLGVLAKIYRK---------- 257 (493)
T ss_pred HHHHHHHHHHHHHHHH----------HH-H----------------HHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 000 00000 00 0 000000 0000 0 0000
Q ss_pred ccchhHHHHHHHHhhcchhhhhHHHHHHhhccchHHHHHH-hhhcccc--------------------------------
Q 010358 364 CTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQA-YTMNTHM-------------------------------- 410 (512)
Q Consensus 364 ~~~~~ve~~k~~~~~l~v~~~~~~~~~~~~q~~t~~~~q~-~~~~~~~-------------------------------- 410 (512)
. ...+|+||++..+++++..++||..|+|.++.+...+ +++|+++
T Consensus 258 -~-~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l 335 (493)
T PRK15462 258 -A-ENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKES 335 (493)
T ss_pred -c-CCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 0 1236789999999999999999999999999988776 5688875
Q ss_pred -cCCCCCChhHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHhhcCccchhHHH
Q 010358 411 -GHPRGASQLQRVGIGLAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIGS 455 (512)
Q Consensus 411 -~~~~~~~~~~~i~iG~~~~~ls~~~a----------------------------------~~~e~~~~~~P~~~~~~~~ 455 (512)
|+++.++...|+++|+++.++++++. .+++++.+.+|++++|++|
T Consensus 336 ~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~m 415 (493)
T PRK15462 336 VAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLT 415 (493)
T ss_pred hcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHH
Confidence 34557899999999999999998654 5677788999999999999
Q ss_pred HHHHHHh-HHHHHHHHHHHHHhhh
Q 010358 456 AYAALAG-GLGCFAASILNSIIKS 478 (512)
Q Consensus 456 g~~~~~~-~ig~~l~~~l~~~v~~ 478 (512)
|+|+++. ++|+.+++.+.+....
T Consensus 416 g~w~l~~~~~~~~~~g~~~~~~~~ 439 (493)
T PRK15462 416 GIYMLLSGAIANYLAGVIADQTSQ 439 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9998854 7999999888876643
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-29 Score=266.22 Aligned_cols=351 Identities=15% Similarity=0.201 Sum_probs=257.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 010358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (512)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l 145 (512)
++++.++.+++.++++++++|++..+++.|+++++|++..+++.+.+.+....+..++++|+++||++|||+++.++.++
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~ 97 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV 97 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 56678899999999999999999999999999999999999998888888888888889999999955999999999999
Q ss_pred HHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhh
Q 010358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (512)
Q Consensus 146 ~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (512)
+.++..+++++. .+...++++++++++|.|...++..++++|++|+++.+
T Consensus 98 ~~ig~~l~~~~~---------------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~--- 147 (500)
T PRK09584 98 LAIGYALVAWSG---------------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR--- 147 (500)
T ss_pred HHHHHHHHHHhc---------------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh---
Confidence 999988877641 13455678889999999999999999999999876532
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhccccccc--CCCCCchH--HH----H
Q 010358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLT--RV----A 297 (512)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~--~~~~~~~~--~~----~ 297 (512)
|+.+++++|++.++|+.++|.+++++.+++||++.|++.++.++++++.+++.++.+++. ++++++.. .. .
T Consensus 148 -~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (500)
T PRK09584 148 -LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIV 226 (500)
T ss_pred -hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHH
Confidence 567899999999999999999999999999999999998887777776665554443332 23222221 11 1
Q ss_pred HHHHHHH-hhhccccCCcccccccccCCCcccccCCcccccCCccchhhHHHhhhccccCCCCCcccccchhHHHHHHHH
Q 010358 298 QVLVAAF-RKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLV 376 (512)
Q Consensus 298 ~v~~~a~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~w~~~~~~~ve~~k~~~ 376 (512)
.+..... .......++ .. ++-............. .+.+..++ +|+++++
T Consensus 227 ~~~~~~~~~~~~~~~~~-----~~-----------------~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~ 276 (500)
T PRK09584 227 GVVALIAIATWLLHNQE-----IA-----------------RMALGVVALGIVVIFG-------KEAFAMKG-AARRKMI 276 (500)
T ss_pred HHHHHHHHHHHHHhcch-----HH-----------------HHHHHHHHHHHHHHHH-------HHHhhcCH-HHHHHHH
Confidence 1111111 110000000 00 0000000000000000 00011122 4566777
Q ss_pred hhcchhhhhHHHHHHhhccchHHHHHHhh-hcccc------------------------------cCCCCCChhHHHHHH
Q 010358 377 RLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHM------------------------------GHPRGASQLQRVGIG 425 (512)
Q Consensus 377 ~~l~v~~~~~~~~~~~~q~~t~~~~q~~~-~~~~~------------------------------~~~~~~~~~~~i~iG 425 (512)
..+++++..++||.++.|+++.+..|+.+ +|++. |.+++.++.+|+.+|
T Consensus 277 ~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G 356 (500)
T PRK09584 277 VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIG 356 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHH
Confidence 77889999999999999999999888754 55432 334456788999999
Q ss_pred HHHHHHHHHHH----------------------------------HHHHHHHhhcCccchhHHHHHHHHHhHHHHHHHHH
Q 010358 426 LAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASI 471 (512)
Q Consensus 426 ~~~~~ls~~~a----------------------------------~~~e~~~~~~P~~~~~~~~g~~~~~~~ig~~l~~~ 471 (512)
+++.+++++.. .+++++++.+|+++||+++|+++++.++|++++..
T Consensus 357 ~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~ 436 (500)
T PRK09584 357 MVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGY 436 (500)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987662 45678889999999999999999999999999988
Q ss_pred HHHHhh
Q 010358 472 LNSIIK 477 (512)
Q Consensus 472 l~~~v~ 477 (512)
+.+.+.
T Consensus 437 ~~~~~~ 442 (500)
T PRK09584 437 VANLMA 442 (500)
T ss_pred HHHHhc
Confidence 887653
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-25 Score=228.99 Aligned_cols=268 Identities=34% Similarity=0.502 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhcc
Q 010358 136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ 215 (512)
Q Consensus 136 ~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~ 215 (512)
+|+++++.+++++|++++++++..+.... ..+...++++++++++|.|+.+||+.++++||
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~~~-------------------~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq 61 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSLPS-------------------GIQLGLFYIGLALIAVGTGGIKPNISPFGADQ 61 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC-------------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchhhh-------------------hHHHHHHHHHHHHHHhccccccccHHHHHHHH
Confidence 58999999999999999888866433311 24667899999999999999999999999999
Q ss_pred CCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhccccccc-CCCCCchH
Q 010358 216 FDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR-LPGGSPLT 294 (512)
Q Consensus 216 f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~-~~~~~~~~ 294 (512)
++++++ .+|.++|+|||++.|+|+.+++++.+++++++||.++|+++++.+++++++++.+++.|++. ++.++++.
T Consensus 62 ~~~~~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~ 138 (372)
T PF00854_consen 62 YDEDDD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLT 138 (372)
T ss_dssp SSTTTT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S
T ss_pred hcccch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccc
Confidence 998742 34999999999999999999999999999999999999999999999999999999999888 77888888
Q ss_pred H-HHHHHHHHHhhhccccCCcccccccccCCCcccccCCcccccCCccchhhHHHhhhccccCCCCCcc-cccchhHHHH
Q 010358 295 R-VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWK-LCTVTQVEEV 372 (512)
Q Consensus 295 ~-~~~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~w~-~~~~~~ve~~ 372 (512)
+ ..+++..+.+++....|....+ +++.....+.. . ..........+...... ...|. .|+++++++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 207 (372)
T PF00854_consen 139 NFIKLVLVAAFKKRKLAVPKGSSW-LDWALFQYSER----S--IFGIIVFIRAAVIFFPE----IFFWALFCQVQRVEEL 207 (372)
T ss_dssp --SHHHHHHHHHHHCCCH-HHHHH-HHHHHHHHCCC----C--CCCCCCHHHHHHHHCCC----HHHHTTTSSTTTHHHC
T ss_pred hhHHHHHHHHHHHhhcccccchHH-HHHhhhhhhhh----h--hhhhhhhccchhhhhhh----hhhcccCCccceeeee
Confidence 8 6667777777776655433222 21110000000 0 00011111111111110 01111 1678899999
Q ss_pred HHHHhhcchhhhhHHHHHHhhccchHHHHHHhhhcccc----------------------------------cCCCCCCh
Q 010358 373 KTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM----------------------------------GHPRGASQ 418 (512)
Q Consensus 373 k~~~~~l~v~~~~~~~~~~~~q~~t~~~~q~~~~~~~~----------------------------------~~~~~~~~ 418 (512)
|.+.+.+|++.+.++|+..+.|..++...|..++|+.. ++++.+++
T Consensus 208 k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~~~~~~ 287 (372)
T PF00854_consen 208 KALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRGIQPSP 287 (372)
T ss_dssp CHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT------
T ss_pred eeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhcccchh
Confidence 99999999999999999999999999999988886544 55577899
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 010358 419 LQRVGIGLAVSILSVIWA 436 (512)
Q Consensus 419 ~~~i~iG~~~~~ls~~~a 436 (512)
.+|+++|+++++++++++
T Consensus 288 ~~k~~~G~~~~~~~~~~~ 305 (372)
T PF00854_consen 288 PQKFGIGMVFAILAMFVA 305 (372)
T ss_dssp HHHHHHH-HHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 999999999998888775
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-18 Score=177.39 Aligned_cols=172 Identities=17% Similarity=0.080 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 010358 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (512)
Q Consensus 74 i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l 153 (512)
++...++..++.......++.|+. +++.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence 445566666666556666677765 5899999999999999999999999999999998 99999999998888877776
Q ss_pred hhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHH
Q 010358 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (512)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~ 233 (512)
...... + ..+...+++++++.|++.+...+...++++|.+|+++ |++.+++
T Consensus 82 ~~~~~~----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 132 (365)
T TIGR00900 82 PFVALL----G-------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSL 132 (365)
T ss_pred HHHHHc----C-------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhH
Confidence 665210 0 0267888999999999999999999999999999876 9999999
Q ss_pred HHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 010358 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (512)
Q Consensus 234 ~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~ 276 (512)
++.+..+|..++|.+++++.+..||++.|++.++..+++.+..
T Consensus 133 ~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 175 (365)
T TIGR00900 133 SQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLI 175 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988777665554443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-18 Score=180.51 Aligned_cols=174 Identities=13% Similarity=0.204 Sum_probs=149.9
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010358 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (512)
Q Consensus 63 ~~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~ 142 (512)
..+.+|+.+....+..+...+..+.+... ...+.+++|++..+.+++.+.+..+..++.++.|+++||+ |||+++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~ 83 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALV-LAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTS 83 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence 34567888888888888888887666554 5567789999999999999999999999999999999998 999999999
Q ss_pred HHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChh
Q 010358 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (512)
Q Consensus 143 ~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~ 222 (512)
.++..++.+++.+. .+...++++|++.|++.+...+...+++.|.+|+++
T Consensus 84 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~-- 133 (405)
T TIGR00891 84 IVLFSAGTLACGFA----------------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL-- 133 (405)
T ss_pred HHHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh--
Confidence 99888888777765 467788899999999999999999999999999887
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccc--hHHHHHHHHHHHHHH
Q 010358 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGIS 272 (512)
Q Consensus 223 ~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~g--w~~~f~i~~~~~~i~ 272 (512)
|+.++++++.+..+|..+++.+++.+.+..+ |++.|.+.++..++.
T Consensus 134 ----~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 134 ----RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887766 999998765544443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-18 Score=178.44 Aligned_cols=175 Identities=13% Similarity=0.108 Sum_probs=146.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 010358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (512)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l 145 (512)
++|..++.+.+..++.....+...+ +...+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 83 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVPVG-LLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVL 83 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHc-chHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence 3565566666666655444443333 34567789999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhh
Q 010358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (512)
Q Consensus 146 ~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (512)
..++.+++.++ .+...++++|+++|++.+...+...+++.|++|+++
T Consensus 84 ~~~~~~~~~~~----------------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~----- 130 (390)
T PRK03545 84 FIASHVLSALA----------------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK----- 130 (390)
T ss_pred HHHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh-----
Confidence 99998888776 567889999999999999888999999999999877
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 010358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (512)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~ 276 (512)
|+++++++..+.++|..++|.+++.+.+..|||+.|++.++..++..+..
T Consensus 131 -r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~ 180 (390)
T PRK03545 131 -KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLL 180 (390)
T ss_pred -hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887665554443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-18 Score=180.95 Aligned_cols=169 Identities=15% Similarity=0.203 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 010358 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (512)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~ 151 (512)
++++...++..++.+.+.+.++.|+++++|++..+.+.+.+.+.+...+..+++|+++||+ |||+++.++.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 5566788888999999999999999999999999999999999999999999999999998 999999999999998888
Q ss_pred HHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHH
Q 010358 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (512)
Q Consensus 152 ~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (512)
++... .+.+.+++.+++.|++.+...+...+.+.|.+|+++ |++++
T Consensus 92 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~ 137 (400)
T PRK11646 92 TMAIA----------------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFF 137 (400)
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHH
Confidence 77664 456778889999999998888999999999999777 99999
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 010358 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (512)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~ 276 (512)
++++...++|..+||.+++++. .+||++.|++.++..++..++.
T Consensus 138 ~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~ 181 (400)
T PRK11646 138 SLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFN 181 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 6899999998777665554443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-18 Score=180.58 Aligned_cols=174 Identities=15% Similarity=0.131 Sum_probs=150.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 010358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (512)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~ 146 (512)
.+|.++.+....++..++.+.+.++++.|+++++|++..+.+++.+.+.+...++.++.|+++||+ |||+++.++.++.
T Consensus 5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~ 83 (395)
T PRK10054 5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAF 83 (395)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHH
Confidence 345677888888999999999999999999999999999999999999999999999999999997 9999999999888
Q ss_pred HHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 147 ~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
.++.+++.+. .+...+++++.+.+.+.+...++..+..+|.+|+++
T Consensus 84 ~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 129 (395)
T PRK10054 84 ASGFIAIPLV----------------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------ 129 (395)
T ss_pred HHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------
Confidence 8887777665 456666777777887777778888999999998776
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 010358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (512)
Q Consensus 227 r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~ 276 (512)
|++.+++.+...++|..++|.+++++.+ .||+..|++.+++.++.+++.
T Consensus 130 ~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~ 178 (395)
T PRK10054 130 KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI 178 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875 799999998877766654443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-19 Score=195.94 Aligned_cols=174 Identities=14% Similarity=0.057 Sum_probs=138.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 010358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (512)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~ 146 (512)
+|..+..+.+..+...+.. .+...+.+++.+++|++..+.+++.+++.++..++.+++|+++||+ |||++++++.++.
T Consensus 165 ~~~l~~i~~l~~~~~g~d~-~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~ 242 (742)
T TIGR01299 165 QWALFFVLGLALMADGVEV-FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVN 242 (742)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 3434333344444443333 3344566777889999999999999999999999999999999998 9999999999998
Q ss_pred HHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 147 ~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
.++.++++++ .+...++++|++.|+|.|+..++..++++|.+|.+.
T Consensus 243 ~i~~ll~afa----------------------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------ 288 (742)
T TIGR01299 243 GFFAFFSSFV----------------------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------ 288 (742)
T ss_pred HHHHHHHHHH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------
Confidence 8888877765 467889999999999999999999999999999877
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHhhhhc-------------cchHHHHHHHHHHHHHHHHHH
Q 010358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQME-------------HGWGSAFGALAIAMGISNMLF 276 (512)
Q Consensus 227 r~~~~~~~~~~~~lg~~l~p~i~~~l~~~-------------~gw~~~f~i~~~~~~i~~i~~ 276 (512)
|+..++++.....+|.++++.++.++... .+||+.|++.++..++++++.
T Consensus 289 Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~ 351 (742)
T TIGR01299 289 RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGAL 351 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877665433 368998888776655554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-18 Score=181.38 Aligned_cols=178 Identities=15% Similarity=0.077 Sum_probs=150.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 010358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (512)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l 145 (512)
.+|+.++.+.+..++..+....+.. ...++.+++|++..+.+++.+.+..+..++.++.|+++||+ |||+++.++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~ 82 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGF-AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVL 82 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHH-HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHH
Confidence 3566677777766666666655544 45589999999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhh
Q 010358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (512)
Q Consensus 146 ~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (512)
+.++.++++++ .+...++++|++.|++.++..+....+++|.+|+++
T Consensus 83 ~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~----- 129 (412)
T TIGR02332 83 WGIASTATMFA----------------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF----- 129 (412)
T ss_pred HHHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH-----
Confidence 99998888876 467889999999999999999999899999999877
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHhhhh------ccchHHHHHHHHHHHHHHHHHHHhh
Q 010358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIG 279 (512)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~l~p~i~~~l~~------~~gw~~~f~i~~~~~~i~~i~~~~~ 279 (512)
|+..+++++.+..+|..+++.+++++.+ ..|||+.|++.++..++..++..+.
T Consensus 130 -rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~ 188 (412)
T TIGR02332 130 -RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFW 188 (412)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999998864 4699999998777665544444443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-18 Score=179.27 Aligned_cols=176 Identities=17% Similarity=0.169 Sum_probs=149.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (512)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~ 144 (512)
+.+|..+....+..++..+..+...... ..+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 88 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAA-PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVA 88 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHH
Confidence 3567777777778888887776665544 455678999999999999999999999999999999998 99999999998
Q ss_pred HHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhh
Q 010358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (512)
Q Consensus 145 l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~ 224 (512)
+..++.+++.+. .+...+++.|++.|++.+...+...++++|.+|+++
T Consensus 89 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 136 (406)
T PRK11551 89 LFGLFSLATAQA----------------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL---- 136 (406)
T ss_pred HHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH----
Confidence 888877766665 467788899999999999999999999999999877
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 010358 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (512)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~ 276 (512)
|++++++++....+|+.+++.+++.+.+..+|++.|++.+++.++.+++.
T Consensus 137 --r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK11551 137 --RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLL 186 (406)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888999999998776555444433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-18 Score=182.61 Aligned_cols=180 Identities=15% Similarity=0.062 Sum_probs=152.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 010358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (512)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~ 146 (512)
+|..+..+.+..++..+....+...+|. +.+++|.+..+.+++.+.|.++...+.+++|+++||+ |||+++.++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~-i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~ 81 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPT-LSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLF 81 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 5667777778888888877666665554 4678999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCC-CCChhhhh
Q 010358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD-ERSKDYKT 225 (512)
Q Consensus 147 ~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~-~~~~~~~~ 225 (512)
.++.++++++ .+...++++|++.|+|.++..+.....+.+.++ +++
T Consensus 82 ~~~~~~~~~a----------------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~----- 128 (495)
T PRK14995 82 GLASLAAAFS----------------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ----- 128 (495)
T ss_pred HHHHHHHHHc----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-----
Confidence 9999988876 578889999999999999988888888878774 444
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhccc
Q 010358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (512)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~ 282 (512)
|+++++++....++|..+||.+++++.++.||||.|++...+.++.+++.....++
T Consensus 129 -r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~ 184 (495)
T PRK14995 129 -RNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPR 184 (495)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999998776665555544444443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-18 Score=175.52 Aligned_cols=155 Identities=13% Similarity=0.104 Sum_probs=123.4
Q ss_pred HHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCC
Q 010358 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (512)
Q Consensus 88 v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~ 167 (512)
........+.+++|++..+.+++.+.+..++.++.++.|+++||+ |||+++..+......+.+.....
T Consensus 9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~----------- 76 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGRLLDP----------- 76 (368)
T ss_pred HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHHh-----------
Confidence 334456666789999999999999999999999999999999998 99988765554444433222211
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhH
Q 010358 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (512)
Q Consensus 168 ~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~ 247 (512)
.+...++++|++.|+|.+.. .+.....+|.+|+++ |++++++++.+..+|..+++.
T Consensus 77 -----------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~ 132 (368)
T TIGR00903 77 -----------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALA 132 (368)
T ss_pred -----------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999864 455556689999877 999999999999999999999
Q ss_pred HHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 248 LVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 248 i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
+++++.+.+|||+.|.+.+++.++..+++..
T Consensus 133 ~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 133 AGLKIYTAGGLQLLIIPIAAVAAAGIILVLA 163 (368)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999877665555444433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-18 Score=175.82 Aligned_cols=167 Identities=20% Similarity=0.262 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Q 010358 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (512)
Q Consensus 75 ~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~ 154 (512)
++..++..+....+...++.++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++..++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence 3455666666666666666688999999999999999999999999999999999997 999999999999998855555
Q ss_pred hhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHH
Q 010358 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (512)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~ 234 (512)
++ .+...+++++++.|++.+...+...+++.|.+|+++ |++.++++
T Consensus 81 ~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~ 126 (352)
T PF07690_consen 81 FA----------------------------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGIL 126 (352)
T ss_dssp HH----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHH
T ss_pred hh----------------------------hhHHHHhhhccccccccccccccccccccccchhhh------hhhccccc
Confidence 43 234588999999999999999999999999999988 99999999
Q ss_pred HHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 010358 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (512)
Q Consensus 235 ~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~ 276 (512)
+...++|..++|.+++++.+..||++.|++.++..++..++.
T Consensus 127 ~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 127 SAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILF 168 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhH
Confidence 999999999999999999999999999999888887776643
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-17 Score=176.33 Aligned_cols=178 Identities=12% Similarity=0.036 Sum_probs=151.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 010358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (512)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ 147 (512)
.+.++.+.+..++..+..+.+.+.++.|.. ++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence 346677778888888888888887777765 6999999999999999999999999999999998 99999999988888
Q ss_pred HHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhh
Q 010358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (512)
Q Consensus 148 ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (512)
++.+++.++ .+...++++|++.|++.+...+...+.+.|.+|+++ |
T Consensus 87 ~~~~~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~ 132 (471)
T PRK10504 87 LGSLFCALS----------------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------Y 132 (471)
T ss_pred HHHHHHHHh----------------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------H
Confidence 887776654 456778899999999999999999999999998766 8
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 010358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (512)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~ 281 (512)
++.+++++...++|..++|.+++++.+..||++.|++......+..++.....+
T Consensus 133 ~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 133 MAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999877766555555444333
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-17 Score=172.74 Aligned_cols=172 Identities=13% Similarity=0.034 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
.++.+.+..++..++.....+.++.|+.+++|.+..+.+++.+.+.+...++.++.|+++||+ ||||++.++.++..++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~ 94 (392)
T PRK12382 16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLA 94 (392)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHH
Confidence 445555566666677766777888899999999999999999999999999999999999998 9999999998877766
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
.+...+....+.. . ..+...++++|++.|++.+...+...+.+.|.+|+++ |++
T Consensus 95 ~~~~~~~~~~~~~-~-------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 148 (392)
T PRK12382 95 GLAYLLAAILPVS-A-------------------PFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGK 148 (392)
T ss_pred HHHHHhhhccccc-h-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cch
Confidence 5443332111100 0 1467788999999999999888888889999999877 999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHH
Q 010358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~ 268 (512)
+++++..+.++|..++|.+++++.+..||++.+.+..+.
T Consensus 149 a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~ 187 (392)
T PRK12382 149 VMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVL 187 (392)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 999999999999999999999999999999877655443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-17 Score=174.28 Aligned_cols=166 Identities=16% Similarity=0.187 Sum_probs=144.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 010358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (512)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l 145 (512)
.+|+.+....+..+...+..+.+ .++..++.+++|.+..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~ 92 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVA 92 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence 34556666666666666666544 4556677889999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhh
Q 010358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (512)
Q Consensus 146 ~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (512)
..++.++.+++ .+...++++|++.|+|.+...+....++.|.+|+++
T Consensus 93 ~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~----- 139 (426)
T PRK12307 93 YSVGTGLSGLA----------------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL----- 139 (426)
T ss_pred HHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH-----
Confidence 99998887776 567889999999999999999999999999999887
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHH
Q 010358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 267 (512)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~ 267 (512)
|+++.+++..+..+|.++++.+.+++.+..|||+.|++.++
T Consensus 140 -r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 140 -KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL 180 (426)
T ss_pred -hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999987544
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-17 Score=173.64 Aligned_cols=170 Identities=10% Similarity=0.041 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~i 148 (512)
+..+..++..++..+..+.+...++.+ .+++|++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.++..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHH
Confidence 344444455555555555555555555 456999999999999999999999999999999998 999999999999998
Q ss_pred HHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhh
Q 010358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (512)
Q Consensus 149 g~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (512)
+.+++.++ .+...+++.|++.|++.|...+...+++.|++|+++ |+
T Consensus 101 ~~~~~~~~----------------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg 146 (434)
T PRK11663 101 INILFGFS----------------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RG 146 (434)
T ss_pred HHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HH
Confidence 88877765 567788888999999999888999999999999877 99
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHH
Q 010358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (512)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i 274 (512)
+.+++++.+.++|+.++|.+.+++.+.+|||+.|++.++..++..+
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~ 192 (434)
T PRK11663 147 GWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGL 192 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987766544433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-17 Score=172.26 Aligned_cols=176 Identities=10% Similarity=-0.039 Sum_probs=147.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 010358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (512)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ 147 (512)
++.+..+....+...++.....+.++.|+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+++.
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~ 92 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCA 92 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHH
Confidence 34666777788888888877788899999999999999999999999999999999999999998 99999999999888
Q ss_pred HHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhh
Q 010358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (512)
Q Consensus 148 ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (512)
++.+.+.++...... + ..+...+++.|++.|++.+...+...+.+.|.+|+++ |
T Consensus 93 ~~~~~~~~~~~~~~~-~-------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r 146 (399)
T PRK05122 93 LSGLLYLLAGLLAAW-P-------------------VLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------T 146 (399)
T ss_pred HHHHHHHHhhhhhcc-c-------------------hhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------h
Confidence 876666554211000 0 0246678899999999999999999999999999887 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHH
Q 010358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (512)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~ 270 (512)
++.++++..+.++|..++|.+++++.+..||++.+++.++..+
T Consensus 147 ~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~ 189 (399)
T PRK05122 147 GRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLAL 189 (399)
T ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877655443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=171.97 Aligned_cols=154 Identities=19% Similarity=0.180 Sum_probs=136.9
Q ss_pred HHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcc
Q 010358 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (512)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~ 169 (512)
.....++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~------------- 79 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFA------------- 79 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHH-------------
Confidence 3445668889999999999999999999999999999999998 99999999999988888888776
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHH
Q 010358 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (512)
Q Consensus 170 ~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~ 249 (512)
.+...++++|++.|++.+...+...+++.|.+|+++ |++.++++....++|..++|.++
T Consensus 80 ---------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~ 138 (399)
T TIGR00893 80 ---------------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLV 138 (399)
T ss_pred ---------------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHH
Confidence 467889999999999999999999999999999877 99999999999999999999999
Q ss_pred HhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 250 VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 250 ~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
+++.+..+|++.|++.++..++..++..+
T Consensus 139 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 139 GWILIHFSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999887776655554443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-17 Score=168.61 Aligned_cols=175 Identities=13% Similarity=0.118 Sum_probs=149.2
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010358 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (512)
Q Consensus 63 ~~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~ 142 (512)
..|..|+.+..+.+..++.....|.....++. +.+++|++..+.+...+.+..+..++.++.|+++||+ |||+++.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~ 91 (394)
T PRK10213 14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILF 91 (394)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHH
Confidence 33446777666666666666666665555555 5568999999999999999999999999999999998 999999999
Q ss_pred HHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChh
Q 010358 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (512)
Q Consensus 143 ~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~ 222 (512)
.++..++.+++.++ .+.+.+++.|++.|++.+...+...+++.|.+|+++
T Consensus 92 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~-- 141 (394)
T PRK10213 92 AVLLTLSCLLVSFA----------------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT-- 141 (394)
T ss_pred HHHHHHHHHHHHHH----------------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH--
Confidence 99999888877765 578899999999999999999999999999999877
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHH
Q 010358 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (512)
Q Consensus 223 ~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~ 273 (512)
|+.+++++..+.++|..++|.+++++.+.+||++.|++.+++.++.+
T Consensus 142 ----~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 142 ----VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998776554433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-17 Score=176.04 Aligned_cols=176 Identities=16% Similarity=0.130 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
.+..+.+..++..+....+. ....++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVN-VAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 34445555566666654444 445566778999999999999999999999999999999998 9999999999999999
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
.++++.+ .+...++++|++.|++.+...+...+++.|.+|+++ |++
T Consensus 81 ~~~~~~~----------------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~ 126 (485)
T TIGR00711 81 SLLCGVA----------------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGR 126 (485)
T ss_pred HHHHhCc----------------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHH
Confidence 8888765 467788999999999999999999999999999877 999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 010358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~ 281 (512)
++++++....+|..++|.+++++.++.||++.|++.+...++.+++..+..+
T Consensus 127 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 178 (485)
T TIGR00711 127 AMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILP 178 (485)
T ss_pred HHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999877766555554444333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-17 Score=168.93 Aligned_cols=175 Identities=16% Similarity=0.114 Sum_probs=143.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 010358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (512)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l 145 (512)
.+|+.+....+..+...+..+ .......++.+++|.+..+.+.+.+.+..+..++.++.|+++||+ |||+++.++.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~ 91 (398)
T TIGR00895 14 YQWRAIILSFLIMLMDGYDLA-AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILL 91 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHH
Confidence 345555555555555555554 334456677788999999999999999999999999999999998 999999999988
Q ss_pred HHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhh
Q 010358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (512)
Q Consensus 146 ~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (512)
..++.+++... .+...+++.+++.|++.+...+...++++|.+|+++
T Consensus 92 ~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----- 138 (398)
T TIGR00895 92 FSVFTLLCALA----------------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF----- 138 (398)
T ss_pred HHHHHHHHHHc----------------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh-----
Confidence 88887777664 456778889999999999999999999999999877
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 010358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (512)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~ 276 (512)
|++.++++..+..+|..+++.+++++.+..||++.|++.+++.++..++.
T Consensus 139 -r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 188 (398)
T TIGR00895 139 -RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLL 188 (398)
T ss_pred -hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999998765544444433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-16 Score=162.73 Aligned_cols=179 Identities=13% Similarity=0.146 Sum_probs=161.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 010358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (512)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~ 146 (512)
.|..++.+.+..|+....-+.... +.+-+.+++|.+...++..++.|..+..++.|+...++||+ .||++++....++
T Consensus 11 ~~~~l~aLa~~~F~igttEfv~~g-LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~lF 88 (394)
T COG2814 11 MWLALLALALAAFAIGTTEFVPVG-LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLALF 88 (394)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHh-chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHHH
Confidence 466777777777777766665555 45566789999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 147 ~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
+++.++.+++ .++..+.++|++.|+..|.+++...+..+++.|+++
T Consensus 89 i~~n~l~alA----------------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------ 134 (394)
T COG2814 89 IVSNLLSALA----------------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------ 134 (394)
T ss_pred HHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------
Confidence 9999999998 689999999999999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 010358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (512)
Q Consensus 227 r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~ 281 (512)
|+++.+..+.+..+..++|..++.++.|.+|||+.|++.+++.+++++..+...|
T Consensus 135 ~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 135 RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999988888777777666555
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-17 Score=169.28 Aligned_cols=172 Identities=13% Similarity=0.093 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 010358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (512)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~ 150 (512)
...+.+.+++..+....+.+.++. +.+++|.+..+.+...+.+.++..++.++.|+++||+ |||+++.++.++..++.
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~ 92 (406)
T PRK15402 15 PLCLVLFEFATYIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTC 92 (406)
T ss_pred HHHHHHHHHHHHhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHH
Confidence 333344444444455445555444 5678999999999999999999999999999999998 99999999998888887
Q ss_pred HHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhH
Q 010358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (512)
Q Consensus 151 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~ 230 (512)
+++..+ .+...+++.|++.|++.+...+...+.+.|.+|+++ |.+.
T Consensus 93 ~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~ 138 (406)
T PRK15402 93 LAILLA----------------------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKI 138 (406)
T ss_pred HHHHHH----------------------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHH
Confidence 777665 456778889999999998888888999999999877 8888
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 231 ~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
+++++....+|..++|.+++++.+..+|++.|++.++..++..+....
T Consensus 139 ~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK15402 139 TALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWR 186 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999999999999999999999877776665554433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-16 Score=163.22 Aligned_cols=176 Identities=18% Similarity=0.177 Sum_probs=146.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 010358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (512)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~ 146 (512)
+++.++.+.+..+...++.....+. .+++.+++|.+..+.+++.+.+..+..++.++.|+++||+ |||+++.++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~ 80 (385)
T TIGR00710 3 AKAFALLLGCLSILGPLGIDMYLPA-FPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF 80 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 3444455555555555555444444 4456778999999999999999999999999999999998 9999999999988
Q ss_pred HHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 147 ~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
.++.+++... .+...+++.+++.|++.+...+...+++.|.+|+++
T Consensus 81 ~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------ 126 (385)
T TIGR00710 81 ALSSLGLALS----------------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------ 126 (385)
T ss_pred HHHHHHHHHH----------------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------
Confidence 8888877765 466788899999999999999999999999999777
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 227 r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
|++.+++++....+|..++|.+++++.+..||++.|++.++..++..+....
T Consensus 127 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 127 LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999877766655554444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-17 Score=167.85 Aligned_cols=153 Identities=13% Similarity=0.059 Sum_probs=133.6
Q ss_pred HHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCccc
Q 010358 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (512)
Q Consensus 91 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~ 170 (512)
....++.+++|++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.++..++.++++++
T Consensus 16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~-------------- 80 (379)
T TIGR00881 16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFS-------------- 80 (379)
T ss_pred hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHh--------------
Confidence 345678889999999999999999999999999999999998 99999999999999988888776
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHh-HHH
Q 010358 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF-TLV 249 (512)
Q Consensus 171 ~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p-~i~ 249 (512)
.+...+++.|++.|++.+...+...++++|.+|+++ |++.+++++.+.++|..++| .++
T Consensus 81 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~ 140 (379)
T TIGR00881 81 --------------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVL 140 (379)
T ss_pred --------------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHH
Confidence 467788899999999999999999999999999877 99999999999999999999 577
Q ss_pred HhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 250 VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 250 ~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
+.+.+..+|++.|++.+++.++..++.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 141 FGIAELYSWHWVFIVPGIIAIIVSLICFL 169 (379)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHhe
Confidence 77778889999998877766554444433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-16 Score=166.84 Aligned_cols=176 Identities=16% Similarity=0.158 Sum_probs=128.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhc--CCChhHHHHHH-----HHHHHHHHHHHHHHHHHHhhccchHHH
Q 010358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--HKSFADSSNAV-----NNFLGISQASSVLGGFLADAYLGRYWT 138 (512)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l--~~s~~~a~~~~-----~~~~~~~~l~~l~~G~LsD~~~GR~~~ 138 (512)
.+++.+....+..+++.+.+..+....+.++.+++ +.++.. +.+. .+..++..++.++.|+++||+ |||++
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~ 96 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRM 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHH
Confidence 34566666666777777766554444455666665 666653 3332 223344567788889999998 99999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCC
Q 010358 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (512)
Q Consensus 139 i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~ 218 (512)
+.++.+++.++.++++++....... ......+++.|++.|++.|+..+....++.|.+|+
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~ 156 (438)
T PRK09952 97 LMLTVWMMGIATALIGLLPSFSTIG--------------------WWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPK 156 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHH--------------------HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCC
Confidence 9999999999988888861100000 01123578899999999999999999999999998
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhh--------hccchHHHHHHHHHHH
Q 010358 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAM 269 (512)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~--------~~~gw~~~f~i~~~~~ 269 (512)
++ |+...+....+..+|..++..+..++. +.+|||+.|++.++..
T Consensus 157 ~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~ 209 (438)
T PRK09952 157 NK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLV 209 (438)
T ss_pred CC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHH
Confidence 87 888888888888899888877766654 3579999999876654
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-17 Score=166.26 Aligned_cols=156 Identities=14% Similarity=0.053 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCC
Q 010358 85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164 (512)
Q Consensus 85 ~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~ 164 (512)
.|.. ..+.+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++
T Consensus 19 ~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~-------- 88 (377)
T TIGR00890 19 VYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIA-------- 88 (377)
T ss_pred Hhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHH--------
Confidence 4443 4467788899999999999999999999999999999999998 99999999999999998888776
Q ss_pred CCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHH
Q 010358 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 244 (512)
Q Consensus 165 ~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l 244 (512)
.+...++++|++.|++.+...+.....+.+.+| ++ |+...+++..+.++|..+
T Consensus 89 --------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~ 141 (377)
T TIGR00890 89 --------------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFI 141 (377)
T ss_pred --------------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhH
Confidence 577888999999999999888888888888886 34 889999999999999988
Q ss_pred HhHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Q 010358 245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (512)
Q Consensus 245 ~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~ 277 (512)
++.+.+.+.+..|||+.|++.++..++..+..+
T Consensus 142 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 174 (377)
T TIGR00890 142 LSPLITSVINLEGVPAAFIYMGIIFLLVIVLGA 174 (377)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 777777777888999999988877665554443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.1e-17 Score=169.22 Aligned_cols=172 Identities=19% Similarity=0.163 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 010358 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (512)
Q Consensus 74 i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l 153 (512)
++...++..++.......++.++ ++++.+..+.+++.+.+.+...++.++.|+++||+ |||+++.++.++..++.+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~ 99 (417)
T PRK10489 22 VFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGL 99 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHH
Confidence 33345555555544445555554 56778999999999999999999999999999998 99999998888777766655
Q ss_pred hhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHH
Q 010358 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (512)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~ 233 (512)
+..... .. .+...+++.+++.|++.+...+...+.+.|.+|+++ |+++.++
T Consensus 100 ~~~~~~----~~-------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 150 (417)
T PRK10489 100 ALNAFL----PE-------------------PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAI 150 (417)
T ss_pred HHHHHc----CC-------------------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHH
Confidence 432110 00 356677888999999988888888899999998776 8999999
Q ss_pred HHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 010358 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (512)
Q Consensus 234 ~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~ 276 (512)
++...++|..+||.+++++.+..||++.|++.++..+++.+..
T Consensus 151 ~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 151 TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998999999988776665554443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-16 Score=165.72 Aligned_cols=152 Identities=12% Similarity=0.099 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCC
Q 010358 85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164 (512)
Q Consensus 85 ~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~ 164 (512)
++.+.+. .+.+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++..++.++.++++++
T Consensus 25 ~~~~~~~-lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a-------- 94 (393)
T PRK09705 25 LTSVGPL-LPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELY-------- 94 (393)
T ss_pred hhccchh-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHC--------
Confidence 3444444 4456789999999999999999999999999999999998 99999999999999999999887
Q ss_pred CCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHH
Q 010358 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 244 (512)
Q Consensus 165 ~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l 244 (512)
.++..++++|++.|+|.+...+.....+.+.+| ++ |+.+++.+..+.++|..+
T Consensus 95 --------------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~ 147 (393)
T PRK09705 95 --------------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGL 147 (393)
T ss_pred --------------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999999987 55 899999999999999999
Q ss_pred HhHHHHhhhhcc-chHHHHHHHHHHHHHHH
Q 010358 245 AFTLVVYIQMEH-GWGSAFGALAIAMGISN 273 (512)
Q Consensus 245 ~p~i~~~l~~~~-gw~~~f~i~~~~~~i~~ 273 (512)
++.+++++.++. +||+.+.+.++..++.+
T Consensus 148 g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~ 177 (393)
T PRK09705 148 GAAITPWLVQHSETWYQTLAWWALPAVVAL 177 (393)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 999999988875 89998876555444333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-16 Score=162.15 Aligned_cols=174 Identities=7% Similarity=0.055 Sum_probs=144.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 010358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (512)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l 145 (512)
+|+|..+...+..++.....+.+...++. +.+++|++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~ 81 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 46677777777777776666555555444 5678999999999999999999999999999999998 999999999998
Q ss_pred HHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhh
Q 010358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (512)
Q Consensus 146 ~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (512)
..++.+++.+. .+...+++.|++.|++.+...+...+.+.|.+|+++
T Consensus 82 ~~i~~~l~~~~----------------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~----- 128 (394)
T PRK03699 82 MILAVAGLMFS----------------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ----- 128 (394)
T ss_pred HHHHHHHHHHc----------------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch-----
Confidence 88888877765 467788899999999999888888999999998876
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHhhhh-ccchHHHHHHHHHHHHHHHHH
Q 010358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNML 275 (512)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~l~p~i~~~l~~-~~gw~~~f~i~~~~~~i~~i~ 275 (512)
|+..++..+....+|+.++|.+.+++.. ..|||+.|.+.++..++.+++
T Consensus 129 -r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 129 -RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 8899888888889999999999888754 579999999877665554443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-16 Score=168.09 Aligned_cols=175 Identities=18% Similarity=0.134 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhH-HHH-----HHHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Q 010358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-SSN-----AVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (512)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~-a~~-----~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~ 141 (512)
++.++...+..+++.+-+. +..+...++.++++.+... ... +.++..++..++.+++|+++||+ |||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 4455566667777777664 4556677888888643322 111 24666678889999999999998 99999999
Q ss_pred HHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCCh
Q 010358 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (512)
Q Consensus 142 ~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~ 221 (512)
+.+++.++.++++++..+..+. -.....++++|++.|+|.|+..++..++++|.+|+++
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~~g--------------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~- 151 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYATIG--------------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK- 151 (490)
T ss_pred HHHHHHHHHHHHHhcccHHHHH--------------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-
Confidence 9999999999988861100000 0011247899999999999999999999999999888
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhh--------hccchHHHHHHHHHHHH
Q 010358 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMG 270 (512)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~--------~~~gw~~~f~i~~~~~~ 270 (512)
|+...++...+..+|..+++.+...+. ..+|||+.|++.++..+
T Consensus 152 -----Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 152 -----RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 899988888888888877776554432 26799999998665433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-16 Score=164.90 Aligned_cols=177 Identities=16% Similarity=0.208 Sum_probs=129.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcC---CChhHHHHHHHHH---HHHHHHHHHHHHHHHhhccchHHHHH
Q 010358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH---KSFADSSNAVNNF---LGISQASSVLGGFLADAYLGRYWTIA 140 (512)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~---~s~~~a~~~~~~~---~~~~~l~~l~~G~LsD~~~GR~~~i~ 140 (512)
+++.+....+..+++.+.+.. ...+..++.++++ .+..+.+.+...+ ..+..++.+++|+++||+ |||+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~ 97 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSML 97 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHH
Confidence 333444444556666766644 5566778888874 4555443333333 344458999999999998 9999999
Q ss_pred HHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCC
Q 010358 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (512)
Q Consensus 141 ~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~ 220 (512)
++.+++.++.++++++....... ......+++.|++.|+|.|+..+...++++|.+|+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 157 (432)
T PRK10406 98 ISVCMMCFGSLVIACLPGYETIG--------------------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR 157 (432)
T ss_pred HHHHHHHHHHHHHhhcCCchhHH--------------------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence 99999999998887751100000 0234568899999999999999999999999999887
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhh--------hccchHHHHHHHHHHHHH
Q 010358 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGI 271 (512)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~--------~~~gw~~~f~i~~~~~~i 271 (512)
|+.+.++.+.+.++|..+++.+...+. ..+|||+.|++.++..++
T Consensus 158 ------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll 210 (432)
T PRK10406 158 ------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV 210 (432)
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence 899999888888888888877655543 257999999987665543
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-16 Score=170.89 Aligned_cols=152 Identities=16% Similarity=0.193 Sum_probs=122.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCC
Q 010358 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180 (512)
Q Consensus 101 ~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~ 180 (512)
+.+..+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.+..++.........
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~---------------- 113 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTSIG---------------- 113 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhcccccccc----------------
Confidence 88889999999999999999999999999998 9999999999998888777665311000000
Q ss_pred CcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhh-------
Q 010358 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ------- 253 (512)
Q Consensus 181 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~------- 253 (512)
.++......++++|++.|++.|+..+...++++|++|+++ |+.+++++..+..+|..+++.++..+.
T Consensus 114 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 187 (479)
T PRK10077 114 PDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASW 187 (479)
T ss_pred ccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 0111345678899999999999999999999999999887 999999999999999999887765543
Q ss_pred -hccchHHHHHHHHHHHHHHHHH
Q 010358 254 -MEHGWGSAFGALAIAMGISNML 275 (512)
Q Consensus 254 -~~~gw~~~f~i~~~~~~i~~i~ 275 (512)
+..|||+.|++.++..++.++.
T Consensus 188 ~~~~gWr~~f~~~~~~~~~~~~~ 210 (479)
T PRK10077 188 LNTDGWRYMFASEAIPALLFLML 210 (479)
T ss_pred cccCChHHHHHHHHHHHHHHHHH
Confidence 4579999999877666555443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-16 Score=171.76 Aligned_cols=179 Identities=15% Similarity=0.113 Sum_probs=133.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-----cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Q 010358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (512)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~-----l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~ 141 (512)
+++.+..+.+..+...+....+....+ .+..+ .+.+..+.+++.+.+.++..++.+++|+++||+ |||+++.+
T Consensus 14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~ 91 (502)
T TIGR00887 14 HFRAIVIAGVGFFTDSYDLFCISLVTK-MLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGM 91 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHH
Confidence 444555555555555555433333333 33332 234556678889999999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCCh
Q 010358 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (512)
Q Consensus 142 ~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~ 221 (512)
+.+++.++.++.+++.. ..+ ..+...++++|++.|++.|+..+....+++|.+|++.
T Consensus 92 ~~~~~~v~~~~~~~~~~---~~~-------------------~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~- 148 (502)
T TIGR00887 92 ELIIMIIATVASGLSPG---SSP-------------------KSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW- 148 (502)
T ss_pred HHHHHHHHHHHHHHccC---ccc-------------------chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh-
Confidence 99999998887776511 000 0236789999999999999999999999999999988
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhh-----------------------ccchHHHHHHHHHHHHHHHHH
Q 010358 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----------------------EHGWGSAFGALAIAMGISNML 275 (512)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~-----------------------~~gw~~~f~i~~~~~~i~~i~ 275 (512)
|+++.++++....+|..+++.+..++.. ..+||+.|.+.++..++.++.
T Consensus 149 -----Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~ 220 (502)
T TIGR00887 149 -----RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF 220 (502)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888765432 247999998776655544443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-18 Score=176.02 Aligned_cols=178 Identities=19% Similarity=0.232 Sum_probs=160.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 010358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (512)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l 145 (512)
..++.+..+.++.+++++--|.+.. ...-+.+.+|.++...+++.+.+.+...+..|+.|+|+||| .|++++.+|.++
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~i 107 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFI 107 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHH
Confidence 3456788888999999999987765 45667888999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhh
Q 010358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (512)
Q Consensus 146 ~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (512)
+.+.++..+++ ..++++.+.|.+.|+|.+.+.+..+++++|.||++.
T Consensus 108 W~~Av~~~~fs----------------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~----- 154 (493)
T KOG1330|consen 108 WTLAVFASGFS----------------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK----- 154 (493)
T ss_pred HHHHHHHHHHH----------------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh-----
Confidence 99999999887 678999999999999999999999999999999988
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHhhhhccc-hHHHHHHHHHHHHHHHHHHHhh
Q 010358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 279 (512)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~i~~~~~ 279 (512)
|++.++++|+++++|.++|.++++++.+..+ |||+|.+.+++.++..++.++.
T Consensus 155 -Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f 208 (493)
T KOG1330|consen 155 -RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLF 208 (493)
T ss_pred -hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhh
Confidence 9999999999999999999999999998887 9999999888876665555443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.6e-16 Score=160.88 Aligned_cols=172 Identities=12% Similarity=-0.012 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhH-----HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-----SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~-----a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~ 144 (512)
....+....++..++++...+.++.|++ ++|.+..+ .+.+.+.+.+...++.++.|+++||+ |||+++.++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 92 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSAL 92 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHH
Confidence 4455566777778888777788888885 58887654 37788888899999999999999998 99999999988
Q ss_pred HHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhh
Q 010358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (512)
Q Consensus 145 l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~ 224 (512)
+..++.+++... .+...+++.+++.|++.+ ..+.....+.|.+|+++
T Consensus 93 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~---- 139 (408)
T PRK09874 93 GMGIVMVLMGLA----------------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK---- 139 (408)
T ss_pred HHHHHHHHHHHH----------------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh----
Confidence 888887776654 467788889999998755 45777788889998777
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
|++.+++++...++|..++|.+++++.+..+|++.|++.+++.++..++...
T Consensus 140 --~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (408)
T PRK09874 140 --SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLF 191 (408)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999888776655554433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-16 Score=159.00 Aligned_cols=170 Identities=19% Similarity=0.248 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 010358 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (512)
Q Consensus 73 ~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~ 152 (512)
.+....++..+..+......+.|. +++|.+..+.+.+.+....+..++.++.|+++||+ |||+.+.++.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHH
Confidence 445566777777777777777776 46799999999999999999999999999999998 9999999999999998888
Q ss_pred HhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHH
Q 010358 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (512)
Q Consensus 153 l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~ 232 (512)
+... .+...+++++++.|++.+...+...+++.|.+|+++ |++.++
T Consensus 81 ~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 126 (352)
T cd06174 81 LAFA----------------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALG 126 (352)
T ss_pred HHHh----------------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhh
Confidence 7775 467788999999999999999999999999999877 999999
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 233 ~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
+.+...++|..++|.+++++.+..+|++.|++.++..++..++...
T Consensus 127 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (352)
T cd06174 127 LFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF 172 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888777666555444
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-16 Score=168.07 Aligned_cols=167 Identities=14% Similarity=0.216 Sum_probs=144.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 010358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (512)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l 145 (512)
.+|+.+..+.+..++..+..+.+. .+..++.+++|++..+++...+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 94 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLIT-LVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence 456666666666677666665444 455677789999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhh
Q 010358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (512)
Q Consensus 146 ~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (512)
..++.+++.+. .+...+++++++.|++.++..+...+++.|.+|+++
T Consensus 95 ~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----- 141 (496)
T PRK03893 95 FSVGTLACGFA----------------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL----- 141 (496)
T ss_pred HHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-----
Confidence 98888887775 567888999999999999999999999999999877
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHH
Q 010358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (512)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~ 268 (512)
|+..+++++.+.++|..++|.+.+++.+..||++.|++.++.
T Consensus 142 -r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 142 -RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.1e-16 Score=159.00 Aligned_cols=169 Identities=11% Similarity=0.055 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHH-HHHHHHHHHHHH
Q 010358 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI-FTTIYLAGLTGI 153 (512)
Q Consensus 75 ~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~-~~~l~~ig~~~l 153 (512)
.+..++..++.....+.++.|+.+++|.+..+.+.+.+.+.+...+..++.|+++||+ ||||.+++ +.++..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence 3456677777777888899999999999999999999999999999999999999998 99887655 444445555555
Q ss_pred hhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh--HH
Q 010358 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR--FF 231 (512)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~--~~ 231 (512)
+.+ .+...+++.+++.+.+.+...|...++..|..+++. |.. ..
T Consensus 82 ~~~----------------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~ 127 (375)
T TIGR00899 82 AWN----------------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFS 127 (375)
T ss_pred Hhc----------------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHH
Confidence 554 456677778888887777777888888888776554 443 35
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
++.+...++|..++|.+++++.+..|||+.|++.++..++..++.++
T Consensus 128 ~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 128 SVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 67778889999999999999999999999999888766555544433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.8e-16 Score=160.47 Aligned_cols=173 Identities=14% Similarity=0.107 Sum_probs=141.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 010358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (512)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~ 146 (512)
.+|..+.+....++..+..+...+.+ .++.+++|.+..+.+++.+.+.....++.++.|+++||+ |||+++.++.++.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAI-ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 45556666666666666655444444 455678999999999999999999999999999999998 9999999999888
Q ss_pred HHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 147 ~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
.++.+++... .+...+++.|++.|++.+...+....+..|.++.++
T Consensus 84 ~~~~~~~~~~----------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 129 (394)
T PRK11652 84 ILGTLVALFA----------------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------ 129 (394)
T ss_pred HHHHHHHHHH----------------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------
Confidence 8887777664 456788899999999988877877888889888766
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHH
Q 010358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (512)
Q Consensus 227 r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~ 275 (512)
++...+++..+..++..++|.+++++.+..||++.|++.++..++..++
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~ 178 (394)
T PRK11652 130 LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999899999999877665544433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-15 Score=158.44 Aligned_cols=171 Identities=13% Similarity=0.103 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
.++.+.+..+...+..+.+.+.++ .+.+++|.+..+.+...+.+..+..++.++.|+++||+ |||+++.++.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~ 81 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVLT-ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVIG 81 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhChH-HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHH
Confidence 556666777777777766666554 45678999999999999999999999999999999998 9999999999999998
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
.++++.+ .+.+.+++.|++.|++.+...+....++.|.+++++ |++
T Consensus 82 ~~l~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~ 127 (382)
T PRK10091 82 NAMFTLS----------------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTA 127 (382)
T ss_pred HHHHHHh----------------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhH
Confidence 8888776 567889999999999999888888888999998766 888
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 010358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~ 276 (512)
.++++..+..+|..++|.+++++.+..|||+.|++.++..++..+..
T Consensus 128 ~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~ 174 (382)
T PRK10091 128 AVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASI 174 (382)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887665554433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-15 Score=157.20 Aligned_cols=148 Identities=15% Similarity=0.094 Sum_probs=130.3
Q ss_pred hhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccc
Q 010358 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175 (512)
Q Consensus 96 l~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~ 175 (512)
+.+++|.+..++++.++.+..+..++.+++|+++||+ |||+++.++.+++.++.+++..+
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a------------------- 101 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFT------------------- 101 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHc-------------------
Confidence 6778999999999999999999999999999999998 99999999999998888887775
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhc
Q 010358 176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 255 (512)
Q Consensus 176 ~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~ 255 (512)
.+...++++|++.|++.+...+...+.+.|.+|+++ +.+.+++++...++|..+||.+++++.+.
T Consensus 102 ---------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~ 166 (413)
T PRK15403 102 ---------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHF 166 (413)
T ss_pred ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999988766777788899999877 88999999999999999999999999988
Q ss_pred cchHHHHHHHHHHHHHHHHHHHh
Q 010358 256 HGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 256 ~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
.|||+.|++.++..+++++..+.
T Consensus 167 ~gw~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 167 VHWKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888776666554333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-15 Score=159.34 Aligned_cols=175 Identities=12% Similarity=0.069 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHH-HHHHHHHHHHHHHhhccchHHHHH-HHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIA-IFTTIYL 147 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~-~~~l~~l~~G~LsD~~~GR~~~i~-~~~~l~~ 147 (512)
..+..+...++..++...+.+.++.|+++++|.+.++.+++.+.+.. ...++++++|+ +||+ ||||.++ .+.++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~ 93 (393)
T PRK15011 16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGV 93 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHH
Confidence 45666667888888888888999999999999999999998776544 55566666666 9998 9988754 4555444
Q ss_pred HHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhh
Q 010358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (512)
Q Consensus 148 ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (512)
++..+++++ .+...+++.+.+.+...+...+...++..|..++++. ..
T Consensus 94 ~~~~~~~~~----------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 141 (393)
T PRK15011 94 LACTLFAWN----------------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGR----EA 141 (393)
T ss_pred HHHHHHHHh----------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccc----hH
Confidence 555555554 3455554444444444445677777777777665430 02
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
+...++.+.+.++|.+++|.+++++.++.|||+.|++.++..++..+....
T Consensus 142 ~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 142 VMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 344467888999999999999999999999999999887766555544443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-16 Score=167.56 Aligned_cols=147 Identities=15% Similarity=0.162 Sum_probs=128.1
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCC
Q 010358 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (512)
Q Consensus 99 ~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~ 178 (512)
+++++..+.+.+.+.+..++.++.+++|+++||+ |||+++.++.++..++.+++.....
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 6889999999999999999999999999999998 9999999999888887776654311
Q ss_pred CCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhcc-c
Q 010358 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-G 257 (512)
Q Consensus 179 c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~-g 257 (512)
.+...+++.|++.|++.+...+....+++|.+|+++ |++++++++.+.++|..++|.+++++.+.. |
T Consensus 129 ------~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g 196 (465)
T TIGR00894 129 ------GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGG 196 (465)
T ss_pred ------cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 245678899999999999999999999999999888 999999999999999999999999999884 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 010358 258 WGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 258 w~~~f~i~~~~~~i~~i~~~~ 278 (512)
|++.|++.++..++..++++.
T Consensus 197 w~~~f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 197 WPMIFYVFGIVGCAWSLLWFV 217 (465)
T ss_pred CCeehhhhhHHHHHHHHHHHH
Confidence 999999888776555544443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-15 Score=157.72 Aligned_cols=172 Identities=12% Similarity=0.057 Sum_probs=138.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (512)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~ 144 (512)
-+-||.+....+..++..++.+....+++.|+ +++|.+..+++++.+.+..+..++.++.|+++||+ |||+++.++.+
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~ 86 (402)
T TIGR00897 9 IGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLL 86 (402)
T ss_pred cCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence 34556777777888888888777777888888 56899999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhh
Q 010358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (512)
Q Consensus 145 l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~ 224 (512)
+..++.+++..... .. .+...+++.|++.|+|.+...+...+.+.+.+|+++
T Consensus 87 ~~~~~~~~~~~~~~-----~~-------------------~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~---- 138 (402)
T TIGR00897 87 LWCVGHAAFIVFGL-----GH-------------------ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN---- 138 (402)
T ss_pred HHHHHHHHHHHHhc-----cC-------------------ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH----
Confidence 88887665432111 00 245667788999999888777777788889998877
Q ss_pred hhhhhHHHHHHHHHHHHH-HHHhHHHHhhhhccchHHHHHHHHHH
Q 010358 225 THLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIA 268 (512)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~-~l~p~i~~~l~~~~gw~~~f~i~~~~ 268 (512)
|++++++++.+.++|. .++|.+++++.+..||+..++.....
T Consensus 139 --~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~ 181 (402)
T TIGR00897 139 --LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF 181 (402)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 9999999999999996 68999999998888976666554443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=169.51 Aligned_cols=156 Identities=15% Similarity=0.071 Sum_probs=128.5
Q ss_pred HHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccc
Q 010358 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171 (512)
Q Consensus 92 l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~ 171 (512)
....+.+++|++..+.+++.+.+..++.++.+++|+++||+ |||+++.++.++..++.++++.....
T Consensus 51 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~------------ 117 (467)
T PRK09556 51 AQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGS------------ 117 (467)
T ss_pred hhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhc------------
Confidence 35567889999999999999999999999999999999998 99999999888877776666553110
Q ss_pred cccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHh
Q 010358 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251 (512)
Q Consensus 172 ~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~ 251 (512)
...+...+++.|++.|++.+...+....+++|++|+++ |+.+++++..+.++|+.+++.+..+
T Consensus 118 -----------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~ 180 (467)
T PRK09556 118 -----------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALW 180 (467)
T ss_pred -----------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHH
Confidence 00467889999999999999999999999999999988 9999999999999999999998887
Q ss_pred hhhcc---chHHHHHHHHHHHHHHHHHHH
Q 010358 252 IQMEH---GWGSAFGALAIAMGISNMLFF 277 (512)
Q Consensus 252 l~~~~---gw~~~f~i~~~~~~i~~i~~~ 277 (512)
+.+.. +|+..|.+.+++.++..++.+
T Consensus 181 ~~~~~~~~~~~~~f~~~g~~~~~~~i~~~ 209 (467)
T PRK09556 181 GANYFFDGHVIGMFIFPSIIALIIGFIGL 209 (467)
T ss_pred HHHhhccCcchhHHHHHHHHHHHHHHHHH
Confidence 76643 588888876666554444333
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-15 Score=157.56 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=136.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 010358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (512)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ 147 (512)
.+.++.+++..++..+....+.+.++.|+. ++|.+..+++++.+.+.++..+++++.|+++||+ |||+++.++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence 356788888888988888888888888876 5899999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhh
Q 010358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (512)
Q Consensus 148 ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (512)
++...++++ .+...++++|++.|++.+...+...+.+.+..++++ |
T Consensus 83 ~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~ 128 (381)
T PRK03633 83 AGCAGLGLM----------------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------R 128 (381)
T ss_pred HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------H
Confidence 888877765 467888899999999999988888888888888766 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHhhhhccch
Q 010358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (512)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw 258 (512)
++.+++++.+.++|..+||.+++++.+...|
T Consensus 129 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 159 (381)
T PRK03633 129 GRLLAAYMMVYYLGTVLGQLLVSKVSTELMS 159 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999998775433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-15 Score=159.63 Aligned_cols=154 Identities=10% Similarity=0.056 Sum_probs=123.4
Q ss_pred HHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCccc
Q 010358 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (512)
Q Consensus 91 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~ 170 (512)
....|+.++ |++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++++....
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~----------- 116 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA----------- 116 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhcc-----------
Confidence 345677777 99999999999999999999999999999998 99999999999888888777664110
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHH-HHhHHH
Q 010358 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI-VAFTLV 249 (512)
Q Consensus 171 ~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~-l~p~i~ 249 (512)
..+...+++.+++.|++.+...+.....+.|++|+++ |++++++++.+.++|+. ++|+++
T Consensus 117 -------------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~ 177 (452)
T PRK11273 117 -------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFL 177 (452)
T ss_pred -------------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 0256677888999999999888888888999999877 99999999999999875 455544
Q ss_pred HhhhhccchHHHHHHHHHHHHHHHHHH
Q 010358 250 VYIQMEHGWGSAFGALAIAMGISNMLF 276 (512)
Q Consensus 250 ~~l~~~~gw~~~f~i~~~~~~i~~i~~ 276 (512)
..+....|||+.|++.+++.++..++.
T Consensus 178 ~~~~~~~gw~~~f~i~~~~~~~~~~l~ 204 (452)
T PRK11273 178 LGMAWFNDWHAALYMPAFAAILVALFA 204 (452)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 334344589999998777655544433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-15 Score=161.72 Aligned_cols=151 Identities=14% Similarity=0.092 Sum_probs=125.1
Q ss_pred HHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCccccc
Q 010358 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172 (512)
Q Consensus 93 ~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~ 172 (512)
...+.+++|.+..+++++.+.+.....++.+++|+++||+ |||++++.+.++..++.++++++
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~---------------- 104 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFS---------------- 104 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHh----------------
Confidence 4455678999999999999999999999999999999997 99999999998888888777665
Q ss_pred ccccCCCCCcchhhHHHHHH-HHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHh
Q 010358 173 SQLLGSCEPAKSWQMLYLYT-VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251 (512)
Q Consensus 173 ~~~~~~c~~~~~~~~~~l~~-~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~ 251 (512)
.+...+++ .|++.|++.+...+...+.+.+.++ ++ |+++.++++.+..+|..++|.++++
T Consensus 105 ------------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~ 165 (455)
T TIGR00892 105 ------------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQY 165 (455)
T ss_pred ------------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34555554 4678899888765666677888885 45 8999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHhh
Q 010358 252 IQMEHGWGSAFGALAIAMGISNMLFFIG 279 (512)
Q Consensus 252 l~~~~gw~~~f~i~~~~~~i~~i~~~~~ 279 (512)
+.+.+|||+.|++.+++.+++.+..++.
T Consensus 166 l~~~~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 166 LFESFGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999888776655544443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-15 Score=155.69 Aligned_cols=162 Identities=14% Similarity=0.062 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 010358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (512)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~ 150 (512)
++.++...++..++...+...++. +.+++|.+....+++.+.+.+...++.+++|+++||+ |||+++.++.+++.++.
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~~ 82 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLGC 82 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHHH
Confidence 445566667766655444444444 4678999999999999999999999999999999998 99999999999988887
Q ss_pred HHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhH
Q 010358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (512)
Q Consensus 151 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~ 230 (512)
+++... .+. ++.|++.|++.+...|...+++.|.+|+++ |+++
T Consensus 83 ~~~~~~----------------------------~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a 125 (393)
T PRK11195 83 LLMLFG----------------------------IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKA 125 (393)
T ss_pred HHHHHH----------------------------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHH
Confidence 766553 222 678899999999999999999999999877 9999
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHH
Q 010358 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (512)
Q Consensus 231 ~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~ 272 (512)
.++.....++|..+||.++|++.+. .|+..+++.+...+++
T Consensus 126 ~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 126 NGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA 166 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999875 4777776655544433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-15 Score=154.74 Aligned_cols=159 Identities=16% Similarity=0.237 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHH--hhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccc
Q 010358 84 AYFGLSVNMVTF--MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 161 (512)
Q Consensus 84 ~~~~v~~~l~~y--l~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~ 161 (512)
+++....++|.+ +.+++|.+..+.+++.+.+..+..++.+++|+++||+ |||+++.++.++..++.+++...
T Consensus 18 ~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~----- 91 (401)
T PRK11043 18 GFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWV----- 91 (401)
T ss_pred HHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHh-----
Confidence 333344444444 6789999999999999999999999999999999998 99999999998888887777665
Q ss_pred cCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHH
Q 010358 162 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 241 (512)
Q Consensus 162 l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg 241 (512)
.+...++++|++.|++.+...+...+++.|.+++++ +...++..+....+|
T Consensus 92 -----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 142 (401)
T PRK11043 92 -----------------------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALS 142 (401)
T ss_pred -----------------------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHH
Confidence 456778889999999988877788889999999776 778888888888999
Q ss_pred HHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Q 010358 242 AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (512)
Q Consensus 242 ~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~ 277 (512)
..++|.+++++.+.+||++.|++.++..++..+..+
T Consensus 143 ~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 143 PALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988776665544443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.2e-15 Score=153.72 Aligned_cols=171 Identities=16% Similarity=0.120 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 010358 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (512)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~ 151 (512)
....+..+....++....+.+ ..+.+++|.+..+.+++.+.+..+..++.++.|+++||+ |||+.+.++.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~l-p~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 6 LCSFALVLLYPAGIDMYLVGL-PRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhhH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHH
Confidence 334445555555554444444 445677999999999999999999999999999999998 999999999998888887
Q ss_pred HHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHH
Q 010358 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (512)
Q Consensus 152 ~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (512)
++... .+...++++|++.|++.+...+...+++.|.+|+++ |++.+
T Consensus 84 ~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~ 129 (392)
T PRK10473 84 LCSLA----------------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVL 129 (392)
T ss_pred HHHHh----------------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHH
Confidence 77665 356678889999999999888889999999999877 99999
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
++++...++|..++|.+++++.+..||++.|++.++..++..++.+.
T Consensus 130 ~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 176 (392)
T PRK10473 130 SLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF 176 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888899999999887766555554433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.1e-17 Score=162.87 Aligned_cols=224 Identities=19% Similarity=0.142 Sum_probs=168.7
Q ss_pred ccccccchhhhhcchhhhhcCCCccC-CCCccccCCCCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhc
Q 010358 22 HQRKKLSVYFIESDNRRMALGRGYTG-GTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100 (512)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l 100 (512)
.+++|++++.|+.+|.++|+.+.+.+ +++.......-. .+...++ +-+|++.+..++..+..|++..+.|.|+.+..
T Consensus 206 ~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~-~~YVL~N-k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k 283 (448)
T COG2271 206 LRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIF-VKYVLKN-KLIWLLALANVFVYVVRYGINDWGPLYLSEVK 283 (448)
T ss_pred hCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHH-HHHHHcC-hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Confidence 46778889999888877553332210 111000000001 1222223 36899999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chHHHH-HHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCC
Q 010358 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTI-AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (512)
Q Consensus 101 ~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~-GR~~~i-~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~ 178 (512)
|++..++....+.|..+...++++.||+|||++ |||... ++++++.++..+.+..+ |.
T Consensus 284 ~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~-------~~------------- 343 (448)
T COG2271 284 GFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA-------PN------------- 343 (448)
T ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC-------CC-------------
Confidence 999999999999999999999999999999999 766544 55555555566666554 22
Q ss_pred CCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHH-HHHHHhHHHHhhhhccc
Q 010358 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHG 257 (512)
Q Consensus 179 c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~l-g~~l~p~i~~~l~~~~g 257 (512)
.+..+..+.++++|+...+++-.+.....|..|.+. -|++.++..++..+ |+.++....+++.|.+|
T Consensus 344 ------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g 411 (448)
T COG2271 344 ------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTATGFVGLFAYLIGAALAGLPLGYIADTWG 411 (448)
T ss_pred ------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccchhchhhhHHHHhhHHhcCCcceeeEecCC
Confidence 466778888899999999988888888899999877 67777776667777 89999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 010358 258 WGSAFGALAIAMGISNMLFFIG 279 (512)
Q Consensus 258 w~~~f~i~~~~~~i~~i~~~~~ 279 (512)
|...|.+..+..+++.++++..
T Consensus 412 W~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 412 WDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred CcchHHHHHHHHHHHHHHHHHH
Confidence 9999998777776666655443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-15 Score=163.96 Aligned_cols=147 Identities=12% Similarity=0.104 Sum_probs=128.2
Q ss_pred HHhhHhcCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCccc
Q 010358 94 TFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (512)
Q Consensus 94 ~yl~~~l~~s---~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~ 170 (512)
.-+.+++|++ ..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.++.+++
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~-------------- 177 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS-------------- 177 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc--------------
Confidence 4467789998 88999999999999999999999999997 99999999999988888877765
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHH
Q 010358 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (512)
Q Consensus 171 ~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~ 250 (512)
.++..+++.|++.|++.++..+...+++.|.+|+++ |+...+++..+..+|.+++|.++.
T Consensus 178 --------------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~ 237 (505)
T TIGR00898 178 --------------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAY 237 (505)
T ss_pred --------------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999887 899999998999999999998877
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 251 YIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 251 ~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
.+.+ ||+.|++.++..++..+..++
T Consensus 238 ~~~~---wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 238 FIPD---WRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred HhhH---HHHHHHHHHHHHHHHHHHHHh
Confidence 6654 999999888776655555433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-15 Score=160.91 Aligned_cols=152 Identities=18% Similarity=0.268 Sum_probs=126.9
Q ss_pred HHHhhHhcCCC--------hhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCC
Q 010358 93 VTFMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164 (512)
Q Consensus 93 ~~yl~~~l~~s--------~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~ 164 (512)
...+..+++.+ ..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++.+...
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~------ 123 (481)
T TIGR00879 51 LALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF------ 123 (481)
T ss_pred hhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 33444455555 78999999999999999999999999998 9999999999999988888765411
Q ss_pred CCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHH
Q 010358 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 244 (512)
Q Consensus 165 ~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l 244 (512)
..+...++++|++.|+|.+...+...++++|.+|+++ |+.++++++.+.++|..+
T Consensus 124 -------------------~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~ 178 (481)
T TIGR00879 124 -------------------ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILV 178 (481)
T ss_pred -------------------ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHH
Confidence 0345678899999999999999999999999999888 999999999999999999
Q ss_pred HhHHH---HhhhhccchHHHHHHHHHHHHHHHHHH
Q 010358 245 AFTLV---VYIQMEHGWGSAFGALAIAMGISNMLF 276 (512)
Q Consensus 245 ~p~i~---~~l~~~~gw~~~f~i~~~~~~i~~i~~ 276 (512)
++.++ +.+.+..+||+.|++.++..++.++..
T Consensus 179 ~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~ 213 (481)
T TIGR00879 179 AYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGL 213 (481)
T ss_pred HHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 99999 777778899999998665555444433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-15 Score=152.22 Aligned_cols=156 Identities=17% Similarity=0.229 Sum_probs=135.1
Q ss_pred HHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCC
Q 010358 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (512)
Q Consensus 87 ~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~ 166 (512)
...+.++.+. +++|++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++...
T Consensus 9 ~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~---------- 76 (377)
T PRK11102 9 MYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALA---------- 76 (377)
T ss_pred HHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHH----------
Confidence 3445566665 46999999999999999999999999999999998 99999999999988888887765
Q ss_pred CcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHh
Q 010358 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (512)
Q Consensus 167 ~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p 246 (512)
.+...+++.+++.|++.+...+...+++.|.+|+++ |++.+++++....+|..++|
T Consensus 77 ------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~ 132 (377)
T PRK11102 77 ------------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAP 132 (377)
T ss_pred ------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999999999877 99999999999999999999
Q ss_pred HHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 247 TLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 247 ~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
.+++++.+..||++.|++.++..++..++...
T Consensus 133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (377)
T PRK11102 133 IIGGWLLVWFSWHAIFWVLALAAILAAALVFF 164 (377)
T ss_pred HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877766555444433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.5e-15 Score=156.43 Aligned_cols=175 Identities=15% Similarity=0.089 Sum_probs=132.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 010358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (512)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~ 146 (512)
+++.+.......++..+..+.+.. +..++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~ 111 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAP-LLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT 111 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence 444555555555555555555443 34577889999999999998889999999999999999998 9999999999888
Q ss_pred HHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 147 ~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
.++.++++++ .+...++++|++.|++.+...+ ....++|.+|+++
T Consensus 112 ~~~~~~~~~~----------------------------~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------ 156 (476)
T PLN00028 112 APAVFCMSLV----------------------------SSATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------ 156 (476)
T ss_pred HHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------
Confidence 8887777665 4566778889999998876543 4567899999887
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHhhh----h-----ccchHHHHHHHHHHHHHHHHHHHh
Q 010358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQ----M-----EHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 227 r~~~~~~~~~~~~lg~~l~p~i~~~l~----~-----~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
|+.++++++...++|+.+++.+.+.+. + ..|||+.|++.+++.++..++.++
T Consensus 157 rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 157 VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999988777778777766665442 2 258999999888776655444433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-15 Score=159.52 Aligned_cols=149 Identities=19% Similarity=0.233 Sum_probs=136.4
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCC
Q 010358 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (512)
Q Consensus 99 ~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~ 178 (512)
+++++..+-+.+.+.+..++.++++.+|+++||+ |-|+++.++.++..+++++..+++.
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~-------------------- 125 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS-------------------- 125 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 6888999999999999999999999999999998 9999999999999999999988743
Q ss_pred CCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhc-cc
Q 010358 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HG 257 (512)
Q Consensus 179 c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~-~g 257 (512)
.+...+++.|+++|++.|...|++..+.+.+.|++| |+++.++.+.+..+|.+++-.++|++.+. .|
T Consensus 126 ------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~G 193 (466)
T KOG2532|consen 126 ------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLG 193 (466)
T ss_pred ------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC
Confidence 344577899999999999999999999999999998 99999999999999999999999999998 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc
Q 010358 258 WGSAFGALAIAMGISNMLFFIGT 280 (512)
Q Consensus 258 w~~~f~i~~~~~~i~~i~~~~~~ 280 (512)
|++.|++.+++.++..++++...
T Consensus 194 W~sifY~~g~~g~i~~~~w~~~~ 216 (466)
T KOG2532|consen 194 WPSIFYVFGIVGLIWFILWFLFY 216 (466)
T ss_pred CchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998887777776643
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=9e-15 Score=154.34 Aligned_cols=174 Identities=16% Similarity=0.078 Sum_probs=128.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHH-HHHHHHHHH-----HHHHHHHHHHHHhhccchHHHH
Q 010358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSS-NAVNNFLGI-----SQASSVLGGFLADAYLGRYWTI 139 (512)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~-~~~~~~~~~-----~~l~~l~~G~LsD~~~GR~~~i 139 (512)
.||++.....+..++..+....+. .+.+++.++++.+..+.+ ...+..... ..++.++.|+++||+ |||+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l 89 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLFG-FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGL 89 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHH
Confidence 456677777777777777775554 456678888998776644 333322221 235788999999998 999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCC
Q 010358 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (512)
Q Consensus 140 ~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~ 219 (512)
.++.+++.++.++++++.....+. ......++++|++.|++.++..++...+++|.+|++
T Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~ 149 (434)
T PRK15075 90 IVTLSIMASGTLLIAFVPGYATIG--------------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPG 149 (434)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHH--------------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcc
Confidence 999999999988888761100000 000125688999999999999999999999999998
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhh--------hhccchHHHHHHHHH
Q 010358 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI--------QMEHGWGSAFGALAI 267 (512)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l--------~~~~gw~~~f~i~~~ 267 (512)
+ |++..+++....++|..+++.+++.+ .+..|||+.|++.++
T Consensus 150 ~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 150 R------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred c------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 8 99999998888888877777776665 356899999987543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-14 Score=149.94 Aligned_cols=159 Identities=7% Similarity=-0.113 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH-HHHHH
Q 010358 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YLAGL 150 (512)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l-~~ig~ 150 (512)
+.+.+..++..+++-...++++.|++ ++|++..+.+.+.+.+.....+++++.|+++||+ ||+........+ ..+..
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~ 84 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence 33445555556665556678888885 6899999999999999999999999999999998 985433221111 11111
Q ss_pred H-HHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 151 T-GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 151 ~-~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
+ ....+ .+.+.+++.+.+.+.+.+...|...++..+. .++ |+.
T Consensus 85 ~~~~~~~----------------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~ 128 (382)
T TIGR00902 85 AAFSAGA----------------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGL 128 (382)
T ss_pred HHHHHhh----------------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCC
Confidence 1 11121 4677888889889988888888877776442 233 778
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHH
Q 010358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~ 268 (512)
.++......++|.+++|.+++++.+.+||+..|++..+.
T Consensus 129 ~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 129 DYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG 167 (382)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 889999999999999999999999999999999876654
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-14 Score=151.51 Aligned_cols=177 Identities=10% Similarity=-0.111 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
.+|......++...+...+.++++.|+++++|++..+.+++.+.+.+...++.+++|+++||+ |||+.++.+.....++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~ 81 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVL 81 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 456677778888888888889999999999999999999999999999999999999999998 9999998877666554
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
...+......+.. . ......+++++++.+++.+...+....+..|.-+ + ++.
T Consensus 82 ~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~ 133 (396)
T TIGR00882 82 FAPFFIYVFGPLL-Q-------------------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNF 133 (396)
T ss_pred HHHHHHHHhhhHH-H-------------------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------ccc
Confidence 4332221100000 0 0122344566777888888877877777666422 1 334
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 010358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~ 276 (512)
.++......++|..++|.+++.+.+ .+|++.|++.+++.++..++.
T Consensus 134 ~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~ 179 (396)
T TIGR00882 134 EYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLL 179 (396)
T ss_pred ccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHH
Confidence 5667777889999999999998865 599999998877666555443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.8e-15 Score=154.99 Aligned_cols=178 Identities=13% Similarity=0.076 Sum_probs=135.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 010358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (512)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ 147 (512)
|+.++...+...........+. ....++++ +|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~ 102 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFA-LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHH-hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHH
Confidence 3333333333333333332223 34556665 599999999999999999999999999999998 99999999988888
Q ss_pred HHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhh
Q 010358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (512)
Q Consensus 148 ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (512)
++.+++..... . ..+...+++.|++.|++.|...+.....+.|.+|+++ |
T Consensus 103 ~~~~~~~~~~~---~---------------------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------r 152 (438)
T TIGR00712 103 AVMLLMGFVPW---A---------------------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------R 152 (438)
T ss_pred HHHHHHhcccc---c---------------------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------c
Confidence 87776655311 0 0245667788999999999988888899999999888 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHhh-hhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 228 DRFFNFFYLSVTVGAIVAFTLVVYI-QMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~l-~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
++++++++.+.++|+.+++.+.+.+ .+..+||+.|++.+++.++..++.++
T Consensus 153 g~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~ 204 (438)
T TIGR00712 153 GTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFA 204 (438)
T ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887764 44578999999888776665544443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.3e-15 Score=155.24 Aligned_cols=178 Identities=8% Similarity=-0.140 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
..+.+....++..++++.+.++++.|+++++|++..+.+.+.+.+.++..+++++.|+++||+ |||+++.++..+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~ 89 (420)
T PRK09528 11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLVL 89 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 456666677777787778899999999999999999999999999999999999999999998 9999998876665554
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhH-HHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~-~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (512)
...+...... ... ...+.+.++.++..+.......+...++.++.. +.++
T Consensus 90 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g 140 (420)
T PRK09528 90 FGPFFIYVFA-------------------------PLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSG 140 (420)
T ss_pred HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhcc
Confidence 4322221000 000 011112222222222222222222222222111 1256
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
..++..+...++|..++|.+++++.+ .+|++.|++.++..++.+++.+.
T Consensus 141 ~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~ 189 (420)
T PRK09528 141 FEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFF 189 (420)
T ss_pred ccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhc
Confidence 67777778889999999999999876 48999998877766655555443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=152.93 Aligned_cols=171 Identities=13% Similarity=0.097 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 73 FIFGNEMAERMAYFGLSV---NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 73 ~i~~~~~~~~~~~~~v~~---~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
-++...++...+||.+.- ...+++.++.++|.++.+.+.+.+.+.+.++-.+.|.+|||. +.|..+.+++++..+.
T Consensus 29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai~ 107 (448)
T COG2271 29 QIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAIV 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHHH
Confidence 345555666777776654 356888999999999999999999999999999999999998 9999999999999999
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
.+++.++ .+...+.+..++.|+.+|.-.|+....++.+|+.++ ||+
T Consensus 108 nil~Gfs----------------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~ 153 (448)
T COG2271 108 NILFGFS----------------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGT 153 (448)
T ss_pred HHHHhhh----------------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCc
Confidence 9999887 577888888999999999999999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHHhHHH--HhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 230 FFNFFYLSVTVGAIVAFTLV--VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~--~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
..++++.+-|+|+++.|.+. +++..+.+||.+|++++++.++..++.+.
T Consensus 154 ~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~ 204 (448)
T COG2271 154 WWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLF 204 (448)
T ss_pred eEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999999999887655544444
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-15 Score=151.03 Aligned_cols=158 Identities=16% Similarity=0.099 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 010358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (512)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~ 150 (512)
.+...+..++.....+...+.++.|+++++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPC 81 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 34455555666666666777777789999999999999999999999999999999999998 99999999999999988
Q ss_pred HHHhhhhcccccCCCCCcccccccccCCCCCcchh-hHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 151 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~-~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
+++++. . +...++++|++.|++.+. .+...++++|.+|+++ |+.
T Consensus 82 ~~~~~~----------------------------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~ 126 (366)
T TIGR00886 82 LWAGLA----------------------------VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGT 126 (366)
T ss_pred HHHHHH----------------------------hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhH
Confidence 888776 4 677888999999998654 4566788999999877 999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhh----------ccchHHHHHH
Q 010358 230 FFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGA 264 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~l~~----------~~gw~~~f~i 264 (512)
..+++....++|..+++.+++.+.. ..+|++.|++
T Consensus 127 ~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 127 ALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 9999887777887777777766544 3489999944
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-14 Score=151.17 Aligned_cols=154 Identities=13% Similarity=-0.019 Sum_probs=122.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 010358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (512)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~ 146 (512)
....+..+....+...+........+ +.+++++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++..++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~-p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~ 101 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY 101 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 34455555566666666665555544 455899999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 147 ~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
.++.+++...... .++..++++|++.|+|.|...+..+++++|..++++
T Consensus 102 ~~~~~l~~~~~~a-------------------------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------ 150 (438)
T PRK10133 102 ALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------ 150 (438)
T ss_pred HHHHHHHHHHHhc-------------------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------
Confidence 9998776422110 467889999999999999999999999998765544
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHhhh
Q 010358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (512)
Q Consensus 227 r~~~~~~~~~~~~lg~~l~p~i~~~l~ 253 (512)
|...++.+.....+|..++|.+++.+.
T Consensus 151 ~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 151 GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555678888888888888888876543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-14 Score=169.54 Aligned_cols=155 Identities=15% Similarity=0.119 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChh--HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA--DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~--~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~ 146 (512)
+.+...++..++..+...+....+..++...++.+.. ..+++.+++.+...++.+++|+++||+ |||++++++.++.
T Consensus 9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~ 87 (1146)
T PRK08633 9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE 87 (1146)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence 3444555566666665555555566667666776543 357888899999999999999999998 9999999988776
Q ss_pred HHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 147 ~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
+++.++..++... .++..++++|++.|++.+...+...++++|.+|+++
T Consensus 88 ~~~~~~~~~~~~~-------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------ 136 (1146)
T PRK08633 88 VGLTLLIVLAYYL-------------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------ 136 (1146)
T ss_pred HHHHHHHHHHHHH-------------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------
Confidence 6665554443110 357788999999999999999999999999999888
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHhhhhc
Q 010358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQME 255 (512)
Q Consensus 227 r~~~~~~~~~~~~lg~~l~p~i~~~l~~~ 255 (512)
|+.+++++..+.++|.++|+.+++++.+.
T Consensus 137 r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 137 LSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998775
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5e-14 Score=147.88 Aligned_cols=194 Identities=9% Similarity=-0.034 Sum_probs=137.9
Q ss_pred ccC-CCCCcccccCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-hcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 010358 53 NVH-GKPIADLSKTGGW---IAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGF 127 (512)
Q Consensus 53 ~~~-~~p~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~-~l~~s~~~a~~~~~~~~~~~~l~~l~~G~ 127 (512)
+|+ +||. .|..+++. |.++...+ .+...+..+.+.+.+..++.+ ++|++..+.+++.+++..+..++.++.|+
T Consensus 15 ~w~pe~~~-~w~~~~~~~a~r~l~~s~~-~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~ 92 (462)
T PRK15034 15 DWKPENPA-FWENKGKHIARRNLWISVS-CLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSF 92 (462)
T ss_pred CCCCCChH-HHhhcCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 3444 56655554 55444443 344445555555556667655 89999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhh
Q 010358 128 LADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPC 207 (512)
Q Consensus 128 LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~ 207 (512)
+.||+ |.|+++.++.++..+.+++++++... + ..++..+++.+++.|++ ++..+.
T Consensus 93 l~Dr~-G~R~v~~~~~ll~~i~~~~~~~a~~~----~-------------------~~s~~~lli~r~l~Gig-g~~f~~ 147 (462)
T PRK15034 93 MVPIF-GGRRWTVFSTAILIIPCVWLGIAVQN----P-------------------NTPFGIFIVIALLCGFA-GANFAS 147 (462)
T ss_pred HHHHh-CChHHHHHHHHHHHHHHHHHHHHHcc----c-------------------CCCHHHHHHHHHHHHHH-HHhHHH
Confidence 99998 99999999999988888877764110 0 03678899999999998 667888
Q ss_pred hhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhh-----h-------------ccchHHHHHHHHHHH
Q 010358 208 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-----M-------------EHGWGSAFGALAIAM 269 (512)
Q Consensus 208 ~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~-----~-------------~~gw~~~f~i~~~~~ 269 (512)
....++++||+++ |+++++++....|+|..+++.+...+. . ..+|+..+++..++.
T Consensus 148 ~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~ 221 (462)
T PRK15034 148 SMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLL 221 (462)
T ss_pred HHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHH
Confidence 9999999999888 999999986666666665554443322 2 334677766666665
Q ss_pred HHHHHHHHhh
Q 010358 270 GISNMLFFIG 279 (512)
Q Consensus 270 ~i~~i~~~~~ 279 (512)
+++.++.++.
T Consensus 222 iv~~i~~~~~ 231 (462)
T PRK15034 222 AIATIAAWSG 231 (462)
T ss_pred HHHHHHHHHh
Confidence 5555554443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.67 E-value=7e-14 Score=146.48 Aligned_cols=172 Identities=11% Similarity=0.023 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 010358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (512)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~ 150 (512)
++.+....+...+.. ++...+...+++++|++..+++++.+.+..+..++.++.|+++||+ |||+++.++.+++.++.
T Consensus 5 ~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 5 FALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 444555555555555 4544556677899999999999999999999999999999999998 99999999999999998
Q ss_pred HHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhH
Q 010358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (512)
Q Consensus 151 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~ 230 (512)
+++..+.. ..++..+++++++.|+|.|...+..++++.+..|+++ +++.
T Consensus 83 ~l~~~~~~-------------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~ 131 (410)
T TIGR00885 83 FLFWPAAE-------------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRR 131 (410)
T ss_pred HHHHHHHh-------------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHH
Confidence 77654311 0367788899999999999999999999999988776 7888
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhh--------------------------ccchHHHHHHHHHHHHHHHHH
Q 010358 231 FNFFYLSVTVGAIVAFTLVVYIQM--------------------------EHGWGSAFGALAIAMGISNML 275 (512)
Q Consensus 231 ~~~~~~~~~lg~~l~p~i~~~l~~--------------------------~~gw~~~f~i~~~~~~i~~i~ 275 (512)
.++.+...++|..++|.+++.+.. ..+||+.|.+.+++.++..++
T Consensus 132 ~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 132 LNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999887742 246999998777755544333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-14 Score=145.62 Aligned_cols=144 Identities=17% Similarity=0.146 Sum_probs=120.4
Q ss_pred HHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcc
Q 010358 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (512)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~ 169 (512)
..+...+.+++|++..+++++.+.+..+..++.++.|+++||+ |||+++.++.++..++.+.. ..
T Consensus 20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~------------- 84 (355)
T TIGR00896 20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA------------- 84 (355)
T ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh-------------
Confidence 3445567789999999999999999999999999999999998 99999999988877776655 32
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHH
Q 010358 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (512)
Q Consensus 170 ~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~ 249 (512)
.+...+++.|++.|+|.+...+.......|.++ ++ |++.+++++.+.++|..+++.++
T Consensus 85 ---------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~ 142 (355)
T TIGR00896 85 ---------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAAT 142 (355)
T ss_pred ---------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999998888888888888886 35 89999999999999999999999
Q ss_pred Hhhhhccc--hHHHHHHHHHHHH
Q 010358 250 VYIQMEHG--WGSAFGALAIAMG 270 (512)
Q Consensus 250 ~~l~~~~g--w~~~f~i~~~~~~ 270 (512)
+.+.+..+ ||+.|.+.++..+
T Consensus 143 ~~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 143 VPLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHH
Confidence 98877653 9988876655443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-13 Score=144.98 Aligned_cols=176 Identities=14% Similarity=0.077 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
.+..+....++.+++...-...++-++. ++.-|....+++.....+-..+..+++|.++||+ .|||+++.+.++..+.
T Consensus 11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~ 88 (524)
T PF05977_consen 11 NFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALV 88 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHH
Confidence 3444555566666666444444444443 4566788888888888888899999999999998 9999999999887776
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
.+.+++...... .+.+.+++..++.|++.+...|...+++.|+.|+++ ...
T Consensus 89 ~~~L~~l~~~~~-----------------------~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~ 139 (524)
T PF05977_consen 89 ALLLAVLAFFGL-----------------------LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPA 139 (524)
T ss_pred HHHHHHHHHhCc-----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHH
Confidence 655555422110 356778888899999999999999999999999887 889
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 010358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~ 276 (512)
+.++.....|+...+||.++|.+....|-.+.|.+.++..++.++.+
T Consensus 140 A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l 186 (524)
T PF05977_consen 140 ANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILAL 186 (524)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998898889998887766654443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-13 Score=162.64 Aligned_cols=146 Identities=14% Similarity=0.042 Sum_probs=111.1
Q ss_pred HhhHhcCCChh-HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH--HHHHHHHHhhhhcccccCCCCCcccc
Q 010358 95 FMFYVMHKSFA-DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI--YLAGLTGITLCATMKVFMPNQDNCDR 171 (512)
Q Consensus 95 yl~~~l~~s~~-~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l--~~ig~~~l~~~~~~~~l~~~~~~~~~ 171 (512)
.+++..+.+.. ..+++.+++.+...++.+++|+++||+ |||+++.+...+ .+....++... .
T Consensus 41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~-~------------- 105 (1140)
T PRK06814 41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFH-L------------- 105 (1140)
T ss_pred HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHH-H-------------
Confidence 33444444333 356777889999999999999999998 999986442222 21121121111 0
Q ss_pred cccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHh
Q 010358 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251 (512)
Q Consensus 172 ~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~ 251 (512)
.+++.++++|+++|++.+...|...+++.|.+++++ |+.++++...+.++|.++||.++|+
T Consensus 106 -------------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~ 166 (1140)
T PRK06814 106 -------------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGL 166 (1140)
T ss_pred -------------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999887 9999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHHHHHH
Q 010358 252 IQMEHGWGSAFGALAIAMGISNM 274 (512)
Q Consensus 252 l~~~~gw~~~f~i~~~~~~i~~i 274 (512)
+....||++.|++.+++.+++++
T Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~ 189 (1140)
T PRK06814 167 ATISGNFVILVALLMGIAVLGWL 189 (1140)
T ss_pred HHhccccHHHHHHHHHHHHHHHH
Confidence 99999999998544444443333
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-13 Score=141.25 Aligned_cols=156 Identities=19% Similarity=0.201 Sum_probs=112.6
Q ss_pred HHHHHhhHhcC--CChhHHHHHHHH--HH---HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccC
Q 010358 91 NMVTFMFYVMH--KSFADSSNAVNN--FL---GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (512)
Q Consensus 91 ~l~~yl~~~l~--~s~~~a~~~~~~--~~---~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~ 163 (512)
+...++.++.. .++.+.+...+. +. ....++.++.|+++||+ |||+++.++.++..++.++++++...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~- 91 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATI- 91 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhh-
Confidence 45555555544 333444333322 22 23346789999999998 99999999999999988888775210000
Q ss_pred CCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 010358 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (512)
Q Consensus 164 ~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~ 243 (512)
.......++++|++.|++.+...+...++++|.+++++ |+...++.+.+..+|..
T Consensus 92 -------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~ 146 (394)
T TIGR00883 92 -------------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLL 146 (394)
T ss_pred -------------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHH
Confidence 00112357888999999999999999999999999887 99999999999999999
Q ss_pred HHhHHHHhhh--------hccchHHHHHHHHHHHHHHH
Q 010358 244 VAFTLVVYIQ--------MEHGWGSAFGALAIAMGISN 273 (512)
Q Consensus 244 l~p~i~~~l~--------~~~gw~~~f~i~~~~~~i~~ 273 (512)
+++.+...+. +..+||+.|.+.++..+++.
T Consensus 147 i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 147 LAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 9998876653 35789999987766554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.7e-13 Score=141.86 Aligned_cols=182 Identities=13% Similarity=0.111 Sum_probs=136.1
Q ss_pred CCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc----c
Q 010358 58 PIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----L 133 (512)
Q Consensus 58 p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~----~ 133 (512)
|. +|..+++ .+.++...+...+..+.....++.|+.+ .|.+..+.+.... ... .+++.+++|+++||+ +
T Consensus 5 ~l-~~~~~~~---~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~~-~~~-~~~~~~l~gpl~Dr~~~~~~ 77 (491)
T PRK11010 5 YL-RIFQQPN---SAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFSL-VGQ-AYVFKFLWSPLMDRYTPPFL 77 (491)
T ss_pred HH-HHHcccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHH-HHH-HHHHHHHHHHHHHcccccCC
Confidence 55 5554433 4555566666666776677778888765 5888888887522 222 246889999999995 2
Q ss_pred chHHH-HHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHh
Q 010358 134 GRYWT-IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212 (512)
Q Consensus 134 GR~~~-i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ 212 (512)
||||. +.++.++..++...+++.. |. .+...+.+.+++.+++.+...+...++.
T Consensus 78 Grrr~~ll~~~i~~~~~~~~~a~~~------~~-------------------~~l~~l~~~~~l~~~~~a~~~i~~~a~~ 132 (491)
T PRK11010 78 GRRRGWLLATQLLLLVAIAAMGFLE------PG-------------------TQLRWLAALAVVIAFCSASQDIVFDAWK 132 (491)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHcC------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88885 5567666666666665531 11 4567788888899999998999999999
Q ss_pred hccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhh-ccchHHHHHHHHHHHHHHHHHHH
Q 010358 213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNMLFF 277 (512)
Q Consensus 213 ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~-~~gw~~~f~i~~~~~~i~~i~~~ 277 (512)
+|.+|+++ |+++.++...+..+|..+++.+++++.+ ..|||..|++.++..++..+..+
T Consensus 133 ~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 133 TDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred HHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999877 9999999999999999999999999988 57999999998877665544433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-13 Score=139.45 Aligned_cols=156 Identities=8% Similarity=-0.041 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchH----HHHHHHHHHHHHHHHHH
Q 010358 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY----WTIAIFTTIYLAGLTGI 153 (512)
Q Consensus 78 ~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~----~~i~~~~~l~~ig~~~l 153 (512)
.++..+++..+.++++.|++ ++|.+..+.+++.+.+.+...++.+++|+++||+ ||+ +.+.+...+. .....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~--~~~~~ 88 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF--AVAFW 88 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH--HHHHH
Confidence 34444555566778889995 5899999999999999999999999999999998 984 2222222111 11111
Q ss_pred hhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHH
Q 010358 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (512)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~ 233 (512)
... .+.+.+++.+++.+++.+...+...++..|.. ++ |+..++.
T Consensus 89 ~~~----------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~------~~~a~~~ 132 (382)
T PRK11128 89 FGA----------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQ------IGLDYGK 132 (382)
T ss_pred Hhc----------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hh------ccCCcch
Confidence 111 45777888899999998888888777777652 22 5666777
Q ss_pred HHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHH
Q 010358 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (512)
Q Consensus 234 ~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~ 273 (512)
.....++|..+||.+++++.+++||+..|++.++..++.+
T Consensus 133 ~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~ 172 (382)
T PRK11128 133 VRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML 172 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 7777889999999999999999999999987775544433
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-13 Score=141.25 Aligned_cols=139 Identities=16% Similarity=0.116 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhH
Q 010358 108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM 187 (512)
Q Consensus 108 ~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~ 187 (512)
+.+++++.++.++|..++|+++||+ |||..++++.++..++.+++.++... ...
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~-------------------------~~~ 116 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA-------------------------PSF 116 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh-------------------------hhH
Confidence 5678889999999999999999998 99999999999988887777776321 467
Q ss_pred HHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHH-Hhh-hhccchHHHHHHH
Q 010358 188 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV-VYI-QMEHGWGSAFGAL 265 (512)
Q Consensus 188 ~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~-~~l-~~~~gw~~~f~i~ 265 (512)
.+++++|++.|+..|......+-++.|..|.+- ||..-....++..+|-.++..++ ..+ .+...|++.+.+.
T Consensus 117 e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~ 190 (485)
T KOG0569|consen 117 EMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFP 190 (485)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHH
Confidence 889999999999999999999999999999988 99998889999999999986555 333 3455699999888
Q ss_pred HHHHHHHHHHHHh
Q 010358 266 AIAMGISNMLFFI 278 (512)
Q Consensus 266 ~~~~~i~~i~~~~ 278 (512)
.+..++.++++.+
T Consensus 191 ~i~~~~~l~~l~~ 203 (485)
T KOG0569|consen 191 LIPALLQLALLPF 203 (485)
T ss_pred HHHHHHHHHHHhc
Confidence 8877766665544
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-13 Score=143.46 Aligned_cols=173 Identities=16% Similarity=0.140 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchHH-HHHHHHHHHHHHHHHHh
Q 010358 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTIYLAGLTGIT 154 (512)
Q Consensus 79 ~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~---~GR~~-~i~~~~~l~~ig~~~l~ 154 (512)
+...+....+..+++.|+++++|++..+++.+.++..+...+..|+.|+++||. +|||| .++++.++..++.+++.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence 344455556678899999999999999999999999999999999999999983 48855 56677777777766665
Q ss_pred hhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCC-CChhhhhhhhhHHHH
Q 010358 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRFFNF 233 (512)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~-~~~~~~~~r~~~~~~ 233 (512)
... .... ......+++.+++.+++.+.......++.+|..++ ++ |++..++
T Consensus 89 ~~~---~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~ 140 (437)
T TIGR00792 89 TTP---DFSA-------------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTF 140 (437)
T ss_pred hCC---CCCc-------------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHH
Confidence 531 1000 02345566667778888888777888888888753 33 8888888
Q ss_pred HHHHHHHHHHHHhHHHHhhh-------hccchHHHHHHHHHHHHHHHHHHHhh
Q 010358 234 FYLSVTVGAIVAFTLVVYIQ-------MEHGWGSAFGALAIAMGISNMLFFIG 279 (512)
Q Consensus 234 ~~~~~~lg~~l~p~i~~~l~-------~~~gw~~~f~i~~~~~~i~~i~~~~~ 279 (512)
.....++|+.+++.+.+.+. +..||++.+.+.+++.++..++.+..
T Consensus 141 ~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~ 193 (437)
T TIGR00792 141 RRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFG 193 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888777766655443 24689999888877766555544443
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-13 Score=152.57 Aligned_cols=207 Identities=15% Similarity=0.111 Sum_probs=153.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (512)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~ 144 (512)
..+++.+++.+....+......+........+.++|+++..+.+++.+.+.++..++.++.|+++||+ ||++.+.++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~l 106 (633)
T TIGR00805 28 FSKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCA 106 (633)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHH
Confidence 34566555555545555555556767777888999999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHhhhhccc-ccCC-------------CCCcccccc-------cccCCCCCcc--hhhHHHHHHHHHHHHHhh
Q 010358 145 IYLAGLTGITLCATMK-VFMP-------------NQDNCDRIS-------QLLGSCEPAK--SWQMLYLYTVLYITGFGA 201 (512)
Q Consensus 145 l~~ig~~~l~~~~~~~-~l~~-------------~~~~~~~~~-------~~~~~c~~~~--~~~~~~l~~~~~l~g~g~ 201 (512)
++.+|.+++++..++. .... ..+.|.... +....|.... ...+..++++|++.|+|.
T Consensus 107 l~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~ 186 (633)
T TIGR00805 107 IMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGA 186 (633)
T ss_pred HHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccC
Confidence 9999999988752110 0000 011221000 0011232222 123567889999999999
Q ss_pred cChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhcc----------------------chH
Q 010358 202 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH----------------------GWG 259 (512)
Q Consensus 202 g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~----------------------gw~ 259 (512)
+...+...+++.|.+|+++ |+..+++++.+..+|.++|+++++++.+.+ +|+
T Consensus 187 ~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWw 260 (633)
T TIGR00805 187 TPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWW 260 (633)
T ss_pred CcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHH
Confidence 9999999999999999988 999999999999999999999999887543 278
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 010358 260 SAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 260 ~~f~i~~~~~~i~~i~~~~ 278 (512)
.+|++.+++.++..+.+++
T Consensus 261 l~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 261 IGFLICGGVALLTSIPFFF 279 (633)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888877766655544433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-12 Score=133.15 Aligned_cols=157 Identities=14% Similarity=0.127 Sum_probs=117.2
Q ss_pred HHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc----cchHHHH-HHHHHHHHHHHHHHhhhhccccc
Q 010358 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWTI-AIFTTIYLAGLTGITLCATMKVF 162 (512)
Q Consensus 88 v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~----~GR~~~i-~~~~~l~~ig~~~l~~~~~~~~l 162 (512)
+.......+.+++|++.++.+..... .....+ .+++|+++||+ +||||.+ +.+.++..+.+..+++..
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~----- 78 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV----- 78 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC-----
Confidence 33444555566889999999988654 333333 88999999997 4899975 556666666555554431
Q ss_pred CCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 010358 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (512)
Q Consensus 163 ~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~ 242 (512)
+ ..+...+++..++.+++.+...+...++++|.+|+++ |+.+.++...+.++|.
T Consensus 79 -~-------------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~ 132 (356)
T TIGR00901 79 -P-------------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGM 132 (356)
T ss_pred -c-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHH
Confidence 0 0344555555667778888888999999999999877 9999999999999999
Q ss_pred HHHhHHHHhhhhccc--------hHHHHHHHHHHHHHHHHHHH
Q 010358 243 IVAFTLVVYIQMEHG--------WGSAFGALAIAMGISNMLFF 277 (512)
Q Consensus 243 ~l~p~i~~~l~~~~g--------w~~~f~i~~~~~~i~~i~~~ 277 (512)
++++.+++++....| ||..|++.++..++++++.+
T Consensus 133 ~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 133 LLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888 99999988887666554443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-12 Score=141.62 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=129.0
Q ss_pred hHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCccccccccc
Q 010358 97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176 (512)
Q Consensus 97 ~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~ 176 (512)
.+..+.+.....+..+++.++..+|++++|++||++ |||++++++.++.+++.++.+++
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a-------------------- 168 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFA-------------------- 168 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 356677888889999999999999999999999995 99999999999999998888887
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhcc
Q 010358 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (512)
Q Consensus 177 ~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~ 256 (512)
.++..+++.|++.|++.++...+...+++|.++++. |+.+.++ ......++.++|.+++++..
T Consensus 169 --------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~-- 231 (521)
T KOG0255|consen 169 --------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR-- 231 (521)
T ss_pred --------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--
Confidence 688999999999999999999999999999999988 9999998 88888899999999999887
Q ss_pred chHHHHHHHHHHHHHHHHHHHh
Q 010358 257 GWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 257 gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
+||+.+++..+..++.++..++
T Consensus 232 ~Wr~~~~~~~~~~~~~~~~~~l 253 (521)
T KOG0255|consen 232 DWRWLFWIISIPSGLFLLLWFL 253 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHc
Confidence 8999999988877666655333
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.8e-12 Score=129.79 Aligned_cols=167 Identities=15% Similarity=0.122 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc----cchHH-HHHHHHHHHHHH
Q 010358 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYW-TIAIFTTIYLAG 149 (512)
Q Consensus 75 ~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~----~GR~~-~i~~~~~l~~ig 149 (512)
+...+...+.+.-....+|.|+++ .|++.++.+++...... .+..+++|+++||+ +|||| .+.++.++..+.
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 344455555565566778999986 59999999988655554 68899999999996 27765 677777777777
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
+..+++.. +. .+...+++..++.++..+...+...++++|.+|+++ |++
T Consensus 82 ~~~l~~~~------~~-------------------~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~ 130 (402)
T PRK11902 82 IAAMAFCP------PH-------------------AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGA 130 (402)
T ss_pred HHHHHhcC------cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhH
Confidence 66665531 10 345556666667778888888999999999999887 999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhc-cchHHHHHHHHHHHHHHHHH
Q 010358 230 FFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNML 275 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~l~~~-~gw~~~f~i~~~~~~i~~i~ 275 (512)
+.++...+..+|..+++.+++++.+. .|||..|++.++..++..+.
T Consensus 131 ~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 131 GAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998885 59999999887766554443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.8e-13 Score=142.30 Aligned_cols=181 Identities=12% Similarity=0.030 Sum_probs=131.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 010358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (512)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l 145 (512)
++|+.........++..+.+|++..++|.|+++.+|++..++........++..++.+++|+++||+ |||+++.++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~ 325 (490)
T PRK10642 247 KHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVA 325 (490)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 3455555555555667788999999999999999999988888777778888889999999999998 999998887765
Q ss_pred HHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhh
Q 010358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (512)
Q Consensus 146 ~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (512)
..++.+.+..... . .+...+++++++.+++.++..+....+..+.+|++.
T Consensus 326 ~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~----- 375 (490)
T PRK10642 326 LFVLAIPAFILIN-----S--------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI----- 375 (490)
T ss_pred HHHHHHHHHHHHh-----C--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc-----
Confidence 4443332222100 0 234566777888887777777777888889999988
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHhhhhccc-hHHHHHHHHHHHHHHHHHHHh
Q 010358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~i~~~~ 278 (512)
|++++++.+....+++.++|.+.+++.+..+ |+..+++..+..+++++..++
T Consensus 376 -Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 376 -RYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT 428 (490)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999998555566777889999999887654 676666555444444444433
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-12 Score=129.68 Aligned_cols=116 Identities=16% Similarity=0.075 Sum_probs=103.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCc
Q 010358 103 SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA 182 (512)
Q Consensus 103 s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~ 182 (512)
+..-++.+-+.|.+...+.++++|.+||++ |||++++++.+..++.+.+.+.+
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S-------------------------- 118 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS-------------------------- 118 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 345578888999999999999999999998 99999999999999988888876
Q ss_pred chhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhh
Q 010358 183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (512)
Q Consensus 183 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~ 254 (512)
.++..+.++|++.|+..|- ...+-++++|.+++++ |+.+++....+..+|.++||++++|+.+
T Consensus 119 --~~F~afv~aR~l~Gi~kgn-l~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 119 --RNFAAFVLARFLGGIFKGN-LSVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred --HHHHHHHHHHHhhhhccCc-hHHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 5776777779999998875 4667899999999988 9999999999999999999999999987
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.9e-13 Score=142.52 Aligned_cols=176 Identities=16% Similarity=0.083 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
.+|.+.+..++....++++..++|.|+++.+|++..+++.....+..+..++.+++|+++||+ |||+.+.+...+..++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~~ 337 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALII 337 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 567777778888888888889999999999999999999999889999999999999999998 9988776654444433
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
..++.+... .+....++.+++.|++..+..........|.+|++. +++
T Consensus 338 ~~~~~~~~~--------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~ 385 (467)
T PRK09556 338 FTLGVYQHA--------------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGV 385 (467)
T ss_pred HHHHHHHhc--------------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHH
Confidence 322222100 233445566667776544444444466779999887 999
Q ss_pred HHHHHHHHHHH-HHHHHhHHHHhhhh------------ccchHHHHHHHHHHHHHHHHHHHh
Q 010358 230 FFNFFYLSVTV-GAIVAFTLVVYIQM------------EHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 230 ~~~~~~~~~~l-g~~l~p~i~~~l~~------------~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
+.++.+...++ |+.++|.+.|++.+ ..||+..|++..++.+++++..+.
T Consensus 386 a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 386 ANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887 77999999999999 678999999887777776655543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-12 Score=138.66 Aligned_cols=134 Identities=19% Similarity=0.258 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchh
Q 010358 106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW 185 (512)
Q Consensus 106 ~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~ 185 (512)
+.+++.+.+.++..++.++.|+++|++ |||++++++.+++.+|.++++.+ .
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a----------------------------~ 140 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA----------------------------P 140 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh----------------------------h
Confidence 347999999999999999999999998 99999999999999999999998 6
Q ss_pred hHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhc--cchHHHHH
Q 010358 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--HGWGSAFG 263 (512)
Q Consensus 186 ~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~--~gw~~~f~ 263 (512)
+...++++|++.|+|.|+.....+.+++|..|++. |+...+.+++..++|..++. +.++...+ .+||..++
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~-~~~~~~~~~~~~Wr~~~~ 213 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGY-CINYGTSKVYAGWRIPLG 213 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHH-HHhhhhccCCccHHHHHH
Confidence 88999999999999999999999999999999888 99999999999999998884 44444444 48998888
Q ss_pred HHHHHHHHHHHH
Q 010358 264 ALAIAMGISNML 275 (512)
Q Consensus 264 i~~~~~~i~~i~ 275 (512)
+..+..++..+.
T Consensus 214 ~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 214 LALIPAVILALG 225 (513)
T ss_pred HHHHHHHHHHHH
Confidence 877766555555
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-11 Score=128.07 Aligned_cols=164 Identities=13% Similarity=-0.010 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHHHHH
Q 010358 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTIAIFTTIYLAGLTG 152 (512)
Q Consensus 74 i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR-~~~i~~~~~l~~ig~~~ 152 (512)
+.+..++...++-...++++.|+.+++|++..+.+++.+.+.++..++++++|.++||+ || |+++.++.++..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~~ 85 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLFF 85 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHH
Confidence 44455555555555568999999999999999999999999999999999999999997 65 77888777776666655
Q ss_pred HhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCC--ChhhhhhhhhH
Q 010358 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER--SKDYKTHLDRF 230 (512)
Q Consensus 153 l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~--~~~~~~~r~~~ 230 (512)
..+. .+...+++.+.+.+++.+...+...+...+...+. +......|.+.
T Consensus 86 ~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~ 137 (418)
T TIGR00889 86 AAQV----------------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRV 137 (418)
T ss_pred HHHh----------------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeee
Confidence 5543 34566677777888877666665554432221100 00000014444
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHH
Q 010358 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (512)
Q Consensus 231 ~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~ 273 (512)
++ .+|.+++|.+++.+.....|. .|++.+++.++.+
T Consensus 138 ~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~ 173 (418)
T TIGR00889 138 MG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLG 173 (418)
T ss_pred eh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHH
Confidence 43 378888888888874433454 3555555444443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.9e-11 Score=126.18 Aligned_cols=197 Identities=12% Similarity=0.065 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh----ccchHHHHHHH-HH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA----YLGRYWTIAIF-TT 144 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~----~~GR~~~i~~~-~~ 144 (512)
.++.+....+...+++-...++++.|+ +.+|.+...++.+..+..+...+..++.|++||| + ||||.++++ .+
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~ 82 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAA 82 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHH
Confidence 344555556666666655566666665 6799999999999999999999999999999995 7 999998775 55
Q ss_pred HHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhh
Q 010358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (512)
Q Consensus 145 l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~ 224 (512)
..++++++++.+.....+... . .-..........+.++..+..++....++...++++|++|+++.+
T Consensus 83 ~~~~~l~ll~~~~~~~~~~~~----------~-~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~-- 149 (477)
T TIGR01301 83 LVAFAVILIGFAADIGHLFGD----------N-LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR-- 149 (477)
T ss_pred HHHHHHHHHHhCchhhhhccc----------c-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH--
Confidence 555566666554211100000 0 000000011234455555666778888888899999999987621
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHhh--hhc-------------cchHHHHHHHHHHHHHHHHHHHhhcccc
Q 010358 225 THLDRFFNFFYLSVTVGAIVAFTLVVYI--QME-------------HGWGSAFGALAIAMGISNMLFFIGTPLY 283 (512)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~l~p~i~~~l--~~~-------------~gw~~~f~i~~~~~~i~~i~~~~~~~~~ 283 (512)
++.++++.....++|+++|+.+++++ .+. .+.++.|++.+++.+++.++..+..+++
T Consensus 150 --~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 150 --TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 36789999999999999999998865 221 1578899988888777777666655443
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.2e-12 Score=134.00 Aligned_cols=172 Identities=8% Similarity=-0.028 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----hHHHHHHHHHH
Q 010358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYWTIAIFTTI 145 (512)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~G-----R~~~i~~~~~l 145 (512)
...+....+.+.+. +.+...+..++.+++|++.++.+...+...+...+-++ +|+++|++ + ||+.++++.++
T Consensus 28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLL 104 (468)
T ss_pred HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHH
Confidence 34445577788887 67777889999999999999998888888888777666 99999998 7 77777777665
Q ss_pred HH-HHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhh
Q 010358 146 YL-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (512)
Q Consensus 146 ~~-ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~ 224 (512)
.. +....++.. + .......+.+++.+++.+.......++..|..+ ++++
T Consensus 105 ~~~~~~~~l~~~-------~--------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~-- 154 (468)
T TIGR00788 105 GSAILYGLLPGK-------V--------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS-- 154 (468)
T ss_pred HHHHHHHhcccc-------c--------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC--
Confidence 52 222222111 0 123334446788899999999999999999998 4322
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 010358 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (512)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~ 276 (512)
.++...++.|.+.++|..+++.++|++.+..+|+..|++.+++.++..+..
T Consensus 155 -~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~ 205 (468)
T TIGR00788 155 -AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVS 205 (468)
T ss_pred -cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 245566677778889999999999999999999999998887776664433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-12 Score=134.29 Aligned_cols=154 Identities=12% Similarity=0.023 Sum_probs=134.9
Q ss_pred HHHHHHHhhHhcCCChhH-HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCC
Q 010358 89 SVNMVTFMFYVMHKSFAD-SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (512)
Q Consensus 89 ~~~l~~yl~~~l~~s~~~-a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~ 167 (512)
.+++..|+.+++|++..+ .+.+.+.|..++.++.+++|+++||+ |-|+++.++.+...+..+++.++
T Consensus 45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa----------- 112 (511)
T TIGR00806 45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLG----------- 112 (511)
T ss_pred HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHH-----------
Confidence 456778999999999999 99999999999999999999999998 99999999999999998888886
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhH
Q 010358 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (512)
Q Consensus 168 ~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~ 247 (512)
.+...+.+.|++.|++.|+.. ....++..++|+++ |+++.+++..+.++|.+++++
T Consensus 113 -----------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~ 168 (511)
T TIGR00806 113 -----------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSV 168 (511)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999 99999999999888 999999999999999999999
Q ss_pred HHHhhhhccchHHHHH---HHHHHHHHHHHHHHhh
Q 010358 248 LVVYIQMEHGWGSAFG---ALAIAMGISNMLFFIG 279 (512)
Q Consensus 248 i~~~l~~~~gw~~~f~---i~~~~~~i~~i~~~~~ 279 (512)
++++ ...+||++-+. +......+++++.++.
T Consensus 169 L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L 202 (511)
T TIGR00806 169 LGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFL 202 (511)
T ss_pred HHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999 45679987554 4444455555555543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.7e-13 Score=132.99 Aligned_cols=163 Identities=13% Similarity=0.075 Sum_probs=142.4
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCC
Q 010358 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (512)
Q Consensus 99 ~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~ 178 (512)
.++.++++.+++...+.....+..++.|.+.||+ |+|-.+++|.+++...++++++.
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg---------------------- 156 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFG---------------------- 156 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHc----------------------
Confidence 4566778899999999999999999999999997 99999999999999999999987
Q ss_pred CCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccch
Q 010358 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (512)
Q Consensus 179 c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw 258 (512)
.++++++++|.++|+|.+....+..++++|-||+++. |++.++..-.+..+|-.+||.++|.+.+..|.
T Consensus 157 ------~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk 225 (464)
T KOG3764|consen 157 ------NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGK 225 (464)
T ss_pred ------chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCC
Confidence 5778999999999999999999999999999998763 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccc---CCCCCchHH
Q 010358 259 GSAFGALAIAMGISNMLFFIGTPLYRHR---LPGGSPLTR 295 (512)
Q Consensus 259 ~~~f~i~~~~~~i~~i~~~~~~~~~~~~---~~~~~~~~~ 295 (512)
+..|.+.++++++...+-++..+.++.. .+++.|+.+
T Consensus 226 ~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~~~~~~~~~ 265 (464)
T KOG3764|consen 226 SAPFLVLAIVLLLDGALQLLVIEPTEMDPDSTEQGTPMWS 265 (464)
T ss_pred cCcHHHHHHHHHHHHHHHHheeCccccCccccccCccHHH
Confidence 9999999998888777666655554433 234444444
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.3e-12 Score=131.41 Aligned_cols=164 Identities=10% Similarity=0.080 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhc
Q 010358 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT 158 (512)
Q Consensus 79 ~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~ 158 (512)
+.....++....+++.|+++++|++..+++.+.+...+...++.+++|+++||+ |||+.+.++.+...+....+...
T Consensus 226 ~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~-- 302 (393)
T PRK15011 226 TLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVCFYAGMLMA-- 302 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHH--
Confidence 333344545566789999999999999999888777777788899999999998 99998877665554443333222
Q ss_pred ccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHH
Q 010358 159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 238 (512)
Q Consensus 159 ~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~ 238 (512)
.+...+.+.+++.+++.|...+.......|.+|+ + +++++++++...
T Consensus 303 --------------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~~~~~~ 349 (393)
T PRK15011 303 --------------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTLYTNTS 349 (393)
T ss_pred --------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHHHHHHH
Confidence 2344455666666666666666667777888874 4 788999988889
Q ss_pred HHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 239 ~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
++|..++|.++|++.+..||+..|++.+++.++++++.+.
T Consensus 350 ~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 350 RVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998877777666655544
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.4e-12 Score=126.19 Aligned_cols=182 Identities=14% Similarity=0.116 Sum_probs=147.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (512)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~ 144 (512)
+.++|.++. ....+...+..+.+...+..++.+++|+|..|.+++..+-.+...+..++-|++.||+ |-|++..++.+
T Consensus 10 ~~~~~~L~~-S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~ 87 (417)
T COG2223 10 RIARRNLWL-STLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSML 87 (417)
T ss_pred cchhHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHH
Confidence 334444444 3444555566667778889999999999999999999999999999999999999998 98888889888
Q ss_pred HHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhh
Q 010358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (512)
Q Consensus 145 l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~ 224 (512)
+.++-.+.++++... .+.+.+++...++|++.+ ..+...+.++..||+++
T Consensus 88 l~~IP~~~~~~a~~~-------------------------~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~---- 137 (417)
T COG2223 88 LLLIPCLGLAFAVTY-------------------------PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEK---- 137 (417)
T ss_pred HHHHHHHHHHHHccC-------------------------CchHHHHHHHHHHhcccc-eehcccccccccCChhh----
Confidence 888877777776321 234677788888888755 45677788999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccc---hHHHHHHHHHHHHHHHHHHHhhcc
Q 010358 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGISNMLFFIGTP 281 (512)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~g---w~~~f~i~~~~~~i~~i~~~~~~~ 281 (512)
.|.+.+++- ..|+|..+...++..+....| |+....+..+.++++.+.+++..+
T Consensus 138 --qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 138 --QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred --hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 899999988 999999999999999988888 999988888888887777766544
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-12 Score=136.54 Aligned_cols=177 Identities=17% Similarity=0.134 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chHHHH-HHHHHHH
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTI-AIFTTIY 146 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~-GR~~~i-~~~~~l~ 146 (512)
+.++...+..++.....+++..++|.|+++++|++..+++.....+.++..++.+++|+++||+. |||+.. .+...+.
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~ 332 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 332 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 34666667777777777888899999999999999999988888888888899999999999972 334332 2222233
Q ss_pred HHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 147 ~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
.++.+++.+. +. .+....+++.+++|.+..+.......+..|.+|++.
T Consensus 333 ~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------ 380 (452)
T PRK11273 333 TIATIVYWLN-------PA-------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------ 380 (452)
T ss_pred HHHHHHHHHh-------cc-------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------
Confidence 3333322221 00 122333344445555443333344556779999887
Q ss_pred hhhHHHHHHHHHHHHHHH-HhHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Q 010358 227 LDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (512)
Q Consensus 227 r~~~~~~~~~~~~lg~~l-~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~ 277 (512)
|++++++++...++|+.+ +|.+.|++.+.+||+..|++.++..+++++...
T Consensus 381 ~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 381 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 999999999888888765 799999999999999999988776666555444
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-11 Score=130.93 Aligned_cols=183 Identities=12% Similarity=-0.003 Sum_probs=131.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 010358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (512)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l 145 (512)
++++....+....++..+.+|.+..+++.|+++.+|++......+.........++.+++|+++||+ |||+++.++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~ 325 (438)
T PRK09952 247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALI 325 (438)
T ss_pred HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHH
Confidence 3444444455566777888889999999999999999887665555566667778888999999998 999998887766
Q ss_pred HHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhh
Q 010358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (512)
Q Consensus 146 ~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (512)
..++.+.+..... .. .....+++..++.+++.+...+...++.+|.+|.+.
T Consensus 326 ~~~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~----- 376 (438)
T PRK09952 326 GTLSAFPFFMALE-----AQ-------------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY----- 376 (438)
T ss_pred HHHHHHHHHHHHH-----cC-------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch-----
Confidence 5544433332210 00 123333445556677777778888899999999877
Q ss_pred hhhhHHHH-HHHHHHHHHHHHhHHHHhhhhcc--chHHHHHHHHHHHHHHHHHHHhh
Q 010358 226 HLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEH--GWGSAFGALAIAMGISNMLFFIG 279 (512)
Q Consensus 226 ~r~~~~~~-~~~~~~lg~~l~p~i~~~l~~~~--gw~~~f~i~~~~~~i~~i~~~~~ 279 (512)
|+++.++ +.++..+|++++|.+.+++.+.. +|...+.+.++..+++++..+..
T Consensus 377 -r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 377 -RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred -hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 8888888 55556689999999999998754 48888877776666666555443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.7e-12 Score=129.41 Aligned_cols=169 Identities=13% Similarity=0.061 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcc
Q 010358 80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (512)
Q Consensus 80 ~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~ 159 (512)
+..++++.+..+++.|+.+ .|++ .++.....+.++..++.++.|+++||+ ||++.+.++..+..++.+++...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~--- 299 (399)
T PRK05122 227 LASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLA--- 299 (399)
T ss_pred HHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh---
Confidence 3445566666778888764 4653 445566677778888999999999997 99999988888777777666553
Q ss_pred cccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHH
Q 010358 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (512)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~ 239 (512)
.+...++++.++.|++.+...+.......|.+|++. |++.+++++...+
T Consensus 300 -------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~ 348 (399)
T PRK05122 300 -------------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLD 348 (399)
T ss_pred -------------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHH
Confidence 344556677888999998888888888888888776 9999999999999
Q ss_pred HHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhccccccc
Q 010358 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 286 (512)
Q Consensus 240 lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~ 286 (512)
+|..++|.+.|++.+..||++.|++.+++.++++++....+++.+++
T Consensus 349 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (399)
T PRK05122 349 LSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRA 395 (399)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999988887777766665554444443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.8e-12 Score=130.62 Aligned_cols=172 Identities=15% Similarity=0.145 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
.++.+.+..++..++.+++..++|.|+++.+|++..+++.+.+.+.++..++.+++|+++||+ |||+++.....+..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~ 284 (394)
T PRK03699 206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVL 284 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHH
Confidence 445555566666677788889999999999999999999999999999999999999999998 9999888776665554
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
..++... .+...+.+..++.|++.++..+...+...+..|.+ ++.
T Consensus 285 ~~~~~~~----------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~ 329 (394)
T PRK03699 285 MYLFVNT----------------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPK 329 (394)
T ss_pred HHHHHHc----------------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHH
Confidence 4444332 23334455566778877777788888888877643 345
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Q 010358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~ 277 (512)
..++.+...++|+.++|.+.|++.+..|++..|++.+++.++++++..
T Consensus 330 ~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (394)
T PRK03699 330 LVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCI 377 (394)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHH
Confidence 567777788999999999999999999999999887777666654433
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.8e-12 Score=135.25 Aligned_cols=152 Identities=15% Similarity=0.137 Sum_probs=124.2
Q ss_pred HHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcc
Q 010358 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (512)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~ 169 (512)
.....|+.+++|-+ ....++.+.+.+...+..++.|.|||.+ |||+.++++.++.++|.++.+.+
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA------------- 128 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATA------------- 128 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcC-------------
Confidence 45567888888875 4566778889999999999999999987 99999999999999999999887
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHH
Q 010358 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (512)
Q Consensus 170 ~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~ 249 (512)
++...++.+..+.|+|.|... +....++|..|.+. |..+..+......+....+|.++
T Consensus 129 ---------------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia 186 (599)
T PF06609_consen 129 ---------------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIA 186 (599)
T ss_pred ---------------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHH
Confidence 678899999999999976654 55666899999877 87777776666666666788888
Q ss_pred HhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 250 VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 250 ~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
..+..+.+|||.|++.++...+++++.++
T Consensus 187 ~~~~~~~~WRw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 187 QLFAAHSGWRWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred HHhccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 77777789999999998887766655433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-11 Score=137.89 Aligned_cols=132 Identities=9% Similarity=0.009 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHH
Q 010358 111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL 190 (512)
Q Consensus 111 ~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l 190 (512)
..+..++..++.+++|+++||+ |||+++.++.++..++.+++++. .+...+
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~----------------------------~s~~~l 651 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFG----------------------------NSESAM 651 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHH----------------------------ccHHHH
Confidence 4445577788999999999998 99999999988888877776654 233445
Q ss_pred HHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHH
Q 010358 191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (512)
Q Consensus 191 ~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~ 270 (512)
++.+++.+++.++..+...++++|.+|++. |++++++.+....+|++++|.+++++.+. +....|++.+++.+
T Consensus 652 l~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~ll 724 (742)
T TIGR01299 652 IALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALA 724 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHH
Confidence 566677777777788889999999999887 99999999999999999999999988764 45667777776666
Q ss_pred HHHHHHHh
Q 010358 271 ISNMLFFI 278 (512)
Q Consensus 271 i~~i~~~~ 278 (512)
++.++.++
T Consensus 725 l~~ll~~~ 732 (742)
T TIGR01299 725 CGGLLALK 732 (742)
T ss_pred HHHHHHHh
Confidence 65554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-11 Score=124.64 Aligned_cols=173 Identities=20% Similarity=0.232 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHH-HHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYLA 148 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~-~i~~~~~l~~i 148 (512)
.++......++..........+.+.|+.+.+|.+..+.+........+..++.++.|+++||+ |||+ .+.++.++..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i 254 (352)
T cd06174 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAAL 254 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence 334444555666666777778889999888899999999999999999999999999999998 9999 99999988888
Q ss_pred HHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhh
Q 010358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (512)
Q Consensus 149 g~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (512)
+.+.+... .+...+++..++.+++.+...+...++..|..|+++ |+
T Consensus 255 ~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~ 300 (352)
T cd06174 255 GLLLLALA----------------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RG 300 (352)
T ss_pred HHHHHHHh----------------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HH
Confidence 87777664 345667788899999999999999999999999877 99
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Q 010358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (512)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~ 277 (512)
+.+++++...++|..++|.+.+++.+..+|++.|.+.++..+++.++.+
T Consensus 301 ~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 301 TASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 9999999999999999999999999999999999988888777666543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3e-11 Score=127.89 Aligned_cols=176 Identities=10% Similarity=0.062 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchHH-HHHHHHHHHHHHHH
Q 010358 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTIYLAGLT 151 (512)
Q Consensus 76 ~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~---~GR~~-~i~~~~~l~~ig~~ 151 (512)
+..+...+.+..+..+++.|+++++|++...++.+..+..+...+..|+.|+++||. +|||| .++++.+...+..+
T Consensus 16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~ 95 (444)
T PRK09669 16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCL 95 (444)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHH
Confidence 334555665667778899999999999999999999999999999999999999993 38755 45566666666554
Q ss_pred HHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHH
Q 010358 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (512)
Q Consensus 152 ~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (512)
++... |.... ......+++...+.+.+......+..++.+|+.++.+ | |.+..
T Consensus 96 l~f~~---p~~~~-------------------~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~--e---R~~l~ 148 (444)
T PRK09669 96 LTFYT---PDFGA-------------------TGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR--E---RHSLQ 148 (444)
T ss_pred HHHhC---CCCCc-------------------chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH--H---HHHHH
Confidence 44332 11110 1344555555556666666777778889999885432 2 78888
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhh-------ccchHHHHHHHHHHHHHHHHHHHh
Q 010358 232 NFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~l~~-------~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
++.....++|+.+++.+...+.. ..||+..+.+.+++.++..++.++
T Consensus 149 ~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~ 202 (444)
T PRK09669 149 SWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFF 202 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 88777778877777654433322 346877777666665555444333
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.6e-12 Score=127.51 Aligned_cols=167 Identities=16% Similarity=0.083 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 010358 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (512)
Q Consensus 73 ~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~ 152 (512)
.+....++..+....+..+.+.|. +++|.+..+++.+...+.++..++.++.|+++||+ |||+.+.++.++..++.++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~ 286 (377)
T TIGR00890 209 VLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGMAA 286 (377)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHH
Confidence 333334444444444555666665 56889888888889999999999999999999998 9999999988888877766
Q ss_pred HhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHH
Q 010358 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (512)
Q Consensus 153 l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~ 232 (512)
+..... .+...+++..++.+++.+...+..+++..|.+|+++ |++.++
T Consensus 287 ~~~~~~--------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g 334 (377)
T TIGR00890 287 MLFIPM--------------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYG 334 (377)
T ss_pred HHHccc--------------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhH
Confidence 655310 122334455667788888888888889999999887 999999
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHH
Q 010358 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (512)
Q Consensus 233 ~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~ 273 (512)
+++...++|..++|.+.+++.++.||++.|.+.+++.++++
T Consensus 335 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 335 FLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 99999999999999999999999999999988777665543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-11 Score=130.88 Aligned_cols=177 Identities=16% Similarity=0.120 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTIAIFTTIYL 147 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~G--R~~~i~~~~~l~~ 147 (512)
.++.+.+..++..+.++++..+++.|+.+++|++..+++...+.+.++..++.+++|+++||+.+ |++......+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~ 323 (434)
T PRK11663 244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence 45555555666666777788899999998999999999999999999999999999999999732 2332222222112
Q ss_pred HHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhh
Q 010358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (512)
Q Consensus 148 ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (512)
+....+... +. .+.....+..+.+|++..+.........+|.+|++. |
T Consensus 324 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 371 (434)
T PRK11663 324 LSVGSLWLM-------PF-------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------A 371 (434)
T ss_pred HHHHHHHHc-------cc-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------H
Confidence 222111111 00 122222333334444333333344556788888776 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
++..++.+...++|+.++|.+.+++.+..||+..|++.+++.+++.++.+.
T Consensus 372 g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 372 GAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred HhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888777666554443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.1e-12 Score=130.69 Aligned_cols=171 Identities=14% Similarity=0.050 Sum_probs=130.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 010358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (512)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~ 146 (512)
+++.++......++....++.+..+++.|+++++|.+..+++.......++..++.+++|+++||+ |||+.+.++..+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~ 295 (394)
T TIGR00883 217 HRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLA 295 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHH
Confidence 333466666777777888888889999999999999999999888888899999999999999998 9999877655544
Q ss_pred HHHH-HHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhh
Q 010358 147 LAGL-TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (512)
Q Consensus 147 ~ig~-~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (512)
.+.. ..+.... .. .+...+++...+.+++.+...+...+.+.|.+|++.
T Consensus 296 ~~~~~~~~~~~~------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~----- 345 (394)
T TIGR00883 296 ALLAVPLLMALL------DS-------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV----- 345 (394)
T ss_pred HHHHHHHHHHHh------cC-------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc-----
Confidence 4322 2221110 00 234455666777888888888999999999999887
Q ss_pred hhhhHHHH-HHHHHHHHHHHHhHHHHhhhhccc-hHHHHHHHHHHH
Q 010358 226 HLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAM 269 (512)
Q Consensus 226 ~r~~~~~~-~~~~~~lg~~l~p~i~~~l~~~~g-w~~~f~i~~~~~ 269 (512)
|++++++ +..+..+|+.++|.++|++.++.| |++.++..+++.
T Consensus 346 -~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 346 -RYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred -eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 8888887 556677899999999999999988 887766555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-11 Score=120.00 Aligned_cols=196 Identities=12% Similarity=0.004 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcc
Q 010358 80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (512)
Q Consensus 80 ~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~ 159 (512)
.+....-.+...+.+-+....+.+..+..++......+..++...+|.++|++ |||+...+......+.-++-..+
T Consensus 88 mad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s--- 163 (528)
T KOG0253|consen 88 MADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS--- 163 (528)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC---
Confidence 33333333444445555667788888889998888999999999999999998 99998877776555444443333
Q ss_pred cccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHH
Q 010358 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (512)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~ 239 (512)
.|+..+++.+.+.++|.|+ .|...++-.|..|... |..-.-.. ....
T Consensus 164 -------------------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~wa 210 (528)
T KOG0253|consen 164 -------------------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWA 210 (528)
T ss_pred -------------------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHH
Confidence 5778899999999999999 8999999999998766 55544444 5566
Q ss_pred HHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCchHHHHHHHHHHHhhhccccCC
Q 010358 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSS 313 (512)
Q Consensus 240 lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 313 (512)
+|.++...++=.+..++||||-.........+.....+....--|..-.+|++.+.+... ..+.|-.+.++|-
T Consensus 211 ig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL-~kiArmNg~qlpl 283 (528)
T KOG0253|consen 211 IGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETL-HKIARMNGKQLPL 283 (528)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHH-HHHHHhcCCCCCc
Confidence 788777777766777889999876665444444433333332233444566666554333 3333434445553
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-11 Score=124.90 Aligned_cols=157 Identities=10% Similarity=0.060 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCC
Q 010358 85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164 (512)
Q Consensus 85 ~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~ 164 (512)
......+++.|+++++|.+..+++.+.....+...++.+++|+++||+ |||+++.++.++..++...+...
T Consensus 215 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~-------- 285 (375)
T TIGR00899 215 NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAAD-------- 285 (375)
T ss_pred HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHH--------
Confidence 334456778999999999999998887777777778889999999998 99999888776555444333332
Q ss_pred CCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHH
Q 010358 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 244 (512)
Q Consensus 165 ~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l 244 (512)
.+...+++...+.+++.+...+....+..|.+|+ + +++++++++...++|..+
T Consensus 286 --------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~~ 338 (375)
T TIGR00899 286 --------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTGRVGWII 338 (375)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHHHHHHHH
Confidence 3445566667778888887778888888888874 3 568999999999999999
Q ss_pred HhHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Q 010358 245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (512)
Q Consensus 245 ~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~ 277 (512)
+|.+.+++.+..||+..|++.++..+++.++..
T Consensus 339 g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 339 AGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988877766666543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=3e-11 Score=123.93 Aligned_cols=180 Identities=13% Similarity=0.023 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHH-HHHHHHHHH
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYL 147 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~-i~~~~~l~~ 147 (512)
+.++...+..++.....+.+..+++.|+.+.+|.+..+++.+.....++..++.+++|+++||+ |||+. +........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence 3456666777777888888888999999999999999999999999999999999999999998 98861 111111111
Q ss_pred HHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhh
Q 010358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (512)
Q Consensus 148 ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (512)
++.+...+....... .+.....+...+++.+..+..+...++.+|.+|+++ |
T Consensus 294 ~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 345 (399)
T TIGR00893 294 IAGLVLSLLMFATNY----------------------VNIPYAALALVALGFFGLGAGAIGWALISDNAPGNI------A 345 (399)
T ss_pred HHHHHHHHHHHHhcc----------------------chhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhH------H
Confidence 111111111000000 111222333333343333478889999999999888 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHhhhhccc-hHHHHHHHHHHHHHHHHHHH
Q 010358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF 277 (512)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~i~~~ 277 (512)
++.+++++...++|..++|.+.+++.+..| |++.|++.+++.+++.++.+
T Consensus 346 g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 346 GLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 99999888777666655543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.8e-10 Score=112.08 Aligned_cols=173 Identities=18% Similarity=0.160 Sum_probs=147.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 010358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (512)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ 147 (512)
|..+..++++.+--|-...++- .+..-+.+++|+|.+.+++..++-.+...+..++..+|+-|+ |-.+.+..++++.+
T Consensus 11 ~~li~gIvlia~NLR~~itsvg-PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~ 88 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVG-PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIA 88 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhh-hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHH
Confidence 4556666666776777775554 467788999999999999999999999999999999999997 99999999999988
Q ss_pred HHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhh
Q 010358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (512)
Q Consensus 148 ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (512)
+|.++=... +...++.+-.+.|+|.+..+...++++-+-||.+ .
T Consensus 89 ~G~~iR~~~-----------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~ 132 (395)
T COG2807 89 AGILIRSLG-----------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------V 132 (395)
T ss_pred HHHHHHhcc-----------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------h
Confidence 887766552 4567888889999999999999999999999965 4
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHh
Q 010358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~l~~~~-gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
+..++.|..+.++|+.+++.+...+.++. ||+....+-+...++++++++-
T Consensus 133 ~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP 184 (395)
T COG2807 133 GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP 184 (395)
T ss_pred hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh
Confidence 78889999999999999999999998887 7999999888888888777654
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-11 Score=126.41 Aligned_cols=164 Identities=12% Similarity=0.037 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHhhHhcCCChh---HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhh
Q 010358 80 AERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (512)
Q Consensus 80 ~~~~~~~~v~~~l~~yl~~~l~~s~~---~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~ 156 (512)
+..+....+.+.++.|+.+..+.... ..+.+.....++..++.++.|+++||+ |||+++.++..+..++.+++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~ 308 (408)
T PRK09874 230 IIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSFV 308 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHh
Confidence 33444445566778888775543322 234455556677778888999999998 99999998887776666555443
Q ss_pred hcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHH
Q 010358 157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236 (512)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~ 236 (512)
.+...+++.+++.|++.+...+...+.+.+..|++. +++.+++++.
T Consensus 309 ----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~ 354 (408)
T PRK09874 309 ----------------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQS 354 (408)
T ss_pred ----------------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHH
Confidence 244566777888999999989998888888888777 8999999999
Q ss_pred HHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 237 ~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
..++|..+||.++|++.+..||++.|++.+++.+++.+..+.
T Consensus 355 ~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 355 FRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988887776665544
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.2e-11 Score=129.25 Aligned_cols=152 Identities=16% Similarity=0.126 Sum_probs=116.3
Q ss_pred HHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCC
Q 010358 86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (512)
Q Consensus 86 ~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~ 165 (512)
+.+..+++.|+++++|++..+++.+.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++.... .
T Consensus 292 ~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~-------~ 363 (496)
T PRK03893 292 WPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIG-------G 363 (496)
T ss_pred chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhcc-------c
Confidence 34667899999989999999999999999999999999999999997 999998887766555443332220 0
Q ss_pred CCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 010358 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (512)
Q Consensus 166 ~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~ 245 (512)
.+...+.+..++.++...+..+..++++.|.+|++. |++.+++++...++|+.++
T Consensus 364 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lg 418 (496)
T PRK03893 364 -------------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALA 418 (496)
T ss_pred -------------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHH
Confidence 233333344444443333445667788899999877 9999999999999999999
Q ss_pred hHHHHhhhhccchHHHHHHHHHHHH
Q 010358 246 FTLVVYIQMEHGWGSAFGALAIAMG 270 (512)
Q Consensus 246 p~i~~~l~~~~gw~~~f~i~~~~~~ 270 (512)
|.+.|++.+.+||+..+.+.++...
T Consensus 419 p~l~g~l~~~~g~~~~~~~~~~~~~ 443 (496)
T PRK03893 419 PILGALIAQRLDLGTALASLSFSLT 443 (496)
T ss_pred HHHHHHHhccCChHHHHHHHHHHHH
Confidence 9999999999999988765554443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.8e-10 Score=115.82 Aligned_cols=176 Identities=12% Similarity=0.000 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHH--HHHHHHHHHHHHHHH-HHHHhhccchHHHHHHHHHHHH
Q 010358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNA--VNNFLGISQASSVLG-GFLADAYLGRYWTIAIFTTIYL 147 (512)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~--~~~~~~~~~l~~l~~-G~LsD~~~GR~~~i~~~~~l~~ 147 (512)
...+....+.+.+.+..+.+.+|.|+++ .|.+..+.+.. .........+.+++. ++++||+ ||||.+++...+..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLRE-DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence 4456667778888877777888888865 59999999986 344455554455544 6789997 99998766553322
Q ss_pred H-HHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 148 A-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 148 i-g~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
. ....++.. . +. ......+....++.++..+...+...++..|..++++
T Consensus 81 ~~~~~~~~~~--~----~~------------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------ 130 (390)
T TIGR02718 81 SACLASLALV--G----PD------------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------ 130 (390)
T ss_pred HHHHHHHHcC--C----cc------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------
Confidence 2 22222211 0 00 0112233334444556666666777777777776655
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 227 r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
++.+.+....+..+|..+|+.+.+++.++.||+..|++.+++.++..+..+.
T Consensus 131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777778889999999999999999999999999988877665555433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.8e-11 Score=123.79 Aligned_cols=165 Identities=10% Similarity=-0.022 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhh
Q 010358 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (512)
Q Consensus 76 ~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~ 155 (512)
...++....++.+..+++.|+.+ .|++..+++.....+.++..++.++.|+++||+ |||+.+.++.+...++.+++..
T Consensus 227 ~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~ 304 (406)
T PRK11551 227 ISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALAA 304 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455666777788888875 799999999999999999999999999999998 9999988766655555444433
Q ss_pred hhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHH
Q 010358 156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235 (512)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~ 235 (512)
. .+...+++..++.+++.++..+...++..|.+|+++ |++.+++++
T Consensus 305 ~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~ 350 (406)
T PRK11551 305 A----------------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAV 350 (406)
T ss_pred c----------------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHH
Confidence 2 233445555667788777788888899999999888 999999999
Q ss_pred HHHHHHHHHHhHHHHhhhhccc-hHHHHHHHHHHHHHHHHHH
Q 010358 236 LSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLF 276 (512)
Q Consensus 236 ~~~~lg~~l~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~i~~ 276 (512)
....+|..++|.+.|++.++.+ |...+++...+.+++.+..
T Consensus 351 ~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (406)
T PRK11551 351 AVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAA 392 (406)
T ss_pred HhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988754 5555655555544444433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-10 Score=121.81 Aligned_cols=176 Identities=15% Similarity=0.048 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 010358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (512)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~ 150 (512)
.+.+.+..++..++++++..+++.|+.+ +|.+..+++...+.+.++..++.++.|+++||+ |||+.+.++..+..++.
T Consensus 207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~~ 284 (393)
T PRK09705 207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVGF 284 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHH
Confidence 4444555566677888888999999986 799999999999999999999999999999997 99999988887777766
Q ss_pred HHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCC-CChhhhhhhhh
Q 010358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDR 229 (512)
Q Consensus 151 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~-~~~~~~~~r~~ 229 (512)
.++... + .+...+ ...+.+++.+...+.......+.+++ ++ +++
T Consensus 285 ~~~~~~-------~--------------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~ 329 (393)
T PRK09705 285 CGFIWL-------P--------------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAI------AGK 329 (393)
T ss_pred HHHHHc-------c--------------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHH------HHH
Confidence 554432 1 111112 12356777777778777777788764 33 899
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhccc-hHHHHHHHHHHHHHHHHHHHhhcccc
Q 010358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPLY 283 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~i~~~~~~~~~ 283 (512)
.+++.+...++++.++|.+.|++.+..| |...|.+.++..++.++......++.
T Consensus 330 ~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (393)
T PRK09705 330 LVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPAR 384 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999887 88888887776666655554444433
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.2e-11 Score=125.83 Aligned_cols=174 Identities=10% Similarity=0.028 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhcCCC--------hhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 010358 76 GNEMAERMAYFGLSVNMVTFMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (512)
Q Consensus 76 ~~~~~~~~~~~~v~~~l~~yl~~~l~~s--------~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ 147 (512)
+..++..........+++.|+++ .+.+ ....+...+...+...++.++.|+++||+ |||+++.++.++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~~~~ 292 (418)
T TIGR00889 215 FFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLVAWA 292 (418)
T ss_pred HHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence 33444444444455667888765 4443 35568888888888889999999999998 99999999999888
Q ss_pred HHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhh
Q 010358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (512)
Q Consensus 148 ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (512)
++..++..... +..+...+++..++.+++.+...+....+++|.+|++. |
T Consensus 293 v~~~l~~~~~~------------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~ 342 (418)
T TIGR00889 293 LRFGFFAYGDP------------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------R 342 (418)
T ss_pred HHHHHHHHcCc------------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence 77666655310 00234556777888999988888888999999999877 9
Q ss_pred hhHHHHHH-HHHHHHHHHHhHHHHhhhhc------cchHHHHHHHHHHHHHHHHHHHhhcc
Q 010358 228 DRFFNFFY-LSVTVGAIVAFTLVVYIQME------HGWGSAFGALAIAMGISNMLFFIGTP 281 (512)
Q Consensus 228 ~~~~~~~~-~~~~lg~~l~p~i~~~l~~~------~gw~~~f~i~~~~~~i~~i~~~~~~~ 281 (512)
++.+++++ ....+|..+||.++|++.++ +||++.|.+.+++.+++.+++++..+
T Consensus 343 g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 343 ASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999987 56789999999999999887 46999998887776666655554443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-10 Score=123.96 Aligned_cols=175 Identities=15% Similarity=0.086 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 010358 72 LFIFGNEMAERMAYFGLSV---NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (512)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~---~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~i 148 (512)
|.+.+..|+..+..+++.. .+...+.++++.+..+.+++.++..+...+..|+.+.+.||+ |.|.+++++.++..+
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence 4455555555555555543 346667889999999999999999999999999999999998 999999999999999
Q ss_pred HHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHH-HHHHHhhcChhhhhhhHhhccCCCCChhhhhhh
Q 010358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (512)
Q Consensus 149 g~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~-~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (512)
|.++..++ .+.+.+++.. ++.|+|.|.........++..|+. . |
T Consensus 124 g~~lssF~----------------------------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-k------R 168 (509)
T KOG2504|consen 124 GLLLSSFA----------------------------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-K------R 168 (509)
T ss_pred HHHHHHHH----------------------------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-H------H
Confidence 99999887 5666666655 678899999888888888877763 3 8
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhccc
Q 010358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (512)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~ 282 (512)
+.+.++-..+..+|..+-|.+..++.+.+|||+.+++.+.+.+-.++.....++.
T Consensus 169 ~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~ 223 (509)
T KOG2504|consen 169 ALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPL 223 (509)
T ss_pred HHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8888888888899999999999999999999999998887775555555554543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-15 Score=159.65 Aligned_cols=137 Identities=20% Similarity=0.238 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchh
Q 010358 106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW 185 (512)
Q Consensus 106 ~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~ 185 (512)
..++..+...++..++.+++|+++||+ |||+++.++.++.+++.++..++... .
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~-------------------------~ 100 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY-------------------------N 100 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc-------------------------c
Confidence 456788899999999999999999998 99999999999999999888886110 1
Q ss_pred hHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhh---ccchHHHH
Q 010358 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---EHGWGSAF 262 (512)
Q Consensus 186 ~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~---~~gw~~~f 262 (512)
+...+.++|++.|++.|+..+....++.|..|++. |+...++...+..+|..++..+.-.+.+ ..+||+.+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence 67889999999999999999999999999999888 9988888888888888888776644433 34599998
Q ss_pred HHHHHHHHHHHH
Q 010358 263 GALAIAMGISNM 274 (512)
Q Consensus 263 ~i~~~~~~i~~i 274 (512)
++.++..++.++
T Consensus 175 ~~~~~~~l~~~~ 186 (451)
T PF00083_consen 175 IFGAIPSLLVLL 186 (451)
T ss_pred cccccccccccc
Confidence 877766544333
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-11 Score=108.09 Aligned_cols=131 Identities=20% Similarity=0.232 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHH
Q 010358 113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT 192 (512)
Q Consensus 113 ~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~ 192 (512)
.+..+..++.++.|+++||+ |||+++.++..+..++.+++... .+...+.+
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~ 56 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALS----------------------------SNITVLII 56 (141)
T ss_pred eehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHh----------------------------ccHHHHHH
Confidence 34567778899999999998 99999999988888877766554 35566778
Q ss_pred HHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHH
Q 010358 193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (512)
Q Consensus 193 ~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~ 272 (512)
.+++.+++.+...+...++..|.+|+++ |++.+++++....+|..++|.+.+++.+..+|++.|++.++..+++
T Consensus 57 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (141)
T TIGR00880 57 ARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA 130 (141)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence 8899999999989999999999999887 9999999999999999999999999999999999998877766655
Q ss_pred HHHHHh
Q 010358 273 NMLFFI 278 (512)
Q Consensus 273 ~i~~~~ 278 (512)
.+....
T Consensus 131 ~~~~~~ 136 (141)
T TIGR00880 131 FILLAF 136 (141)
T ss_pred HHHHhh
Confidence 554443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-10 Score=122.22 Aligned_cols=175 Identities=10% Similarity=0.010 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHh----hccch-HHHHHHHHHHHHHHH
Q 010358 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGR-YWTIAIFTTIYLAGL 150 (512)
Q Consensus 76 ~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD----~~~GR-~~~i~~~~~l~~ig~ 150 (512)
+..+...+.+..+..+++.|+++.+|++...++.+..+..+..++..|+.|+++| |+ || |+-++++.+...++.
T Consensus 13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~~ 91 (473)
T PRK10429 13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVVL 91 (473)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHHH
Confidence 3445566667677889999999999999999999999999999999999999999 65 98 555666777766666
Q ss_pred HHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhH
Q 010358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (512)
Q Consensus 151 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~ 230 (512)
+++... |.. + .......+++...+..++......+..++++|+.++.++ |.+.
T Consensus 92 ~llf~~---p~~-~------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e-----R~~l 144 (473)
T PRK10429 92 FLLFSA---HLF-E------------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE-----REQL 144 (473)
T ss_pred HHHHcC---CCC-C------------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH-----HHHH
Confidence 555432 110 0 002334444555566778888888888999998854331 8888
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhh-------ccchHHHHHHHHHHHHHHHHHHHh
Q 010358 231 FNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 231 ~~~~~~~~~lg~~l~p~i~~~l~~-------~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
+++-....++|+.+.+.+...+.+ ..||++...+.+++.++..++.+.
T Consensus 145 ~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~ 199 (473)
T PRK10429 145 VPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLR 199 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 887666677776665554433221 235666655555555544444433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-10 Score=120.18 Aligned_cols=170 Identities=15% Similarity=-0.038 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 010358 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (512)
Q Consensus 74 i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l 153 (512)
..+..++.....++...+++.|+.+.+|.+..+++.+...+.++..++.++.|+++||+ |||+. .++..+..++...+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~-~~~~~~~~~~~~~l 287 (390)
T PRK03545 210 LYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFL-LIAIALLLVCLLLL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHH-HHHHHHHHHHHHHH
Confidence 33344444555566667888899888999999999999999999999999999999997 98764 44444444333332
Q ss_pred hhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHH
Q 010358 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (512)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~ 233 (512)
.... .+...+++..++.|++.+...+...+.+.+..| +. |++++++
T Consensus 288 ~~~~---------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~ 333 (390)
T PRK03545 288 LPAA---------------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMAL 333 (390)
T ss_pred HHHh---------------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHH
Confidence 2210 244556667778888877766777777777766 34 7889999
Q ss_pred HHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhh
Q 010358 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (512)
Q Consensus 234 ~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~ 279 (512)
++...++|..+||.++|++.+++|++..|++.+++.++++++....
T Consensus 334 ~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 334 FSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence 9988999999999999999999999999998888877777766543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.3e-11 Score=123.95 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=126.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 010358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (512)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l 145 (512)
++|..+..+....++..+..+++..+++.|+.+++|++..+++.+.....++..++.++.|+++||+ |||+.+.++.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~ 313 (405)
T TIGR00891 235 KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLA 313 (405)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHH
Confidence 3444444444444455555556777889999999999999999999999999999999999999997 999998887765
Q ss_pred HHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhh
Q 010358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (512)
Q Consensus 146 ~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (512)
..+..+.+... . .+...+.++.++.++..++..+...+++.|.+|++.
T Consensus 314 ~~~~~~~~~~~-------~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 361 (405)
T TIGR00891 314 GQLLIIPVFAI-------G--------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ----- 361 (405)
T ss_pred HHHHHHHHHHh-------C--------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch-----
Confidence 43322222111 0 234455556566777767777788889999999887
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHhhhhccc-hHHHHHH
Q 010358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA 264 (512)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~g-w~~~f~i 264 (512)
|++.+++.+...++|+.++|.+.|++.++.| |+..|..
T Consensus 362 -~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 362 -RAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred -hHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 9999999999999999999999999999998 8776654
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.5e-11 Score=123.24 Aligned_cols=160 Identities=12% Similarity=-0.021 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCC
Q 010358 85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164 (512)
Q Consensus 85 ~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~ 164 (512)
.+++..+++.|+.+.+|.+....+.+.+.+.++..++.++.++++||. ++++.+.++.++..++.+++.+.
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~-------- 309 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM-------- 309 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc--------
Confidence 345667789999988999999999999999999999999999999986 78888888877777776665543
Q ss_pred CCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHH
Q 010358 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 244 (512)
Q Consensus 165 ~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l 244 (512)
.+....+++.++.|++.+...+...+++.|.+|++. |++.+++++...++|..+
T Consensus 310 --------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~ 363 (417)
T PRK10489 310 --------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAI 363 (417)
T ss_pred --------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhH
Confidence 344556667778888888777777888999999877 999999999999999999
Q ss_pred HhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhh
Q 010358 245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (512)
Q Consensus 245 ~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~ 279 (512)
||.+.|++.+..|++..+.+.++..++..++....
T Consensus 364 g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 364 GAALLGGLGAMMTPVASASASGFGLLIIGVLLLLV 398 (417)
T ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998888877666555544444443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.7e-11 Score=122.39 Aligned_cols=160 Identities=14% Similarity=0.100 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhccc
Q 010358 81 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160 (512)
Q Consensus 81 ~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~ 160 (512)
..+.+..+..+.+.|+.+ .|++. .+.....+..+..++.++.|++.||+ |||+.+.++..+..++.+++...
T Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~---- 299 (392)
T PRK12382 228 QGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLA---- 299 (392)
T ss_pred HHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHc----
Confidence 344555666777888765 46543 45556667777788999999999997 99999998888887777665543
Q ss_pred ccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHH
Q 010358 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240 (512)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~l 240 (512)
.+...++++.++.+++.+...+...+...|.+|+++ |++.+++++....+
T Consensus 300 ------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~ 349 (392)
T PRK12382 300 ------------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDI 349 (392)
T ss_pred ------------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHH
Confidence 234556677788888888888888888899998777 99999999999999
Q ss_pred HHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 241 g~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
|..++|.+.+++.++.||++.|.+.+++.++++++.+.
T Consensus 350 g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 350 AYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999988877776666544
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-10 Score=123.40 Aligned_cols=161 Identities=15% Similarity=0.065 Sum_probs=112.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 010358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (512)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~ 146 (512)
+|+.........++....++++..++|.|+++.+|++..+++.....+.++..++.+++|+++||+ |||+++.++..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~ 314 (434)
T PRK15075 236 NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLA 314 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 343333334444556677778889999999999999999888888888888889999999999998 9999887765443
Q ss_pred HHHHH-HHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhh
Q 010358 147 LAGLT-GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (512)
Q Consensus 147 ~ig~~-~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (512)
++... .+..... . .+...+.+..++.+++.+...+...++..|.+|++.
T Consensus 315 ~~~~~~~~~~~~~------~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~----- 364 (434)
T PRK15075 315 ILTAYPALSWLVA------A-------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV----- 364 (434)
T ss_pred HHHHHHHHHHHHc------C-------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc-----
Confidence 32211 1111100 0 122223334445556666666667788899999888
Q ss_pred hhhhHHHHH-HHHHHHHHHHHhHHHHhhhhccchH
Q 010358 226 HLDRFFNFF-YLSVTVGAIVAFTLVVYIQMEHGWG 259 (512)
Q Consensus 226 ~r~~~~~~~-~~~~~lg~~l~p~i~~~l~~~~gw~ 259 (512)
|++++++. .++..+++.++|.+.+++.+..|+.
T Consensus 365 -rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 365 -RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred -cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 89999884 4444456888999999999988853
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.6e-11 Score=128.08 Aligned_cols=179 Identities=15% Similarity=0.078 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA- 148 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~i- 148 (512)
.++.+.+..++.....+++..++|.|+++..|++..++++....+.+...++.+++|+++||+ |+++....+..+..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~ 330 (438)
T TIGR00712 252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLV 330 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHH
Confidence 455555566666677788889999999999999999999998889999999999999999997 654322233322221
Q ss_pred --HHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 149 --GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 149 --g~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
+.+.+... +. .+.....+..++.|++..+..........|.+|++.
T Consensus 331 ~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 378 (438)
T TIGR00712 331 TIAVIVYWMN-------PA-------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------ 378 (438)
T ss_pred HHHHHHHHhc-------CC-------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------
Confidence 11111111 00 122223334444554443333333456778999877
Q ss_pred hhhHHHHHHHHHHHHH-HHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 010358 227 LDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (512)
Q Consensus 227 r~~~~~~~~~~~~lg~-~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~ 281 (512)
|+++.++++...++|+ .++|.+.|++.++.||...|++.+++.+++++..++..+
T Consensus 379 ~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 434 (438)
T TIGR00712 379 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 434 (438)
T ss_pred eeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988888875 689999999999999999998877776666666555443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.4e-10 Score=119.12 Aligned_cols=152 Identities=11% Similarity=0.032 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchHHHH-HHHHHHHHHHH
Q 010358 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTI-AIFTTIYLAGL 150 (512)
Q Consensus 75 ~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~---~GR~~~i-~~~~~l~~ig~ 150 (512)
.+..+...+.+..+.++++.|+++.+|++..+++.+.....+...+..++.|+++||. +||||.+ .++.+...+..
T Consensus 14 g~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~ 93 (448)
T PRK09848 14 SLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFS 93 (448)
T ss_pred ccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHH
Confidence 3455566777766778889999999999999999999999999999999999999995 3777755 55555454443
Q ss_pred HHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhH
Q 010358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (512)
Q Consensus 151 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~ 230 (512)
+++.... ....+ ......+++...+.+++.+...++..++..++..+.+ + |...
T Consensus 94 ~~~~~~~--~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--~---r~~~ 147 (448)
T PRK09848 94 VLVFWVP--TDWSH-------------------SSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ--S---RARL 147 (448)
T ss_pred HHHHhCc--CCCCc-------------------chHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH--H---HHHH
Confidence 3332210 00000 0223344445566778888888888887777766533 2 5555
Q ss_pred HHHHHH-----HHHHHHHHHhHHHHhh
Q 010358 231 FNFFYL-----SVTVGAIVAFTLVVYI 252 (512)
Q Consensus 231 ~~~~~~-----~~~lg~~l~p~i~~~l 252 (512)
.++-.+ ..+++..++|.+.+..
T Consensus 148 ~~~r~~~~~~~~~~~~~~~~p~i~~~~ 174 (448)
T PRK09848 148 GAARGIAASLTFVCLAFLIGPSIKNSS 174 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 555333 3445666666666543
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-11 Score=126.61 Aligned_cols=156 Identities=12% Similarity=0.089 Sum_probs=123.3
Q ss_pred HHHHHHHHHhhHhc---CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccC
Q 010358 87 GLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (512)
Q Consensus 87 ~v~~~l~~yl~~~l---~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~ 163 (512)
.....++.|+.+.+ +.+..+.+.+.+.......++.+++|+++||+ |||+.+.++.++..++.+++.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~------- 312 (420)
T PRK09528 241 VFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFA------- 312 (420)
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhc-------
Confidence 34445677776554 55666778888888888889999999999998 99999998888888877776654
Q ss_pred CCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHH-HHHHHHHHH
Q 010358 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGA 242 (512)
Q Consensus 164 ~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~-~~~~~~lg~ 242 (512)
.+...+++.+++.+++.+...+....++.+.+|++. +++.++. ++....+|.
T Consensus 313 ---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~ 365 (420)
T PRK09528 313 ---------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGA 365 (420)
T ss_pred ---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHH
Confidence 345566777888888888777788888999999776 7776655 677889999
Q ss_pred HHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Q 010358 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (512)
Q Consensus 243 ~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~ 277 (512)
+++|.+.|++.+..||+..|.+.+++.++..++.+
T Consensus 366 ~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 366 VFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987776655554443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-10 Score=118.71 Aligned_cols=176 Identities=14% Similarity=0.049 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH-HHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTIYLA 148 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~-~~~~l~~i 148 (512)
.++...+..++....++++..++|.|++ ++|++..+++.+...+.++..++.++.|+++||+ |||+.+. .+.+...+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~ 300 (402)
T TIGR00897 223 NVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGI 300 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHH
Confidence 3455555667777888888899999985 5899999999888888899999999999999997 9888764 23332333
Q ss_pred HHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhh
Q 010358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (512)
Q Consensus 149 g~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (512)
+.+.+..... ... .+...+++..++.|++.++..+. .....|..| ++ |+
T Consensus 301 ~~~~l~~~~~---~~~--------------------~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~------~g 349 (402)
T TIGR00897 301 FTLALYYIPQ---HFG--------------------HSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KH------KG 349 (402)
T ss_pred HHHHHHHHHH---ccC--------------------CcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-ch------hH
Confidence 2222222100 000 23445556667777777765443 455566544 45 89
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
+++++++....+|+.++|.+.+++.+.+||...|++.+++.+++.++..+
T Consensus 350 ~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 350 AAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888777666555444
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-10 Score=117.39 Aligned_cols=168 Identities=10% Similarity=-0.071 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
.++...+..++...+.+...++.+.|+++ +|.+....+........+..+..++.+++.||+ |+|+++.++.++..+.
T Consensus 206 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~~ 283 (382)
T TIGR00902 206 MNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVGR 283 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHHH
Confidence 45555666666677777888899999965 899999999988888888889999999999998 9999999999999988
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
.++++.. .+...+++...+.|+..+...+....++.+. |+++ +++
T Consensus 284 ~~~~~~~----------------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~ 328 (382)
T TIGR00902 284 WAIIGAI----------------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAK 328 (382)
T ss_pred HHHHHhH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHH
Confidence 8777665 5677788889999999999999999999987 7666 888
Q ss_pred HHHHHH-HHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHH
Q 010358 230 FFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (512)
Q Consensus 230 ~~~~~~-~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~ 275 (512)
+.++++ ....+|..++|.++|++.|+.|+ ..|++.+++.++++++
T Consensus 329 ~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 329 LQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 888876 56789999999999999999987 5677666666555444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-10 Score=122.45 Aligned_cols=177 Identities=9% Similarity=-0.007 Sum_probs=129.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (512)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~ 144 (512)
.++|..+...+++..+.... |++.. ....+.+++|++..+.+.+.++... ..++.+++|+++||+ |||+++.++.+
T Consensus 24 ~~Rw~~lva~~~~~~~~g~~-y~fsv-~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~-G~R~vllig~l 99 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTSFM-YAFNL-ISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYL-GPRPIFVLSMT 99 (591)
T ss_pred cchHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 44665555555555544443 34443 4557889999999999888776443 345666789999998 99999999999
Q ss_pred HHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhh
Q 010358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (512)
Q Consensus 145 l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~ 224 (512)
++.+|+++++++... ... .+.+.+++.+++.|+|.+...+.....+.++|| ++
T Consensus 100 l~~iG~ll~ala~~~--~i~--------------------~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~---- 152 (591)
T PTZ00207 100 VFCLGTLLFALTFQE--VIE--------------------GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN---- 152 (591)
T ss_pred HHHHHHHHHHHHhcc--ccc--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh----
Confidence 999999998885210 000 367888999999999999888888888999997 45
Q ss_pred hhhhhHHHHHHHHHHHHHHH-HhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 010358 225 THLDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (512)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~l-~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~ 276 (512)
|+...++...+..+|+.+ +++..+++.+ +|+..|++.+++.++..++.
T Consensus 153 --RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~vv~ll~ 201 (591)
T PTZ00207 153 --RGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALVVGILA 201 (591)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999975 5666666543 57777776666654443333
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-10 Score=120.44 Aligned_cols=185 Identities=13% Similarity=0.053 Sum_probs=148.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchH--HHHHHHHHH
Q 010358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY--WTIAIFTTI 145 (512)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~--~~i~~~~~l 145 (512)
.|.+...++..++.+-+...+......|.++++|++..+...+.....+...++.+++|++.||+ |-| +++.++.++
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~ 358 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLIL 358 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHH
Confidence 34566666777777888888999999999999999999999888889999999999999999998 988 888877776
Q ss_pred HHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhh
Q 010358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (512)
Q Consensus 146 ~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (512)
+.+-.+.-.+ ...+..... .+.+.+++.-++.|+..|+.++..-++.+++.|++.
T Consensus 359 ~~~i~~~g~~-G~~~~~~g~-------------------~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~----- 413 (477)
T PF11700_consen 359 WIIIPLYGLF-GFWPSFFGL-------------------KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR----- 413 (477)
T ss_pred HHHHHHHHHH-HhhhcccCc-------------------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch-----
Confidence 6432221111 000100000 344567777789999999999999999999999887
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHhhhhccc-hHHHHHHHHHHHHHHHHHHHhh
Q 010358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 279 (512)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~i~~~~~ 279 (512)
.+.+|++|.+..-..+++||.+.+.+.+.+| -|+++....++.+++++++...
T Consensus 414 -e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 414 -EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999887 8999988888887777776543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-10 Score=122.87 Aligned_cols=172 Identities=7% Similarity=-0.003 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH-
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY-LGRYWTIAIFTTIYL- 147 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~-~GR~~~i~~~~~l~~- 147 (512)
.++......++..++++....+++.|+++ +|++..+++.+.+...++..++.+++|+++||. +++++...++..+..
T Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 320 (455)
T TIGR00892 242 GFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN 320 (455)
T ss_pred hHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence 45555566667777777888889999865 799999999999999999999999999999984 244444443332222
Q ss_pred -HHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 148 -AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 148 -ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
++.+++... .+...+++.+++.|++.+...++..+.+.|.+|+++
T Consensus 321 ~l~~ll~~~~----------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------ 366 (455)
T TIGR00892 321 GLTHLLCALA----------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------ 366 (455)
T ss_pred HHHHHHHHHh----------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------
Confidence 222222222 355667778889999999999999999999999877
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHhhhhcc-chHHHHHHHHHHHHHHHHHH
Q 010358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLF 276 (512)
Q Consensus 227 r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~-gw~~~f~i~~~~~~i~~i~~ 276 (512)
+++.+++++...++|..+||.++|++.+.. +|++.|++.+++.+++.+..
T Consensus 367 ~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~ 417 (455)
T TIGR00892 367 FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFL 417 (455)
T ss_pred HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHH
Confidence 899999999999999999999999999887 49999998888766655543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-10 Score=113.62 Aligned_cols=174 Identities=15% Similarity=0.086 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 010358 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (512)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~ 151 (512)
..+...-+...+.. .....+.+.+++.++++..+++++...+..++.++++..|++.+|+ |+|+.+++++.++++|..
T Consensus 16 v~~t~lFfl~G~~~-~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~ 93 (422)
T COG0738 16 VLLTSLFFLWGFIT-CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAA 93 (422)
T ss_pred HHHHHHHHHHHHHh-hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence 33333333444433 3445688999999999999999999999999999999999999998 999999999999999988
Q ss_pred HHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHH
Q 010358 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (512)
Q Consensus 152 ~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (512)
++.-++. ...+..+++++++++.|.+...+..+++++.+.+++. -..-+
T Consensus 94 lF~pAa~-------------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rl 142 (422)
T COG0738 94 LFWPAAS-------------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRL 142 (422)
T ss_pred HHhhhhh-------------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHH
Confidence 8865422 1577889999999999999999999999999999865 45556
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhc-------------------cchHHHHHHHHHHHHHHHHHHHh
Q 010358 232 NFFYLSVTVGAIVAFTLVVYIQME-------------------HGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~l~~~-------------------~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
++......+|+.++|.+++++..+ -.|++.|.+.+...++..+....
T Consensus 143 nl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~ 208 (422)
T COG0738 143 NLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILL 208 (422)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 777778889999999999987662 13666776655554444444333
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-10 Score=117.74 Aligned_cols=152 Identities=16% Similarity=0.129 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhccccc
Q 010358 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (512)
Q Consensus 83 ~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l 162 (512)
+.+.....+++.|+++ .|.+..+++...+...++..++.++.|+++||+ |||+++.++.++..++.+.+. .
T Consensus 214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~------ 284 (381)
T PRK03633 214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S------ 284 (381)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h------
Confidence 3344455678888875 699998999888888899999999999999998 999998888777776654332 1
Q ss_pred CCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 010358 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (512)
Q Consensus 163 ~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~ 242 (512)
. ...+..+++.+++.+...|...+.+.|..|+++ ++...+.++...++|.
T Consensus 285 ----------------------~--~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~ 334 (381)
T PRK03633 285 ----------------------Q--AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGS 334 (381)
T ss_pred ----------------------h--HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHH
Confidence 0 122345566677666778888888889888765 6777777888899999
Q ss_pred HHHhHHHHhhhhccchHHHHHHHHHHHHHHH
Q 010358 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (512)
Q Consensus 243 ~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~ 273 (512)
.+||.++|++.|++||++.|.+.+.+.+++.
T Consensus 335 ~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~ 365 (381)
T PRK03633 335 LLGPSFTAMLMQNYSDNLLFIMIASVSFIYL 365 (381)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 9999999999999999999998777665443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.7e-10 Score=119.12 Aligned_cols=172 Identities=11% Similarity=0.047 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Q 010358 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (512)
Q Consensus 75 ~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~ 154 (512)
....++....+|++..++|.|+.+.+|++..+++...+....+..++.++.|+++||+ |||+++.++.++..+..+.+.
T Consensus 249 ~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~ 327 (432)
T PRK10406 249 LGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPIL 327 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHH
Confidence 3334445677888999999999999999998888888877777788888999999998 999988776654433322221
Q ss_pred hhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHH
Q 010358 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (512)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~ 234 (512)
.... .. .+....+....+..++.+...+....+.+|.||++. |++++++.
T Consensus 328 ~~~~-----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~ 377 (432)
T PRK10406 328 SALQ-----NV-------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLS 377 (432)
T ss_pred HHHH-----cC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHH
Confidence 1100 00 111111111222223333334556778899999988 99999996
Q ss_pred HHHHH-HHHHHHhHHHHhhhhccc-hHHHHHHHHHHHHHHHHHHHh
Q 010358 235 YLSVT-VGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 235 ~~~~~-lg~~l~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~i~~~~ 278 (512)
|...+ +++..+|.+.+++. .+| |...+++.++..+++++..++
T Consensus 378 ~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 378 YAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 65544 44556888888664 445 655666555555555444443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.1e-10 Score=120.13 Aligned_cols=171 Identities=11% Similarity=0.076 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHH-HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhh
Q 010358 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVN-NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA 157 (512)
Q Consensus 79 ~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~-~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~ 157 (512)
++..+..+....+.+.|+.+++|++..+.+.+.. ...++..++.+++|+++||+ |||+.+.++.++..++.+.+....
T Consensus 232 ~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l~ 310 (491)
T PRK11010 232 VLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLLS 310 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555667888988889999999998874 55678899999999999998 999887776665555443332211
Q ss_pred cccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHH
Q 010358 158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 237 (512)
Q Consensus 158 ~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~ 237 (512)
.. + .+...+.+..++..+..|...+...++..+..+++. +++.+++++..
T Consensus 311 ~~----~--------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~ 360 (491)
T PRK11010 311 IT----D--------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSAL 360 (491)
T ss_pred hc----c--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHH
Confidence 10 0 123333444455444445445666777888888777 77888999999
Q ss_pred HHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhc
Q 010358 238 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (512)
Q Consensus 238 ~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~ 280 (512)
.++|+.+++.+.|++.+..||+..|.+.+++.++++++....+
T Consensus 361 ~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 361 SAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988888777766665543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-10 Score=121.27 Aligned_cols=188 Identities=13% Similarity=-0.001 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~i 148 (512)
+.++...+..+......+.+..+ ..++.+++|++..+++.......++..++.+++|+++||+ |||+.+.++.++..+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~ 361 (481)
T TIGR00879 284 RLFLGVVLQWFQQFTGINAIMYY-SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAI 361 (481)
T ss_pred HHHHHHHHHHHHHHhCCeehHHH-HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 33334444444433334334444 4455567899988888888888888999999999999997 999999998887777
Q ss_pred HHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhh
Q 010358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (512)
Q Consensus 149 g~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (512)
+.+++.+...... .+. . ...+...+....++.+....+..+....+..|.+|++. |+
T Consensus 362 ~~~~~~~~~~~~~-~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~ 418 (481)
T TIGR00879 362 CLFVLGILGASFV-TGS---------------S-KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RP 418 (481)
T ss_pred HHHHHHHHhhccc-CCc---------------c-cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HH
Confidence 7666653211000 000 0 00122222222222222222344666777799999877 99
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 010358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (512)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~ 281 (512)
..+++.+...++|++++|.+.+++.++.||++.|++.+++.+++.++.++..+
T Consensus 419 ~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 419 KGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecc
Confidence 99999999999999999999999999999999998887776666665544333
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-10 Score=121.48 Aligned_cols=178 Identities=14% Similarity=0.078 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHh----hccchHHHH-HHHHHHHHHHHHHH
Q 010358 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGRYWTI-AIFTTIYLAGLTGI 153 (512)
Q Consensus 79 ~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD----~~~GR~~~i-~~~~~l~~ig~~~l 153 (512)
+...+.......+++.|+++.+|+++..++.+..+..+..++..|+.|.++| |+ ||||.. +++.++..++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~ll 89 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLL 89 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHh
Confidence 4455555566678999999999999999999999999999999999999999 76 976654 56777777776666
Q ss_pred hhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHH
Q 010358 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (512)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~ 233 (512)
.... |. +.+.......+++..++..++......+..++++|+.++.++ |.+..++
T Consensus 90 f~~~------p~--------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~ 144 (428)
T PF13347_consen 90 FSPP------PA--------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSW 144 (428)
T ss_pred hccc------cc--------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHH
Confidence 5430 10 000002334456666677888888899999999999986442 7888888
Q ss_pred HHHHHHHHHHHHhHHHHhhhh----c---cchHHHHHHHHHHHHHHHHHHHhhccc
Q 010358 234 FYLSVTVGAIVAFTLVVYIQM----E---HGWGSAFGALAIAMGISNMLFFIGTPL 282 (512)
Q Consensus 234 ~~~~~~lg~~l~p~i~~~l~~----~---~gw~~~f~i~~~~~~i~~i~~~~~~~~ 282 (512)
-.....+|..+...+.+.+.+ . .+|++...+.+++.++..++.....|+
T Consensus 145 ~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 145 RMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 777777777655555544432 2 168888887777776666665554444
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-10 Score=118.50 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH--HHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT--TIYL 147 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~--~l~~ 147 (512)
.++.+.+..++.....+++..+++.|+.+.+|++..+++.....+.++..++.++.|+++||+.+|++...... .+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~ 296 (379)
T TIGR00881 217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII 296 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 45566666667777777888899999999999999999999999999999999999999998634444332221 1111
Q ss_pred HHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhh
Q 010358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (512)
Q Consensus 148 ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (512)
++...+... +. .+...+.+..++.|+...+..+....+..|.+|++. |
T Consensus 297 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 344 (379)
T TIGR00881 297 VSLLVYWLN-------PA-------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------A 344 (379)
T ss_pred HHHHHHhcC-------cc-------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------h
Confidence 222221111 00 233444455566666555666666778899999887 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHH
Q 010358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 262 (512)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f 262 (512)
++++++++...++|+.++|.+.|++.++.||++.|
T Consensus 345 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 345 GTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 99999999999999999999999999999998754
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.2e-10 Score=111.32 Aligned_cols=162 Identities=10% Similarity=-0.003 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHh--cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~--l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ 147 (512)
..++..+..++...+--++..+++.|+.+. +|++..+++...+.+.++..++.+++++++||+ |+++++.++..+.+
T Consensus 141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~~ 219 (310)
T TIGR01272 141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLAV 219 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence 444444444444444556778899999864 799999999999999999999999999999998 99999888887777
Q ss_pred HHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhh
Q 010358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (512)
Q Consensus 148 ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (512)
++.+++... .+.. ...+.++.|++.+...|...+...+.+|++. + +
T Consensus 220 ~~~~l~~~~----------------------------~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-~----~ 265 (310)
T TIGR01272 220 LLSIGAALT----------------------------HGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-S----Q 265 (310)
T ss_pred HHHHHHHHc----------------------------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-h----h
Confidence 766444432 1111 2235567899999999999999988888643 1 3
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHH
Q 010358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (512)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~ 269 (512)
+++ +. ....+|+.+.|.+.|++.|..|.+.+|++..++.
T Consensus 266 asa--i~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~ 304 (310)
T TIGR01272 266 GSG--IL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCY 304 (310)
T ss_pred hHH--HH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 443 33 4567899999999999999999988888655443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-09 Score=108.68 Aligned_cols=140 Identities=16% Similarity=0.164 Sum_probs=105.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCC
Q 010358 102 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP 181 (512)
Q Consensus 102 ~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~ 181 (512)
+++...+.+..+..++..+++++.||++|++ |||+++...++++++++++++++. |.+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~---------------------~~~ 138 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSV---------------------GTT 138 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCC---------------------CCC
Confidence 6667778888889999999999999999997 999999999999999988666641 222
Q ss_pred cchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHH----HHHHHHHHHHHhHHHHhhhhc--
Q 010358 182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF----YLSVTVGAIVAFTLVVYIQME-- 255 (512)
Q Consensus 182 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~----~~~~~lg~~l~p~i~~~l~~~-- 255 (512)
+...-+.++...|+++|+|.|+-+|+..+..+|....+. |+...++. .++...|++++.++.+.....
T Consensus 139 ~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~ 212 (538)
T KOG0252|consen 139 SPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFN 212 (538)
T ss_pred CCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCC
Confidence 222456788899999999999999999999999888776 77776663 334444555555544433221
Q ss_pred ---------cchHHHHHHHHHHH
Q 010358 256 ---------HGWGSAFGALAIAM 269 (512)
Q Consensus 256 ---------~gw~~~f~i~~~~~ 269 (512)
.=||..|.+.++..
T Consensus 213 ~~~~~~~ld~vWRl~~glg~vpa 235 (538)
T KOG0252|consen 213 GPSTYPHLDGVWRIIFGLGAVPA 235 (538)
T ss_pred CCCCchHHHHHHHHHHHHHHHHH
Confidence 12998887666543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-09 Score=110.68 Aligned_cols=179 Identities=16% Similarity=0.078 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
.++......++...+.|...+|+.+|+++..|++....+++...|.++..++.+++|+++|| +.++++.....+..+.
T Consensus 212 ~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~ 289 (394)
T COG2814 212 GVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALA 289 (394)
T ss_pred hHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHH
Confidence 57778888888889999999999999999999999999999999999999999999999998 7888888877777766
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
+..+.+.. .+.....+..++.|+..+........-.++.. ++. ++.
T Consensus 290 ~l~l~~~~---------------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~------~~~ 335 (394)
T COG2814 290 LLALTFTG---------------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDA------ADL 335 (394)
T ss_pred HHHHHHhc---------------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCc------hHH
Confidence 66665541 24445555566666666655555555556633 344 788
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhccccc
Q 010358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~ 284 (512)
+.+++..+.|+|..+|..++|.+.+++|+....++.+++.++++++.+...+.++
T Consensus 336 a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~~ 390 (394)
T COG2814 336 AGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKDR 390 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8889999999999999999999999999999999999998888887766544433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-08 Score=106.94 Aligned_cols=179 Identities=11% Similarity=0.061 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchHHHHH-HHHHHHHHHHH
Q 010358 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIA-IFTTIYLAGLT 151 (512)
Q Consensus 76 ~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~---~GR~~~i~-~~~~l~~ig~~ 151 (512)
+..+...+.+..+..++..|+++.+|++...++.+..+.-+.-++.-|+.|.++||. +||||..+ ++.+.+.++.+
T Consensus 16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ 95 (460)
T PRK11462 16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV 95 (460)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence 344455566666778899999999999999999999999999999999999999973 48876554 56666776666
Q ss_pred HHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHH
Q 010358 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (512)
Q Consensus 152 ~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (512)
++... |...+ ......+++.-.+..++......+..++.+++.++.+ | |.+..
T Consensus 96 llf~~---p~~s~-------------------~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~--e---Rt~l~ 148 (460)
T PRK11462 96 LAYST---PDLSM-------------------NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT--Q---RISLQ 148 (460)
T ss_pred HHHhC---CCCCc-------------------chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH--H---HHHHH
Confidence 55543 11111 0223445555556677888888888899999987543 2 88999
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhc-------cchHHHHHHHHHHHHHHHHHHHhhcc
Q 010358 232 NFFYLSVTVGAIVAFTLVVYIQME-------HGWGSAFGALAIAMGISNMLFFIGTP 281 (512)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~l~~~-------~gw~~~f~i~~~~~~i~~i~~~~~~~ 281 (512)
++...+.++|+.+++.+...+... .||+....+.+++.++...+.+...+
T Consensus 149 s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~k 205 (460)
T PRK11462 149 SWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTK 205 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcce
Confidence 998888888887777665544332 35676665555555444444444333
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-08 Score=105.59 Aligned_cols=116 Identities=11% Similarity=0.031 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 010358 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (512)
Q Consensus 74 i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l 153 (512)
+....++..+.+-...++++.|+.+ .|++..+.+.+.+...+...+.+++.|+++||+..++|.+.+..++..+.....
T Consensus 7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~ 85 (400)
T PF03825_consen 7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555566889999986 579999999999999999999999999999998456777766665544443333
Q ss_pred hhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCC
Q 010358 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (512)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~ 218 (512)
... .+...+++..++..+......|...++.-+...+
T Consensus 86 ~~~----------------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~ 122 (400)
T PF03825_consen 86 AFS----------------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD 122 (400)
T ss_pred HHh----------------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc
Confidence 332 3455566666667777777777777777666553
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.7e-10 Score=106.31 Aligned_cols=172 Identities=18% Similarity=0.110 Sum_probs=133.1
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 010358 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (512)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~ 140 (512)
...+......+|.+..+.++...+.+-+.+..+.+.++.+|+|...++.+.+...+......++.|.++||+ ||+-..+
T Consensus 256 Ltdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv 334 (459)
T KOG4686|consen 256 LTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWV 334 (459)
T ss_pred cccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhH
Confidence 344444455788888888888888877888889999999999999999999999999999999999999998 9987766
Q ss_pred HHHHH-HHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCC
Q 010358 141 IFTTI-YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (512)
Q Consensus 141 ~~~~l-~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~ 219 (512)
.+..+ .+++...++++. ..-+++..++|+.....-....+.++-..|++
T Consensus 335 ~~a~~~tl~~H~~l~Ft~------------------------------lsPy~~m~~lGLsysllAcslWP~va~~vpE~ 384 (459)
T KOG4686|consen 335 ASACILTLLGHSGLFFTF------------------------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEE 384 (459)
T ss_pred HHHHHHHHHHhhhHHhhh------------------------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH
Confidence 65554 444666666542 12345666777777665555677777888887
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccc---hHHHHHHHHHHH
Q 010358 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAM 269 (512)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~g---w~~~f~i~~~~~ 269 (512)
. .+++++..+...|+|-.+.|+++|.|.++-| |--.|.+....+
T Consensus 385 q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~ 431 (459)
T KOG4686|consen 385 Q------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLM 431 (459)
T ss_pred H------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHH
Confidence 7 9999999999999999999999999998766 444455444443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.7e-10 Score=117.68 Aligned_cols=164 Identities=8% Similarity=-0.074 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHH-HHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYL 147 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~-~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~-i~~~~~l~~ 147 (512)
.++...+..++....++++.+++|.|+++ ..+++..+++.......++..++.+++|+++||+ |||+. +.+..++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~ 321 (412)
T TIGR02332 243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAA 321 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHH
Confidence 46667777778888888999999999987 3577888888888999999999999999999997 87664 333333333
Q ss_pred HHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhh
Q 010358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (512)
Q Consensus 148 ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (512)
++. ++.... .+....+++..+.++|.....+.......|.+|++. |
T Consensus 322 ~~~-~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~ 367 (412)
T TIGR02332 322 AGW-LLASAT---------------------------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------R 367 (412)
T ss_pred HHH-HHHHhc---------------------------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------H
Confidence 332 111110 111111222223333333333334444466778766 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHhhhhccc-hHHHHHHHHHH
Q 010358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIA 268 (512)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~l~~~~g-w~~~f~i~~~~ 268 (512)
+.++++.+...++|+.++|.+.+.+.+..| |+++|++.+++
T Consensus 368 ~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 368 AIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 999999999999999999999999999875 99998876654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-09 Score=110.13 Aligned_cols=174 Identities=12% Similarity=-0.024 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH-
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL- 147 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~- 147 (512)
+..+...+..+...+++-...++.+.+|+++.|++.++.|.+.++..+...+.+++.|.++||+ |.||-+++...+..
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence 3566666666666677666778999999999999999999999999999999999999999998 96554443332222
Q ss_pred -HHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHH----HHHhhcChhhhhhhHhhccCCCCChh
Q 010358 148 -AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYI----TGFGAAGIRPCVSSFGADQFDERSKD 222 (512)
Q Consensus 148 -ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l----~g~g~g~~~~~~~~~~ad~f~~~~~~ 222 (512)
.+-...... .|.+. .| ++++..+ +++...+..|..-++..+. ++
T Consensus 86 l~~pff~~v~--~pll~---------------------~n---~~lg~iig~i~l~~~f~~~~~~~Ea~~er~-----sr 134 (412)
T PF01306_consen 86 LFGPFFIYVF--GPLLQ---------------------SN---FWLGAIIGGIYLGLVFNAGVPLSEAYAERV-----SR 134 (412)
T ss_dssp TCHHHHHHTH--HHHHH---------------------TT----HHHHHHTTTTTTTTTTTHHHHHHHHHHHH-----HH
T ss_pred HHHHHHHHHH--HHHHH---------------------HH---HHHHHHHHHHHHHHHHcccchHHHHHHHHH-----HH
Confidence 232222111 01110 11 1222222 2233333334443333221 11
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 223 ~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
..+-=++--.....+|.+++..++|++.+ .+-...||+..+..++..++.++
T Consensus 135 ---~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~ 186 (412)
T PF01306_consen 135 ---RNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLL 186 (412)
T ss_dssp ---HHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ---HhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHH
Confidence 12222333455667899999999998876 45567788766555444444333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.3e-09 Score=109.61 Aligned_cols=149 Identities=11% Similarity=0.040 Sum_probs=122.4
Q ss_pred hHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCccccccccc
Q 010358 97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176 (512)
Q Consensus 97 ~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~ 176 (512)
.+++|+...+-+.+.++|.+++.++.+++|.|.||+ .-.+.+....+++.+..++....
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~-------------------- 131 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV-------------------- 131 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 457788888899999999999999999999999998 85555555555444433333222
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhh---
Q 010358 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--- 253 (512)
Q Consensus 177 ~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~--- 253 (512)
.+.+.+++.|++.|+.+++..|+...+++.+|.+++ |+.-+++++.+..+|+++|.+++..+.
T Consensus 132 --------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~ 197 (495)
T KOG2533|consen 132 --------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLN 197 (495)
T ss_pred --------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhc
Confidence 578899999999999999999999999999999988 999999999999999999999998863
Q ss_pred ---hccchHHHHHHHHHHHHHHHHHHHhhc
Q 010358 254 ---MEHGWGSAFGALAIAMGISNMLFFIGT 280 (512)
Q Consensus 254 ---~~~gw~~~f~i~~~~~~i~~i~~~~~~ 280 (512)
...||||.|.+.+++.++..++.++..
T Consensus 198 ~~~~~~gW~~~FiI~G~i~~~~gi~~f~~l 227 (495)
T KOG2533|consen 198 GSGGLAGWRWLFIIEGVITLVLGIVVFFFL 227 (495)
T ss_pred CCCCcCCceeehhHHHHHHHHHHheEEEEe
Confidence 357899999999988766655554433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-09 Score=112.73 Aligned_cols=148 Identities=16% Similarity=0.044 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhccccc
Q 010358 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (512)
Q Consensus 83 ~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l 162 (512)
...+.+..+++.|+.+ .|.+..+.+...+...++..++.+++|+++||+ |||+++..+.++..++.+++...
T Consensus 245 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~------ 316 (426)
T PRK12307 245 GANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRI------ 316 (426)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHH------
Confidence 3444566788888876 599988888888888889999999999999998 99999888887766554444322
Q ss_pred CCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 010358 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (512)
Q Consensus 163 ~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~ 242 (512)
+. .....+.+..+..+++..+..+..+.++.|.+|++. |++++++.+...++|+
T Consensus 317 -~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~ 370 (426)
T PRK12307 317 -PQ-------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSG 370 (426)
T ss_pred -cc-------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHH
Confidence 00 111112122222223333445566778899999877 9999999999999999
Q ss_pred HHHhHHHHhhhhccchHHHHHH
Q 010358 243 IVAFTLVVYIQMEHGWGSAFGA 264 (512)
Q Consensus 243 ~l~p~i~~~l~~~~gw~~~f~i 264 (512)
.++|.+.+++.+..|+....++
T Consensus 371 ~~gp~~~g~l~~~~g~~~~~~~ 392 (426)
T PRK12307 371 TFNSMAATWLGITMGLGAALTF 392 (426)
T ss_pred HHHHHHHHHHHHcccHHHHHHH
Confidence 9999999999999887654443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.6e-10 Score=112.15 Aligned_cols=182 Identities=13% Similarity=-0.011 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~i 148 (512)
+..|.+.+..+.+.-+|-++..+++.|++++++.++.+++.....+.....+..++||+||||+ |.+|+..+...++++
T Consensus 218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~ 296 (417)
T COG2223 218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMAL 296 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHH
Confidence 3678888888888888889999999999999999999999999999999999999999999998 888888888887777
Q ss_pred HHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhh
Q 010358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (512)
Q Consensus 149 g~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (512)
+..++.+... ...+ ..+...++...+.+++..|.-+.....++...|+++ -+
T Consensus 297 ~~~~l~~~~~---~~~~------------------~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G 348 (417)
T COG2223 297 AAALLSLFLT---GFGH------------------GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TG 348 (417)
T ss_pred HHHHHHcccc---cccc------------------CcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hh
Confidence 7777666411 0000 023333444344444555555555666676777653 57
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhccc-hHHHHHHHHHHHHHHHHHHHhh
Q 010358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 279 (512)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~i~~~~~ 279 (512)
...++.....++|+..-|...+...+.+| +..+|++...+.++++++....
T Consensus 349 ~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 349 AVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred HHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888899999999999999999888 9999998888877776655443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-09 Score=117.28 Aligned_cols=174 Identities=11% Similarity=0.037 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHH-----HHHHHHHHH
Q 010358 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-----TIAIFTTIY 146 (512)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~-----~i~~~~~l~ 146 (512)
|.+.+..++.....+++..+++.|+.+++|++..+++...+.+.++..++.+++|+++||+ |||+ .........
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~~ 333 (476)
T PLN00028 255 WILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQT 333 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHHH
Confidence 4444444444455556677889999999999999999999999999999999999999997 8762 222211111
Q ss_pred HHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 147 ~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
+.+...+.+... .+.....+..++.+++.++..+...+...+..| +.
T Consensus 334 l~~i~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------ 380 (476)
T PLN00028 334 LGGVFCIWLGRA--------------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------ 380 (476)
T ss_pred HHHHHHHHhccc--------------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------
Confidence 112211211100 223334444455555554444445555555543 34
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhc
Q 010358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (512)
Q Consensus 227 r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~ 280 (512)
++...++.+.+.++|+.++|.+.+ ..+..+|+.+|++.+++.+++.++.++.+
T Consensus 381 ~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 381 LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 888888887777788887776654 23345699999998888877777766654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.9e-09 Score=108.85 Aligned_cols=168 Identities=11% Similarity=-0.103 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 010358 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (512)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~ 151 (512)
+......++..+..+......+.|+.+++|++..+.+.......++..++.++.|+++||+ |||+.+.++.++..++..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~~ 296 (406)
T PRK15402 218 VAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGLL 296 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHH
Confidence 3333333444444555556678888889999999888877777778888999999999998 999999998888777777
Q ss_pred HHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHH
Q 010358 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (512)
Q Consensus 152 ~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (512)
++.+.... .+ .+...++++.++.++|.+...+......... ++++ +++..
T Consensus 297 ~~~~~~~~---~~--------------------~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~ 346 (406)
T PRK15402 297 LAALATVI---SS--------------------HAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVS 346 (406)
T ss_pred HHHHHHHc---cc--------------------ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHH
Confidence 76654110 00 2445567778888888887776665555433 3344 89999
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHH
Q 010358 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (512)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~ 270 (512)
+.+++...+|..+|+.+.+++.+..++....+..++..+
T Consensus 347 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~ 385 (406)
T PRK15402 347 AAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGL 385 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHH
Confidence 999999999999999999999888887655444443333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-09 Score=113.23 Aligned_cols=179 Identities=17% Similarity=0.079 Sum_probs=122.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHH-------
Q 010358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI------- 139 (512)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i------- 139 (512)
+++.++.+.+..++..+.++.+..++|.|+.+.+|++..+++.......++..++.+++|+++||+ ++|+..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~ 337 (465)
T TIGR00894 259 KSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARK 337 (465)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHH
Confidence 345678888888999999999999999999999999999999999998999999999999999997 544211
Q ss_pred -HHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCC
Q 010358 140 -AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (512)
Q Consensus 140 -~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~ 218 (512)
..+......+..++..... . .+....++...+.+.+.++..+.......|..|.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 392 (465)
T TIGR00894 338 IFNGIGGLGPGIFAYALPYL-----S--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR 392 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHc-----C--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh
Confidence 1111111111111111100 0 1222233334444444444445444445565553
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhcc---chHHHHHHHHHHHHHHHHHHHh
Q 010358 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---GWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~---gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
. ++...++.+...++|+.++|.+.+++.+.. +|...|.+.++..+++.++...
T Consensus 393 -~------~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 393 -F------LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred -H------HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 3 899999999999999999999999987653 4888888887777766655443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-09 Score=109.80 Aligned_cols=153 Identities=9% Similarity=0.005 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 71 ALFIFGNEMAERMAYFGLS-VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~-~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
++......++..+.++++. ...+.|+++.+|.+..+.+.+.....++..++.++.|+++||+ ||++.+..+..+..++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 290 (365)
T TIGR00900 212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGLA 290 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence 3444444555555555555 6677888777999999999999999999999999999999997 9999988877666666
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
..++.... .+...+++..++.|++.+...+...+++.|.+|+++ |++
T Consensus 291 ~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 337 (365)
T TIGR00900 291 ILVVGLTP---------------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGR 337 (365)
T ss_pred HHHHHhhc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHH
Confidence 55554430 125566777888999999999999999999999877 999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhccc
Q 010358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~l~~~~g 257 (512)
.+++++...++|..++|.++|++.++.|
T Consensus 338 ~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 338 VFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999988654
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.5e-09 Score=107.75 Aligned_cols=166 Identities=7% Similarity=-0.101 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
.++...+..++....+.....+++.|+. +.|.+..+.+...+....+..+..++.|++.||+ |+++.+.++.++..++
T Consensus 206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~ 283 (382)
T PRK11128 206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVR 283 (382)
T ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
Confidence 3444444455555556566677888985 5899998889888888888888889999999998 9999999888887777
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
.+++... .+.+.+++..++.|++.+...+....+..++ ++++ +++
T Consensus 284 ~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~ 328 (382)
T PRK11128 284 WGLMGST----------------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIR 328 (382)
T ss_pred HHHHHhh----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHH
Confidence 6665543 4566677788888998888888888777775 4433 667
Q ss_pred HHHHHH-HHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHH
Q 010358 230 FFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (512)
Q Consensus 230 ~~~~~~-~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~ 273 (512)
..+++. ....+|..+||.++|++.+.+|+. .|++.+++.++++
T Consensus 329 ~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~ 372 (382)
T PRK11128 329 LQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHH
Confidence 777765 556778899999999999999874 5555554444443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.5e-09 Score=108.27 Aligned_cols=169 Identities=11% Similarity=-0.002 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 010358 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (512)
Q Consensus 73 ~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~ 152 (512)
......++.....+....+++.|+.+.+|++..+++...+...++..++.++.|+++||+ |+++.+.++..+..++.++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~~ 281 (382)
T PRK10091 203 LIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALLM 281 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHHH
Confidence 333333444444545566778899888999999999999999999999999999999997 9999998888877777655
Q ss_pred HhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhcc-CCCCChhhhhhhhhHH
Q 010358 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ-FDERSKDYKTHLDRFF 231 (512)
Q Consensus 153 l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~-f~~~~~~~~~~r~~~~ 231 (512)
+.... .+.....+..++.++|.++..+.......+. .+++. ++..
T Consensus 282 ~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~- 327 (382)
T PRK10091 282 LFFFG---------------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA- 327 (382)
T ss_pred HHHHH---------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH-
Confidence 44320 1223334444455555544444434333333 33322 3333
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhc-cchHHHHHHHHHHHHHHHHHHH
Q 010358 232 NFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLFF 277 (512)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~l~~~-~gw~~~f~i~~~~~~i~~i~~~ 277 (512)
..+....+|..+||.++|++.+. .+|++.+.+.++..++......
T Consensus 328 -~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 328 -GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred -HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence 33566789999999999999885 6799999887766655444433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.5e-09 Score=111.99 Aligned_cols=156 Identities=10% Similarity=-0.026 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 010358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (512)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~ 150 (512)
+...+...++..+++.......+.|++..+|.+..+++........+..++.++.|+++||+ |||+++.++..+..++.
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~ 341 (471)
T PRK10504 263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALVS 341 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence 34455555666666655555677788878999999999888888888888889999999998 99999998888777765
Q ss_pred HHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhH
Q 010358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (512)
Q Consensus 151 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~ 230 (512)
.++..... . .+...+.+..++.|++.+...+....+..+.+|++. ++..
T Consensus 342 ~~~~~~~~------~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 390 (471)
T PRK10504 342 LLFMLVAL------L-------------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSG 390 (471)
T ss_pred HHHHhccc------c-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccch
Confidence 55544310 0 223334455667778888888888889999999877 8999
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhccch
Q 010358 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (512)
Q Consensus 231 ~~~~~~~~~lg~~l~p~i~~~l~~~~gw 258 (512)
++++++...+|..+|+.+++.+.+..|+
T Consensus 391 ~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 391 NSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999988776665
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.7e-09 Score=110.00 Aligned_cols=167 Identities=12% Similarity=0.073 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhc---CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 010358 76 GNEMAERMAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (512)
Q Consensus 76 ~~~~~~~~~~~~v~~~l~~yl~~~l---~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~ 152 (512)
...++....+.......+.|+.+.+ +.+....+...+...+...++.++.|++.||+ |||+.+.++.++..++..+
T Consensus 222 l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l~~~~ 300 (396)
T TIGR00882 222 LYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSVRIIG 300 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHH
Confidence 3334444444445556788887766 44555667777777777888889999999998 9999999988888877666
Q ss_pred HhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHH
Q 010358 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (512)
Q Consensus 153 l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~ 232 (512)
.... .+...+++..++.+++..........+..+.++++. +++..+
T Consensus 301 ~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~~ 346 (396)
T TIGR00882 301 SSFA----------------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIYL 346 (396)
T ss_pred HHhc----------------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEeeh
Confidence 5543 345556667777887766655556666777777665 666666
Q ss_pred H-HHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Q 010358 233 F-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (512)
Q Consensus 233 ~-~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~ 277 (512)
. ++....+|+++++.++|++.+..||+..|.+.+++.++..++..
T Consensus 347 ~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 347 IGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 6 67889999999999999999999999999988887766655543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.5e-09 Score=106.75 Aligned_cols=172 Identities=6% Similarity=-0.097 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHH-HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 010358 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (512)
Q Consensus 73 ~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~-~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~ 151 (512)
......++...+......+.+.|+.+ .|++..+.+.+..... ....++.+++|+++||+ |+++++.++..+..+...
T Consensus 212 ~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~ 289 (390)
T TIGR02718 212 SLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSLAL 289 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHH
Confidence 33334455555555666777888876 7999999998887765 45667788999999998 999998887765533322
Q ss_pred HHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCC-CChhhhhhhhhH
Q 010358 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRF 230 (512)
Q Consensus 152 ~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~-~~~~~~~~r~~~ 230 (512)
....... .... .+...++....+.+++.+...+...+...+..++ +. +++.
T Consensus 290 ~~~~~~~-~~~~---------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~ 341 (390)
T TIGR02718 290 LWFAQAA-FWLA---------------------PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTD 341 (390)
T ss_pred HHHHHHH-cccC---------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHH
Confidence 2221100 0000 1222333333444555666667777777777665 45 8999
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHH
Q 010358 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (512)
Q Consensus 231 ~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i 274 (512)
+++++...++|..++|.++|++.+..||+..|.+.+++.+++++
T Consensus 342 ~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 342 VTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887766555443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.4e-09 Score=109.97 Aligned_cols=156 Identities=9% Similarity=-0.054 Sum_probs=109.6
Q ss_pred HHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCccccc
Q 010358 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172 (512)
Q Consensus 93 ~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~ 172 (512)
..++.+.+|.+...+........+...++.+++|+++||+ |||++++++.++..++.++++..... +.
T Consensus 294 ~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~----~~------- 361 (479)
T PRK10077 294 APEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYT----QA------- 361 (479)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhc----Cc-------
Confidence 3444456888877777776677778889999999999998 99999999999888887777653110 00
Q ss_pred ccccCCCCCcchhhHHHHHHHHHHHHHhhcC-hhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHH-
Q 010358 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAG-IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV- 250 (512)
Q Consensus 173 ~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~-~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~- 250 (512)
.. .....+..+.+++.+. ..++...+++|.+|++. |+.++++.+...++|.++++.+.+
T Consensus 362 ------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~ 422 (479)
T PRK10077 362 ------------PG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPM 422 (479)
T ss_pred ------------cc-HHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 11 1223334444444443 34677899999999877 999999988888888877754444
Q ss_pred -----hhhhccchHHHHHHHHHHHHHHHHHHHhh
Q 010358 251 -----YIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (512)
Q Consensus 251 -----~l~~~~gw~~~f~i~~~~~~i~~i~~~~~ 279 (512)
++.+..+|++.|++.++..++++++.+..
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
T PRK10077 423 MDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF 456 (479)
T ss_pred HHhccchhhhccCccHHHHHHHHHHHHHHHHHhc
Confidence 55567889888888776666555554443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.7e-09 Score=112.70 Aligned_cols=155 Identities=13% Similarity=0.098 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 010358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (512)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~ 150 (512)
++...+..++..+.+++...+++.|+++.+|++..+++.......++..++.++.|+++||+ |||+.+.++..+..++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~~ 335 (485)
T TIGR00711 257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVGF 335 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHH
Confidence 34445556667777788888899999999999999999999989999999999999999998 99999999888888777
Q ss_pred HHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhH
Q 010358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (512)
Q Consensus 151 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~ 230 (512)
.++..... +. .+...++...++.|+|.+...+.......+.+|+++ ++++
T Consensus 336 ~~~~~~~~-----~~-------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~ 385 (485)
T TIGR00711 336 YWRAFTFT-----PD-------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARG 385 (485)
T ss_pred HHHhccCC-----CC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHH
Confidence 76653210 11 234455566778899998888777777778888776 9999
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhcc
Q 010358 231 FNFFYLSVTVGAIVAFTLVVYIQMEH 256 (512)
Q Consensus 231 ~~~~~~~~~lg~~l~p~i~~~l~~~~ 256 (512)
.++++...++|+.+|+.+.+.+.++.
T Consensus 386 ~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 386 SSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.9e-09 Score=109.18 Aligned_cols=161 Identities=16% Similarity=0.055 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
.++.+++..++..++++......+.|++..++ +....+.......++..++.++.++++||+ |||+++.++.++..++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~ 300 (437)
T TIGR00792 223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLG 300 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 44555566666666666555555566655566 455666667777888889999999999998 9999999998888877
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhh-hhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD 228 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~-~~~r~ 228 (512)
.+++.+.. .+...+++..++.+++.+...+...++++|..|.++.+. .+.++
T Consensus 301 ~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 353 (437)
T TIGR00792 301 YLIFFFAG---------------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEG 353 (437)
T ss_pred HHHHHHcc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchH
Confidence 76665430 234455666677889998888999999999877432111 12268
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhccchH
Q 010358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWG 259 (512)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~ 259 (512)
.+++++++...+|..+++.+.|++.+..||.
T Consensus 354 ~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 354 LVYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999998877763
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.06 E-value=5e-09 Score=107.96 Aligned_cols=149 Identities=14% Similarity=0.024 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 010358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (512)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ 147 (512)
++..+.+.+..++..+.++.+..+++ |+.+++|.+..+++.......++..++.+++|+++||+ |||+.+....+..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 326 (398)
T TIGR00895 249 ARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAV 326 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHH
Confidence 34445555555666677777777777 77778999999999999999999999999999999998 99855444333333
Q ss_pred HHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhh
Q 010358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (512)
Q Consensus 148 ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (512)
+..++.... .+...+++..++.|++.++..+...++.+|.+|++. |
T Consensus 327 ~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 372 (398)
T TIGR00895 327 FAVLVGSTL----------------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------R 372 (398)
T ss_pred HHHHHHHHh----------------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------H
Confidence 222222211 234456667778899999889999999999999877 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHhh
Q 010358 228 DRFFNFFYLSVTVGAIVAFTLVVYI 252 (512)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~l 252 (512)
++++++++....+|..++|.++|++
T Consensus 373 g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 373 ATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999999999876
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.4e-07 Score=95.94 Aligned_cols=140 Identities=15% Similarity=0.086 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHH-HHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhh
Q 010358 108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTI-AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ 186 (512)
Q Consensus 108 ~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i-~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~ 186 (512)
+...++..+..++..|+.|-++|+- |+||.+ .++..+..+...++.+.. | .+
T Consensus 73 ~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~------~--------------------~~ 125 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVS------P--------------------GQ 125 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhC------c--------------------ch
Confidence 4556777788888889999999986 765554 445555555555555531 1 23
Q ss_pred HHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhh--------------------hhhhhHHHHHHHHHHHHHHHHh
Q 010358 187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK--------------------THLDRFFNFFYLSVTVGAIVAF 246 (512)
Q Consensus 187 ~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~--------------------~~r~~~~~~~~~~~~lg~~l~p 246 (512)
.....+..++..++.+.......+++.|..++++...+ ..|++..++-+...++|+++..
T Consensus 126 ~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l 205 (477)
T PF11700_consen 126 WWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVAL 205 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 32222233334467777788889999999887763000 0016666666666777877776
Q ss_pred HHHHhhhh--------ccchHHHHHHHHHHHHHHHH
Q 010358 247 TLVVYIQM--------EHGWGSAFGALAIAMGISNM 274 (512)
Q Consensus 247 ~i~~~l~~--------~~gw~~~f~i~~~~~~i~~i 274 (512)
.+.-.+.. ..+.|+.+.+.++..++..+
T Consensus 206 ~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsi 241 (477)
T PF11700_consen 206 LISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSI 241 (477)
T ss_pred HHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHH
Confidence 66544322 12357777776666544333
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.1e-09 Score=112.75 Aligned_cols=173 Identities=16% Similarity=0.094 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHH------------HHHHHHHHHHHHHHHHHHHHhhccchHHH
Q 010358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN------------AVNNFLGISQASSVLGGFLADAYLGRYWT 138 (512)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~------------~~~~~~~~~~l~~l~~G~LsD~~~GR~~~ 138 (512)
.+.+....++..+.+|++..++|.+++ ..|++..+++. .......+..++.+++++++||+ |||++
T Consensus 290 ~~~~~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~ 367 (502)
T TIGR00887 290 LLGTAGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPI 367 (502)
T ss_pred HHHHHHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhH
Confidence 333334445566788888888888885 57876543221 12223344556778899999998 99999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCC
Q 010358 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (512)
Q Consensus 139 i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~ 218 (512)
++++.++..++..++.+.... .+ .+ ..+....+...++..+..+....+.+|.+|+
T Consensus 368 l~~~~~~~~~~~~~l~~~~~~---~~--------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~ 423 (502)
T TIGR00887 368 QLMGFFILTVLFFVLGFAYNH---LS--------------------TH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPT 423 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---cc--------------------hh-HHHHHHHHHHHHHhcCCCchhhhhhhccCch
Confidence 988887777666555543110 00 11 1111111112222233445666778999999
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhc----------cchHHHHHHHHHHHHHHHHH
Q 010358 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNML 275 (512)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~----------~gw~~~f~i~~~~~~i~~i~ 275 (512)
+. |++++++.+....+|++++|.+.+++.+. .++...|++.++..+++.+.
T Consensus 424 ~~------R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 424 RY------RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred hH------HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 88 99999999999999999999999998874 34455666666655555443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-08 Score=107.01 Aligned_cols=184 Identities=14% Similarity=0.021 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
.+|.+.+..++..-+|.++..++|.|+++.+. ...+.....+..+...+..+++|+||||+ |+++++.++.++..++
T Consensus 253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~ 329 (462)
T PRK15034 253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIF 329 (462)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHH
Confidence 46777777777777777787789999988663 33333334445677888999999999998 9999999988877776
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCC---------
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS--------- 220 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~--------- 220 (512)
..++.+.. |. ....+...+.++.+.+.++.|........++.+.||++.
T Consensus 330 ~~~~~l~l------p~----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~ 387 (462)
T PRK15034 330 SALLFLTL------PG----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGG 387 (462)
T ss_pred HHHHHHHh------cc----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhccccccc
Confidence 54433321 10 001345566666555556666667777777878777410
Q ss_pred ------hhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccc-hHHHHHHHHHHHHHHHHHHHh
Q 010358 221 ------KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 221 ------~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~i~~~~ 278 (512)
...++.-+...++......+|+.+-|.+.++..+.+| +..+|++..+..++++++-+.
T Consensus 388 ~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 388 SDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred chhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 0111236778888888889999999988887776655 888888877776666555443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.4e-09 Score=106.09 Aligned_cols=174 Identities=13% Similarity=0.090 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
.+..-+...++.+=+..++.+....|..+++|++..+..++.....+..+++.+++|+|.||+ |-|+++.++.+++.+.
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~ 331 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIA 331 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHH
Confidence 444455556666666667888889999999999999999999999999999999999999997 9999999998887765
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
.+...+. .....+++.-.++|+..|+.++..=++.++..|+++ -+.
T Consensus 332 ~~~~~~~----------------------------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~ 377 (438)
T COG2270 332 ALYLIFL----------------------------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGR 377 (438)
T ss_pred HHHHHHc----------------------------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccc
Confidence 5444433 223445566678999999999999999999999988 789
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhccc-hHHHHHHHHHHHHHHHHHHHh
Q 010358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~i~~~~ 278 (512)
+|++|.+..-.++.+||.+.+.+.+.+| -|.++....++..+++++++.
T Consensus 378 fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~ 427 (438)
T COG2270 378 FFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLR 427 (438)
T ss_pred eeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEe
Confidence 9999999999999999999999988776 677776666666666655433
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-08 Score=107.56 Aligned_cols=163 Identities=10% Similarity=0.024 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 010358 75 FGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (512)
Q Consensus 75 ~~~~~~~~~~~~~v~~~l~~yl-~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l 153 (512)
.+..++.....+++..+++.|+ ++.+|++..+++.....+.++..++.+++|+++||+ |||+++.++.++..++..+.
T Consensus 264 ~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~ 342 (438)
T PRK10133 264 VLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLIS 342 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666677888896 567899999999999999999999999999999997 99999888877666555444
Q ss_pred hhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHH
Q 010358 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (512)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~ 233 (512)
.+. .+. ..+....+.|++.+...|+..+...+.++++. +.+.++
T Consensus 343 ~~~----------------------------~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~l 386 (438)
T PRK10133 343 AFA----------------------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSSF 386 (438)
T ss_pred HHc----------------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchhH
Confidence 332 111 22455678899999999999999999987642 233333
Q ss_pred HHHHHHHHHHHHhHHHHhhhhccc-hHHHHHHHHHHHHHHHHH
Q 010358 234 FYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNML 275 (512)
Q Consensus 234 ~~~~~~lg~~l~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~i~ 275 (512)
... ..+|+.++|.+.|++.+..| -+..|++..++.++.+..
T Consensus 387 ~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 387 IVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred HhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 322 33678889999999999887 788888766665544433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.3e-08 Score=102.23 Aligned_cols=166 Identities=9% Similarity=-0.031 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-
Q 010358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG- 149 (512)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig- 149 (512)
++......++.....++...++++++.+++|++..+++.+...+.++..++.++.|++.||. +|+..+. +.++..+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~-~~~~~~~~~ 295 (394)
T PRK10213 218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAG-APLVLAVSA 295 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHH-HHHHHHHHH
Confidence 33333334444455556666665555567899999999989989899999999999999995 5544333 33333333
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
.++.... .+...+.+..++.|++.+...+...+++.+..|+ + .++
T Consensus 296 ~~l~~~~----------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~ 340 (394)
T PRK10213 296 LVLTLWG----------------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEK 340 (394)
T ss_pred HHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHH
Confidence 2222222 2345566677888999988888888888888773 3 445
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHH
Q 010358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~ 273 (512)
..++++...++|..+||.++|++.+..|++..+..++++.++..
T Consensus 341 ~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 341 AGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence 55666777789999999999999999999888887766554443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-08 Score=101.88 Aligned_cols=156 Identities=12% Similarity=0.062 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhh
Q 010358 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA 157 (512)
Q Consensus 78 ~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~ 157 (512)
..+....++....+.+.|+.+++|.++.+++.+.....++..++.+++|+++||+ |||+.+.++..+..++.+++....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 293 (385)
T TIGR00710 215 YGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAVLLEITA 293 (385)
T ss_pred HHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556667778899989999999999999889999999999999999998 999999888877777766665431
Q ss_pred cccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHH
Q 010358 158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 237 (512)
Q Consensus 158 ~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~ 237 (512)
.. +. .....+++...+.|++.+...+.......|.+| ++ +++..++++..
T Consensus 294 ~~----~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~ 343 (385)
T TIGR00710 294 IL----GL-------------------GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASALFGTL 343 (385)
T ss_pred Hh----cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHHHHHH
Confidence 10 00 123344555667888888888888888888876 34 78888887776
Q ss_pred HHHHHHHHhHHHHhhhhccchHHHHHH
Q 010358 238 VTVGAIVAFTLVVYIQMEHGWGSAFGA 264 (512)
Q Consensus 238 ~~lg~~l~p~i~~~l~~~~gw~~~f~i 264 (512)
...++.+.+.+.+.+.+..+|...+..
T Consensus 344 ~~~~g~i~~~~~~~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 344 RLVLGAIVGYLVSLIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHHHHHHhccccChHHHHHHH
Confidence 665444444445566655556544443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.2e-09 Score=111.36 Aligned_cols=153 Identities=13% Similarity=0.052 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
.+....+..++..+.+++...+++.|+++.+|++..+++.....+.++..++.+++|++.||+ |||+.+..+.++..++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~ 338 (495)
T PRK14995 260 IILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALS 338 (495)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence 444555666667777778888899999999999999999999999999999999999999998 9999988888888777
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
.+++..... . .+....++..++.|+|.|...+.......+..|+++ ++.
T Consensus 339 ~~~l~~~~~------~-------------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~ 387 (495)
T PRK14995 339 FYGLAMTDF------S-------------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAA 387 (495)
T ss_pred HHHHHHhcC------C-------------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cch
Confidence 766554310 0 233445567788899999888888888888888877 899
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhh
Q 010358 230 FFNFFYLSVTVGAIVAFTLVVYIQM 254 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~l~~ 254 (512)
+.+++++..++|+.+|+.+.+.+.+
T Consensus 388 ~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 388 AGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988755
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.8e-08 Score=106.93 Aligned_cols=166 Identities=10% Similarity=0.044 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhh
Q 010358 77 NEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (512)
Q Consensus 77 ~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~ 156 (512)
..++..+....+...+|.+..+.+|.+....|.+.+.+.++..++.++.+++.+++ ++++.+..+.+++.++.+.+++.
T Consensus 226 ~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~lal~ 304 (524)
T PF05977_consen 226 RSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLLALS 304 (524)
T ss_pred HHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHHhcc
Confidence 33333444444556688999999999999999999999999999999999999997 99999888888888777777775
Q ss_pred hcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHH
Q 010358 157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236 (512)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~ 236 (512)
.+.+..+++.++.|++.........+.+-...|++. |++.++++..
T Consensus 305 ----------------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~ 350 (524)
T PF05977_consen 305 ----------------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQM 350 (524)
T ss_pred ----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHH
Confidence 466677778888898888888888888888888887 9999999999
Q ss_pred HHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Q 010358 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (512)
Q Consensus 237 ~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~ 277 (512)
....+..+|..+.|++.+.+|-+..+.++++.++++.++..
T Consensus 351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888887776665555544
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=5e-08 Score=101.85 Aligned_cols=151 Identities=15% Similarity=0.179 Sum_probs=101.8
Q ss_pred HHHHHhhHhcCCChhHHHHHHHHHH-HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcc
Q 010358 91 NMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (512)
Q Consensus 91 ~l~~yl~~~l~~s~~~a~~~~~~~~-~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~ 169 (512)
+.+.|+.+++|++..+.+.+..... ++..++.+++|+++||+ |||+.+.++.++..+..+.+...... +
T Consensus 231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~----~----- 300 (402)
T PRK11902 231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVT----P----- 300 (402)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhc----C-----
Confidence 4456777889999998988776544 46788899999999998 99998877776655544333221110 0
Q ss_pred cccccccCCCCCcchhhHHHHHHHH----HHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 010358 170 DRISQLLGSCEPAKSWQMLYLYTVL----YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (512)
Q Consensus 170 ~~~~~~~~~c~~~~~~~~~~l~~~~----~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~ 245 (512)
.+...++++. +..+++.+...+....++.+.+|.++ . +++.....+|..++
T Consensus 301 ---------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~l~~~~~ 355 (402)
T PRK11902 301 ---------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----ALLSALASVGRVYV 355 (402)
T ss_pred ---------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HHHHHHHHHHHHHH
Confidence 1223333333 34455566667777777777766433 3 44444456777766
Q ss_pred hHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 010358 246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (512)
Q Consensus 246 p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~ 276 (512)
+.++|++.+..||+..|.+.+++.++++++.
T Consensus 356 ~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 356 GPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999998887776665554
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-08 Score=119.27 Aligned_cols=161 Identities=11% Similarity=-0.010 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChh-HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 010358 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA-DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (512)
Q Consensus 73 ~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~-~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~ 151 (512)
..++..++..+..+.+..+++.|+.+.+|++.. .++++.+...++..++.+++|+++||+ ++++++.++.++..++.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~ 314 (1146)
T PRK08633 236 LAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALSLF 314 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHHHH
Confidence 333333444445556667889999999999998 889999999999999999999999997 999888888877777766
Q ss_pred HHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHH
Q 010358 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (512)
Q Consensus 152 ~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (512)
++.+. .+...++++.++.|++.++..+...+++.+..|++. |++++
T Consensus 315 ~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~ 360 (1146)
T PRK08633 315 LLPTA----------------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVL 360 (1146)
T ss_pred HHHHh----------------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhh
Confidence 66554 345566677788899999888889999999999888 99999
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhh-ccchHHHHHHHHHH
Q 010358 232 NFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIA 268 (512)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~l~~-~~gw~~~f~i~~~~ 268 (512)
+++++..++|.++++.+++.+.. .+++...|++.+++
T Consensus 361 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 361 AANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV 398 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 99999999999888877776643 23455555554443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-08 Score=102.47 Aligned_cols=153 Identities=15% Similarity=0.080 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
..+.+....++..+.++++..+++.|+++ .|.+..+++...+.+.++..++.++.|+++||+-+||+++.++.++..++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 276 (355)
T TIGR00896 198 LAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVG 276 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Confidence 34444455556667777888899999975 79999999999999999999999999999999734666777777777777
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
.+.+.... .+... ....+.|++.|...+...+...+..++++ .++.
T Consensus 277 ~~~~~~~~---------------------------~~~~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~ 322 (355)
T TIGR00896 277 LCGLLFAP---------------------------MHGLW--AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAA 322 (355)
T ss_pred HHHHHHhh---------------------------hhHHH--HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHH
Confidence 66665431 11111 13457789998888887777776655432 1677
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhccc
Q 010358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~l~~~~g 257 (512)
.+++.+...++|..++|.+.|++.|++|
T Consensus 323 ~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 323 LSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888999999999999999876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.9e-08 Score=105.05 Aligned_cols=152 Identities=11% Similarity=0.024 Sum_probs=106.1
Q ss_pred HHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCC
Q 010358 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (512)
Q Consensus 88 v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~ 167 (512)
...++|.|+++..+ ++.+.+.+.+........+....+++.|+.++.++.+..+.++..++..+++..
T Consensus 227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~----------- 294 (400)
T PRK11646 227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV----------- 294 (400)
T ss_pred HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-----------
Confidence 44567888887666 556677666665554444444445566554376677777777777776666554
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhH
Q 010358 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (512)
Q Consensus 168 ~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~ 247 (512)
.+...+.+...+.++|.+...|...+.+.+..|++. |++.+++++...++|..+||.
T Consensus 295 -----------------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~ 351 (400)
T PRK11646 295 -----------------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYI 351 (400)
T ss_pred -----------------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhccc
Confidence 334445555667778888888888999999999888 999999999999999999999
Q ss_pred HHHhhhhccc----hHHHHHHHHHHHHHHHH
Q 010358 248 LVVYIQMEHG----WGSAFGALAIAMGISNM 274 (512)
Q Consensus 248 i~~~l~~~~g----w~~~f~i~~~~~~i~~i 274 (512)
+.|++.++.+ ....+++..++.++..+
T Consensus 352 l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (400)
T PRK11646 352 GGGWLFDLGKALNQPELPWMMLGIIGLITLL 382 (400)
T ss_pred chHHHHHHHhhcCCcchHHHHHHHHHHHHHH
Confidence 9999988742 24445444444444433
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-08 Score=107.72 Aligned_cols=162 Identities=14% Similarity=0.113 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
.++...+..++...+++......+.|+++.+|.+....+........+..++.++.++++||+ |+|+++.++.++..++
T Consensus 229 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~ 307 (448)
T PRK09848 229 PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCG 307 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 345555556666666666666677788888888766555544444566777889999999998 9999999999888888
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhh-hhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD 228 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~-~~~r~ 228 (512)
.+++.+. +. .+.+.+++..++.++|.+...+...++.+|..|.++.+. .+..+
T Consensus 308 ~~~~~~~-------~~-------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G 361 (448)
T PRK09848 308 YLLFFWV-------SV-------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEG 361 (448)
T ss_pred HHHHHHc-------Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchh
Confidence 7766543 11 345556677788899999999999999999888654221 12257
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhccch
Q 010358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (512)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw 258 (512)
..++.+++...+|..+++.+.+++.+..||
T Consensus 362 ~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 362 LTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 888899999999999999999888665554
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-08 Score=105.22 Aligned_cols=169 Identities=12% Similarity=-0.019 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHh--cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 010358 74 IFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (512)
Q Consensus 74 i~~~~~~~~~~~~~v~~~l~~yl~~~--l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~ 151 (512)
..+..++..+.+.....+.+.|+... .+.+....+.+...+........++.|++.||+ |+|+.+.++.++..++..
T Consensus 211 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~~~~ 289 (395)
T PRK10054 211 FTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVIGLV 289 (395)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHHHHH
Confidence 33444444444444445666776543 344555566666666666666677889999998 999999888888877776
Q ss_pred HHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHH
Q 010358 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (512)
Q Consensus 152 ~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (512)
.+.+.. .+...+.++..+.++|.+...|...+.+.+..|++. +++++
T Consensus 290 ~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~ 336 (395)
T PRK10054 290 GFIFSG---------------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYF 336 (395)
T ss_pred HHHHcc---------------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehH
Confidence 665431 244455667778889988888888888999998776 78887
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Q 010358 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (512)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~ 277 (512)
+... ...+|..+||.++|++.|+.|....|++.+...+++.++.+
T Consensus 337 ~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 337 SAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 7654 56689999999999999999998888876665555544443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-06 Score=89.46 Aligned_cols=142 Identities=13% Similarity=0.008 Sum_probs=99.4
Q ss_pred hhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----hHHHH-HHHHHHHHHHHHHHhhhhcccccCCCCCcc
Q 010358 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYWTI-AIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (512)
Q Consensus 96 l~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~G-----R~~~i-~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~ 169 (512)
+..|++++....+..+........ ..+..|+.||+. + ||.-+ ..+..++..|..+...+...- ...
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l--~~~---- 77 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLL--AES---- 77 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHH--ccc----
Confidence 356788888777777777665544 578899999997 6 55444 456666666666555542211 000
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHH
Q 010358 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (512)
Q Consensus 170 ~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~ 249 (512)
...-+.+.........++..++|+|.+...++..++.+|..|+++ |.+..++.|...-+|.+++.++.
T Consensus 78 ------~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~ 145 (403)
T PF03209_consen 78 ------GQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVF 145 (403)
T ss_pred ------ccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHH
Confidence 000011112233344555667889999999999999999999988 99999999999999999999999
Q ss_pred Hhhhhccc
Q 010358 250 VYIQMEHG 257 (512)
Q Consensus 250 ~~l~~~~g 257 (512)
+.+.+.++
T Consensus 146 g~lL~~~s 153 (403)
T PF03209_consen 146 GRLLDPFS 153 (403)
T ss_pred HHHccccC
Confidence 98887766
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-07 Score=98.32 Aligned_cols=166 Identities=10% Similarity=-0.038 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchH---HHHHH-HHH
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY---WTIAI-FTT 144 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~---~~i~~-~~~ 144 (512)
+.++.+....++....+|++..++|.|+++ .|++.. ++........... +..++++||+ .|+ +.... ..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHHH
Confidence 346777788888999999999999999965 678764 4444444444333 4458888886 543 33222 333
Q ss_pred HHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhh
Q 010358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (512)
Q Consensus 145 l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~ 224 (512)
+..+....+... .+....++...+.+++..+..+...++.+|.+|++.
T Consensus 266 ~~a~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~---- 313 (368)
T TIGR00903 266 LIAAFFLALAFE----------------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL---- 313 (368)
T ss_pred HHHHHHHHHHHc----------------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh----
Confidence 222222222221 112223344455566666677778899999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 010358 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (512)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~ 276 (512)
|+++.++.+...++|+.++|.+.+.+.. |....|.+.++..+++.+..
T Consensus 314 --rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 314 --HGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred --cCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987773 66666776666655555443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.2e-08 Score=107.15 Aligned_cols=176 Identities=14% Similarity=0.098 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccch--HHHHHHHHHHH
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR--YWTIAIFTTIY 146 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR--~~~i~~~~~l~ 146 (512)
+.++.+.+...+..++++....+++.|.. ..+++..+++..+++..+...++.++.|+++|+. .. +.+..++.++.
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 46777888888888999888889999988 8999999999999999999999999999999996 63 33444444444
Q ss_pred HHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 147 ~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
.+..+.+++. .++..+...-.+.|+..|......+..+.|..+.++
T Consensus 376 gl~~~~~p~~----------------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------ 421 (509)
T KOG2504|consen 376 GLARLFLPFA----------------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------ 421 (509)
T ss_pred HHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------
Confidence 4444444443 456777777788999999988888889999999888
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHhhhhccc-hHHHHHHHHHHHHHHHHHHHhhc
Q 010358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT 280 (512)
Q Consensus 227 r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~i~~~~~~ 280 (512)
...++++..+...++..+||.++|++.|.+| |...|+.+++.++++...+++..
T Consensus 422 l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 422 LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 9999999999999999999999999999988 99999999988888776665543
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-07 Score=99.31 Aligned_cols=191 Identities=14% Similarity=0.082 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~i 148 (512)
+....++...++..+.-.....+..+.+...-|++..++..+.........+..+++.++-||+ |||+.++++..++.+
T Consensus 269 ~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~~ 347 (485)
T KOG0569|consen 269 RPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMAV 347 (485)
T ss_pred HHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHH
Confidence 3455555555555554433444456666667899999999999999999999999999999998 999999999999988
Q ss_pred HHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhc-ChhhhhhhHhhccCCCCChhhhhhh
Q 010358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA-GIRPCVSSFGADQFDERSKDYKTHL 227 (512)
Q Consensus 149 g~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g-~~~~~~~~~~ad~f~~~~~~~~~~r 227 (512)
..+++.....+.....+ .-....+++.++..++.+ +..|...-+.+|+||++. |
T Consensus 348 ~~~~~~~~~~l~~~~~~-------------------~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R 402 (485)
T KOG0569|consen 348 ALLLMSIALFLSNSFGS-------------------WLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------R 402 (485)
T ss_pred HHHHHHHHHHHHHHhhh-------------------HHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------h
Confidence 88777766432110000 001122344444444333 345666777899999988 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhccccccc
Q 010358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 286 (512)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~ 286 (512)
..++++-.....+...+-.+.-..+.+..|- ..|.+.++..++..+..+...|+.|.+
T Consensus 403 ~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr 460 (485)
T KOG0569|consen 403 SAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGR 460 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence 9998887776666666666666666666664 455555555555555555555655543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.2e-08 Score=105.51 Aligned_cols=130 Identities=15% Similarity=0.062 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHH
Q 010358 113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT 192 (512)
Q Consensus 113 ~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~ 192 (512)
...+....+.+++++++||+ |||+++.++.++..++.+++.+. +. .......+
T Consensus 363 ~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~-------~~-------------------~~~~~~~~ 415 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFV-------PV-------------------DLYFLRTA 415 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHc-------CC-------------------CchHHHHH
Confidence 34456667888999999997 99999999888877776665543 10 11123334
Q ss_pred HHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHH
Q 010358 193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (512)
Q Consensus 193 ~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~ 272 (512)
..++.+++.++..+....+.+|.+|++. |++++++.+....+|++++|.+.+ + +..++...+++.+++.+++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~ 487 (505)
T TIGR00898 416 LAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLA 487 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHH
Confidence 4445556666677888899999999887 999999999999999999999988 4 3455666777666665555
Q ss_pred HHHHH
Q 010358 273 NMLFF 277 (512)
Q Consensus 273 ~i~~~ 277 (512)
.++.+
T Consensus 488 ~~~~~ 492 (505)
T TIGR00898 488 GILTL 492 (505)
T ss_pred HHHHH
Confidence 44443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.5e-08 Score=115.75 Aligned_cols=184 Identities=6% Similarity=-0.169 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
.++...+..++..+.++++.++++.|+.+.+|.+...++.+.+.+.++..++.++.|+++|+. ++++.+.++.++..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~ 304 (1140)
T PRK06814 226 RIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLF 304 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHH
Confidence 344555555555666667778899999999999999999999999999999999999999987 6666555555554444
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
.+.+.+... ....+...-+. ..+-. ...+.+.++++.+++|++.+...+...+++.+.+|++. +++
T Consensus 305 ~~~l~~~~~-~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~ 370 (1140)
T PRK06814 305 GLDLAFASS-SVPAEPAQLKS------ILVFL-SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RAR 370 (1140)
T ss_pred HHHHHhccc-ccccccccccc------hhhhh-cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------cee
Confidence 433333100 00000000000 00000 00234556677888899999999999999999999988 999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhh-ccchHHHHHHHHHH
Q 010358 230 FFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIA 268 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~l~~-~~gw~~~f~i~~~~ 268 (512)
.++.+++...+|..+++.+.+.+.+ ..++...|++.+++
T Consensus 371 v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 371 VIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999999999999998874 45666666655444
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.8e-08 Score=102.91 Aligned_cols=161 Identities=14% Similarity=0.110 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
....+++..++..++........+.|.+..+|.+ ...+.......+...++.++.++++||+ |||+++..+.++..++
T Consensus 226 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~~ 303 (428)
T PF13347_consen 226 PFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAALG 303 (428)
T ss_pred hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHHH
Confidence 4556667777777777777777788888888887 4456666778888899999999999998 9999999999999998
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhh-hhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD 228 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~-~~~r~ 228 (512)
.+++.+... .+.+.+++...+.|++.+...+...++++|..+.++-+. ++..+
T Consensus 304 ~~~~~~~~~--------------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g 357 (428)
T PF13347_consen 304 FLLLFFLGP--------------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREG 357 (428)
T ss_pred HHHHHHHHh--------------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchH
Confidence 888877611 367788888899999999999999999999998654321 12357
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhccch
Q 010358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (512)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw 258 (512)
..++.+.+...++.++++.+.+.+.+..|+
T Consensus 358 ~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 358 MYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 888889999999999999999988665554
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.1e-08 Score=103.92 Aligned_cols=177 Identities=15% Similarity=0.159 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccch----HHHHHHHHH
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR----YWTIAIFTT 144 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR----~~~i~~~~~ 144 (512)
+.+|.+.+..+++.++++.+..++|.|+.+.+|++..+.+...++-.+...+..+++|.+||+...| +.+..+...
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence 4789999999999999999999999999999999999999999999999999999999999997331 112222222
Q ss_pred HHHH----HHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCC
Q 010358 145 IYLA----GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (512)
Q Consensus 145 l~~i----g~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~ 220 (512)
+... +++.+++. + |+. . ......+.++..+.|+..++..-+ ..|..| +.
T Consensus 338 i~~~~~ai~l~~l~~~-------~----~~~----------~-~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~ap-q~ 390 (466)
T KOG2532|consen 338 IAFGGPAVFLLVLAFT-------S----DEH----------R-LLAVILLTIAIGLSGFNISGFYKN----HQDIAP-QH 390 (466)
T ss_pred HHHHHHHHHHHeeeec-------C----CCc----------c-hHHHHHHHHHHHHcccchhhhHhh----hhhccc-hH
Confidence 2222 22222221 1 100 0 011122222222222222222222 122222 22
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhc---cchHHHHHHHHHHHHHHHHHHHh
Q 010358 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~---~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
-+..+++.++..++.+.++|.+.+.+..+ ..|++.|.+.+++.+++.+++.+
T Consensus 391 ------a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 391 ------AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence 68888999999999999999999998832 36999999999998888876655
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.3e-08 Score=96.81 Aligned_cols=146 Identities=12% Similarity=0.097 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--hcCC---------------C--hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFY--VMHK---------------S--FADSSNAVNNFLGISQASSVLGGFLA 129 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~--~l~~---------------s--~~~a~~~~~~~~~~~~l~~l~~G~Ls 129 (512)
+..+.+..+-|.+++.||++.-......+. ..|. . ...-..-+.+....-+-|.++.+++-
T Consensus 326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv 405 (528)
T KOG0253|consen 326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV 405 (528)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence 355667777888999999886532222211 1111 1 11112223344456677889999999
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhh
Q 010358 130 DAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVS 209 (512)
Q Consensus 130 D~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~ 209 (512)
||+ |||+++..+.+++.+.++++..+.. + + .-..+++++|+++..+ ..+.+
T Consensus 406 erl-GRKkTMal~l~~f~iflfll~~c~~-----r------------------n-~~tvllf~arafisg~----fqvaY 456 (528)
T KOG0253|consen 406 ERL-GRKKTMALSLILFGIFLFLLTTCKT-----R------------------N-AYTVLLFTARAFISGA----FQVAY 456 (528)
T ss_pred HHh-cchhHHHHHHHHHHHHHHHHHHhcC-----c------------------c-hhHHHHHHHHHHHhch----heEEE
Confidence 996 9999999999999888877766411 0 0 2234556666665444 45677
Q ss_pred hHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHH
Q 010358 210 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (512)
Q Consensus 210 ~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~ 249 (512)
.+..|.+|+.. |+.+.+.-.....+|+++.|.++
T Consensus 457 vYtPEVyPTav------RatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 457 VYTPEVYPTAV------RATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred EecCcccchhh------hhcchhhhhhHHhhhhhhhhHHH
Confidence 88899999988 99999999999999999999998
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8e-08 Score=100.54 Aligned_cols=190 Identities=13% Similarity=0.040 Sum_probs=139.4
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccch-HHHH
Q 010358 62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTI 139 (512)
Q Consensus 62 ~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~-~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR-~~~i 139 (512)
...+.+||.+++..+..++..+.++.+.+..-.|+.+ +.+-+..-.|++++....+..++.+..|+.+.|. |+ |+-+
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pl 105 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPL 105 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCH
Confidence 3445679999999999999999888777777888876 4677777889999999999999999999999997 74 6677
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCC
Q 010358 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (512)
Q Consensus 140 ~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~ 219 (512)
+.+.++.++|.++....... |. ....++.++|++.|+|.|. .+..=++++|-...+
T Consensus 106 i~s~ii~~~g~llY~~l~~~----~~-------------------~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~ 161 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYLALAYV----PN-------------------GVKYLMLVARILTGVGVGN-FAVLRAYIADASTVE 161 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhc----cc-------------------chHHHHHHHHHHcCcCccc-HHHHHHHHHhccCcc
Confidence 88888888998888333221 21 2567889999999999876 456678888877777
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhh----hhcc---------chHHHHHHHHHHHHHHHHHHHhhccc
Q 010358 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI----QMEH---------GWGSAFGALAIAMGISNMLFFIGTPL 282 (512)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l----~~~~---------gw~~~f~i~~~~~~i~~i~~~~~~~~ 282 (512)
+ |.++++....+..+|..+||++...+ .+.+ -+..+-|+.+++.++.++++.+..++
T Consensus 162 d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 162 D------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred c------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 7 88888876666666666666555433 2211 14456666666666666655554443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.8e-07 Score=95.05 Aligned_cols=159 Identities=6% Similarity=-0.061 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccC
Q 010358 84 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (512)
Q Consensus 84 ~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~ 163 (512)
....+...++.|+.+.+|.+..+++.+.....++..++.++.+++.|+. ++++++..+.. ..+....+...
T Consensus 220 ~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~------- 290 (393)
T PRK11195 220 AGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQ------- 290 (393)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHH-------
Confidence 3334455667888889999999999999999999999999999999997 98888877743 22222222222
Q ss_pred CCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 010358 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (512)
Q Consensus 164 ~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~ 243 (512)
.+.....+..++.|++.+...++..+.+.+..|+ +. ++++.++..++..++|..
T Consensus 291 ---------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~-~~----~~g~~~a~~~~~~~~~~~ 344 (393)
T PRK11195 291 ---------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHV-LV----GAGHSIAVQNFNENLAML 344 (393)
T ss_pred ---------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcc-cc----cchhHHHHHhHHHHHHHH
Confidence 3444555666788888888788788887765433 21 168899999999999999
Q ss_pred HHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 244 VAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 244 l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
++..+.+.+ +..|-++.+.+.++..++.+.+.+.
T Consensus 345 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK11195 345 LMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALL 378 (393)
T ss_pred HHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 999888855 5677676666655555555444433
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-06 Score=91.06 Aligned_cols=177 Identities=13% Similarity=0.131 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchHHH-HHHHHHHHHHHH
Q 010358 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWT-IAIFTTIYLAGL 150 (512)
Q Consensus 75 ~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~---~GR~~~-i~~~~~l~~ig~ 150 (512)
.+..+...+.+-.+..++..|.++.+|++...++.+..+.-+.-++.-|+.|.++||. +||+|- ++++.+.+.+..
T Consensus 18 g~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~ 97 (467)
T COG2211 18 GLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVA 97 (467)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHH
Confidence 3445556666667788999999999999999999999999999999999999999974 487664 455667777777
Q ss_pred HHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhH
Q 010358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (512)
Q Consensus 151 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~ 230 (512)
+++..+ |+ .+. +......++.-++.+++......+..++.+++.++.+ | |.+.
T Consensus 98 ~l~F~~-------p~--~~~-------------~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~--E---R~~l 150 (467)
T COG2211 98 VLLFIT-------PD--FSM-------------TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ--E---RASL 150 (467)
T ss_pred HHHHcC-------CC--ccc-------------CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH--H---HHHH
Confidence 777665 11 000 1344555666778889999988888999999887533 3 8899
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhh-------ccchHHHHHHHHHHHHHHHHHHHh
Q 010358 231 FNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 231 ~~~~~~~~~lg~~l~p~i~~~l~~-------~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
.+|-.+..++|..+...+.+.+.. ..||+..-++.+++..+.++..+.
T Consensus 151 ~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~ 205 (467)
T COG2211 151 TSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFF 205 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888886666555544432 235665555555544444444333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-07 Score=98.46 Aligned_cols=165 Identities=12% Similarity=-0.008 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~i 148 (512)
|.++.+++..++..+..+......+.|.+..++ +....+.+.....+...++.++.++++||+ |||+++.++.++.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 456666666777777776666655544444444 445555566666677788889999999998 999999988887776
Q ss_pred HHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhh-hhhh
Q 010358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHL 227 (512)
Q Consensus 149 g~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~-~~~r 227 (512)
+.+.+...... ++ .+...+++..++.+++.+...+...++++|..|.++-+. ++..
T Consensus 309 ~~~~~~~~~~~----~~-------------------~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~ 365 (473)
T PRK10429 309 SCGVLLLMGLA----AP-------------------HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCE 365 (473)
T ss_pred HHHHHHHHhcc----Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccch
Confidence 65554432110 11 344556666778889999889999999999987543111 1124
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHhhhhccch
Q 010358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (512)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw 258 (512)
+..++.+.+..-+|..+++.+.|++.+..|+
T Consensus 366 G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 366 SIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5678889999999999999999998776655
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.9e-07 Score=91.98 Aligned_cols=142 Identities=10% Similarity=-0.085 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhh
Q 010358 77 NEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (512)
Q Consensus 77 ~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~ 156 (512)
..++...+.+....+.+.|+.+.+|++..+++.......++..++.+++|+++||+ |||+++.++..+..+..+.+...
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~ 280 (377)
T PRK11102 202 ASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGIWLVVS 280 (377)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555566677888888999999999999999999999999999999998 99999988887654433322221
Q ss_pred hcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHH
Q 010358 157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236 (512)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~ 236 (512)
... + .+...+.++..+.+.+.+...+.......|..| +. +++..+.++.
T Consensus 281 ~~~----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~ 329 (377)
T PRK11102 281 ALL----D--------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSLAGT 329 (377)
T ss_pred HHH----h--------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHHHHH
Confidence 100 0 123333344444444445555555566667766 44 6777777544
Q ss_pred H-HHHHHHHHhHHHH
Q 010358 237 S-VTVGAIVAFTLVV 250 (512)
Q Consensus 237 ~-~~lg~~l~p~i~~ 250 (512)
. ..+|+.+++.+.+
T Consensus 330 ~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 330 LRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHh
Confidence 3 4467777776654
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.1e-07 Score=92.49 Aligned_cols=149 Identities=11% Similarity=-0.001 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccc
Q 010358 82 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 161 (512)
Q Consensus 82 ~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~ 161 (512)
...++....+++.|++ ++|++..+.+........+..++.++++++.||+ ||++.+....++..++.+.+.+....
T Consensus 216 ~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~-- 291 (401)
T PRK11043 216 SAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLL-- 291 (401)
T ss_pred HHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 3444555666777775 5799999998877777788888999999999997 99987766665555544433322110
Q ss_pred cCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHH
Q 010358 162 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 241 (512)
Q Consensus 162 l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg 241 (512)
+. .+...++++..+.+++.+...+...+...+.+|+ + ++++.++++.....+
T Consensus 292 --~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~~~~~ 343 (401)
T PRK11043 292 --SH-------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A------TGKAAALQNTLQLGL 343 (401)
T ss_pred --cc-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c------ChHHHHHHHHHHHHH
Confidence 00 2334445556677888888888888877777763 4 789999988888888
Q ss_pred HHHHhHHHHhhhhccchHHHH
Q 010358 242 AIVAFTLVVYIQMEHGWGSAF 262 (512)
Q Consensus 242 ~~l~p~i~~~l~~~~gw~~~f 262 (512)
+.+++.+.+.+.+.......+
T Consensus 344 ~~~~~~~~g~l~~~~~~~~~~ 364 (401)
T PRK11043 344 CFLASLLVSALISTPLLTTGS 364 (401)
T ss_pred HHHHHHHHHHccCCChhHHHH
Confidence 888888888887754444443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.3e-08 Score=97.21 Aligned_cols=142 Identities=19% Similarity=0.240 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhcCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 010358 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKS-FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (512)
Q Consensus 73 ~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s-~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~ 151 (512)
.++...++..+.++....+++.|+.+.+|++ ..+++.......+...++.++.|+++||+ |+++.+.+......++.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~ 288 (352)
T PF07690_consen 210 ILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGAL 288 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHH
Confidence 3444444555566678888999999999999 78899889999999999999999999997 988888877777776666
Q ss_pred HHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHH
Q 010358 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (512)
Q Consensus 152 ~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (512)
.+.+.... .+....++..++.|++.+...+...+++.|.+|+++ +++.+
T Consensus 289 ~~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~ 337 (352)
T PF07690_consen 289 GLLLLPFS-------------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAF 337 (352)
T ss_dssp HHCCSHHH-------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHH
T ss_pred HHHHHHHh-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHH
Confidence 66554210 244566667788999999999999999999999887 99999
Q ss_pred HHHHHHHHHHHHHHh
Q 010358 232 NFFYLSVTVGAIVAF 246 (512)
Q Consensus 232 ~~~~~~~~lg~~l~p 246 (512)
++++...++|+.+||
T Consensus 338 g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 338 GLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC
Confidence 999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.7e-07 Score=95.84 Aligned_cols=143 Identities=10% Similarity=0.044 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHH-HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~-~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~i 148 (512)
.++.+.+..++..++++.+.++++.|+++ +|++..+.+.+..... ....++.+++|+++||+ |||+.+.++.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 287 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence 35555556666778888888999999987 9999999988777655 56778999999999998 999998888877776
Q ss_pred HHHHHhhhhccccc--CCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 149 GLTGITLCATMKVF--MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 149 g~~~l~~~~~~~~l--~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
+..++.+....... .+. .+...+..+.++.+++.+...+...++..+.+|++.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------ 342 (356)
T TIGR00901 288 TNAGFVWLASNGHHDGITF-------------------PHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------ 342 (356)
T ss_pred HHHHHHHHHhcCccccccc-------------------chHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------
Confidence 65544432100000 000 133556666778899999999999999999999998
Q ss_pred hhhHHHHHHHHHH
Q 010358 227 LDRFFNFFYLSVT 239 (512)
Q Consensus 227 r~~~~~~~~~~~~ 239 (512)
|++.+++++...+
T Consensus 343 ~g~~~g~~~~~~~ 355 (356)
T TIGR00901 343 GATQMALLSSLSA 355 (356)
T ss_pred cHHHHHHHHHHHh
Confidence 9999999776654
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.5e-07 Score=89.36 Aligned_cols=165 Identities=16% Similarity=0.132 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
..|.+.+..-+.++.+|.+..++|.++.+ .|+|..+++..++..........+++-++++|.-.+|+........+.+|
T Consensus 209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G 287 (395)
T COG2807 209 LAWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG 287 (395)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 45666666677889999999999999974 79999999999999999999999999999998767888888888889999
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
.+.+.+. | .+...+. .+++|+|.|+..+....++.+-.++.+ + -++
T Consensus 288 ~~G~~~~-------P--------------------~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~--~---Aa~ 333 (395)
T COG2807 288 LVGLLLA-------P--------------------GQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAA--I---AAA 333 (395)
T ss_pred HHHHHHh-------h--------------------hhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChH--H---HHH
Confidence 8888765 2 2333333 488999999999999999998776533 2 455
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhccc-hHHHHHHHHHHH
Q 010358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAM 269 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~l~~~~g-w~~~f~i~~~~~ 269 (512)
..++-+-...+-+.+||.+.|++.|..| |.......+...
T Consensus 334 LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~ 374 (395)
T COG2807 334 LSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALAT 374 (395)
T ss_pred HHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHH
Confidence 5666677777888899999999999876 776655444433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.9e-07 Score=97.43 Aligned_cols=156 Identities=12% Similarity=0.046 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 010358 74 IFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (512)
Q Consensus 74 i~~~~~~~~~~~~~v~~~l~~yl~~-~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~ 152 (512)
+++..++...+...... +..|..+ .++. ....+.......+...++.+++++++||+ |||+++.++.++..++...
T Consensus 234 l~~~~~~~~~~~~~~~~-~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~ 310 (444)
T PRK09669 234 MFIFNVVLLTAVVTRGG-ATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILSAL 310 (444)
T ss_pred HHHHHHHHHHHHHHHhh-hhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHH
Confidence 33334444344322223 3344433 3332 33334444555667778888999999997 9999998887665543332
Q ss_pred HhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhh-hhhhhhHH
Q 010358 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDRFF 231 (512)
Q Consensus 153 l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~-~~~r~~~~ 231 (512)
+.+. ++ .+...+++..++.+++.+...+...++++|..|.++.+. ++..+..+
T Consensus 311 ~~~~-------~~-------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~ 364 (444)
T PRK09669 311 IFFI-------PP-------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVF 364 (444)
T ss_pred HHHh-------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHH
Confidence 3222 11 355566777788999999999999999999998544221 12246678
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhccch
Q 010358 232 NFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (512)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~l~~~~gw 258 (512)
+.+.++..+|.++|+.++|++.+..|+
T Consensus 365 s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 365 STNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 889999999999999999998877766
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.7e-07 Score=91.99 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhh
Q 010358 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (512)
Q Consensus 87 ~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~ 156 (512)
....+.+.|+.+++|++..+.+...........++.++.|+++||+ |||+++.++.++..++.+.+.+.
T Consensus 221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344557788889999999999888888888999999999999997 99999999988888877776664
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-06 Score=87.39 Aligned_cols=158 Identities=16% Similarity=0.115 Sum_probs=110.1
Q ss_pred HHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccc
Q 010358 94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (512)
Q Consensus 94 ~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~ 173 (512)
..+.++.|++..+.+.+.....+...+..++.|.++||+ |||+..++.++++.+.-+..-.
T Consensus 58 Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~------------------ 118 (354)
T PF05631_consen 58 YALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS------------------ 118 (354)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc------------------
Confidence 334467999999999888888888888899999999998 9999999999888876543222
Q ss_pred cccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHhHHHHhh
Q 010358 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYI 252 (512)
Q Consensus 174 ~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~-~~~~lg~~l~p~i~~~l 252 (512)
.++..++++|++-|++......+.-+.......+++-. +.....-|+... +...+-++++..++-++
T Consensus 119 -----------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~-~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l 186 (354)
T PF05631_consen 119 -----------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFP-QEWLSDTFSLATFFGNGVVAIGAGVVANVL 186 (354)
T ss_pred -----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence 47889999999999999998888777664433322211 011333344333 33334455555666666
Q ss_pred hhccch--HHHHHHHHHHHHHHHHHHHhhccc
Q 010358 253 QMEHGW--GSAFGALAIAMGISNMLFFIGTPL 282 (512)
Q Consensus 253 ~~~~gw--~~~f~i~~~~~~i~~i~~~~~~~~ 282 (512)
.+..+. ..+|..+..+.+++.++....+++
T Consensus 187 ~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 187 ADWFGFGPVAPFDAAIVLLAVAAVLILKTWPE 218 (354)
T ss_pred HHHhCCCCcchHHHHHHHHHHHHHHHHhcccc
Confidence 666654 778888877777766665554444
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.9e-07 Score=94.24 Aligned_cols=160 Identities=9% Similarity=-0.037 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 010358 74 IFGNEMAERMAYFGLSVNMVTFMFYV-MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (512)
Q Consensus 74 i~~~~~~~~~~~~~v~~~l~~yl~~~-l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~ 152 (512)
..+..++......++.++++.|+.+. .+.+...++...+.+.....++.+++|+++||+ ++|+++.++.++..+..++
T Consensus 237 ~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~~ll 315 (410)
T TIGR00885 237 GVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMALCLG 315 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHH
Confidence 33344444444446678899998653 255555666667777788899999999999997 9999888887777766655
Q ss_pred HhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHH
Q 010358 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (512)
Q Consensus 153 l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~ 232 (512)
.... .+. .......+.+++.+.++|.+.+...+.++++. . .+..
T Consensus 316 ~~~~----------------------------~~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~-~~s~ 359 (410)
T TIGR00885 316 SIFA----------------------------GGH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------K-YGAA 359 (410)
T ss_pred HHHc----------------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------h-hhHH
Confidence 5553 111 23456677888888889999999999998654 2 2222
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhcc------chHHHHHHHHHHHHH
Q 010358 233 FFYLSVTVGAIVAFTLVVYIQMEH------GWGSAFGALAIAMGI 271 (512)
Q Consensus 233 ~~~~~~~lg~~l~p~i~~~l~~~~------gw~~~f~i~~~~~~i 271 (512)
...++ .+|+.+.|.+.|++.|.. +.+..|.++.++.+.
T Consensus 360 ~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~ 403 (410)
T TIGR00885 360 GLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV 403 (410)
T ss_pred HHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence 22223 399999999999999954 478888877766543
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-06 Score=88.19 Aligned_cols=127 Identities=14% Similarity=0.023 Sum_probs=82.9
Q ss_pred HHHHHHhhHhcCC---Chh----HHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHhhhhcccc
Q 010358 90 VNMVTFMFYVMHK---SFA----DSSNAVNNFLGISQASSVLGGFLADAYLG-RYWTIAIFTTIYLAGLTGITLCATMKV 161 (512)
Q Consensus 90 ~~l~~yl~~~l~~---s~~----~a~~~~~~~~~~~~l~~l~~G~LsD~~~G-R~~~i~~~~~l~~ig~~~l~~~~~~~~ 161 (512)
...|.|+++..+. +.. ..+...++.....++..|+-|-++|.. | ||+.+.+...+..+.+..+++.
T Consensus 36 ~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i----- 109 (438)
T COG2270 36 FIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFI----- 109 (438)
T ss_pred ehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHh-----
Confidence 4578888887665 333 334566677777788888999999987 7 5556666666666677777665
Q ss_pred cCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHH
Q 010358 162 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 241 (512)
Q Consensus 162 l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg 241 (512)
|+ +..+....+...+..++..+......+++.|..++++-+ |.+..+| -..++|
T Consensus 110 --~~------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~----riS~lg~--~~gylg 163 (438)
T COG2270 110 --PP------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMG----RISGLGW--ALGYLG 163 (438)
T ss_pred --CC------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccC----ccccccc--cccccc
Confidence 11 123444445555667888888888999999999887733 4444333 334455
Q ss_pred HHHHhHH
Q 010358 242 AIVAFTL 248 (512)
Q Consensus 242 ~~l~p~i 248 (512)
+.+.-++
T Consensus 164 s~i~li~ 170 (438)
T COG2270 164 SVILLIF 170 (438)
T ss_pred chHHHHH
Confidence 5544433
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.3e-06 Score=90.33 Aligned_cols=162 Identities=14% Similarity=0.040 Sum_probs=117.5
Q ss_pred HHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc--cc--hHHHHHHHHHHHHHHHHHHhhhhcccccCCCC
Q 010358 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY--LG--RYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (512)
Q Consensus 91 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~--~G--R~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~ 166 (512)
....|+++++|+++++.....+....-.. .-++.|.++|.+ +| ||+-++++.++..++.+.++.... .
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~---~---- 82 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA---S---- 82 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc---c----
Confidence 45678899999999988776665555444 456789999996 34 555556677666555555554311 0
Q ss_pred CcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHh
Q 010358 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (512)
Q Consensus 167 ~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p 246 (512)
..+.....+..++..+|......+..+...|....+... ++...++.+....+|++++.
T Consensus 83 -----------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~ 141 (433)
T PF03092_consen 83 -----------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGS 141 (433)
T ss_pred -----------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHH
Confidence 023344556667788899888899999999987655422 78888899999999999999
Q ss_pred HHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 010358 247 TLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (512)
Q Consensus 247 ~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~ 281 (512)
.+.|++.+..++++.|.+.+++..+.++..+...+
T Consensus 142 ~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 142 LLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred HhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999888776666555444444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.2e-06 Score=86.30 Aligned_cols=160 Identities=15% Similarity=0.119 Sum_probs=118.9
Q ss_pred HHHHHHHHHhhHhcCCChhHH-HHHHHHH----HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccc
Q 010358 87 GLSVNMVTFMFYVMHKSFADS-SNAVNNF----LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 161 (512)
Q Consensus 87 ~v~~~l~~yl~~~l~~s~~~a-~~~~~~~----~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~ 161 (512)
....+...+....++.+.... +...... .....+..++.|.++|+| |||..+.+..+...+..+.+.+.
T Consensus 39 ~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~----- 112 (463)
T KOG2816|consen 39 TVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQ----- 112 (463)
T ss_pred cchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHH-----
Confidence 344666777766666544433 2333333 466777888999999998 99999999998888877666663
Q ss_pred cCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHH--hhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHH
Q 010358 162 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGF--GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (512)
Q Consensus 162 l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~--g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~ 239 (512)
. +++++ +.++ +.+...+...++++|...+++ |...+++.+.+..
T Consensus 113 ------------------------~-~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~ 158 (463)
T KOG2816|consen 113 ------------------------G-YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFG 158 (463)
T ss_pred ------------------------H-HHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHHHHHHHHHHH
Confidence 2 22222 3333 334567778888999998887 9999999999999
Q ss_pred HHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhccccccc
Q 010358 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 286 (512)
Q Consensus 240 lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~ 286 (512)
.+..++|.+++++.+..|....|.+.++..+++.+...+..++...+
T Consensus 159 ~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~ 205 (463)
T KOG2816|consen 159 AGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQE 205 (463)
T ss_pred HHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCc
Confidence 99999999999999999999999999988888877766666655444
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.9e-06 Score=85.26 Aligned_cols=174 Identities=9% Similarity=0.003 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhh
Q 010358 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (512)
Q Consensus 76 ~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~ 155 (512)
+..++...+.-....+...|+++.-+.+....+...++..+.=.+.-.+.+++-.|+ |-++++.++.+.+++=..+++.
T Consensus 214 l~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~~l~a~ 292 (400)
T PF03825_consen 214 LAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRWLLYAY 292 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444567788998876557777777666666666777777889999997 9999999999888875555555
Q ss_pred hhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHH
Q 010358 156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235 (512)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~ 235 (512)
... |. ........++..+.|+..+........++.+..|++. |.++.++|.
T Consensus 293 ~~~-----~~------------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~ 343 (400)
T PF03825_consen 293 FSD-----PW------------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYS 343 (400)
T ss_pred hcC-----Cc------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHH
Confidence 310 00 0112233444567899999999999999999999988 999999976
Q ss_pred H-HHHHHHHHHhHHHHhhhhccchH------HHHHHHHHHHHHHHHHHHhh
Q 010358 236 L-SVTVGAIVAFTLVVYIQMEHGWG------SAFGALAIAMGISNMLFFIG 279 (512)
Q Consensus 236 ~-~~~lg~~l~p~i~~~l~~~~gw~------~~f~i~~~~~~i~~i~~~~~ 279 (512)
. ...+|+++|..++|++.|++|-+ ..+.+++++.++..+++.+.
T Consensus 344 ~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 344 ALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 6 45799999999999999987744 34445555555555555443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.56 E-value=3e-06 Score=90.61 Aligned_cols=187 Identities=11% Similarity=0.095 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhH----HHHHHHHHHHHHHHHHHHHH----HHHhhccchHHHH--
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD----SSNAVNNFLGISQASSVLGG----FLADAYLGRYWTI-- 139 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~----a~~~~~~~~~~~~l~~l~~G----~LsD~~~GR~~~i-- 139 (512)
.++.+++..++..+.+....+.++.|..+..+.+... .+++.+.-.+...+..++.. ++.+|-.+.+...
T Consensus 273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~ 352 (475)
T TIGR00924 273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF 352 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence 4444455555555666666677888887765544221 34444443334444444333 4555421333333
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCC
Q 010358 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (512)
Q Consensus 140 ~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~ 219 (512)
.++.++..++...+++...... .+...+.+++++..++.++|.....|...++.++..|++
T Consensus 353 ~~G~~l~~~~~~~~~~~~~~~~-------------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~ 413 (475)
T TIGR00924 353 TLGMLFCGASFLTFAASIWFAD-------------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQR 413 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-------------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH
Confidence 6777777777777665311100 001147788899999999999999999999999999988
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 010358 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (512)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~ 281 (512)
. |++.+++++++..+|..+++.+.....+..+|...|...++..++..+++++..+
T Consensus 414 ~------~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 414 L------MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7 9999999999999999999999888777778888887777776666555555443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.8e-07 Score=91.99 Aligned_cols=138 Identities=10% Similarity=-0.009 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 010358 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (512)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~ 151 (512)
+.+.+..++.....+++..+++.|+++.+|++..+++.....+.+...++.+++|+++||+ |||+.+..+..+..++..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~ 306 (366)
T TIGR00886 228 WILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGAF 306 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHHH
Confidence 3444444555556667788899999999999999999888888888999999999999998 999888877776666655
Q ss_pred HHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHH
Q 010358 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (512)
Q Consensus 152 ~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (512)
++.+... + ..+...+++..++.+++.|...+...+..++.+|. + ++...
T Consensus 307 ~~~~~~~-----~-------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~------~g~~~ 355 (366)
T TIGR00886 307 LVVLGLV-----S-------------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-A------TGAVS 355 (366)
T ss_pred HHHhcCC-----C-------------------cchHHHHHHHHHHHHHHhccccchhhhcchhhchh-h------cccHH
Confidence 5544311 0 01344455555566666666667777778888773 4 78888
Q ss_pred HHHHHHHHHH
Q 010358 232 NFFYLSVTVG 241 (512)
Q Consensus 232 ~~~~~~~~lg 241 (512)
++++...++|
T Consensus 356 g~~~~~~~~g 365 (366)
T TIGR00886 356 GLVGAIGNLG 365 (366)
T ss_pred HHHHHhccCC
Confidence 8877666654
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7e-08 Score=92.68 Aligned_cols=156 Identities=15% Similarity=0.196 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
+..+.++..|...+.| ---..+..+.+.+.+.+.++..++.++|..-..+.+.++||+.||.+|-|..-++-+.+..+|
T Consensus 45 ~lv~mc~lgfgsyfcy-d~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~G 123 (459)
T KOG4686|consen 45 ALVFMCLLGFGSYFCY-DAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLG 123 (459)
T ss_pred HHHHHHHhcccceeec-CCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHH
Confidence 4444444444444433 222346677777778887888899999999999999999999999999888777767777778
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
.++++.-.. ...++.+..+|++.|+|.-..-...+.+..-+|..++ ...
T Consensus 124 qliFa~Ggi-------------------------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~ 172 (459)
T KOG4686|consen 124 QLIFAAGGI-------------------------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNF 172 (459)
T ss_pred HHHHHhchH-------------------------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccc
Confidence 887776422 1567889999999999987777788899999999988 899
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhccc
Q 010358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~l~~~~g 257 (512)
.|++......+|+.+-..+.+++.+..+
T Consensus 173 vfGlqlSvAR~GstvNf~lm~~ly~~~~ 200 (459)
T KOG4686|consen 173 VFGLQLSVARLGSTVNFLLMPFLYDTMG 200 (459)
T ss_pred hhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence 9999888888888877777777776554
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-05 Score=84.01 Aligned_cols=141 Identities=11% Similarity=-0.064 Sum_probs=96.9
Q ss_pred HHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCc
Q 010358 89 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 168 (512)
Q Consensus 89 ~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~ 168 (512)
....+.|+++.+|++..+.+........+..++.++.+++.||+ ||+.. .......++.+.+...... ..
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~----~~--- 296 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMW--QSVICCLLAGLLMWIPGWF----GV--- 296 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHh----cc---
Confidence 34557788888999999888887777777778888888888887 74332 2222222222222211000 00
Q ss_pred ccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHH
Q 010358 169 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248 (512)
Q Consensus 169 ~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i 248 (512)
.+...++++..+.++|.+...+...+...|.+|+ + ++...++++...++|+.+++.+
T Consensus 297 ----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~~ 353 (394)
T PRK11652 297 ----------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAALL 353 (394)
T ss_pred ----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHHH
Confidence 2344566677888889888899999988888873 4 6788888888889999999999
Q ss_pred HHhhhhccchHHHH
Q 010358 249 VVYIQMEHGWGSAF 262 (512)
Q Consensus 249 ~~~l~~~~gw~~~f 262 (512)
++++.....+....
T Consensus 354 ~~~~~~~~~~~~~~ 367 (394)
T PRK11652 354 SAMLPQTGQFSLGL 367 (394)
T ss_pred HHHccCCchHHHHH
Confidence 99887665454433
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-08 Score=109.70 Aligned_cols=198 Identities=15% Similarity=0.089 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhh
Q 010358 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (512)
Q Consensus 76 ~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~ 155 (512)
+..+.+ +..++......+-+.+.|+++.++++++.+.+-++..+..++..++.+|. -|-|.+-++.++..+|.+++++
T Consensus 10 ~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~l 87 (539)
T PF03137_consen 10 LLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFAL 87 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhc
Confidence 344444 66667777778888999999999999999999999999999999999986 6777888899999999998887
Q ss_pred hhcccc-cCCCCC---cccccccccCCC---------------C---Ccc-hhhHHHHHHHHHHHHHhhcChhhhhhhHh
Q 010358 156 CATMKV-FMPNQD---NCDRISQLLGSC---------------E---PAK-SWQMLYLYTVLYITGFGAAGIRPCVSSFG 212 (512)
Q Consensus 156 ~~~~~~-l~~~~~---~~~~~~~~~~~c---------------~---~~~-~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ 212 (512)
.-++.. ..+.+. .|.. ..+...| . ... ..-+.+++++.++.|+|....++...+++
T Consensus 88 Phf~~~~y~~~~~~~~~~~~-~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi 166 (539)
T PF03137_consen 88 PHFLSGPYSYEEASNSNGNS-SISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI 166 (539)
T ss_dssp -----------------------------------------------------------------SSS------------
T ss_pred cHhhcCCCcccccccccccc-ccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence 532211 100000 0000 0000112 1 111 12346778889999999999999999999
Q ss_pred hccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhc---------------------cc-hHHHHHHHHHHHH
Q 010358 213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---------------------HG-WGSAFGALAIAMG 270 (512)
Q Consensus 213 ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~---------------------~g-w~~~f~i~~~~~~ 270 (512)
=|-.+++. -...+++++....+|+++|-++++.+.+. .| |+.+|.+.+++.+
T Consensus 167 DDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~ 240 (539)
T PF03137_consen 167 DDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLF 240 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 88888777 67888889999999999999888865421 24 9999998888776
Q ss_pred HHHHHHHhhccc
Q 010358 271 ISNMLFFIGTPL 282 (512)
Q Consensus 271 i~~i~~~~~~~~ 282 (512)
+..+.++...++
T Consensus 241 l~aipl~~FPk~ 252 (539)
T PF03137_consen 241 LSAIPLFFFPKK 252 (539)
T ss_dssp ------------
T ss_pred HHHHHHHcCCcc
Confidence 655555444333
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-05 Score=82.85 Aligned_cols=177 Identities=8% Similarity=0.066 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHK---SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~---s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~ 146 (512)
.+|.+.+........|+..-...+.|.+..++- ++...+...+.-.+.-.+.-.+..++-+|+ |-|+.++++..+.
T Consensus 221 ~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i~ 299 (412)
T PF01306_consen 221 NFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVIM 299 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHHH
Confidence 555555444444444544544578888766553 233345566666667777778889999997 9999999999988
Q ss_pred HHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 147 ~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
.+=.+.++++ .+.+.+.+...+.++-.+.......-++++.+|++-
T Consensus 300 ~iRi~~~~~~----------------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------ 345 (412)
T PF01306_consen 300 AIRIIGSGFA----------------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------ 345 (412)
T ss_dssp HHHHHHHHT------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------
T ss_pred HHHHHHHhhh----------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------
Confidence 8877777776 567788889999999999999999999999999776
Q ss_pred hhhHHHH-HHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 010358 227 LDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (512)
Q Consensus 227 r~~~~~~-~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~ 281 (512)
..+.+.+ +.++..+|.++.+.++|++.|+.|++..|++.++++++..++..+..+
T Consensus 346 sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 346 SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence 6777777 578889999999999999999999999998877776666555554443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-05 Score=76.93 Aligned_cols=154 Identities=12% Similarity=0.120 Sum_probs=104.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 010358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (512)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~ 146 (512)
||..+.....+..+.. ..|.... ....+++.+|+++.+...+...-..+.+++ ++.|.+.|++ |.+.++.++.+..
T Consensus 1 rW~~l~a~~~v~~~~G-t~Y~Fs~-yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~ 76 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSG-TTYTFSA-YSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLG 76 (250)
T ss_pred ChhhHHHHHHHHHhcC-cccchhh-hhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHH
Confidence 4554444444444433 3334443 477788999999999999998888888875 7889999998 9999999999999
Q ss_pred HHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 147 ~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
.+|+.++.++..-.. + ....+.+.+..++.+.+.+...........+.||+ +
T Consensus 77 ~~GY~~~~l~~~~~i--~-------------------~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------ 128 (250)
T PF06813_consen 77 FVGYGLLWLAVSGRI--P-------------------SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------ 128 (250)
T ss_pred HHHHHHHHHHHhCcc--C-------------------ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------
Confidence 999999888633110 0 02445555555555566555555555555688985 5
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHhh
Q 010358 227 LDRFFNFFYLSVTVGAIVAFTLVVYI 252 (512)
Q Consensus 227 r~~~~~~~~~~~~lg~~l~p~i~~~l 252 (512)
||...++.-....+++.+-..+...+
T Consensus 129 RG~vvgilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 129 RGTVVGILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred cCceehhhhHHHHhHHHHHHHHHHHH
Confidence 88888886666666655544444333
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-05 Score=84.46 Aligned_cols=157 Identities=10% Similarity=0.028 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 010358 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (512)
Q Consensus 74 i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l 153 (512)
++...++..++..........|.+..+|.. ...+.+...+.+...++.+++++++||+ |+|+++..+..+..+..+++
T Consensus 233 l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~~ 310 (460)
T PRK11462 233 VGLLTIFNILAVCVRGGAMMYYVTWILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLAM 310 (460)
T ss_pred HHHHHHHHHHHHHHHHhHhhhhhhhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHH
Confidence 333344444444333333333333334433 3334556677778888999999999997 99988765554443333333
Q ss_pred hhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh-hhhHHH
Q 010358 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH-LDRFFN 232 (512)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~-r~~~~~ 232 (512)
.+. |. .+...+++..++.+++.+...+...++.+|..+.++-+..+. -+..++
T Consensus 311 ~~~-------~~-------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a 364 (460)
T PRK11462 311 FFV-------PM-------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFA 364 (460)
T ss_pred HHh-------ch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHH
Confidence 222 11 223334445566777777777777888888877443221111 244456
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhccch
Q 010358 233 FFYLSVTVGAIVAFTLVVYIQMEHGW 258 (512)
Q Consensus 233 ~~~~~~~lg~~l~p~i~~~l~~~~gw 258 (512)
.+.++..+|..+++.++|++.+..||
T Consensus 365 ~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 365 GTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 67788889999999888887665554
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-05 Score=80.83 Aligned_cols=86 Identities=10% Similarity=0.064 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhc---------
Q 010358 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------- 255 (512)
Q Consensus 185 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~--------- 255 (512)
.++..++++.+++|.|.+..++..++++++..++++ +.+.+++......+|..++|.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 578899999999999999999999999999999877 88999999999999999999999987632
Q ss_pred -------cchHHHHHHHHHHHHHHHHHH
Q 010358 256 -------HGWGSAFGALAIAMGISNMLF 276 (512)
Q Consensus 256 -------~gw~~~f~i~~~~~~i~~i~~ 276 (512)
..|++.|++.+++.++..+++
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888886655544444333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.9e-06 Score=86.45 Aligned_cols=161 Identities=14% Similarity=0.046 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
....+++..++...++....+..+.|.+..++.+...+.........+..++.++.-.|++|+ |+|+++.++.++.+++
T Consensus 237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~ 315 (467)
T COG2211 237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVG 315 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHH
Confidence 344455566666666666667778888888998888888888888888888899999999997 9999999999999999
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhh-hhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK-THLD 228 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~-~~r~ 228 (512)
.+++.+.. . .+..++++...+.++|.+...+...++++|..+-++-+.- +.-|
T Consensus 316 ~~~~~f~~-------~-------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eG 369 (467)
T COG2211 316 YLLLYFTP-------A-------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREG 369 (467)
T ss_pred HHHHHhhc-------C-------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchh
Confidence 99888862 1 5677888888899999999999999999999875443221 1125
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhccc
Q 010358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (512)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~l~~~~g 257 (512)
..++.+.+..=+|.+++..+.|++....|
T Consensus 370 i~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 370 IVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55666777777888888877777755444
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.9e-05 Score=84.91 Aligned_cols=207 Identities=14% Similarity=0.126 Sum_probs=146.3
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 010358 69 IAALFIF-GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (512)
Q Consensus 69 ~~~~~i~-~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ 147 (512)
+.+..++ +..+...+.. +......+-+.+.|+++..+.+++.+.+-++..+...+..+..-|. -|-+.|-++.+++.
T Consensus 96 k~fl~~l~~~~~~q~l~~-~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~ 173 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYV-GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMG 173 (735)
T ss_pred chHHHHHHHHHHHHHhhh-hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHH
Confidence 3344433 3444444444 7777788888999999999999999999999999999999999986 77788889999999
Q ss_pred HHHHHHhhhhccc-cc------------CC----CCCccccccc----ccCCCC--Ccchh-hHHHHHHHHHHHHHhhcC
Q 010358 148 AGLTGITLCATMK-VF------------MP----NQDNCDRISQ----LLGSCE--PAKSW-QMLYLYTVLYITGFGAAG 203 (512)
Q Consensus 148 ig~~~l~~~~~~~-~l------------~~----~~~~~~~~~~----~~~~c~--~~~~~-~~~~l~~~~~l~g~g~g~ 203 (512)
+|.+++++.-+.. .. .+ ..+.|++..+ .+..|. ..+.. -+.+++++.++.|+|...
T Consensus 174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp 253 (735)
T KOG3626|consen 174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP 253 (735)
T ss_pred HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence 9999888742110 00 00 0001111001 011121 12222 334778889999999999
Q ss_pred hhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhc------------------cc-hHHHHHH
Q 010358 204 IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME------------------HG-WGSAFGA 264 (512)
Q Consensus 204 ~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~------------------~g-w~~~f~i 264 (512)
+++...+++=|-..+++ -...+++++....+|+++|.++++++... .| |+.+|.+
T Consensus 254 i~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi 327 (735)
T KOG3626|consen 254 IFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLI 327 (735)
T ss_pred CccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHH
Confidence 99999999977777666 67888999999999999999999887431 24 9999999
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 010358 265 LAIAMGISNMLFFIGTPLY 283 (512)
Q Consensus 265 ~~~~~~i~~i~~~~~~~~~ 283 (512)
++.+.++..+.+++.-+..
T Consensus 328 ~g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 328 CGALLLFSAVPLFFFPKEL 346 (735)
T ss_pred HHHHHHHHHHHHHhCcccC
Confidence 9988877777666654433
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.3e-05 Score=75.06 Aligned_cols=141 Identities=21% Similarity=0.265 Sum_probs=104.6
Q ss_pred hhHhcCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccc
Q 010358 96 MFYVMHKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (512)
Q Consensus 96 l~~~l~~s~--~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~ 173 (512)
....++.+. ...+...+.+.....++.++.|.++||+ |||+.+..+.....++.++..+...
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~--------------- 91 (338)
T COG0477 28 LLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN--------------- 91 (338)
T ss_pred HHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc---------------
Confidence 334455444 4778888888888888889999999998 9998888887765555444444310
Q ss_pred cccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCC-CChhhhhhhhhHHHHHHH-HHHHHHHHHhHHHHh
Q 010358 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVY 251 (512)
Q Consensus 174 ~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~-~~~~~~~~r~~~~~~~~~-~~~lg~~l~p~i~~~ 251 (512)
.....+.+.+++.|++.+...+...+++.|.+|. +. |+...+.... ...+|..++|.+++.
T Consensus 92 -----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T COG0477 92 -----------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAGL 154 (338)
T ss_pred -----------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2467788888889999999999999999999987 33 7888888777 577888888877776
Q ss_pred hhhc--cchHHHHHHHHHHH
Q 010358 252 IQME--HGWGSAFGALAIAM 269 (512)
Q Consensus 252 l~~~--~gw~~~f~i~~~~~ 269 (512)
+... .+|++.|.+.....
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 155 LLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHhcchHHHHHHHHHHH
Confidence 6554 57888665544443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.8e-06 Score=89.44 Aligned_cols=164 Identities=12% Similarity=0.114 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIFTTIY 146 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~---~GR~~~i~~~~~l~ 146 (512)
.+|...+..++.....|++..+++.|+++..|++..++..+...+.++..++.++.|+++||. +.+|..+..+..++
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 678888899999999999999999999997789999999999999999999999999999993 26666666655554
Q ss_pred HH-HHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhh
Q 010358 147 LA-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (512)
Q Consensus 147 ~i-g~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (512)
.+ |.+.+... ........+.+....+.+...++...-..+....+.
T Consensus 354 ~~~g~~~l~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~----- 400 (495)
T KOG2533|consen 354 AIIGAISLLAA----------------------------AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT----- 400 (495)
T ss_pred HHHHHHHHHhh----------------------------ccchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----
Confidence 44 33333332 111222222222333333344444444555554332
Q ss_pred hhhhHHHHHHHHHHHHHHHH-hHHHHhhhhccchHHHHHHHH
Q 010358 226 HLDRFFNFFYLSVTVGAIVA-FTLVVYIQMEHGWGSAFGALA 266 (512)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~l~-p~i~~~l~~~~gw~~~f~i~~ 266 (512)
++-+..+.+..+.+.+++++ ++..+.....++|.+.|.+..
T Consensus 401 k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~ 442 (495)
T KOG2533|consen 401 KALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV 442 (495)
T ss_pred HhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHH
Confidence 24555555555555554444 445555666678888884433
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.7e-05 Score=78.28 Aligned_cols=199 Identities=12% Similarity=0.029 Sum_probs=125.3
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 010358 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (512)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~ 140 (512)
.+..++||..++...+..+.+.+... -......|..+.++ +...+.+...+|+..+....+.+-|+.|++ |-|.+.+
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI-~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~l 113 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWI-QYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALL 113 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchhe-eehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHH
Confidence 35566778655555555555533321 11234556666777 556667888889999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCC
Q 010358 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (512)
Q Consensus 141 ~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~ 220 (512)
++.++..+|..+=.++.. +...|. ....+.+++..+.+..+-.+...-+-..+-+|++++
T Consensus 114 lgt~ln~iGa~Ir~iss~-p~v~~~-------------------f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q 173 (480)
T KOG2563|consen 114 LGTVLNGIGAWIRLISSL-PFVPPL-------------------FRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ 173 (480)
T ss_pred HHHHHHHHHHHHhhhccC-cccccc-------------------chhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch
Confidence 999999999887766532 111111 111356677777777766655555566677999888
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhcc------chHHH--HHHHHHHHHHHHHHHHhhcccccccCC
Q 010358 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH------GWGSA--FGALAIAMGISNMLFFIGTPLYRHRLP 288 (512)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~------gw~~~--f~i~~~~~~i~~i~~~~~~~~~~~~~~ 288 (512)
|..+-..-.++..+|..++.++...+..+. .|... |....++..+.+++..+.+++..+.||
T Consensus 174 ------ra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPp 243 (480)
T KOG2563|consen 174 ------RAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPP 243 (480)
T ss_pred ------hhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 888877766666666666666655554432 35442 333333333333334444444444444
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.9e-05 Score=84.71 Aligned_cols=176 Identities=7% Similarity=0.031 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhcCCChh----HHHHHHHHHHHHHHHHHHHHHHHHhhccchHH-------HHHHHHHHH
Q 010358 78 EMAERMAYFGLSVNMVTFMFYVMHKSFA----DSSNAVNNFLGISQASSVLGGFLADAYLGRYW-------TIAIFTTIY 146 (512)
Q Consensus 78 ~~~~~~~~~~v~~~l~~yl~~~l~~s~~----~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~-------~i~~~~~l~ 146 (512)
..+....+......++.|+.+..+.+.. ......+...+...+..++.|++.||+ |||+ -+.++.++.
T Consensus 278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~ 356 (489)
T PRK10207 278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLC 356 (489)
T ss_pred HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHH
Confidence 4444455555556777887753333211 123333333344556667778999998 9887 377777777
Q ss_pred HHHHHHHhhhhc-ccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhh
Q 010358 147 LAGLTGITLCAT-MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (512)
Q Consensus 147 ~ig~~~l~~~~~-~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (512)
.++.+.++.... .....+ ..+.+++....++.++|.+...+...+++.+..|++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~-------------------~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~----- 412 (489)
T PRK10207 357 SLGFLTAAAAGMWFADAQG-------------------LTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL----- 412 (489)
T ss_pred HHHHHHHHHHHHhhcCCCC-------------------ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH-----
Confidence 777655432211 000000 1345667778889999999999999999999999887
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHhhhh----------ccchHHHHHHHHHHHHHHHHHHHhh
Q 010358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFIG 279 (512)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~l~p~i~~~l~~----------~~gw~~~f~i~~~~~~i~~i~~~~~ 279 (512)
++..++.+++..++|+.++..++.+... ...+.+.|...++..++..+++++.
T Consensus 413 -~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~ 475 (489)
T PRK10207 413 -MGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM 475 (489)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999888765521 1124556666665555444444443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.7e-05 Score=79.03 Aligned_cols=139 Identities=14% Similarity=0.125 Sum_probs=106.6
Q ss_pred HHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCC
Q 010358 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (512)
Q Consensus 87 ~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~ 166 (512)
.+.++++.|+.+..|.+..+++..++.+.++.++|..++-++-.|+ -..|.+.+..++-.+-.+...+.
T Consensus 254 a~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~~~~~l~---------- 322 (422)
T COG0738 254 AIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLLLAVALI---------- 322 (422)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 4557899999999999999999999999999999999999998887 77777666665443333333332
Q ss_pred CcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHh
Q 010358 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (512)
Q Consensus 167 ~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p 246 (512)
.+ ..-..+.+++|+..+...|.+.+...+-.+++.. .++. .-....+|+++-|
T Consensus 323 ------------------~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~s~---~l~maivGGAiiP 375 (422)
T COG0738 323 ------------------GG-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VGSG---LLVMAIVGGAIIP 375 (422)
T ss_pred ------------------cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----ccce---eeeeheecchHHH
Confidence 22 3445567789999999999999999999995442 2322 2234458999999
Q ss_pred HHHHhhhhccchHHHHH
Q 010358 247 TLVVYIQMEHGWGSAFG 263 (512)
Q Consensus 247 ~i~~~l~~~~gw~~~f~ 263 (512)
.+.|++.|+.|-...+.
T Consensus 376 ~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 376 PLQGVIADMFGIQLTFL 392 (422)
T ss_pred HHHHHHHHhhhhHHHHH
Confidence 99999999999877766
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.4e-06 Score=86.13 Aligned_cols=168 Identities=13% Similarity=0.009 Sum_probs=119.8
Q ss_pred HHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCC
Q 010358 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (512)
Q Consensus 87 ~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~ 166 (512)
.+-+.++.++.+.+..+.-+.+++..-..+.+.++..+.|.++||+ +.-+-.....-+.++|.......
T Consensus 288 fLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~~~~iP---------- 356 (464)
T KOG3764|consen 288 FLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVSSGPIP---------- 356 (464)
T ss_pred HhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHHhchhH----------
Confidence 3456678888888886555888888888889999999999999998 83222222222333342222221
Q ss_pred CcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHh
Q 010358 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (512)
Q Consensus 167 ~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p 246 (512)
.| .++..+++-+..++++.+...+...+......+.+...+-..-++.+++...+..+|..+||
T Consensus 357 -~~---------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP 420 (464)
T KOG3764|consen 357 -FA---------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGP 420 (464)
T ss_pred -hh---------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccc
Confidence 12 46667777777888888877777777777776655432111368888899999999999999
Q ss_pred HHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 010358 247 TLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (512)
Q Consensus 247 ~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~ 281 (512)
+++|.+.+..|++|.-.+.++..++...++.+.+.
T Consensus 421 ~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll~~ 455 (464)
T KOG3764|consen 421 TFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLLRI 455 (464)
T ss_pred cccchheeehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988777777666666555443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.7e-05 Score=78.27 Aligned_cols=169 Identities=12% Similarity=0.031 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
.++...+..++....+++....+|.|+++.+|++..+.+.......++..++..+.+.+.++. ++++.+.....+..+|
T Consensus 219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig 297 (413)
T PRK15403 219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVG 297 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHH
Confidence 444455555566666667777789999999999999999887777777777767777665444 3444443334444445
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
..++...... .+ .+...++++.++.++|.+...|+.....-.+.+. . +++
T Consensus 298 ~~l~~~~~~~---~~--------------------~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~~-~------~G~ 347 (413)
T PRK15403 298 LALLIVGNLL---WP--------------------HVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNNL-P------KGT 347 (413)
T ss_pred HHHHHHHHHH---cc--------------------ccHHHHHHHHHHHHHHHHHHhHHHHHHHhccCCC-C------CcH
Confidence 4444332110 01 2333356677788888888887777533222221 2 566
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHH
Q 010358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~ 270 (512)
..+.+......+..+++.+.+++..+ +-.+.|.+..++..
T Consensus 348 a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~ 387 (413)
T PRK15403 348 VSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG 387 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence 66777777777788888888888665 44556655444433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.3e-05 Score=81.02 Aligned_cols=174 Identities=14% Similarity=0.126 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHhhH--hcCCCh------hHHHHHHHHHHHHHHHHHHHH----HHHHhhccchHHHHHHHHHHH
Q 010358 79 MAERMAYFGLSVNMVTFMFY--VMHKSF------ADSSNAVNNFLGISQASSVLG----GFLADAYLGRYWTIAIFTTIY 146 (512)
Q Consensus 79 ~~~~~~~~~v~~~l~~yl~~--~l~~s~------~~a~~~~~~~~~~~~l~~l~~----G~LsD~~~GR~~~i~~~~~l~ 146 (512)
++....||.+...++.++.. ..+.+. ...++..+.-.+...++.++. +++.||+ +..+.+.++.++.
T Consensus 282 ~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~ 360 (500)
T PRK09584 282 MLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLC 360 (500)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHH
Confidence 34555666666666666543 111111 113333343333444444444 5556664 6667888899998
Q ss_pred HHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 147 ~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
.++.+.++....... . | ...+..++.+..++.++|.+...|...+++.+..|++.
T Consensus 361 ~l~f~~l~~~~~~~~------~----------~---~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------ 415 (500)
T PRK09584 361 SGAFLVLPLGAKFAN------D----------A---GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------ 415 (500)
T ss_pred HHHHHHHHHHHHhcC------C----------C---CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------
Confidence 888888776522110 0 0 01345578888999999999999999999999999888
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHhhhh----------ccchHHHHHHHHHHHHHHHHHHHh
Q 010358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 227 r~~~~~~~~~~~~lg~~l~p~i~~~l~~----------~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
|++.++.++++..+|+.++..+.+.... ..++.+.|...+++.++..+++++
T Consensus 416 rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 416 MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888887776653321 123667777666655444444433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00016 Score=73.94 Aligned_cols=156 Identities=15% Similarity=0.117 Sum_probs=127.4
Q ss_pred HHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcc
Q 010358 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (512)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~ 169 (512)
..+-+|--+.||++..+.+.....+.++..++-.+.|++..+-.|++++..+++.+..++..++.++...
T Consensus 229 ~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~---------- 298 (403)
T PF03209_consen 229 VILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL---------- 298 (403)
T ss_pred HHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence 3466888889999999999999999999999999999998865699999999999988888777776431
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHH
Q 010358 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (512)
Q Consensus 170 ~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~ 249 (512)
.+.+.+..+.+++|+|.|.+.....+...|+..++. .+.+++.+-.+..+...++..++
T Consensus 299 ---------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Glg~~~G 357 (403)
T PF03209_consen 299 ---------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGLGTFLG 357 (403)
T ss_pred ---------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999988888888889988776 78999999999998888888888
Q ss_pred Hhhhhc----------cchHHHHHHHHHHHHHHHHHH
Q 010358 250 VYIQME----------HGWGSAFGALAIAMGISNMLF 276 (512)
Q Consensus 250 ~~l~~~----------~gw~~~f~i~~~~~~i~~i~~ 276 (512)
|.+.|. .+|...|.+-++.+++++.+.
T Consensus 358 G~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 358 GALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 877552 346677777777666655543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.1e-08 Score=104.80 Aligned_cols=188 Identities=14% Similarity=0.063 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
.....+....+..+..+....+...++.+..+.+.. ........+...++.+++.++.||+ |||++++++.++..+.
T Consensus 253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~ 329 (451)
T PF00083_consen 253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC 329 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence 333444444444444433444445566666777666 2222233345556777778999997 9999999988887776
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhc-ChhhhhhhHhhccCCCCChhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA-GIRPCVSSFGADQFDERSKDYKTHLD 228 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g-~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (512)
.+.++.... ..+. .++..+... ++...+..++.+ +..+....+.+|.||++. |.
T Consensus 330 ~~~~~~~~~---~~~~---------------~~~~~~~~~-i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~ 384 (451)
T PF00083_consen 330 SLILGIIFF---LGVS---------------SSSWWSILS-IVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RS 384 (451)
T ss_pred ccccccccc---cccc---------------ccccccccc-ceeeeeccccccccccccccccccccccccc------cc
Confidence 666641100 0000 000011111 112222222222 344566688899999988 99
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285 (512)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~ 285 (512)
++.++.+....+++.+++.+..++.+..+-...|.+.+++.++..++.++..++.+.
T Consensus 385 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g 441 (451)
T PF00083_consen 385 TGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKG 441 (451)
T ss_pred cccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCC
Confidence 999998888889999999988888877763345555555555555555454454443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.1e-05 Score=82.70 Aligned_cols=138 Identities=9% Similarity=-0.159 Sum_probs=105.9
Q ss_pred HhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCccccccc
Q 010358 95 FMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 174 (512)
Q Consensus 95 yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~ 174 (512)
+..+.+|+++...+.+.....++..++..+.+++.+|+ +.|+++.++.++..++.....+....+.....
T Consensus 278 ~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~g--------- 347 (468)
T TIGR00788 278 ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAFG--------- 347 (468)
T ss_pred EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccccC---------
Confidence 33467999999999999999999999999999999987 99999999998888776554322110100000
Q ss_pred ccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhh
Q 010358 175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (512)
Q Consensus 175 ~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~ 254 (512)
-.+...+.....+.+++.+........++.+..|++. +++.++++....++|..+++.+++++.+
T Consensus 348 ---------i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~ 412 (468)
T TIGR00788 348 ---------ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLME 412 (468)
T ss_pred ---------CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112233444567778888778888999999999888 8999999999999999999999999988
Q ss_pred ccc
Q 010358 255 EHG 257 (512)
Q Consensus 255 ~~g 257 (512)
..|
T Consensus 413 ~~g 415 (468)
T TIGR00788 413 TIG 415 (468)
T ss_pred HcC
Confidence 777
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00032 Score=74.61 Aligned_cols=208 Identities=15% Similarity=-0.017 Sum_probs=137.2
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-hcCCChh------HH---H-HHHHHHHHHHHHHHHHHHHHHh
Q 010358 62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFA------DS---S-NAVNNFLGISQASSVLGGFLAD 130 (512)
Q Consensus 62 ~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~-~l~~s~~------~a---~-~~~~~~~~~~~l~~l~~G~LsD 130 (512)
+..++-++.++.++..+++.-++++.+..+...|+.+ .+|-++. +. + +....+.+...+..++--++.+
T Consensus 251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~ 330 (477)
T TIGR01301 251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR 330 (477)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678899999999999999999999998888875 4554321 11 2 2233333444455566677888
Q ss_pred hccc-hHHHHHHHHHHHHHHHHHHhhhhcccc-cCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhh
Q 010358 131 AYLG-RYWTIAIFTTIYLAGLTGITLCATMKV-FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 208 (512)
Q Consensus 131 ~~~G-R~~~i~~~~~l~~ig~~~l~~~~~~~~-l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~ 208 (512)
++ | ||++..++.++..++++...+....+. ..+. ++ . ...- +|........++...++|+..+.....-
T Consensus 331 ~~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~----~~-~--~~~~-~~~~~~~~~~l~~~~~~Gi~~A~~~siP 401 (477)
T TIGR01301 331 GW-GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYY----DG-D--GESL-PPPTGIKASALIVFAILGIPLAITYSIP 401 (477)
T ss_pred Hh-ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccc----cc-c--cccc-CcchhhHHHHHHHHHHhhHHHHHHHHHh
Confidence 87 8 477778888888888777764321100 0000 00 0 0000 1111123455566678889899999999
Q ss_pred hhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccc--hHHHHHHHHHHHHHHHHHHHhhccc
Q 010358 209 SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPL 282 (512)
Q Consensus 209 ~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~g--w~~~f~i~~~~~~i~~i~~~~~~~~ 282 (512)
.+++++..+++.. +.|..+++++.++.+...+..+..|.+.+..| -.+.+.+.++.++++.+..+...|+
T Consensus 402 fal~s~~~~~~~~----~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 402 FALASIRSSNLGA----GQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HHHHHHHccccCC----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999885442 26999999999999999998887777655554 4567778888877777666554443
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00012 Score=57.49 Aligned_cols=68 Identities=18% Similarity=-0.010 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 010358 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (512)
Q Consensus 76 ~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l 145 (512)
...++...+...+.++++.|+++ .|++..+.+.+.++......++++++|+++||+ ||++.++....+
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~ 74 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence 34444555555677899999985 899999999999999999999999999999998 988877766544
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00011 Score=77.03 Aligned_cols=165 Identities=8% Similarity=-0.091 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhccc
Q 010358 81 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160 (512)
Q Consensus 81 ~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~ 160 (512)
..++.-.+.+++--++ ++.+..+...+.+...-..+-.+.-++.++|-.++ |+-+++.++++...+=.+.+...
T Consensus 383 mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L---- 456 (618)
T KOG3762|consen 383 MGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYL---- 456 (618)
T ss_pred HHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHh----
Confidence 3333333444544444 44555555555444444455667778889999998 99999999998888766666665
Q ss_pred ccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHH-HHH
Q 010358 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVT 239 (512)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~-~~~ 239 (512)
.|.+..+..-++.|+-.+.++.++.+++++..|++- +.++.++... .-.
T Consensus 457 ------------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~G 506 (618)
T KOG3762|consen 457 ------------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHG 506 (618)
T ss_pred ------------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcc
Confidence 577778888899999999999999999999999887 7777777443 346
Q ss_pred HHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 010358 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (512)
Q Consensus 240 lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~ 281 (512)
+|-.+|.+++|.+.+.+|=+..|.+.+++.++.++++....+
T Consensus 507 lG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~ 548 (618)
T KOG3762|consen 507 LGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQL 548 (618)
T ss_pred cCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 788888899999999999888898888888777777665443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00052 Score=74.22 Aligned_cols=144 Identities=12% Similarity=-0.000 Sum_probs=80.5
Q ss_pred ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 010358 67 GWIAALFIFGNEMAERMAY-FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (512)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~-~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l 145 (512)
.++.....++...+..+.. ..+..+.+.. -+..+.+... .....+......++..++.++-||+ |||+.++.+.+.
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~i-f~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~ 368 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTI-FKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG 368 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCceEEeehHHH-HHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence 4444444444444444433 3333444444 4455555332 4444445566667777789999998 999999999999
Q ss_pred HHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhh
Q 010358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (512)
Q Consensus 146 ~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (512)
+.++.++++........... + ........+....+.+.....+..+....+.+|.||.+-
T Consensus 369 m~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~----- 428 (513)
T KOG0254|consen 369 MSICLVILAVVGVFALYYPN---S------------SKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL----- 428 (513)
T ss_pred HHHHHHHHHHHHHHhccCCC---c------------ccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH-----
Confidence 99999888876332111100 0 000111112222222222333334455567899999887
Q ss_pred hhhhHHHHH
Q 010358 226 HLDRFFNFF 234 (512)
Q Consensus 226 ~r~~~~~~~ 234 (512)
|+.+.++-
T Consensus 429 -r~~~~s~~ 436 (513)
T KOG0254|consen 429 -RSKGASLA 436 (513)
T ss_pred -HhhhHHHH
Confidence 77776663
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.001 Score=73.70 Aligned_cols=82 Identities=9% Similarity=0.076 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHH-HHHHHHHHHHHHHhhccc--hHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLG--RYWTIAIFTTIY 146 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~-~~~l~~l~~G~LsD~~~G--R~~~i~~~~~l~ 146 (512)
.++...+..++....++++.+++|.|+++.+|++..+++.+.....+ +..++.+++|+++||+ + .++++.++.++.
T Consensus 331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~~ 409 (633)
T TIGR00805 331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICLS 409 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHHH
Confidence 56777788888999999999999999999999999999988887665 5688999999999997 7 456777776666
Q ss_pred HHHHHH
Q 010358 147 LAGLTG 152 (512)
Q Consensus 147 ~ig~~~ 152 (512)
+++.++
T Consensus 410 ~~~~~~ 415 (633)
T TIGR00805 410 TLSYLL 415 (633)
T ss_pred HHHHHH
Confidence 665444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=6.3e-05 Score=77.47 Aligned_cols=179 Identities=15% Similarity=0.034 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHH--------HHHHHHHHHH-HHHHHHHHHHhhccchHHHH
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN--------AVNNFLGISQ-ASSVLGGFLADAYLGRYWTI 139 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~--------~~~~~~~~~~-l~~l~~G~LsD~~~GR~~~i 139 (512)
+..+...+.-|...+++|+...+...-+ +..++.+.+... ...+.....+ .+..++..+.|++ ||++.-
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~-~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIF-SAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHH-HhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence 5566667777888888888776644443 345554433322 1112222222 2666777789997 999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHH-HHHHHhhcChhhhhhhHhhccCCC
Q 010358 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDE 218 (512)
Q Consensus 140 ~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~-~l~g~g~g~~~~~~~~~~ad~f~~ 218 (512)
+.+.+++.+..+.++..-. + . .+...+++.- +..-++.-+..+.....-+|.||.
T Consensus 382 ~~GF~~~~i~~~~~~~~y~--~--~--------------------~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa 437 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYN--Q--L--------------------ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA 437 (538)
T ss_pred HhhHHHHHHHHHHHcCCcc--c--c--------------------cccCceeehHHHHHHHHhcCCCceeEEeehhhchH
Confidence 9999998887777766411 0 0 1111111111 122234445555566667899999
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhh-----ccchHHHHHHHHHHHHHHHHHHHhh
Q 010358 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----EHGWGSAFGALAIAMGISNMLFFIG 279 (512)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~-----~~gw~~~f~i~~~~~~i~~i~~~~~ 279 (512)
+. |+.+.++...+.-.|++++...-.++.+ ..|.++.|++.++++.++.++.++.
T Consensus 438 rv------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~ 497 (538)
T KOG0252|consen 438 RV------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI 497 (538)
T ss_pred HH------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence 88 9999999999999999999999999999 7889999999999888877766553
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00051 Score=74.83 Aligned_cols=178 Identities=12% Similarity=0.045 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhc-CCChhH--HHHHHHHHHHHHHHHHHHHHHHHhhccchHH--------
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVM-HKSFAD--SSNAVNNFLGISQASSVLGGFLADAYLGRYW-------- 137 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l-~~s~~~--a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~-------- 137 (512)
..+|+++...+|..-+-..+..| .-++-+.+ |.+..+ ..+.++.+.+.+++|.+.+|+++ .+.-||+
T Consensus 353 ~d~Wll~~~~~cg~g~gl~~~~N-~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt 430 (591)
T PTZ00207 353 ARLWCLLWSIFCCVGAHFVIIFN-ARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPIT 430 (591)
T ss_pred hhHHHHHHHHHHhhCchheeeec-HHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchh
Confidence 36777777777766555444445 55666677 763322 33378999999999999999998 3323333
Q ss_pred -HHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccC
Q 010358 138 -TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 216 (512)
Q Consensus 138 -~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f 216 (512)
.+.+..+ +.++.+++++. .....++++-+++|++.|...+.......|+|
T Consensus 431 ~~l~~~~~-~~~~~lll~~~----------------------------~p~~~L~~~~~lvg~~~G~~~~~~~~i~selF 481 (591)
T PTZ00207 431 IALFIPSV-CIITMLTLFLT----------------------------LPKAALPLPYFIAAFANGFMAATIALVTRTIF 481 (591)
T ss_pred HHHHHHHH-HHHHHHHHHHH----------------------------CCccHhHHHHHHHHHHhhHhHHHHHHHHHHHh
Confidence 2223333 55566666554 11146889999999999999999999999999
Q ss_pred CCCChhhhhhhhhHHHHHHHHHHHHHHHH-hHHHHhhhhc-------------cchHHHHHHHHHHHHHHHHHHHhhccc
Q 010358 217 DERSKDYKTHLDRFFNFFYLSVTVGAIVA-FTLVVYIQME-------------HGWGSAFGALAIAMGISNMLFFIGTPL 282 (512)
Q Consensus 217 ~~~~~~~~~~r~~~~~~~~~~~~lg~~l~-p~i~~~l~~~-------------~gw~~~f~i~~~~~~i~~i~~~~~~~~ 282 (512)
. ++ -+.-+|+...+.-+|+.+- -.+.|.+.|. .-++..|.+.++..++++++.+...-+
T Consensus 482 g-k~------~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R 554 (591)
T PTZ00207 482 A-KD------PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQ 554 (591)
T ss_pred c-cc------hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeee
Confidence 9 77 7888998888888888765 4566766542 127889998888887777776655544
Q ss_pred cc
Q 010358 283 YR 284 (512)
Q Consensus 283 ~~ 284 (512)
+|
T Consensus 555 ~r 556 (591)
T PTZ00207 555 YR 556 (591)
T ss_pred hH
Confidence 43
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.025 Score=62.81 Aligned_cols=249 Identities=12% Similarity=-0.026 Sum_probs=164.4
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCC
Q 010358 100 MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 179 (512)
Q Consensus 100 l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c 179 (512)
.+...........++....++.+++....+|..-|+...+..-.+..+++.+.+.+.+.. .. |
T Consensus 15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~-a~-~--------------- 77 (654)
T TIGR00926 15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFG-AI-P--------------- 77 (654)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc-cC-c---------------
Confidence 344445667888999999999999999999998777888888888888877777766431 11 1
Q ss_pred CCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccc-h
Q 010358 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-W 258 (512)
Q Consensus 180 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~g-w 258 (512)
.........+..+.+.++.++..++-+.+.+++.+.-+ ...+.+..++|++..+.+.+ |.+++..+..... +
T Consensus 78 ---~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~ 150 (654)
T TIGR00926 78 ---SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINA-GSLISTIITPILRGD 150 (654)
T ss_pred ---ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 01233445567777888999999999999999998754 25556799999999998887 5666666655433 3
Q ss_pred HH------HHH-HHHHHHHHHHHHHHhhcccccccCCCCCchHHHHHHHHHHHhhhccccCCcccccccccCCCcccccC
Q 010358 259 GS------AFG-ALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKG 331 (512)
Q Consensus 259 ~~------~f~-i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (512)
.. ++. ..++.+++.++.++.....++..++.+.+...+.+++..+...++.+ .
T Consensus 151 ~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~------~-------------- 210 (654)
T TIGR00926 151 VGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKR------F-------------- 210 (654)
T ss_pred hcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHh------h--------------
Confidence 22 233 44555566666666666666666665544444555544443322110 0
Q ss_pred CcccccCCccchhhHHHhhhccccCCCCCcccc--cchhHHHHHHHHhhcchhhhhHHHHHHhhccchHHHHHHhhhccc
Q 010358 332 SGKIAHTDDFRCLDKAALELKEDVINPSPWKLC--TVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH 409 (512)
Q Consensus 332 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~w~~~--~~~~ve~~k~~~~~l~v~~~~~~~~~~~~q~~t~~~~q~~~~~~~ 409 (512)
+..+. .....|-.+ ....+++++.+.+++.++...+.++..+.+.......+..++++.
T Consensus 211 ----------~~~~~---------~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m 271 (654)
T TIGR00926 211 ----------STRSE---------HWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRM 271 (654)
T ss_pred ----------ccCCc---------ccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHh
Confidence 00000 000122222 333346688999999999999999999999888788888888765
Q ss_pred cc
Q 010358 410 MG 411 (512)
Q Consensus 410 ~~ 411 (512)
.+
T Consensus 272 ~~ 273 (654)
T TIGR00926 272 DG 273 (654)
T ss_pred cC
Confidence 43
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0043 Score=55.72 Aligned_cols=105 Identities=15% Similarity=0.223 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHH
Q 010358 110 AVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLY 189 (512)
Q Consensus 110 ~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~ 189 (512)
-.++..+...+..++...+-+++ |.|+++.++.+.+.+-...... .+...
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~-----------------------------~~~~~ 91 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY-----------------------------PNSYT 91 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh-----------------------------hhHHH
Confidence 34444455566667777888886 9999999999988765444332 35567
Q ss_pred HHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHH
Q 010358 190 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (512)
Q Consensus 190 l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~ 250 (512)
++.+-.+.|+|.+..+.....++.+..++++ +++..+++......+.++|.++.-
T Consensus 92 l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 92 LYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999988776655 677777766666666666655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0025 Score=69.24 Aligned_cols=154 Identities=12% Similarity=0.049 Sum_probs=105.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChh---HHHHHHHHHHHHHHHHHHHHHHHHhhccchHH-HHHH
Q 010358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAI 141 (512)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~---~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~-~i~~ 141 (512)
+.+|.+...+++.++..+.||++..+.|......++-+.. ..+.....+..+..++.++.|++.-++ ||.| .+++
T Consensus 307 ~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~ 385 (599)
T PF06609_consen 307 KDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLIF 385 (599)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHHH
Confidence 3456777777888888888999888888888887776653 456666667777778888889998876 7755 4456
Q ss_pred HHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCCh
Q 010358 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (512)
Q Consensus 142 ~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~ 221 (512)
+.++++++..+++... | .|....+...++.|+|.|+..........-..|+++
T Consensus 386 ~~~~~ta~~Gama~~~------~--------------------~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~- 438 (599)
T PF06609_consen 386 GSVLMTAFCGAMAAVR------P--------------------DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED- 438 (599)
T ss_pred HHHHHHHHHHHHHHcc------C--------------------CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH-
Confidence 7666666655555431 1 122233455677888888766555554444456555
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhHHHHhh
Q 010358 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (512)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l 252 (512)
.+...++....-.+|+.+|..+-.-+
T Consensus 439 -----ig~a~gL~~s~R~~GGsIg~aIy~~I 464 (599)
T PF06609_consen 439 -----IGTATGLTGSIRSIGGSIGYAIYNAI 464 (599)
T ss_pred -----HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88888888888888888877665443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.011 Score=63.35 Aligned_cols=159 Identities=10% Similarity=-0.084 Sum_probs=97.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhc-----CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchH-H---
Q 010358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM-----HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY-W--- 137 (512)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l-----~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~-~--- 137 (512)
|...+..+++...+.-..|.-..+.+..|..+.. |++- .+++..+.-.+...+..|+.+++=.|. +|+ +
T Consensus 266 r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~i-p~~~~qslNp~~ii~l~P~~a~lw~~l-~~~~~~~s 343 (493)
T PRK15462 266 ELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTV-PTAMFQSINAFAVMLCGVFLAWVVKES-VAGNRTVR 343 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceee-CHHHHHhHhHHHHHHHHHHHHHHHHHH-hcCCCCCC
Confidence 3334444444444444444445555666665542 3221 233444444444444455555564443 321 1
Q ss_pred ---HHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhc
Q 010358 138 ---TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGAD 214 (512)
Q Consensus 138 ---~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad 214 (512)
=+.+++++..++.+.+.+...... + ....+..++++..++.++|.-...|...+++++
T Consensus 344 ~~~Kfa~g~~~~g~~f~~l~~~~~~~~--~-----------------~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~ 404 (493)
T PRK15462 344 IWGKFALGLGLMSAGFCILTLSARWSA--M-----------------YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITR 404 (493)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhcC--C-----------------CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHH
Confidence 256778878888777766532110 0 001456778888889999999999999999999
Q ss_pred cCCCCChhhhhhhhhHHHHHHHH-HHHHHHHHhHHHHhh
Q 010358 215 QFDERSKDYKTHLDRFFNFFYLS-VTVGAIVAFTLVVYI 252 (512)
Q Consensus 215 ~f~~~~~~~~~~r~~~~~~~~~~-~~lg~~l~p~i~~~l 252 (512)
..|++- ++..++.+++. ..+|..++..+++..
T Consensus 405 laP~~~------~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 405 IEIPGV------TGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred hChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999888 99999998774 367777776666655
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.33 Score=51.06 Aligned_cols=192 Identities=9% Similarity=-0.123 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 010358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (512)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~ 150 (512)
.+.+....++.+++--..-...+.|+.+.+.-+..-.+..-..-.+...++.+..|..-||. -|.+++..+.++--+..
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv 82 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSV 82 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHH
Confidence 34555566666666555555577888877655544444443444455666667778889998 89998888766544433
Q ss_pred HHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhH
Q 010358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (512)
Q Consensus 151 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~ 230 (512)
.+.......-...+. .... ........+.+...+.++.--.......+.=-|+...=..++...+...
T Consensus 83 ~~s~~~~~~l~~~~~-----------~~~~-~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~ 150 (432)
T PF06963_consen 83 AASCALFLLLLSYPS-----------SSSQ-SSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARM 150 (432)
T ss_pred HHHHHHHHHHHhCCc-----------cccc-cchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHH
Confidence 222221110000000 0000 0001112222222222222222222222333344321111111123343
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHH
Q 010358 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (512)
Q Consensus 231 ~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~ 275 (512)
-+...=.=-+--+++|++.|.+....|...+.++.++..+++.++
T Consensus 151 NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 151 NATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 333333334567899999999988888888877777776666654
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.054 Score=57.58 Aligned_cols=166 Identities=12% Similarity=0.066 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCCh-----hHHHHHHHHHHHHHH-HHHHHHHHHHhhccchHHHHHH
Q 010358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF-----ADSSNAVNNFLGISQ-ASSVLGGFLADAYLGRYWTIAI 141 (512)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~-----~~a~~~~~~~~~~~~-l~~l~~G~LsD~~~GR~~~i~~ 141 (512)
++.++...+.-|+-.+.|+.+.+ +++.+..+. .....+-+....... +..++.+++++|+ +|++.+.+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~ 79 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence 45666677777777777765544 366666632 223333333333333 3377889999998 99998888
Q ss_pred HHHHHHHHHHHHhhhhcc--cccCCCCCcccccccccCCCCCcch---------hhHHHHHHHHHHHHHhhcChhh-hhh
Q 010358 142 FTTIYLAGLTGITLCATM--KVFMPNQDNCDRISQLLGSCEPAKS---------WQMLYLYTVLYITGFGAAGIRP-CVS 209 (512)
Q Consensus 142 ~~~l~~ig~~~l~~~~~~--~~l~~~~~~~~~~~~~~~~c~~~~~---------~~~~~l~~~~~l~g~g~g~~~~-~~~ 209 (512)
....+.+...++++.... ..++|+ ..|++. ..-.++.- .....+++ ...+-.....+ ...
T Consensus 80 ~~~~F~~~f~lF~~vl~p~~~~~~p~-~~~~~~----~~~~~~~~~~~i~~~~~W~~~~FYv---~~elw~~~vvS~lFW 151 (472)
T TIGR00769 80 VISPFLGFFALFAFVIYPLSDLLHPT-ALADKL----LSLLPPGFMGFIAILRIWSFALFYV---MAELWGSVVLSLLFW 151 (472)
T ss_pred HHHHHHHHHHHHHHHHhcchhhcCCc-HHHHHH----HhhcchhhHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHH
Confidence 776666655555544220 112221 011100 00000000 01111111 12222233333 567
Q ss_pred hHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhh
Q 010358 210 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (512)
Q Consensus 210 ~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~ 253 (512)
++..|.+..++ -.++++++..+.|+|..+++.+..++.
T Consensus 152 ~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 152 GFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999877 789999999999999999999998876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.044 Score=59.24 Aligned_cols=156 Identities=12% Similarity=0.106 Sum_probs=86.0
Q ss_pred HHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH-HHHHHHHH-HHHHHhhhhcccccCCCCC
Q 010358 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTIYLA-GLTGITLCATMKVFMPNQD 167 (512)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~-~~~~l~~i-g~~~l~~~~~~~~l~~~~~ 167 (512)
....-.+...+|-+....+.+++++.++..+|..++|+++++. -|+.... +...+... ...++... . +. .
T Consensus 35 v~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~~ll~~~-~-~~--~--- 106 (521)
T PRK03612 35 LLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSALILYAA-F-AF--Q--- 106 (521)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHH-H-HH--H---
Confidence 3345555666888888889999999999999999999887553 2222211 11111111 11111111 0 00 0
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhH
Q 010358 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (512)
Q Consensus 168 ~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~ 247 (512)
......++...++.++..|+..|....+..+... ++ -++..+-.|....+|+++|.+
T Consensus 107 ----------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~ntlGa~~G~l 163 (521)
T PRK03612 107 ----------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAADYLGALVGGL 163 (521)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHHhHHHHHHHH
Confidence 0111222333455667777777776666644322 12 345566777888889999988
Q ss_pred HHHhhhh-ccch-HHHHHHHHHHHHHHHHHH
Q 010358 248 LVVYIQM-EHGW-GSAFGALAIAMGISNMLF 276 (512)
Q Consensus 248 i~~~l~~-~~gw-~~~f~i~~~~~~i~~i~~ 276 (512)
+.+++.- ..|- +..+.+..+..+++++++
T Consensus 164 ~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~ 194 (521)
T PRK03612 164 AFPFLLLPRLGLIRTAALTGSLNLLAALVFL 194 (521)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 8887643 5664 444444443334443333
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.011 Score=59.92 Aligned_cols=152 Identities=14% Similarity=0.087 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHH-HHHHH
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI-FTTIY 146 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl-~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~-~~~l~ 146 (512)
..++.++....+.....|....+.+.++ .+.+++++.+.+-+.+.-...+.+.++.-+...|+..|.-+..+. ++.++
T Consensus 260 i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~ 339 (451)
T KOG2615|consen 260 ISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLI 339 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHH
Confidence 3566666655555555556666666666 678999999999888877777777788778888887554443333 33333
Q ss_pred HHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 147 ~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
.-..+++... .....++++..+..+..+...+++..++....|.+.
T Consensus 340 vP~~llls~~----------------------------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------ 385 (451)
T KOG2615|consen 340 VPAFLLLSLA----------------------------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------ 385 (451)
T ss_pred HHHHHHHhcc----------------------------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------
Confidence 3233333333 334678888889999989999999999999999887
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHhhhh
Q 010358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (512)
Q Consensus 227 r~~~~~~~~~~~~lg~~l~p~i~~~l~~ 254 (512)
|+...++......++-++||.++|.+..
T Consensus 386 rG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 386 RGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred chHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 9999999999999999999999987754
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.031 Score=60.41 Aligned_cols=146 Identities=12% Similarity=0.088 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~i 148 (512)
+..+.+.+..+...+.+|++.-+ ...+|.+.......... .........+.+-|++ |||.....+.++..+
T Consensus 322 ~~~~~~~~~~~~~~~~y~gl~~~-----~~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~ 392 (521)
T KOG0255|consen 322 YRTLYLLFIWFVFSLVYYGLSLN-----VSGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGI 392 (521)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhh-----hhhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 34444444444455555544333 33455444333322222 3344445557899997 999999999999888
Q ss_pred HHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhh
Q 010358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (512)
Q Consensus 149 g~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (512)
+.++.+..... .......+...+..++.+........+.+|++|+.. |.
T Consensus 393 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~------r~ 441 (521)
T KOG0255|consen 393 GLLLFGWLPDD-------------------------LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV------RN 441 (521)
T ss_pred HHHHHHHhhcc-------------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HH
Confidence 88888776210 111122222233334444455566888899999887 99
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhh
Q 010358 229 RFFNFFYLSVTVGAIVAFTLVVYIQM 254 (512)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~l~~ 254 (512)
.+.+.......+|++++|.+......
T Consensus 442 ~~~~~~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 442 TAVGAISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999988765544
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00092 Score=69.03 Aligned_cols=163 Identities=13% Similarity=0.060 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchHHHHH-HHHH
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIA-IFTT 144 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~---~GR~~~i~-~~~~ 144 (512)
+.++.+..+.+...+++-.=.+++++|+. .+|.+..-.+.+-...-+...+.+++.|..|||. +||||-++ .+.+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 45555555555555655444567788875 5788877777666666677888899999999984 48777555 4555
Q ss_pred HHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCc----chhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCC
Q 010358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA----KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (512)
Q Consensus 145 l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~----~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~ 220 (512)
+.+++.+++..+.-+- +..|+.+ .......++++..+.=+..-..+...-++.+|+...++
T Consensus 111 ~i~~~l~Lig~aaDig---------------~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~ 175 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIG---------------LLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA 175 (498)
T ss_pred HHHHHHhhhhhHhhhh---------------HHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh
Confidence 5666666665542211 1112222 22456677777777778877888899999999998766
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhh
Q 010358 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (512)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l 252 (512)
.+ .++.+++.+...+|+.+|...++|.
T Consensus 176 ~~-----~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 176 KK-----TRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred hh-----hccchhHHHHHHhcceeeeeccccc
Confidence 22 1288888999999999888777654
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.28 Score=50.91 Aligned_cols=129 Identities=8% Similarity=0.007 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHH
Q 010358 111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL 190 (512)
Q Consensus 111 ~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l 190 (512)
+.+-.+-..+.-++.-+..+|+ --..=+.+..++.++|+++.+++ .+...-
T Consensus 65 lladi~P~l~~Kl~aP~fi~~v-~y~~Ri~~~~~l~~~g~l~va~~----------------------------~~v~~~ 115 (402)
T PF02487_consen 65 LLADILPSLLVKLIAPFFIHRV-PYWIRILICVALSAAGMLLVAFS----------------------------PSVWVR 115 (402)
T ss_pred HHHHHHHHHHHHHHhHhhhhhc-cchHHHHHHHHHHHHHHhheeec----------------------------cchhHH
Confidence 3333344445555666677775 42222344445666777777765 455666
Q ss_pred HHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhh-ccchHHHHHHHHHHH
Q 010358 191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAM 269 (512)
Q Consensus 191 ~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~-~~gw~~~f~i~~~~~ 269 (512)
+++..+.+++.|......-++.+ .+++. ..+.|..+...++++|+..-..+.. ..+-|..+.+...+.
T Consensus 116 l~Gv~las~ssg~GE~tfL~lt~-~y~~~----------~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp 184 (402)
T PF02487_consen 116 LLGVVLASLSSGLGEVTFLSLTH-FYGKS----------SLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLP 184 (402)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHH-hcCcc----------ccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 77888888888877666666543 44432 2344455555666666654444444 233466666666555
Q ss_pred HHHHHHHHhh
Q 010358 270 GISNMLFFIG 279 (512)
Q Consensus 270 ~i~~i~~~~~ 279 (512)
++.++.+++.
T Consensus 185 ~~~~~~~f~~ 194 (402)
T PF02487_consen 185 AIFLLSYFFL 194 (402)
T ss_pred HHHHHHHHHh
Confidence 4444444443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.004 Score=64.39 Aligned_cols=183 Identities=13% Similarity=0.072 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHH
Q 010358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTIAIFTTIYLAG 149 (512)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR-~~~i~~~~~l~~ig 149 (512)
+.++.....+....||++.+.+-.- ...-|++...+|.+.....++.+++.++.|.++||. .. |.++++......++
T Consensus 268 F~il~~~ygi~~g~F~~l~~~l~~~-l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 268 FIILAICYGIGLGLFNSLSTLLNLA-LCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFALVG 345 (480)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhc-cccccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHH
Confidence 3444444445555555555443322 235677778889999999999999999999999998 54 44555555555555
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhcc-CCCCChhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ-FDERSKDYKTHLD 228 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~-f~~~~~~~~~~r~ 228 (512)
...+....+ .+ .....++....+.|+...+..|...-+..|. +|..| +
T Consensus 346 ~~~l~~~t~----~~--------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------~ 394 (480)
T KOG2563|consen 346 TLMLLTCTL----FL--------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------G 394 (480)
T ss_pred HHHHHHhhc----cC--------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------c
Confidence 322222111 11 1234555666677777777788777777665 45443 3
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhccc---hHH-HHHHHHHHHHHHHHHHHhhccccccc
Q 010358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGS-AFGALAIAMGISNMLFFIGTPLYRHR 286 (512)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~l~~~~g---w~~-~f~i~~~~~~i~~i~~~~~~~~~~~~ 286 (512)
...|..+....+.+++-.++.+...+..+ |.+ .-+.......+.+++..+.++.|+..
T Consensus 395 tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~ 456 (480)
T KOG2563|consen 395 TSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL 456 (480)
T ss_pred ccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence 34455555666666666666677666655 333 22333333444444555556555543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.066 Score=55.58 Aligned_cols=156 Identities=8% Similarity=-0.015 Sum_probs=97.5
Q ss_pred HHHHHHHhhHh-cCCChhHHH-HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCC
Q 010358 89 SVNMVTFMFYV-MHKSFADSS-NAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (512)
Q Consensus 89 ~~~l~~yl~~~-l~~s~~~a~-~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~ 166 (512)
-+++..|++++ .|++..+.. -+.-.+.-.....-++...++|.. |-|++++++.+..++...++...
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~---------- 91 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFG---------- 91 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHH----------
Confidence 46789999997 999988876 455555666666777789999976 88888888888777766665554
Q ss_pred CcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHh
Q 010358 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (512)
Q Consensus 167 ~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p 246 (512)
.+...+-+..++.|++.+. .....+++=-..|+++ -.+..++...+.-+|-.++.
T Consensus 92 ------------------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~ 146 (412)
T PF01770_consen 92 ------------------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISS 146 (412)
T ss_pred ------------------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777776654 2233333333334333 22233333334444444444
Q ss_pred HHHHhhh--hccchHHHHHHHHHHHHHHHHHHHhhc
Q 010358 247 TLVVYIQ--MEHGWGSAFGALAIAMGISNMLFFIGT 280 (512)
Q Consensus 247 ~i~~~l~--~~~gw~~~f~i~~~~~~i~~i~~~~~~ 280 (512)
.++-.+. +..++...+.+......+++++.++..
T Consensus 147 ~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP 182 (412)
T PF01770_consen 147 LLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLP 182 (412)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4443333 345577777777777777777665543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.012 Score=62.36 Aligned_cols=129 Identities=12% Similarity=0.040 Sum_probs=105.7
Q ss_pred HHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCccc
Q 010358 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (512)
Q Consensus 91 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~ 170 (512)
.+..|+...++++..+.+...+.......++.++...+--+.+|-++++.+|++...+...+.+++
T Consensus 263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-------------- 328 (463)
T KOG2816|consen 263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-------------- 328 (463)
T ss_pred EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh--------------
Confidence 456788889999999999999999998999998888444444599999999999999999999887
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHH
Q 010358 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (512)
Q Consensus 171 ~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~ 250 (512)
++.+..+.+..+.+ ..+...+...++.+-+.+.++ ++..+++....-.+.++++|.+-+
T Consensus 329 --------------~~~w~~~~~~v~~~-~~~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~~~~~~~~~ 387 (463)
T KOG2816|consen 329 --------------TETWMMFAAGVVVA-LAGIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSGVVSPALYG 387 (463)
T ss_pred --------------ccchhhhHHHHHHH-hhcchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhhhhhHHHHH
Confidence 45566666664444 445678889999999999888 999999999999999999998887
Q ss_pred hhhh
Q 010358 251 YIQM 254 (512)
Q Consensus 251 ~l~~ 254 (512)
.+..
T Consensus 388 ~i~~ 391 (463)
T KOG2816|consen 388 NIFA 391 (463)
T ss_pred HHHH
Confidence 6643
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0003 Score=76.23 Aligned_cols=181 Identities=9% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHH-HHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAY-LGRYWTIAIFTTIYL 147 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~-~~~l~~l~~G~LsD~~-~GR~~~i~~~~~l~~ 147 (512)
.+..+.+...++.+...++.+++|-|+..+|+.+..+++++.....+ +..++.++||++..|+ ++.|.++.+..+..+
T Consensus 306 ~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~ 385 (539)
T PF03137_consen 306 VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSI 385 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHH
Confidence 56667778888888888999999999999999999999988876554 7789999999999987 234555555444444
Q ss_pred HHHHHHhhhhcc-----------cccC---C------CCCccccccc------ccCCCCCcchhhHHHHHHHHHHHHHhh
Q 010358 148 AGLTGITLCATM-----------KVFM---P------NQDNCDRISQ------LLGSCEPAKSWQMLYLYTVLYITGFGA 201 (512)
Q Consensus 148 ig~~~l~~~~~~-----------~~l~---~------~~~~~~~~~~------~~~~c~~~~~~~~~~l~~~~~l~g~g~ 201 (512)
+..+.......+ .... . ....|+.... ....|+..-...+..+.+..++..+..
T Consensus 386 v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~ 465 (539)
T PF03137_consen 386 VSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFT 465 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHH
Confidence 433331111000 0000 0 0001111000 112244432234445555555555544
Q ss_pred cChhhhhhhHhhccCCCCChhhhhhhhhHHHH-HHHHHHHHHHHHhHHHHhhhhcc
Q 010358 202 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEH 256 (512)
Q Consensus 202 g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~-~~~~~~lg~~l~p~i~~~l~~~~ 256 (512)
+..........-...++++ |..+.++ +-+.-.+|.+-||++-|++.|..
T Consensus 466 ~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 466 FMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp --------------------------------------------------------
T ss_pred HhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 5444444455557888877 8999998 44555678899999999998864
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.025 Score=62.42 Aligned_cols=76 Identities=11% Similarity=0.125 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHH-HHHHHHHHHHHHHHHhhc-cchHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAY-LGRYWTIAIFTTI 145 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~-~~~~~l~~l~~G~LsD~~-~GR~~~i~~~~~l 145 (512)
.+....+...++.+.+.+..+++|-||.+.++.+...|..+...+ ..+..+|.++||++.-|+ +.-|.+..+..+.
T Consensus 393 if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~ 470 (735)
T KOG3626|consen 393 IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVC 470 (735)
T ss_pred hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHH
Confidence 566778889999999999999999999999999999999888554 456778999999998886 2334444443333
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.042 Score=43.82 Aligned_cols=72 Identities=11% Similarity=0.003 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhh
Q 010358 80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (512)
Q Consensus 80 ~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~ 156 (512)
+.||+| +.+.+.+.++.++|..+++.+.+.-..++.++.+...++.++. .+++.+..+.++..+.++.+++.
T Consensus 6 igRFay----TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 6 IGRFAY----TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred hHHHHH----HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 4567788899999999999999999999999999999999986 78888999999888888888775
|
Note that many members are hypothetical proteins. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.58 Score=47.82 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=90.7
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHh-----hccchHHH
Q 010358 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD-----AYLGRYWT 138 (512)
Q Consensus 64 ~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD-----~~~GR~~~ 138 (512)
.++..+.+..+++..+...+-. |+... ++++-+.-|.|-++.+....++ .-+-.-++++++-| |+ ||||.
T Consensus 26 ~~~d~~~illLl~LYllQGiP~-GL~~~-iP~lL~ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~-Grrks 100 (510)
T KOG3574|consen 26 LKGDRSSILLLLFLYLLQGIPL-GLIGA-IPLLLQAKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRF-GRRKS 100 (510)
T ss_pred hhhhhhhHHHHHHHHHHcCCch-hHhhh-hHHHhcCCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhh-ccccc
Confidence 3444557777888888877766 67664 4455455666665544332222 22344578889999 76 99998
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCC
Q 010358 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (512)
Q Consensus 139 i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~ 218 (512)
-++-.- +.+|.+++.++-..+.... ......+...+....+++-++.+..-...-+..-.+..+
T Consensus 101 Wvvp~q-~llG~~mllLs~~v~~~~g---------------~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~ 164 (510)
T KOG3574|consen 101 WVVPCQ-YLLGLFMLLLSYLVDRGLG---------------GNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSR 164 (510)
T ss_pred eeeehH-HHHHHHHHHHhhCCCcccc---------------cCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCH
Confidence 765432 3445555555522111100 000112333333344555566665555566666666666
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHhHHH
Q 010358 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (512)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~ 249 (512)
++ .+-+...-..+.+.|.+++..+-
T Consensus 165 e~------lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 165 EN------LGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred hh------cCchhHHHHHHHhhhHHhhccee
Confidence 66 67776667777788877776554
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0073 Score=58.33 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=67.1
Q ss_pred HHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCccc
Q 010358 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (512)
Q Consensus 91 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~ 170 (512)
..+.|+.+.+++...+.+.......+..++...+.|-|+|+. |||+.....++ -+++..+.-+
T Consensus 58 PYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtyci----tYiLsCiTKh------------ 120 (454)
T KOG4332|consen 58 PYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCI----TYILSCITKH------------ 120 (454)
T ss_pred ceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehH----HHHHHHHhhc------------
Confidence 446778888999999999887777778888888899999997 99997655444 3334444311
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhH
Q 010358 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSF 211 (512)
Q Consensus 171 ~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~ 211 (512)
..++-.+.++|.+-|+..+......-+.
T Consensus 121 -------------SpqYkVLmVGR~LGGiaTsLLFSaFEsW 148 (454)
T KOG4332|consen 121 -------------SPQYKVLMVGRVLGGIATSLLFSAFESW 148 (454)
T ss_pred -------------CCceEEEeehhhhhhHHHHHHHHHHHHH
Confidence 1456678899999999888776665554
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.05 E-value=1.4 Score=46.70 Aligned_cols=99 Identities=19% Similarity=0.273 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHH
Q 010358 111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL 190 (512)
Q Consensus 111 ~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l 190 (512)
..+-.....+..++++.+-|.+ |.|+.+.++...+.+..+.+.. .|-..+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~-----------------------------~N~y~~ 105 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLF-----------------------------PNSYYL 105 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHh-----------------------------cchHHH
Confidence 4455566677888999999987 9999999999988876666554 355778
Q ss_pred HHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 010358 191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (512)
Q Consensus 191 ~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~ 245 (512)
+.+-.++|+|.+..+.-...++++-..++. +.+..++.+.....+.++|
T Consensus 106 yfssallG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~G 154 (461)
T KOG3098|consen 106 YFSSALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIG 154 (461)
T ss_pred HHHHHHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhh
Confidence 888899999999999888888888777655 5555555444444444433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.23 Score=52.37 Aligned_cols=88 Identities=15% Similarity=0.215 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHh------hhhccch
Q 010358 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY------IQMEHGW 258 (512)
Q Consensus 185 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~------l~~~~gw 258 (512)
.+..+++.+.+++++|.=+..|...++++...|+.- .+..++.|.+....|..++..+.+. ..+....
T Consensus 392 ~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~ 465 (498)
T COG3104 392 VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIE 465 (498)
T ss_pred cCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhh
Confidence 577888899999999999999999999999999766 7888888888888888887777662 2233445
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 010358 259 GSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 259 ~~~f~i~~~~~~i~~i~~~~ 278 (512)
...|+..+...++..++.+.
T Consensus 466 ~~~F~~~g~v~i~~~~~~~~ 485 (498)
T COG3104 466 GRVFGTIGVVAIVIGILLLL 485 (498)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 55676666655444444333
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.092 Score=54.78 Aligned_cols=137 Identities=8% Similarity=-0.040 Sum_probs=74.2
Q ss_pred hHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccc
Q 010358 97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL---GRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (512)
Q Consensus 97 ~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~---GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~ 173 (512)
.+-.|.+..+......+...+..+|.++||.++|++- -|-.+..+..+....+........... +. .+
T Consensus 275 ~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~---~~--~~---- 345 (493)
T KOG1330|consen 275 YELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLF---PA--FT---- 345 (493)
T ss_pred HHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHH---Hh--hh----
Confidence 3334555555666677788899999999999999941 111233333333333222111110000 00 00
Q ss_pred cccCCCCCcchhhHHHHHHHHHHHHHhh-cChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHH-HHHHHHhHHHHh
Q 010358 174 QLLGSCEPAKSWQMLYLYTVLYITGFGA-AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT-VGAIVAFTLVVY 251 (512)
Q Consensus 174 ~~~~~c~~~~~~~~~~l~~~~~l~g~g~-g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~-lg~~l~p~i~~~ 251 (512)
.....+.+.++++|+-. -..++.......+..|++. |.+++++-+.... .|-.-+|.+.|.
T Consensus 346 -----------~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~------Rt~a~a~~~~~~h~fgd~~~p~ivGi 408 (493)
T KOG1330|consen 346 -----------SSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSR------RTTAYALDTVFEHIFGDAASPYIVGI 408 (493)
T ss_pred -----------hHHHHHHHHHHHHHHHHHhcccccccceeeEecCccc------ccHHHHHHHHHHHHhccCCCcceehh
Confidence 11122223333333322 2334445556678889888 9999999555554 455556668888
Q ss_pred hhhcc-chH
Q 010358 252 IQMEH-GWG 259 (512)
Q Consensus 252 l~~~~-gw~ 259 (512)
+.++. ||+
T Consensus 409 lsd~l~g~~ 417 (493)
T KOG1330|consen 409 LSDKLRGYK 417 (493)
T ss_pred HHHHhhCCC
Confidence 88763 565
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.064 Score=56.79 Aligned_cols=199 Identities=11% Similarity=0.089 Sum_probs=114.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHH--HHHHHHHHHHHHHhhccch---HHHHHH
Q 010358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG--ISQASSVLGGFLADAYLGR---YWTIAI 141 (512)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~--~~~l~~l~~G~LsD~~~GR---~~~i~~ 141 (512)
.|+..+.++...+...+.+..+-+-.+.+....++++..++....+.... +.....+...+..-+. |+ |+.+..
T Consensus 260 d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l-~~i~~r~~~~~ 338 (488)
T KOG2325|consen 260 DWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRL-GKIDKRRIILL 338 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHh-hhhccceeeee
Confidence 46677777777888888877766666777777788877766544333322 1122223333333343 33 444444
Q ss_pred HHHHHHHHHHHHhhh-hccc-ccCCCC---CcccccccccCCCCCcchhhHHHHHHHH-HHHHHhhcChhhhhhhHhhcc
Q 010358 142 FTTIYLAGLTGITLC-ATMK-VFMPNQ---DNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQ 215 (512)
Q Consensus 142 ~~~l~~ig~~~l~~~-~~~~-~l~~~~---~~~~~~~~~~~~c~~~~~~~~~~l~~~~-~l~g~g~g~~~~~~~~~~ad~ 215 (512)
+.++......+.... .... .+.+.. ..|+ +.+..-|......+...++++. ++.|.+.-.......++.+++
T Consensus 339 g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~--~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySki 416 (488)
T KOG2325|consen 339 GFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCD--FEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKI 416 (488)
T ss_pred hHHHHHHhhheeeeeccccccccccccccccCcC--cccchhhccCcccChhhheeehhheeccccccccchHHHHHHHH
Confidence 422222222111111 0000 111110 0121 1123347777777766666654 345565555667778888999
Q ss_pred CCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHH
Q 010358 216 FDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (512)
Q Consensus 216 f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i 274 (512)
..+++ .+...+++.....++..+||++...+....|.++...+.++..++...
T Consensus 417 Lgp~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~ 469 (488)
T KOG2325|consen 417 LGPRD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAA 469 (488)
T ss_pred hCCcc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHH
Confidence 99888 677777888888999999999999888888877666555554444333
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=94.53 E-value=1.7 Score=45.88 Aligned_cols=137 Identities=9% Similarity=-0.085 Sum_probs=97.4
Q ss_pred HHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCC
Q 010358 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (512)
Q Consensus 87 ~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~ 166 (512)
+.-..+..|+... |++....+..-+...+....+.++..++-.|+ |-.|+-+++.....+...+...+...+.. |
T Consensus 276 sf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~~-~-- 350 (432)
T PF06963_consen 276 SFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPGS-P-- 350 (432)
T ss_pred cCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCCC-C--
Confidence 3345578899877 99999999998988899999999999999998 99999888888776655554443221110 0
Q ss_pred CcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHh
Q 010358 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (512)
Q Consensus 167 ~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p 246 (512)
.+..+...++.+..+-=+|-=++--+..-++-|..|+++ |+...+.-+...++.-.+..
T Consensus 351 ---------------~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~ 409 (432)
T PF06963_consen 351 ---------------FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSF 409 (432)
T ss_pred ---------------chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHH
Confidence 012345555555555556666667777788888888777 99998886666676666555
Q ss_pred HHH
Q 010358 247 TLV 249 (512)
Q Consensus 247 ~i~ 249 (512)
.++
T Consensus 410 ~~~ 412 (432)
T PF06963_consen 410 VLT 412 (432)
T ss_pred HHH
Confidence 443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.97 E-value=3.8 Score=43.47 Aligned_cols=114 Identities=20% Similarity=0.148 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHHHhhhhcccc-cCCCCCcccccccccCCCCCcchhhHHHHHH
Q 010358 116 GISQASSVLGGFLADAY--LGRYWTIAIFTTIYLAGLTGITLCATMKV-FMPNQDNCDRISQLLGSCEPAKSWQMLYLYT 192 (512)
Q Consensus 116 ~~~~l~~l~~G~LsD~~--~GR~~~i~~~~~l~~ig~~~l~~~~~~~~-l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~ 192 (512)
.+..++.++.+.+++|. +||++++.++..+..++.++.-+....-. +.|. ..-......+.....+
T Consensus 290 ~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t-----------~~~~~~~~~~~~~~~i 358 (461)
T KOG3098|consen 290 LGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPT-----------DSPPLLFTPSYYLALI 358 (461)
T ss_pred HHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCC-----------cccccccccchhHHHH
Confidence 34445556666676553 38999999999998888777666522100 1111 0001111233445555
Q ss_pred HHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhH
Q 010358 193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (512)
Q Consensus 193 ~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~ 247 (512)
.-+++|++-+......+.++++.+|+ + |..+++++-+--.+++.++..
T Consensus 359 i~~l~G~~D~~~~t~~~~ii~~~~~~-~------~~~~fsi~kfyq~~~s~v~~f 406 (461)
T KOG3098|consen 359 IGFLLGFGDACFNTQRYVIIALLYPD-D------RAQAFSLFKFYQSVASCVAFF 406 (461)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhcC-c------hHHHHHHHHHHHHHHHHHHhh
Confidence 56788999999999999999999954 4 667777755555555554433
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.48 Score=49.22 Aligned_cols=63 Identities=8% Similarity=0.074 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhh
Q 010358 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (512)
Q Consensus 186 ~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~ 254 (512)
+.+..++..+..|+..|..+.+....+.+..++++ |...++...++-.+|..++..++-++..
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 56666677788999999999999999999888776 8899988888888888888777665543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.62 Score=45.40 Aligned_cols=85 Identities=9% Similarity=0.075 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHH
Q 010358 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 265 (512)
Q Consensus 186 ~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~ 265 (512)
+...-+++..++-...|.++|.+.-+=.+..|++. |.+.+||+....|+-.-++....--=....+-|..|.++
T Consensus 343 s~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~ic 416 (454)
T KOG4332|consen 343 SPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGIC 416 (454)
T ss_pred CchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhh
Confidence 33344566667777788899999988888888877 999999999998887665433211001124567889998
Q ss_pred HHHHHHHHHHH
Q 010358 266 AIAMGISNMLF 276 (512)
Q Consensus 266 ~~~~~i~~i~~ 276 (512)
.+.+.++.+..
T Consensus 417 S~~~~~a~i~~ 427 (454)
T KOG4332|consen 417 SAFLFVASILQ 427 (454)
T ss_pred HHHHHHHHHHH
Confidence 88877765543
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.97 E-value=1 Score=45.12 Aligned_cols=118 Identities=18% Similarity=0.109 Sum_probs=65.1
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Q 010358 62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (512)
Q Consensus 62 ~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~ 141 (512)
+..++..|.++.+....+....+|-+ ..++...+...+|.... +.+-. ......++.+.+-.+ +|-|+++.+
T Consensus 22 r~~~~~~knv~i~s~~fl~~f~a~~g-l~nlq~~vn~~lg~~sl--~~~y~----~l~~s~m~~~~~Ir~-~g~K~tm~l 93 (390)
T KOG3097|consen 22 RKRLGILKNVLILSIAFLLTFTAYLG-LQNLQTSVNYDLGTVSL--GALYL----SLIDSSMFMPLLIRF-LGTKWTMVL 93 (390)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHH-HHHHHHHHhcCcccchh--hhhhH----HHHHHHHHHHHHHHH-HhhHHHHHH
Confidence 33444455666655555555555543 45667766654443221 11111 122223333345554 599999988
Q ss_pred HHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccC
Q 010358 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 216 (512)
Q Consensus 142 ~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f 216 (512)
+...+... .++.+ . ..+..++.+-...|+|.+..+..-.+++++.-
T Consensus 94 av~~Y~ly-----iA~Nl---~---------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 94 AVFPYALY-----IAANL---E---------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred HHHHHHHH-----HHhhc---c---------------------hhHHhhccHHHhhccccccccccCcceecHHH
Confidence 87766543 22111 0 34555666677889999988888777776543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.076 Score=56.37 Aligned_cols=69 Identities=13% Similarity=0.098 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHHhh
Q 010358 85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF-TTIYLAGLTGITL 155 (512)
Q Consensus 85 ~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~-~~l~~ig~~~l~~ 155 (512)
+-.+.+.+++|.. .+|+++.+.+.++..--+..++.+|++|++|||+ -++|.++++ ++......+++.+
T Consensus 27 ~g~l~pll~vy~k-QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~-r~~r~lllgsl~~~v~a~fll~f 96 (618)
T KOG3762|consen 27 FGSLFPLLAVYFK-QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRY-RKRRPLLLGSLLLSVTATFLLVF 96 (618)
T ss_pred ccccchHHHHHHH-HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHheee
Confidence 3356778888876 5999999999999999999999999999999998 655555554 4444444444443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=91.20 E-value=22 Score=38.22 Aligned_cols=169 Identities=13% Similarity=0.067 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCCh---hHHHHHHHH-HHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF---ADSSNAVNN-FLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (512)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~---~~a~~~~~~-~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~ 143 (512)
++.++.+.++.++..+.|..+. -+++.+=.+. .....+=.. ..=...+..++-.++++++ +|.+++.+..
T Consensus 23 ~~k~~~l~~m~f~i~f~y~~lR-----~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~~ 96 (491)
T PF03219_consen 23 LKKFLPLALMFFFILFNYTILR-----DLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYIII 96 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 5566677777776666553222 2233222222 222222121 2224455667789999997 9999888777
Q ss_pred HHHHHHHHHHhhhhcc--cccCCCCCcccccccccCCCCCcchhh------HHHHHHHHHHHH-HhhcChhh-hhhhHhh
Q 010358 144 TIYLAGLTGITLCATM--KVFMPNQDNCDRISQLLGSCEPAKSWQ------MLYLYTVLYITG-FGAAGIRP-CVSSFGA 213 (512)
Q Consensus 144 ~l~~ig~~~l~~~~~~--~~l~~~~~~~~~~~~~~~~c~~~~~~~------~~~l~~~~~l~g-~g~g~~~~-~~~~~~a 213 (512)
..+.....++++.... ..++|+. .|++. ....++.-.. .+.+. ..++.+ +-.....+ .-..+..
T Consensus 97 ~~F~~fF~~f~~vlyP~~~~lhp~~-~~~~~----~~~~~~~~~~~i~~~~~Wt~s-lfYv~aElwgsvvlSlLFW~fAN 170 (491)
T PF03219_consen 97 IPFLGFFALFAFVLYPNRDILHPDA-FADKL----LAILPPGFKGFIAMFRNWTFS-LFYVMAELWGSVVLSLLFWGFAN 170 (491)
T ss_pred HHHHHHHHHHHHHHhhchhhcCCCH-HHHHh----hhhccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655555543221 1233320 11100 0001111000 01111 111111 21122222 3467788
Q ss_pred ccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhh
Q 010358 214 DQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (512)
Q Consensus 214 d~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~ 254 (512)
|.++.++ -.+++.++..+.|+|.+++..+..++.+
T Consensus 171 ~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 171 EITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred hcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777 7889999999999999999999988877
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=87.04 E-value=5 Score=42.48 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhH
Q 010358 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (512)
Q Consensus 186 ~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~ 247 (512)
+-+..++..++.|+..|-..+....+..+..++++ |..+-++..++.++|-.+|..
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~ 426 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAV 426 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 44566667888999998888888888888877544 555544555555555555543
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=86.12 E-value=52 Score=35.21 Aligned_cols=65 Identities=15% Similarity=0.096 Sum_probs=48.4
Q ss_pred cChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHH
Q 010358 202 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 271 (512)
Q Consensus 202 g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i 271 (512)
-......-..+.+++|++++ |..+++-+....++...+...+.+.+.+..||.....+.-+.+++
T Consensus 281 nlve~~~k~~v~~~~p~~~~-----~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 281 NLVEVTWKSKLKAQYPSPNE-----YSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34445555677888886543 899999999888888877777779999999999877665444444
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=86.06 E-value=3.6 Score=34.44 Aligned_cols=39 Identities=10% Similarity=0.200 Sum_probs=34.4
Q ss_pred HHHHhhcCccchhHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 010358 440 EFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 478 (512)
Q Consensus 440 e~~~~~~P~~~~~~~~g~~~~~~~ig~~l~~~l~~~v~~ 478 (512)
....+..|++.|+..+++......+|..+++.+.+.+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (141)
T TIGR00880 74 ALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ 112 (141)
T ss_pred HHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence 455688999999999999999999999999999887754
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.26 E-value=57 Score=34.87 Aligned_cols=169 Identities=11% Similarity=0.017 Sum_probs=95.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhH---HHHHHHHHHH-HHHHHHHHHHHHHhhccchHHHHHHH
Q 010358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD---SSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIAIF 142 (512)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~---a~~~~~~~~~-~~~l~~l~~G~LsD~~~GR~~~i~~~ 142 (512)
-++.++.+.+..+|-.+.++.+. -+.+.+..+... ...+-..... .+.+..++-+++.+++ -|.+++.+.
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~lR-----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~ 98 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNLLR-----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYII 98 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHH
Confidence 36677777777777766664333 235555554332 3333333444 5677788899999997 999888877
Q ss_pred HHHHHHHHHHHhhhhcc--cccCCCCCcccccccccCCCCCcc---------hhhHHHHHHHHHHHHHhhcCh-hhhhhh
Q 010358 143 TTIYLAGLTGITLCATM--KVFMPNQDNCDRISQLLGSCEPAK---------SWQMLYLYTVLYITGFGAAGI-RPCVSS 210 (512)
Q Consensus 143 ~~l~~ig~~~l~~~~~~--~~l~~~~~~~~~~~~~~~~c~~~~---------~~~~~~l~~~~~l~g~g~g~~-~~~~~~ 210 (512)
...+....+++++.... ..++|. +.-.++ -.+-.|+. .+....+++.-= +-.... .-....
T Consensus 99 ~~~F~~fF~LFa~Vi~P~~~~~hp~--~~~~~~--~~~~~p~~l~~~ili~~~Ws~s~~Yi~aE---LWgslV~S~lFw~ 171 (509)
T COG3202 99 LGFFLGFFALFAFVIYPYKDILHPD--PEFSRD--LFADLPMFLKWFILIVGEWSYSLFYIMAE---LWGSLVLSLLFWQ 171 (509)
T ss_pred HHHHHHHHHHHHHHHhccccccCCC--HHHHHH--HHhhCCccceeeeEeecchHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 77666666666654321 011221 000000 00000100 012222222211 111111 223456
Q ss_pred HhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhh
Q 010358 211 FGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (512)
Q Consensus 211 ~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~ 254 (512)
+..|+...++ -.++++.++...|++..++..+..++..
T Consensus 172 faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 172 FANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7778888777 7899999999999999999999988865
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=83.62 E-value=8.7 Score=40.56 Aligned_cols=55 Identities=13% Similarity=0.002 Sum_probs=41.0
Q ss_pred HHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccc
Q 010358 197 TGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (512)
Q Consensus 197 ~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~g 257 (512)
..+..+...-....+.+++-|+.. -++.+++.....|+|..++..++..+.+.++
T Consensus 328 ~~~~~~i~~mP~lvl~a~lcP~G~------Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 328 EEVIGMIAFMPSLVLAARLCPKGS------EGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333333444455667889999877 7899999999999999999998888866544
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=82.67 E-value=15 Score=39.22 Aligned_cols=58 Identities=12% Similarity=0.128 Sum_probs=44.5
Q ss_pred HHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccch
Q 010358 195 YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (512)
Q Consensus 195 ~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw 258 (512)
.+..+..-.....+.++-+...++.- -|+.|.+.+...|+|+-.-.+++-++.|.+.+
T Consensus 413 ~l~sf~stvmFVai~AFharISDP~I------GGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~ 470 (544)
T PF13000_consen 413 VLSSFMSTVMFVAIMAFHARISDPAI------GGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTV 470 (544)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCccc------chHHHHHHHHHHhcCCCchHHHHHHHhhhccc
Confidence 34445556677788899999999888 79999999999999988776666666665443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 512 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 1e-11 | ||
| 4aps_A | 491 | Crystal Structure Of A Pot Family Peptide Transport | 1e-04 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
| >pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 268 bits (687), Expect = 5e-84
Identities = 93/512 (18%), Positives = 173/512 (33%), Gaps = 115/512 (22%)
Query: 64 KTGGWIAAL-FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF------ADSSNAVNNFLG 116
W + +I +E ER +++G+ + F+ + S A + + ++F+
Sbjct: 6 DAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVI 65
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
+LGG++AD + G+Y TI + IY G + +
Sbjct: 66 GVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH------------------ 107
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
+ YT L++ G+ GI+P VSSF DQFD+ K+ + F+ FY
Sbjct: 108 ---------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ---SNKSLAQKAFDMFYF 155
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
++ G+ A + + G AFG + M ++ + F++G Y H P
Sbjct: 156 TINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGF 215
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA------LE 350
V+ +A + + L + + G SA I L A +
Sbjct: 216 LPVIRSALLTKVEGKGNIGL--VLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVG 273
Query: 351 LKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 410
+ K V+ V++++R++ + A + + + + QA M
Sbjct: 274 AGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ 333
Query: 411 GHP-------------------------------RGASQLQRVGIGLAVSILSVIWAGL- 438
+ L+++G G+A++ LS I G
Sbjct: 334 WFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTI 393
Query: 439 ---------------------------------LEFLYEEAPDAMKSIGSAYAALAGGLG 465
LEF Y +AP AMK ++ L+ +G
Sbjct: 394 QLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVG 453
Query: 466 CFAASILNSIIKSVTGNPKKGQPNWLAQNINT 497
+ N +KS T + ++
Sbjct: 454 NLWVLLANVSVKSPTVT-----EQIVQTGMSV 480
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 1e-14
Identities = 41/217 (18%), Positives = 85/217 (39%), Gaps = 37/217 (17%)
Query: 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHK-----SFADSSNAVNNFLGISQASSVLGGFL 128
+F EM ER +Y+G+ ++ +M++++ + A +++ + + + S +GGF+
Sbjct: 18 LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77
Query: 129 ADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 188
AD +G + + + G + A +
Sbjct: 78 ADRIIGARPAVFWGGVLIMLGHIVL----------------------------ALPFGAS 109
Query: 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
L+ + + G ++P VS+ +DE + D F+ F + +GA +A +
Sbjct: 110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLI 165
Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
V Q G+ AF AI M I ++++ G
Sbjct: 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 3e-06
Identities = 64/466 (13%), Positives = 128/466 (27%), Gaps = 161/466 (34%)
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
K + D+ K+ I E + + +V+ +F+ + V F+
Sbjct: 36 KDVQDMPKS--------ILSKEEIDHIIMSKDAVSGTLRLFWTLLSK---QEEMVQKFVE 84
Query: 117 ISQASSVLG---GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR-- 171
VL FL ++ T +Y+ L +VF N R
Sbjct: 85 -----EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAK--YNVSRLQ 135
Query: 172 ----ISQLLGSCEPAKSWQMLYLYTVLY-ITGFG----AAGIRPCVSSFGADQFDERSKD 222
+ Q L PAK ++ + G G A +
Sbjct: 136 PYLKLRQALLELRPAK-------NVLIDGVLGSGKTWVAL---------------DVCLS 173
Query: 223 YKTHLDRFFNFFYLSV----TVGAIVAFTLVVYIQMEHGWGS-AFGALAIAMGISN---- 273
YK F F+L++ + ++ + Q++ W S + + I + I +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 274 MLFFIGTPLYRHRL---------------PGGSPL---TR---VAQVLVAAFRKR----- 307
+ + + Y + L + TR V L AA
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 308 -HAAFSSSELIGLY---------EVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVIN 357
+ E+ L ++P + + R L A +++ +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLP--REVLTTNP--------RRLSIIAESIRDGLAT 343
Query: 358 PSPWKLCTVTQVEEV--KTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRG 415
WK ++ + +L L P E+ ++ +
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEP------------AEY-----RKMFDR--------- 377
Query: 416 ASQLQRVGIGLAV---------SILSVIWAGLLEFLYEEAPDAMKS 452
L+V +LS+IW + + + +
Sbjct: 378 ----------LSVFPPSAHIPTILLSLIWF---DVIKSDVMVVVNK 410
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 512 | |||
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.94 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.93 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.86 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.84 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.78 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.76 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.59 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.53 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.39 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.38 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.22 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.09 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.86 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.24 |
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=248.13 Aligned_cols=388 Identities=22% Similarity=0.326 Sum_probs=246.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcC------CChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Q 010358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (512)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~------~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~ 141 (512)
++.++.+.+..++..+++|++..+++.|+++++| ++..+++++.+.+.++..++.+++|+++||++|||+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~ 90 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW 90 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 4456678888999999999999999999999999 9999999999999999999999999999996599999999
Q ss_pred HHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchh-hHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCC
Q 010358 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (512)
Q Consensus 142 ~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~-~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~ 220 (512)
+.++..++.++++++ . +...++++|++.|++.+...++..++++|.+|+++
T Consensus 91 ~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 142 (524)
T 2xut_A 91 LSLIYCVGHAFLAIF----------------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN 142 (524)
T ss_dssp HHHHHHHHHHHHHHT----------------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT
T ss_pred HHHHHHHHHHHHHHh----------------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc
Confidence 999999998888776 3 56788899999999999999999999999999877
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCchHHHHHHH
Q 010358 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300 (512)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~v~ 300 (512)
.+ .+...+++++.+.++|..++|.+++++.+..||++.|++.+++.+++++++++..+..+.+++++++..+..+.+
T Consensus 143 r~---~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (524)
T 2xut_A 143 KS---LAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVI 219 (524)
T ss_dssp TT---HHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------------
T ss_pred hH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHH
Confidence 11 124556679999999999999999999999999999999888877766666554444443333333333333333
Q ss_pred HHHHhhhccccCCcccccccccCCCcccccCCcccccCCccchhhHHHh---hhccccCCCCCc-------ccccchhHH
Q 010358 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAAL---ELKEDVINPSPW-------KLCTVTQVE 370 (512)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~---~~~~~~~~~~~w-------~~~~~~~ve 370 (512)
..+.++++.+.+ +... ............. ..+.+....+..+.. ...+ ...+.+| +.++..+++
T Consensus 220 ~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 293 (524)
T 2xut_A 220 RSALLTKVEGKG-NIGL-VLALIGGVSAAYA---LVNIPTLGIVAGLCCAMVLVMG-FVGAGASLQLERARKSHPDAAVD 293 (524)
T ss_dssp -------CTTHH-HHHH-HHHHHHHHHHHHT---GGGTTTTCSSHHHHHHHHHHHH-HHHTGGGTHHHHSCCSCCSSSST
T ss_pred HHHHhhhhcccC-ccch-hhhhhhhhhhhhh---hcccchhhhhhhhhhhhhhhhc-ccccchhhHHhhhhccccHhHHH
Confidence 333333221100 0000 0000000000000 000000000000000 0000 0001122 112222334
Q ss_pred HHHHHHhhcchhhhhHHHHHHhhccchHHHHHHhhhccc----c-------------------c------CC--CCCChh
Q 010358 371 EVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH----M-------------------G------HP--RGASQL 419 (512)
Q Consensus 371 ~~k~~~~~l~v~~~~~~~~~~~~q~~t~~~~q~~~~~~~----~-------------------~------~~--~~~~~~ 419 (512)
+.|+++..+++++....++..+.+..+.+..+..+++.. . + ++ ++.+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (524)
T 2xut_A 294 GVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTAL 373 (524)
T ss_dssp TTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChH
Confidence 566677777777777778888888877777776555431 1 1 11 123344
Q ss_pred HHHHHHHHHHHHHHHHH----------------------------------HHHHHHHhhcCccchhHHHHHHHHHhHHH
Q 010358 420 QRVGIGLAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIGSAYAALAGGLG 465 (512)
Q Consensus 420 ~~i~iG~~~~~ls~~~a----------------------------------~~~e~~~~~~P~~~~~~~~g~~~~~~~ig 465 (512)
+++.+|+++.+++++.. ....+..+.+|+++||+++|+++...++|
T Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 453 (524)
T 2xut_A 374 RKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVG 453 (524)
T ss_dssp HHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHH
Confidence 55666666555543310 12234568899999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCCCCCCC-Ccccc
Q 010358 466 CFAASILNSIIKSVTGNPKKGQPNWLAQ-NINTD 498 (512)
Q Consensus 466 ~~l~~~l~~~v~~~t~~~~~~~~~w~~~-~~n~~ 498 (512)
+.+++.+.+.+.+.++ .+|+++ ++|.+
T Consensus 454 ~~~g~~~~g~~~~~~~------~~~~~~~~~~~~ 481 (524)
T 2xut_A 454 NLWVLLANVSVKSPTV------TEQIVQTGMSVT 481 (524)
T ss_dssp HHHHHHHHHHTTSCHH------HHHHHHHHSCHH
T ss_pred HHHHHHHHHHhccccc------cccccccccccc
Confidence 9999999998876443 247654 34443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-23 Score=222.17 Aligned_cols=184 Identities=23% Similarity=0.400 Sum_probs=163.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-----cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHH
Q 010358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADA-YLGRYWT 138 (512)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~-----l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~-~~GR~~~ 138 (512)
+++++.++.+.+..++..+++|++..+++.|+++. +|++..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 44566888899999999999999999999999998 99999999999999999999999999999999 6 99999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCC
Q 010358 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (512)
Q Consensus 139 i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~ 218 (512)
+.++.++..++.++++++ .+...++++|++.|+|.+...++..++++|++|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 139 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALP----------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHSC----------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence 999999999998888775 4567788999999999999999999999999998
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 010358 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (512)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~ 281 (512)
++.+ |+.++++++.+.++|..++|.+++++.+..||++.|++.++..+++++++++..+
T Consensus 140 ~~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 140 HDRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp CTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 7633 7788999999999999999999999999999999999988777766666554433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-19 Score=185.26 Aligned_cols=181 Identities=12% Similarity=0.006 Sum_probs=150.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (512)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~ 144 (512)
+++++.++.+.+..++..+..+.+.. +..++.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDI-LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 34566667777777777777654444 45567889999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhh
Q 010358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (512)
Q Consensus 145 l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~ 224 (512)
+..++.+++...... .+...++++|++.|++.+...+...++++|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 150 (438)
T 3o7q_A 100 LYALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---- 150 (438)
T ss_dssp HHHHHHHHHHHHHHT-------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT----
T ss_pred HHHHHHHHHHhcccc-------------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh----
Confidence 999998888332110 467889999999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHhhh-hccc-------------------------hHHHHHHHHHHHHHHHHHHHh
Q 010358 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~l~p~i~~~l~-~~~g-------------------------w~~~f~i~~~~~~i~~i~~~~ 278 (512)
|+..+++++.+.++|..++|.+++++. +..+ |++.|++.++..++..++++.
T Consensus 151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 5554 999998777665555444433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=189.06 Aligned_cols=177 Identities=13% Similarity=0.054 Sum_probs=151.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 010358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (512)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~ 146 (512)
+|+.++.+.+..++..+..+.+...++. +.+++ .+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPY-LVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHH-TTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence 4666777777777777777666665554 45567 9999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHhh----hhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChh
Q 010358 147 LAGLTGITL----CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (512)
Q Consensus 147 ~ig~~~l~~----~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~ 222 (512)
.++.+++++ + .+...++++|++.|++.+...+...++++|.+|+++
T Consensus 103 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~-- 152 (451)
T 1pw4_A 103 AAVMLFMGFVPWAT----------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE-- 152 (451)
T ss_dssp HHHHHHHHHCHHHH----------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH--
T ss_pred HHHHHHHHhhhhcc----------------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh--
Confidence 999988887 4 456778899999999999999999999999999877
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccc-hHHHHHHHHHHHHHHHHHHHhhc
Q 010358 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT 280 (512)
Q Consensus 223 ~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~i~~~~~~ 280 (512)
|++.+++++.+.++|.+++|.+++++.+..| |++.|++.+++.++..++.++..
T Consensus 153 ----r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 153 ----RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp ----HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999888898 99999998877766555544433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.1e-18 Score=178.51 Aligned_cols=149 Identities=13% Similarity=0.161 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCC-CCcc
Q 010358 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC-EPAK 183 (512)
Q Consensus 105 ~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c-~~~~ 183 (512)
...+++.+.+.++..++++++|+++||+ |||+++.++.+++.++.++.+++......... ... ...-
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~-----------~~~~~~~~ 122 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP-----------DNTVPVYL 122 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS-----------SSSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-----------hhHHHHHH
Confidence 3456788889999999999999999998 99999999999999999988864211000000 000 0000
Q ss_pred hhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhc--------
Q 010358 184 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-------- 255 (512)
Q Consensus 184 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~-------- 255 (512)
..+...++++|++.|+|.|+..+..+++++|..|++. |+...++++.+..+|..+++.++..+...
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT 196 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence 1578899999999999999999999999999999887 99999999999999999888887666432
Q ss_pred cchHHHHHHHHHHHHH
Q 010358 256 HGWGSAFGALAIAMGI 271 (512)
Q Consensus 256 ~gw~~~f~i~~~~~~i 271 (512)
.+|++.+.+..+..++
T Consensus 197 ~~~~~~~~~~~~~~~~ 212 (491)
T 4gc0_A 197 DGWRYMFASECIPALL 212 (491)
T ss_dssp THHHHHHHTTHHHHHH
T ss_pred hhhHHHhhhhhhhhhh
Confidence 3466666655544433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-18 Score=176.99 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 010358 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (512)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~ 151 (512)
+.+.+..++..+......+.++. +.+++|.+..+.+.+.+.+..+..++.++.|+++||+ |||+++.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 34455566666666555555554 4678999999999999999999999999999999998 999999999999999988
Q ss_pred HHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHH
Q 010358 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (512)
Q Consensus 152 ~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (512)
++.+. .+...++++|++.|++.+...+...+++.|.+|+++ |++.+
T Consensus 81 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 126 (375)
T 2gfp_A 81 VAVTT----------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHAN 126 (375)
T ss_dssp HHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHH
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHH
Confidence 88876 577889999999999999999999999999999887 99999
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHH
Q 010358 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (512)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i 274 (512)
++++....+|..++|.+++++.+..||++.|++.++..++..+
T Consensus 127 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 127 SLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999989999999887766554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.2e-16 Score=161.07 Aligned_cols=169 Identities=11% Similarity=-0.121 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
..+.+....++..+++..+.++++.|+++++|++..+++.+.+.+.++..++++++|+++||+ |||+++.++..++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence 455555556666666667778899999999999999999999999999999999999999998 9999999888776543
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhH-HHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~-~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (512)
...+...... ... ..++.++.+.+++.+...+...+...+..++.. +.++
T Consensus 87 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~ 137 (417)
T 2cfq_A 87 FAPFFIFIFG-------------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN 137 (417)
T ss_dssp HHHHHHHTHH-------------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHT
T ss_pred HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcc
Confidence 2222111000 000 012233333333333333333333333322111 1255
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHH
Q 010358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (512)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~ 269 (512)
..++..+...++|..++|.+++++.+ .+|++.|++.++..
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 56666667788999999999999876 58999988765553
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-13 Score=142.14 Aligned_cols=178 Identities=15% Similarity=0.136 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHH
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIAIFTTIYL 147 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~-GR~~~i~~~~~l~~ 147 (512)
+.++.+.+..++..+.++++..+++.|+++.+|++..+++.+.+...++..++.++.|+++||+. |||+.+.++..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 46777777888888888899999999999989999999999999999999999999999999942 88888877776655
Q ss_pred -HHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 148 -AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 148 -ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
++.+++.+. +. .+...+.+..++.|++.++..+...+++.|.+|++.
T Consensus 332 ~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 379 (451)
T 1pw4_A 332 TIATIVYWMN-------PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------ 379 (451)
T ss_dssp HHHHHHTTSC-------CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------
T ss_pred HHHHHHHHHh-------cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------
Confidence 555554432 10 245566777788889888888888999999999887
Q ss_pred hhhHHHHHHHHHHH-HHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 227 LDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 227 r~~~~~~~~~~~~l-g~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
|++++++++...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+.
T Consensus 380 ~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 380 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999888877766665544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-11 Score=127.44 Aligned_cols=167 Identities=10% Similarity=0.009 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~y-l~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~i 148 (512)
.++...+..++.....+++..+++.| +++.+|++..+++...+.+.++..++.+++|+++||+ |||+++.++.++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMA 337 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 45556666677777778888999999 8888899999999999999999999999999999997 999999999988887
Q ss_pred HHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhh
Q 010358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (512)
Q Consensus 149 g~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (512)
+.+++... .+.. ..+..++.+++.+...+...++..|.+|++ ++
T Consensus 338 ~~~~~~~~----------------------------~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~ 381 (438)
T 3o7q_A 338 LCLISAFA----------------------------GGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TK 381 (438)
T ss_dssp HHHHHHHC----------------------------CHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HH
T ss_pred HHHHHHHc----------------------------CCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cc
Confidence 77666654 2222 234457888899999999999989998843 44
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhccc-hHHHHHHHHHHHHHHHH
Q 010358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNM 274 (512)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~i 274 (512)
.+.++.. ...+|+.++|.+.|++.+..| ++..|++.+++.++.++
T Consensus 382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred chhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4444444 556999999999999999999 99999876655544433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.9e-12 Score=130.40 Aligned_cols=173 Identities=10% Similarity=0.053 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 010358 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (512)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s---~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~i 148 (512)
+...+..+.....++....+++.|+.+.++.. ....+...+...++..++.+++|+++||+ |||+++.++.++..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~ 301 (417)
T 2cfq_A 223 WFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSV 301 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHH
Confidence 33333333334444455566888887766532 23345555566667778899999999998 999999888887777
Q ss_pred HHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhh
Q 010358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (512)
Q Consensus 149 g~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (512)
+.+++++. .+...+++..++.+++.+...+....+.+|.+|++. |+
T Consensus 302 ~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g 347 (417)
T 2cfq_A 302 RIIGSSFA----------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SA 347 (417)
T ss_dssp HHHHHTTC----------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HH
T ss_pred HHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HH
Confidence 65555443 233445555666677766666777889999999876 89
Q ss_pred hHHHH-HHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhh
Q 010358 229 RFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (512)
Q Consensus 229 ~~~~~-~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~ 279 (512)
+++++ ++....+|+.++|.++|++.+..|+...|.+.+++.+++.++.+..
T Consensus 348 ~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 348 TIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 98888 5788889999999999999998899989988877776666655443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.6e-11 Score=125.74 Aligned_cols=186 Identities=12% Similarity=0.015 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH-----HHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTT 144 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~-----~~~~ 144 (512)
..+.+.+..++..+.++....+++.|+.+.++.+..+++.......+...++.++.|+++||+ |||+... ++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence 344445455555666666777889999998888877777777778888888899999999998 9876544 5666
Q ss_pred HHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhh
Q 010358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (512)
Q Consensus 145 l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~ 224 (512)
+..++.+++......... +...+...+.++.++.+++.+...+...++..|.+|++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---- 419 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYGT-------------------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF---- 419 (491)
T ss_dssp HHHHHHTTTHHHHHHCCC-------------------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC----
T ss_pred HHHHHHHHHHHHHHhcCC-------------------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH----
Confidence 666665555443110000 001245566777888999999989999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhccc
Q 010358 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (512)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~ 282 (512)
|+.+.++++...++|..++|.+.+++.+. ++.+.|++.+++.+++.++.++..++
T Consensus 420 --~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 420 --NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp --SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988764 66677777777666666655554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-08 Score=107.52 Aligned_cols=185 Identities=9% Similarity=0.002 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
....+....+....+.+.+ .+...++.+..+.+............+...++.++++++.||+ |||+.++.+.....++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVV-LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHH-HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHH-HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence 3333333333334444444 4445666677888887777777777788889999999999998 9999999998888887
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
.+.+....... .. .....+.+..+..+++ .+..+....+.+|.||++. |++
T Consensus 356 ~~~l~~~~~~~---~~-------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~ 406 (491)
T 4gc0_A 356 MFSLGTAFYTQ---AP-------------------GIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGK 406 (491)
T ss_dssp HHHHHHHHHTT---CC-------------------HHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHH
T ss_pred HHHHHHHHhcc---cc-------------------hHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHH
Confidence 77665542210 00 1112222222222222 3345667789999999998 999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhh------ccchHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010358 230 FFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~l~~------~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~ 285 (512)
++++.+....+|+.+++.+.+++.+ ..++.+.|++.+++.+++.++.++..|+.+.
T Consensus 407 ~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 407 ALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 9999999899999988887766643 3455667777777777777666666665543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.86 E-value=1e-09 Score=111.15 Aligned_cols=165 Identities=12% Similarity=-0.089 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH-HH
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YL 147 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l-~~ 147 (512)
+.++...+..++.....+++..+++.|+++.+|.+..+++.+.....++..++.++.|+++||+ ||+ +.++..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 3566666777777888888888999999998999999999999999999999999999999997 872 2333322 22
Q ss_pred HHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhh
Q 010358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (512)
Q Consensus 148 ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (512)
++..++..... + ..+...+++..++.+++.+...+...++..|.+| ++ |
T Consensus 276 ~~~~~~~~~~~-----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~ 324 (375)
T 2gfp_A 276 AGLLMWIPDWF-----G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------A 324 (375)
T ss_dssp TSSSSSHHHHH-----H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------H
T ss_pred HHHHHHHHhhh-----c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------c
Confidence 22221111100 0 0245566677788899999999999999999987 45 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHH
Q 010358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 267 (512)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~ 267 (512)
++.+++++...++|..++|.+.+++.+..+|...+.+.++
T Consensus 325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999999999999999999999999888888877766443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.2e-06 Score=92.49 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhcc--ch-----
Q 010358 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GW----- 258 (512)
Q Consensus 186 ~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~--gw----- 258 (512)
+...++++.++.+++.+...+...++..|.+|++. |++++++++...++|+.++|.+.+++.+.. +|
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~ 477 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG 477 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 44566777888999999999999999999999888 999999999999999999999999988743 23
Q ss_pred ----HHHHHHHHHHHHHHHHHHHhhcc
Q 010358 259 ----GSAFGALAIAMGISNMLFFIGTP 281 (512)
Q Consensus 259 ----~~~f~i~~~~~~i~~i~~~~~~~ 281 (512)
+..|++.+++.+++.+++++..+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 23366666655555555544433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 512 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.85 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.72 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.51 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.35 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=5.2e-20 Score=188.29 Aligned_cols=181 Identities=12% Similarity=0.046 Sum_probs=143.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 010358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (512)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~ 146 (512)
+|..+..+++..+...+.... ...+.+++. ++|++.++.+++.+.+.++..++.+++|+++||+ |||+++.++.++.
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~~-~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~ 99 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRKN-FALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA 99 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS-HHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHH
Confidence 455554444444444443322 344566776 5899999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 147 ~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
.++.+++++..... .+...+++.|++.|++.|...+...++++|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------ 149 (447)
T d1pw4a_ 100 AAVMLFMGFVPWAT------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------ 149 (447)
T ss_dssp HHHHHHHHHCHHHH------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------
T ss_pred HHHHhhccccchhh------------------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------
Confidence 99888877652110 255678899999999999999999999999999887
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHhhc
Q 010358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLFFIGT 280 (512)
Q Consensus 227 r~~~~~~~~~~~~lg~~l~p~i~~~l~~~-~gw~~~f~i~~~~~~i~~i~~~~~~ 280 (512)
|++.+++++.+.++|..++|.+++.+... .+|++.|++.+++.++..++.+...
T Consensus 150 r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 204 (447)
T d1pw4a_ 150 RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM 204 (447)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhc
Confidence 99999999999999999999988876664 4799999888777665555544433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=4e-16 Score=155.49 Aligned_cols=180 Identities=12% Similarity=-0.091 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~i 148 (512)
|..|.+.+..++..++...+.+.++.|+++++|++..+.+++.+++.++..++.+++|+++||+ |||++++++..+..+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 4677777777888888877788899999999999999999999999999999999999999998 999999999888888
Q ss_pred HHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhh
Q 010358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (512)
Q Consensus 149 g~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (512)
+..++.+....+ ......++.+.+.+.+.+...........+..+++. ..+.
T Consensus 86 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 137 (417)
T d1pv7a_ 86 MFAPFFIFIFGP------------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN 137 (417)
T ss_dssp THHHHHHHTHHH------------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH----HHHS
T ss_pred HHHHHHHhhhhh------------------------hHHHHHHHHHHHhhhcccccccchhhcccccccchh----hhhH
Confidence 777776651100 111112233333333333333333332222222211 1244
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
...+........+..++|.+++++.+.. |+..+.+......+..++.++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~ 186 (417)
T d1pv7a_ 138 FEFGRARMFGCVGWALGASIVGIMFTIN-NQFVFWLGSGCALILAVLLFF 186 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhhcccccccccccccccccc-ccccccchhhHHHHHHHHHHH
Confidence 5556667777888889999998887654 444555444444433333333
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=1.2e-13 Score=140.28 Aligned_cols=182 Identities=15% Similarity=0.061 Sum_probs=139.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 010358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (512)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~ 146 (512)
+.+.++.+....++.....+++..+++.|+.+.++++..+++.......+...++.+++|+++||+ +|++.........
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~ 325 (447)
T d1pw4a_ 247 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFM 325 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHH
T ss_pred cCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhH
Confidence 345677777788888888889999999999999999999999999999999999999999999998 8765444333332
Q ss_pred HHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 147 ~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
.+..+.+..... .+. .+....++..++.|++.++..+....+..|.+|++.
T Consensus 326 ~~~~~~~~~~~~----~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------ 376 (447)
T d1pw4a_ 326 TLVTIATIVYWM----NPA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------ 376 (447)
T ss_dssp HHHHHHHHHTTS----CCT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------
T ss_pred HHHHHHHHHHHh----ccc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------
Confidence 222222222110 011 355666777778888888888899999999999877
Q ss_pred hhhHHHHHHHHHHH-HHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 227 LDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 227 r~~~~~~~~~~~~l-g~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
|+++.++.+...++ |.+++|.+.+++.+.+||+..|++.+++.+++.++...
T Consensus 377 ~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 377 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888777 55678999999999999999998877766655554433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=1.7e-12 Score=128.59 Aligned_cols=146 Identities=10% Similarity=0.019 Sum_probs=121.3
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCC
Q 010358 100 MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 179 (512)
Q Consensus 100 l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c 179 (512)
.+.+....+.......++..++.++.+++.||+ ||++++.++.++..++.+++...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~----------------------- 309 (417)
T d1pv7a_ 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA----------------------- 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTC-----------------------
T ss_pred cccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccc-----------------------
Confidence 334455566677777888889999999999998 99999999999888887777665
Q ss_pred CCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHH-HHHHHHHHHHHhHHHHhhhhccch
Q 010358 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF-YLSVTVGAIVAFTLVVYIQMEHGW 258 (512)
Q Consensus 180 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~-~~~~~lg~~l~p~i~~~l~~~~gw 258 (512)
.+...+++..++.+++.+...+...+++.|.+|++. |++.+++. .+...+|..++|.+.|++.|.+||
T Consensus 310 -----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~ 378 (417)
T d1pv7a_ 310 -----TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF 378 (417)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCH
T ss_pred -----cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Confidence 356677778888999999999999999999999888 99999984 567789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 010358 259 GSAFGALAIAMGISNMLFFIGT 280 (512)
Q Consensus 259 ~~~f~i~~~~~~i~~i~~~~~~ 280 (512)
+..|++.+++.++..++.++..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 379 QGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999988877766666555544
|